Query 000101
Match_columns 2239
No_of_seqs 687 out of 3283
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 18:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386 Chromatin remodeling c 100.0 5E-162 1E-166 1503.7 59.9 960 703-1806 128-1127(1157)
2 KOG0385 Chromatin remodeling c 100.0 5E-107 1E-111 991.1 47.5 510 988-1559 155-670 (971)
3 KOG0384 Chromodomain-helicase 100.0 4.8E-98 1E-102 945.4 36.2 508 986-1558 356-887 (1373)
4 KOG0388 SNF2 family DNA-depend 100.0 6.8E-93 1.5E-97 853.2 44.4 463 988-1516 556-1182(1185)
5 KOG0391 SNF2 family DNA-depend 100.0 2.7E-92 5.9E-97 873.2 36.9 485 990-1533 606-1429(1958)
6 KOG0389 SNF2 family DNA-depend 100.0 4.9E-88 1.1E-92 828.1 42.7 487 989-1533 387-929 (941)
7 PLN03142 Probable chromatin-re 100.0 2.2E-86 4.9E-91 869.4 55.5 509 989-1562 159-672 (1033)
8 KOG0387 Transcription-coupled 100.0 2E-83 4.3E-88 789.0 42.6 467 991-1510 197-680 (923)
9 KOG0392 SNF2 family DNA-depend 100.0 3.1E-81 6.6E-86 787.5 42.2 494 992-1530 968-1496(1549)
10 KOG0390 DNA repair protein, SN 100.0 1.2E-64 2.6E-69 640.7 42.7 461 999-1514 237-733 (776)
11 KOG1015 Transcription regulato 100.0 3.8E-63 8.2E-68 608.2 37.7 553 986-1589 655-1381(1567)
12 COG0553 HepA Superfamily II DN 100.0 1.9E-62 4.2E-67 646.1 40.1 470 996-1511 334-845 (866)
13 KOG1002 Nucleotide excision re 100.0 2E-61 4.3E-66 568.1 33.5 463 989-1511 174-772 (791)
14 KOG4439 RNA polymerase II tran 100.0 2.6E-59 5.7E-64 569.0 33.4 468 989-1512 315-882 (901)
15 KOG1016 Predicted DNA helicase 100.0 1E-51 2.2E-56 500.1 27.0 481 1000-1535 254-892 (1387)
16 PRK04914 ATP-dependent helicas 100.0 2.9E-50 6.4E-55 528.3 37.9 436 999-1512 151-629 (956)
17 KOG1000 Chromatin remodeling p 100.0 1.7E-48 3.6E-53 461.5 33.0 418 1000-1509 198-624 (689)
18 KOG0383 Predicted helicase [Ge 100.0 3.5E-50 7.5E-55 506.4 7.8 387 990-1409 283-696 (696)
19 KOG0386 Chromatin remodeling c 100.0 5.1E-50 1.1E-54 502.5 -14.1 922 8-969 14-984 (1157)
20 KOG1001 Helicase-like transcri 100.0 1.4E-44 3.1E-49 461.2 23.0 443 1003-1508 135-670 (674)
21 PF00176 SNF2_N: SNF2 family N 100.0 1.1E-39 2.5E-44 379.4 22.9 280 1004-1309 1-298 (299)
22 TIGR00603 rad25 DNA repair hel 100.0 1.4E-35 3E-40 380.1 33.2 333 998-1453 253-605 (732)
23 PRK13766 Hef nuclease; Provisi 100.0 1E-32 2.2E-37 363.9 36.1 427 999-1452 14-476 (773)
24 KOG0345 ATP-dependent RNA heli 100.0 1.1E-28 2.3E-33 294.2 31.7 432 999-1588 27-492 (567)
25 PHA02558 uvsW UvsW helicase; P 100.0 3.5E-28 7.6E-33 307.1 33.5 336 998-1453 112-453 (501)
26 COG1111 MPH1 ERCC4-like helica 100.0 4.3E-28 9.4E-33 293.2 30.6 420 999-1453 14-479 (542)
27 COG1061 SSL2 DNA or RNA helica 100.0 1.5E-27 3.3E-32 297.1 33.6 347 998-1451 34-388 (442)
28 KOG0331 ATP-dependent RNA heli 100.0 3.6E-27 7.8E-32 291.5 27.0 316 1000-1449 113-444 (519)
29 PRK11776 ATP-dependent RNA hel 100.0 1.6E-26 3.5E-31 288.9 31.5 311 1000-1449 26-345 (460)
30 PTZ00110 helicase; Provisional 100.0 1.7E-26 3.7E-31 294.3 31.8 316 1000-1449 152-480 (545)
31 KOG0298 DEAD box-containing he 100.0 4.3E-28 9.3E-33 312.1 16.5 274 1016-1309 371-690 (1394)
32 KOG0330 ATP-dependent RNA heli 99.9 1.4E-26 3E-31 271.8 24.3 314 1000-1453 83-405 (476)
33 TIGR00614 recQ_fam ATP-depende 99.9 1.2E-25 2.6E-30 282.2 30.9 307 1000-1451 11-331 (470)
34 PRK04537 ATP-dependent RNA hel 99.9 1.4E-25 3E-30 287.3 31.6 312 1000-1449 31-360 (572)
35 PRK11192 ATP-dependent RNA hel 99.9 2.3E-25 5E-30 276.4 32.6 312 1000-1449 23-348 (434)
36 PRK11634 ATP-dependent RNA hel 99.9 4.7E-25 1E-29 284.5 35.8 313 1000-1450 28-349 (629)
37 PRK10590 ATP-dependent RNA hel 99.9 1.6E-25 3.6E-30 280.0 30.6 312 1000-1450 23-349 (456)
38 PRK04837 ATP-dependent RNA hel 99.9 1.4E-25 3E-30 277.8 29.5 311 1000-1449 30-358 (423)
39 PLN00206 DEAD-box ATP-dependen 99.9 2.2E-25 4.8E-30 282.8 30.3 313 999-1449 142-471 (518)
40 PRK01297 ATP-dependent RNA hel 99.9 7.6E-25 1.6E-29 275.1 32.7 313 1000-1449 109-438 (475)
41 COG0513 SrmB Superfamily II DN 99.9 1.1E-24 2.5E-29 275.9 29.7 314 1000-1448 51-375 (513)
42 KOG0354 DEAD-box like helicase 99.9 9.9E-24 2.1E-28 267.5 37.8 420 999-1450 61-527 (746)
43 PTZ00424 helicase 45; Provisio 99.9 2.3E-24 5E-29 263.7 28.9 312 1000-1448 50-369 (401)
44 PRK11057 ATP-dependent DNA hel 99.9 2.6E-24 5.6E-29 277.6 30.8 304 1000-1450 25-340 (607)
45 TIGR01389 recQ ATP-dependent D 99.9 6.3E-24 1.4E-28 273.4 29.2 303 1000-1449 13-327 (591)
46 PLN03137 ATP-dependent DNA hel 99.9 1.6E-23 3.5E-28 274.9 27.1 307 999-1450 459-784 (1195)
47 TIGR00643 recG ATP-dependent D 99.9 2.5E-22 5.5E-27 260.3 32.9 307 999-1450 234-563 (630)
48 PRK11448 hsdR type I restricti 99.9 2.3E-22 5.1E-27 270.9 31.7 359 999-1457 412-820 (1123)
49 TIGR00580 mfd transcription-re 99.9 5.1E-22 1.1E-26 263.8 32.2 305 999-1450 450-767 (926)
50 PRK10917 ATP-dependent DNA hel 99.9 7E-22 1.5E-26 258.0 32.0 306 999-1450 260-586 (681)
51 TIGR03817 DECH_helic helicase/ 99.9 1.1E-21 2.4E-26 257.7 32.5 317 1000-1447 36-380 (742)
52 PRK10689 transcription-repair 99.9 8.9E-22 1.9E-26 266.2 30.1 307 999-1450 599-916 (1147)
53 KOG0343 RNA Helicase [RNA proc 99.9 6.3E-22 1.4E-26 239.2 25.0 321 1000-1458 91-427 (758)
54 PRK13767 ATP-dependent helicas 99.9 2.8E-21 6E-26 258.0 33.2 326 999-1450 31-395 (876)
55 cd05515 Bromo_polybromo_V Brom 99.9 4.9E-23 1.1E-27 211.1 10.5 104 1938-2042 1-104 (105)
56 KOG0342 ATP-dependent RNA heli 99.9 1.3E-21 2.9E-26 235.9 22.9 313 1000-1446 104-430 (543)
57 cd05525 Bromo_ASH1 Bromodomain 99.9 1.1E-22 2.3E-27 208.9 11.3 103 1937-2040 2-104 (106)
58 cd05524 Bromo_polybromo_I Brom 99.9 1.2E-22 2.6E-27 210.7 11.0 107 1939-2046 4-110 (113)
59 KOG0348 ATP-dependent RNA heli 99.9 7.5E-21 1.6E-25 229.7 27.2 342 1000-1457 159-558 (708)
60 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.9E-22 4.2E-27 207.4 11.2 105 1938-2043 2-106 (107)
61 cd05517 Bromo_polybromo_II Bro 99.9 1.7E-22 3.6E-27 206.5 10.6 100 1939-2039 2-101 (103)
62 KOG0350 DEAD-box ATP-dependent 99.9 1.3E-21 2.8E-26 235.3 19.8 344 1000-1446 159-533 (620)
63 cd05518 Bromo_polybromo_IV Bro 99.9 1.9E-22 4.1E-27 206.1 10.2 101 1939-2040 2-102 (103)
64 KOG0340 ATP-dependent RNA heli 99.9 2.9E-21 6.2E-26 225.5 21.1 313 1000-1446 29-354 (442)
65 KOG0338 ATP-dependent RNA heli 99.9 1.3E-20 2.9E-25 226.4 26.8 308 1000-1443 203-523 (691)
66 KOG0333 U5 snRNP-like RNA heli 99.9 6.7E-21 1.5E-25 229.9 22.1 339 1000-1450 267-621 (673)
67 KOG1123 RNA polymerase II tran 99.9 5.8E-21 1.3E-25 228.3 17.7 332 999-1453 301-651 (776)
68 KOG0335 ATP-dependent RNA heli 99.9 1.1E-20 2.5E-25 231.2 20.8 312 1000-1450 96-441 (482)
69 PRK02362 ski2-like helicase; P 99.9 1E-19 2.3E-24 239.9 31.4 316 1000-1451 23-393 (737)
70 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 1.7E-21 3.6E-26 200.2 10.2 102 1938-2042 2-103 (106)
71 KOG0328 Predicted ATP-dependen 99.9 1.3E-20 2.9E-25 214.2 18.3 304 1003-1445 52-365 (400)
72 cd05519 Bromo_SNF2 Bromodomain 99.8 2.6E-21 5.6E-26 197.7 10.5 102 1938-2040 1-102 (103)
73 TIGR01587 cas3_core CRISPR-ass 99.8 2.8E-19 6.1E-24 216.5 28.0 295 1022-1451 2-334 (358)
74 PRK01172 ski2-like helicase; P 99.8 5.2E-19 1.1E-23 231.4 32.1 304 999-1445 21-368 (674)
75 cd05520 Bromo_polybromo_III Br 99.8 7.5E-21 1.6E-25 194.5 9.8 98 1942-2040 5-102 (103)
76 TIGR02621 cas3_GSU0051 CRISPR- 99.8 3.6E-19 7.8E-24 232.0 27.3 101 1341-1446 270-383 (844)
77 TIGR03714 secA2 accessory Sec 99.8 4E-18 8.6E-23 220.6 35.6 413 1000-1459 68-541 (762)
78 cd05522 Bromo_Rsc1_2_II Bromod 99.8 1.6E-20 3.6E-25 192.3 10.8 102 1938-2040 2-103 (104)
79 PRK00254 ski2-like helicase; P 99.8 1.4E-18 3E-23 228.9 31.6 314 1000-1451 23-384 (720)
80 KOG0326 ATP-dependent RNA heli 99.8 1.7E-20 3.7E-25 216.0 10.3 312 1003-1460 110-434 (459)
81 KOG0341 DEAD-box protein abstr 99.8 4.9E-20 1.1E-24 215.5 13.6 311 1000-1449 192-524 (610)
82 KOG4284 DEAD box protein [Tran 99.8 2.5E-19 5.4E-24 219.0 16.3 318 1001-1451 48-376 (980)
83 PRK12898 secA preprotein trans 99.8 5.6E-17 1.2E-21 208.0 37.4 413 998-1459 101-590 (656)
84 COG0514 RecQ Superfamily II DN 99.8 4.7E-18 1E-22 214.5 26.5 307 1000-1451 17-335 (590)
85 KOG0339 ATP-dependent RNA heli 99.8 2.2E-18 4.7E-23 207.2 22.2 314 1002-1453 247-573 (731)
86 PRK09200 preprotein translocas 99.8 4.3E-17 9.3E-22 212.7 36.0 410 1001-1460 77-546 (790)
87 KOG0336 ATP-dependent RNA heli 99.8 9.9E-19 2.1E-23 205.8 18.7 337 969-1446 215-565 (629)
88 PRK09401 reverse gyrase; Revie 99.8 8.6E-18 1.9E-22 228.4 29.7 295 998-1441 78-432 (1176)
89 COG4096 HsdR Type I site-speci 99.8 6.1E-18 1.3E-22 214.7 25.2 358 996-1454 161-547 (875)
90 PRK09751 putative ATP-dependen 99.8 1.3E-17 2.9E-22 227.4 29.7 96 1342-1440 243-371 (1490)
91 COG1201 Lhr Lhr-like helicases 99.8 3.8E-17 8.2E-22 212.4 30.3 318 999-1451 21-360 (814)
92 TIGR00348 hsdR type I site-spe 99.8 8.7E-17 1.9E-21 210.0 33.2 371 999-1456 237-652 (667)
93 cd05502 Bromo_tif1_like Bromod 99.8 1E-18 2.2E-23 180.5 11.9 106 1934-2047 1-109 (109)
94 TIGR00963 secA preprotein tran 99.8 2.2E-17 4.8E-22 212.7 25.1 413 1001-1449 55-513 (745)
95 KOG0347 RNA helicase [RNA proc 99.8 2.6E-18 5.7E-23 208.4 14.9 333 1002-1450 205-566 (731)
96 cd05505 Bromo_WSTF_like Bromod 99.8 1.4E-18 2.9E-23 176.2 9.1 95 1940-2041 3-97 (97)
97 COG1200 RecG RecG-like helicas 99.8 1.2E-16 2.5E-21 201.6 28.4 306 1000-1450 262-588 (677)
98 cd05496 Bromo_WDR9_II Bromodom 99.8 2.5E-18 5.3E-23 180.1 10.4 109 1936-2053 4-113 (119)
99 cd05526 Bromo_polybromo_VI Bro 99.8 4.3E-18 9.4E-23 175.3 11.8 107 1936-2045 2-108 (110)
100 PHA02653 RNA helicase NPH-II; 99.7 2.6E-16 5.7E-21 204.1 30.3 325 992-1453 152-512 (675)
101 cd05504 Bromo_Acf1_like Bromod 99.7 4.2E-18 9.1E-23 177.6 10.9 105 1932-2044 8-112 (115)
102 smart00297 BROMO bromo domain. 99.7 4.1E-18 8.8E-23 173.7 10.5 103 1939-2044 5-107 (107)
103 TIGR03158 cas3_cyano CRISPR-as 99.7 3.5E-16 7.5E-21 191.1 28.2 85 1342-1438 271-357 (357)
104 KOG0346 RNA helicase [RNA proc 99.7 1E-16 2.3E-21 191.3 22.8 306 1004-1451 45-408 (569)
105 cd05499 Bromo_BDF1_2_II Bromod 99.7 4.4E-18 9.6E-23 173.7 9.5 98 1940-2041 3-102 (102)
106 cd05498 Bromo_Brdt_II_like Bro 99.7 6.5E-18 1.4E-22 172.3 9.5 99 1939-2041 2-102 (102)
107 cd05510 Bromo_SPT7_like Bromod 99.7 1.2E-17 2.5E-22 173.5 10.8 106 1935-2047 5-111 (112)
108 KOG0334 RNA helicase [RNA proc 99.7 1.2E-16 2.7E-21 206.8 21.8 315 999-1449 386-716 (997)
109 KOG0332 ATP-dependent RNA heli 99.7 9.1E-17 2E-21 189.1 17.9 303 1003-1445 115-435 (477)
110 TIGR01054 rgy reverse gyrase. 99.7 5.8E-16 1.3E-20 211.0 28.2 313 999-1426 77-410 (1171)
111 cd05495 Bromo_cbp_like Bromodo 99.7 2.3E-17 4.9E-22 170.4 10.7 104 1935-2044 1-106 (108)
112 cd05503 Bromo_BAZ2A_B_like Bro 99.7 1.7E-17 3.7E-22 168.1 9.3 94 1941-2041 4-97 (97)
113 cd05501 Bromo_SP100C_like Brom 99.7 2.6E-17 5.7E-22 167.9 10.2 96 1940-2045 5-100 (102)
114 cd05497 Bromo_Brdt_I_like Brom 99.7 2.9E-17 6.3E-22 169.3 10.7 102 1936-2044 4-107 (107)
115 KOG1474 Transcription initiati 99.7 1E-16 2.3E-21 207.5 18.1 112 1931-2049 216-329 (640)
116 cd05509 Bromo_gcn5_like Bromod 99.7 4.6E-17 1E-21 165.8 10.3 99 1938-2043 2-100 (101)
117 COG1205 Distinct helicase fami 99.7 1.4E-15 3.1E-20 201.8 27.2 315 1000-1446 70-415 (851)
118 TIGR01970 DEAH_box_HrpB ATP-de 99.7 3.2E-15 6.9E-20 197.9 30.3 106 1343-1454 209-335 (819)
119 PRK05580 primosome assembly pr 99.7 7.4E-16 1.6E-20 201.7 24.1 359 999-1451 143-547 (679)
120 cd05507 Bromo_brd8_like Bromod 99.7 5.4E-17 1.2E-21 166.6 10.5 100 1937-2043 3-102 (104)
121 cd05529 Bromo_WDR9_I_like Brom 99.7 1.1E-16 2.4E-21 169.8 10.9 107 1933-2043 20-127 (128)
122 COG1204 Superfamily II helicas 99.7 1.5E-15 3.2E-20 199.5 23.1 309 1000-1443 31-396 (766)
123 PRK11664 ATP-dependent RNA hel 99.7 7.7E-15 1.7E-19 194.6 29.7 106 1342-1453 211-337 (812)
124 PRK14701 reverse gyrase; Provi 99.7 2E-15 4.3E-20 209.5 24.5 338 998-1445 77-448 (1638)
125 cd05508 Bromo_RACK7 Bromodomai 99.7 1.3E-16 2.8E-21 162.5 9.6 97 1937-2041 3-99 (99)
126 TIGR00595 priA primosomal prot 99.7 4.9E-15 1.1E-19 188.2 26.1 129 1023-1160 1-140 (505)
127 cd05500 Bromo_BDF1_2_I Bromodo 99.7 2E-16 4.3E-21 162.0 10.4 101 1934-2041 1-103 (103)
128 cd05528 Bromo_AAA Bromodomain; 99.7 2.9E-16 6.4E-21 163.1 10.6 102 1938-2046 4-109 (112)
129 KOG0344 ATP-dependent RNA heli 99.7 8.2E-16 1.8E-20 190.0 16.3 315 1000-1450 158-492 (593)
130 PF04851 ResIII: Type III rest 99.7 9.6E-16 2.1E-20 166.2 14.3 153 1000-1160 3-183 (184)
131 cd05511 Bromo_TFIID Bromodomai 99.7 2.9E-16 6.2E-21 163.2 9.7 96 1942-2044 5-100 (112)
132 cd05506 Bromo_plant1 Bromodoma 99.7 2.2E-16 4.8E-21 160.2 8.6 96 1939-2041 2-99 (99)
133 KOG0327 Translation initiation 99.6 1.4E-15 3E-20 181.0 15.1 308 1003-1453 51-368 (397)
134 PRK13104 secA preprotein trans 99.6 1.2E-13 2.6E-18 180.8 34.2 415 1000-1460 82-592 (896)
135 cd05512 Bromo_brd1_like Bromod 99.6 4.4E-16 9.6E-21 158.3 9.2 91 1939-2036 3-93 (98)
136 PRK09694 helicase Cas3; Provis 99.6 1.1E-13 2.3E-18 183.9 32.6 109 1331-1443 549-665 (878)
137 cd05513 Bromo_brd7_like Bromod 99.6 5.2E-16 1.1E-20 157.8 8.5 92 1938-2036 2-93 (98)
138 cd00079 HELICc Helicase superf 99.6 1.6E-15 3.5E-20 156.0 12.0 120 1327-1449 12-131 (131)
139 cd04369 Bromodomain Bromodomai 99.6 8.3E-16 1.8E-20 152.1 9.4 97 1939-2040 2-98 (99)
140 PRK12906 secA preprotein trans 99.6 9.3E-13 2E-17 171.8 35.1 422 998-1459 78-557 (796)
141 COG1197 Mfd Transcription-repa 99.6 1.3E-13 2.8E-18 182.1 27.2 305 1000-1449 594-909 (1139)
142 COG5076 Transcription factor i 99.6 1.8E-15 3.8E-20 185.9 9.1 107 1939-2046 144-250 (371)
143 PRK12904 preprotein translocas 99.6 1.5E-12 3.3E-17 170.5 35.6 409 1000-1459 81-577 (830)
144 COG4889 Predicted helicase [Ge 99.6 8.2E-15 1.8E-19 183.6 11.9 156 999-1159 160-350 (1518)
145 KOG0337 ATP-dependent RNA heli 99.6 2.5E-14 5.4E-19 170.8 15.2 321 979-1445 30-360 (529)
146 smart00487 DEXDc DEAD-like hel 99.6 8.7E-14 1.9E-18 150.2 17.0 166 998-1169 6-180 (201)
147 PF00439 Bromodomain: Bromodom 99.5 1.1E-14 2.3E-19 142.5 8.4 84 1942-2032 1-84 (84)
148 TIGR00631 uvrb excinuclease AB 99.5 7.1E-13 1.5E-17 172.7 25.4 114 1325-1441 424-542 (655)
149 cd05492 Bromo_ZMYND11 Bromodom 99.5 4.8E-14 1E-18 145.9 10.1 96 1945-2041 8-103 (109)
150 PRK11131 ATP-dependent RNA hel 99.5 1.6E-12 3.4E-17 176.2 26.4 105 1342-1454 285-410 (1294)
151 COG4098 comFA Superfamily II D 99.5 6E-12 1.3E-16 148.1 27.6 311 995-1451 92-414 (441)
152 PRK13107 preprotein translocas 99.5 1.5E-11 3.2E-16 161.1 33.5 418 1000-1459 82-595 (908)
153 KOG0351 ATP-dependent DNA heli 99.5 6.9E-13 1.5E-17 176.1 21.3 310 1000-1453 264-592 (941)
154 cd00046 DEXDc DEAD-like helica 99.5 3.3E-13 7.1E-18 137.5 14.1 136 1021-1159 2-144 (144)
155 PRK05298 excinuclease ABC subu 99.5 3.4E-12 7.4E-17 167.0 24.4 112 1326-1440 429-545 (652)
156 PF00271 Helicase_C: Helicase 99.5 1.1E-13 2.4E-18 133.0 7.6 78 1361-1441 1-78 (78)
157 TIGR01967 DEAH_box_HrpA ATP-de 99.4 3.2E-12 6.9E-17 173.8 23.7 105 1342-1454 278-403 (1283)
158 PRK12899 secA preprotein trans 99.4 7.2E-11 1.6E-15 155.0 34.9 155 1298-1459 518-685 (970)
159 PRK12900 secA preprotein trans 99.4 1.3E-10 2.8E-15 152.9 35.8 127 1326-1459 581-715 (1025)
160 KOG0352 ATP-dependent DNA heli 99.4 1.1E-11 2.3E-16 148.3 23.1 321 1003-1451 23-360 (641)
161 COG1202 Superfamily II helicas 99.4 5.8E-12 1.3E-16 154.7 20.8 309 1000-1451 216-549 (830)
162 KOG0952 DNA/RNA helicase MER3/ 99.4 2.1E-11 4.5E-16 157.8 25.5 299 1014-1444 121-480 (1230)
163 PF00270 DEAD: DEAD/DEAH box h 99.4 9.5E-12 2.1E-16 134.3 16.0 156 1003-1165 2-167 (169)
164 smart00490 HELICc helicase sup 99.3 3.2E-12 6.9E-17 121.3 8.1 81 1358-1441 2-82 (82)
165 cd00268 DEADc DEAD-box helicas 99.3 3E-11 6.5E-16 135.3 16.6 155 1000-1160 21-185 (203)
166 COG1203 CRISPR-associated heli 99.3 4E-10 8.6E-15 149.7 29.6 322 1000-1451 195-548 (733)
167 COG0556 UvrB Helicase subunit 99.3 4E-10 8.6E-15 138.8 26.9 102 1337-1441 440-546 (663)
168 KOG0353 ATP-dependent DNA heli 99.3 8.9E-11 1.9E-15 138.1 19.5 313 999-1453 93-467 (695)
169 PRK12326 preprotein translocas 99.3 7.6E-09 1.7E-13 133.8 36.7 413 998-1460 76-552 (764)
170 TIGR01407 dinG_rel DnaQ family 99.2 5.7E-09 1.2E-13 141.0 29.1 111 1332-1448 662-809 (850)
171 KOG1245 Chromatin remodeling c 99.1 4.6E-11 1E-15 164.0 8.1 98 1942-2047 1306-1403(1404)
172 KOG1827 Chromatin remodeling c 99.1 9.4E-11 2E-15 148.5 9.3 120 1935-2055 50-175 (629)
173 COG1110 Reverse gyrase [DNA re 99.1 1E-08 2.3E-13 133.7 27.1 128 998-1133 80-215 (1187)
174 COG0610 Type I site-specific r 99.1 3.5E-09 7.7E-14 143.6 22.9 161 1000-1166 244-420 (962)
175 PRK13103 secA preprotein trans 99.1 4.5E-08 9.8E-13 129.3 32.1 156 1298-1460 399-596 (913)
176 KOG0329 ATP-dependent RNA heli 99.1 1.6E-09 3.6E-14 123.5 15.9 125 1002-1134 66-198 (387)
177 KOG0349 Putative DEAD-box RNA 99.1 7.6E-10 1.6E-14 132.5 13.4 97 1342-1441 504-603 (725)
178 KOG0947 Cytoplasmic exosomal R 99.0 4.5E-08 9.8E-13 126.5 28.2 154 998-1191 295-456 (1248)
179 PRK12903 secA preprotein trans 99.0 1.8E-07 3.8E-12 122.8 33.7 404 1000-1459 78-543 (925)
180 KOG0951 RNA helicase BRR2, DEA 99.0 7.5E-09 1.6E-13 135.9 21.0 157 1019-1180 325-503 (1674)
181 cd05517 Bromo_polybromo_II Bro 99.0 2.3E-11 5E-16 125.1 -2.2 83 1705-1799 3-96 (103)
182 cd05525 Bromo_ASH1 Bromodomain 98.9 8.6E-11 1.9E-15 121.6 -2.0 86 1706-1803 6-103 (106)
183 COG1198 PriA Primosomal protei 98.9 2E-07 4.2E-12 122.5 25.0 151 1000-1159 198-359 (730)
184 COG5076 Transcription factor i 98.8 3.2E-10 6.8E-15 140.0 -1.4 192 1725-2042 159-361 (371)
185 KOG1472 Histone acetyltransfer 98.8 2.1E-09 4.6E-14 138.4 6.0 90 1956-2046 619-708 (720)
186 cd05516 Bromo_SNF2L2 Bromodoma 98.8 1.8E-10 3.8E-15 119.4 -3.0 84 1706-1801 5-99 (107)
187 PF11496 HDA2-3: Class II hist 98.8 5.3E-08 1.2E-12 117.2 16.8 208 1243-1453 4-243 (297)
188 cd05520 Bromo_polybromo_III Br 98.8 3.3E-10 7.2E-15 116.7 -1.6 79 1711-1800 8-97 (103)
189 cd05515 Bromo_polybromo_V Brom 98.8 4.4E-10 9.5E-15 116.1 -2.0 84 1711-1805 8-103 (105)
190 cd05518 Bromo_polybromo_IV Bro 98.8 6E-10 1.3E-14 114.9 -1.9 84 1711-1805 8-102 (103)
191 COG4581 Superfamily II RNA hel 98.8 2E-07 4.4E-12 124.8 20.7 159 997-1191 116-282 (1041)
192 cd05526 Bromo_polybromo_VI Bro 98.7 6.7E-10 1.5E-14 115.4 -2.9 83 1711-1806 11-104 (110)
193 TIGR00604 rad3 DNA repair heli 98.7 2.6E-07 5.5E-12 123.1 20.4 74 998-1071 8-82 (705)
194 CHL00122 secA preprotein trans 98.7 6.8E-06 1.5E-10 108.9 32.3 366 998-1413 74-491 (870)
195 TIGR03117 cas_csf4 CRISPR-asso 98.7 1.2E-06 2.5E-11 114.6 24.5 68 1005-1073 2-70 (636)
196 PRK08074 bifunctional ATP-depe 98.7 6.6E-06 1.4E-10 112.7 31.4 113 1331-1446 739-886 (928)
197 PRK07246 bifunctional ATP-depe 98.7 2.3E-06 5E-11 115.5 25.4 89 1331-1425 635-725 (820)
198 cd05519 Bromo_SNF2 Bromodomain 98.6 2.3E-09 4.9E-14 110.4 -2.5 81 1707-1799 5-96 (103)
199 PRK12901 secA preprotein trans 98.6 1.8E-05 3.8E-10 105.9 32.4 128 1325-1459 610-745 (1112)
200 COG1199 DinG Rad3-related DNA 98.6 6.3E-06 1.4E-10 109.0 28.5 105 1340-1449 476-613 (654)
201 cd05524 Bromo_polybromo_I Brom 98.6 2.1E-09 4.6E-14 112.5 -3.0 78 1711-1799 10-98 (113)
202 PRK12902 secA preprotein trans 98.6 4.9E-05 1.1E-09 101.0 34.6 372 998-1413 83-506 (939)
203 PF13872 AAA_34: P-loop contai 98.6 8.6E-07 1.9E-11 106.1 15.6 158 996-1161 33-222 (303)
204 KOG0949 Predicted helicase, DE 98.6 1.1E-05 2.4E-10 105.4 26.4 161 1001-1172 512-682 (1330)
205 cd05522 Bromo_Rsc1_2_II Bromod 98.5 8.7E-09 1.9E-13 106.5 -1.5 78 1711-1799 9-97 (104)
206 cd05521 Bromo_Rsc1_2_I Bromodo 98.5 8.6E-09 1.9E-13 106.9 -2.3 76 1711-1799 9-95 (106)
207 COG1643 HrpA HrpA-like helicas 98.4 1.4E-05 3.1E-10 106.8 24.1 106 1343-1454 259-386 (845)
208 TIGR00596 rad1 DNA repair prot 98.4 2.9E-06 6.2E-11 113.6 17.6 78 1099-1177 7-92 (814)
209 KOG1513 Nuclear helicase MOP-3 98.4 2E-06 4.2E-11 109.6 14.7 241 992-1261 257-536 (1300)
210 KOG0948 Nuclear exosomal RNA h 98.4 1.8E-06 3.8E-11 110.1 14.1 152 999-1190 128-287 (1041)
211 PRK11747 dinG ATP-dependent DN 98.4 8.1E-05 1.8E-09 99.5 30.4 93 1329-1425 520-616 (697)
212 KOG0920 ATP-dependent RNA heli 98.4 2.2E-05 4.9E-10 104.9 23.1 120 1328-1453 396-542 (924)
213 PF02399 Herpes_ori_bp: Origin 98.4 2.3E-05 5E-10 103.1 22.6 112 1329-1451 269-386 (824)
214 KOG0922 DEAH-box RNA helicase 98.3 0.00012 2.6E-09 94.2 25.6 107 1345-1454 260-389 (674)
215 PRK15483 type III restriction- 98.3 8.6E-06 1.9E-10 109.5 15.9 171 1020-1197 60-280 (986)
216 KOG0950 DNA polymerase theta/e 98.3 4.5E-05 9.8E-10 100.6 21.3 154 1000-1163 223-391 (1008)
217 KOG0953 Mitochondrial RNA heli 98.2 1.3E-05 2.9E-10 100.3 14.9 98 1342-1443 357-464 (700)
218 cd05491 Bromo_TBP7_like Bromod 98.2 1.4E-06 3.1E-11 91.4 4.1 41 1983-2023 63-103 (119)
219 KOG0923 mRNA splicing factor A 98.1 0.0026 5.6E-08 81.7 31.9 101 1345-1450 475-604 (902)
220 PF07652 Flavi_DEAD: Flaviviru 98.1 1.6E-05 3.4E-10 86.9 10.8 126 1021-1159 6-136 (148)
221 COG3587 Restriction endonuclea 98.1 4.4E-05 9.5E-10 99.6 16.4 167 1015-1195 70-269 (985)
222 TIGR02562 cas3_yersinia CRISPR 98.1 0.0012 2.5E-08 89.7 29.2 161 1001-1161 409-636 (1110)
223 KOG0924 mRNA splicing factor A 98.0 0.00026 5.6E-09 90.4 19.5 84 1367-1453 597-695 (1042)
224 PRK14873 primosome assembly pr 98.0 0.00012 2.6E-09 97.0 17.5 123 1029-1159 170-303 (665)
225 cd05508 Bromo_RACK7 Bromodomai 97.9 1.2E-06 2.5E-11 90.3 -1.5 58 1729-1787 17-85 (99)
226 cd05505 Bromo_WSTF_like Bromod 97.9 1.6E-06 3.4E-11 89.0 -0.8 56 1731-1787 17-83 (97)
227 smart00488 DEXDc2 DEAD-like he 97.9 0.00011 2.5E-09 88.7 14.7 73 1000-1072 8-84 (289)
228 smart00489 DEXDc3 DEAD-like he 97.9 0.00011 2.5E-09 88.7 14.7 73 1000-1072 8-84 (289)
229 cd05496 Bromo_WDR9_II Bromodom 97.9 1.4E-06 3E-11 92.4 -2.4 63 1731-1799 22-96 (119)
230 cd05497 Bromo_Brdt_I_like Brom 97.8 1.8E-06 3.8E-11 90.1 -2.1 66 1728-1799 19-97 (107)
231 PF13086 AAA_11: AAA domain; P 97.8 0.00019 4E-09 81.3 13.7 68 1000-1071 1-75 (236)
232 KOG1828 IRF-2-binding protein 97.8 2.9E-05 6.2E-10 94.1 7.4 76 1953-2035 223-298 (418)
233 cd05512 Bromo_brd1_like Bromod 97.8 2.8E-06 6.1E-11 87.3 -1.6 58 1729-1787 16-84 (98)
234 cd05503 Bromo_BAZ2A_B_like Bro 97.7 3.1E-06 6.8E-11 86.6 -2.1 64 1730-1799 16-90 (97)
235 cd05507 Bromo_brd8_like Bromod 97.7 3.8E-06 8.3E-11 87.1 -1.7 58 1729-1787 18-86 (104)
236 cd05499 Bromo_BDF1_2_II Bromod 97.7 4.7E-06 1E-10 85.9 -1.9 66 1728-1799 17-95 (102)
237 cd05513 Bromo_brd7_like Bromod 97.7 5.7E-06 1.2E-10 85.1 -1.5 57 1730-1787 17-84 (98)
238 cd05528 Bromo_AAA Bromodomain; 97.7 6E-06 1.3E-10 86.8 -1.6 63 1731-1799 20-97 (112)
239 cd05504 Bromo_Acf1_like Bromod 97.6 5.4E-06 1.2E-10 87.5 -2.4 63 1731-1799 29-102 (115)
240 cd05509 Bromo_gcn5_like Bromod 97.6 5.4E-06 1.2E-10 85.2 -2.4 63 1731-1799 18-91 (101)
241 KOG0926 DEAH-box RNA helicase 97.6 0.0006 1.3E-08 88.5 14.9 111 1011-1132 263-383 (1172)
242 smart00297 BROMO bromo domain. 97.6 6.6E-06 1.4E-10 84.5 -1.9 69 1711-1787 11-90 (107)
243 cd05510 Bromo_SPT7_like Bromod 97.6 1E-05 2.2E-10 85.2 -0.7 50 1731-1781 25-75 (112)
244 cd05495 Bromo_cbp_like Bromodo 97.6 8.3E-06 1.8E-10 85.2 -1.4 64 1730-1799 20-96 (108)
245 cd05498 Bromo_Brdt_II_like Bro 97.6 7.6E-06 1.6E-10 84.3 -1.8 67 1727-1799 16-95 (102)
246 COG0653 SecA Preprotein transl 97.6 0.012 2.6E-07 78.9 26.4 114 1325-1443 411-535 (822)
247 cd05511 Bromo_TFIID Bromodomai 97.6 1.4E-05 3E-10 84.1 -0.8 57 1730-1787 16-83 (112)
248 cd05502 Bromo_tif1_like Bromod 97.4 1.8E-05 3.8E-10 82.8 -2.3 63 1730-1799 20-96 (109)
249 KOG0955 PHD finger protein BR1 97.4 0.00019 4.2E-09 97.3 6.7 99 1939-2044 567-665 (1051)
250 cd05506 Bromo_plant1 Bromodoma 97.4 2.4E-05 5.1E-10 80.2 -1.8 62 1732-1799 18-92 (99)
251 KOG1827 Chromatin remodeling c 97.4 1.2E-05 2.6E-10 103.4 -4.9 236 1725-2066 69-322 (629)
252 PF00439 Bromodomain: Bromodom 97.4 2.7E-05 5.9E-10 76.6 -1.4 57 1730-1787 12-79 (84)
253 cd05529 Bromo_WDR9_I_like Brom 97.3 3.1E-05 6.8E-10 83.3 -1.2 60 1727-1787 40-111 (128)
254 cd04369 Bromodomain Bromodomai 97.3 3.2E-05 6.9E-10 76.9 -2.1 58 1729-1787 17-85 (99)
255 PF08880 QLQ: QLQ; InterPro: 97.2 0.00024 5.3E-09 61.2 3.3 34 473-507 2-35 (37)
256 cd05500 Bromo_BDF1_2_I Bromodo 97.2 3.9E-05 8.6E-10 79.4 -2.0 64 1730-1799 20-96 (103)
257 cd05494 Bromodomain_1 Bromodom 97.2 0.00016 3.4E-09 76.6 1.9 55 1941-1999 4-60 (114)
258 cd05492 Bromo_ZMYND11 Bromodom 97.2 7.8E-05 1.7E-09 78.3 -0.5 45 1736-1781 29-73 (109)
259 KOG0008 Transcription initiati 97.2 0.00024 5.1E-09 95.9 3.5 161 1880-2044 1294-1482(1563)
260 PF13871 Helicase_C_4: Helicas 97.0 0.00074 1.6E-08 81.2 5.9 75 1384-1461 52-137 (278)
261 PF07517 SecA_DEAD: SecA DEAD- 96.9 0.016 3.5E-07 69.8 15.8 120 998-1133 75-209 (266)
262 KOG1472 Histone acetyltransfer 96.9 0.00044 9.6E-09 90.7 3.0 91 1960-2051 303-393 (720)
263 PRK10536 hypothetical protein; 96.9 0.0024 5.1E-08 76.2 8.5 143 1001-1164 60-217 (262)
264 cd05501 Bromo_SP100C_like Brom 96.9 0.00021 4.7E-09 74.2 -0.3 47 1732-1781 20-67 (102)
265 PF02562 PhoH: PhoH-like prote 96.8 0.0058 1.3E-07 70.9 10.4 147 1001-1165 5-161 (205)
266 KOG4150 Predicted ATP-dependen 96.8 0.0054 1.2E-07 77.4 10.1 128 1326-1456 508-644 (1034)
267 KOG0925 mRNA splicing factor A 96.7 0.2 4.4E-06 63.5 22.8 104 1344-1453 254-385 (699)
268 PF07529 HSA: HSA; InterPro: 96.5 0.01 2.2E-07 57.8 8.0 63 808-870 11-73 (73)
269 PF09848 DUF2075: Uncharacteri 96.4 0.011 2.4E-07 73.4 9.5 90 1023-1135 5-97 (352)
270 PF13307 Helicase_C_2: Helicas 96.2 0.011 2.3E-07 66.3 7.4 103 1339-1448 5-145 (167)
271 smart00573 HSA domain in helic 96.2 0.016 3.5E-07 57.0 7.6 60 811-870 14-73 (73)
272 PF13401 AAA_22: AAA domain; P 96.2 0.0078 1.7E-07 63.1 5.9 115 1019-1159 4-125 (131)
273 COG0553 HepA Superfamily II DN 96.2 0.0033 7.1E-08 85.4 3.8 179 1000-1181 84-289 (866)
274 PF13604 AAA_30: AAA domain; P 96.1 0.058 1.3E-06 62.0 12.8 125 1000-1161 1-132 (196)
275 cd00009 AAA The AAA+ (ATPases 95.9 0.081 1.8E-06 54.7 11.8 106 1019-1161 19-131 (151)
276 KOG1802 RNA helicase nonsense 95.6 0.06 1.3E-06 69.9 11.1 132 1000-1141 410-588 (935)
277 KOG1803 DNA helicase [Replicat 95.6 0.068 1.5E-06 69.4 11.4 150 999-1161 184-393 (649)
278 KOG1131 RNA polymerase II tran 95.5 0.047 1E-06 69.3 9.4 67 992-1058 8-74 (755)
279 TIGR00376 DNA helicase, putati 95.5 0.13 2.9E-06 69.0 14.1 67 999-1071 156-223 (637)
280 KOG1828 IRF-2-binding protein 95.4 0.0027 5.8E-08 77.7 -1.6 66 1972-2038 48-113 (418)
281 KOG1132 Helicase of the DEAD s 95.3 0.083 1.8E-06 70.8 11.4 41 1000-1040 21-61 (945)
282 PRK12723 flagellar biosynthesi 95.3 0.37 8E-06 61.3 16.7 157 1021-1202 176-351 (388)
283 TIGR01447 recD exodeoxyribonuc 95.3 0.1 2.2E-06 69.3 12.3 139 1003-1161 148-297 (586)
284 KOG0008 Transcription initiati 95.2 0.017 3.7E-07 79.1 4.7 79 1963-2042 1281-1359(1563)
285 PF12340 DUF3638: Protein of u 95.2 0.1 2.3E-06 61.7 10.5 111 998-1112 21-143 (229)
286 KOG1474 Transcription initiati 94.9 0.0086 1.9E-07 79.8 0.8 73 1972-2045 23-95 (640)
287 TIGR02881 spore_V_K stage V sp 94.9 0.14 3E-06 61.2 10.8 26 1020-1045 43-68 (261)
288 PRK07764 DNA polymerase III su 94.7 0.17 3.8E-06 69.4 12.3 114 1023-1158 41-158 (824)
289 PRK14956 DNA polymerase III su 94.7 0.13 2.8E-06 66.6 10.4 41 1005-1045 23-66 (484)
290 PRK14949 DNA polymerase III su 94.3 0.15 3.3E-06 69.7 10.0 40 1120-1159 118-158 (944)
291 PRK10875 recD exonuclease V su 94.2 0.14 3E-06 68.5 9.3 141 1001-1161 153-303 (615)
292 TIGR01448 recD_rel helicase, p 94.2 0.14 3E-06 69.6 9.6 134 999-1162 322-455 (720)
293 PRK07003 DNA polymerase III su 94.2 0.24 5.1E-06 66.9 11.2 40 1120-1159 118-158 (830)
294 COG3421 Uncharacterized protei 93.7 0.07 1.5E-06 68.8 5.0 103 1026-1133 4-124 (812)
295 COG1875 NYN ribonuclease and A 93.5 0.2 4.4E-06 62.2 8.2 146 1003-1163 231-391 (436)
296 PLN03025 replication factor C 93.4 0.62 1.4E-05 57.4 12.3 49 1120-1168 98-147 (319)
297 smart00382 AAA ATPases associa 93.3 0.15 3.3E-06 52.0 5.9 42 1020-1064 3-44 (148)
298 cd05494 Bromodomain_1 Bromodom 93.3 0.038 8.2E-07 58.9 1.5 39 1730-1769 19-60 (114)
299 PRK07994 DNA polymerase III su 93.0 0.64 1.4E-05 62.5 12.3 39 1120-1158 118-157 (647)
300 KOG0951 RNA helicase BRR2, DEA 92.9 0.21 4.6E-06 68.9 7.8 110 1015-1137 1155-1269(1674)
301 PRK04296 thymidine kinase; Pro 92.9 0.22 4.7E-06 57.1 7.0 34 1022-1058 5-38 (190)
302 PRK12323 DNA polymerase III su 92.9 0.45 9.7E-06 63.6 10.6 23 1023-1045 42-64 (700)
303 PF13177 DNA_pol3_delta2: DNA 92.8 0.77 1.7E-05 51.5 11.0 134 1005-1162 2-144 (162)
304 CHL00181 cbbX CbbX; Provisiona 92.7 0.34 7.4E-06 59.2 8.7 46 1019-1064 59-105 (287)
305 TIGR02880 cbbX_cfxQ probable R 92.6 0.3 6.5E-06 59.5 8.0 43 1019-1061 58-101 (284)
306 KOG1805 DNA replication helica 92.6 0.47 1E-05 64.6 10.1 146 1000-1161 669-831 (1100)
307 cd05493 Bromo_ALL-1 Bromodomai 92.2 0.2 4.4E-06 54.6 5.1 68 1981-2048 56-123 (131)
308 PRK06526 transposase; Provisio 92.0 0.43 9.2E-06 57.5 8.2 35 1007-1045 90-124 (254)
309 TIGR02639 ClpA ATP-dependent C 92.0 5.3 0.00012 55.0 19.3 27 1019-1045 203-229 (731)
310 PRK14952 DNA polymerase III su 91.8 0.8 1.7E-05 61.1 11.0 132 1005-1158 18-156 (584)
311 PF13892 DBINO: DNA-binding do 91.7 3.6 7.8E-05 45.7 13.9 64 839-916 70-133 (139)
312 TIGR03420 DnaA_homol_Hda DnaA 91.7 1.5 3.3E-05 50.7 11.9 91 1019-1159 38-132 (226)
313 PRK12402 replication factor C 91.6 0.62 1.3E-05 57.0 9.2 39 1006-1044 21-61 (337)
314 PRK09112 DNA polymerase III su 91.5 0.53 1.1E-05 59.2 8.5 41 1005-1045 28-71 (351)
315 KOG1245 Chromatin remodeling c 91.2 0.041 8.8E-07 78.4 -1.6 49 1732-1781 1319-1368(1404)
316 PF05876 Terminase_GpA: Phage 91.1 0.27 5.9E-06 65.1 5.7 164 1000-1172 16-192 (557)
317 PRK08691 DNA polymerase III su 90.9 2.4 5.1E-05 57.5 13.9 46 1121-1166 119-165 (709)
318 PRK05703 flhF flagellar biosyn 90.6 3.1 6.7E-05 53.8 14.3 153 1021-1199 223-393 (424)
319 PHA02544 44 clamp loader, smal 90.5 1.9 4.2E-05 52.7 11.8 40 1121-1160 100-141 (316)
320 smart00492 HELICc3 helicase su 90.4 1.4 3E-05 48.8 9.5 46 1378-1425 32-79 (141)
321 PRK08181 transposase; Validate 90.3 1.8 3.9E-05 52.7 11.3 45 1001-1045 88-132 (269)
322 PRK09111 DNA polymerase III su 90.3 1.7 3.7E-05 58.3 11.9 41 1121-1161 132-173 (598)
323 PRK08451 DNA polymerase III su 90.1 1.3 2.9E-05 58.4 10.6 38 1121-1158 117-155 (535)
324 PRK05707 DNA polymerase III su 90.0 1 2.2E-05 56.2 9.1 45 1000-1045 3-48 (328)
325 PRK14960 DNA polymerase III su 90.0 1.4 3E-05 59.4 10.5 39 1120-1158 117-156 (702)
326 PRK11889 flhF flagellar biosyn 89.6 4.5 9.7E-05 52.0 14.1 154 1022-1204 244-418 (436)
327 PRK07952 DNA replication prote 89.6 2.2 4.8E-05 51.3 11.1 33 1021-1056 101-133 (244)
328 PRK14958 DNA polymerase III su 89.6 1.3 2.8E-05 58.4 9.9 42 1120-1161 118-160 (509)
329 PRK08116 hypothetical protein; 89.5 3.1 6.6E-05 50.6 12.3 47 1019-1068 114-160 (268)
330 PRK14962 DNA polymerase III su 89.5 1.8 4E-05 56.5 11.1 23 1022-1044 39-61 (472)
331 PRK14951 DNA polymerase III su 89.3 1.3 2.9E-05 59.4 9.8 41 1005-1045 21-64 (618)
332 smart00491 HELICc2 helicase su 89.1 1.4 3E-05 48.9 8.2 45 1381-1425 32-80 (142)
333 PRK14963 DNA polymerase III su 88.9 2.3 4.9E-05 56.1 11.4 41 1005-1045 19-62 (504)
334 PRK08769 DNA polymerase III su 88.9 2 4.4E-05 53.5 10.4 151 1000-1169 4-162 (319)
335 PRK14965 DNA polymerase III su 88.8 3.3 7.1E-05 55.5 12.9 114 1023-1158 42-157 (576)
336 TIGR02928 orc1/cdc6 family rep 88.7 2.5 5.5E-05 52.5 11.2 44 1002-1045 20-66 (365)
337 COG1484 DnaC DNA replication p 88.6 2.7 5.9E-05 50.7 10.9 67 1001-1070 87-153 (254)
338 PRK14964 DNA polymerase III su 88.5 3.2 6.9E-05 54.6 12.2 39 1121-1159 116-155 (491)
339 PHA02533 17 large terminase pr 88.4 3.1 6.6E-05 55.3 12.1 145 999-1160 58-210 (534)
340 PF06862 DUF1253: Protein of u 88.3 4.9 0.00011 52.2 13.4 114 1327-1442 281-398 (442)
341 PRK14957 DNA polymerase III su 88.0 1.9 4.2E-05 57.2 9.9 41 1005-1045 21-64 (546)
342 TIGR03015 pepcterm_ATPase puta 88.0 3.3 7.2E-05 49.2 11.1 39 1003-1041 26-65 (269)
343 PTZ00112 origin recognition co 87.8 3.1 6.6E-05 57.4 11.5 51 992-1045 753-807 (1164)
344 PRK07471 DNA polymerase III su 87.8 2.5 5.5E-05 53.5 10.4 42 1005-1046 24-68 (365)
345 PRK14969 DNA polymerase III su 87.7 2.6 5.6E-05 55.9 10.8 39 1120-1158 118-157 (527)
346 PF13173 AAA_14: AAA domain 87.2 2.9 6.2E-05 44.8 9.0 38 1121-1159 61-98 (128)
347 PRK08084 DNA replication initi 87.1 3.4 7.4E-05 49.1 10.4 25 1020-1044 46-70 (235)
348 PRK06645 DNA polymerase III su 87.0 3.2 6.9E-05 54.8 11.0 41 1005-1045 26-69 (507)
349 PF00448 SRP54: SRP54-type pro 87.0 2.1 4.4E-05 49.8 8.3 132 1023-1174 5-140 (196)
350 PRK14959 DNA polymerase III su 87.0 4.7 0.0001 54.3 12.5 24 1022-1045 41-64 (624)
351 PRK14948 DNA polymerase III su 86.8 2.3 5E-05 57.3 9.8 41 1005-1045 21-64 (620)
352 PRK14950 DNA polymerase III su 86.8 3.5 7.5E-05 55.4 11.4 40 1005-1044 21-63 (585)
353 PRK08727 hypothetical protein; 86.7 5.4 0.00012 47.4 11.7 24 1022-1045 44-67 (233)
354 PRK14961 DNA polymerase III su 86.6 3.2 6.9E-05 52.4 10.3 40 1005-1044 21-63 (363)
355 PRK14722 flhF flagellar biosyn 86.5 4 8.8E-05 52.0 11.1 126 1019-1169 137-267 (374)
356 TIGR02768 TraA_Ti Ti-type conj 86.4 4 8.7E-05 56.3 11.9 125 999-1161 351-478 (744)
357 PRK06835 DNA replication prote 86.3 6.1 0.00013 49.6 12.4 46 1000-1045 160-209 (329)
358 PF06733 DEAD_2: DEAD_2; Inte 86.1 0.82 1.8E-05 51.5 4.4 39 1097-1135 117-159 (174)
359 TIGR00595 priA primosomal prot 85.8 4.4 9.6E-05 53.5 11.4 97 1323-1423 5-102 (505)
360 KOG0921 Dosage compensation co 85.7 5.3 0.00012 54.5 11.7 136 1014-1158 388-534 (1282)
361 PRK00149 dnaA chromosomal repl 85.5 5.1 0.00011 52.0 11.6 98 1022-1158 151-252 (450)
362 COG0470 HolB ATPase involved i 85.3 3 6.4E-05 50.7 9.0 39 1120-1158 108-147 (325)
363 PRK08058 DNA polymerase III su 85.3 3.4 7.4E-05 51.6 9.6 132 1003-1158 9-148 (329)
364 PRK06647 DNA polymerase III su 85.2 4.5 9.7E-05 54.1 11.1 23 1023-1045 42-64 (563)
365 cd01124 KaiC KaiC is a circadi 85.2 0.8 1.7E-05 51.2 3.8 48 1022-1072 2-49 (187)
366 PRK07940 DNA polymerase III su 85.2 3.2 6.9E-05 53.2 9.4 24 1022-1045 39-62 (394)
367 PRK00440 rfc replication facto 85.1 9.7 0.00021 46.3 13.2 39 1121-1159 102-141 (319)
368 PRK06090 DNA polymerase III su 84.9 4.2 9.1E-05 50.8 10.0 145 1000-1169 3-157 (319)
369 PRK06921 hypothetical protein; 84.5 6.6 0.00014 47.8 11.3 27 1019-1045 117-143 (266)
370 cd01120 RecA-like_NTPases RecA 84.2 7.3 0.00016 41.7 10.4 33 1023-1058 3-35 (165)
371 PRK08903 DnaA regulatory inact 84.1 5.2 0.00011 46.8 9.9 26 1019-1044 42-67 (227)
372 PRK14953 DNA polymerase III su 84.0 5.2 0.00011 52.7 10.8 40 1005-1044 21-63 (486)
373 PF05621 TniB: Bacterial TniB 84.0 3.9 8.4E-05 50.6 9.0 46 1114-1159 138-189 (302)
374 PF00004 AAA: ATPase family as 83.9 2.8 6E-05 43.8 6.9 35 1023-1063 2-36 (132)
375 PRK05580 primosome assembly pr 83.7 6.2 0.00013 54.0 11.7 96 1324-1423 171-267 (679)
376 PRK05563 DNA polymerase III su 83.6 5.7 0.00012 53.2 11.0 23 1023-1045 42-64 (559)
377 PRK14974 cell division protein 83.4 10 0.00023 47.8 12.6 45 1022-1069 143-191 (336)
378 PRK14955 DNA polymerase III su 83.4 7.8 0.00017 49.6 11.8 41 1005-1045 21-64 (397)
379 PRK14087 dnaA chromosomal repl 83.0 9.8 0.00021 49.7 12.6 100 1022-1158 144-247 (450)
380 TIGR00362 DnaA chromosomal rep 82.9 6 0.00013 50.5 10.6 98 1022-1158 139-240 (405)
381 PF13245 AAA_19: Part of AAA d 82.9 3.6 7.8E-05 41.0 6.8 42 1022-1063 13-55 (76)
382 PRK07993 DNA polymerase III su 82.9 4.1 8.9E-05 51.1 8.9 47 1000-1046 2-51 (334)
383 PRK06871 DNA polymerase III su 82.8 5.5 0.00012 49.9 9.8 47 1000-1046 2-51 (325)
384 PRK07133 DNA polymerase III su 82.2 8.2 0.00018 52.9 11.8 55 1984-2042 635-689 (725)
385 TIGR03345 VI_ClpV1 type VI sec 82.0 4.3 9.4E-05 56.7 9.5 40 1005-1044 192-233 (852)
386 KOG0991 Replication factor C, 81.7 1.8 3.8E-05 51.5 4.7 102 1017-1155 46-148 (333)
387 PRK06893 DNA replication initi 81.6 9.3 0.0002 45.3 10.8 24 1022-1045 42-65 (229)
388 CHL00095 clpC Clp protease ATP 81.2 8.9 0.00019 53.6 12.0 26 1019-1044 200-225 (821)
389 PRK06964 DNA polymerase III su 81.1 6 0.00013 50.0 9.4 46 1001-1046 2-48 (342)
390 COG1474 CDC6 Cdc6-related prot 80.9 7.2 0.00016 49.7 10.0 50 1000-1049 20-72 (366)
391 PRK14088 dnaA chromosomal repl 80.7 12 0.00026 48.8 12.2 37 1022-1059 133-169 (440)
392 KOG0989 Replication factor C, 80.7 3.5 7.7E-05 50.9 6.9 42 1004-1045 40-83 (346)
393 PRK00080 ruvB Holliday junctio 80.3 19 0.00041 44.8 13.3 23 1020-1042 52-74 (328)
394 COG3267 ExeA Type II secretory 80.3 6.5 0.00014 47.7 8.8 110 1021-1159 53-173 (269)
395 PHA03333 putative ATPase subun 79.8 11 0.00025 51.1 11.5 148 1003-1160 172-332 (752)
396 TIGR03346 chaperone_ClpB ATP-d 79.8 7 0.00015 54.8 10.3 40 1005-1044 178-219 (852)
397 PRK14086 dnaA chromosomal repl 79.8 13 0.00029 50.1 12.3 98 1022-1158 317-418 (617)
398 PRK05642 DNA replication initi 79.7 13 0.00028 44.3 11.2 38 1121-1158 97-138 (234)
399 PRK13889 conjugal transfer rel 79.6 9.9 0.00021 53.9 11.5 127 998-1162 344-473 (988)
400 cd01121 Sms Sms (bacterial rad 79.3 5.8 0.00013 50.6 8.6 103 1006-1134 68-171 (372)
401 PRK05986 cob(I)alamin adenolsy 79.2 11 0.00023 44.2 9.9 137 1019-1174 22-169 (191)
402 TIGR00678 holB DNA polymerase 79.1 11 0.00025 42.8 10.1 24 1022-1045 17-40 (188)
403 PRK12724 flagellar biosynthesi 79.1 29 0.00063 45.2 14.5 156 1022-1205 226-401 (432)
404 PRK10865 protein disaggregatio 79.0 6.4 0.00014 55.2 9.6 40 1005-1044 183-224 (857)
405 PRK06731 flhF flagellar biosyn 78.7 41 0.00088 41.5 15.0 154 1019-1201 75-249 (270)
406 PRK00411 cdc6 cell division co 78.5 12 0.00026 47.3 11.0 44 1002-1045 35-81 (394)
407 PRK10917 ATP-dependent DNA hel 78.4 11 0.00024 51.6 11.3 97 1324-1422 291-391 (681)
408 PRK12727 flagellar biosynthesi 78.4 20 0.00043 47.9 13.0 38 1019-1057 350-387 (559)
409 PRK12377 putative replication 78.2 19 0.00042 43.6 12.1 44 1020-1066 102-145 (248)
410 COG0464 SpoVK ATPases of the A 78.2 5.4 0.00012 52.2 8.1 65 1001-1071 250-322 (494)
411 PF00580 UvrD-helicase: UvrD/R 77.6 3.5 7.7E-05 49.3 5.8 119 1001-1131 1-125 (315)
412 TIGR00708 cobA cob(I)alamin ad 76.8 5.4 0.00012 45.9 6.5 58 1114-1174 90-151 (173)
413 TIGR02688 conserved hypothetic 76.7 9.7 0.00021 49.4 9.3 56 1003-1064 193-249 (449)
414 COG1419 FlhF Flagellar GTP-bin 76.7 77 0.0017 41.2 17.0 133 1019-1177 203-341 (407)
415 PRK14954 DNA polymerase III su 76.6 8.3 0.00018 52.2 9.3 41 1005-1045 21-64 (620)
416 TIGR02397 dnaX_nterm DNA polym 76.6 12 0.00026 46.5 10.0 23 1023-1045 40-62 (355)
417 PF07015 VirC1: VirC1 protein; 76.1 18 0.00039 43.5 10.8 128 1029-1161 12-153 (231)
418 PRK05896 DNA polymerase III su 75.3 17 0.00037 49.1 11.4 41 1005-1045 21-64 (605)
419 PRK11823 DNA repair protein Ra 74.7 8.6 0.00019 50.2 8.4 103 1006-1134 66-169 (446)
420 PRK09183 transposase/IS protei 74.7 16 0.00035 44.3 10.2 42 1018-1062 101-142 (259)
421 PRK00771 signal recognition pa 74.4 14 0.00031 48.1 10.2 34 1021-1057 97-130 (437)
422 PRK12422 chromosomal replicati 74.4 8.3 0.00018 50.3 8.2 96 1022-1158 144-243 (445)
423 PRK04132 replication factor C 74.4 7.8 0.00017 54.0 8.3 48 1121-1168 630-678 (846)
424 PRK06305 DNA polymerase III su 74.4 13 0.00027 48.7 9.8 41 1005-1045 22-65 (451)
425 PRK07399 DNA polymerase III su 74.3 15 0.00033 45.8 10.1 41 1005-1045 9-52 (314)
426 PRK13342 recombination factor 73.9 12 0.00026 48.1 9.4 21 1021-1041 38-58 (413)
427 PRK04195 replication factor C 73.5 26 0.00056 46.2 12.4 24 1019-1042 39-62 (482)
428 PF05970 PIF1: PIF1-like helic 73.1 8.7 0.00019 48.7 7.8 61 1000-1063 1-63 (364)
429 TIGR01074 rep ATP-dependent DN 72.7 9.9 0.00021 51.7 8.7 105 1001-1132 2-112 (664)
430 PF00308 Bac_DnaA: Bacterial d 72.7 38 0.00083 40.1 12.4 37 1121-1157 97-137 (219)
431 KOG0737 AAA+-type ATPase [Post 72.5 12 0.00025 47.6 8.3 116 1018-1179 126-256 (386)
432 PRK11034 clpA ATP-dependent Cl 72.2 14 0.00031 51.1 10.0 26 1019-1044 207-232 (758)
433 PRK08699 DNA polymerase III su 72.2 14 0.00029 46.5 9.0 45 1001-1045 2-47 (325)
434 KOG0442 Structure-specific end 71.9 45 0.00098 46.2 13.9 46 1320-1365 345-400 (892)
435 PRK14971 DNA polymerase III su 71.7 40 0.00087 46.0 13.7 39 1121-1159 121-160 (614)
436 PRK06995 flhF flagellar biosyn 71.0 36 0.00079 45.1 12.7 34 1023-1057 260-293 (484)
437 TIGR01075 uvrD DNA helicase II 70.9 15 0.00032 50.7 9.7 105 1000-1132 4-114 (715)
438 PF03354 Terminase_1: Phage Te 70.8 17 0.00037 47.7 9.9 131 1003-1145 1-145 (477)
439 cd00984 DnaB_C DnaB helicase C 70.7 13 0.00029 43.6 8.1 46 1019-1066 13-62 (242)
440 KOG0952 DNA/RNA helicase MER3/ 70.7 3.6 7.7E-05 57.0 3.7 114 1015-1136 939-1061(1230)
441 PF13191 AAA_16: AAA ATPase do 70.5 20 0.00044 39.7 9.1 45 1002-1046 5-51 (185)
442 KOG0740 AAA+-type ATPase [Post 69.7 6.5 0.00014 50.8 5.5 46 1021-1072 188-233 (428)
443 COG4098 comFA Superfamily II D 69.6 26 0.00057 44.1 10.3 96 1036-1135 291-387 (441)
444 TIGR00643 recG ATP-dependent D 69.6 22 0.00048 48.4 10.8 97 1324-1422 265-365 (630)
445 PRK10919 ATP-dependent DNA hel 68.7 11 0.00024 51.5 7.9 106 1000-1132 2-113 (672)
446 PRK14873 primosome assembly pr 68.3 23 0.00049 48.6 10.5 95 1325-1423 170-266 (665)
447 PF13481 AAA_25: AAA domain; P 68.2 24 0.00052 39.9 9.2 55 1019-1073 32-93 (193)
448 TIGR03689 pup_AAA proteasome A 68.0 20 0.00044 47.6 9.6 26 1019-1044 216-241 (512)
449 COG0593 DnaA ATPase involved i 67.9 24 0.00053 45.6 10.0 39 1121-1159 175-219 (408)
450 PRK11773 uvrD DNA-dependent he 67.6 13 0.00028 51.3 8.1 104 1000-1131 9-118 (721)
451 cd01122 GP4d_helicase GP4d_hel 66.8 13 0.00027 44.7 7.0 48 1009-1058 20-67 (271)
452 PRK13826 Dtr system oriT relax 66.2 31 0.00066 49.7 11.3 127 999-1163 380-509 (1102)
453 PF01443 Viral_helicase1: Vira 65.7 6.6 0.00014 45.6 4.2 41 1120-1163 61-101 (234)
454 TIGR03499 FlhF flagellar biosy 65.2 20 0.00044 44.0 8.3 36 1021-1057 196-231 (282)
455 PHA03368 DNA packaging termina 65.1 24 0.00052 48.0 9.4 103 1023-1135 258-366 (738)
456 PTZ00454 26S protease regulato 64.9 32 0.0007 44.4 10.4 42 1019-1066 179-220 (398)
457 PHA03372 DNA packaging termina 64.9 22 0.00048 47.8 9.0 108 1016-1135 200-313 (668)
458 PRK14712 conjugal transfer nic 64.6 36 0.00079 50.6 11.8 62 1000-1063 835-897 (1623)
459 PRK03992 proteasome-activating 64.6 19 0.00041 46.2 8.2 40 1020-1065 166-205 (389)
460 TIGR00064 ftsY signal recognit 64.4 74 0.0016 39.2 12.8 32 1023-1057 76-107 (272)
461 TIGR01243 CDC48 AAA family ATP 64.2 23 0.0005 49.0 9.5 38 1020-1063 213-250 (733)
462 TIGR01242 26Sp45 26S proteasom 63.6 26 0.00057 44.3 9.2 40 1020-1065 157-196 (364)
463 TIGR00580 mfd transcription-re 63.2 35 0.00077 48.5 11.1 95 1325-1421 482-580 (926)
464 PRK12726 flagellar biosynthesi 63.1 68 0.0015 41.6 12.4 45 1021-1068 208-256 (407)
465 CHL00176 ftsH cell division pr 62.9 44 0.00095 45.8 11.5 22 1020-1041 217-238 (638)
466 PRK05564 DNA polymerase III su 62.3 29 0.00063 42.9 9.1 38 1121-1158 93-131 (313)
467 PRK14723 flhF flagellar biosyn 62.1 65 0.0014 45.0 12.8 151 1023-1202 189-362 (767)
468 TIGR00763 lon ATP-dependent pr 62.0 3E+02 0.0065 38.9 19.4 23 1021-1043 349-371 (775)
469 PRK14721 flhF flagellar biosyn 61.8 89 0.0019 40.9 13.4 79 1121-1200 269-363 (420)
470 PRK06904 replicative DNA helic 61.8 5.2E+02 0.011 34.5 21.6 127 1006-1134 208-347 (472)
471 PRK13709 conjugal transfer nic 60.9 45 0.00097 50.3 11.7 62 1000-1063 967-1029(1747)
472 PRK10867 signal recognition pa 60.4 81 0.0018 41.4 12.8 34 1022-1057 103-136 (433)
473 PRK10263 DNA translocase FtsK; 60.0 17 0.00038 52.3 7.2 41 1020-1060 1011-1052(1355)
474 PRK10416 signal recognition pa 60.0 75 0.0016 40.0 12.0 32 1023-1057 118-149 (318)
475 PF05729 NACHT: NACHT domain 59.7 24 0.00052 38.2 6.9 26 1022-1047 3-28 (166)
476 cd00561 CobA_CobO_BtuR ATP:cor 59.2 44 0.00095 38.2 9.0 132 1023-1172 6-147 (159)
477 cd01125 repA Hexameric Replica 59.1 27 0.00059 41.5 7.8 52 1021-1072 3-66 (239)
478 KOG0738 AAA+-type ATPase [Post 59.1 38 0.00082 43.6 9.0 46 1020-1072 246-292 (491)
479 TIGR01547 phage_term_2 phage t 59.0 19 0.00042 45.8 7.0 131 1023-1161 5-142 (396)
480 PRK06067 flagellar accessory p 59.0 30 0.00066 40.8 8.1 35 1021-1058 27-61 (234)
481 PRK06620 hypothetical protein; 58.7 54 0.0012 38.8 10.0 100 1054-1159 18-122 (214)
482 TIGR03878 thermo_KaiC_2 KaiC d 58.4 63 0.0014 39.2 10.8 33 1022-1057 39-71 (259)
483 COG0552 FtsY Signal recognitio 58.4 48 0.001 41.9 9.8 122 1023-1166 143-276 (340)
484 cd03115 SRP The signal recogni 58.3 1.3E+02 0.0029 33.7 12.7 24 1022-1045 3-26 (173)
485 PRK13849 putative crown gall t 58.1 45 0.00098 39.9 9.4 38 1028-1068 11-50 (231)
486 COG1198 PriA Primosomal protei 57.5 24 0.00053 48.7 7.7 81 1323-1406 225-306 (730)
487 PF01695 IstB_IS21: IstB-like 57.3 26 0.00055 40.3 6.9 43 1017-1062 45-87 (178)
488 COG4626 Phage terminase-like p 57.2 52 0.0011 44.0 10.2 169 999-1181 60-249 (546)
489 TIGR00665 DnaB replicative DNA 56.6 2.3E+02 0.0049 36.9 16.0 52 1006-1059 182-233 (434)
490 KOG0780 Signal recognition par 56.3 29 0.00064 44.4 7.5 98 1023-1140 105-202 (483)
491 PRK10689 transcription-repair 56.3 56 0.0012 47.6 11.3 95 1324-1420 630-728 (1147)
492 TIGR00959 ffh signal recogniti 56.2 51 0.0011 43.1 10.0 34 1022-1057 102-135 (428)
493 PRK08533 flagellar accessory p 56.1 60 0.0013 38.8 9.9 44 1019-1065 24-71 (230)
494 PRK13341 recombination factor 55.8 34 0.00073 47.5 8.8 22 1020-1041 53-74 (725)
495 PRK14970 DNA polymerase III su 55.6 1.1E+02 0.0023 38.8 12.6 40 1005-1044 22-64 (367)
496 TIGR02640 gas_vesic_GvpN gas v 55.6 29 0.00063 42.0 7.4 49 1003-1057 5-53 (262)
497 PF05496 RuvB_N: Holliday junc 55.6 11 0.00025 45.1 3.8 16 1021-1036 52-67 (233)
498 TIGR00416 sms DNA repair prote 55.5 33 0.00072 45.0 8.3 103 1006-1134 80-183 (454)
499 TIGR00767 rho transcription te 55.4 22 0.00048 46.0 6.5 24 1018-1041 167-190 (415)
500 PTZ00293 thymidine kinase; Pro 55.3 72 0.0016 38.1 10.2 35 1023-1060 8-42 (211)
No 1
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.5e-162 Score=1503.75 Aligned_cols=960 Identities=39% Similarity=0.594 Sum_probs=803.8
Q ss_pred cChHHHHHHHHHHHHHH--HHHHHHHhhhhhhhhhhhhccCChhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----H
Q 000101 703 YDVKDLLSEEGLEVLQK--KRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQE----I 776 (2239)
Q Consensus 703 ~d~~~~~~~~~~~~~~~--~R~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ie~k~l~ll~~q~~lr~~~~~~~~~----~ 776 (2239)
||+..+...++++++.+ .+.++++++++.+ .++++++|.||+++|||+++|++||..++.|+.. .
T Consensus 128 l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~---------~~~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~ 198 (1157)
T KOG0386|consen 128 LDQQNINPMQQARIQFRMQAQLQELQQLARSL---------MGELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSE 198 (1157)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhhcc---------hHHHhhhhhhhhHHHHhHHHHHHHhhhhhcccccccccc
Confidence 99999999999988776 4899999988865 2689999999999999999999999999998643 3
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000101 777 MAMPDRQYRKFVRLCERQRVELMRQVQTSQKAM-----REK---QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHER 848 (2239)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----r~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~ 848 (2239)
++++...|++-+++..+. .+++++++++||-+ |.+ ++.+++.|.++|.+.|+....+..+++++|..||.+
T Consensus 199 ~~~n~~~~~R~~~q~~~~-~r~te~Le~qqr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~ 277 (1157)
T KOG0386|consen 199 TALNPKAFKRGKRQTLSE-ARLTEKLEKQQRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHAN 277 (1157)
T ss_pred cccCHHHHhhhhhhhHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667888888876654 55566655554432 233 378999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHhccCCCcchHHHHHHHHHhHhhhHHHHHHhhhhhHHhhhhHHHHHH
Q 000101 849 ILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEA 928 (2239)
Q Consensus 849 ~~~~~~kr~e~~~~~r~~~lk~~d~e~y~~ll~~~k~~~~~d~~~r~~~l~~lL~qte~~l~~l~~~v~~~k~~q~~~~~ 928 (2239)
++++++|+.++.+|+||.+||.||+|+|++|++++| |.| |++||+||++|+.+|+..|..++.. .
T Consensus 278 ~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~kl~dq~K-------d~R---l~~LL~qt~~yl~sL~s~Vk~qk~~--~--- 342 (1157)
T KOG0386|consen 278 QERERERRIDRIEKERASALKHNDEEGYRKLQDQKK-------DNR---LSQLLSQTDSYLPSLSSVVKGQKSE--N--- 342 (1157)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhcc-------ccH---HHHhhhhhhHHHHHHHHHHHHhhcc--c---
Confidence 999999999999999999999999999999999986 444 7899999999999999988766530 0
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhhhhhHHHhhhhhccCCCCCCchhhhhhhhhHhhhhhhccCCccccCCCChHHHHH
Q 000101 929 ANAAAAAARLQGL-SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIV 1007 (2239)
Q Consensus 929 ~~~~~~~~r~~gl-~~ee~~~~~~~~~ee~~i~~~f~e~~~p~~~s~~~kyy~lah~i~E~v~~qPs~L~ggtLRPYQle 1007 (2239)
.+. +..++......+..+ .+ ....+..+||.++|.|.|.+.+||+++.||+|++||+.
T Consensus 343 ----------~~~~~~~d~~~i~~~ak~~---------~~--d~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~ 401 (1157)
T KOG0386|consen 343 ----------PDANSASDISGISGSAKAD---------VD--DHAESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLH 401 (1157)
T ss_pred ----------cccchhhhhhhhhhhhcch---------hh--hhhhcchhHHHhcchhhhccccCcchhcCCCCchhhhh
Confidence 000 000000000000000 00 02234578999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhh
Q 000101 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQ 1087 (2239)
Q Consensus 1008 GLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~ 1087 (2239)
||+||+++|+|++|||||||||||||||+|++|+||++.++..||+|||||+++|.||..||.+|+|++..++|.|++..
T Consensus 402 GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~ 481 (1157)
T KOG0386|consen 402 GLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQ 481 (1157)
T ss_pred hhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhh-ccccceEEEecCCCCCCCHHH
Q 000101 1088 RSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDLKE 1166 (2239)
Q Consensus 1088 Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk-~Lka~rRLLLTGTPIQNnL~E 1166 (2239)
|+.+..++..++|+|++|||+++++++..|.+++|.||||||+|||||..|+++..|. .|.+++||||||||+||++.|
T Consensus 482 R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpE 561 (1157)
T KOG0386|consen 482 RSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPE 561 (1157)
T ss_pred HhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHH
Confidence 9999999999999999999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEE
Q 000101 1167 LWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIV 1246 (2239)
Q Consensus 1167 LwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~V 1246 (2239)
||+|||||+|.||+++..|.+||+.||.+.| +..+++.++.+++|+|||++|+||+|||+|++|+++||+|++.+
T Consensus 562 LWaLLNFlLP~IFnS~~~FeqWFN~PFantG-----ek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~v 636 (1157)
T KOG0386|consen 562 LWALLNFLLPNIFNSCKAFEQWFNQPFANTG-----EKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDV 636 (1157)
T ss_pred HHHHHHHhccchhhhHhHHHHHhhhhhhhcC-----CcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHh
Confidence 9999999999999999999999999999987 34568889999999999999999999999999999999999999
Q ss_pred EEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC----CccccchhhH
Q 000101 1247 LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP----YFSDLSKDFL 1322 (2239)
Q Consensus 1247 V~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p----~~~~~s~d~L 1322 (2239)
++|.||+.|+.+|.++.+.+.+.++. ....++++.|+|.+|+|||||||||+|.. +......+.+
T Consensus 637 iKC~mSalQq~lY~~m~~~g~l~~d~-----------~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL 705 (1157)
T KOG0386|consen 637 IKCDMSALQQSLYKQMQNKGQLLKDT-----------AKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDL 705 (1157)
T ss_pred hheehhhhhHhhhHHHHhCCCCCcCc-----------hhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHH
Confidence 99999999999999999988877665 12234678999999999999999999843 2333344789
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000101 1323 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1402 (2239)
Q Consensus 1323 i~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLS 1402 (2239)
++.||||++|++||++|+++|||||+||+||.++++|++||..++++|+||||+|+.++|..+++.||.|+++||+||+|
T Consensus 706 ~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Flls 785 (1157)
T KOG0386|consen 706 VRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLS 785 (1157)
T ss_pred HHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhccc
Q 000101 1403 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGK 1482 (2239)
Q Consensus 1403 TrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gk 1482 (2239)
|+|||+|||||+||||||||++|||++++||.+|+|||||+++|+|+++++|
T Consensus 786 tragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv---------------------------- 837 (1157)
T KOG0386|consen 786 TRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV---------------------------- 837 (1157)
T ss_pred ecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh----------------------------
Confidence 9999999999999999999999999999999999999999999999999884
Q ss_pred chhhhhHHHHHHHHHHHhhHHHHHHHHhccccCccCCHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHhcChHHHH
Q 000101 1483 DRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVE 1562 (2239)
Q Consensus 1483 d~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~kst~eErr~~Le~LL~~ee~~~e~~~~vp~deELN~~laRseeE~~ 1562 (2239)
++|||.|++. +.+|++++++||++|+||+++++++|+++|+.|++.+++.++ .+++++++||+||||+++|++
T Consensus 838 ----~sveE~il~~-a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~--~~v~~~~~ln~~larseeE~~ 910 (1157)
T KOG0386|consen 838 ----NSVEEKILAE-AFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEE--EEVPDDEVLNSMLARSEEEFE 910 (1157)
T ss_pred ----hHHHHHHHHH-HHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCcccc--ccCCcHHHHHHHHhcchHHHH
Confidence 8999999984 689999999999999999999999999999999998766544 779999999999999999999
Q ss_pred HHhhhhhhcCcc-------hhhhhhccchHHHhhcHHHHHHHHhhhccCCcccccccCCcccCcchhhHhhhcCCCCCCC
Q 000101 1563 LFDQMDEEFGWI-------EEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKY 1635 (2239)
Q Consensus 1563 lf~~mD~e~~~~-------~~l~e~~elp~~~~~~~~e~~~~~~~~~k~~~k~~~~~~s~~~~~ke~~~err~~~~~kk~ 1635 (2239)
+|.+||.|+.|. .++++++++|+|+.....+.+.... . ++......++.+.||+
T Consensus 911 ~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~i~~~~~~~~~~~~----~---------------~~~~~~~~rg~r~Rke 971 (1157)
T KOG0386|consen 911 LFHKMDEERRATENQQEKKPRLVEEAELPADIYKRDQGVERLSE----E---------------EEEEKILGRGRRARKE 971 (1157)
T ss_pred HHHHhhHHHHhhhhhccccchhhhhhhcHHHHHhcchhhhhhhh----h---------------hhhhccccccccccce
Confidence 999999998663 3789999999999776666543221 0 0001112456666677
Q ss_pred cccccccccccccccccccccCCC-c-ccccccccCCCccccccCCCCCCCCCCCCCcCCCCcccCCCccCcccccccch
Q 000101 1636 PNYKEVDDEIGEYSEASSDERNGY-P-VQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNN 1713 (2239)
Q Consensus 1636 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ge~~e~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 1713 (2239)
-.|..... ++.+-.+.|++.++. + +....|...-..|+........ ...+--| ..+.. ...
T Consensus 972 v~y~d~~t-e~q~~k~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~---~~~~~-i~~ 1034 (1157)
T KOG0386|consen 972 VVYSDRLT-EMQWLKENESVNKEDSEEEERRRGRKKSSLDTRPLSQKKR------------KLRPRSP---KQALK-IAS 1034 (1157)
T ss_pred eecccccc-hhhhhhhccccccccchhhhhccCCCccccccccchhhcc------------cccCCCh---HHHHH-HHH
Confidence 77663322 222211111110000 0 0011122111111111100000 1111111 22222 222
Q ss_pred hhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C
Q 000101 1714 HVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S 1782 (2239)
Q Consensus 1714 ~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~ 1782 (2239)
.+.... +++||.+++.| ++||++.|||||.||++|+++.+ |...|+.+.|.++.++.+||.+ .
T Consensus 1035 ~~~~~~-----~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~e 1108 (1157)
T KOG0386|consen 1035 TSIKYK-----DSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDK-IKKRIENHKYNSLKELEKDFMLLFNNARTYNEE 1108 (1157)
T ss_pred HHHhcc-----cccccccchhcccCcccccccchHHHhcchhhHHH-HhhhccccccchHHHHHHHHHhhcchhhhhccC
Confidence 333333 55899999999 99999999999999999999999 9999999999999999999998 8
Q ss_pred CCccccCCcccccccccccccccc
Q 000101 1783 GSWTHDRDEGEDEQVLQPKIKRKR 1806 (2239)
Q Consensus 1783 ~Sw~~~~~~~~d~~~~~~~~~rkr 1806 (2239)
|||++ +|+.+++.+..-++
T Consensus 1109 gs~~y-----~d~~~l~~~~~~~~ 1127 (1157)
T KOG0386|consen 1109 GSRVY-----EDAIVLQSVFKSAR 1127 (1157)
T ss_pred Cceec-----hhHHHHHHHHhhhH
Confidence 99999 99999995544433
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=4.8e-107 Score=991.13 Aligned_cols=510 Identities=43% Similarity=0.721 Sum_probs=449.3
Q ss_pred hhccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000101 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2239)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~ 1067 (2239)
....+|..+.+|+||+||++||+||+++|.|+.|||||||||||||+|+|+++.|+...++..||+|||||.+++.||.+
T Consensus 155 ~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~ 234 (971)
T KOG0385|consen 155 RFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMN 234 (971)
T ss_pred cccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHH
Confidence 34458999998999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHCCCCceEEEecchhhHHHHHHHH-hhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhc
Q 000101 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQV-AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1146 (2239)
Q Consensus 1068 Ef~KwaPslkvvvy~Gskd~Rk~l~~~i-~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~ 1146 (2239)
||.+|+|++.+++|+|.+.+|..+...+ ..+.|+||||||++++++.+.|.++.|.|+||||||||||.+|++++.|+.
T Consensus 235 Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~ 314 (971)
T KOG0385|consen 235 EFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILRE 314 (971)
T ss_pred HHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHH
Confidence 9999999999999999999998887764 445999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
|.+.+||||||||+||||.|||+|||||+|.+|++.+.|..||..... +.....+.+||.+|+||
T Consensus 315 f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~---------------~~~~e~v~~Lh~vL~pF 379 (971)
T KOG0385|consen 315 FKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC---------------EGDQELVSRLHKVLRPF 379 (971)
T ss_pred hcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc---------------ccCHHHHHHHHhhhhHH
Confidence 999999999999999999999999999999999999999999975311 11122688999999999
Q ss_pred HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000101 1227 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1306 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnH 1306 (2239)
+|||+|.+|++.||+|.+.+++|.|+..|++.|..+.......+..... ..-..|+|++|+|||||||
T Consensus 380 lLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~------------~~k~kL~NI~mQLRKccnH 447 (971)
T KOG0385|consen 380 LLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGK------------GEKTKLQNIMMQLRKCCNH 447 (971)
T ss_pred HHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccccc------------chhhHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999987654333222110 0235799999999999999
Q ss_pred CCCCCCC---ccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000101 1307 PLLNYPY---FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1307 P~L~~p~---~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRq 1383 (2239)
||||... ....+.+.++..|||+.+|+++|++|++.||||||||||+.++|||++||.+++|.|+||||+|+.++|.
T Consensus 448 PYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~ 527 (971)
T KOG0385|consen 448 PYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEERE 527 (971)
T ss_pred ccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHH
Confidence 9998753 2244667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhh
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 1463 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~ 1463 (2239)
..|+.||.+++.+|||||||+|||+||||++|||||+||+||||+.++||++|||||||+|+|.||+|++
T Consensus 528 ~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit---------- 597 (971)
T KOG0385|consen 528 DAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT---------- 597 (971)
T ss_pred HHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccC-ccCCHHHHHHHHHHHHhhhhcc-cccc
Q 000101 1464 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFD-QRTTHEERRMTLETLLHDEERY-QETV 1541 (2239)
Q Consensus 1464 eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD-~kst~eErr~~Le~LL~~ee~~-~e~~ 1541 (2239)
-++||++|+++ +..|+.++..||+.|... .++.. .....+-.|++-+... .+..
T Consensus 598 ----------------------entVEe~IveR-A~~KL~Ld~~VIq~g~l~~~~~~~-~~k~~~l~~~r~g~~~~f~~~ 653 (971)
T KOG0385|consen 598 ----------------------ENTVEEKIVER-AAAKLRLDKLVIQQGRLEEQKSNG-LGKDELLNLLRFGADPVFESK 653 (971)
T ss_pred ----------------------cchHHHHHHHH-HHHHhchhhhhhccCchhhhhccc-cchHHHHHHHHcCchhhhhhc
Confidence 27999999997 467999999999999433 22322 2333455555543222 1112
Q ss_pred cCCCCHHHHHHHHhcChH
Q 000101 1542 HDVPSLQEVNRMIARSED 1559 (2239)
Q Consensus 1542 ~~vp~deELN~~laRsee 1559 (2239)
....++ +|..+|.|+++
T Consensus 654 es~~~d-Did~il~~~e~ 670 (971)
T KOG0385|consen 654 ESTISD-DIDRILERGEE 670 (971)
T ss_pred ccccch-hHHHHHHhhhh
Confidence 222333 88899888775
No 3
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=4.8e-98 Score=945.39 Aligned_cols=508 Identities=40% Similarity=0.668 Sum_probs=441.1
Q ss_pred hhhhccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000101 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 986 ~E~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW 1065 (2239)
..++..||..+.+.+||+||++||+||+..|.++.|||||||||||||||+|++|.+|+.....+||||||||.+++.+|
T Consensus 356 ~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W 435 (1373)
T KOG0384|consen 356 FRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAW 435 (1373)
T ss_pred HHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHH
Confidence 34567899999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHCCCCceEEEecchhhHHHHHHH--Hhh-----cCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhh
Q 000101 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQ--VAA-----LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES 1138 (2239)
Q Consensus 1066 ~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~--i~~-----~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~S 1138 (2239)
..||..|+ .+++++|+|+...|.-+... ... .+|+++||||+++++|...|..++|.++|||||||+||..|
T Consensus 436 ~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~ 514 (1373)
T KOG0384|consen 436 EREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDES 514 (1373)
T ss_pred HHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHH
Confidence 99999999 99999999998887655433 222 37999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000101 1139 VLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1218 (2239)
Q Consensus 1139 KlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~R 1218 (2239)
+++..|..|...+|||+||||+||++.|||+|||||+|+-|.++..|...|.. .....+..
T Consensus 515 ~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-------------------~~e~~~~~ 575 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-------------------ETEEQVRK 575 (1373)
T ss_pred HHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-------------------hhHHHHHH
Confidence 99999999999999999999999999999999999999999999999987621 12235789
Q ss_pred HHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000101 1219 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1298 (2239)
Q Consensus 1219 LhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niIm 1298 (2239)
||.+|+||||||+|+||++.||+|.+.++.|+||..|+.+|++|+......+. +... ....+|+|++|
T Consensus 576 L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~Lt---------KG~~---g~~~~lLNimm 643 (1373)
T KOG0384|consen 576 LQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALT---------KGAK---GSTPSLLNIMM 643 (1373)
T ss_pred HHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHh---------ccCC---CCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999876432221 1110 11257999999
Q ss_pred HHHHHcCCCCCCCCCcccc-----------chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC
Q 000101 1299 ELRKTCNHPLLNYPYFSDL-----------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1367 (2239)
Q Consensus 1299 qLRKiCnHP~L~~p~~~~~-----------s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG 1367 (2239)
.|+||||||||+.+..+.+ ....++..|||+.+|++||.+|++.||||||||||+.++|||++||..++
T Consensus 644 ELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ 723 (1373)
T KOG0384|consen 644 ELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG 723 (1373)
T ss_pred HHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC
Confidence 9999999999987653322 23457899999999999999999999999999999999999999999999
Q ss_pred CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEE
Q 000101 1368 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1447 (2239)
Q Consensus 1368 iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~ 1447 (2239)
|+|.||||++..+-|+.+|+.||+++++-|||||||+|||+||||.+||||||||+||||++++||+.|||||||++.|.
T Consensus 724 ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~Vn 803 (1373)
T KOG0384|consen 724 YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVN 803 (1373)
T ss_pred CcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCccCCH--HHHHH
Q 000101 1448 VIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH--EERRM 1525 (2239)
Q Consensus 1448 VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~kst~--eErr~ 1525 (2239)
||||++ .+|||+-|+++ +..|+.++..||+.+.++...+. .-...
T Consensus 804 VYRLVT--------------------------------k~TvEeEilER-Ak~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ 850 (1373)
T KOG0384|consen 804 VYRLVT--------------------------------KNTVEEEILER-AKLKMVLDHAVIQRMDTKGKTSKSNPFSKE 850 (1373)
T ss_pred EEEEec--------------------------------CCchHHHHHHH-HHHHhhhHHHHHHhhccccccCCCCCCCHH
Confidence 999987 48999999996 58899999999998876332221 12234
Q ss_pred HHHHHHhhhhc--ccc--cccCCCCHHHHHHHHhcCh
Q 000101 1526 TLETLLHDEER--YQE--TVHDVPSLQEVNRMIARSE 1558 (2239)
Q Consensus 1526 ~Le~LL~~ee~--~~e--~~~~vp~deELN~~laRse 1558 (2239)
.|.+||+-+.. +.+ .....+...+|.+||.|.+
T Consensus 851 ELsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae 887 (1373)
T KOG0384|consen 851 ELSAILKFGAYELFKEEENEESKFCEMDIDEILERAE 887 (1373)
T ss_pred HHHHHHHhchHHhhhccccccccccccCHHHHHhhcc
Confidence 56666663211 111 1122333455677776643
No 4
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=6.8e-93 Score=853.18 Aligned_cols=463 Identities=40% Similarity=0.736 Sum_probs=415.1
Q ss_pred hhccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000101 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2239)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~ 1067 (2239)
.-..||.+|. ++|++||++||+||+.+|..+.|||||||||||||+|+|+++++|.+.+..+||||||+|.++|.||..
T Consensus 556 ~tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaq 634 (1185)
T KOG0388|consen 556 RTVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQ 634 (1185)
T ss_pred eeccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHH
Confidence 3457999996 499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCceEEEecchhhHHHHHHH-------HhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHH
Q 000101 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQ-------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 1140 (2239)
Q Consensus 1068 Ef~KwaPslkvvvy~Gskd~Rk~l~~~-------i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKl 1140 (2239)
||.+|+|.++++.|.|+..+|+.+... .+...|+|+||||+.+..|...|.+++|.|+|+|||+.||...|.+
T Consensus 635 EisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~R 714 (1185)
T KOG0388|consen 635 EISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSR 714 (1185)
T ss_pred HHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhH
Confidence 999999999999999999999876543 2446899999999999999999999999999999999999999999
Q ss_pred HHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000101 1141 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1220 (2239)
Q Consensus 1141 skaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLh 1220 (2239)
|+.|..|+|..|||||||||||+..|||+||+|++|.+|++..+|.+||.+.+....... .......+.|||
T Consensus 715 WKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~--------~tlneqqL~RLH 786 (1185)
T KOG0388|consen 715 WKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMN--------TTLNEQQLQRLH 786 (1185)
T ss_pred HHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhc--------CCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876542211 111223578999
Q ss_pred HhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000101 1221 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1300 (2239)
Q Consensus 1221 klLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqL 1300 (2239)
.+|+||||||.|++|..+|..|+++.++|.||..|..+|+.|..... ...+.+++|+|
T Consensus 787 ~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----------------------~~E~~~~vmQl 844 (1185)
T KOG0388|consen 787 AILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----------------------SMEMENLVMQL 844 (1185)
T ss_pred HHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh----------------------HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998865321 12334589999
Q ss_pred HHHcCCCCCCCCC-------------------------------------------------------------------
Q 000101 1301 RKTCNHPLLNYPY------------------------------------------------------------------- 1313 (2239)
Q Consensus 1301 RKiCnHP~L~~p~------------------------------------------------------------------- 1313 (2239)
|++||||-||...
T Consensus 845 rKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w 924 (1185)
T KOG0388|consen 845 RKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAW 924 (1185)
T ss_pred HHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchh
Confidence 9999999663100
Q ss_pred c---------ccc-------------------------------------------------------------------
Q 000101 1314 F---------SDL------------------------------------------------------------------- 1317 (2239)
Q Consensus 1314 ~---------~~~------------------------------------------------------------------- 1317 (2239)
+ ..+
T Consensus 925 ~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~ 1004 (1185)
T KOG0388|consen 925 YLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDL 1004 (1185)
T ss_pred cccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCc
Confidence 0 000
Q ss_pred --------------chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000101 1318 --------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1318 --------------s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRq 1383 (2239)
..+..+..|||+..|+.+|++|++.|||||+|+||+.|+|+|++||..++|.|+||||+.+..+|.
T Consensus 1005 E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRr 1084 (1185)
T KOG0388|consen 1005 ENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRR 1084 (1185)
T ss_pred cccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHH
Confidence 001125568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhh
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 1463 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~ 1463 (2239)
.++.+|+. +++|||||||+|||+||||++||||||||++|||+.+.||++||||+||+++|+||+|++
T Consensus 1085 d~vrDwQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~---------- 1152 (1185)
T KOG0388|consen 1085 DVVRDWQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT---------- 1152 (1185)
T ss_pred HHHhhccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecc----------
Confidence 99999996 899999999999999999999999999999999999999999999999999999999965
Q ss_pred hhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCc
Q 000101 1464 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 1516 (2239)
Q Consensus 1464 eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~ 1516 (2239)
.++|||+|+++ +..|..+...|+.+++|..
T Consensus 1153 ----------------------rgTvEEk~l~r-A~qK~~vQq~Vm~G~~~qg 1182 (1185)
T KOG0388|consen 1153 ----------------------RGTVEEKVLER-ANQKDEVQQMVMHGNIFQG 1182 (1185)
T ss_pred ----------------------cccHHHHHHHH-hhhHHHHHHHHHcCCcccC
Confidence 37999999996 4678899999999988853
No 5
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.7e-92 Score=873.18 Aligned_cols=485 Identities=41% Similarity=0.729 Sum_probs=427.6
Q ss_pred ccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000101 990 MRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (2239)
Q Consensus 990 ~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef 1069 (2239)
+..|++|. |.||+||..||+||+.+|++++|||||||||||||||+|+|+++|...+++|||+|||||++++.||..||
T Consensus 606 tpvPsLLr-GqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMEl 684 (1958)
T KOG0391|consen 606 TPVPSLLR-GQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMEL 684 (1958)
T ss_pred cCchHHHH-HHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHH
Confidence 35577775 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCceEEEecchhhHHHHHHH-HhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccc
Q 000101 1070 HKWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR 1148 (2239)
Q Consensus 1070 ~KwaPslkvvvy~Gskd~Rk~l~~~-i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lk 1148 (2239)
++|||+++++.|+|+..+|+..... .....|+|+||+|..+..|...|...+|.|+||||||+|||+.+.+|++|..|+
T Consensus 685 KRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfn 764 (1958)
T KOG0391|consen 685 KRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFN 764 (1958)
T ss_pred hhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccc
Confidence 9999999999999999998776543 445679999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1149 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1149 a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
+++||||||||++|++.|||+|++||+|.+|.+.+.|..||..|+....... .+.....+.|||++|+||+|
T Consensus 765 sqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgs--------qeyn~klV~RLHkVlrPfiL 836 (1958)
T KOG0391|consen 765 SQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGS--------QEYNHKLVIRLHKVLRPFIL 836 (1958)
T ss_pred hhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccc--------hhhchHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999986542111 11223468899999999999
Q ss_pred hHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1229 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1229 RRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
||+|.||+++||.|.+++|+|.||..|+.||+.+..... .+..+. .+.+-++.|++|+||||||||.
T Consensus 837 RRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~-------TKetLk------SGhfmsVlnilmqLrKvCNHPn 903 (1958)
T KOG0391|consen 837 RRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPG-------TKETLK------SGHFMSVLNILMQLRKVCNHPN 903 (1958)
T ss_pred HHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccc-------hhhHhh------cCchhHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999997754321 111111 2346688999999999999996
Q ss_pred CCCCCc--------------------------------------------------------------------------
Q 000101 1309 LNYPYF-------------------------------------------------------------------------- 1314 (2239)
Q Consensus 1309 L~~p~~-------------------------------------------------------------------------- 1314 (2239)
||.+..
T Consensus 904 LfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~ 983 (1958)
T KOG0391|consen 904 LFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPI 983 (1958)
T ss_pred cCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCC
Confidence 621000
Q ss_pred --------------------cc----------------------------------------------------------
Q 000101 1315 --------------------SD---------------------------------------------------------- 1316 (2239)
Q Consensus 1315 --------------------~~---------------------------------------------------------- 1316 (2239)
..
T Consensus 984 pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~ 1063 (1958)
T KOG0391|consen 984 PTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIV 1063 (1958)
T ss_pred ccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeec
Confidence 00
Q ss_pred -----------------c--------------------------------------------------------------
Q 000101 1317 -----------------L-------------------------------------------------------------- 1317 (2239)
Q Consensus 1317 -----------------~-------------------------------------------------------------- 1317 (2239)
+
T Consensus 1064 sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~ 1143 (1958)
T KOG0391|consen 1064 SVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIY 1143 (1958)
T ss_pred cccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHh
Confidence 0
Q ss_pred --c-----hh----------------------------------------------------------------------
Q 000101 1318 --S-----KD---------------------------------------------------------------------- 1320 (2239)
Q Consensus 1318 --s-----~d---------------------------------------------------------------------- 1320 (2239)
. .+
T Consensus 1144 ~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~ 1223 (1958)
T KOG0391|consen 1144 LVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRI 1223 (1958)
T ss_pred hccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHH
Confidence 0 00
Q ss_pred ------------------------------hHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeE
Q 000101 1321 ------------------------------FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVY 1370 (2239)
Q Consensus 1321 ------------------------------~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky 1370 (2239)
.+--+|||+..|.-+|..|+..|||||||+||+.|+|+|+.+|..+||.|
T Consensus 1224 ~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY 1303 (1958)
T KOG0391|consen 1224 LRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLY 1303 (1958)
T ss_pred HHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEE
Confidence 00113699999999999999999999999999999999999999999999
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1371 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1371 ~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+||||.|+.++|+.++++||. |..+|||||||+.||+||||+.||||||||.||||.++.||++|+|||||+++|+|||
T Consensus 1304 ~RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYR 1382 (1958)
T KOG0391|consen 1304 VRLDGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 1382 (1958)
T ss_pred EEecCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEE
Confidence 999999999999999999997 8899999999999999999999999999999999999999999999999999999999
Q ss_pred EehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCccCCHHHHHHHHHHH
Q 000101 1451 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETL 1530 (2239)
Q Consensus 1451 LvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~kst~eErr~~Le~L 1530 (2239)
|++ -.+||+.|+++. +.|.-+++.+|+.|.| +++.-....+.+|
T Consensus 1383 LIS--------------------------------e~TIEeniLkka-nqKr~L~evaiqggdf---Tt~ff~q~ti~dL 1426 (1958)
T KOG0391|consen 1383 LIS--------------------------------ERTIEENILKKA-NQKRMLDEVAIQGGDF---TTAFFKQRTIRDL 1426 (1958)
T ss_pred eec--------------------------------cchHHHHHHhhh-hHHHHHHHHhhccCCc---cHHHHhhhhHHHH
Confidence 976 168999999864 5688899999999999 7777777788888
Q ss_pred Hhh
Q 000101 1531 LHD 1533 (2239)
Q Consensus 1531 L~~ 1533 (2239)
|.-
T Consensus 1427 Fd~ 1429 (1958)
T KOG0391|consen 1427 FDV 1429 (1958)
T ss_pred hcC
Confidence 874
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=4.9e-88 Score=828.15 Aligned_cols=487 Identities=41% Similarity=0.660 Sum_probs=415.3
Q ss_pred hccCCcccc-CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000101 989 VMRQPSMLR-AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2239)
Q Consensus 989 v~~qPs~L~-ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~ 1067 (2239)
+..||..|. +.+|++||+.||+||.-+|.++++||||||||||||||+|++++||.+ .+..||+|||||.+++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq-~g~~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ-IGNPGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH-cCCCCCcEEEecchhHHHHHH
Confidence 456888886 459999999999999999999999999999999999999999999997 677999999999999999999
Q ss_pred HHHHHCCCCceEEEecchhhHHHHHHHHhhc--CccEEEEehhHHH---HhhhhcccCCceEEEecccccccChhhHHHH
Q 000101 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL--KFNVLVTTYEFIM---YDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1068 Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~--kfdVVITTYE~L~---kD~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
||.+|||.+++..|+|+..+|+++...+... .|+|+||||..+. .|+.+|...+|+|+|+||||.+||..|.+++
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 9999999999999999999999998876655 8999999999985 4688999999999999999999999999999
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCCh-HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR-KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~-k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhk 1221 (2239)
.|..+++.+||||||||+||+|.|||+||.|++|.+|.+. .++...|..--... ...+...+ ....|.|-..
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d---~d~e~~~l----~qerIsrAK~ 618 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSD---GDIENALL----SQERISRAKT 618 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCcc---chhhHHHH----HHHHHHHHHH
Confidence 9999999999999999999999999999999999999765 56766665321111 11111111 1225788999
Q ss_pred hhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1222 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1222 lLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
++.||+|||+|.+|+++||+|..++.+|+|+..|+.+|..+........ ....++. . ..+ -+.+|+||
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~------~~~~~ns----~-~~~-~~vlmqlR 686 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKL------NEVSKNS----E-LKS-GNVLMQLR 686 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhc------ccccccc----c-ccc-chHHHHHH
Confidence 9999999999999999999999999999999999999998765431100 0111110 0 011 46899999
Q ss_pred HHcCCCCCCCCCccc-------------------------------------------------cchhhHhhcccHHHHH
Q 000101 1302 KTCNHPLLNYPYFSD-------------------------------------------------LSKDFLVKSCGKLWIL 1332 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~-------------------------------------------------~s~d~Li~~SGKLelL 1332 (2239)
|++|||+|+...+.+ .-.+..|-.|||+..|
T Consensus 687 K~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L 766 (941)
T KOG0389|consen 687 KAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKL 766 (941)
T ss_pred HHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHH
Confidence 999999996432211 0123356789999999
Q ss_pred HHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCC
Q 000101 1333 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 1412 (2239)
Q Consensus 1333 drIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNL 1412 (2239)
..||++++..|+|||||||||.++|||+.+|..+++.|+||||+|...+|+.+|++||. +.++|||||||+|||.||||
T Consensus 767 ~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINL 845 (941)
T KOG0389|consen 767 KELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINL 845 (941)
T ss_pred HHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecc
Confidence 99999999999999999999999999999999999999999999999999999999997 77899999999999999999
Q ss_pred CcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHH
Q 000101 1413 QSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGL 1492 (2239)
Q Consensus 1413 qaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~ 1492 (2239)
+.||+||+||.++||..+.||.+||||+||+|+|+||+|++ .++|||.
T Consensus 846 t~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLIt--------------------------------k~TIEE~ 893 (941)
T KOG0389|consen 846 TCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLIT--------------------------------KSTIEEG 893 (941)
T ss_pred cccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEe--------------------------------cCcHHHH
Confidence 99999999999999999999999999999999999999987 4899999
Q ss_pred HHHHHHHhhHHHHHHHHhccccCccCCHHHHHHHHHHHHhh
Q 000101 1493 IRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHD 1533 (2239)
Q Consensus 1493 Ile~lqq~Kldi~dkVIqAGkFD~kst~eErr~~Le~LL~~ 1533 (2239)
|++ +++.|+.++..+...++-. ..+....+..||+.
T Consensus 894 I~~-lA~~KL~Le~~lt~~~k~~----~~e~~~~v~~lL~~ 929 (941)
T KOG0389|consen 894 ILR-LAKTKLALEADLTEDGKGV----EDEGEKTVGKLLET 929 (941)
T ss_pred HHH-HHHHhhhhhhhhccCccch----hhhhhhHHHHHHHH
Confidence 997 7889999988888765432 22333345555553
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=2.2e-86 Score=869.36 Aligned_cols=509 Identities=40% Similarity=0.715 Sum_probs=443.2
Q ss_pred hccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000101 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2239)
Q Consensus 989 v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~E 1068 (2239)
+..+|..+. ++|||||++||+||+.++.++.|||||||||||||+|+|+++.++....+..+|+|||||.+++.||..|
T Consensus 159 l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~E 237 (1033)
T PLN03142 159 LLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNE 237 (1033)
T ss_pred eccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHH
Confidence 456898887 6999999999999999999999999999999999999999999998877888999999999999999999
Q ss_pred HHHHCCCCceEEEecchhhHHHHHHH-HhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc
Q 000101 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY 1147 (2239)
Q Consensus 1069 f~KwaPslkvvvy~Gskd~Rk~l~~~-i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L 1147 (2239)
|.+|+|.+.+++|+|....|...... +....|+||||||+++.++...|.++.|++|||||||+|||..+++++++..+
T Consensus 238 i~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L 317 (1033)
T PLN03142 238 IRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLF 317 (1033)
T ss_pred HHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHh
Confidence 99999999999999998887665433 34567999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
.+.+||+|||||++|++.|||+||+||.|++|++...|..||...... ....++.+||.+|+||+
T Consensus 318 ~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~---------------~~~e~i~~L~~~L~pf~ 382 (1033)
T PLN03142 318 STNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN---------------DQQEVVQQLHKVLRPFL 382 (1033)
T ss_pred hcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc---------------chHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999999752110 11235778999999999
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
|||+|.+|...||++.+.+++|.||+.|+.+|..+.......+. .. .....+++++++||+||+||
T Consensus 383 LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~---------~g-----~~~~~LlnilmqLRk~cnHP 448 (1033)
T PLN03142 383 LRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN---------AG-----GERKRLLNIAMQLRKCCNHP 448 (1033)
T ss_pred hhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh---------cc-----ccHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999988654211110 00 12346788999999999999
Q ss_pred CCCCCCc---cccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000101 1308 LLNYPYF---SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1308 ~L~~p~~---~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqe 1384 (2239)
+++.... .......++..|+|+.+|+++|..+...|+||||||+|+.++++|+++|..+|+.|++|||+++.++|..
T Consensus 449 ~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~ 528 (1033)
T PLN03142 449 YLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDA 528 (1033)
T ss_pred HhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 9975322 2234566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhh
Q 000101 1385 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE 1464 (2239)
Q Consensus 1385 iL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~e 1464 (2239)
+|+.||.+++..+||||||+|||+||||+.||+||+||+||||+.++||+||+|||||+++|.||+|++
T Consensus 529 ~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt----------- 597 (1033)
T PLN03142 529 SIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT----------- 597 (1033)
T ss_pred HHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEe-----------
Confidence 999999888888999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCccCCHHHHHHHHHHHHhhhhcc-cccccC
Q 000101 1465 DELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERY-QETVHD 1543 (2239)
Q Consensus 1465 Ke~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~kst~eErr~~Le~LL~~ee~~-~e~~~~ 1543 (2239)
.+|||+.|+++ +..|+.++..|++.|.+..... .....|..|++-.... -.....
T Consensus 598 ---------------------~gTIEEkIler-a~~Kl~Ld~~Vi~~g~~~~~~~--~~~~eL~~ll~~ga~~~f~~~~~ 653 (1033)
T PLN03142 598 ---------------------EYTIEEKVIER-AYKKLALDALVIQQGRLAEQKT--VNKDELLQMVRYGAEMVFSSKDS 653 (1033)
T ss_pred ---------------------CCcHHHHHHHH-HHHHHHHHHHHHhcCccccccc--CCHHHHHHHHHhChHHhhhccCC
Confidence 38999999985 6789999999999998754321 1123455666532221 112234
Q ss_pred CCCHHHHHHHHhcChHHHH
Q 000101 1544 VPSLQEVNRMIARSEDEVE 1562 (2239)
Q Consensus 1544 vp~deELN~~laRseeE~~ 1562 (2239)
.+++++|+.+|+|+++...
T Consensus 654 ~~~~~did~il~~~~~~~~ 672 (1033)
T PLN03142 654 TITDEDIDRIIAKGEEATA 672 (1033)
T ss_pred CCCHHHHHHHHHhcHHHHH
Confidence 6789999999999987553
No 8
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2e-83 Score=789.05 Aligned_cols=467 Identities=34% Similarity=0.598 Sum_probs=404.4
Q ss_pred cCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000101 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2239)
Q Consensus 991 ~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~ 1070 (2239)
..|..+.. .|++||.+||+||+.+|.++.||||+||||||||||+|+|++.|.......+|+|||||.+++.||..||.
T Consensus 197 ~vPg~I~~-~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 197 KVPGFIWS-KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred cccHHHHH-HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 45655543 89999999999999999999999999999999999999999999976567799999999999999999999
Q ss_pred HHCCCCceEEEecchhh-H----------HHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhH
Q 000101 1071 KWLPSVSCIYYVGAKDQ-R----------SRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1139 (2239)
Q Consensus 1071 KwaPslkvvvy~Gskd~-R----------k~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SK 1139 (2239)
+|+|.+.+.+|+|+... | ..++........+|+||||+.+......+..+.|+|||+||+|+|+|++++
T Consensus 276 ~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~ 355 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSK 355 (923)
T ss_pred HhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccH
Confidence 99999999999998662 1 111111233456799999999999999999999999999999999999999
Q ss_pred HHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000101 1140 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1219 (2239)
Q Consensus 1140 lskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RL 1219 (2239)
++.+++.+++.+|++||||||||+|.|||+||+|+.|+.+++...|.+.|..|+..++......... .......-.|
T Consensus 356 islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv---~~aykca~~L 432 (923)
T KOG0387|consen 356 ISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQV---QTAYKCAVAL 432 (923)
T ss_pred HHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHH---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887765544322 2233345679
Q ss_pred HHhhhhHHhhHhHhhhhc-CCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000101 1220 HQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1298 (2239)
Q Consensus 1220 hklLrPFmLRRlKkDVek-dLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niIm 1298 (2239)
+.+|.||+|||+|.||.. .||.|.++|++|.||+.|+.+|..+.+...+ ..+... -..++.-+.
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v--------~~i~ng-------~~~~l~Gi~ 497 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEV--------NKILNG-------KRNCLSGID 497 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHH--------HHHHcC-------CccceechH
Confidence 999999999999999999 9999999999999999999999988654211 000000 112233467
Q ss_pred HHHHHcCCCCCCCCC--ccccchh--hHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHH-HcCCeEEee
Q 000101 1299 ELRKTCNHPLLNYPY--FSDLSKD--FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ-WRQLVYRRI 1373 (2239)
Q Consensus 1299 qLRKiCnHP~L~~p~--~~~~s~d--~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~-~rGiky~RL 1373 (2239)
-||++||||.++... ...-..+ ..+..|||+.+|..+|..+...|+|||+|+|...|+|+|+.+|. ..||.|+|+
T Consensus 498 iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRm 577 (923)
T KOG0387|consen 498 ILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRM 577 (923)
T ss_pred HHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEe
Confidence 799999999997653 2111222 46889999999999999999999999999999999999999999 799999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1374 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1374 DGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
||.|+...|..+|++||+ +..++||||+|+|||+||||+.||.||||||+|||..+.||..|||||||+|+|.||||++
T Consensus 578 DGtT~~~~R~~lVd~Fne-~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 578 DGTTPAALRQKLVDRFNE-DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred cCCCccchhhHHHHhhcC-CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEec
Confidence 999999999999999997 5678999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHh
Q 000101 1454 VVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1510 (2239)
Q Consensus 1454 VEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIq 1510 (2239)
.++|||.|+.+ +-+|..+.+.++.
T Consensus 657 --------------------------------~gTIEEkiY~r-QI~Kq~Ltn~il~ 680 (923)
T KOG0387|consen 657 --------------------------------AGTIEEKIYHR-QIFKQFLTNRILK 680 (923)
T ss_pred --------------------------------CCcHHHHHHHH-HHHHHHHHHHHhc
Confidence 37888888864 6688888888874
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=3.1e-81 Score=787.48 Aligned_cols=494 Identities=33% Similarity=0.555 Sum_probs=425.4
Q ss_pred CCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh------CCCCCeEEEechHHHHHH
Q 000101 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK------GNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k------~~~GP~LIVVP~SLLsQW 1065 (2239)
.|.-+. .+||.||.+||+|+..++..+++|||||+||||||+|+|++++.-...+ -...|.|||||.+|..+|
T Consensus 968 Ip~pI~-a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW 1046 (1549)
T KOG0392|consen 968 IPVPIS-AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHW 1046 (1549)
T ss_pred cccchh-HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHH
Confidence 344443 3899999999999999999999999999999999999999987654332 134589999999999999
Q ss_pred HHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhh
Q 000101 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1145 (2239)
Q Consensus 1066 ~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk 1145 (2239)
+.|+.+|+|.++++.|.|.+..|..+..+.. +.+|+||+|+.+++|...|.++.|.|+|+||+|-|||..++++++++
T Consensus 1047 ~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~~--~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavk 1124 (1549)
T KOG0392|consen 1047 KSEVKKFFPFLKVLQYVGPPAERRELRDQYK--NANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVK 1124 (1549)
T ss_pred HHHHHHhcchhhhhhhcCChHHHHHHHhhcc--ccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHHH
Confidence 9999999999999999999999988876544 67999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1146 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1146 ~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
.+++.+||+|||||+||++.|||+||+||+|+++|+.+.|.+.|.+|+........ ...+.+...+.+..||+.+-|
T Consensus 1125 qL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~---Sske~EaG~lAleaLHKqVLP 1201 (1549)
T KOG0392|consen 1125 QLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKS---SSKEQEAGVLALEALHKQVLP 1201 (1549)
T ss_pred HHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCccc---chhHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986543322 235567788899999999999
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
|+|||+|.||+++||||+...++|+|++.|+++|+.+.......+............. ....++..+..|||.||
T Consensus 1202 F~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt-----~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1202 FLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGT-----DKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCc-----chHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998776333222221111111110 14567788899999999
Q ss_pred CCCCCCCCcc----cc------chhhH--hhcccHHHHHHHHHHHHH--------------hcCCeEEEEEccHHHHHHH
Q 000101 1306 HPLLNYPYFS----DL------SKDFL--VKSCGKLWILDRILIKLQ--------------RTGHRVLLFSTMTKLLDIL 1359 (2239)
Q Consensus 1306 HP~L~~p~~~----~~------s~d~L--i~~SGKLelLdrIL~kLk--------------atGhKVLIFSQ~t~~LDIL 1359 (2239)
||.+...... .. ....+ +..++|+.+|..||.++- ..+||||||||+..++|++
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 9999754311 10 01122 567899999999999872 2579999999999999999
Q ss_pred HHHHHHc---CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhh
Q 000101 1360 EEYLQWR---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVAR 1436 (2239)
Q Consensus 1360 ed~L~~r---Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGR 1436 (2239)
++-|-.. .+.|.||||++++.+|.+++++||+ |..+.|+|++|.+||+||||+.||||||++-||||..++||+||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDR 1435 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDR 1435 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHH
Confidence 9888654 5679999999999999999999997 77889999999999999999999999999999999999999999
Q ss_pred hcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCc
Q 000101 1437 AHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 1516 (2239)
Q Consensus 1437 AhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~ 1516 (2239)
|||||||+.|.||||++ .|++||+|.. ++++|.++++.||++..-+.
T Consensus 1436 AHRIGQKrvVNVyRlIt--------------------------------rGTLEEKVMg-LQkFKmnvAntvInqqNasl 1482 (1549)
T KOG0392|consen 1436 AHRIGQKRVVNVYRLIT--------------------------------RGTLEEKVMG-LQKFKMNVANTVINQQNASL 1482 (1549)
T ss_pred HHhhcCceeeeeeeehh--------------------------------cccHHHHHhh-HHHHhhHHHHHHHhcccccc
Confidence 99999999999999976 3899999997 89999999999999988777
Q ss_pred cCCHHHHHHHHHHH
Q 000101 1517 RTTHEERRMTLETL 1530 (2239)
Q Consensus 1517 kst~eErr~~Le~L 1530 (2239)
.+.+.+....|..-
T Consensus 1483 ~tM~TdqLLdlF~~ 1496 (1549)
T KOG0392|consen 1483 ETMDTDQLLDLFTV 1496 (1549)
T ss_pred cccCHHHHHHHhcc
Confidence 77777766655553
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-64 Score=640.74 Aligned_cols=461 Identities=30% Similarity=0.447 Sum_probs=377.5
Q ss_pred CCChHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC----CCeEEEechHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNY----GPHLIIVPNAVLVNWKSE 1068 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~----GP~LIVVP~SLLsQW~~E 1068 (2239)
..|||||.+|+.||..... +..|||+||+||+|||+++|+||..++...+.+ ...|||||.+|+.||.+|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 4899999999999997653 456789999999999999999999999876653 356999999999999999
Q ss_pred HHHHCC--CCceEEEecchhhH-HHH---H-HHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHH
Q 000101 1069 LHKWLP--SVSCIYYVGAKDQR-SRL---F-SQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLA 1141 (2239)
Q Consensus 1069 f~KwaP--slkvvvy~Gskd~R-k~l---~-~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKls 1141 (2239)
|.+|.. .+..+.+.|..... ... . ........-|+|.+|+.+..+...+....+++||+||+|++||..+.++
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~~ 396 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLTL 396 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHHH
Confidence 999986 56676666665541 110 0 0112234568999999999998899999999999999999999999999
Q ss_pred HHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000101 1142 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221 (2239)
Q Consensus 1142 kaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhk 1221 (2239)
++|..+.+++|++|||||+||++.|+|++|+|++|+++++...|...|..|+...+.....+.+... ..-+..|..
T Consensus 397 kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~----~~rl~eL~~ 472 (776)
T KOG0390|consen 397 KALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER----EERLQELRE 472 (776)
T ss_pred HHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh----HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998876554433322221 223888999
Q ss_pred hhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1222 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1222 lLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
++..|++||+-..+.+.||.+.+++|.|.+++.|..+|+.+.... .. .. .....+..+..|+
T Consensus 473 ~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~-------~~----------~~~~~l~~~~~L~ 534 (776)
T KOG0390|consen 473 LTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM-------RT----------LKGYALELITKLK 534 (776)
T ss_pred HHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh-------hh----------hhcchhhHHHHHH
Confidence 999999999999999999999999999999999999999887642 10 00 0011345678899
Q ss_pred HHcCCCCCCC-CCcc-----ccch------------hhHhhcccHHHHHHHHHHHHHhc-CCeEEEEEccHHHHHHHHHH
Q 000101 1302 KTCNHPLLNY-PYFS-----DLSK------------DFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEY 1362 (2239)
Q Consensus 1302 KiCnHP~L~~-p~~~-----~~s~------------d~Li~~SGKLelLdrIL~kLkat-GhKVLIFSQ~t~~LDILed~ 1362 (2239)
++||||.|.. .... .... ..-...++|+..|+.+|..+++. -.++++.++++.++++++..
T Consensus 535 k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~ 614 (776)
T KOG0390|consen 535 KLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQL 614 (776)
T ss_pred HHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHH
Confidence 9999999863 1100 0000 01123478999999998665433 34666667899999999999
Q ss_pred HHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCC
Q 000101 1363 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1442 (2239)
Q Consensus 1363 L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQ 1442 (2239)
++++|+.+++|||+|+..+|+.+|+.||++.+..||||+|++|||+||||..|++||+||++|||+.+.||++||||.||
T Consensus 615 ~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQ 694 (776)
T KOG0390|consen 615 CRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQ 694 (776)
T ss_pred HhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCC
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhcccc
Q 000101 1443 KREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF 1514 (2239)
Q Consensus 1443 kKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkF 1514 (2239)
+|.|+||+|++ .++|||.|+.+ +..|..+-..|++...-
T Consensus 695 Kk~v~iYrLla--------------------------------tGtiEEk~~qr-q~~K~~lS~~v~~~~~~ 733 (776)
T KOG0390|consen 695 KKPVYIYRLLA--------------------------------TGTIEEKIYQR-QTHKEGLSSMVFDEEED 733 (776)
T ss_pred cceEEEEEeec--------------------------------CCCchHHHHHH-HHHhhhhhheEEecccc
Confidence 99999999977 26677777763 45565555555554433
No 11
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=3.8e-63 Score=608.20 Aligned_cols=553 Identities=25% Similarity=0.376 Sum_probs=412.1
Q ss_pred hhhhccCCccccCCCChHHHHHHHHHHHHhhc---------CCCCeEEEcCCCchHHHHHHHHHHHHH-HHhCCCCCeEE
Q 000101 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLYN---------NKLNGILADEMGLGKTVQVMALIAYLM-EFKGNYGPHLI 1055 (2239)
Q Consensus 986 ~E~v~~qPs~L~ggtLRPYQleGLqwLlsL~~---------n~lnGILADEMGLGKTIQAIALIa~Li-e~k~~~GP~LI 1055 (2239)
.+.....|..|.. +|+|||..||+||+.... .+.|||||+-||||||+|+|+|+..++ ..+-....+||
T Consensus 655 ~e~~VqV~rslv~-kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLv 733 (1567)
T KOG1015|consen 655 KEPLVQVHRSLVI-KLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALV 733 (1567)
T ss_pred ccchhhccHhHHh-hcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEE
Confidence 3455566766664 899999999999997653 578899999999999999999987654 34566778999
Q ss_pred EechHHHHHHHHHHHHHCCCCce----EEE----ecchhhHHHHHHHHhhcCccEEEEehhHHHHh--------------
Q 000101 1056 IVPNAVLVNWKSELHKWLPSVSC----IYY----VGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD-------------- 1113 (2239)
Q Consensus 1056 VVP~SLLsQW~~Ef~KwaPslkv----vvy----~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD-------------- 1113 (2239)
|||.+++.||.+||.+|.+++.. -+| +..+..|...+..+... -.|+|.-|++++..
T Consensus 734 V~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~-ggVmIiGYdmyRnLa~gr~vk~rk~ke~ 812 (1567)
T KOG1015|consen 734 VCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQED-GGVMIIGYDMYRNLAQGRNVKSRKLKEI 812 (1567)
T ss_pred EcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhc-CCEEEEehHHHHHHhcccchhhhHHHHH
Confidence 99999999999999999986322 122 22334454444444433 38999999998653
Q ss_pred -hhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCC
Q 000101 1114 -RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQP 1192 (2239)
Q Consensus 1114 -~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kP 1192 (2239)
...|..-..++|||||||.|||..+.+++++..+++.+||+|||||+||||.|++++++|+.|+++++..+|...|..|
T Consensus 813 f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNp 892 (1567)
T KOG1015|consen 813 FNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNP 892 (1567)
T ss_pred HHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCc
Confidence 1234445789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCc
Q 000101 1193 FQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1272 (2239)
Q Consensus 1193 f~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~ 1272 (2239)
+.++...+....+...... ..+.|+.+|.-|+-|+--..+.+.||||.++||.+.||+.|..||..+..+..-. ..
T Consensus 893 I~nGq~~dST~~DVr~Mk~---RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~-G~ 968 (1567)
T KOG1015|consen 893 IQNGQCADSTMVDVRVMKK---RSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGV-GN 968 (1567)
T ss_pred cccCccCCCcHHHHHHHHH---HHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhcccc-CC
Confidence 9998777665543322222 3466899999999999888899999999999999999999999999988743211 11
Q ss_pred hhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC------------------CCc---c----------------
Q 000101 1273 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY------------------PYF---S---------------- 1315 (2239)
Q Consensus 1273 ~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~------------------p~~---~---------------- 1315 (2239)
..+. ..+.-+.|+....-|++|++||+... .++ .
T Consensus 969 d~eg---------~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ 1039 (1567)
T KOG1015|consen 969 DSEG---------GRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKK 1039 (1567)
T ss_pred cccc---------ccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcc
Confidence 1111 01123567777888999999998610 000 0
Q ss_pred --------cc------------------------------------c-------------------------------hh
Q 000101 1316 --------DL------------------------------------S-------------------------------KD 1320 (2239)
Q Consensus 1316 --------~~------------------------------------s-------------------------------~d 1320 (2239)
+. . ..
T Consensus 1040 ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~ 1119 (1567)
T KOG1015|consen 1040 KSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADA 1119 (1567)
T ss_pred cccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhh
Confidence 00 0 00
Q ss_pred hHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH----------------------cCCeEEeecCCCC
Q 000101 1321 FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----------------------RQLVYRRIDGTTS 1378 (2239)
Q Consensus 1321 ~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~----------------------rGiky~RLDGsts 1378 (2239)
..+..|||+.+|.+||..+.+-|.|+|||+|....+|+|+.||.. +|..|.||||++.
T Consensus 1120 ~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~ 1199 (1567)
T KOG1015|consen 1120 EVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTT 1199 (1567)
T ss_pred hhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCccc
Confidence 123468999999999999999999999999999999999999962 3667999999999
Q ss_pred HHHHHHHHHHHhcC-CCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhh
Q 000101 1379 LEDRESAIVDFNSH-DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 1457 (2239)
Q Consensus 1379 ~eeRqeiL~~FNs~-ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEk 1457 (2239)
...|.++.+.||++ +-..++|||||+||++||||-+|+.|||||..|||.-+.|+|-|++|.||+|+|+||||++
T Consensus 1200 s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA---- 1275 (1567)
T KOG1015|consen 1200 SQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA---- 1275 (1567)
T ss_pred HHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh----
Confidence 99999999999986 4567899999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCccCCHHHHHHHHHHHHh--hhh
Q 000101 1458 ISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLH--DEE 1535 (2239)
Q Consensus 1458 I~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~kst~eErr~~Le~LL~--~ee 1535 (2239)
.+++|++|+++ +-.|..+.--|++.......-+.+ ....|+..-- ++.
T Consensus 1276 ----------------------------qGTmEeKIYkR-QVTKqsls~RVVDeqQv~Rhy~~n-eLteLy~fep~~ddp 1325 (1567)
T KOG1015|consen 1276 ----------------------------QGTMEEKIYKR-QVTKQSLSFRVVDEQQVERHYTMN-ELTELYTFEPDLDDP 1325 (1567)
T ss_pred ----------------------------cccHHHHHHHH-HHhHhhhhhhhhhHHHHHHHhhHh-hhHHHhhcCCccCCc
Confidence 26677777663 455555555555432211111111 1111222110 111
Q ss_pred cccccccCCCCHHHHHHHHhcChHHHHHHhhhhhh--c--CcchhhhhhccchHHHhh
Q 000101 1536 RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEE--F--GWIEEMTRYDQVPKWLRA 1589 (2239)
Q Consensus 1536 ~~~e~~~~vp~deELN~~laRseeE~~lf~~mD~e--~--~~~~~l~e~~elp~~~~~ 1589 (2239)
.-+......|.+-.+-+++.-..+ .++.+...+ . .-.++++++++-+.|..+
T Consensus 1326 ~sEr~~~~lpKdrllae~l~~~q~--~i~~y~ehdSll~~~e~eelteee~k~aWaey 1381 (1567)
T KOG1015|consen 1326 NSERDTPMLPKDRLLAELLQIHQE--HIVGYHEHDSLLDHKEEEELTEEERKAAWAEY 1381 (1567)
T ss_pred ccccccccCCchhHHHHHHHHHHH--HhhhhhhhhhhhcchhHHHHHHHhhhhhhhhH
Confidence 111123345666666666544433 233333222 1 123467777888888643
No 12
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-62 Score=646.07 Aligned_cols=470 Identities=40% Similarity=0.634 Sum_probs=401.7
Q ss_pred ccCCCChHHHHHHHHHHH-HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEechHHHHHHHHHHHHHC
Q 000101 996 LRAGTLRDYQIVGLQWML-SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPNAVLVNWKSELHKWL 1073 (2239)
Q Consensus 996 L~ggtLRPYQleGLqwLl-sL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~-~GP~LIVVP~SLLsQW~~Ef~Kwa 1073 (2239)
...++|++||++|++|+. .++....+|||||+||+|||+|+|+++.++++.... .+|+|||||.+++.||..||.+|+
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~ 413 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFA 413 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhC
Confidence 334689999999999999 899999999999999999999999999987665554 689999999999999999999999
Q ss_pred CCCc-eEEEecchhh----HHHHHHHHhhc---CccEEEEehhHHHH---hhhhcccCCceEEEecccccccChhhHHHH
Q 000101 1074 PSVS-CIYYVGAKDQ----RSRLFSQVAAL---KFNVLVTTYEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1074 Pslk-vvvy~Gskd~----Rk~l~~~i~~~---kfdVVITTYE~L~k---D~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
|.+. ++.++|.... +..+....... .|+|++|||+.+.. +...+..+.|+++|+||||++||..+..++
T Consensus 414 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~ 493 (866)
T COG0553 414 PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGK 493 (866)
T ss_pred ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHH
Confidence 9999 9999998753 33333323222 38999999999999 999999999999999999999999999999
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHh-hhcCcccC-ChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLN-LLLPEVFD-NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1220 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLn-FLlP~iF~-s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLh 1220 (2239)
++..+++.++++|||||++|++.|||++++ |++|++++ +...|..||..++........ .+.....+.+|+
T Consensus 494 ~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~ 566 (866)
T COG0553 494 ALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP-------LEARELGIELLR 566 (866)
T ss_pred HHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc-------hhhHHHHHHHHH
Confidence 999999999999999999999999999999 99999999 558999999999876543221 122233456699
Q ss_pred HhhhhHHhhHhHhh--hhcCCCCceEEEEEeccCHHHHHHHHHHHHhc---CcccCchhHHhhhhcChhhHHH--HHHHH
Q 000101 1221 QILEPFMLRRRVED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG---TLRVDPEDEKRRVQKNPIYQAK--VYKTL 1293 (2239)
Q Consensus 1221 klLrPFmLRRlKkD--VekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~---~l~l~~~~ek~~l~k~~~~~~k--~~ksL 1293 (2239)
.++.||+|||.|.+ +...||++.+.+++|.|+..|..+|..+.... ...+....... ... ... ....+
T Consensus 567 ~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~ 641 (866)
T COG0553 567 KLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKAD---SDE--NRIGDSELNI 641 (866)
T ss_pred HHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccc--ccccchhhHH
Confidence 99999999999999 89999999999999999999999999876622 11100000000 000 000 24567
Q ss_pred HHHHHHHHHHcCCCCCCCCC-cc---------------ccchhhHhhcc-cHHHHHHHHH-HHHHhcCC--eEEEEEccH
Q 000101 1294 NNRCMELRKTCNHPLLNYPY-FS---------------DLSKDFLVKSC-GKLWILDRIL-IKLQRTGH--RVLLFSTMT 1353 (2239)
Q Consensus 1294 ~niImqLRKiCnHP~L~~p~-~~---------------~~s~d~Li~~S-GKLelLdrIL-~kLkatGh--KVLIFSQ~t 1353 (2239)
.+.++.||++|+||.++... .. ......++..| +|+..++++| ..+...++ |||||++|+
T Consensus 642 l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t 721 (866)
T COG0553 642 LALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFT 721 (866)
T ss_pred HHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcH
Confidence 88999999999999998765 11 11223456778 9999999999 89999999 999999999
Q ss_pred HHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHh
Q 000101 1354 KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1433 (2239)
Q Consensus 1354 ~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQA 1433 (2239)
.++++|+.+|...++.|+++||+++...|..++++|+++ ..++|||+|++|||.||||+.|++||+||+||||..+.||
T Consensus 722 ~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa 800 (866)
T COG0553 722 PVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQA 800 (866)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHHH
Confidence 999999999999999999999999999999999999985 6789999999999999999999999999999999999999
Q ss_pred hhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhc
Q 000101 1434 VARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1511 (2239)
Q Consensus 1434 iGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqA 1511 (2239)
++|+|||||+++|.||++++ .++||+.|+. ++..|..+...++++
T Consensus 801 ~dRa~RigQ~~~v~v~r~i~--------------------------------~~tiEe~i~~-~~~~K~~l~~~~~~~ 845 (866)
T COG0553 801 IDRAHRIGQKRPVKVYRLIT--------------------------------RGTIEEKILE-LQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHhcCcceeEEEEeec--------------------------------CCcHHHHHHH-HHHHHHHHHHHHhhh
Confidence 99999999999999999976 3899999998 578899999999986
No 13
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=2e-61 Score=568.13 Aligned_cols=463 Identities=32% Similarity=0.455 Sum_probs=375.2
Q ss_pred hccCCccccCCCChHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000101 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2239)
Q Consensus 989 v~~qPs~L~ggtLRPYQleGLqwLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~ 1067 (2239)
-.+||.-|. ..|-|||++||.|+..... ...|||||||||.|||||+|+|++. .....|+|||||.-.+.||.+
T Consensus 174 ~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~n 248 (791)
T KOG1002|consen 174 RAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWKN 248 (791)
T ss_pred cccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHHH
Confidence 357898876 4899999999999998665 5578899999999999999999876 234568999999999999999
Q ss_pred HHHHHCC-CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh-----------------hhhcccCCceEEEecc
Q 000101 1068 ELHKWLP-SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD-----------------RSKLSKVDWKYIIIDE 1129 (2239)
Q Consensus 1068 Ef~KwaP-slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD-----------------~s~L~kikWd~VIIDE 1129 (2239)
||.++.. .+++.+|+|.+.... . .....|+||+|||..+-.. .+.|..++|..||+||
T Consensus 249 EI~~~T~gslkv~~YhG~~R~~n--i--kel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDE 324 (791)
T KOG1002|consen 249 EIERHTSGSLKVYIYHGAKRDKN--I--KELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDE 324 (791)
T ss_pred HHHHhccCceEEEEEecccccCC--H--HHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhh
Confidence 9999985 688999999864322 1 2345899999999887432 3567888999999999
Q ss_pred cccccChhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCCh---------------------------
Q 000101 1130 AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR--------------------------- 1182 (2239)
Q Consensus 1130 AHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~--------------------------- 1182 (2239)
||.||+..|...+++..+.+.+||+|||||+||++.|||+|+.||....|.-+
T Consensus 325 AH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~ 404 (791)
T KOG1002|consen 325 AHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNI 404 (791)
T ss_pred hcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchh
Confidence 99999999999999999999999999999999999999999999977665311
Q ss_pred H----HHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhc--CCCCceEEEEEeccCHHHH
Q 000101 1183 K----AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAIQS 1256 (2239)
Q Consensus 1183 k----~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVek--dLP~K~e~VV~c~MS~~Qr 1256 (2239)
. -|.....+|+...|... .........|.+|..+||||+|-+-.. .|||.+..+..--++..+.
T Consensus 405 m~h~~~~n~~mlk~IqkfG~eG----------pGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~ 474 (791)
T KOG1002|consen 405 MQHTCFFNHFMLKPIQKFGVEG----------PGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEK 474 (791)
T ss_pred hhhhhhhcccccccchhhcccC----------chHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHH
Confidence 0 11122223443333211 112234578889999999999876444 4899999999999999999
Q ss_pred HHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCC-----------------ccccch
Q 000101 1257 AIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY-----------------FSDLSK 1319 (2239)
Q Consensus 1257 ~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~-----------------~~~~s~ 1319 (2239)
.+|+.+........+...+.+.+.. .|..+...|.+||+.+.||+|+.-. ..+...
T Consensus 475 D~YeSLY~dSkrkfntyieeGvvlN-------NYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~ae 547 (791)
T KOG1002|consen 475 DLYESLYKDSKRKFNTYIEEGVVLN-------NYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAE 547 (791)
T ss_pred HHHHHHHHhhHHhhhhHHhhhhhhh-------hHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhh
Confidence 9999887655444444444444333 3778899999999999999984210 000000
Q ss_pred h-----------------------------------------------------------------hHhhcccHHHHHHH
Q 000101 1320 D-----------------------------------------------------------------FLVKSCGKLWILDR 1334 (2239)
Q Consensus 1320 d-----------------------------------------------------------------~Li~~SGKLelLdr 1334 (2239)
+ .-+..|.|++.|.+
T Consensus 548 d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~E 627 (791)
T KOG1002|consen 548 DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVE 627 (791)
T ss_pred hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHH
Confidence 0 01456778999988
Q ss_pred HHHHHHhcC--CeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCC
Q 000101 1335 ILIKLQRTG--HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 1412 (2239)
Q Consensus 1335 IL~kLkatG--hKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNL 1412 (2239)
-|..+.+.. -|.|||+||+.++|+|.-.|...|+.++.|.|+|+...|...|+.|.+ +.+|.|||+|.+|||+.|||
T Consensus 628 El~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVALNL 706 (791)
T KOG1002|consen 628 ELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVALNL 706 (791)
T ss_pred HHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEeee
Confidence 888876554 489999999999999999999999999999999999999999999986 89999999999999999999
Q ss_pred CcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHH
Q 000101 1413 QSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGL 1492 (2239)
Q Consensus 1413 qaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~ 1492 (2239)
+.|..|+++||||||+..-||++|+|||||.++|+|++|+. -++||++
T Consensus 707 teASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~i--------------------------------EnsiE~k 754 (791)
T KOG1002|consen 707 TEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCI--------------------------------ENSIEEK 754 (791)
T ss_pred chhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeeh--------------------------------hccHHHH
Confidence 99999999999999999999999999999999999999964 2789999
Q ss_pred HHHHHHHhhHHHHHHHHhc
Q 000101 1493 IRNNIQQYKIDMADEVINA 1511 (2239)
Q Consensus 1493 Ile~lqq~Kldi~dkVIqA 1511 (2239)
|++ +++.|.+|....|+.
T Consensus 755 Iie-LQeKKa~mihaTi~q 772 (791)
T KOG1002|consen 755 IIE-LQEKKANMIHATIGQ 772 (791)
T ss_pred HHH-HHHHHhhhhhhhcCC
Confidence 997 788888888877754
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.6e-59 Score=568.99 Aligned_cols=468 Identities=26% Similarity=0.413 Sum_probs=378.6
Q ss_pred hccCCccccCCCChHHHHHHHHHHHHhhcC-CCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH
Q 000101 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYNN-KLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA 1060 (2239)
Q Consensus 989 v~~qPs~L~ggtLRPYQleGLqwLlsL~~n-~lnGILADEMGLGKTIQAIALIa~Lie~k-------~~~GP~LIVVP~S 1060 (2239)
+++.|..+. ..|.|||+.|+.||+..... ..||||||+||||||+..|++|..-.... ....++|||||.+
T Consensus 315 lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS 393 (901)
T KOG4439|consen 315 LTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS 393 (901)
T ss_pred ccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH
Confidence 445676664 48999999999999976653 56789999999999999999997654321 1223699999999
Q ss_pred HHHHHHHHHHHHCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHH----------hhhhcccCCceEEEec
Q 000101 1061 VLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMY----------DRSKLSKVDWKYIIID 1128 (2239)
Q Consensus 1061 LLsQW~~Ef~KwaP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~k----------D~s~L~kikWd~VIID 1128 (2239)
|+.||..||.+-.. -+.|++|+|... |.--. .....|+||||||..+.+ ....|..+.|..||+|
T Consensus 394 li~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i~~--~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILD 470 (901)
T KOG4439|consen 394 LIHQWEAEVARRLEQNALSVYLYHGPNK-REISA--KELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILD 470 (901)
T ss_pred HHHHHHHHHHHHHhhcceEEEEecCCcc-ccCCH--HHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhh
Confidence 99999999998874 578899999864 21111 233489999999999876 1356888999999999
Q ss_pred ccccccChhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000101 1129 EAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1208 (2239)
Q Consensus 1129 EAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~ 1208 (2239)
|||.|+|+.++.+.+++.+.+..||+|||||++|++-|+|+|+.||.-..|++...|.+|+..+-..
T Consensus 471 EAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~------------- 537 (901)
T KOG4439|consen 471 EAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKG------------- 537 (901)
T ss_pred hhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCcccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999988644222
Q ss_pred HHHHHHHHHHHHHhhhhHHhhHhHhhhhc-----CCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCc-----------
Q 000101 1209 TEKKVIIIHRLHQILEPFMLRRRVEDVEG-----SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP----------- 1272 (2239)
Q Consensus 1209 ~ee~~lii~RLhklLrPFmLRRlKkDVek-----dLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~----------- 1272 (2239)
...||.-+.++.||||+|..+-. .||.+...++.+.|+..+...|+-+.......+..
T Consensus 538 ------g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~ 611 (901)
T KOG4439|consen 538 ------GANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNND 611 (901)
T ss_pred ------chhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 23467778899999999998766 79999999999999999999997654321111000
Q ss_pred -h-----------hHHhh------hhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccc------------------
Q 000101 1273 -E-----------DEKRR------VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD------------------ 1316 (2239)
Q Consensus 1273 -~-----------~ek~~------l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~------------------ 1316 (2239)
. .+... ......+.......++-.+++||++|+||.+....++.
T Consensus 612 ~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~ 691 (901)
T KOG4439|consen 612 GGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEE 691 (901)
T ss_pred cCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhh
Confidence 0 00000 00000111223344778899999999999552211100
Q ss_pred ----------------cc---------h--hhHhhcccHHHHHHHHHHHH-HhcCCeEEEEEccHHHHHHHHHHHHHcCC
Q 000101 1317 ----------------LS---------K--DFLVKSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQL 1368 (2239)
Q Consensus 1317 ----------------~s---------~--d~Li~~SGKLelLdrIL~kL-katGhKVLIFSQ~t~~LDILed~L~~rGi 1368 (2239)
.. . -...+.|.|+..+..+|..+ ..+..|++|.+||+.++++++..|...|+
T Consensus 692 ~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~ 771 (901)
T KOG4439|consen 692 DNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGH 771 (901)
T ss_pred hHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCe
Confidence 00 0 01234678999999998888 66789999999999999999999999999
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEE
Q 000101 1369 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1369 ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~V 1448 (2239)
.|..++|.+..++|+.+|+.||..++..+|+|||.-|||.||||..|+++|++|..|||+.+.||++|++|+||+|+|+|
T Consensus 772 ~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 772 IYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred eeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhcc
Q 000101 1449 IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1512 (2239)
Q Consensus 1449 yrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAG 1512 (2239)
|+|+. .++||++|.. ++.+|++++.-|+.+.
T Consensus 852 hR~~~--------------------------------~gTvEqrV~~-LQdkKldlA~~VL~G~ 882 (901)
T KOG4439|consen 852 HRLMC--------------------------------KGTVEQRVKS-LQDKKLDLAKGVLTGS 882 (901)
T ss_pred EEEEe--------------------------------cCcHHHHHHH-HHHHHHHHHhhhccCc
Confidence 99975 3899999997 8999999999999743
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1e-51 Score=500.09 Aligned_cols=481 Identities=32% Similarity=0.456 Sum_probs=367.4
Q ss_pred CChHHHHHHHHHHHHhh---------cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLY---------NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~---------~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~ 1070 (2239)
.|+|||+-||.||.... ..+.|||||+.||||||+|+|+|+--++. .-..+.+|+|||..+|.||..||.
T Consensus 254 v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR-hT~AKtVL~ivPiNTlQNWlsEfn 332 (1387)
T KOG1016|consen 254 VLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR-HTKAKTVLVIVPINTLQNWLSEFN 332 (1387)
T ss_pred hcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-cCccceEEEEEehHHHHHHHHHhh
Confidence 69999999999986422 25789999999999999999999988775 455678999999999999999999
Q ss_pred HHCCC-----------CceEEEec---chhhHHHHHHHHhhcCccEEEEehhHHHHh-----------------------
Q 000101 1071 KWLPS-----------VSCIYYVG---AKDQRSRLFSQVAALKFNVLVTTYEFIMYD----------------------- 1113 (2239)
Q Consensus 1071 KwaPs-----------lkvvvy~G---skd~Rk~l~~~i~~~kfdVVITTYE~L~kD----------------------- 1113 (2239)
.|.|. +.+.++.. +-+.|.....++. ..-.|++.-|++++-.
T Consensus 333 mWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv-~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i 411 (1387)
T KOG1016|consen 333 MWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWV-QTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFI 411 (1387)
T ss_pred hhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHh-ccCCEEEehHHHHHHHHHhcccccCCccccccccCCccc
Confidence 99975 22333322 2234444444333 2446999999988532
Q ss_pred ---------------hhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcc
Q 000101 1114 ---------------RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV 1178 (2239)
Q Consensus 1114 ---------------~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~i 1178 (2239)
...|.+-..++|||||+|||||....++.+|+.+++++|+.|||-|+||+|-|+|++++|+.|..
T Consensus 412 ~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~y 491 (1387)
T KOG1016|consen 412 KDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPKY 491 (1387)
T ss_pred CCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccccc
Confidence 12233446799999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHH
Q 000101 1179 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAI 1258 (2239)
Q Consensus 1179 F~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~L 1258 (2239)
+++..+|...|.+|+.++...+..-++..-. ....+.||.+|.-|+-||.-..+...||.+.++|+.+.||..|+.|
T Consensus 492 LGTR~eF~nmFErPI~NGQCvDStPdDvklm---ryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~L 568 (1387)
T KOG1016|consen 492 LGTRKEFINMFERPIKNGQCVDSTPDDVKLM---RYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQL 568 (1387)
T ss_pred cchHHHHHHHhhccccCCccccCChhHHHHH---HHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHH
Confidence 9999999999999999998877776654432 3346789999999999999999889999999999999999999999
Q ss_pred HHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccc----------------------
Q 000101 1259 YDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD---------------------- 1316 (2239)
Q Consensus 1259 Y~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~---------------------- 1316 (2239)
|+.+..... +....+... .+ .-+..+.-+.||+|||.+.|..+..
T Consensus 569 Y~~Fm~d~~---------r~~~~~~~~---~~-NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~ 635 (1387)
T KOG1016|consen 569 YRNFMLDAK---------REIAANNDA---VF-NPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQ 635 (1387)
T ss_pred HHHHHHHHH---------Hhhcccccc---cc-ChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhccccc
Confidence 987642211 000000000 00 0011233455666777553211000
Q ss_pred --------------------------------------------------cch-------hhHhhcccHHHHHHHHHHHH
Q 000101 1317 --------------------------------------------------LSK-------DFLVKSCGKLWILDRILIKL 1339 (2239)
Q Consensus 1317 --------------------------------------------------~s~-------d~Li~~SGKLelLdrIL~kL 1339 (2239)
+.. .-+...+.|+.++.+++.+-
T Consensus 636 ~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des 715 (1387)
T KOG1016|consen 636 QSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDES 715 (1387)
T ss_pred CCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccc
Confidence 000 00122234444555555555
Q ss_pred HhcCCeEEEEEccHHHHHHHHHHHHHcC------------------CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEE
Q 000101 1340 QRTGHRVLLFSTMTKLLDILEEYLQWRQ------------------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1401 (2239)
Q Consensus 1340 katGhKVLIFSQ~t~~LDILed~L~~rG------------------iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLL 1401 (2239)
..-|.|+|||++....+|.|+++|..+. ..|+++||.++..+|+++|++||++-+-...|||
T Consensus 716 ~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfll 795 (1387)
T KOG1016|consen 716 TQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLL 795 (1387)
T ss_pred cccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeee
Confidence 5668999999999999999999998652 4689999999999999999999985433358999
Q ss_pred eccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcc
Q 000101 1402 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAG 1481 (2239)
Q Consensus 1402 STrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~g 1481 (2239)
||++|..||||-.|+.+|+||..|||..+.||++|++|+||+|+|+||||+.
T Consensus 796 strag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVm---------------------------- 847 (1387)
T KOG1016|consen 796 STRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVM---------------------------- 847 (1387)
T ss_pred hhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehh----------------------------
Confidence 9999999999999999999999999999999999999999999999999964
Q ss_pred cchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCccCCHHHHHHHHHHHHhhhh
Q 000101 1482 KDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 1535 (2239)
Q Consensus 1482 kd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~kst~eErr~~Le~LL~~ee 1535 (2239)
..++|..|+.+ +-.|..|.+.|++.-.-+..- -+..++.||...+
T Consensus 848 ----D~~lEkkIydR-QIsKqGmsdRvVDd~np~an~----s~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 848 ----DNSLEKKIYDR-QISKQGMSDRVVDDANPDANI----SQKELENLLMYDE 892 (1387)
T ss_pred ----hhhhHHHHHHH-HHhhccchhhhhcccCccccc----cHHHHHHHhhhhh
Confidence 26788888874 556788888888654333222 2345677777543
No 16
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.9e-50 Score=528.27 Aligned_cols=436 Identities=19% Similarity=0.223 Sum_probs=312.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCce
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkv 1078 (2239)
..|.|||+..+.+++..+ ..+.||||||||||||+|++++.+++. .+..+++|||||.+|+.||..|+.+|+. +..
T Consensus 151 ~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~-~g~~~rvLIVvP~sL~~QW~~El~~kF~-l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLL-TGRAERVLILVPETLQHQWLVEMLRRFN-LRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHH-cCCCCcEEEEcCHHHHHHHHHHHHHHhC-CCe
Confidence 369999999998876543 456799999999999999999888775 5677899999999999999999988874 444
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh---hhcccCCceEEEecccccccCh---hhHHHHHhhcc--ccc
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY--RCQ 1150 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrIKN~---~SKlskaLk~L--ka~ 1150 (2239)
.++.+........-.......++++|+||+.+.++. ..+....|++|||||||++++. .++.++.+..+ ++.
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 555443221100000012235789999999998753 4566779999999999999853 46668888777 567
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcC--Cc-------ccCCCCCCCChhhHH-------------
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ--PF-------QKEGPTHNADDDWLE------------- 1208 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~k--Pf-------~~~g~~~~~e~d~l~------------- 1208 (2239)
++|+|||||++|+..|+|++|+||+|+.|++...|.+.... ++ .............+.
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 89999999999999999999999999999999999865432 11 011100000000000
Q ss_pred ---------HHHHHHHHHHHHH--hhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHH-HHHhcCcccCchhHH
Q 000101 1209 ---------TEKKVIIIHRLHQ--ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW-IKATGTLRVDPEDEK 1276 (2239)
Q Consensus 1209 ---------~ee~~lii~RLhk--lLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~-I~~~~~l~l~~~~ek 1276 (2239)
......++..|.. -...+|+|+++.+|. .+|.+..+.+.++|.+.....+.. +..
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~~~~~------------ 453 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKVSLEA------------ 453 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHHhHHH------------
Confidence 0001111111111 123678899999876 589999999999887654433321 000
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHH
Q 000101 1277 RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLL 1356 (2239)
Q Consensus 1277 ~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~L 1356 (2239)
.++. |.+|-..+..+. ....-+..+.|+..|..+|.... ++||||||++..++
T Consensus 454 ----------------------~~~~-~l~pe~~~~~~~--~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~ 506 (956)
T PRK04914 454 ----------------------RARD-MLYPEQIYQEFE--DNATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATA 506 (956)
T ss_pred ----------------------HHHh-hcCHHHHHHHHh--hhhhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHH
Confidence 0000 011100000000 00001234579999999888654 78999999999999
Q ss_pred HHHHHHH-HHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhh
Q 000101 1357 DILEEYL-QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 1435 (2239)
Q Consensus 1357 DILed~L-~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiG 1435 (2239)
+.|.+.| ...|+++..|||+++..+|.++++.|+.+++.+. |||||++||+||||+.|++||+||+||||..++||+|
T Consensus 507 ~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIG 585 (956)
T PRK04914 507 LQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIG 585 (956)
T ss_pred HHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHHhc
Confidence 9999999 4679999999999999999999999997544454 5788899999999999999999999999999999999
Q ss_pred hhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhcc
Q 000101 1436 RAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1512 (2239)
Q Consensus 1436 RAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAG 1512 (2239)
|+||+||++.|.||+++. .+++++.|... ...|+++.+.++..|
T Consensus 586 R~~RiGQ~~~V~i~~~~~--------------------------------~~t~~e~i~~~-~~~~l~ife~~~~~~ 629 (956)
T PRK04914 586 RLDRIGQKHDIQIHVPYL--------------------------------EGTAQERLFRW-YHEGLNAFEHTCPTG 629 (956)
T ss_pred ccccCCCCceEEEEEccC--------------------------------CCCHHHHHHHH-HhhhcCceeccCCCH
Confidence 999999999999998754 25777777763 355666666666554
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-48 Score=461.48 Aligned_cols=418 Identities=27% Similarity=0.333 Sum_probs=317.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceE
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvv 1079 (2239)
.|.|||++||.|.+. .+..+|||||||||||||||++..|+.. .+|.|||||.++...|..+|.+|+|.+..+
T Consensus 198 ~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyra----EwplliVcPAsvrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRA----EWPLLIVCPASVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhh----cCcEEEEecHHHhHHHHHHHHHhcccccce
Confidence 599999999999886 5666799999999999999999887653 469999999999999999999999987653
Q ss_pred E-EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc--ccceEEEec
Q 000101 1080 Y-YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLT 1156 (2239)
Q Consensus 1080 v-y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L--ka~rRLLLT 1156 (2239)
. ..++.+.-. .......|.|.||+.+......|..-+|.+||+||+|.+|+..++.++++..+ ...+.||||
T Consensus 271 ~vv~~~~D~~~-----~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLS 345 (689)
T KOG1000|consen 271 FVVDKSSDPLP-----DVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLS 345 (689)
T ss_pred EEEecccCCcc-----ccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEec
Confidence 2 223322110 01123468999999999999999999999999999999999999999988876 678899999
Q ss_pred CCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhh-hHHhhHhHhhh
Q 000101 1157 GTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE-PFMLRRRVEDV 1235 (2239)
Q Consensus 1157 GTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLr-PFmLRRlKkDV 1235 (2239)
|||.-..+.|||.++..+++.+|.+..+|-..|..--...-..+ -........|+.+|. ..|+||+|.+|
T Consensus 346 GTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D---------ykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 346 GTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD---------YKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred CCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee---------cCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876643211100000 000112345666664 45999999999
Q ss_pred hcCCCCceEEEEEeccCHHHHHHHHHHHHhcCc-ccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Q 000101 1236 EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTL-RVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF 1314 (2239)
Q Consensus 1236 ekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l-~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~ 1314 (2239)
+++||+|...++++ ....+-+..+.+...... ......++ .-...++..+.
T Consensus 417 L~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~t~~~~~e~---------------~~~~l~l~y~~------------ 468 (689)
T KOG1000|consen 417 LKQLPPKRREVVYV-SGGRIDARMDDLVKAAADYTKVNSMER---------------KHESLLLFYSL------------ 468 (689)
T ss_pred HhhCCccceEEEEE-cCCccchHHHHHHHHhhhcchhhhhhh---------------hhHHHHHHHHH------------
Confidence 99999997666554 333333333333221110 00000000 00000111110
Q ss_pred cccchhhHhhcccHHHHHHHHHHH----HHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1315 SDLSKDFLVKSCGKLWILDRILIK----LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1315 ~~~s~d~Li~~SGKLelLdrIL~k----LkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
..-.|+..+.+.|.. ..+.+.|+||||....++|-|..++..+++.++||||+|+..+|..+++.|+
T Consensus 469 ---------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ 539 (689)
T KOG1000|consen 469 ---------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ 539 (689)
T ss_pred ---------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc
Confidence 111244444443333 3456889999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccC
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSG 1470 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~ 1470 (2239)
. +.++.|-+||..|+|.||+|++|+.|||...+|||...+||.+|+|||||+..|.|+||++
T Consensus 540 ~-seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvA----------------- 601 (689)
T KOG1000|consen 540 T-SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVA----------------- 601 (689)
T ss_pred c-ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEe-----------------
Confidence 6 6788999999999999999999999999999999999999999999999999999999987
Q ss_pred CccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHH
Q 000101 1471 GTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVI 1509 (2239)
Q Consensus 1471 gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVI 1509 (2239)
++++++.++..+ +.|+++.+.+-
T Consensus 602 ---------------KgT~Ddy~Wp~l-~~KL~vl~s~g 624 (689)
T KOG1000|consen 602 ---------------KGTADDYMWPML-QQKLDVLGSVG 624 (689)
T ss_pred ---------------cCchHHHHHHHH-HHHHHHHhhcc
Confidence 478889998866 45777655554
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=3.5e-50 Score=506.37 Aligned_cols=387 Identities=40% Similarity=0.621 Sum_probs=344.2
Q ss_pred ccCCcccc--CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000101 990 MRQPSMLR--AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2239)
Q Consensus 990 ~~qPs~L~--ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~ 1067 (2239)
..+|..+. ++.|.+||.+|++|+...+..+-.+|||||||+|||+++|.++..++......+|+||++|.+++.||..
T Consensus 283 ~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~ 362 (696)
T KOG0383|consen 283 EDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWER 362 (696)
T ss_pred ccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCC
Confidence 36777665 4899999999999999999999999999999999999999999999887778899999999999999999
Q ss_pred HHHHHCCCCceEEEecchhhHHHHHHH--------------------HhhcCccEEEEehhHHHHhhhhcccCCceEEEe
Q 000101 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQ--------------------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIII 1127 (2239)
Q Consensus 1068 Ef~KwaPslkvvvy~Gskd~Rk~l~~~--------------------i~~~kfdVVITTYE~L~kD~s~L~kikWd~VII 1127 (2239)
++..|+|.+.++.|.|+...|.-+... .....|+|++++|+++..+...+..+.|.++|+
T Consensus 363 e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~liv 442 (696)
T KOG0383|consen 363 EFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIV 442 (696)
T ss_pred chhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEe
Confidence 999999999999999998876543211 234578999999999999999999999999999
Q ss_pred cccccccChhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000101 1128 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1207 (2239)
Q Consensus 1128 DEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l 1207 (2239)
||+|+++|..+++.+.+..+...++++|||||++|++.+|+++||||.|+.|++...|.+.|..-
T Consensus 443 de~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~--------------- 507 (696)
T KOG0383|consen 443 DEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI--------------- 507 (696)
T ss_pred echhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---------------
Confidence 99999999999999999999999999999999999999999999999999999998888766421
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHH
Q 000101 1208 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1287 (2239)
Q Consensus 1208 ~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~ 1287 (2239)
.....+..||.++.|++|||+|.||.+.+|.|.+.++.+.|++.|+.+|+.+.....-.+.. .
T Consensus 508 ---~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~--------------~ 570 (696)
T KOG0383|consen 508 ---SCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA--------------G 570 (696)
T ss_pred ---hHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh--------------c
Confidence 12235789999999999999999999999999999999999999999999987653211110 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCcc-----ccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHH
Q 000101 1288 KVYKTLNNRCMELRKTCNHPLLNYPYFS-----DLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 1362 (2239)
Q Consensus 1288 k~~ksL~niImqLRKiCnHP~L~~p~~~-----~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~ 1362 (2239)
..--.++|++|+|||+|+|||++..... ......++..++|+.+|..++++++..|||||||+||+.++|+|+++
T Consensus 571 ~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~ 650 (696)
T KOG0383|consen 571 VHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDY 650 (696)
T ss_pred chhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHH
Confidence 1235678999999999999999865221 12235578999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccc
Q 000101 1363 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 1409 (2239)
Q Consensus 1363 L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeG 1409 (2239)
|...+ .|.|+||..+..+|+.++++||.+++.-||||+||+|||+|
T Consensus 651 ~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 651 LTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999 99999999999999999999999999999999999999998
No 19
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.1e-50 Score=502.53 Aligned_cols=922 Identities=27% Similarity=0.223 Sum_probs=680.4
Q ss_pred CCCCccccccCCCCCCcccccccCccCcchHHHHHHHHhhhhcchHHHHhhcCCCcc-hhhhhcccCCCCcccCCCCCCC
Q 000101 8 SRNRAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQILRKPDGN-EAILAYQVGSLPGLMGGGNFAS 86 (2239)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (2239)
..+++.|+++|+++.+..+..+.++- +..|+++. +|+.-..-|+|.++..++| +...+|++|+.++|+++++|.+
T Consensus 14 ~~~~~~s~~~a~~~~sr~~~l~~~~~---~~~~~~~~-q~q~~~~~q~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 89 (1157)
T KOG0386|consen 14 PAGRTRSTISALSPLSRSSPLQQQQQ---QAVQQQQP-QQQLASRQQQQQHRPLDTNLENMFAYQPGGVQLMMGGGNFLS 89 (1157)
T ss_pred ccchhHHHHHhhhhhhhcCCCchhhH---HHHhhhhh-hhhhccHHHHhccCCCCCCcccccccCCCchhhccccccccC
Confidence 34777788888876665554443210 01111110 1111123366778888999 8899999999999999999999
Q ss_pred CCCCCCCCcchhhhhhHHhhhhhhhhccccccc-----cccccccHHHHHHHHHHHHHHhhhhhhHhHHhhhh--hcCCC
Q 000101 87 PPGSMQPPQQSRKFFDFAQQHAISQESQNRSQG-----VEHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAK--LGMLG 159 (2239)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 159 (2239)
+|++|++|+++|.||...++.+..+.-.+..++ .-++..|++|++|+|++++++.|+. |+++. |||++
T Consensus 90 ~p~~~~~~~~~r~~~~sp~~~~~~q~~~~~~~~~~~~~l~~~~~~~~q~~~i~~~~~~~lq~~-----q~~~~~~~~~~~ 164 (1157)
T KOG0386|consen 90 SPGSMQMPQQSRNFFESPQQPQQQQQQGSSTQEGKITPLDQQNINPMQQARIQFRMQAQLQEL-----QQLARSLMGELK 164 (1157)
T ss_pred CCCcccccCCCcccccCCCchhhhcccccccCcCccccCCcccccHHHHHHHHHHHHHHHHHH-----HHhhhcchHHHh
Confidence 999999999999999988765444443333333 4578999999999999999999887 77777 99999
Q ss_pred CCC-CcchhhhccchhhHHhhhhhhhhhhhhccCCCCch--hhhchhhhccCcccc----CccccCCCCCCCCCCcCccC
Q 000101 160 PAS-GKDQDMRMGNLKMQELISMQSANQAQASSSKNSSE--QFGRGEKQMEQPQQQ----VSDQKGEPKPPSQQTLGGQG 232 (2239)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 232 (2239)
.++ ++|++.||+++.||.. ....++-.++++++.+-. .|.|++.|+++.--. --.||.|...- ..+..+++
T Consensus 165 ~~a~~e~~~lrl~~~q~qlr-~~~~~~~~~~~~~~~~~n~~~~~R~~~q~~~~~r~te~Le~qqr~e~erk-~r~~~~~~ 242 (1157)
T KOG0386|consen 165 SSAVGEDQALRLLMLQMQLR-NPVSQPLRRDSSSETALNPKAFKRGKRQTLSEARLTEKLEKQQRLETERK-RRVKHGQF 242 (1157)
T ss_pred hhhhhhhHHHHhHHHHHHHh-hhhhcccccccccccccCHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 887 9999999999999987 344445567778877777 899999998887611 11233322211 56677999
Q ss_pred CCCccccccchhhHHhHHhhhhcchhHHHHHH---HHHHHhccCCCCCcccHhHHHHHhHhHHHHHHhhcccccCCCCCC
Q 000101 233 MAANIIRPMQAAQHQQSIQNAAGNQLAMAAQL---QAWALERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAP 309 (2239)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (2239)
|++++++|++.++.|+..+|+++++.+.++|| ++|+++++||.++++|++.|.+ .-|.+|.++.++.+.+..++
T Consensus 243 l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~~r~ek~r~~~Lk~---~DeE~Y~kl~dq~Kd~Rl~~ 319 (1157)
T KOG0386|consen 243 LPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRIDRIEKERASALKH---NDEEGYRKLQDQKKDNRLSQ 319 (1157)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH---hhHHHHHHHHhhccccHHHH
Confidence 99999999999999999999999999999999 6799999999999999888776 46779999999999999999
Q ss_pred CCCCCCCCccccccCccCCCC--CCCCCCCCccCCCCCCCCC---CCCCCCCCCCCcccccccccchhhcccccccCcCC
Q 000101 310 SSPVPVSKQQVTSPTIAGENS--PHANSSSDVSGQSGSAKAR---PTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDN 384 (2239)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (2239)
.-..+.+....-+.+|-.+.+ +|+++.+|++++++.+|++ .......+-++..+-+.+ ..+|.+++.|++.
T Consensus 320 LL~qt~~yl~sL~s~Vk~qk~~~~~~~~~~d~~~i~~~ak~~~~d~~~s~~~Yys~AH~I~E~----v~~Qps~l~GG~L 395 (1157)
T KOG0386|consen 320 LLSQTDSYLPSLSSVVKGQKSENPDANSASDISGISGSAKADVDDHAESNGSYYSTAHPIKEN----VAKQPSSLQGGEL 395 (1157)
T ss_pred hhhhhhHHHHHHHHHHHHhhccccccchhhhhhhhhhhhcchhhhhhhcchhHHHhcchhhhc----cccCcchhcCCCC
Confidence 999888888777777878887 9999999999999999999 666666666776666555 3479999999986
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCchhhHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 000101 385 QVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPV--KNSSGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGG 462 (2239)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (2239)
..-....+---++++.-|+.+-.+.-+ ++....-+ .-.---|..+|+-.++++-+.+.....++++.--+- +...-
T Consensus 396 k~YQl~GLqWmVSLyNNnLNGILADEM-GLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaP-Sv~~i 473 (1157)
T KOG0386|consen 396 KEYQLHGLQWMVSLYNNNLNGILADEM-GLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAP-SVQKI 473 (1157)
T ss_pred chhhhhhhHHHhhccCCCcccccchhc-ccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhcccccc-ceeee
Confidence 554444444445555556666554431 22211100 111234666777777788777777777776654441 01111
Q ss_pred CCCCCCcccCCcchhHHHHHHHHHHHhhccccCCCCChHHHHHhcCCCccccccccccccccccccccCCCCCCcchhhh
Q 000101 463 LATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAEDQ 542 (2239)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (2239)
.-.+.|+.|.||+++|+| .|.++|+|++.+.+. +.++|..|.+++...+ ++....++...-.+...+ --..+
T Consensus 474 ~YkGtp~~R~~l~~qir~-gKFnVLlTtyEyiik---dk~lLsKI~W~yMIID---EGHRmKNa~~KLt~~L~t-~y~~q 545 (1157)
T KOG0386|consen 474 QYKGTPQQRSGLTKQQRH-GKFNVLLTTYEYIIK---DKALLSKISWKYMIID---EGHRMKNAICKLTDTLNT-HYRAQ 545 (1157)
T ss_pred eeeCCHHHHhhHHHHHhc-ccceeeeeeHHHhcC---CHHHHhccCCcceeec---ccccccchhhHHHHHhhc-cccch
Confidence 222778999999999999 999999999999988 9999999999998888 777777777766666655 45566
Q ss_pred hcccccCCcccccccccCCCCCcccccccCCCCcccCC-CccCCcccc--CCCccccCCCCccccCCcc-cccChhhhhh
Q 000101 543 LRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSP-VGQGMSAVT--KEPAPVVVPGKEEQQAPVS-SVKSDQEVEC 618 (2239)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 618 (2239)
.|-+..++ .+|.--.-++..+...+....+...+-.. .-+.+.+.. .+-......-+.++...++ +++..+.+..
T Consensus 546 ~RLLLTGT-PLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKke 624 (1157)
T KOG0386|consen 546 RRLLLTGT-PLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKE 624 (1157)
T ss_pred hhhhhcCC-hhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHH
Confidence 77777776 66665555566666665555544333322 112222222 2222222233344555566 8888888888
Q ss_pred cccccccccCCCCCCCCccCCCCCCcccccccCCCCCCCCCCCCccccccccCCCCCCCCccccccCCCCccccccCCCC
Q 000101 619 GLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNN 698 (2239)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 698 (2239)
.-+..| |-..+.+|.+++. --|+.=+........+.|.+..+.|.++|++++.+.||...-+.. ..|-+.+
T Consensus 625 VE~~LP---dKve~viKC~mSa-----lQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~l-f~~ve~~ 695 (1157)
T KOG0386|consen 625 VEQELP---DKVEDVIKCDMSA-----LQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYL-FANVENS 695 (1157)
T ss_pred HhhhCc---hhhhHhhheehhh-----hhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchh-hhhhccc
Confidence 888877 5556667766532 223334445555666777778899999999999999999988444 2145677
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCChhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 000101 699 LTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMA 778 (2239)
Q Consensus 699 ~~~~~d~~~~~~~~~~~~~~~~R~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ie~k~l~ll~~q~~lr~~~~~~~~~~~~ 778 (2239)
...-+|+.+|+...++.-+-.+++--|+.....+......+++.+.+...+.++-+++..|+-|-+.++... +.+...
T Consensus 696 ~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~--ll~~FN 773 (1157)
T KOG0386|consen 696 YTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGD--LLEIFN 773 (1157)
T ss_pred cccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHH--HHHHhc
Confidence 778888899999999987777788888888888877777788889999999999999999999999999887 677788
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhhh
Q 000101 779 MPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILRE-FSKRK 857 (2239)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~~-~~kr~ 857 (2239)
+|++.|..|...|.+.++.+-.|+.......+.+....+..|+++..|.+|..++.+..+..+|.++|++++++ +.|+.
T Consensus 774 ~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~ 853 (1157)
T KOG0386|consen 774 APDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLD 853 (1157)
T ss_pred CCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcC
Confidence 99999999999998888888777655445555666677888999999999999999999999999999999988 77888
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccCCCcc----hHHHHHHHHHhHhhhHH---HHHHhhhhhHHhhhhHH-----H
Q 000101 858 DDDRNKRMEALKNNDVERYREMLLEQQTSIPGD----AAERYAVLSSFLTQTEE---YLYKLGSKITAAKNQQE-----V 925 (2239)
Q Consensus 858 e~~~~~r~~~lk~~d~e~y~~ll~~~k~~~~~d----~~~r~~~l~~lL~qte~---~l~~l~~~v~~~k~~q~-----~ 925 (2239)
.+.+-.++.++.+++.+.|++++.++....+++ +..+++.|..+|.++|+ |+++|+......++.+. +
T Consensus 854 ~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~~~k~rl~ 933 (1157)
T KOG0386|consen 854 VDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQEKKPRLV 933 (1157)
T ss_pred chHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhccccchhh
Confidence 888888999999999999999988766655554 55677789999999999 99999988876666555 4
Q ss_pred HHHHHHHHHHHHhcC---CCHHHHH----HHHHhhhhhHHHhhhhhccCCC
Q 000101 926 EEAANAAAAAARLQG---LSEEEVR----SAAACAGEEVMIRNRFLEMNAP 969 (2239)
Q Consensus 926 ~~~~~~~~~~~r~~g---l~~ee~~----~~~~~~~ee~~i~~~f~e~~~p 969 (2239)
++.........+..+ +++++.. ....|.-.++.+++.+.++..+
T Consensus 934 ee~e~p~~i~~~~~~~~~~~~~~~~~~~~~rg~r~Rkev~y~d~~te~q~~ 984 (1157)
T KOG0386|consen 934 EEAELPADIYKRDQGVERLSEEEEEEKILGRGRRARKEVVYSDRLTEMQWL 984 (1157)
T ss_pred hhhhcHHHHHhcchhhhhhhhhhhhhccccccccccceeecccccchhhhh
Confidence 444444334444444 3433333 2223444555555555544443
No 20
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.4e-44 Score=461.23 Aligned_cols=443 Identities=30% Similarity=0.441 Sum_probs=350.0
Q ss_pred HHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechHHHHHHHHHHHHHCC-
Q 000101 1003 DYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNAVLVNWKSELHKWLP- 1074 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lie~k~------~~GP~LIVVP~SLLsQW~~Ef~KwaP- 1074 (2239)
.+|..+..|+..... .-.|||+||+||+|||+++|++++....... ..+..|||||.+++.+|..|+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 444444444433322 3367899999999999999999876443222 45678999999999999999966664
Q ss_pred -CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEE
Q 000101 1075 -SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRL 1153 (2239)
Q Consensus 1075 -slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRL 1153 (2239)
.+.+.+|+| |.... .....++||||||..+.. ..+..+.|-.||+||||.++|..+..++++..+.+.+||
T Consensus 215 ~~l~v~v~~g----r~kd~--~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RW 286 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTKDK--SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRW 286 (674)
T ss_pred cceEEEEecc----ccccc--chhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeeccceee
Confidence 467778888 21111 233578899999999875 567779999999999999999999999999999999999
Q ss_pred EecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHh
Q 000101 1154 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1233 (2239)
Q Consensus 1154 LLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKk 1233 (2239)
.|||||++|++.|||+++.|+.-..+..+..|...+..|+..... .....++..+|..+++||+|.
T Consensus 287 cLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~--------------~~~~k~l~~~L~~v~lrrtK~ 352 (674)
T KOG1001|consen 287 CLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY--------------KEGVKTLQGILKKVMLRRTKE 352 (674)
T ss_pred eecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH--------------HHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999988888765410 235678899999999999886
Q ss_pred hh-----hcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1234 DV-----EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1234 DV-----ekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
.- .-.||++...++.|.++..++.+|..+............... .....+..+.-.+.+||++|+||+
T Consensus 353 ~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~-------~~~~~Y~~~l~~lLrlrq~c~h~~ 425 (674)
T KOG1001|consen 353 MEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEG-------TVSSTYAFFLKNLLRLRQACDHSL 425 (674)
T ss_pred ccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhc-------hhhhhHHHHHHHHHHHHHHccchH
Confidence 32 236999999999999999999999988765433222111111 112346677778889999999998
Q ss_pred CCCCCccccc----------------------------hhhHhh------------------------------------
Q 000101 1309 LNYPYFSDLS----------------------------KDFLVK------------------------------------ 1324 (2239)
Q Consensus 1309 L~~p~~~~~s----------------------------~d~Li~------------------------------------ 1324 (2239)
++........ ...++.
T Consensus 426 lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 426 LVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred hhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence 8432110000 000001
Q ss_pred --------------cccHHHHHHHHHHHHHhcCC-eEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHH
Q 000101 1325 --------------SCGKLWILDRILIKLQRTGH-RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1389 (2239)
Q Consensus 1325 --------------~SGKLelLdrIL~kLkatGh-KVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~F 1389 (2239)
.+.|+..+..+|........ ++|||||++.++++++-.|...++.+.+++|.++...|.+.+..|
T Consensus 506 s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~ 585 (674)
T KOG1001|consen 506 SANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDF 585 (674)
T ss_pred hcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhccc
Confidence 13455555555554433334 999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhcc
Q 000101 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRS 1469 (2239)
Q Consensus 1390 Ns~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls 1469 (2239)
+ .+....|+|+|.+|||.||||+.|++||++|++|||..+.||++||||+||+++|.|+++..
T Consensus 586 ~-~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i---------------- 648 (674)
T KOG1001|consen 586 P-CDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFII---------------- 648 (674)
T ss_pred c-cCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehh----------------
Confidence 9 58889999999999999999999999999999999999999999999999999999999854
Q ss_pred CCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHH
Q 000101 1470 GGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV 1508 (2239)
Q Consensus 1470 ~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkV 1508 (2239)
.++||++|++ +++.|..+.+..
T Consensus 649 ----------------~dtveer~l~-iq~~K~~~~~~a 670 (674)
T KOG1001|consen 649 ----------------KDTVEERILK-IQEKKREYNASA 670 (674)
T ss_pred ----------------hhccHHHHHH-HHHHHHHHHhhh
Confidence 3799999998 778887766543
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.1e-39 Score=379.43 Aligned_cols=280 Identities=37% Similarity=0.685 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHhh---------cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC--CCeEEEechHHHHHHHHHHHHH
Q 000101 1004 YQIVGLQWMLSLY---------NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY--GPHLIIVPNAVLVNWKSELHKW 1072 (2239)
Q Consensus 1004 YQleGLqwLlsL~---------~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~--GP~LIVVP~SLLsQW~~Ef~Kw 1072 (2239)
||+.||.||+..+ ....|||||||||+|||+++++++.++....... .++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7778899999999999999999999887643332 3699999999999999999999
Q ss_pred C-C-CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHH-----HhhhhcccCCceEEEecccccccChhhHHHHHhh
Q 000101 1073 L-P-SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIM-----YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1145 (2239)
Q Consensus 1073 a-P-slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~-----kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk 1145 (2239)
+ + .+.+++|.|....+... ......++|+|+||+.+. .....+..++|++|||||+|+++|..+.+++++.
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~ 158 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRLS--KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALR 158 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHTT--SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHH
T ss_pred ccccccccccccccccccccc--ccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccccc
Confidence 9 4 67888888876222111 123457899999999999 6677888889999999999999999999999999
Q ss_pred ccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1146 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1146 ~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
.+.+.++|+|||||+.|++.|||.+++||.|..+.+...|.++|..+ ..........+|..++.+
T Consensus 159 ~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~~L~~~l~~ 223 (299)
T PF00176_consen 159 KLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP---------------DKENSYENIERLRELLSE 223 (299)
T ss_dssp CCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH---------------HHTHHHHHHHHHHHHHCC
T ss_pred ccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh---------------ccccccccccccccccch
Confidence 99999999999999999999999999999999999999999988543 122333467789999999
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
|++||.++++...||+..+.++.|+|++.|+.+|+.+............ .........+...+++||++|+
T Consensus 224 ~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 224 FMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS---------RKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp CEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T-----------TCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc---------ccchhhHHHHHHHHHHHHHHhC
Confidence 9999999999889999999999999999999999988665443332211 1122456788899999999999
Q ss_pred CCCC
Q 000101 1306 HPLL 1309 (2239)
Q Consensus 1306 HP~L 1309 (2239)
||++
T Consensus 295 hp~l 298 (299)
T PF00176_consen 295 HPYL 298 (299)
T ss_dssp -THH
T ss_pred Cccc
Confidence 9976
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-35 Score=380.08 Aligned_cols=333 Identities=18% Similarity=0.282 Sum_probs=241.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
..+|||||.+++.++.. -....+|||+++||+|||++++++++.+ .+++|||||.. ++.||..+|.+|+.
T Consensus 253 ~~~LRpYQ~eAl~~~~~-~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHh-cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 35899999999998864 1112579999999999999999888654 25899999987 68999999999973
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh----------hhhcccCCceEEEecccccccChhhHHHHHh
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1144 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD----------~s~L~kikWd~VIIDEAHrIKN~~SKlskaL 1144 (2239)
...+..|.|....+ ......|+||||+++... ...|....|++||+||||++.+ ....+.+
T Consensus 326 ~~~I~~~tg~~k~~-------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~il 396 (732)
T TIGR00603 326 DSQICRFTSDAKER-------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRVL 396 (732)
T ss_pred CceEEEEecCcccc-------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHHHH
Confidence 45566676653321 123468999999998643 2345566899999999999964 3444567
Q ss_pred hccccceEEEecCCCCCCCHHHHHHHHhhh-cCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 000101 1145 DRYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1223 (2239)
Q Consensus 1145 k~Lka~rRLLLTGTPIQNnL~ELwsLLnFL-lP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklL 1223 (2239)
..+.+.+||+|||||++++ +.+..+++| .|.+|.- .|. .++
T Consensus 397 ~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~--~~~----------------------------------eLi 438 (732)
T TIGR00603 397 TIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWM----------------------------------ELQ 438 (732)
T ss_pred HhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--CHH----------------------------------HHH
Confidence 7788999999999999877 334444443 3433210 000 000
Q ss_pred hhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000101 1224 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1303 (2239)
Q Consensus 1224 rPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKi 1303 (2239)
. ...|.+-....++|+|++.....|... .. .. +.+ | +
T Consensus 439 ~-----------~G~LA~~~~~ev~v~~t~~~~~~yl~~--~~-------~~---------------k~~------l--~ 475 (732)
T TIGR00603 439 K-----------KGFIANVQCAEVWCPMTPEFYREYLRE--NS-------RK---------------RML------L--Y 475 (732)
T ss_pred h-----------CCccccceEEEEEecCCHHHHHHHHHh--cc-------hh---------------hhH------H--h
Confidence 0 123555666779999998764444211 00 00 000 0 0
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000101 1304 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1304 CnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRq 1383 (2239)
+ ....|+..+..++......++|+||||.++..++.+...| +. ..|+|.|+..+|.
T Consensus 476 ~-------------------~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~ 531 (732)
T TIGR00603 476 V-------------------MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERM 531 (732)
T ss_pred h-------------------hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHH
Confidence 0 1124888888888876678999999999999988888777 33 4489999999999
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCC-CcchHHHhhhhhcccCCcce-----EEEEEEeh
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKRE-----VKVIYMEA 1453 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW-NP~~dlQAiGRAhRIGQkKe-----V~VyrLva 1453 (2239)
+++++|+.+ +.+. +|+++++|++||||+.|++||++++++ |+..+.||+||+.|.+..+. +.+|.|++
T Consensus 532 ~il~~Fr~~-~~i~-vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs 605 (732)
T TIGR00603 532 QILQNFQHN-PKVN-TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVS 605 (732)
T ss_pred HHHHHHHhC-CCcc-EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEec
Confidence 999999852 2344 566679999999999999999999986 99999999999999987654 57777765
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1e-32 Score=363.86 Aligned_cols=427 Identities=19% Similarity=0.192 Sum_probs=266.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC--
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS-- 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPs-- 1075 (2239)
.++|+||.+.+..++. .++|++++||+|||++++.++..++. ...+++|||||+ .|+.||..+|.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4799999999887765 28999999999999999988887763 345789999998 5889999999998743
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChhhHHHHH--h-hccccc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARD--L-DRYRCQ 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~SKlska--L-k~Lka~ 1150 (2239)
..++.+.|......+. ......+|+|+|++.+..+. ..+....|++|||||||++.+..+..+.+ . ...+..
T Consensus 87 ~~v~~~~g~~~~~~r~---~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 87 EKIVVFTGEVSPEKRA---ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred ceEEEEeCCCCHHHHH---HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 4677777754432211 12346799999999998764 34445579999999999997644332211 1 122455
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
++++|||||..+ ...+..+++.|....+..+..|...+...+.... ..+.... .......++.+|..++.++
T Consensus 164 ~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~------v~~~~v~-l~~~~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 164 LVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVK------IEWVRVE-LPEELKEIRDLLNEALKDR 235 (773)
T ss_pred EEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccce------eEEEEeC-CcHHHHHHHHHHHHHHHHH
Confidence 699999999876 5666666666644333222222222211111000 0000000 0012345677777777776
Q ss_pred hHhhhhcC-CCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhh------hcC-hhhHHHHHHHHHHHHHHHHH
Q 000101 1231 RVEDVEGS-LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV------QKN-PIYQAKVYKTLNNRCMELRK 1302 (2239)
Q Consensus 1231 lKkDVekd-LP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l------~k~-~~~~~k~~ksL~niImqLRK 1302 (2239)
++...... ++.....+....+...+..++..+..... ......... ... ..........+...+..++.
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~ 312 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDS---EGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLRE 312 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCch---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 66543221 22222222233334444444443322100 000000000 000 00000001122222223332
Q ss_pred HcCCCCCCCC---Ccccc-------chhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHcCCeE
Q 000101 1303 TCNHPLLNYP---YFSDL-------SKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVY 1370 (2239)
Q Consensus 1303 iCnHP~L~~p---~~~~~-------s~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~rGiky 1370 (2239)
.+.++..... .+.+. ....+....+|+..|.++|.++. ..+.||||||++..+++.|.++|...|+.+
T Consensus 313 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~ 392 (773)
T PRK13766 313 EARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKA 392 (773)
T ss_pred hccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCce
Confidence 2211100000 00000 00111234689999999999876 578999999999999999999999999999
Q ss_pred EeecCC--------CCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCC
Q 000101 1371 RRIDGT--------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1442 (2239)
Q Consensus 1371 ~RLDGs--------ts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQ 1442 (2239)
..++|. ++..+|.+++++|+.++.. +|++|+++++|+|++.|++||+||++||+..++||.||++|.|+
T Consensus 393 ~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~ 469 (773)
T PRK13766 393 VRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE 469 (773)
T ss_pred EEEEccccccccCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC
Confidence 999987 8889999999999975433 68999999999999999999999999999999999999999876
Q ss_pred cceEEEEEEe
Q 000101 1443 KREVKVIYME 1452 (2239)
Q Consensus 1443 kKeV~VyrLv 1452 (2239)
+.||.++
T Consensus 470 ---~~v~~l~ 476 (773)
T PRK13766 470 ---GRVVVLI 476 (773)
T ss_pred ---CEEEEEE
Confidence 3455553
No 24
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.1e-28 Score=294.24 Aligned_cols=432 Identities=18% Similarity=0.216 Sum_probs=298.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCC----CeEEEechH-HHHHHHHH---H
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYG----PHLIIVPNA-VLVNWKSE---L 1069 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~-k~~~G----P~LIVVP~S-LLsQW~~E---f 1069 (2239)
..+.|-|..++..++. +....+-..||+|||+.++..+...+.. ..... -.|||+|+. |..|..+. |
T Consensus 27 ~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 3788999999988886 6777888899999999999998887732 22222 359999998 66665544 5
Q ss_pred HHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh----hcccCCceEEEecccccccC--hhhHHHHH
Q 000101 1070 HKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKD--RESVLARD 1143 (2239)
Q Consensus 1070 ~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s----~L~kikWd~VIIDEAHrIKN--~~SKlska 1143 (2239)
..+++++++.+++|+... ......+.....+|+|.|++++..-.. .+......++|+|||+++.. +...+..+
T Consensus 103 ~~~l~~l~~~l~vGG~~v-~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~I 181 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSV-EEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTI 181 (567)
T ss_pred HHhhhccceEEEecCccH-HHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHH
Confidence 555789999999999544 344556777889999999999875533 36555789999999999965 56677788
Q ss_pred hhccccceEEEe-cCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1144 LDRYRCQRRLLL-TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1144 Lk~Lka~rRLLL-TGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
|..++.++|.+| |||-.+. ..+
T Consensus 182 Ls~LPKQRRTGLFSATq~~~-v~d-------------------------------------------------------- 204 (567)
T KOG0345|consen 182 LSFLPKQRRTGLFSATQTQE-VED-------------------------------------------------------- 204 (567)
T ss_pred HHhcccccccccccchhhHH-HHH--------------------------------------------------------
Confidence 888999999887 8883100 000
Q ss_pred hhhHHhhHhHhhhhcCCCCceEEEEEec-c--CHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCR-M--SAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1299 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~e~VV~c~-M--S~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImq 1299 (2239)
|.-+.||..+. ..+... + ++....+
T Consensus 205 L~raGLRNpv~-----------V~V~~k~~~~tPS~L~~----------------------------------------- 232 (567)
T KOG0345|consen 205 LARAGLRNPVR-----------VSVKEKSKSATPSSLAL----------------------------------------- 232 (567)
T ss_pred HHHhhccCcee-----------eeecccccccCchhhcc-----------------------------------------
Confidence 00112221111 000000 0 0000000
Q ss_pred HHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH--cCCeEEeecCCC
Q 000101 1300 LRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW--RQLVYRRIDGTT 1377 (2239)
Q Consensus 1300 LRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~--rGiky~RLDGst 1377 (2239)
+ ...+...-|+.+|..+|.. ...+|+|||.......++....|.. ..+.++.|||.+
T Consensus 233 ----------~---------Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~ 291 (567)
T KOG0345|consen 233 ----------E---------YLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKM 291 (567)
T ss_pred ----------e---------eeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchh
Confidence 0 0012223478888888876 4578999997777777766666543 477899999999
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhh
Q 000101 1378 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 1457 (2239)
Q Consensus 1378 s~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEk 1457 (2239)
+...|.++++.|..... -+|+||+++++|||++++|.||.||||-+|..+.||.||+.|.|......||.+-..+++
T Consensus 292 ~q~~R~k~~~~F~~~~~---~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 292 SQKARAKVLEAFRKLSN---GVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred cchhHHHHHHHHHhccC---ceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 99999999999987333 389999999999999999999999999999999999999999999888777766555555
Q ss_pred hhhhhhhh-hhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHH---------hccccCccCCHHHHHHHH
Q 000101 1458 ISSHQKED-ELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVI---------NAGRFDQRTTHEERRMTL 1527 (2239)
Q Consensus 1458 I~s~q~eK-e~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVI---------qAGkFD~kst~eErr~~L 1527 (2239)
+..+.... ..+... +. ....+.+...|..++.++.+-+...+...|. ..-+|+.++++-...+++
T Consensus 369 veFl~i~~~v~le~~--~~---e~~~~~~~~~ir~~~~~DR~~~dkG~kAFVS~VraY~~H~cs~Ifr~kdLd~~~lA~~ 443 (567)
T KOG0345|consen 369 VEFLRIKGKVELERI--DT---EKASLSVYQDIRSIISKDRAVLDKGLKAFVSHVRAYKKHHCSYIFRLKDLDLGKLATL 443 (567)
T ss_pred HHHHHhcCccchhhh--cc---cccchhHHHHHHHHhcccHHHHhhhHHHHHHHHHHHhhcceeEEEeecCCcHHHHHHH
Confidence 55554332 111111 00 0111123455555555554445555555554 235899999999999999
Q ss_pred HHHHhhhhcccccccCCCCHHHHHHHHhcChHHHHHHh--hhhhh-cCcchhhhhhccchHHHh
Q 000101 1528 ETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFD--QMDEE-FGWIEEMTRYDQVPKWLR 1588 (2239)
Q Consensus 1528 e~LL~~ee~~~e~~~~vp~deELN~~laRseeE~~lf~--~mD~e-~~~~~~l~e~~elp~~~~ 1588 (2239)
++||+ +|.|.||.+...-. . +|. .+|.+ +.|.+...|+.+-..+..
T Consensus 444 YgLl~-----------lP~M~Elk~~~~~~---~-~~~~~~id~~~ikykdkkrEk~Rq~~l~~ 492 (567)
T KOG0345|consen 444 YGLLR-----------LPKMPELKQYKIGE---F-FFPKPAIDFSEIKYKDKKREKQRQQKLKV 492 (567)
T ss_pred HHHHh-----------CCCcHHHhhhhccc---e-eccCCCcchhhhcccchHHHHHHHHHHHH
Confidence 99999 89999998874322 2 344 35554 688888888777666643
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=3.5e-28 Score=307.12 Aligned_cols=336 Identities=16% Similarity=0.192 Sum_probs=228.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
.++||+||.+++.-++. +.+|||...||+|||++++.++.+++. ...+++|||||+. |+.||..+|.+|..
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~--~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLE--NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 35899999999977765 567899999999999988776665554 2334899999976 89999999999863
Q ss_pred CCce-EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-ccceE
Q 000101 1075 SVSC-IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRR 1152 (2239)
Q Consensus 1075 slkv-vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~rR 1152 (2239)
...+ .++.|... ....+|+|+|++.+.+....+ -.+|++|||||||++... .+...+..+ ++.++
T Consensus 186 ~~~~~~i~~g~~~----------~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~~ 252 (501)
T PHA02558 186 REAMHKIYSGTAK----------DTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGK--SLTSIITKLDNCKFK 252 (501)
T ss_pred ccceeEEecCccc----------CCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccch--hHHHHHHhhhccceE
Confidence 3333 34444322 135689999999998654322 137899999999999753 345556666 57789
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhH
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1232 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlK 1232 (2239)
++|||||..... ..+.++.++.|-.. .. . ...++
T Consensus 253 lGLTATp~~~~~-~~~~~~~~fG~i~~---------------~v------~---------------~~~li--------- 286 (501)
T PHA02558 253 FGLTGSLRDGKA-NILQYVGLFGDIFK---------------PV------T---------------TSQLM--------- 286 (501)
T ss_pred EEEeccCCCccc-cHHHHHHhhCCceE---------------Ee------c---------------HHHHH---------
Confidence 999999954322 12222222111100 00 0 00000
Q ss_pred hhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000101 1233 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1312 (2239)
Q Consensus 1233 kDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p 1312 (2239)
+ ...+.+.....+.+..+......+. ... +.. .+.
T Consensus 287 ~--~g~l~~~~~~~v~~~~~~~~~~~~~---------------------~~~-----~~~------~~~----------- 321 (501)
T PHA02558 287 E--EGQVTDLKINSIFLRYPDEDRVKLK---------------------GED-----YQE------EIK----------- 321 (501)
T ss_pred h--CCCcCCceEEEEeccCCHHHhhhhc---------------------ccc-----hHH------HHH-----------
Confidence 0 0112222223333333322110000 000 000 000
Q ss_pred CccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcC
Q 000101 1313 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1392 (2239)
Q Consensus 1313 ~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ 1392 (2239)
.+.....+..++..++..+...++++||||..+.+++.|.+.|...|+++..|||+++.++|..+++.|+.
T Consensus 322 --------~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~- 392 (501)
T PHA02558 322 --------YITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG- 392 (501)
T ss_pred --------HHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-
Confidence 11122335566666777777788999999999999999999999999999999999999999999999985
Q ss_pred CCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcc-eEEEEEEeh
Q 000101 1393 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1453 (2239)
Q Consensus 1393 ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkK-eV~VyrLva 1453 (2239)
+...|+|.|++.+++|+|++.+|+||+++|+.+...++|++||++|.+..| .|.||.++.
T Consensus 393 -~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 393 -GKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred -CCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 344555556699999999999999999999999999999999999998775 588998854
No 26
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=4.3e-28 Score=293.17 Aligned_cols=420 Identities=20% Similarity=0.214 Sum_probs=258.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa--Ps 1075 (2239)
.+-|.||+..+.-.+. .|+|++..||||||++|+.++++.+...+ |.+|+++|+. |+.|-..-|.+++ |.
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFG--GKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcC--CeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 3679999998887775 48999999999999999999987765443 3899999976 8888888888887 55
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChh--hHHHHHhhccccc-
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRCQ- 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~Lka~- 1150 (2239)
..++.+.|...-..+. ..+.+-+|+|.|++.+.+|. ..+...++.+||+|||||.-... .-+.+....+.+.
T Consensus 87 ~~i~~ltGev~p~~R~---~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 87 DEIAALTGEVRPEERE---ELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred hheeeecCCCChHHHH---HHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 7788888874332221 23456789999999999985 46677789999999999985432 2344444444444
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCCh----HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR----KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~----k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
+.|+||||| -++...+...++-|..+-.--. .+...+.. .... .. -.....++-..+...|..+|+|.
T Consensus 164 ~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~-~~kv----e~--ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 164 LILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVK-KIKV----EW--IKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred eEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhc-ccee----EE--EeccCcHHHHHHHHHHHHHHHHH
Confidence 689999999 4566777777766644322100 11111110 0000 00 00001122233555666666663
Q ss_pred HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHH-hhhhc----------ChhhHHHHHHHHHH
Q 000101 1227 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEK-RRVQK----------NPIYQAKVYKTLNN 1295 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek-~~l~k----------~~~~~~k~~ksL~n 1295 (2239)
+ ..+++- -.....++. .++.+.................. ..+.. ......-+...+.+
T Consensus 236 L-k~L~~~--------g~~~~~~~~--~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~ 304 (542)
T COG1111 236 L-KPLKEL--------GVIESSSPV--SKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQ 304 (542)
T ss_pred H-HHHHHc--------CceeccCcc--cHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 2 222221 011111111 12222221100000000000000 00000 00000111223333
Q ss_pred HHHHHHHHcCCCCC-------CCCCcccc-----chhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHH
Q 000101 1296 RCMELRKTCNHPLL-------NYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEE 1361 (2239)
Q Consensus 1296 iImqLRKiCnHP~L-------~~p~~~~~-----s~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed 1361 (2239)
-+..|..-|..-.. ..+++... .....--.-+|++.|.+||.+.. ..+.|||||++|+++++.|.+
T Consensus 305 Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~ 384 (542)
T COG1111 305 YLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVN 384 (542)
T ss_pred HHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHH
Confidence 33334333332000 00000000 00001112469999999999987 557899999999999999999
Q ss_pred HHHHcCCeEE-eecC--------CCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHH
Q 000101 1362 YLQWRQLVYR-RIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 1432 (2239)
Q Consensus 1362 ~L~~rGiky~-RLDG--------sts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQ 1432 (2239)
+|...|+... ++-| +|++++..++|+.|+.++-+ +|++|.+|.+|||++++|.|||||+.-++-..+|
T Consensus 385 ~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQ 461 (542)
T COG1111 385 FLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQ 461 (542)
T ss_pred HHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecCCcHHHHHHH
Confidence 9999988875 5555 69999999999999975544 7999999999999999999999999999999999
Q ss_pred hhhhhcccCCcceEEEEEEeh
Q 000101 1433 AVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1433 AiGRAhRIGQkKeV~VyrLva 1453 (2239)
|.||++|- +.-+||.|++
T Consensus 462 R~GRTGR~---r~Grv~vLvt 479 (542)
T COG1111 462 RKGRTGRK---RKGRVVVLVT 479 (542)
T ss_pred hhCccccC---CCCeEEEEEe
Confidence 99999994 3444444543
No 27
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=1.5e-27 Score=297.14 Aligned_cols=347 Identities=22% Similarity=0.287 Sum_probs=252.5
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
..+||+||.+++.-++..+.....||+...||.|||+.++.++..+.. .+|||||.. |+.||...+.+++...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 458999999999888876665788999999999999999999877653 499999977 8999998888887654
Q ss_pred -ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccChhhHHHHHhhccccce-E
Q 000101 1077 -SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR-R 1152 (2239)
Q Consensus 1077 -kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~r-R 1152 (2239)
.+-.|.|.... .. ...|+|+||+++.+. ...+...+|++||+|||||+....... .+..+...+ +
T Consensus 108 ~~~g~~~~~~~~-------~~--~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~--~~~~~~~~~~~ 176 (442)
T COG1061 108 DEIGIYGGGEKE-------LE--PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR--ILELLSAAYPR 176 (442)
T ss_pred cccceecCceec-------cC--CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH--HHHhhhcccce
Confidence 34445554321 11 146999999999886 344555589999999999997544443 334445555 9
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh-
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR- 1231 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl- 1231 (2239)
|+|||||...+...+..++.++.|-++. ..
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g~~vy~-------------------------------------------------~~~ 207 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIGPIVYE-------------------------------------------------VSL 207 (442)
T ss_pred eeeccCceeecCCchhHHHHhcCCeEee-------------------------------------------------cCH
Confidence 9999999766544444444443322221 11
Q ss_pred Hhhhh-cCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1232 VEDVE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1232 KkDVe-kdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
+..+. +.|.+.....+++.++......|..........+.. ..........+
T Consensus 208 ~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~--------- 260 (442)
T COG1061 208 KELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA------------------RGTLRAENEAR--------- 260 (442)
T ss_pred HHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh------------------hhhhhHHHHHH---------
Confidence 11111 357788888899989988888886443221100000 00000000111
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
........|+..+..++.... .+.++||||..+.+.+.|...|...|+ +..++|.++..+|..+++.|+
T Consensus 261 ---------~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 261 ---------RIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred ---------HHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 112233457888888888766 789999999999999999999998888 889999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcc-cCCcceEEEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR-IGQKREVKVIYM 1451 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhR-IGQkKeV~VyrL 1451 (2239)
.++ ..+|++++++++|+|+++|+++|+..+.-++..+.|++||+.| ...++.+.++.+
T Consensus 330 ~g~---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~ 388 (442)
T COG1061 330 TGG---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDY 388 (442)
T ss_pred cCC---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEE
Confidence 755 3479999999999999999999999999999999999999999 555666555554
No 28
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3.6e-27 Score=291.53 Aligned_cols=316 Identities=22% Similarity=0.305 Sum_probs=233.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH------hCCCCCeEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF------KGNYGPHLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~------k~~~GP~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
.+.|.|..+...++. +..+|...+||+|||+.++..+...+.. ++....+||++|+. |..|...++.++
T Consensus 113 ~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 577888888777776 7888999999999999998876655543 22333489999998 788899999999
Q ss_pred CCCCc--eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHHhhc
Q 000101 1073 LPSVS--CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDR 1146 (2239)
Q Consensus 1073 aPslk--vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~ 1146 (2239)
...+. .++.+|+.....++... ....+|+|+|+++++... ..+.-.+..|+|+|||++|.. ....+.++|..
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l--~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~ 266 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDL--ERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQ 266 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHH--hcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHh
Confidence 87654 55656655555444332 347899999999998764 355566889999999999954 67788999998
Q ss_pred c-ccce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000101 1147 Y-RCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1224 (2239)
Q Consensus 1147 L-ka~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLr 1224 (2239)
+ ++.+ .|+.||| |. .
T Consensus 267 i~~~~rQtlm~saT---------wp--------------~---------------------------------------- 283 (519)
T KOG0331|consen 267 IPRPDRQTLMFSAT---------WP--------------K---------------------------------------- 283 (519)
T ss_pred cCCCcccEEEEeee---------cc--------------H----------------------------------------
Confidence 8 5554 5667888 10 0
Q ss_pred hHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000101 1225 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1304 (2239)
Q Consensus 1225 PFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiC 1304 (2239)
-+|.+..++.. .|-.+. +.... ....+..+.++-..|
T Consensus 284 --~v~~lA~~fl~-~~~~i~-ig~~~---------------------------------------~~~a~~~i~qive~~ 320 (519)
T KOG0331|consen 284 --EVRQLAEDFLN-NPIQIN-VGNKK---------------------------------------ELKANHNIRQIVEVC 320 (519)
T ss_pred --HHHHHHHHHhc-CceEEE-ecchh---------------------------------------hhhhhcchhhhhhhc
Confidence 01111112111 111111 11000 000111223333333
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH-hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000101 1305 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1305 nHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLk-atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRq 1383 (2239)
+ ...|...|..+|.++. ..+.||||||.+...++.|+..|+..++++..|||..++.+|.
T Consensus 321 ~-------------------~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~ 381 (519)
T KOG0331|consen 321 D-------------------ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERD 381 (519)
T ss_pred C-------------------HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHH
Confidence 2 1348888888888876 4456999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
.+|+.|++++.. ||++|+++++|||++++|+||+||+|-|...|+||+||++|.|++-....|
T Consensus 382 ~~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tf 444 (519)
T KOG0331|consen 382 WVLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITF 444 (519)
T ss_pred HHHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEE
Confidence 999999976655 899999999999999999999999999999999999999999988655443
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=1.6e-26 Score=288.86 Aligned_cols=311 Identities=18% Similarity=0.250 Sum_probs=220.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---Ps 1075 (2239)
++.|+|.+++..++. +.+.|+..+||+|||++++..+...+........+|||||+. |+.||..++.+++ +.
T Consensus 26 ~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 688999999998875 778999999999999988777766654333334689999987 8889999988875 46
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhccccc-
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRCQ- 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lka~- 1150 (2239)
+.+..++|+.....+.. ......+|+|+|++.+..... .+.-.++++|||||||++.+. ...+...+..++..
T Consensus 102 ~~v~~~~Gg~~~~~~~~--~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~ 179 (460)
T PRK11776 102 IKVLTLCGGVPMGPQID--SLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARR 179 (460)
T ss_pred cEEEEEECCCChHHHHH--HhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCccc
Confidence 77877887765443332 222578999999999986532 333447899999999998653 33455555555544
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
..+++|||+-. ++-.+...+ +..|.... -
T Consensus 180 q~ll~SAT~~~----~~~~l~~~~--------------~~~~~~i~---------------------------------~ 208 (460)
T PRK11776 180 QTLLFSATYPE----GIAAISQRF--------------QRDPVEVK---------------------------------V 208 (460)
T ss_pred EEEEEEecCcH----HHHHHHHHh--------------cCCCEEEE---------------------------------E
Confidence 46888999621 111111100 00000000 0
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
......+......+.+
T Consensus 209 ---~~~~~~~~i~~~~~~~------------------------------------------------------------- 224 (460)
T PRK11776 209 ---ESTHDLPAIEQRFYEV------------------------------------------------------------- 224 (460)
T ss_pred ---CcCCCCCCeeEEEEEe-------------------------------------------------------------
Confidence 0000000000011100
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
....|+..|..+|... ...++||||+....++.+.+.|...++.+..+||+++..+|..+++.|+
T Consensus 225 -------------~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~ 289 (460)
T PRK11776 225 -------------SPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFA 289 (460)
T ss_pred -------------CcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 0011455555555432 3568999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
++... +||+|+++++|||++++++||+||.|.++..|.||+||++|.|....+.++
T Consensus 290 ~g~~~---vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l 345 (460)
T PRK11776 290 NRSCS---VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSL 345 (460)
T ss_pred cCCCc---EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEE
Confidence 75544 799999999999999999999999999999999999999999987655444
No 30
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=1.7e-26 Score=294.33 Aligned_cols=316 Identities=20% Similarity=0.251 Sum_probs=218.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-----~~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
++.|+|..++..++. +.+.|+..+||+|||++++..+...+... +....+|||||+. |+.||..++.+|.
T Consensus 152 ~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 689999999988776 77889999999999999876554333221 1122479999987 8889999999987
Q ss_pred CC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhhcc
Q 000101 1074 PS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY 1147 (2239)
Q Consensus 1074 Ps--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~L 1147 (2239)
.. +.+.+..|......+... .....+|||+|++.|..... .+...++.+|||||||++.+.. ..+.+.+..+
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~~--l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~ 305 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIYA--LRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI 305 (545)
T ss_pred cccCccEEEEeCCCCHHHHHHH--HHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhC
Confidence 54 555555555444333222 23468999999999876532 2333468899999999997543 3445555556
Q ss_pred ccc-eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1148 RCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1148 ka~-rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
... ..+++|||.- .++-.+...+... .++....
T Consensus 306 ~~~~q~l~~SAT~p----~~v~~l~~~l~~~-------------~~v~i~v----------------------------- 339 (545)
T PTZ00110 306 RPDRQTLMWSATWP----KEVQSLARDLCKE-------------EPVHVNV----------------------------- 339 (545)
T ss_pred CCCCeEEEEEeCCC----HHHHHHHHHHhcc-------------CCEEEEE-----------------------------
Confidence 443 4678899941 1111111000000 0000000
Q ss_pred HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000101 1227 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1306 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnH 1306 (2239)
..+...........+.
T Consensus 340 ------g~~~l~~~~~i~q~~~---------------------------------------------------------- 355 (545)
T PTZ00110 340 ------GSLDLTACHNIKQEVF---------------------------------------------------------- 355 (545)
T ss_pred ------CCCccccCCCeeEEEE----------------------------------------------------------
Confidence 0000000000000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000101 1307 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1307 P~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL 1386 (2239)
.+....|...|..+|..+...+.++||||+....++.|...|...|+.+..+||+++.++|..++
T Consensus 356 ---------------~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il 420 (545)
T PTZ00110 356 ---------------VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVL 420 (545)
T ss_pred ---------------EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHH
Confidence 01112355666677776666788999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
+.|+++... |||+|+++++|||++++++||+||+|+++..|+||+||++|.|.+..+..|
T Consensus 421 ~~F~~G~~~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~ 480 (545)
T PTZ00110 421 NEFKTGKSP---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTF 480 (545)
T ss_pred HHHhcCCCc---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 999975444 799999999999999999999999999999999999999999987665444
No 31
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.95 E-value=4.3e-28 Score=312.12 Aligned_cols=274 Identities=27% Similarity=0.415 Sum_probs=200.7
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHHHHHHHH---------------HhCCCCCeEEEechHHHHHHHHHHHHHCCCC-ceE
Q 000101 1016 YNNKLNGILADEMGLGKTVQVMALIAYLME---------------FKGNYGPHLIIVPNAVLVNWKSELHKWLPSV-SCI 1079 (2239)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIALIa~Lie---------------~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPsl-kvv 1079 (2239)
+..+..+++|||||+|||+..+++...-.. .....|.+|||||.+++.||..||.++++.. ++.
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~ 450 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVL 450 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEE
Confidence 334556799999999999998887643210 0113478999999999999999999999876 999
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----------------------hhcccCCceEEEecccccccChh
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----------------------SKLSKVDWKYIIIDEAQRMKDRE 1137 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----------------------s~L~kikWd~VIIDEAHrIKN~~ 1137 (2239)
.|.|-...-. ........+|||||||+.|..+. +.|..+.|..||||||+-+....
T Consensus 451 ~Y~Girk~~~--~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFW--LSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSS 528 (1394)
T ss_pred EEechhhhcc--cCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchH
Confidence 9988543211 11134468999999999997651 23556689999999999999999
Q ss_pred hHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000101 1138 SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1217 (2239)
Q Consensus 1138 SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~ 1217 (2239)
+..++.+..+++.++|+.||||+++ +.+|+.||+||.-..|+....|.+.+..++... ....
T Consensus 529 S~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r-----------------a~~~ 590 (1394)
T KOG0298|consen 529 SAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR-----------------AKCE 590 (1394)
T ss_pred HHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH-----------------hhhh
Confidence 9999999999999999999999999 999999999999989999999988765544321 1233
Q ss_pred HHHHhhhhHHhhHhHhhhhc--CCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHh------hhhcChhhHHHH
Q 000101 1218 RLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKR------RVQKNPIYQAKV 1289 (2239)
Q Consensus 1218 RLhklLrPFmLRRlKkDVek--dLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~------~l~k~~~~~~k~ 1289 (2239)
.++.++...+.|+.+-+|+. .+|+..+.+....+++.+..+|+.....-........++. ..........-.
T Consensus 591 ~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~ 670 (1394)
T KOG0298|consen 591 PLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQL 670 (1394)
T ss_pred hHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhh
Confidence 57778888899999988876 5788888888888888887777543111000000000000 001111222234
Q ss_pred HHHHHHHHHHHHHHcCCCCC
Q 000101 1290 YKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1290 ~ksL~niImqLRKiCnHP~L 1309 (2239)
...+.+.+.+||++|+||.+
T Consensus 671 ~a~i~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 671 LAIILKWLLRLRQACCHPLV 690 (1394)
T ss_pred HHHHHHHHHHHHHhhccccc
Confidence 56778889999999999965
No 32
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=271.77 Aligned_cols=314 Identities=22% Similarity=0.236 Sum_probs=231.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
.+-+.|.+++..++. +..+|.+.|||+|||+.++..|...+-..+..-.+||++|+. |..|....|+.+.. ++
T Consensus 83 ~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 466789999988886 888999999999999999888776554455555679999998 66677777888854 57
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccC--hhhHHHHHhhccccce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~r 1151 (2239)
.+.+..|+.+...+..... .+++|+|+|++.|+++... |.-....++|+|||+++.| +.-.+.++|+.++..+
T Consensus 159 r~~~lvGG~~m~~q~~~L~--kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~er 236 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQLS--KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRER 236 (476)
T ss_pred EEEEEecCchHHHHHHHhh--cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccc
Confidence 7888899888776655444 4889999999999987652 3344678999999999987 4567888888888776
Q ss_pred E-EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1152 R-LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1152 R-LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
+ +|.|||-- .+. .+| .+. .++
T Consensus 237 qt~LfsATMt-~kv----------------------------------------------------~kL---~ra-sl~- 258 (476)
T KOG0330|consen 237 QTFLFSATMT-KKV----------------------------------------------------RKL---QRA-SLD- 258 (476)
T ss_pred eEEEEEeecc-hhh----------------------------------------------------HHH---Hhh-ccC-
Confidence 5 55598821 110 111 100 000
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
-|.+ |.-+ ..|..+ ..|.+ -|++
T Consensus 259 --------~p~~------v~~s----~ky~tv-----------------------------------~~lkQ----~ylf 281 (476)
T KOG0330|consen 259 --------NPVK------VAVS----SKYQTV-----------------------------------DHLKQ----TYLF 281 (476)
T ss_pred --------CCeE------Eecc----chhcch-----------------------------------HHhhh----heEe
Confidence 1111 1100 011111 00110 0111
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
.+ ..-|-..|..||.++. |..+||||+...+.+.+.-+|+..|+....|||.|++..|..+++.|+
T Consensus 282 v~------------~k~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk 347 (476)
T KOG0330|consen 282 VP------------GKDKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFK 347 (476)
T ss_pred cc------------ccccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHh
Confidence 11 1125566777887654 689999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
++.-+ +|++|++|++|||++.+|+||+||.|-+...|+||+||+.|.|.. -.++.|++
T Consensus 348 ~~~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrs--G~~ItlVt 405 (476)
T KOG0330|consen 348 AGARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRS--GKAITLVT 405 (476)
T ss_pred ccCCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCC--cceEEEEe
Confidence 75444 899999999999999999999999999999999999999999944 34455544
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.2e-25 Score=282.18 Aligned_cols=307 Identities=19% Similarity=0.202 Sum_probs=218.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
.++|+|.+++.-++. +.+.|+..+||+|||+.++..+.. ..+.+|||+|+. |+.+|...+..+ ++.+
T Consensus 11 ~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~--gi~~ 78 (470)
T TIGR00614 11 SFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKAS--GIPA 78 (470)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 799999999998876 668999999999999887655432 245789999986 778888888765 4555
Q ss_pred EEEecchh--hHHHHHHHHhhcCccEEEEehhHHHHhh---hhc-ccCCceEEEecccccccChhh-------HHHHHhh
Q 000101 1079 IYYVGAKD--QRSRLFSQVAALKFNVLVTTYEFIMYDR---SKL-SKVDWKYIIIDEAQRMKDRES-------VLARDLD 1145 (2239)
Q Consensus 1079 vvy~Gskd--~Rk~l~~~i~~~kfdVVITTYE~L~kD~---s~L-~kikWd~VIIDEAHrIKN~~S-------KlskaLk 1145 (2239)
..+.+... .+..+...+..+.++|+++|++.+.... ..+ ...++.+|||||||++..... .+.....
T Consensus 79 ~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 158 (470)
T TIGR00614 79 TFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQ 158 (470)
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHH
Confidence 55555433 3344455566678999999999986532 333 455789999999999865332 1222223
Q ss_pred ccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1146 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1146 ~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
.++....++||||+-.....++...+++-.|.++.. .|.
T Consensus 159 ~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s~~----------------------------------- 197 (470)
T TIGR00614 159 KFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT------SFD----------------------------------- 197 (470)
T ss_pred HcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------CCC-----------------------------------
Confidence 455566899999986655555555544433322210 000
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
-|.....+.. ..
T Consensus 198 -------------r~nl~~~v~~-~~------------------------------------------------------ 209 (470)
T TIGR00614 198 -------------RPNLYYEVRR-KT------------------------------------------------------ 209 (470)
T ss_pred -------------CCCcEEEEEe-CC------------------------------------------------------
Confidence 0000000000 00
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1385 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqei 1385 (2239)
...+..|..++.+ ...+.++||||.....++.+...|...|+.+..+||+++.++|..+
T Consensus 210 --------------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i 268 (470)
T TIGR00614 210 --------------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDV 268 (470)
T ss_pred --------------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHH
Confidence 0011111112211 1246678999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1386 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1386 L~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
++.|..+... +|++|.++|+|||++++++||+||+|.++..|.|++||++|.|....+.+|+-
T Consensus 269 ~~~F~~g~~~---vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~ 331 (470)
T TIGR00614 269 HHKFQRDEIQ---VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYA 331 (470)
T ss_pred HHHHHcCCCc---EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEec
Confidence 9999975444 78999999999999999999999999999999999999999998877766653
No 34
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1.4e-25 Score=287.28 Aligned_cols=312 Identities=18% Similarity=0.222 Sum_probs=215.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-------~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
.+.|.|..++..++. +.+.|+..+||+|||+.++..+...+.... ....+|||||+. |+.|+..++.+
T Consensus 31 ~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 689999999998886 788999999999999998887665442211 134689999987 88899999999
Q ss_pred HCCC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh---hcccCCceEEEecccccccCh--hhHHHHHh
Q 000101 1072 WLPS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDL 1144 (2239)
Q Consensus 1072 waPs--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrIKN~--~SKlskaL 1144 (2239)
|... +.+.+++|......+. ......++|||+|++.|..... .+....+.+|||||||++... ...+...+
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~--~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il 184 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQR--ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLL 184 (572)
T ss_pred HhccCCceEEEEECCCCHHHHH--HHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHH
Confidence 8754 5566666765433221 1223468999999999976532 233446789999999998643 22333444
Q ss_pred hccc---cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000101 1145 DRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221 (2239)
Q Consensus 1145 k~Lk---a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhk 1221 (2239)
..+. ....+++|||.- +.+.++ .. .++..|....
T Consensus 185 ~~lp~~~~~q~ll~SATl~-~~v~~l---~~--------------~~l~~p~~i~------------------------- 221 (572)
T PRK04537 185 RRMPERGTRQTLLFSATLS-HRVLEL---AY--------------EHMNEPEKLV------------------------- 221 (572)
T ss_pred HhcccccCceEEEEeCCcc-HHHHHH---HH--------------HHhcCCcEEE-------------------------
Confidence 4443 345788899941 111111 00 0010000000
Q ss_pred hhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1222 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1222 lLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
+ +............+++.
T Consensus 222 ------v-----~~~~~~~~~i~q~~~~~--------------------------------------------------- 239 (572)
T PRK04537 222 ------V-----ETETITAARVRQRIYFP--------------------------------------------------- 239 (572)
T ss_pred ------e-----ccccccccceeEEEEec---------------------------------------------------
Confidence 0 00000000000000000
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHH
Q 000101 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1381 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~ee 1381 (2239)
....|+.+|..+|.. ..+.++||||+....++.|.++|...++.+..|||.++..+
T Consensus 240 ----------------------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~e 295 (572)
T PRK04537 240 ----------------------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKK 295 (572)
T ss_pred ----------------------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 001144444444432 34679999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1382 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1382 RqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
|.++++.|+++... |||+|+++++|||++++++||+||.||++..|+|++||++|.|....+.+|
T Consensus 296 R~~il~~Fr~G~~~---VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~ 360 (572)
T PRK04537 296 RESLLNRFQKGQLE---ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 360 (572)
T ss_pred HHHHHHHHHcCCCe---EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEE
Confidence 99999999975544 799999999999999999999999999999999999999999987665444
No 35
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=2.3e-25 Score=276.41 Aligned_cols=312 Identities=17% Similarity=0.189 Sum_probs=215.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh----CCCCCeEEEechH-HHHHHHHHHHHHCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK----GNYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k----~~~GP~LIVVP~S-LLsQW~~Ef~KwaP 1074 (2239)
+++++|.+++..++. +.+.|+...||+|||++++..++..+... .....+|||+|+. |+.||.+.+..|+.
T Consensus 23 ~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 23 RPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 688999999988875 67889999999999999877665544221 2234689999987 78888888888764
Q ss_pred --CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChh--hHHHHHhhccc
Q 000101 1075 --SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR 1148 (2239)
Q Consensus 1075 --slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~Lk 1148 (2239)
++.+..+.|+....... ......++|+|+|++.|.... ..+....+++|||||||++.... ..+...+..+.
T Consensus 99 ~~~~~v~~~~gg~~~~~~~--~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~ 176 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHA--EVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETR 176 (434)
T ss_pred cCCcEEEEEECCCCHHHHH--HHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCc
Confidence 46677777765443321 233457899999999987653 23344567899999999996532 33333333333
Q ss_pred c-ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhc-CCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1149 C-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS-QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1149 a-~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~-kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
. ...+++|||+-...+.+ |..++. .|...... +
T Consensus 177 ~~~q~~~~SAT~~~~~~~~------------------~~~~~~~~~~~i~~~--------------------------~- 211 (434)
T PRK11192 177 WRKQTLLFSATLEGDAVQD------------------FAERLLNDPVEVEAE--------------------------P- 211 (434)
T ss_pred cccEEEEEEeecCHHHHHH------------------HHHHHccCCEEEEec--------------------------C-
Confidence 2 34688999963211111 111110 00000000 0
Q ss_pred HhhHhHhhhhcCCCCceEEEE-EeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1227 MLRRRVEDVEGSLPPKVSIVL-RCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~e~VV-~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
...........+ .+.
T Consensus 212 ---------~~~~~~~i~~~~~~~~------------------------------------------------------- 227 (434)
T PRK11192 212 ---------SRRERKKIHQWYYRAD------------------------------------------------------- 227 (434)
T ss_pred ---------CcccccCceEEEEEeC-------------------------------------------------------
Confidence 000000000000 000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1385 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqei 1385 (2239)
....|+.+|..++.. ....++||||+....++.|...|...|+.+..+||+++..+|..+
T Consensus 228 ------------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~ 287 (434)
T PRK11192 228 ------------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEA 287 (434)
T ss_pred ------------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHH
Confidence 001245555555542 245799999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1386 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1386 L~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
++.|+++... +|++|+++++|||++++++||+||+|+++..|+||+||++|.|.+..+.++
T Consensus 288 l~~f~~G~~~---vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 288 IKRLTDGRVN---VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred HHHHhCCCCc---EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 9999975444 799999999999999999999999999999999999999999987665554
No 36
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=4.7e-25 Score=284.51 Aligned_cols=313 Identities=15% Similarity=0.152 Sum_probs=219.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---Ps 1075 (2239)
++.|+|.+++..++. +.+.|+...||+|||++++..+...+........+|||||+. |+.||..+|.+|. ++
T Consensus 28 ~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~ 103 (629)
T PRK11634 28 KPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 (629)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 799999999998875 677899999999999998776665554333445689999987 7889998888774 56
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhhccccc-
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRCQ- 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~Lka~- 1150 (2239)
+.++.++|......++.. .....+|||+|++.+..... .+.-.++.+|||||||.|.+.. ..+...+..++..
T Consensus 104 i~v~~~~gG~~~~~q~~~--l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~ 181 (629)
T PRK11634 104 VNVVALYGGQRYDVQLRA--LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 (629)
T ss_pred ceEEEEECCcCHHHHHHH--hcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCC
Confidence 777777776544333221 23468999999999986532 3444567899999999986533 3455566666544
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
..+++|||.- ..+.++ .. .++..|....
T Consensus 182 q~llfSAT~p-~~i~~i---~~--------------~~l~~~~~i~---------------------------------- 209 (629)
T PRK11634 182 QTALFSATMP-EAIRRI---TR--------------RFMKEPQEVR---------------------------------- 209 (629)
T ss_pred eEEEEEccCC-hhHHHH---HH--------------HHcCCCeEEE----------------------------------
Confidence 4678899941 111110 00 0000000000
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
+... ....|......+
T Consensus 210 i~~~-~~~~~~i~q~~~--------------------------------------------------------------- 225 (629)
T PRK11634 210 IQSS-VTTRPDISQSYW--------------------------------------------------------------- 225 (629)
T ss_pred ccCc-cccCCceEEEEE---------------------------------------------------------------
Confidence 0000 000000000000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
.+...-|+..|.++|.. ....++||||.....++.|..+|...|+.+..+||.++..+|..++++|+
T Consensus 226 -----------~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr 292 (629)
T PRK11634 226 -----------TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 (629)
T ss_pred -----------EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHh
Confidence 00011255555555543 23468999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.+... |||+|+++++|||++.+++||+||+|.++..|+|++||++|.|....+.++.
T Consensus 293 ~G~~~---ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v 349 (629)
T PRK11634 293 DGRLD---ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV 349 (629)
T ss_pred CCCCC---EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEe
Confidence 75544 7999999999999999999999999999999999999999999876555554
No 37
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=1.6e-25 Score=279.96 Aligned_cols=312 Identities=20% Similarity=0.251 Sum_probs=214.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~------~~GP~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
.+.|+|.+++..++. +.+.|+...||+|||++++..+...+.... ....+|||||+. |+.||..++..|
T Consensus 23 ~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 688999999988775 778999999999999998887766653321 112589999987 888999999988
Q ss_pred CCC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChh--hHHHHHhhc
Q 000101 1073 LPS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDR 1146 (2239)
Q Consensus 1073 aPs--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~ 1146 (2239)
+.. +.++.+.|......+.. .....++|+|+|++.|.... ..+...++++|||||||++.... ..+...+..
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~ 176 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMM--KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAK 176 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHH--HHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHh
Confidence 653 55566666654433322 22357899999999997643 23334578899999999986533 334445555
Q ss_pred cccc-eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1147 YRCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1147 Lka~-rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
+... ..+++|||.- +.+.++ ...+ +..|....
T Consensus 177 l~~~~q~l~~SAT~~-~~~~~l---~~~~--------------~~~~~~i~----------------------------- 209 (456)
T PRK10590 177 LPAKRQNLLFSATFS-DDIKAL---AEKL--------------LHNPLEIE----------------------------- 209 (456)
T ss_pred CCccCeEEEEeCCCc-HHHHHH---HHHH--------------cCCCeEEE-----------------------------
Confidence 5444 4788999952 111111 1000 00010000
Q ss_pred HHhhHhHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000101 1226 FMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1304 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e-~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiC 1304 (2239)
+.+ . ........ .+..+.
T Consensus 210 -~~~---~---~~~~~~i~~~~~~~~------------------------------------------------------ 228 (456)
T PRK10590 210 -VAR---R---NTASEQVTQHVHFVD------------------------------------------------------ 228 (456)
T ss_pred -Eec---c---cccccceeEEEEEcC------------------------------------------------------
Confidence 000 0 00000000 010000
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000101 1305 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1305 nHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqe 1384 (2239)
...|..+|..++.. ...+++||||+....++.|.+.|...++.+..+||.++.++|..
T Consensus 229 --------------------~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~ 286 (456)
T PRK10590 229 --------------------KKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTR 286 (456)
T ss_pred --------------------HHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Confidence 00122333333322 23468999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1385 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1385 iL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+++.|+++... |||+|+++++|||++++++||+||+|+++..|+|++||++|.|.+..+.++.
T Consensus 287 ~l~~F~~g~~~---iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 287 ALADFKSGDIR---VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred HHHHHHcCCCc---EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEe
Confidence 99999975444 7999999999999999999999999999999999999999999877655543
No 38
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1.4e-25 Score=277.82 Aligned_cols=311 Identities=16% Similarity=0.194 Sum_probs=213.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-------~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
.+.|.|.+++..++. +.+.|+..+||+|||++++..+...+.... ....+|||||+. |+.||..++..
T Consensus 30 ~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 678999999988775 778899999999999998776655442211 124589999987 78899998888
Q ss_pred HCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChh--hHHHHHhh
Q 000101 1072 WLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLD 1145 (2239)
Q Consensus 1072 waP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~--SKlskaLk 1145 (2239)
+.. ++.+.+++|+........ .....++|+|+|++.+.... ..+...++.+|||||||++.+.. ..+...+.
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~--~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~ 183 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLK--VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFR 183 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHH--HhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHH
Confidence 764 466777777644332221 22346899999999997653 23444578999999999986533 23333444
Q ss_pred cccc---ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1146 RYRC---QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1146 ~Lka---~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
.+.. ...+++|||.-. .+.++. ..++..|....
T Consensus 184 ~~~~~~~~~~~l~SAT~~~-~~~~~~-----------------~~~~~~p~~i~-------------------------- 219 (423)
T PRK04837 184 RMPPANQRLNMLFSATLSY-RVRELA-----------------FEHMNNPEYVE-------------------------- 219 (423)
T ss_pred hCCCccceeEEEEeccCCH-HHHHHH-----------------HHHCCCCEEEE--------------------------
Confidence 4432 235788999521 111110 00000000000
Q ss_pred hhhHHhhHhHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~-e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
+ ... ....... ...+++
T Consensus 220 -----v---~~~--~~~~~~i~~~~~~~---------------------------------------------------- 237 (423)
T PRK04837 220 -----V---EPE--QKTGHRIKEELFYP---------------------------------------------------- 237 (423)
T ss_pred -----E---cCC--CcCCCceeEEEEeC----------------------------------------------------
Confidence 0 000 0000000 000000
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHH
Q 000101 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1381 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~ee 1381 (2239)
....|+.+|..++.. ....++||||+....++.|..+|...|+.+..+||+++.++
T Consensus 238 ----------------------~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~ 293 (423)
T PRK04837 238 ----------------------SNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKK 293 (423)
T ss_pred ----------------------CHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhH
Confidence 011245555555543 23579999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1382 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1382 RqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
|..+++.|+.++.. +|++|+++++|||++++++||+||+|+++..|+||+||++|.|+...+..|
T Consensus 294 R~~~l~~F~~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~ 358 (423)
T PRK04837 294 RLRILEEFTRGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 358 (423)
T ss_pred HHHHHHHHHcCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEE
Confidence 99999999976554 799999999999999999999999999999999999999999977655433
No 39
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.94 E-value=2.2e-25 Score=282.81 Aligned_cols=313 Identities=18% Similarity=0.215 Sum_probs=213.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH-HHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA-VLVNWKSELH 1070 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-------~~~GP~LIVVP~S-LLsQW~~Ef~ 1070 (2239)
..+.|+|..++..++. +.+.|+..+||+|||+.++..+...+... .....+|||+|+. |+.|+..++.
T Consensus 142 ~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 3789999999998875 77899999999999999887665433211 1234689999987 7788888888
Q ss_pred HHCCC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHh
Q 000101 1071 KWLPS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDL 1144 (2239)
Q Consensus 1071 KwaPs--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaL 1144 (2239)
.+... +.+..+.|+.....+.. .+ ...++|+|+|++.|..... .+...+..+|||||||+|... ...+...+
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~-~l-~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~ 295 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLY-RI-QQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIF 295 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHH-Hh-cCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHH
Confidence 88654 34455555443333222 12 3468999999999865432 333446789999999999653 33455566
Q ss_pred hccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000101 1145 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1224 (2239)
Q Consensus 1145 k~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLr 1224 (2239)
..+.....+++|||.- +.+.. +..++.....
T Consensus 296 ~~l~~~q~l~~SATl~-~~v~~------------------l~~~~~~~~~------------------------------ 326 (518)
T PLN00206 296 QALSQPQVLLFSATVS-PEVEK------------------FASSLAKDII------------------------------ 326 (518)
T ss_pred HhCCCCcEEEEEeeCC-HHHHH------------------HHHHhCCCCE------------------------------
Confidence 6666677899999952 11111 1111100000
Q ss_pred hHHhhHhHhhhhcCCCCc--eEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000101 1225 PFMLRRRVEDVEGSLPPK--VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1302 (2239)
Q Consensus 1225 PFmLRRlKkDVekdLP~K--~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRK 1302 (2239)
.+.. . ....+.. ...+++|.
T Consensus 327 --~i~~--~--~~~~~~~~v~q~~~~~~---------------------------------------------------- 348 (518)
T PLN00206 327 --LISI--G--NPNRPNKAVKQLAIWVE---------------------------------------------------- 348 (518)
T ss_pred --EEEe--C--CCCCCCcceeEEEEecc----------------------------------------------------
Confidence 0000 0 0000000 01111111
Q ss_pred HcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH-cCCeEEeecCCCCHHH
Q 000101 1303 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW-RQLVYRRIDGTTSLED 1381 (2239)
Q Consensus 1303 iCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~-rGiky~RLDGsts~ee 1381 (2239)
...|...|..+|........++||||+....++.|...|.. .|+.+..+||+++.++
T Consensus 349 ----------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~e 406 (518)
T PLN00206 349 ----------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKE 406 (518)
T ss_pred ----------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHH
Confidence 00122333344443333346899999999999999999975 6999999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1382 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1382 RqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
|..+++.|+++... +|++|+++++|||++.+++||+||+|.+...|+||+||++|.|....+.+|
T Consensus 407 R~~il~~Fr~G~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f 471 (518)
T PLN00206 407 RREVMKSFLVGEVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVF 471 (518)
T ss_pred HHHHHHHHHCCCCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEE
Confidence 99999999975544 799999999999999999999999999999999999999999976555443
No 40
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=7.6e-25 Score=275.14 Aligned_cols=313 Identities=20% Similarity=0.261 Sum_probs=214.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-------~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
.++++|.+++..++. +.+.|++..||+|||+.++..+...+.... ....+|||+|+. |+.||.+++..
T Consensus 109 ~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 689999999987765 788999999999999998776665443222 134689999987 88889999888
Q ss_pred HCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhh
Q 000101 1072 WLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLD 1145 (2239)
Q Consensus 1072 waP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk 1145 (2239)
++. ++.+..++|+.+..... ..+....++|+|+|+++|..... .+.-.++++|||||+|++.+.. ..+.+.+.
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~-~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~ 263 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQL-KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIR 263 (475)
T ss_pred hhccCCCEEEEEEccCChHHHH-HHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHH
Confidence 864 45667777765433322 23444578999999999975432 2223367899999999996533 23444444
Q ss_pred ccc---cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1146 RYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1146 ~Lk---a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
.+. ....+++|||.. +++.++ .. .|...|....
T Consensus 264 ~~~~~~~~q~i~~SAT~~-~~~~~~---~~--------------~~~~~~~~v~-------------------------- 299 (475)
T PRK01297 264 QTPRKEERQTLLFSATFT-DDVMNL---AK--------------QWTTDPAIVE-------------------------- 299 (475)
T ss_pred hCCCCCCceEEEEEeecC-HHHHHH---HH--------------HhccCCEEEE--------------------------
Confidence 442 245788999942 111111 10 0010000000
Q ss_pred hhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1302 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRK 1302 (2239)
-....+ ........+++
T Consensus 300 -------~~~~~~---~~~~~~~~~~~----------------------------------------------------- 316 (475)
T PRK01297 300 -------IEPENV---ASDTVEQHVYA----------------------------------------------------- 316 (475)
T ss_pred -------eccCcC---CCCcccEEEEE-----------------------------------------------------
Confidence 000000 00000000000
Q ss_pred HcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHH
Q 000101 1303 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1382 (2239)
Q Consensus 1303 iCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeR 1382 (2239)
+..+.|..+|..++.. ....++||||+....++.|..+|...|+.+..++|.++.++|
T Consensus 317 --------------------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R 374 (475)
T PRK01297 317 --------------------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKR 374 (475)
T ss_pred --------------------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHH
Confidence 0011244444444432 234699999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1383 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1383 qeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
.++++.|++++.. +|++|+++++|||++++|+||+||.|++...|.|++||++|.|+...+.+|
T Consensus 375 ~~~~~~Fr~G~~~---vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~ 438 (475)
T PRK01297 375 IKTLEGFREGKIR---VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISF 438 (475)
T ss_pred HHHHHHHhCCCCc---EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEE
Confidence 9999999975544 789999999999999999999999999999999999999999987654443
No 41
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.1e-24 Score=275.87 Aligned_cols=314 Identities=22% Similarity=0.304 Sum_probs=226.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH--hCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF--KGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~--k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
...|.|..++..++. +...|....||+|||+.++..+...+.. .....++||++|+. |..|..+++.++..
T Consensus 51 ~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 51 EPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 678999999988886 6788999999999999998888777652 22222389999998 77888888888865
Q ss_pred -CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccCh--hhHHHHHhhcccc
Q 000101 1075 -SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC 1149 (2239)
Q Consensus 1075 -slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lka 1149 (2239)
.+.+++++|+.....+. ..+.. ..+|||+|+++++... ..|...+..++|+|||++|.+. ...+...+..++.
T Consensus 127 ~~~~~~~i~GG~~~~~q~-~~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~ 204 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQI-EALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP 204 (513)
T ss_pred CCccEEEEECCCCHHHHH-HHHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc
Confidence 56777888877766666 44444 5999999999998664 3466668899999999999764 4456666667665
Q ss_pred ce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1150 QR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1150 ~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
.+ .++.|||--. . ++.+..- |.. .|..+
T Consensus 205 ~~qtllfSAT~~~-~---i~~l~~~---------------~l~--------------------------------~p~~i 233 (513)
T COG0513 205 DRQTLLFSATMPD-D---IRELARR---------------YLN--------------------------------DPVEI 233 (513)
T ss_pred ccEEEEEecCCCH-H---HHHHHHH---------------Hcc--------------------------------CCcEE
Confidence 44 5677999311 1 1111000 000 01000
Q ss_pred hHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1229 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1229 RRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
..-........+.....++.|.-
T Consensus 234 ~v~~~~~~~~~~~i~q~~~~v~~--------------------------------------------------------- 256 (513)
T COG0513 234 EVSVEKLERTLKKIKQFYLEVES--------------------------------------------------------- 256 (513)
T ss_pred EEccccccccccCceEEEEEeCC---------------------------------------------------------
Confidence 00000000000011111111100
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHH
Q 000101 1309 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1388 (2239)
Q Consensus 1309 L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~ 1388 (2239)
...|+.+|..+|.... ..++||||.....++.|...|..+|+++..|||++++++|.++++.
T Consensus 257 ----------------~~~k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~ 318 (513)
T COG0513 257 ----------------EEEKLELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEK 318 (513)
T ss_pred ----------------HHHHHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHH
Confidence 0137777777776543 3379999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEE
Q 000101 1389 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1389 FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~V 1448 (2239)
|+++... +||+|+++++|||++.+++||+||.|.++..|+||+||++|.|.+.....
T Consensus 319 F~~g~~~---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~ 375 (513)
T COG0513 319 FKDGELR---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAIS 375 (513)
T ss_pred HHcCCCC---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEE
Confidence 9975555 79999999999999999999999999999999999999999996654433
No 42
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.93 E-value=9.9e-24 Score=267.47 Aligned_cols=420 Identities=20% Similarity=0.219 Sum_probs=250.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
..||+||.+-++-.+ +.|.|+|..||+|||.+|+.++...++.... +.++++||+. |+.|....|..++-.-.
T Consensus 61 ~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred ccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 489999999998777 6789999999999999998888888875554 8999999987 77777788888774444
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhccc---CCceEEEecccccc-cC-hhhHHHHHhhcc--ccc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSK---VDWKYIIIDEAQRM-KD-RESVLARDLDRY--RCQ 1150 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~k---ikWd~VIIDEAHrI-KN-~~SKlskaLk~L--ka~ 1150 (2239)
+....|+...+.... ......+|+|.|++.+.++...-.. ..|.+||||||||. +| +.+.+.+.+... ...
T Consensus 135 ~T~~l~~~~~~~~r~--~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRG--EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ceeeccCccCCCchh--hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccc
Confidence 444444422222111 2234678999999999988543222 35999999999998 44 333444444433 233
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCCh--HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR--KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~--k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
+.|+|||||- +++....+.++-|... +.-+ ......+.. .........+ +.. ....+..+|..+++|++.
T Consensus 213 qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~----lr~~~~i~v~-~~~-~~~~~~~~f~~~i~p~l~ 284 (746)
T KOG0354|consen 213 QILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEE----LREHVQIPVD-LSL-CERDIEDPFGMIIEPLLQ 284 (746)
T ss_pred cEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHH----HhccCcccCc-HHH-hhhhhhhhHHHHHHHHHH
Confidence 7899999997 7777766665555443 2111 111111100 0000001111 111 112345677888888765
Q ss_pred hHhHhhhhc------------------CCCCceEEEEEeccCHHHHHHHHH-HHHhcCcc-cCchhHHhhhhcChhhH--
Q 000101 1229 RRRVEDVEG------------------SLPPKVSIVLRCRMSAIQSAIYDW-IKATGTLR-VDPEDEKRRVQKNPIYQ-- 1286 (2239)
Q Consensus 1229 RRlKkDVek------------------dLP~K~e~VV~c~MS~~Qr~LY~~-I~~~~~l~-l~~~~ek~~l~k~~~~~-- 1286 (2239)
+-....+.. ..|........| +.......|.. +.....++ +...+.-..........
T Consensus 285 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 285 QLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNC-FYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHhcCccccccccccccchhhhhhhhhccCCCccchhh-HHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 544332211 011111111111 11111111110 01111110 00000000000000000
Q ss_pred -HHHH-HHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHh--cCCeEEEEEccHHHHHHHHHH
Q 000101 1287 -AKVY-KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR--TGHRVLLFSTMTKLLDILEEY 1362 (2239)
Q Consensus 1287 -~k~~-ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLka--tGhKVLIFSQ~t~~LDILed~ 1362 (2239)
.... ..+...++.+..-|.|-.... ....+|++.|.++|.+... ...|+|||+.++..++.|..+
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~-----------~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~ 432 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDP-----------PKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKW 432 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCC-----------CccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHH
Confidence 0000 001111111111111111110 1235799999999988764 357999999999999999999
Q ss_pred HH-H--cCCeEEeecC--------CCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHH
Q 000101 1363 LQ-W--RQLVYRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEE 1431 (2239)
Q Consensus 1363 L~-~--rGiky~RLDG--------sts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dl 1431 (2239)
|. . .|++...+-| +|++.+..++|++|++++.+ +|++|.+|.+|||+..||.||.||..-||...+
T Consensus 433 l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmI 509 (746)
T KOG0354|consen 433 LLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIRMV 509 (746)
T ss_pred HHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHHHH
Confidence 87 2 2455555555 68889999999999986655 799999999999999999999999999999999
Q ss_pred HhhhhhcccCCcceEEEEE
Q 000101 1432 QAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1432 QAiGRAhRIGQkKeV~Vyr 1450 (2239)
||+|| +|.-..+-|.++.
T Consensus 510 QrrGR-gRa~ns~~vll~t 527 (746)
T KOG0354|consen 510 QRRGR-GRARNSKCVLLTT 527 (746)
T ss_pred HHhcc-ccccCCeEEEEEc
Confidence 99999 8876666665554
No 43
>PTZ00424 helicase 45; Provisional
Probab=99.93 E-value=2.3e-24 Score=263.74 Aligned_cols=312 Identities=19% Similarity=0.241 Sum_probs=209.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--V 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs--l 1076 (2239)
.+.|+|..++..++. +.+.|+..+||+|||++++..+...+........+|||+|+. |+.||...+..++.. +
T Consensus 50 ~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 699999999998875 778899999999999988777666654333445789999977 777788777777643 4
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHHhhcccc-ce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRC-QR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka-~r 1151 (2239)
.+..+.|....+... ... ....+|+|+|++.+.... ..+...++++|||||||++.. ....+...+..+.. ..
T Consensus 126 ~~~~~~g~~~~~~~~-~~~-~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~ 203 (401)
T PTZ00424 126 RCHACVGGTVVRDDI-NKL-KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQ 203 (401)
T ss_pred eEEEEECCcCHHHHH-HHH-cCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcE
Confidence 445556655443332 112 235789999999886542 233345789999999999854 33445556666643 45
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.+++|||+- +.+.++. .. ++..|.... +.
T Consensus 204 ~i~~SAT~~-~~~~~~~---~~--------------~~~~~~~~~-------------------------------~~-- 232 (401)
T PTZ00424 204 VALFSATMP-NEILELT---TK--------------FMRDPKRIL-------------------------------VK-- 232 (401)
T ss_pred EEEEEecCC-HHHHHHH---HH--------------HcCCCEEEE-------------------------------eC--
Confidence 788999952 1111110 00 000000000 00
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
...+ .+.......+.+. ..
T Consensus 233 ~~~~--~~~~~~~~~~~~~--~~--------------------------------------------------------- 251 (401)
T PTZ00424 233 KDEL--TLEGIRQFYVAVE--KE--------------------------------------------------------- 251 (401)
T ss_pred CCCc--ccCCceEEEEecC--hH---------------------------------------------------------
Confidence 0000 0000000011100 00
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
..++..+..++.. ....++||||.....++.+...|...++.+..+||+++.++|..+++.|++
T Consensus 252 --------------~~~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~ 315 (401)
T PTZ00424 252 --------------EWKFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS 315 (401)
T ss_pred --------------HHHHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 0011222222221 134689999999999999999999999999999999999999999999997
Q ss_pred CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEE
Q 000101 1392 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1392 ~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~V 1448 (2239)
+... +|++|+++++|||++++++||+||++.+...|.|++||++|.|....+.+
T Consensus 316 g~~~---vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~ 369 (401)
T PTZ00424 316 GSTR---VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAIN 369 (401)
T ss_pred CCCC---EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEE
Confidence 5544 79999999999999999999999999999999999999999996654433
No 44
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.93 E-value=2.6e-24 Score=277.59 Aligned_cols=304 Identities=18% Similarity=0.177 Sum_probs=214.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
.++|+|.+++.-++. +.++|+..+||+|||++++..+.. ..+.+|||+|+. |+.+|...|... ++.+
T Consensus 25 ~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~------~~g~tlVisPl~sL~~dqv~~l~~~--gi~~ 92 (607)
T PRK11057 25 QFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALV------LDGLTLVVSPLISLMKDQVDQLLAN--GVAA 92 (607)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHH------cCCCEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 799999999998775 778999999999999887655432 135789999976 778888888765 3555
Q ss_pred EEEecchh--hHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccChhh-------HHHHHhhcc
Q 000101 1079 IYYVGAKD--QRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDRY 1147 (2239)
Q Consensus 1079 vvy~Gskd--~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~~S-------KlskaLk~L 1147 (2239)
.++.+... ........+..+.++++++|++.+... ...+...++.+|||||||.+..... .+......+
T Consensus 93 ~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~ 172 (607)
T PRK11057 93 ACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172 (607)
T ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC
Confidence 55544432 223344445667889999999998743 3445556789999999999865332 222222334
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
.....++||||+-.....+++..+.+..|.++.. .|.
T Consensus 173 p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~------~~~------------------------------------- 209 (607)
T PRK11057 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------SFD------------------------------------- 209 (607)
T ss_pred CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC------CCC-------------------------------------
Confidence 4556899999986555555555444332222100 000
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
.|.....++.
T Consensus 210 -----------r~nl~~~v~~----------------------------------------------------------- 219 (607)
T PRK11057 210 -----------RPNIRYTLVE----------------------------------------------------------- 219 (607)
T ss_pred -----------CCcceeeeee-----------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~ 1387 (2239)
...++..|..++. ...+.++||||..+..++.+...|...|+.+..+||+++.++|.++++
T Consensus 220 -----------------~~~~~~~l~~~l~--~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~ 280 (607)
T PRK11057 220 -----------------KFKPLDQLMRYVQ--EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQE 280 (607)
T ss_pred -----------------ccchHHHHHHHHH--hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 0001111112222 134678999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1388 ~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.|..+... +|++|.++|+|||++++++||+||+|.+...|.|++||++|.|....+.+++
T Consensus 281 ~F~~g~~~---VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~ 340 (607)
T PRK11057 281 AFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (607)
T ss_pred HHHCCCCC---EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEe
Confidence 99875444 7899999999999999999999999999999999999999999876655543
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=6.3e-24 Score=273.43 Aligned_cols=303 Identities=20% Similarity=0.201 Sum_probs=218.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
++||+|.+++.-++. +.+.|++..||.|||+.+...+. + ..+.+|||+|+. |+.++...+... ++.+
T Consensus 13 ~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~----~~g~~lVisPl~sL~~dq~~~l~~~--gi~~ 80 (591)
T TIGR01389 13 DFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--L----LKGLTVVISPLISLMKDQVDQLRAA--GVAA 80 (591)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--H----cCCcEEEEcCCHHHHHHHHHHHHHc--CCcE
Confidence 799999999988875 67899999999999998865443 2 245789999965 788898888875 4566
Q ss_pred EEEecch--hhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccChhh-------HHHHHhhcc
Q 000101 1079 IYYVGAK--DQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDRY 1147 (2239)
Q Consensus 1079 vvy~Gsk--d~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~~S-------KlskaLk~L 1147 (2239)
..+.+.. .++......+..+..+|+++|++.+... ...+...++.+|||||||.+..... .+......+
T Consensus 81 ~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~ 160 (591)
T TIGR01389 81 AYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERF 160 (591)
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhC
Confidence 6666553 3334445556667899999999998643 3456667899999999999854321 233333445
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
.....++||||+-.....+++..+.+-.+..|.. .|.
T Consensus 161 ~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~~------------------------------------- 197 (591)
T TIGR01389 161 PQVPRIALTATADAETRQDIRELLRLADANEFIT------SFD------------------------------------- 197 (591)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CCC-------------------------------------
Confidence 4555899999986555555554443322211100 000
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
.|.....++.
T Consensus 198 -----------r~nl~~~v~~----------------------------------------------------------- 207 (591)
T TIGR01389 198 -----------RPNLRFSVVK----------------------------------------------------------- 207 (591)
T ss_pred -----------CCCcEEEEEe-----------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~ 1387 (2239)
...+...|..+|... .+.++||||.....++.|.++|...|+.+..+||+++.++|..+++
T Consensus 208 -----------------~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~ 268 (591)
T TIGR01389 208 -----------------KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQE 268 (591)
T ss_pred -----------------CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHH
Confidence 001222222333221 2678999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1388 ~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
.|..+... +|++|.++|.|||++++++||+||+|+|...|.|++||++|.|....+.++
T Consensus 269 ~F~~g~~~---vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~ 327 (591)
T TIGR01389 269 DFLYDDVK---VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILL 327 (591)
T ss_pred HHHcCCCc---EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEe
Confidence 99875443 799999999999999999999999999999999999999999977666544
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.92 E-value=1.6e-23 Score=274.87 Aligned_cols=307 Identities=17% Similarity=0.156 Sum_probs=210.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
..+||+|.++|..++. +.++|+...||.|||+.+...++. ..+.+|||+|+. |+.++...+.. .++.
T Consensus 459 ~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~------~~GiTLVISPLiSLmqDQV~~L~~--~GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQDQIMNLLQ--ANIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHh--CCCe
Confidence 4799999999998876 788999999999999988766542 136799999976 66656666554 2566
Q ss_pred eEEEecchh--hHHHHHHHHhh--cCccEEEEehhHHHHh---hhhc---c-cCCceEEEecccccccChhh------H-
Q 000101 1078 CIYYVGAKD--QRSRLFSQVAA--LKFNVLVTTYEFIMYD---RSKL---S-KVDWKYIIIDEAQRMKDRES------V- 1139 (2239)
Q Consensus 1078 vvvy~Gskd--~Rk~l~~~i~~--~kfdVVITTYE~L~kD---~s~L---~-kikWd~VIIDEAHrIKN~~S------K- 1139 (2239)
...+.++.. .....+..+.. +.++||++|++.+... ...+ . ...+.+|||||||.+..... .
T Consensus 527 Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~ 606 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG 606 (1195)
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHH
Confidence 666665533 23333333333 6789999999998632 1222 1 23478999999999865332 1
Q ss_pred HHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000101 1140 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1219 (2239)
Q Consensus 1140 lskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RL 1219 (2239)
+......+....+++||||.-.....++...|.+..+.+|. ..|..
T Consensus 607 L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr------~Sf~R---------------------------- 652 (1195)
T PLN03137 607 LGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR------QSFNR---------------------------- 652 (1195)
T ss_pred HHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee------cccCc----------------------------
Confidence 11222345556688999997655555555544433222211 00000
Q ss_pred HHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000101 1220 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1299 (2239)
Q Consensus 1220 hklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImq 1299 (2239)
|.....++. . ...
T Consensus 653 --------------------pNL~y~Vv~-k----~kk------------------------------------------ 665 (1195)
T PLN03137 653 --------------------PNLWYSVVP-K----TKK------------------------------------------ 665 (1195)
T ss_pred --------------------cceEEEEec-c----chh------------------------------------------
Confidence 000000000 0 000
Q ss_pred HHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCH
Q 000101 1300 LRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL 1379 (2239)
Q Consensus 1300 LRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~ 1379 (2239)
.+..|.+++.. ...+...||||..+..++.|..+|...|+.+..+||+++.
T Consensus 666 ----------------------------~le~L~~~I~~-~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~ 716 (1195)
T PLN03137 666 ----------------------------CLEDIDKFIKE-NHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDP 716 (1195)
T ss_pred ----------------------------HHHHHHHHHHh-cccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCH
Confidence 00111111111 0124578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1380 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1380 eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++|..++++|..++.. |||+|.++|+|||++++++||+||.|.+...|.|++|||+|.|....+.+|+
T Consensus 717 eeR~~vqe~F~~Gei~---VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 717 AQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHHHHHHHHHhcCCCc---EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999999975544 7899999999999999999999999999999999999999999887776665
No 47
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=2.5e-22 Score=260.26 Aligned_cols=307 Identities=17% Similarity=0.240 Sum_probs=207.9
Q ss_pred CCChHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-
Q 000101 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP- 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP- 1074 (2239)
.+|.++|.+++..++.-... ..+.||..+||+|||++++..+...+. ....+||++|+. |..||..+|.+|++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AGYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 37999999999999875432 246799999999999998776666554 235799999987 67899999999987
Q ss_pred -CCceEEEecchh--hHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccc---
Q 000101 1075 -SVSCIYYVGAKD--QRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR--- 1148 (2239)
Q Consensus 1075 -slkvvvy~Gskd--~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lk--- 1148 (2239)
++.+.+++|+.. .+......+..+.++|+|+|+..+.... .-.+..+|||||+|++.-. .+...+....
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~~--qr~~l~~~~~~~~ 385 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGVE--QRKKLREKGQGGF 385 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc---cccccceEEEechhhccHH--HHHHHHHhcccCC
Confidence 478888888643 3444555667778999999999886432 2246789999999997421 1112222222
Q ss_pred cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1149 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1149 a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
..+.|+|||||+...+. +..+ +. +.
T Consensus 386 ~~~~l~~SATp~prtl~----l~~~------~~-------l~-------------------------------------- 410 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLA----LTVY------GD-------LD-------------------------------------- 410 (630)
T ss_pred CCCEEEEeCCCCcHHHH----HHhc------CC-------cc--------------------------------------
Confidence 46789999999754321 1000 00 00
Q ss_pred hHhHhhhhcCCCCce--EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000101 1229 RRRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1306 (2239)
Q Consensus 1229 RRlKkDVekdLP~K~--e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnH 1306 (2239)
..+...+|... .....+.-..
T Consensus 411 ----~~~i~~~p~~r~~i~~~~~~~~~----------------------------------------------------- 433 (630)
T TIGR00643 411 ----TSIIDELPPGRKPITTVLIKHDE----------------------------------------------------- 433 (630)
T ss_pred ----eeeeccCCCCCCceEEEEeCcch-----------------------------------------------------
Confidence 00001122110 0000100000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccH--------HHHHHHHHHHHH--cCCeEEeecCC
Q 000101 1307 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT--------KLLDILEEYLQW--RQLVYRRIDGT 1376 (2239)
Q Consensus 1307 P~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t--------~~LDILed~L~~--rGiky~RLDGs 1376 (2239)
+ ..+...+.+....+++++|||... ..+..+.+.|.. .++.+..+||.
T Consensus 434 ---------------------~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~ 491 (630)
T TIGR00643 434 ---------------------K-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGR 491 (630)
T ss_pred ---------------------H-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 0 111112222234578888888654 233444455543 47889999999
Q ss_pred CCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCC-CcchHHHhhhhhcccCCcceEEEEE
Q 000101 1377 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1377 ts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW-NP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++.++|..++++|.+++.. +|++|.+.++|||++++++||++|.+. +...+.|+.||++|-|.+..|.++.
T Consensus 492 m~~~eR~~i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 492 MKSDEKEAVMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CCHHHHHHHHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999999975554 799999999999999999999999985 6788999999999999876665554
No 48
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=2.3e-22 Score=270.94 Aligned_cols=359 Identities=18% Similarity=0.187 Sum_probs=212.4
Q ss_pred CCChHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 999 GTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
..||+||.+++..+...+. ...++||++.||+|||+++++++..++. .+..+++|||||.. |+.||..+|..+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~-~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK-AKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh-cCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 4799999999988876554 3467899999999999999999888775 34457899999965 9999999999874321
Q ss_pred c-eE--EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh-------hcccCCceEEEecccccccCh----------
Q 000101 1077 S-CI--YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS-------KLSKVDWKYIIIDEAQRMKDR---------- 1136 (2239)
Q Consensus 1077 k-vv--vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s-------~L~kikWd~VIIDEAHrIKN~---------- 1136 (2239)
. .+ +|.. . .+..........|+|+|+.++.+... .+....|++||||||||....
T Consensus 491 ~~~~~~i~~i-~----~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~ 565 (1123)
T PRK11448 491 DQTFASIYDI-K----GLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQ 565 (1123)
T ss_pred ccchhhhhch-h----hhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhc
Confidence 1 11 1211 1 11111223457899999999876421 123357899999999996310
Q ss_pred -------hhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000101 1137 -------ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1209 (2239)
Q Consensus 1137 -------~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ 1209 (2239)
.++..+.|..|. ..+|+|||||..++ + ..|+.|+....
T Consensus 566 ~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t----~------------------~~FG~pv~~Ys------------ 610 (1123)
T PRK11448 566 FRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT----T------------------EIFGEPVYTYS------------ 610 (1123)
T ss_pred cchhhhHHHHHHHHHhhcC-ccEEEEecCCccch----h------------------HHhCCeeEEee------------
Confidence 123333444343 58899999997432 1 12222322110
Q ss_pred HHHHHHHHHHHHhh-hhHHhhHhHhhhhcCCCCceEEEEE----eccC-HHHHHHHHHHHHhcC-cccCchhHHhhhhcC
Q 000101 1210 EKKVIIIHRLHQIL-EPFMLRRRVEDVEGSLPPKVSIVLR----CRMS-AIQSAIYDWIKATGT-LRVDPEDEKRRVQKN 1282 (2239)
Q Consensus 1210 ee~~lii~RLhklL-rPFmLRRlKkDVekdLP~K~e~VV~----c~MS-~~Qr~LY~~I~~~~~-l~l~~~~ek~~l~k~ 1282 (2239)
+...+ ..+++. ..|+....... +... ..+...|+....... ..+. ++.
T Consensus 611 ---------l~eAI~DG~Lv~--------~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~--d~~------ 665 (1123)
T PRK11448 611 ---------YREAVIDGYLID--------HEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLE--DEV------ 665 (1123)
T ss_pred ---------HHHHHhcCCccc--------CcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCc--HHH------
Confidence 00000 001100 00111111100 0000 011111211100000 0000 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHH-HHHHHHHHHHh-cCCeEEEEEccHHHHHHHH
Q 000101 1283 PIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLW-ILDRILIKLQR-TGHRVLLFSTMTKLLDILE 1360 (2239)
Q Consensus 1283 ~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLe-lLdrIL~kLka-tGhKVLIFSQ~t~~LDILe 1360 (2239)
.+ ....+. +.+. . . .... ++..++..+.. .+.|+||||....+++.|.
T Consensus 666 -~~---~~~~~~------~~vi-~------------------~-~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~ 715 (1123)
T PRK11448 666 -DF---EVEDFN------RRVI-T------------------E-SFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVV 715 (1123)
T ss_pred -hh---hHHHHH------HHHh-h------------------H-HHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHH
Confidence 00 000000 0000 0 0 0000 11222222211 2369999999999999888
Q ss_pred HHHHHc------CC---eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHH
Q 000101 1361 EYLQWR------QL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEE 1431 (2239)
Q Consensus 1361 d~L~~r------Gi---ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dl 1431 (2239)
+.|... ++ .+..++|+++ ++.+++++|.+ ..+..||++++..++|+|++.+++||+++++-++..|.
T Consensus 716 ~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~--~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~ 791 (1123)
T PRK11448 716 RLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN--ERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYE 791 (1123)
T ss_pred HHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC--CCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHH
Confidence 877643 22 3567999985 57889999986 34457899999999999999999999999999999999
Q ss_pred HhhhhhcccCC---cceEEEEEEehhhhh
Q 000101 1432 QAVARAHRIGQ---KREVKVIYMEAVVDK 1457 (2239)
Q Consensus 1432 QAiGRAhRIGQ---kKeV~VyrLvaVEEk 1457 (2239)
|++||+.|+.- |..+.||.++.+.+.
T Consensus 792 QmIGRgtR~~~~~~K~~f~I~D~vg~~~~ 820 (1123)
T PRK11448 792 QMLGRATRLCPEIGKTHFRIFDAVDIYEA 820 (1123)
T ss_pred HHHhhhccCCccCCCceEEEEehHHHHHh
Confidence 99999999854 667889988775443
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.90 E-value=5.1e-22 Score=263.81 Aligned_cols=305 Identities=16% Similarity=0.206 Sum_probs=211.5
Q ss_pred CCChHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs 1075 (2239)
.++.|+|..++..++.-.... .+.|++.+||+|||++++..+...+.. ...+||+||+. |+.|+...|.+++..
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 468999999999998754432 467999999999999887666554432 25799999987 778899999998865
Q ss_pred --CceEEEecch--hhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccc-cc
Q 000101 1076 --VSCIYYVGAK--DQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1076 --lkvvvy~Gsk--d~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lk-a~ 1150 (2239)
+++.++.|.. .+++.....+..+..+|||+|+..+.++ +.-.+..+|||||+|++. ......|..+. ..
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~---v~f~~L~llVIDEahrfg---v~~~~~L~~~~~~~ 600 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKD---VKFKDLGLLIIDEEQRFG---VKQKEKLKELRTSV 600 (926)
T ss_pred CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCC---CCcccCCEEEeecccccc---hhHHHHHHhcCCCC
Confidence 4555565543 3455556666677899999999765432 222357899999999973 23344555554 34
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
..|+|||||+...+... +..+.++.++.
T Consensus 601 ~vL~~SATpiprtl~~~--l~g~~d~s~I~-------------------------------------------------- 628 (926)
T TIGR00580 601 DVLTLSATPIPRTLHMS--MSGIRDLSIIA-------------------------------------------------- 628 (926)
T ss_pred CEEEEecCCCHHHHHHH--HhcCCCcEEEe--------------------------------------------------
Confidence 68999999965433211 11111110000
Q ss_pred hHhhhhcCCCCce--EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1231 RVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1231 lKkDVekdLP~K~--e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
..|... .....+..+.
T Consensus 629 -------~~p~~R~~V~t~v~~~~~------------------------------------------------------- 646 (926)
T TIGR00580 629 -------TPPEDRLPVRTFVMEYDP------------------------------------------------------- 646 (926)
T ss_pred -------cCCCCccceEEEEEecCH-------------------------------------------------------
Confidence 000000 0000000000
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHH
Q 000101 1309 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1309 L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--Giky~RLDGsts~eeRqeiL 1386 (2239)
..+...++..+ ..+.+|+|||+.+..++.+.+.|... ++++..+||.|+.++|.+++
T Consensus 647 --------------------~~i~~~i~~el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im 705 (926)
T TIGR00580 647 --------------------ELVREAIRREL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVM 705 (926)
T ss_pred --------------------HHHHHHHHHHH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Confidence 00011112222 24789999999999999999999874 78999999999999999999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCC-CCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp-WNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.+|.+++.+ +||||++.++|||++++++||++|.+ +....+.|+.||++|.|.+..|.++.
T Consensus 706 ~~F~~Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~ 767 (926)
T TIGR00580 706 LEFYKGEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLY 767 (926)
T ss_pred HHHHcCCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEE
Confidence 999976555 79999999999999999999999996 46678999999999999776665543
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=7e-22 Score=257.95 Aligned_cols=306 Identities=17% Similarity=0.214 Sum_probs=208.2
Q ss_pred CCChHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000101 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs 1075 (2239)
.+|.++|..++..+..-... ..+.||..+||+|||+.++..+...+. ....+||++|+. |..|+...|.+|++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 37999999999988875432 246799999999999998877765543 234799999987 778899999999865
Q ss_pred --CceEEEecchh--hHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-ccc
Q 000101 1076 --VSCIYYVGAKD--QRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQ 1150 (2239)
Q Consensus 1076 --lkvvvy~Gskd--~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~ 1150 (2239)
+.+.+++|+.. .+......+..+..+|+|+|+..+.... .-.+..+|||||+|++.- .....+... ...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v---~~~~l~lvVIDE~Hrfg~---~qr~~l~~~~~~~ 410 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV---EFHNLGLVIIDEQHRFGV---EQRLALREKGENP 410 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc---hhcccceEEEechhhhhH---HHHHHHHhcCCCC
Confidence 67788888754 4555566677778999999998875432 223678999999999832 222233322 346
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
+.|+|||||+...+. +..+ +. +..
T Consensus 411 ~iL~~SATp~prtl~----~~~~------g~-----------------------------------------~~~----- 434 (681)
T PRK10917 411 HVLVMTATPIPRTLA----MTAY------GD-----------------------------------------LDV----- 434 (681)
T ss_pred CEEEEeCCCCHHHHH----HHHc------CC-----------------------------------------Cce-----
Confidence 689999999643221 1000 00 000
Q ss_pred hHhhhhcCCCCce--EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1231 RVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1231 lKkDVekdLP~K~--e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
.+...+|... .....+..
T Consensus 435 ---s~i~~~p~~r~~i~~~~~~~--------------------------------------------------------- 454 (681)
T PRK10917 435 ---SVIDELPPGRKPITTVVIPD--------------------------------------------------------- 454 (681)
T ss_pred ---EEEecCCCCCCCcEEEEeCc---------------------------------------------------------
Confidence 0000112110 00000000
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHH--------HHHHHHHHHHHc--CCeEEeecCCCC
Q 000101 1309 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQWR--QLVYRRIDGTTS 1378 (2239)
Q Consensus 1309 L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~--------~LDILed~L~~r--Giky~RLDGsts 1378 (2239)
.+...+...+.+....+++++|||.... .+..+.+.|... ++.+..+||+++
T Consensus 455 ------------------~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~ 516 (681)
T PRK10917 455 ------------------SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMK 516 (681)
T ss_pred ------------------ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCC
Confidence 0001111222223356889999997532 234455555544 578999999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCC-CcchHHHhhhhhcccCCcceEEEEE
Q 000101 1379 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1379 ~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW-NP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.++|.+++++|.++... +|+||++.++|||++++++||++|++. ....+.|+.||++|.|.+..|.++.
T Consensus 517 ~~eR~~i~~~F~~g~~~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~ 586 (681)
T PRK10917 517 PAEKDAVMAAFKAGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLY 586 (681)
T ss_pred HHHHHHHHHHHHcCCCC---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEE
Confidence 99999999999975544 799999999999999999999999985 5688999999999999776665554
No 51
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.90 E-value=1.1e-21 Score=257.67 Aligned_cols=317 Identities=16% Similarity=0.128 Sum_probs=208.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CCCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PSVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa-Pslk 1077 (2239)
+|+++|.+++..++. +.+.|++..||+|||+.++..+...+.. .....+|||+|+. |..|...+|.++. .++.
T Consensus 36 ~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 699999999988875 8889999999999999998877766543 2345789999987 6678888888886 3577
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--------hhcccCCceEEEecccccccC-hhhHHHHHhhcc-
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRY- 1147 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--------s~L~kikWd~VIIDEAHrIKN-~~SKlskaLk~L- 1147 (2239)
+.+|.|......+ . ......+|+|||++++.... ..| .+.++|||||||.+.+ ..+.+...+.++
T Consensus 111 v~~~~Gdt~~~~r--~-~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l--~~l~~vViDEah~~~g~fg~~~~~il~rL~ 185 (742)
T TIGR03817 111 PATYDGDTPTEER--R-WAREHARYVLTNPDMLHRGILPSHARWARFL--RRLRYVVIDECHSYRGVFGSHVALVLRRLR 185 (742)
T ss_pred EEEEeCCCCHHHH--H-HHhcCCCEEEEChHHHHHhhccchhHHHHHH--hcCCEEEEeChhhccCccHHHHHHHHHHHH
Confidence 7888887553322 1 22235799999999986321 112 2568999999999965 334433333332
Q ss_pred ------c-cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000101 1148 ------R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1220 (2239)
Q Consensus 1148 ------k-a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLh 1220 (2239)
. ....+++|||- .| ..++.. . ++..|+....
T Consensus 186 ri~~~~g~~~q~i~~SATi-~n-~~~~~~---~--------------l~g~~~~~i~----------------------- 223 (742)
T TIGR03817 186 RLCARYGASPVFVLASATT-AD-PAAAAS---R--------------LIGAPVVAVT----------------------- 223 (742)
T ss_pred HHHHhcCCCCEEEEEecCC-CC-HHHHHH---H--------------HcCCCeEEEC-----------------------
Confidence 1 23578899994 22 222211 1 1111110000
Q ss_pred HhhhhHHhhHhHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000101 1221 QILEPFMLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1299 (2239)
Q Consensus 1221 klLrPFmLRRlKkDVekdLP~K~-e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImq 1299 (2239)
....|... ...++.+ .. +. + .. . .. ..
T Consensus 224 ---------------~~~~~~~~~~~~~~~p-~~-----~~-~--------~~--~-~~---~~---------------- 251 (742)
T TIGR03817 224 ---------------EDGSPRGARTVALWEP-PL-----TE-L--------TG--E-NG---AP---------------- 251 (742)
T ss_pred ---------------CCCCCcCceEEEEecC-Cc-----cc-c--------cc--c-cc---cc----------------
Confidence 00011111 1111110 00 00 0 00 0 00 00
Q ss_pred HHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--------CCeEE
Q 000101 1300 LRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--------QLVYR 1371 (2239)
Q Consensus 1300 LRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--------Giky~ 1371 (2239)
.| . .....+..+|..+ ...+.++||||+.+..++.|..+|... +..+.
T Consensus 252 ~r-----------------~---~~~~~~~~~l~~l----~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~ 307 (742)
T TIGR03817 252 VR-----------------R---SASAEAADLLADL----VAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVA 307 (742)
T ss_pred cc-----------------c---chHHHHHHHHHHH----HHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchh
Confidence 00 0 0000133333333 345789999999999999999988753 56777
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEE
Q 000101 1372 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1447 (2239)
Q Consensus 1372 RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~ 1447 (2239)
.+||+++.++|.+++++|.++... +|++|+++++|||+.++|+||+||.|-+...|.||+||++|.|....+.
T Consensus 308 ~~hgg~~~~eR~~ie~~f~~G~i~---vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai 380 (742)
T TIGR03817 308 AYRAGYLPEDRRELERALRDGELL---GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVV 380 (742)
T ss_pred heecCCCHHHHHHHHHHHHcCCce---EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEE
Confidence 899999999999999999975443 7999999999999999999999999999999999999999999775543
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.89 E-value=8.9e-22 Score=266.16 Aligned_cols=307 Identities=18% Similarity=0.216 Sum_probs=209.5
Q ss_pred CCChHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000101 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs 1075 (2239)
.++.+.|..++.-++.-... ..+.|++.+||+|||.+++..+...+. ....+|||||+. |+.|+...|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 37899999999988775432 256799999999999987654433332 345799999988 668888889887754
Q ss_pred --CceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccc-cc
Q 000101 1076 --VSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1076 --lkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lk-a~ 1150 (2239)
+.+.++.|. ...+......+..+..+|||+|++.+..+ +.-.++.+|||||+|++.. .....+..++ ..
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~---~~~e~lk~l~~~~ 749 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV---RHKERIKAMRADV 749 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch---hHHHHHHhcCCCC
Confidence 455555543 34444445555567889999999876532 2224688999999999832 2334455554 34
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
..|+|||||+...+.-. +..+.++.++. .+ |
T Consensus 750 qvLl~SATpiprtl~l~--~~gl~d~~~I~----------~~--------------------------------p----- 780 (1147)
T PRK10689 750 DILTLTATPIPRTLNMA--MSGMRDLSIIA----------TP--------------------------------P----- 780 (1147)
T ss_pred cEEEEcCCCCHHHHHHH--HhhCCCcEEEe----------cC--------------------------------C-----
Confidence 68999999976543211 11111110000 00 0
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
...+|-+ + +.....
T Consensus 781 -----~~r~~v~--~-~~~~~~---------------------------------------------------------- 794 (1147)
T PRK10689 781 -----ARRLAVK--T-FVREYD---------------------------------------------------------- 794 (1147)
T ss_pred -----CCCCCce--E-EEEecC----------------------------------------------------------
Confidence 0000000 0 000000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHHHH
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVD 1388 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--Giky~RLDGsts~eeRqeiL~~ 1388 (2239)
.......++.++. .+.+|+|||+.+..++.+.+.|... ++.+..+||.|+.++|.+++.+
T Consensus 795 -----------------~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~ 856 (1147)
T PRK10689 795 -----------------SLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND 856 (1147)
T ss_pred -----------------cHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHH
Confidence 0001122333333 3678999999999999999999877 7889999999999999999999
Q ss_pred HhcCCCCccEEEEeccccccccCCCcCceEEEcCCC-CCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1389 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1389 FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp-WNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
|.+++.+ +||||+++++|||++++++||+.+++ |+...+.|+.||++|.|.+..|.++.
T Consensus 857 Fr~Gk~~---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 857 FHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred HHhcCCC---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEe
Confidence 9976555 79999999999999999999988775 67888999999999999887665543
No 53
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.89 E-value=6.3e-22 Score=239.15 Aligned_cols=321 Identities=20% Similarity=0.236 Sum_probs=226.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC-----CeEEEechH-HHHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG-----PHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~G-----P~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
.+.+.|..++...+. +...|-|.-||+|||+.++..++..+. ...|. -+|||.|+. |..|....+.+..
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~-r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALY-RLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHH-HcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 577788888877775 667788999999999999887765443 23333 479999998 7778877777765
Q ss_pred --CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh---hcccCCceEEEecccccccCh--hhHHHHHhhc
Q 000101 1074 --PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1146 (2239)
Q Consensus 1074 --Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~ 1146 (2239)
..+..-++.|+.+..-+ ..+....||+|||+++|..+.. .|......++|+|||+||... ...+-.++..
T Consensus 166 k~h~fSaGLiiGG~~~k~E---~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~ 242 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFE---LERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIEN 242 (758)
T ss_pred hccccccceeecCchhHHH---HHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHh
Confidence 35677777888764332 3455688999999999987753 566668899999999999653 4445566667
Q ss_pred cccce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1147 YRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1147 Lka~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
++..+ -||+|||+. ++..||.- |++-+|.+..-. .+
T Consensus 243 lP~~RQTLLFSATqt-~svkdLaR-LsL~dP~~vsvh-----------------e~------------------------ 279 (758)
T KOG0343|consen 243 LPKKRQTLLFSATQT-KSVKDLAR-LSLKDPVYVSVH-----------------EN------------------------ 279 (758)
T ss_pred CChhheeeeeecccc-hhHHHHHH-hhcCCCcEEEEe-----------------cc------------------------
Confidence 76554 688899983 33344422 122222221100 00
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
.+.-++.+ |++.
T Consensus 280 ----------------------a~~atP~~--------------------------------------------L~Q~-- 291 (758)
T KOG0343|consen 280 ----------------------AVAATPSN--------------------------------------------LQQS-- 291 (758)
T ss_pred ----------------------ccccChhh--------------------------------------------hhhe--
Confidence 00000000 0000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--CCeEEeecCCCCHHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--Giky~RLDGsts~eeRq 1383 (2239)
| .++....|+.+|-..|.... ..|.|||......+.++.+.|... |++...|||.|++..|.
T Consensus 292 --y------------~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 292 --Y------------VIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred --E------------EEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 0 01122236666666555433 468999988888888887777643 89999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhh
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKI 1458 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI 1458 (2239)
++..+|.. ...++|+||+++++|||++.+|.||.||.|-+...|+||.||+.|.+...+..++..-..++.+
T Consensus 356 ev~~~F~~---~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~ 427 (758)
T KOG0343|consen 356 EVYKKFVR---KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAM 427 (758)
T ss_pred HHHHHHHH---hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHH
Confidence 99999986 3357999999999999999999999999999999999999999999988888777654433443
No 54
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.89 E-value=2.8e-21 Score=258.03 Aligned_cols=326 Identities=17% Similarity=0.154 Sum_probs=203.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechH-HHHHHHHH---
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNA-VLVNWKSE--- 1068 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~------~~GP~LIVVP~S-LLsQW~~E--- 1068 (2239)
++|+|+|..++..++. +.++|++..||+|||++++..+...+.... ....+|+|+|+. |..++...
T Consensus 31 ~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3699999999987754 789999999999999998776654433221 123489999987 66666553
Q ss_pred ----HHHHC-------CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hc--ccCCceEEEecccccc
Q 000101 1069 ----LHKWL-------PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KL--SKVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1069 ----f~Kwa-------Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L--~kikWd~VIIDEAHrI 1133 (2239)
+..|+ +.+.+.+++|......+. ......++|+|||++++..... .+ .-.+.++|||||+|.+
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~--~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l 184 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ--KMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSL 184 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH--HHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhh
Confidence 33443 356777888875433221 1223468999999999853321 11 1125688999999999
Q ss_pred cCh--hhHHHHHhhc---c--ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhh
Q 000101 1134 KDR--ESVLARDLDR---Y--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1206 (2239)
Q Consensus 1134 KN~--~SKlskaLk~---L--ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~ 1206 (2239)
.+. ...+...+.+ + ....+++||||. .++.++.. ||..... . +..
T Consensus 185 ~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~---------------~-~~~------- 236 (876)
T PRK13767 185 AENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYED---------------D-GEP------- 236 (876)
T ss_pred ccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCccc---------------c-CCC-------
Confidence 743 2222223322 2 234689999995 22333322 2211000 0 000
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhH
Q 000101 1207 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1286 (2239)
Q Consensus 1207 l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~ 1286 (2239)
+++.+ +...........+.++.... +.
T Consensus 237 -----------------r~~~i------v~~~~~k~~~i~v~~p~~~l----~~-------------------------- 263 (876)
T PRK13767 237 -----------------RDCEI------VDARFVKPFDIKVISPVDDL----IH-------------------------- 263 (876)
T ss_pred -----------------CceEE------EccCCCccceEEEeccCccc----cc--------------------------
Confidence 00000 00000000011111110000 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc
Q 000101 1287 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1366 (2239)
Q Consensus 1287 ~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r 1366 (2239)
.. . ......+...|.++...++++||||+.+..++.+...|...
T Consensus 264 -------------------------~~-----~------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 264 -------------------------TP-----A------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred -------------------------cc-----c------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 00 0 00001122233344445789999999999999999988763
Q ss_pred ------CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhccc
Q 000101 1367 ------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1367 ------Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRI 1440 (2239)
+..+..+||+++.++|..+++.|+++... +|+||.++++|||++++|+||+||+|.+...|+||+||++|.
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~---vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK---VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe---EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 46788899999999999999999975433 799999999999999999999999999999999999999986
Q ss_pred -CCcceEEEEE
Q 000101 1441 -GQKREVKVIY 1450 (2239)
Q Consensus 1441 -GQkKeV~Vyr 1450 (2239)
|......++.
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4444444443
No 55
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=4.9e-23 Score=211.09 Aligned_cols=104 Identities=14% Similarity=0.315 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
|+.+|++||+.|...+|++||.++..|+.+|++.++||||++ |++||||.+|.+||++++|.++++|..||.|||.||+
T Consensus 1 ~~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 1 MQQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDV-IKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred ChHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLK 2042 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k 2042 (2239)
.||+++|.+|.+|..|+++|.++.+
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998753
No 56
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.88 E-value=1.3e-21 Score=235.87 Aligned_cols=313 Identities=22% Similarity=0.302 Sum_probs=217.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHH---H
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELH---K 1071 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~----~~GP~LIVVP~S-LLsQW~~Ef~---K 1071 (2239)
+|-+-|...+.-++. +...+.+.-||+|||+.++..+..++.... +.-.+|||||+. |..|...|.+ +
T Consensus 104 ~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 677888888776665 667899999999999999888777654311 122479999998 5666666544 5
Q ss_pred HCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccC--hhhHHHHHhhc
Q 000101 1072 WLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKD--RESVLARDLDR 1146 (2239)
Q Consensus 1072 waPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN--~~SKlskaLk~ 1146 (2239)
+.++..+.+..|+..-+..... +.. ..+++|.|++.|..+... +.....+++|||||+|+.. +.-.+-+++..
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~k-l~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~ 257 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADK-LVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKI 257 (543)
T ss_pred hCCCcceEEEeCCccchHHHHH-hhc-cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHh
Confidence 5567788888887665444322 333 889999999999877532 2222447999999999954 55566677777
Q ss_pred cccce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1147 YRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1147 Lka~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
++..+ -+++|||- ...+ ..|..+
T Consensus 258 lpk~rqt~LFSAT~-~~kV----------------------------------------------------~~l~~~--- 281 (543)
T KOG0342|consen 258 LPKQRQTLLFSATQ-PSKV----------------------------------------------------KDLARG--- 281 (543)
T ss_pred ccccceeeEeeCCC-cHHH----------------------------------------------------HHHHHH---
Confidence 76554 46778882 0000 011111
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
.|++ + ...+.|. + ..+.. .-..+.+-
T Consensus 282 -~L~~---d---------~~~v~~~--------------------d-~~~~~------------------The~l~Qg-- 307 (543)
T KOG0342|consen 282 -ALKR---D---------PVFVNVD--------------------D-GGERE------------------THERLEQG-- 307 (543)
T ss_pred -hhcC---C---------ceEeecC--------------------C-CCCcc------------------hhhcccce--
Confidence 0110 0 0011110 0 00000 00001110
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1385 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqei 1385 (2239)
-.+.....+|-+|..+|.+.... .||||||....+..++.+.|+...+++..|||..++..|..+
T Consensus 308 --------------yvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~ 372 (543)
T KOG0342|consen 308 --------------YVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTST 372 (543)
T ss_pred --------------EEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchH
Confidence 00112233567777777776533 899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceE
Q 000101 1386 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1386 L~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV 1446 (2239)
..+|...++. ||+||+++++|+|++++|.||.||+|-+|..|+||+||++|-|-+.+.
T Consensus 373 ~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~a 430 (543)
T KOG0342|consen 373 FFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKA 430 (543)
T ss_pred HHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceE
Confidence 9999986666 899999999999999999999999999999999999999998877554
No 57
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.1e-22 Score=208.94 Aligned_cols=103 Identities=13% Similarity=0.253 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1937 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1937 ~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
.|+..|+++++.|...+|++||+++..|+.+|+|+++||||.+ |++||||.+|++||++++|.++++|..||+|||.||
T Consensus 2 ~l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~-I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 2 RLAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYER-ITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred hHHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhh-CCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 3667899999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHH
Q 000101 2017 MQFYGFSHEVRSEARKVHDLFFDL 2040 (2239)
Q Consensus 2017 ~~yn~~~sev~~dA~~L~~~f~~~ 2040 (2239)
+.||+++|++|++|+.|+++|.+.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999874
No 58
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.2e-22 Score=210.74 Aligned_cols=107 Identities=21% Similarity=0.359 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
-++|++|+++|.+.++++||.|+.+|+++|+|+++||||++ |++||||.+|++||++++|.++.+|..||.|||+||+.
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~i-I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 82 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEV-VSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKA 82 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHH-hCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2019 FYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
||+++|.+|++|..|+++|...++..-+
T Consensus 83 yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 83 YYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999887655
No 59
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=7.5e-21 Score=229.65 Aligned_cols=342 Identities=20% Similarity=0.304 Sum_probs=207.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-----CCCCC-eEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNYGP-HLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-----~~~GP-~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
.+.-.|..+|.-++. +...++-..||+|||+..+..|...+... ...|+ .|||||+. |+.|..+.+.+.
T Consensus 159 ~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 355678888887776 77789999999999999999887766432 22344 59999998 788888888888
Q ss_pred CCCCceEE---EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccC--hhhHHHHHh
Q 000101 1073 LPSVSCIY---YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKD--RESVLARDL 1144 (2239)
Q Consensus 1073 aPslkvvv---y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN--~~SKlskaL 1144 (2239)
...+.++| ..|+.....+. .-...+.+|+|.|++++..+... +...+..+||+|||++|.. ..-.++.+|
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEK--ARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il 312 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEK--ARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQIL 312 (708)
T ss_pred hcCceEEeeceeecccccccHH--HHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHH
Confidence 76555443 34442221111 12235789999999999987543 3333467899999999954 333344444
Q ss_pred hccc------c--------ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHH
Q 000101 1145 DRYR------C--------QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1210 (2239)
Q Consensus 1145 k~Lk------a--------~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~e 1210 (2239)
+.+. | ...+|||||- ...+.
T Consensus 313 ~~v~~~~~~e~~~~~lp~q~q~mLlSATL-td~V~--------------------------------------------- 346 (708)
T KOG0348|consen 313 KAVHSIQNAECKDPKLPHQLQNMLLSATL-TDGVN--------------------------------------------- 346 (708)
T ss_pred HHHhhccchhcccccccHHHHhHhhhhhh-HHHHH---------------------------------------------
Confidence 4331 1 1134555551 11111
Q ss_pred HHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHH
Q 000101 1211 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY 1290 (2239)
Q Consensus 1211 e~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ 1290 (2239)
+|..+- | +....|..+-+..|..
T Consensus 347 -------rLa~~s---------------L--kDpv~I~ld~s~~~~~--------------------------------- 369 (708)
T KOG0348|consen 347 -------RLADLS---------------L--KDPVYISLDKSHSQLN--------------------------------- 369 (708)
T ss_pred -------HHhhcc---------------c--cCceeeeccchhhhcC---------------------------------
Confidence 111100 0 0000011000000000
Q ss_pred HHHHHHHHHHHHHcCCCCCCCC----Cccccchhh-HhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHH
Q 000101 1291 KTLNNRCMELRKTCNHPLLNYP----YFSDLSKDF-LVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYL 1363 (2239)
Q Consensus 1291 ksL~niImqLRKiCnHP~L~~p----~~~~~s~d~-Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L 1363 (2239)
.....+..+|.-|+-..- ..+.+...+ ++..--.+.+|..+|.... ....|+|||....++++.-.+.|
T Consensus 370 ----p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf 445 (708)
T KOG0348|consen 370 ----PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLF 445 (708)
T ss_pred ----cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHH
Confidence 000000111111110000 000000000 1111124455666665543 23458899988888776655554
Q ss_pred H----H------------------cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEc
Q 000101 1364 Q----W------------------RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1421 (2239)
Q Consensus 1364 ~----~------------------rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIif 1421 (2239)
. . .+.++.+|||+|.+++|..++..|.... ..||+||+++++||||+.++.||.|
T Consensus 446 ~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~---~~VLLcTDVAaRGLDlP~V~~vVQY 522 (708)
T KOG0348|consen 446 SEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSR---RAVLLCTDVAARGLDLPHVGLVVQY 522 (708)
T ss_pred HhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcccc---ceEEEehhhhhccCCCCCcCeEEEe
Confidence 3 1 1457999999999999999999998632 3489999999999999999999999
Q ss_pred CCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhh
Q 000101 1422 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 1457 (2239)
Q Consensus 1422 DppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEk 1457 (2239)
|+|..+..|+||+||+.|+|-+.+...|.+-...+.
T Consensus 523 d~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey 558 (708)
T KOG0348|consen 523 DPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEY 558 (708)
T ss_pred CCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHH
Confidence 999999999999999999999988766665443333
No 60
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=1.9e-22 Score=207.40 Aligned_cols=105 Identities=16% Similarity=0.289 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
++++|+.|++.|.+..|++||.++..|+.+|++.++||||++ |++||||.+|+.||++++|.++.+|..||.|||.||+
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~i-I~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
.||+++|.+|.+|..|+++|.+++++
T Consensus 81 ~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 81 TFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999875
No 61
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=1.7e-22 Score=206.55 Aligned_cols=100 Identities=19% Similarity=0.330 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
|..|.+|++.|.+..|++||.|+++|+.+|+|.++||||++ |++||||.+|++||++++|.++.+|..||.|||+||+.
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~v-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAV-IKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKT 80 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHH-cCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHH
Q 000101 2019 FYGFSHEVRSEARKVHDLFFD 2039 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~ 2039 (2239)
||+++|.+|++|+.|+++|..
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999975
No 62
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.3e-21 Score=235.31 Aligned_cols=344 Identities=18% Similarity=0.210 Sum_probs=213.5
Q ss_pred CChHHHHHHHHHHHHhhcC-----CCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNN-----KLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n-----~lnGILADEMGLGKTIQAIALIa~Lie~k-~~~GP~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
.++|-|...+.|++.-.+. ....+++..||+|||+.....|..++..+ -.+-++|||||+. |+.|...+|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 7999999999999876552 23347889999999999999888887654 2445789999988 678899999999
Q ss_pred CCC--CceEEEecchhhHHHHHHHH---hhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccChhhH--HHH
Q 000101 1073 LPS--VSCIYYVGAKDQRSRLFSQV---AALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRESV--LAR 1142 (2239)
Q Consensus 1073 aPs--lkvvvy~Gskd~Rk~l~~~i---~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN~~SK--lsk 1142 (2239)
+++ +.|+...|....+.+..... .....+|+|+|+++|+.+... +.-.+..|+|||||+||.+.... +..
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~ 318 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDT 318 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHH
Confidence 975 45555667655554443332 233569999999999988653 33346789999999999764333 333
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
.+.......++.+++ .|..+..-.-|..|... ...|.+ ....|.++
T Consensus 319 v~~~~~~~k~~~~~~--------nii~~~~~~~pt~~~e~---~t~~~~-----------------------~~~~l~kL 364 (620)
T KOG0350|consen 319 VMSLCKTMKRVACLD--------NIIRQRQAPQPTVLSEL---LTKLGK-----------------------LYPPLWKL 364 (620)
T ss_pred HHHHhCCchhhcChh--------hhhhhcccCCchhhHHH---HhhcCC-----------------------cCchhHhh
Confidence 333333332322221 11111100001000000 000000 00011111
Q ss_pred hhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1302 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRK 1302 (2239)
+. .......|.|. ..|+
T Consensus 365 ~~--------satLsqdP~Kl------------------------------------------------------~~l~- 381 (620)
T KOG0350|consen 365 VF--------SATLSQDPSKL------------------------------------------------------KDLT- 381 (620)
T ss_pred hc--------chhhhcChHHH------------------------------------------------------hhhh-
Confidence 11 11111111110 0000
Q ss_pred HcCCCCCCCCC---------ccccchhhHhhcc-cHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHH----HcCC
Q 000101 1303 TCNHPLLNYPY---------FSDLSKDFLVKSC-GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQL 1368 (2239)
Q Consensus 1303 iCnHP~L~~p~---------~~~~s~d~Li~~S-GKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~----~rGi 1368 (2239)
.++|-++... ...+....++... -|-..+..++.. .+..++|+|++..+....|...|. ...+
T Consensus 382 -l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 382 -LHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred -cCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 0111111000 0000000011111 133334444443 347899999999888877777776 3456
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceE
Q 000101 1369 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1369 ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV 1446 (2239)
++-.++|..+.+.|.+++.+|+.++.. +|||++++++|+|+.++|.||+||+|-.-..|+||+||+.|.||...+
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a 533 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYA 533 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceE
Confidence 666799999999999999999986655 799999999999999999999999999999999999999999998664
No 63
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=1.9e-22 Score=206.13 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
|+++++|+..|.+.+|.+||.++.+|+.+|++.++||||++ |++||||.+|+.||++++|.++.+|..||+|||.||+.
T Consensus 2 ~~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~i-Ik~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 2 KKRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKI-ILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred hHHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHH-cCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH
Q 000101 2019 FYGFSHEVRSEARKVHDLFFDL 2040 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~~ 2040 (2239)
||+++|+||.+|+.|+++|.++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999874
No 64
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=2.9e-21 Score=225.46 Aligned_cols=313 Identities=19% Similarity=0.221 Sum_probs=222.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa--Psl 1076 (2239)
+-.|.|..++..++. +..||=|.-||+|||..+...|...+...+..--.||++|+. +..|..+.|.-.. -++
T Consensus 29 ~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 566899999999987 889999999999999998888887776555555679999998 6666666666543 367
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh-h-----cccCCceEEEecccccccChhh--HHHHHhhccc
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS-K-----LSKVDWKYIIIDEAQRMKDRES--VLARDLDRYR 1148 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s-~-----L~kikWd~VIIDEAHrIKN~~S--KlskaLk~Lk 1148 (2239)
++.+++|+.+.-.+.. ....++||||+|++.+..... . +...+..++|+|||+++.+... .+.-...-++
T Consensus 105 K~~vivGG~d~i~qa~--~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP 182 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAA--ILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLP 182 (442)
T ss_pred eEEEEEccHHHhhhhh--hcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCC
Confidence 8888888876554432 344588999999999865432 1 2223568999999999976422 2222222344
Q ss_pred cc-eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1149 CQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1149 a~-rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
.. .-++|||| +.+++.+| |..|+..... |
T Consensus 183 ~~RQtLlfSAT-itd~i~ql---------------------~~~~i~k~~a---------------------------~- 212 (442)
T KOG0340|consen 183 KPRQTLLFSAT-ITDTIKQL---------------------FGCPITKSIA---------------------------F- 212 (442)
T ss_pred CccceEEEEee-hhhHHHHh---------------------hcCCcccccc---------------------------e-
Confidence 44 46889999 22322222 2222111000 0
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
.++. .+ -.+.-..||.
T Consensus 213 ------~~e~-~~----------~vstvetL~q----------------------------------------------- 228 (442)
T KOG0340|consen 213 ------ELEV-ID----------GVSTVETLYQ----------------------------------------------- 228 (442)
T ss_pred ------EEec-cC----------CCCchhhhhh-----------------------------------------------
Confidence 0000 00 0000001111
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHh-cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLka-tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL 1386 (2239)
...++...+|-..|..+|..+.. ....++||.+.+..+.+|...|+..++....||+-|++.+|...+
T Consensus 229 -----------~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aL 297 (442)
T KOG0340|consen 229 -----------GYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAAL 297 (442)
T ss_pred -----------heeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHH
Confidence 00112223466667777777765 567899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceE
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV 1446 (2239)
.+|+++... +||+|+++++|||+++++.||+||.|-+|..|+||.||+.|.|.....
T Consensus 298 srFrs~~~~---iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~a 354 (442)
T KOG0340|consen 298 SRFRSNAAR---ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMA 354 (442)
T ss_pred HHHhhcCcc---EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcce
Confidence 999975554 799999999999999999999999999999999999999999988653
No 65
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.3e-20 Score=226.42 Aligned_cols=308 Identities=19% Similarity=0.269 Sum_probs=209.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC---CCeEEEechH-HHHHHHH---HHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY---GPHLIIVPNA-VLVNWKS---ELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~---GP~LIVVP~S-LLsQW~~---Ef~Kw 1072 (2239)
...|.|...+.-.+. +..-+-|..||+|||..++..++..+-+++.. -++||+||+. |.-|... .+..|
T Consensus 203 ~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 455778887765543 44446678899999999998887766555433 3689999998 5455444 44455
Q ss_pred CCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccCh--hhHHHHHhhcc
Q 000101 1073 LPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY 1147 (2239)
Q Consensus 1073 aPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN~--~SKlskaLk~L 1147 (2239)
+ .+.+++..|+-+.+.+- ......++|||.|++.|+.+... |.-....++|+|||+||... ...+...+...
T Consensus 279 t-~I~~~L~vGGL~lk~QE--~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lc 355 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQE--AVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLC 355 (691)
T ss_pred c-cceeeeeecCccHHHHH--HHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhc
Confidence 4 48888899988776543 34556899999999999987543 33446788999999999653 33344444333
Q ss_pred cc-ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1148 RC-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1148 ka-~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
.. ..-+|+|||- ...+.||.+| - +++|+...
T Consensus 356 pk~RQTmLFSATM-teeVkdL~sl---S--------------L~kPvrif------------------------------ 387 (691)
T KOG0338|consen 356 PKNRQTMLFSATM-TEEVKDLASL---S--------------LNKPVRIF------------------------------ 387 (691)
T ss_pred cccccceeehhhh-HHHHHHHHHh---h--------------cCCCeEEE------------------------------
Confidence 22 2358889982 2233333221 0 11111110
Q ss_pred HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000101 1227 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1306 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnH 1306 (2239)
+.-+ ... ...|..-+.++|
T Consensus 388 ----------------------vd~~--~~~--------------------------------a~~LtQEFiRIR----- 406 (691)
T KOG0338|consen 388 ----------------------VDPN--KDT--------------------------------APKLTQEFIRIR----- 406 (691)
T ss_pred ----------------------eCCc--ccc--------------------------------chhhhHHHheec-----
Confidence 0000 000 000000000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000101 1307 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1307 P~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL 1386 (2239)
+. +.--+-.+|..++..+. ..++|||++....+..|.-.|...|+++..|||+.++.+|.+.+
T Consensus 407 -----~~----------re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL 469 (691)
T KOG0338|consen 407 -----PK----------REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESL 469 (691)
T ss_pred -----cc----------cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHH
Confidence 00 00012333444444444 56899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCc
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQk 1443 (2239)
+.|+....+ |||+|+++++|||+..+-+||+|+.|-....|+||+||+.|.|..
T Consensus 470 ~kFk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRa 523 (691)
T KOG0338|consen 470 EKFKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRA 523 (691)
T ss_pred HHHHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccC
Confidence 999976666 799999999999999999999999999999999999999999965
No 66
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.86 E-value=6.7e-21 Score=229.91 Aligned_cols=339 Identities=20% Similarity=0.234 Sum_probs=224.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh--------CCCCC-eEEEechH-HHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK--------GNYGP-HLIIVPNA-VLVNWKSEL 1069 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k--------~~~GP-~LIVVP~S-LLsQW~~Ef 1069 (2239)
.--|.|..++--++. +.+.|...|+|+|||..++..|...+... ...|| .+|++|+. |..|...|-
T Consensus 267 eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 455788888875554 67789999999999988777665544322 22344 57888998 667788888
Q ss_pred HHHCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHH
Q 000101 1070 HKWLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARD 1143 (2239)
Q Consensus 1070 ~KwaP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlska 1143 (2239)
.+|+. ++.++..+|+..--.+-+ ......+|+|.|++.|.... -.|......|||+|||++|.. +.-...+.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~f--qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~i 420 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGF--QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKI 420 (673)
T ss_pred HHhcccccceEEEEecccchhhhhh--hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHH
Confidence 88874 466777777654322222 22347789999999998654 345556789999999999954 22333333
Q ss_pred hhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 000101 1144 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1223 (2239)
Q Consensus 1144 Lk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklL 1223 (2239)
|..++ ..|- ..+.+..... .++.+.+
T Consensus 421 L~~mP-----------ssn~-------------------------------------k~~tde~~~~------~~~~~~~ 446 (673)
T KOG0333|consen 421 LEQMP-----------SSNA-------------------------------------KPDTDEKEGE------ERVRKNF 446 (673)
T ss_pred HHhCC-----------cccc-------------------------------------CCCccchhhH------HHHHhhc
Confidence 33321 1110 0000000000 1111111
Q ss_pred hhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000101 1224 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1303 (2239)
Q Consensus 1224 rPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKi 1303 (2239)
.-. | --.........|++.-..|-+.+........... ..
T Consensus 447 ---~~~--k-------~yrqT~mftatm~p~verlar~ylr~pv~vtig~-----~g----------------------- 486 (673)
T KOG0333|consen 447 ---SSS--K-------KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGS-----AG----------------------- 486 (673)
T ss_pred ---ccc--c-------ceeEEEEEecCCChHHHHHHHHHhhCCeEEEecc-----CC-----------------------
Confidence 000 0 0012233445566655555444433221110000 00
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000101 1304 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1304 CnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRq 1383 (2239)
-++|.+.. .-+.+..+.|+..|..||... ....+|||.+....+|.|++.|...||.+++|||+-++++|+
T Consensus 487 k~~~rveQ-------~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe 557 (673)
T KOG0333|consen 487 KPTPRVEQ-------KVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRE 557 (673)
T ss_pred CCccchhe-------EEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHH
Confidence 01111100 011244566888899988875 357899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.+|..|+.+..+ ||++|+++|+|||++++.+||+||..-+...|.|||||++|.|+...+.-|+
T Consensus 558 ~aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSfl 621 (673)
T KOG0333|consen 558 NALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFL 621 (673)
T ss_pred HHHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEe
Confidence 999999987777 8999999999999999999999999999999999999999999887665443
No 67
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=5.8e-21 Score=228.31 Aligned_cols=332 Identities=21% Similarity=0.347 Sum_probs=227.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--s 1075 (2239)
..|||||.+.|..|.-.- .-..||+...+|.|||+..+..++... +.+||+|-.+ -+.||...|..|.. .
T Consensus 301 t~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~tik------K~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAACTIK------KSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeeeeec------ccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 379999999999886411 124589999999999998877665432 4789999877 48999999999974 3
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh----------hhhcccCCceEEEecccccccChhhHHHHHhh
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1145 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD----------~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk 1145 (2239)
..++.+.....++ ...+..|+||||.++..- ..+|....|.++|+||.|-+- ..-..+.|.
T Consensus 374 ~~i~rFTsd~Ke~-------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP--A~MFRRVls 444 (776)
T KOG1123|consen 374 DQICRFTSDAKER-------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP--AKMFRRVLS 444 (776)
T ss_pred cceEEeecccccc-------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch--HHHHHHHHH
Confidence 3444554443332 335678999999998532 456888899999999999983 333444455
Q ss_pred ccccceEEEecCCCCCCCHHHHHHHHhhh-cCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000101 1146 RYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1224 (2239)
Q Consensus 1146 ~Lka~rRLLLTGTPIQNnL~ELwsLLnFL-lP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLr 1224 (2239)
-..++..|+||||-+..+ |-..=|||| .|.++. ..|.+-..
T Consensus 445 iv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE-----------------------AnWmdL~~------------- 486 (776)
T KOG1123|consen 445 IVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE-----------------------ANWMDLQK------------- 486 (776)
T ss_pred HHHHHhhccceeEEeecc--ccccccceeecchhhh-----------------------ccHHHHHh-------------
Confidence 567888999999977654 112223554 333321 01111000
Q ss_pred hHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000101 1225 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1304 (2239)
Q Consensus 1225 PFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiC 1304 (2239)
...+..-....|+|+||+.-...|-..... +.+ |-
T Consensus 487 -----------kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~-------------------------kr~------lL--- 521 (776)
T KOG1123|consen 487 -----------KGHIAKVQCAEVWCPMTPEFYREYLRENTR-------------------------KRM------LL--- 521 (776)
T ss_pred -----------CCceeEEeeeeeecCCCHHHHHHHHhhhhh-------------------------hhh------ee---
Confidence 012333445678999998765544321110 000 00
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000101 1305 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1305 nHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqe 1384 (2239)
| +-...||....-++......|.|+|||+..+-.+ .+|-...|-+| |.|.|++.+|.+
T Consensus 522 ---y--------------vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfAL---k~YAikl~Kpf--IYG~Tsq~ERm~ 579 (776)
T KOG1123|consen 522 ---Y--------------VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFAL---KEYAIKLGKPF--IYGPTSQNERMK 579 (776)
T ss_pred ---e--------------ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHH---HHHHHHcCCce--EECCCchhHHHH
Confidence 0 1112388888888888888999999999766544 44444445555 789999999999
Q ss_pred HHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCC-CcchHHHhhhhhcccCCcce----EEEEEEeh
Q 000101 1385 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKRE----VKVIYMEA 1453 (2239)
Q Consensus 1385 iL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW-NP~~dlQAiGRAhRIGQkKe----V~VyrLva 1453 (2239)
+++.|+- +..+..|.|| ++|...+||+.|+++|...+.. +-.++.||.||+.|.-.... +..|-|++
T Consensus 580 ILqnFq~-n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS 651 (776)
T KOG1123|consen 580 ILQNFQT-NPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVS 651 (776)
T ss_pred HHHhccc-CCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeee
Confidence 9999986 5666666666 9999999999999999998885 66789999999999863322 45555554
No 68
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.1e-20 Score=231.21 Aligned_cols=312 Identities=21% Similarity=0.271 Sum_probs=213.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----------CCCCeEEEechH-HHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----------NYGPHLIIVPNA-VLVNWKSE 1068 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~----------~~GP~LIVVP~S-LLsQW~~E 1068 (2239)
...|+|+.++.-+.. +.+.+.|..||+|||..++..+...+...+ .....||++|++ |+.|..+|
T Consensus 96 ~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred CCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 677999999876665 777899999999999999987654443222 235679999988 88999999
Q ss_pred HHHHCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC---hhhHHH
Q 000101 1069 LHKWLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD---RESVLA 1141 (2239)
Q Consensus 1069 f~KwaP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN---~~SKls 1141 (2239)
..++.- .+++++.+|..+.+.+.. ......+|+|+|++.|.... ..+..-...|+|||||++|.. +.-.+.
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q~~--~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir 249 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQLR--FIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIR 249 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhhhh--hhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHH
Confidence 999974 455555556555554443 33458899999999997653 334444566999999999965 223344
Q ss_pred HHhhcc-----ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHH
Q 000101 1142 RDLDRY-----RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 1216 (2239)
Q Consensus 1142 kaLk~L-----ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii 1216 (2239)
+.+... ....-+++|||= .-.
T Consensus 250 ~iv~~~~~~~~~~~qt~mFSAtf-p~~----------------------------------------------------- 275 (482)
T KOG0335|consen 250 KIVEQLGMPPKNNRQTLLFSATF-PKE----------------------------------------------------- 275 (482)
T ss_pred HHhcccCCCCccceeEEEEeccC-Chh-----------------------------------------------------
Confidence 444332 123345556661 000
Q ss_pred HHHHHhhhhHHhhH----hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHH
Q 000101 1217 HRLHQILEPFMLRR----RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1292 (2239)
Q Consensus 1217 ~RLhklLrPFmLRR----lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ks 1292 (2239)
+..+...|+.-. ....|..........+++|.
T Consensus 276 --iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~------------------------------------------ 311 (482)
T KOG0335|consen 276 --IQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN------------------------------------------ 311 (482)
T ss_pred --hhhhHHHHhhccceEEEEeeeccccccceeEeeeec------------------------------------------
Confidence 001111111100 00000111111112222221
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHh-------cCCeEEEEEccHHHHHHHHHHHHH
Q 000101 1293 LNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-------TGHRVLLFSTMTKLLDILEEYLQW 1365 (2239)
Q Consensus 1293 L~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLka-------tGhKVLIFSQ~t~~LDILed~L~~ 1365 (2239)
...|...|..+|..... ..++++||+.....++.|+.+|..
T Consensus 312 --------------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~ 359 (482)
T KOG0335|consen 312 --------------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS 359 (482)
T ss_pred --------------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc
Confidence 11222233333332220 135899999999999999999999
Q ss_pred cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcce
Q 000101 1366 RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1445 (2239)
Q Consensus 1366 rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKe 1445 (2239)
.++++..|||.-+..+|.+.|+.|..+... +||+|.++++|||++.+++||+||.|-+-..|+|||||++|.|...-
T Consensus 360 ~~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~ 436 (482)
T KOG0335|consen 360 NGYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGR 436 (482)
T ss_pred CCCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCce
Confidence 999999999999999999999999976555 79999999999999999999999999999999999999999999977
Q ss_pred EEEEE
Q 000101 1446 VKVIY 1450 (2239)
Q Consensus 1446 V~Vyr 1450 (2239)
++.|.
T Consensus 437 atsf~ 441 (482)
T KOG0335|consen 437 ATSFF 441 (482)
T ss_pred eEEEe
Confidence 66664
No 69
>PRK02362 ski2-like helicase; Provisional
Probab=99.85 E-value=1e-19 Score=239.91 Aligned_cols=316 Identities=19% Similarity=0.134 Sum_probs=199.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slk 1077 (2239)
+|+|+|.+++.-+ +..+.|.|++..||+|||+++...+...+. ..+.+|||+|.. |+.++..+|.++.+ +++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999753 335778999999999999998766655543 346899999976 88899999988754 677
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccCh--hhHHHHHhhcc----cc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY----RC 1149 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN~--~SKlskaLk~L----ka 1149 (2239)
+..+.|....... .....+|+|+|++.+...... ..-...++|||||+|.+.+. ...+-..+..+ ..
T Consensus 97 v~~~tGd~~~~~~-----~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~ 171 (737)
T PRK02362 97 VGISTGDYDSRDE-----WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPD 171 (737)
T ss_pred EEEEeCCcCcccc-----ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCC
Confidence 8888886543322 124679999999987543221 11125699999999999653 22222223322 33
Q ss_pred ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhh
Q 000101 1150 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1229 (2239)
Q Consensus 1150 ~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLR 1229 (2239)
.+.++||||.- +..++. +|+...+... ..+|.-+
T Consensus 172 ~qii~lSATl~--n~~~la------------------~wl~~~~~~~-------------------------~~rpv~l- 205 (737)
T PRK02362 172 LQVVALSATIG--NADELA------------------DWLDAELVDS-------------------------EWRPIDL- 205 (737)
T ss_pred CcEEEEcccCC--CHHHHH------------------HHhCCCcccC-------------------------CCCCCCC-
Confidence 46789999952 334443 3332110000 0011000
Q ss_pred HhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
...++.. . .+ .... ... .+
T Consensus 206 --------------~~~v~~~-~----~~----------~~~~--~~~------------------------------~~ 224 (737)
T PRK02362 206 --------------REGVFYG-G----AI----------HFDD--SQR------------------------------EV 224 (737)
T ss_pred --------------eeeEecC-C----ee----------cccc--ccc------------------------------cC
Confidence 0000000 0 00 0000 000 00
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-----------------------
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR----------------------- 1366 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r----------------------- 1366 (2239)
....+...+ .++......++++||||..+..+..++..|...
T Consensus 225 --------------~~~~~~~~~-~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (737)
T PRK02362 225 --------------EVPSKDDTL-NLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREV 289 (737)
T ss_pred --------------CCccchHHH-HHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 000011111 112222346789999999988877766666432
Q ss_pred -------------CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE----cC-----CC
Q 000101 1367 -------------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-----PD 1424 (2239)
Q Consensus 1367 -------------Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi----fD-----pp 1424 (2239)
...+..+||+++.++|..+.+.|+++... +|++|++++.|||+++.++||. || .|
T Consensus 290 ~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~ 366 (737)
T PRK02362 290 SDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP 366 (737)
T ss_pred cCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCcee
Confidence 12456789999999999999999975433 7999999999999999988886 77 57
Q ss_pred CCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1425 PNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1425 WNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
.+...|.|++|||+|.|....-.++.+
T Consensus 367 ~s~~~y~Qm~GRAGR~g~d~~G~~ii~ 393 (737)
T PRK02362 367 IPVLEYHQMAGRAGRPGLDPYGEAVLL 393 (737)
T ss_pred CCHHHHHHHhhcCCCCCCCCCceEEEE
Confidence 788999999999999998744333333
No 70
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=1.7e-21 Score=200.17 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
+.+.|+++|+.|...+|++||.+++.|+.+|+|+++||||++ |++||||.+|.+||++ |.++.+|..||.|||+||+
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~i-I~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~ 78 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKI-IKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHH-hcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999 9999999999999998 9999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLK 2042 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k 2042 (2239)
.||+++|.+|.+|..|+++|.+++.
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998775
No 71
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.3e-20 Score=214.25 Aligned_cols=304 Identities=18% Similarity=0.230 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CCceE
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SVSCI 1079 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--slkvv 1079 (2239)
..|..++..++. +.+.|.-..-|+|||.++..-++.........-.+||+.|+. |..|....+..... ++.+.
T Consensus 52 ~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 52 AIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 357788877776 888899999999999875443333333233334689999988 67787777777764 45666
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccC--hhhHHHHHhhccc-cceEEE
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQRRLL 1154 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~rRLL 1154 (2239)
.+.|++..-..+.. .. .+-+||..|++++.+. +..|.-....++|+|||+.|.| ....++...+.++ ....++
T Consensus 128 acigg~n~gedikk-ld-~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~ 205 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKK-LD-YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVL 205 (400)
T ss_pred EEecCCccchhhhh-hc-ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEE
Confidence 67777654333221 22 4668999999999765 4567777899999999999965 5667788888776 456788
Q ss_pred ecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhh
Q 000101 1155 LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1234 (2239)
Q Consensus 1155 LTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkD 1234 (2239)
+|||- ..|+..+.++..
T Consensus 206 ~SATl----p~eilemt~kfm----------------------------------------------------------- 222 (400)
T KOG0328|consen 206 VSATL----PHEILEMTEKFM----------------------------------------------------------- 222 (400)
T ss_pred EeccC----cHHHHHHHHHhc-----------------------------------------------------------
Confidence 89993 223333222222
Q ss_pred hhcCCCCceEEEEE-eccCHHH-HHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000101 1235 VEGSLPPKVSIVLR-CRMSAIQ-SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1312 (2239)
Q Consensus 1235 VekdLP~K~e~VV~-c~MS~~Q-r~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p 1312 (2239)
|+.+...++ -+++.+- +.+|-.+ + .
T Consensus 223 -----tdpvrilvkrdeltlEgIKqf~v~v--------e--~-------------------------------------- 249 (400)
T KOG0328|consen 223 -----TDPVRILVKRDELTLEGIKQFFVAV--------E--K-------------------------------------- 249 (400)
T ss_pred -----CCceeEEEecCCCchhhhhhheeee--------c--h--------------------------------------
Confidence 222222211 1111110 0011000 0 0
Q ss_pred CccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcC
Q 000101 1313 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1392 (2239)
Q Consensus 1313 ~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ 1392 (2239)
..=|+..|..+-..|. =..++|||+.....|+|.+.++...+.+..+||.|+.++|.+++.+|+++
T Consensus 250 ------------EewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg 315 (400)
T KOG0328|consen 250 ------------EEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG 315 (400)
T ss_pred ------------hhhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC
Confidence 0004445554444432 34689999999999999999999999999999999999999999999998
Q ss_pred CCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcce
Q 000101 1393 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1445 (2239)
Q Consensus 1393 ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKe 1445 (2239)
.+. +|++|++-++|+|+|.++.||+||.|-|+..|+|||||.+|.|.+.-
T Consensus 316 ~Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGv 365 (400)
T KOG0328|consen 316 KSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV 365 (400)
T ss_pred Cce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcce
Confidence 777 89999999999999999999999999999999999999999997654
No 72
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.6e-21 Score=197.71 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
+++.|++||+.|...+|.+||.++..|+++|++.++||||.+ |++||||.+|++||++++|.++.+|..||+|||.||+
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~i-Ik~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVI-IKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDL 2040 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~ 2040 (2239)
.||+++|.+|.+|+.|+++|.++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 73
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.84 E-value=2.8e-19 Score=216.47 Aligned_cols=295 Identities=16% Similarity=0.181 Sum_probs=185.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecchhhH-----------H
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQR-----------S 1089 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gskd~R-----------k 1089 (2239)
.++..+||+|||.+++.++...+. ....+++|+|+|.. ++.++...+..++.. .+..++|..... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~-~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIK-SQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-hCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 478899999999999998887764 34567899999966 888999999998764 344444432210 1
Q ss_pred HHHHHH-----hhcCccEEEEehhHHHHhhhh--------cccCCceEEEecccccccChhh-HHHHHhhccc--cceEE
Q 000101 1090 RLFSQV-----AALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKDRES-VLARDLDRYR--CQRRL 1153 (2239)
Q Consensus 1090 ~l~~~i-----~~~kfdVVITTYE~L~kD~s~--------L~kikWd~VIIDEAHrIKN~~S-KlskaLk~Lk--a~rRL 1153 (2239)
...... .....+|+|||++.+...... +..+...+|||||+|.+..... .+...+..+. ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 111111 112467999999998754322 1223347999999999965322 2333333332 23578
Q ss_pred EecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHh
Q 000101 1154 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1233 (2239)
Q Consensus 1154 LLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKk 1233 (2239)
++|||+- ..+. .|...+.....
T Consensus 160 ~~SATlp----~~l~---------------~~~~~~~~~~~--------------------------------------- 181 (358)
T TIGR01587 160 LMSATLP----KFLK---------------EYAEKIGYVEF--------------------------------------- 181 (358)
T ss_pred EEecCch----HHHH---------------HHHhcCCCccc---------------------------------------
Confidence 8999951 1110 11000000000
Q ss_pred hhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 000101 1234 DVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY 1313 (2239)
Q Consensus 1234 DVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~ 1313 (2239)
....+..... ....|++....
T Consensus 182 --~~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~- 202 (358)
T TIGR01587 182 --NEPLDLKEER--------------------------------------------------------RFERHRFIKIE- 202 (358)
T ss_pred --ccCCCCcccc--------------------------------------------------------ccccccceeec-
Confidence 0000000000 00000000000
Q ss_pred ccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCC--eEEeecCCCCHHHHHHH----HH
Q 000101 1314 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRESA----IV 1387 (2239)
Q Consensus 1314 ~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGi--ky~RLDGsts~eeRqei----L~ 1387 (2239)
.....|...+..++..+ ..+.++||||+....++.+...|...+. .+..+||.++..+|.+. ++
T Consensus 203 ---------~~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~ 272 (358)
T TIGR01587 203 ---------SDKVGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLE 272 (358)
T ss_pred ---------cccccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHH
Confidence 00012444555555333 3578999999999999999999988776 48899999999999764 88
Q ss_pred HHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcc----eEEEEEE
Q 000101 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR----EVKVIYM 1451 (2239)
Q Consensus 1388 ~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkK----eV~VyrL 1451 (2239)
.|.++.. .+|+||+++++|||+ .+|+||+++.+ +..++||+||++|.|.+. .|.||+.
T Consensus 273 ~f~~~~~---~ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 273 EMKKNEK---FVIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred HhcCCCC---eEEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 9986433 379999999999999 58999998876 789999999999999763 3555544
No 74
>PRK01172 ski2-like helicase; Provisional
Probab=99.84 E-value=5.2e-19 Score=231.37 Aligned_cols=304 Identities=20% Similarity=0.185 Sum_probs=193.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SV 1076 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-sl 1076 (2239)
.+|+|+|.+++..+. .+.+.|++.+||+|||+++...+...+.. .+.+|+|+|.. |+.++.++|.+|.. ++
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 369999999998764 37789999999999999987766655432 35789999976 77889999988753 46
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhc---cc-
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR---YR- 1148 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~---Lk- 1148 (2239)
.+..+.|........ ....+|+|+|++.+..... ...-.++++|||||+|.+.+. ...+...+.. +.
T Consensus 94 ~v~~~~G~~~~~~~~-----~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~ 168 (674)
T PRK01172 94 RVKISIGDYDDPPDF-----IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNP 168 (674)
T ss_pred eEEEEeCCCCCChhh-----hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCc
Confidence 666677764432221 2367999999997653321 111235789999999999642 2222222222 22
Q ss_pred cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1149 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1149 a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
..+.++||||.- +. ..|.+|+....... ..+|
T Consensus 169 ~~riI~lSATl~--n~------------------~~la~wl~~~~~~~-------------------------~~r~--- 200 (674)
T PRK01172 169 DARILALSATVS--NA------------------NELAQWLNASLIKS-------------------------NFRP--- 200 (674)
T ss_pred CCcEEEEeCccC--CH------------------HHHHHHhCCCccCC-------------------------CCCC---
Confidence 345788999952 22 33444443221000 0000
Q ss_pred hHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1229 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1229 RRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
.|-. ..+++.. .+| .+.. ..
T Consensus 201 ----------vpl~-~~i~~~~------~~~----------~~~~-~~-------------------------------- 220 (674)
T PRK01172 201 ----------VPLK-LGILYRK------RLI----------LDGY-ER-------------------------------- 220 (674)
T ss_pred ----------CCeE-EEEEecC------eee----------eccc-cc--------------------------------
Confidence 1100 0111100 000 0000 00
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc----------------------
Q 000101 1309 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR---------------------- 1366 (2239)
Q Consensus 1309 L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r---------------------- 1366 (2239)
.+. .+..++.+....++++||||..+..++.+...|...
T Consensus 221 ------------------~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~ 281 (674)
T PRK01172 221 ------------------SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLN 281 (674)
T ss_pred ------------------ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHH
Confidence 000 012233444456789999999988877777766432
Q ss_pred ---CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCC---------CCCcchHHHhh
Q 000101 1367 ---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP---------DPNPKNEEQAV 1434 (2239)
Q Consensus 1367 ---Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDp---------pWNP~~dlQAi 1434 (2239)
...+..+||+++.++|..+.+.|+++... +|++|++++.|||+++ .+||++|. ++++..+.|++
T Consensus 282 ~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~---VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~ 357 (674)
T PRK01172 282 EMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIK---VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMI 357 (674)
T ss_pred HHHhcCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHh
Confidence 01355689999999999999999964433 7999999999999996 57787764 35677899999
Q ss_pred hhhcccCCcce
Q 000101 1435 ARAHRIGQKRE 1445 (2239)
Q Consensus 1435 GRAhRIGQkKe 1445 (2239)
|||+|.|....
T Consensus 358 GRAGR~g~d~~ 368 (674)
T PRK01172 358 GRAGRPGYDQY 368 (674)
T ss_pred hcCCCCCCCCc
Confidence 99999996554
No 75
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.83 E-value=7.5e-21 Score=194.50 Aligned_cols=98 Identities=16% Similarity=0.263 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000101 1942 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2021 (2239)
Q Consensus 1942 ck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~ 2021 (2239)
.-.|+..|.+.+|++||.++..|+.+|++.++||||++ |++||||.+|..||++++|.++.+|..||.|||.||+.||+
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQE-IKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34788889999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 000101 2022 FSHEVRSEARKVHDLFFDL 2040 (2239)
Q Consensus 2022 ~~sev~~dA~~L~~~f~~~ 2040 (2239)
++|.+|.+|+.|+++|..+
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 76
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.83 E-value=3.6e-19 Score=231.96 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=86.1
Q ss_pred hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHH-----HHHHHHhc----CC----CCccEEEEeccccc
Q 000101 1341 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE-----SAIVDFNS----HD----SDCFIFLLSIRAAG 1407 (2239)
Q Consensus 1341 atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRq-----eiL~~FNs----~d----s~~~VfLLSTrAGG 1407 (2239)
..+.++||||+.+..++.|...|...++ ..|||.++..+|. .++++|.. +. ..-..|||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4567999999999999999999998887 8899999999999 78999975 21 01135799999999
Q ss_pred cccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceE
Q 000101 1408 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1408 eGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV 1446 (2239)
+|||+.. |+||+++.|+ ..|+||+||++|.|.....
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCc
Confidence 9999985 9999988775 7899999999999986443
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.83 E-value=4e-18 Score=220.56 Aligned_cols=413 Identities=15% Similarity=0.181 Sum_probs=238.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
.|+|||...+..++. +.|+|+...||.|||++++..+. +.... ...++||+|+. |..+|..++..++. ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~-l~aL~--g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLY-LNALT--GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHH-HHhhc--CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 478888777765553 34579999999999999877643 22222 23689999988 77777777766543 44
Q ss_pred ceEEEecc-hh--hHHHHHHHHhhcCccEEEEehhHHHHh--hh-------hcccCCceEEEecccccccChhhHHHHHh
Q 000101 1077 SCIYYVGA-KD--QRSRLFSQVAALKFNVLVTTYEFIMYD--RS-------KLSKVDWKYIIIDEAQRMKDRESVLARDL 1144 (2239)
Q Consensus 1077 kvvvy~Gs-kd--~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s-------~L~kikWd~VIIDEAHrIKN~~SKlskaL 1144 (2239)
.+.+..+. .. ...... ......+|+++|++.|..+ +. .+....+.++||||||.|.-..
T Consensus 141 sv~~~~~~s~~~~~~~~~r--r~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe------- 211 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEK--RKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS------- 211 (762)
T ss_pred cEEEEECCCCccccCHHHH--HHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc-------
Confidence 55443332 11 111111 1224689999999999533 11 1223467899999999984221
Q ss_pred hccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCC-----------------h-HHHHhhhcCCcccCCCCCCCChhh
Q 000101 1145 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN-----------------R-KAFHDWFSQPFQKEGPTHNADDDW 1206 (2239)
Q Consensus 1145 k~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s-----------------~-k~F~e~F~kPf~~~g~~~~~e~d~ 1206 (2239)
+..-|++||.|-.. ..+|..++-+-..+-.. . ..-.+.|..+ +
T Consensus 212 ----artpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~--------~----- 272 (762)
T TIGR03714 212 ----AQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID--------N----- 272 (762)
T ss_pred ----CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC--------c-----
Confidence 23458888877533 45676664332221110 0 0111111100 0
Q ss_pred HHHHHHHHHHHHHHHhhhh-HHhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHHh-
Q 000101 1207 LETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR- 1277 (2239)
Q Consensus 1207 l~~ee~~lii~RLhklLrP-FmLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek~- 1277 (2239)
+.........+.+...|+. +++.+-+.-+.. +....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 273 l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~---~~~v~ivD-~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a 348 (762)
T TIGR03714 273 LYSEEYFELVRHINLALRAHYLFKRNKDYVVT---NGEVVLLD-RITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMA 348 (762)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeee
Confidence 0001111223344444444 234443333322 12222221 122 2344455555443333322211000
Q ss_pred -----hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhcCCeEE
Q 000101 1278 -----RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRVL 1347 (2239)
Q Consensus 1278 -----~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~-----s~d~Li~~SGKLelLdrIL~kLkatGhKVL 1347 (2239)
...+......+........-.+|.++-+-+.+..|..... ..........|+..+...+..+...+..||
T Consensus 349 ~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvL 428 (762)
T TIGR03714 349 SITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVL 428 (762)
T ss_pred eeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEE
Confidence 0000000000000001112345566665555544432211 111223345688889888888888899999
Q ss_pred EEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCC---------cCceE
Q 000101 1348 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ---------SADTV 1418 (2239)
Q Consensus 1348 IFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLq---------aADtV 1418 (2239)
|||..+...+.|...|...|+++..|+|.+...+|..+...|+. + -|+|+|+.+|+|+|+. ..++|
T Consensus 429 Ift~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~--g---~VlIATdmAgRGtDI~l~~~v~~~GGL~vI 503 (762)
T TIGR03714 429 LITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK--G---AVTVATSMAGRGTDIKLGKGVAELGGLAVI 503 (762)
T ss_pred EEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC--C---eEEEEccccccccCCCCCccccccCCeEEE
Confidence 99999999999999999999999999999998887776666653 2 3799999999999999 88999
Q ss_pred EEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1419 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1419 IifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
|.||++-+.. +.|+.||++|.|....+..| ++.++.+.
T Consensus 504 it~~~ps~ri-d~qr~GRtGRqG~~G~s~~~--is~eD~l~ 541 (762)
T TIGR03714 504 GTERMENSRV-DLQLRGRSGRQGDPGSSQFF--VSLEDDLI 541 (762)
T ss_pred EecCCCCcHH-HHHhhhcccCCCCceeEEEE--Eccchhhh
Confidence 9999997765 49999999999987665433 34455444
No 78
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.6e-20 Score=192.30 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
|+.+.++|++.|.+.+|++||.|+..|+++|+|.++||||++ |++||||.+|++||+.++|.++.+|..||.|||.||+
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~-I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 80 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQE-ISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAK 80 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHH-hCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 566889999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDL 2040 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~ 2040 (2239)
.||+++|.+|.+|+.|+++|...
T Consensus 81 ~yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 81 LYNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999863
No 79
>PRK00254 ski2-like helicase; Provisional
Probab=99.83 E-value=1.4e-18 Score=228.90 Aligned_cols=314 Identities=16% Similarity=0.107 Sum_probs=193.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slk 1077 (2239)
+|+|+|.+++.- .+..+.+.|++..||+|||+++...+...+.. ..+.+|+|+|.. |+.++..+|.+|.. ++.
T Consensus 23 ~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 23 ELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 799999999963 22347889999999999999996555443321 346899999976 78889998888753 567
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccC--hhhHHHHHhhccc-cceE
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQRR 1152 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~rR 1152 (2239)
+..+.|....... ....++|+|+|++.+...... ..-.++++|||||+|.+.+ ....+...+..+. ..+.
T Consensus 98 v~~~~Gd~~~~~~-----~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qi 172 (720)
T PRK00254 98 VAMTTGDYDSTDE-----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQI 172 (720)
T ss_pred EEEEeCCCCCchh-----hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcE
Confidence 7777776543322 124689999999987543211 1113578999999999954 3444555555553 3467
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhH
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1232 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlK 1232 (2239)
++||||.- +..++ .+|+....... ..+|.-+
T Consensus 173 I~lSATl~--n~~~l------------------a~wl~~~~~~~-------------------------~~rpv~l---- 203 (720)
T PRK00254 173 LGLSATVG--NAEEL------------------AEWLNAELVVS-------------------------DWRPVKL---- 203 (720)
T ss_pred EEEEccCC--CHHHH------------------HHHhCCccccC-------------------------CCCCCcc----
Confidence 88999952 23333 33332211000 0011000
Q ss_pred hhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000101 1233 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1312 (2239)
Q Consensus 1233 kDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p 1312 (2239)
. ..+... ......... .. ..
T Consensus 204 ---------~--~~~~~~---------------~~~~~~~~~-~~---~~------------------------------ 223 (720)
T PRK00254 204 ---------R--KGVFYQ---------------GFLFWEDGK-IE---RF------------------------------ 223 (720)
T ss_pred ---------e--eeEecC---------------CeeeccCcc-hh---cc------------------------------
Confidence 0 000000 000000000 00 00
Q ss_pred CccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH---------------------------
Q 000101 1313 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW--------------------------- 1365 (2239)
Q Consensus 1313 ~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~--------------------------- 1365 (2239)
...+..++.++...+.++||||..+..+..+...|..
T Consensus 224 ----------------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 224 ----------------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred ----------------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 0001112222333578899999888766554433321
Q ss_pred ------cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE-------cCCCC-CcchHH
Q 000101 1366 ------RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-------YDPDP-NPKNEE 1431 (2239)
Q Consensus 1366 ------rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi-------fDppW-NP~~dl 1431 (2239)
....+..+||+++.++|..+.+.|+++... +|++|++++.|||+++.++||. ++.++ ....+.
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~ 364 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQ 364 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHH
Confidence 123467799999999999999999975433 7999999999999999888884 33333 334789
Q ss_pred HhhhhhcccCCcceEEEEEE
Q 000101 1432 QAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1432 QAiGRAhRIGQkKeV~VyrL 1451 (2239)
|++|||+|.|....-.++.+
T Consensus 365 Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 365 QMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred HhhhccCCCCcCCCceEEEE
Confidence 99999999886544334433
No 80
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=1.7e-20 Score=215.97 Aligned_cols=312 Identities=21% Similarity=0.255 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-H---HHHHHHHHHHHCCCCce
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-V---LVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-L---LsQW~~Ef~KwaPslkv 1078 (2239)
|.|.+.+.-.+. +..-+.-.--|+|||-..+..++..+..+...-..+|+||+. | .+|.+.++.+++. +.+
T Consensus 110 PiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~-i~v 184 (459)
T KOG0326|consen 110 PIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLG-IKV 184 (459)
T ss_pred Cccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccC-eEE
Confidence 566666665554 333233366899999988888887776666666789999976 3 3568888888875 888
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhccccce-EE
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQR-RL 1153 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~r-RL 1153 (2239)
.+..|+...|..+... ....+++|.|++++..... .-.-.+..++|+|||+.+.. +...+.+.+.-++..+ .+
T Consensus 185 mvttGGT~lrDDI~Rl--~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQil 262 (459)
T KOG0326|consen 185 MVTTGGTSLRDDIMRL--NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQIL 262 (459)
T ss_pred EEecCCcccccceeee--cCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceee
Confidence 8888988877665422 3467899999999987633 22334678999999999975 3445566666665554 56
Q ss_pred EecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHh
Q 000101 1154 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1233 (2239)
Q Consensus 1154 LLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKk 1233 (2239)
+.|||= | -..+.|.+ |.+++
T Consensus 263 lySATF----------------P---~tVk~Fm~-----------------------------------------~~l~k 282 (459)
T KOG0326|consen 263 LYSATF----------------P---LTVKGFMD-----------------------------------------RHLKK 282 (459)
T ss_pred EEeccc----------------c---hhHHHHHH-----------------------------------------HhccC
Confidence 669981 0 11233332 22222
Q ss_pred hhhc----CCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1234 DVEG----SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1234 DVek----dLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
-.+- +|..+-. ..+|.
T Consensus 283 Py~INLM~eLtl~Gv-----------tQyYa------------------------------------------------- 302 (459)
T KOG0326|consen 283 PYEINLMEELTLKGV-----------TQYYA------------------------------------------------- 302 (459)
T ss_pred cceeehhhhhhhcch-----------hhhee-------------------------------------------------
Confidence 1100 0000000 00110
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHH
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1389 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~F 1389 (2239)
.+..+-|+.+|..++.++.- ...||||+.+...++|+..+...||.+..+|..|.++.|.+++.+|
T Consensus 303 ------------fV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdF 368 (459)
T KOG0326|consen 303 ------------FVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDF 368 (459)
T ss_pred ------------eechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhh
Confidence 12334578888888887753 3689999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhh
Q 000101 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1460 (2239)
Q Consensus 1390 Ns~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s 1460 (2239)
+. +.|+ .|++|+...+|||+|++++||+||.|-|+..|++|+||.+|.|.-. .-+.|++.+++..-
T Consensus 369 r~--G~cr-nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLityedrf~L 434 (459)
T KOG0326|consen 369 RN--GKCR-NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLITYEDRFNL 434 (459)
T ss_pred hc--cccc-eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEehhhhhhH
Confidence 96 4555 5888999999999999999999999999999999999999999653 34456666665443
No 81
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.82 E-value=4.9e-20 Score=215.50 Aligned_cols=311 Identities=25% Similarity=0.334 Sum_probs=212.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHH-HHH------hCCCCCe-EEEechH-HHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL-MEF------KGNYGPH-LIIVPNA-VLVNWKSELH 1070 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~L-ie~------k~~~GP~-LIVVP~S-LLsQW~~Ef~ 1070 (2239)
...|.|+.|+.-+++ +..-|--.-||+|||+.+...+..+ ++. ....||+ |||||.. |..|...-+.
T Consensus 192 ~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 345678888877765 4444544559999998876644332 221 2344665 9999988 5555544444
Q ss_pred HH--------CCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhh
Q 000101 1071 KW--------LPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RES 1138 (2239)
Q Consensus 1071 Kw--------aPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~S 1138 (2239)
.| +|.++..++.|+-+.+.++- ....+.+|+|.|+++++.-. ..+.-.-..|+.+|||+||.+ +..
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~--~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEd 345 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLD--VVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFED 345 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHH--HHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchh
Confidence 44 37788888999888776653 34458899999999998653 334444578999999999954 445
Q ss_pred HHHHHhhccccce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000101 1139 VLARDLDRYRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1217 (2239)
Q Consensus 1139 KlskaLk~Lka~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~ 1217 (2239)
.+...+..|+.++ -||+|||- |.-. ..|..
T Consensus 346 dir~iF~~FK~QRQTLLFSATM----------------P~KI---Q~FAk------------------------------ 376 (610)
T KOG0341|consen 346 DIRTIFSFFKGQRQTLLFSATM----------------PKKI---QNFAK------------------------------ 376 (610)
T ss_pred hHHHHHHHHhhhhheeeeeccc----------------cHHH---HHHHH------------------------------
Confidence 5555566677766 57779882 1000 00100
Q ss_pred HHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000101 1218 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1297 (2239)
Q Consensus 1218 RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niI 1297 (2239)
..+++|. ++.+- + .+ ..-++.+
T Consensus 377 --SALVKPv-------------------tvNVG----------------R---------AG------------AAsldVi 398 (610)
T KOG0341|consen 377 --SALVKPV-------------------TVNVG----------------R---------AG------------AASLDVI 398 (610)
T ss_pred --hhcccce-------------------EEecc----------------c---------cc------------ccchhHH
Confidence 0011110 00000 0 00 0000111
Q ss_pred HHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCC
Q 000101 1298 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1377 (2239)
Q Consensus 1298 mqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGst 1377 (2239)
.++- .+..-.|+.. +|.-+..+.-.|||||.-..-.|.|.+||-.+|+..+.|||+-
T Consensus 399 QevE--------------------yVkqEaKiVy---lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGK 455 (610)
T KOG0341|consen 399 QEVE--------------------YVKQEAKIVY---LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGK 455 (610)
T ss_pred HHHH--------------------HHHhhhhhhh---HHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCc
Confidence 1110 1112224333 3444566788999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1378 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1378 s~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
.+++|...|+.|+.+..+ +|++|++++-|||++++.+||+||.|-.-.+|.+||||++|-|.+.-.+.|
T Consensus 456 DQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTf 524 (610)
T KOG0341|consen 456 DQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTF 524 (610)
T ss_pred chhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeee
Confidence 999999999999987766 899999999999999999999999999999999999999999987644433
No 82
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.80 E-value=2.5e-19 Score=219.03 Aligned_cols=318 Identities=19% Similarity=0.271 Sum_probs=224.9
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---CC
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---SV 1076 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP---sl 1076 (2239)
-.+.|..++..... +..-|+-.--|+|||+++..++..-+......-..|||+|+. +..|....|.+.+| ++
T Consensus 48 ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 34678888876665 666788899999999987666555444444555679999998 77889999999987 57
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccC---hhhHHHHHhhccccc-
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD---RESVLARDLDRYRCQ- 1150 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN---~~SKlskaLk~Lka~- 1150 (2239)
++-+|+|+.+..... .+....+|+|.|+++|... ...+...+.+++|||||+.+.. ....+..++..++..
T Consensus 124 ~csvfIGGT~~~~d~---~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r 200 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDL---IRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR 200 (980)
T ss_pred ceEEEecCchhhhhh---hhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh
Confidence 899999987654333 4445678999999999765 3567777899999999999965 344566777777654
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhh-hHHhh
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE-PFMLR 1229 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLr-PFmLR 1229 (2239)
..++.|||=-+ +|. .+|.++++ |.++|
T Consensus 201 Qv~a~SATYp~-nLd---------------------------------------------------n~Lsk~mrdp~lVr 228 (980)
T KOG4284|consen 201 QVAAFSATYPR-NLD---------------------------------------------------NLLSKFMRDPALVR 228 (980)
T ss_pred eeeEEeccCch-hHH---------------------------------------------------HHHHHHhcccceee
Confidence 47778999311 111 12333333 22222
Q ss_pred HhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
-...++. -+.-+...+..|...- ....+|
T Consensus 229 ~n~~d~~-L~GikQyv~~~~s~nn------------------------------------------sveemr-------- 257 (980)
T KOG4284|consen 229 FNADDVQ-LFGIKQYVVAKCSPNN------------------------------------------SVEEMR-------- 257 (980)
T ss_pred cccCCce-eechhheeeeccCCcc------------------------------------------hHHHHH--------
Confidence 2222211 0111111111111000 000000
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHH
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1389 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~F 1389 (2239)
-|+..|..++..+- -...||||....-++-|..+|...|+.+..|.|.|++.+|..+++.+
T Consensus 258 -----------------lklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~l 318 (980)
T KOG4284|consen 258 -----------------LKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQL 318 (980)
T ss_pred -----------------HHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHh
Confidence 15566666665543 34689999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1390 Ns~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
+. -.++ ||+||+..++|||-..++.||++|+|-|-..|.||||||+|.|-.. ..|.++
T Consensus 319 r~--f~~r-ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G-~aVT~~ 376 (980)
T KOG4284|consen 319 RA--FRVR-ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG-AAVTLL 376 (980)
T ss_pred hh--ceEE-EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc-eeEEEe
Confidence 85 3344 6999999999999999999999999999999999999999999654 334444
No 83
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=5.6e-17 Score=208.03 Aligned_cols=413 Identities=17% Similarity=0.205 Sum_probs=226.8
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHH---HHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVN---WKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQ---W~~Ef~Kwa 1073 (2239)
+...+|-|+.|+--++. |.|.-..||.|||++++..+..... ....++||+|+.. ..+ |...|.+++
T Consensus 101 g~~p~~VQ~~~~~~ll~------G~Iae~~TGeGKTla~~lp~~~~al---~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 101 GQRHFDVQLMGGLALLS------GRLAEMQTGEGKTLTATLPAGTAAL---AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCCChHHHHHHHHHhC------CCeeeeeCCCCcHHHHHHHHHHHhh---cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 44566778888776664 3388899999999998776664432 2347899999984 444 555555554
Q ss_pred CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hhh--------------------------cccCCceEE
Q 000101 1074 PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSK--------------------------LSKVDWKYI 1125 (2239)
Q Consensus 1074 Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~--------------------------L~kikWd~V 1125 (2239)
++.+.++.|+.....+ ......+|+++|-..|.-| ++. +....+.++
T Consensus 172 -Glsv~~i~gg~~~~~r----~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 172 -GLTVGCVVEDQSPDER----RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred -CCEEEEEeCCCCHHHH----HHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 4666666665332111 1223679999997665332 111 112468999
Q ss_pred EecccccccChhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHH----hhhcCcc-cC----------C--h-HHHHh
Q 000101 1126 IIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLL----NLLLPEV-FD----------N--R-KAFHD 1187 (2239)
Q Consensus 1126 IIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLL----nFLlP~i-F~----------s--~-k~F~e 1187 (2239)
||||++.+. +.. +..-|++||.+-.....++|... .-|..+. |. + . ....+
T Consensus 247 IvDEvDSiL---------iDe--artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~ 315 (656)
T PRK12898 247 IVDEADSVL---------IDE--ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAE 315 (656)
T ss_pred Eeeccccee---------ecc--CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHH
Confidence 999999874 222 23347788855333233444333 2232221 10 0 0 00001
Q ss_pred hhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh-HHhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHH
Q 000101 1188 WFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIY 1259 (2239)
Q Consensus 1188 ~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP-FmLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY 1259 (2239)
.|.. +. ..|.. .....+.+...|+. +++.+-+.-+.. +....+| .+.| .+..-+.
T Consensus 316 ~~~~-l~---------~~~~~---~~~~~~~i~~Al~A~~l~~~d~dYiV~---d~~V~iv-D~~TGR~~~gr~w~~GLh 378 (656)
T PRK12898 316 LAES-LP---------PAWRG---AVRREELVRQALSALHLFRRDEHYIVR---DGKVVIV-DEFTGRVMPDRSWEDGLH 378 (656)
T ss_pred HhCc-ch---------hhccc---chHHHHHHHHHHHHHHHHhcCCceEEE---CCeEEEE-ECCCCeECCCCCcChHHH
Confidence 1100 00 00000 00012222233332 233333322221 1222222 2332 2344444
Q ss_pred HHHHHhcCcccCchhHH------hhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc----chh-hHhhcccH
Q 000101 1260 DWIKATGTLRVDPEDEK------RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL----SKD-FLVKSCGK 1328 (2239)
Q Consensus 1260 ~~I~~~~~l~l~~~~ek------~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~----s~d-~Li~~SGK 1328 (2239)
+.|.....+.+...... ....+......+....+......|.++.+-..+..|..... ... .......|
T Consensus 379 QaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K 458 (656)
T PRK12898 379 QMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAK 458 (656)
T ss_pred HHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHH
Confidence 54544333322221110 00000000000000111122344555444333322221111 111 12233458
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccc
Q 000101 1329 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1408 (2239)
Q Consensus 1329 LelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGe 1408 (2239)
+..|..++..+...+..|||||..+...+.|...|...|+++..|||... +|+..+..|....+. |||+|+++|+
T Consensus 459 ~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATdmAgR 533 (656)
T PRK12898 459 WAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATNMAGR 533 (656)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEccchhc
Confidence 88899988887777889999999999999999999999999999999865 555666666543333 8999999999
Q ss_pred ccCCC---cCc-----eEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1409 GLNLQ---SAD-----TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1409 GLNLq---aAD-----tVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
|+|+. .+. +||+||.|-|...|.|++||++|.|....+..| ++.++.+.
T Consensus 534 GtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~--is~eD~l~ 590 (656)
T PRK12898 534 GTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI--LSLEDDLL 590 (656)
T ss_pred ccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--echhHHHH
Confidence 99998 454 999999999999999999999999977555333 34444443
No 84
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=4.7e-18 Score=214.52 Aligned_cols=307 Identities=19% Similarity=0.207 Sum_probs=228.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPslkv 1078 (2239)
..|+-|.++++.+++ +.+.|....||.||++.+-.... + ..|.+|||.|. +|+...+..+.... +.+
T Consensus 17 ~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPAl--l----~~G~TLVVSPLiSLM~DQV~~l~~~G--i~A 84 (590)
T COG0514 17 SFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPAL--L----LEGLTLVVSPLISLMKDQVDQLEAAG--IRA 84 (590)
T ss_pred ccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHHH--h----cCCCEEEECchHHHHHHHHHHHHHcC--cee
Confidence 688899999999987 78899999999999987654332 2 25799999995 58888888887754 444
Q ss_pred EEEec--chhhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccCh-------hhHHHHHhhcc
Q 000101 1079 IYYVG--AKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR-------ESVLARDLDRY 1147 (2239)
Q Consensus 1079 vvy~G--skd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~-------~SKlskaLk~L 1147 (2239)
....+ +.+++......+..+..+++..++|.+... ...|...+..+++|||||.+-.. ...+......|
T Consensus 85 ~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~ 164 (590)
T COG0514 85 AYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL 164 (590)
T ss_pred ehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhC
Confidence 44433 467778888888888899999999999865 45677889999999999998543 33455555566
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
...-+++||||--.....|+...|+.-.+.+|.. .|..|-
T Consensus 165 ~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~------sfdRpN---------------------------------- 204 (590)
T COG0514 165 PNPPVLALTATATPRVRDDIREQLGLQDANIFRG------SFDRPN---------------------------------- 204 (590)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe------cCCCch----------------------------------
Confidence 7667999999965555666666555544433211 111110
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
-.|.....
T Consensus 205 -----------------------------i~~~v~~~------------------------------------------- 212 (590)
T COG0514 205 -----------------------------LALKVVEK------------------------------------------- 212 (590)
T ss_pred -----------------------------hhhhhhhc-------------------------------------------
Confidence 00000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~ 1387 (2239)
..++..++ -+.......+...||||..+...+.+..+|...|+....+||++..++|..+-+
T Consensus 213 -----------------~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~ 274 (590)
T COG0514 213 -----------------GEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQ 274 (590)
T ss_pred -----------------ccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHH
Confidence 00000111 011111223455899999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1388 ~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
+|..++.. ++++|.|.|.|||-+++..|||||.|-+...|.|=+|||+|-|...++.+++-
T Consensus 275 ~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~ 335 (590)
T COG0514 275 AFLNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYS 335 (590)
T ss_pred HHhcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeec
Confidence 99976655 79999999999999999999999999999999999999999998888766653
No 85
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=2.2e-18 Score=207.20 Aligned_cols=314 Identities=22% Similarity=0.276 Sum_probs=212.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HH---HHhCCCCCeE-EEechH-HHHHHHHHHHHHCC-
Q 000101 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LM---EFKGNYGPHL-IIVPNA-VLVNWKSELHKWLP- 1074 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Li---e~k~~~GP~L-IVVP~S-LLsQW~~Ef~KwaP- 1074 (2239)
.|.|-.+|.-.++ +...|--.-+|+|||-.+|-.+.. .+ +.+...+|++ |+||+. +..|...|.++|+.
T Consensus 247 tpiq~qalptals----grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ 322 (731)
T KOG0339|consen 247 TPIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKA 322 (731)
T ss_pred Ccccccccccccc----cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhh
Confidence 3445555554444 444444455999999777664433 22 2244667874 556876 88999999999964
Q ss_pred -CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHHhhcccc
Q 000101 1075 -SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRC 1149 (2239)
Q Consensus 1075 -slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka 1149 (2239)
+++++.++|+.....+.-. +. ....+||+|+++|+... ..+.-.+..|+|||||.+|.. ....+..+..+++.
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~-Lk-~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirp 400 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKE-LK-EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRP 400 (731)
T ss_pred ccceEEEeecCCcHHHHHHh-hh-cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCC
Confidence 5677666666554444322 33 67899999999998653 234445788999999999964 34445555556766
Q ss_pred ce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1150 QR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1150 ~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
++ .|++++|- .. ++.++
T Consensus 401 drQtllFsaTf--------------------------~~------------------------------kIe~l------ 418 (731)
T KOG0339|consen 401 DRQTLLFSATF--------------------------KK------------------------------KIEKL------ 418 (731)
T ss_pred cceEEEeeccc--------------------------hH------------------------------HHHHH------
Confidence 66 57778881 10 01111
Q ss_pred hHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1229 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1229 RRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
..+++ -+.+.++ ...+... +.-|++.-.+|-.
T Consensus 419 ---ard~L---~dpVrvV-qg~vgea---------------------------------------n~dITQ~V~V~~s-- 450 (731)
T KOG0339|consen 419 ---ARDIL---SDPVRVV-QGEVGEA---------------------------------------NEDITQTVSVCPS-- 450 (731)
T ss_pred ---HHHHh---cCCeeEE-Eeehhcc---------------------------------------ccchhheeeeccC--
Confidence 11111 1111111 1110000 0011111112211
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHH
Q 000101 1309 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1388 (2239)
Q Consensus 1309 L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~ 1388 (2239)
...|+..|.+-|.++... .+||||..-....+.|...|..++|++..+||++.+.+|.++|.+
T Consensus 451 ----------------~~~Kl~wl~~~L~~f~S~-gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 451 ----------------EEKKLNWLLRHLVEFSSE-GKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred ----------------cHHHHHHHHHHhhhhccC-CcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 123777777777776544 489999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1389 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1389 FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|+..... +|+.|+++.+||++....|||+||.--+-..+.|||||++|.|.+. ..|.|++
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kG--vayTlvT 573 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKG--VAYTLVT 573 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccc--eeeEEec
Confidence 9975555 7999999999999999999999999999999999999999999773 2455554
No 86
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=4.3e-17 Score=212.69 Aligned_cols=410 Identities=14% Similarity=0.184 Sum_probs=228.3
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHH---HHHHHHHHCCCC
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVN---WKSELHKWLPSV 1076 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQ---W~~Ef~KwaPsl 1076 (2239)
++||+...+-.++- ..|.|....||.|||++++..+..... ....++||+|+.. ..+ |...|.+|+ ++
T Consensus 77 ~~p~~vQl~~~~~l----~~G~Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl 148 (790)
T PRK09200 77 MRPYDVQLIGALVL----HEGNIAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMGQVYEFL-GL 148 (790)
T ss_pred CCCchHHHHhHHHH----cCCceeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHHHHHhhc-CC
Confidence 55554444444443 234488999999999988766543222 2347899999984 444 555565554 56
Q ss_pred ceEEEecchh-hHHHHHHHHhhcCccEEEEehhHHHH----h-h----hhcccCCceEEEecccccccChhhHHHHHhhc
Q 000101 1077 SCIYYVGAKD-QRSRLFSQVAALKFNVLVTTYEFIMY----D-R----SKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1146 (2239)
Q Consensus 1077 kvvvy~Gskd-~Rk~l~~~i~~~kfdVVITTYE~L~k----D-~----s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~ 1146 (2239)
.+.++.|... ...+. .....+|+++|+..+.- + . ..+....+.++||||+|+|. +..
T Consensus 149 ~v~~i~g~~~~~~~r~----~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL---------iDe 215 (790)
T PRK09200 149 TVGLNFSDIDDASEKK----AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL---------LDE 215 (790)
T ss_pred eEEEEeCCCCcHHHHH----HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce---------ecc
Confidence 7777766543 21111 12357999999877632 2 1 11233478999999999984 121
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhh----cCcc-cC----------Ch---HHHHhhhcCCcccCCCCCCCChhhHH
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLL----LPEV-FD----------NR---KAFHDWFSQPFQKEGPTHNADDDWLE 1208 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFL----lP~i-F~----------s~---k~F~e~F~kPf~~~g~~~~~e~d~l~ 1208 (2239)
+..-|++||.+-.. ..+|...+.+ .++. |. +. ....+.|..+ ..+
T Consensus 216 --a~tpliisg~~~~~--~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~-----------~l~-- 278 (790)
T PRK09200 216 --AQTPLIISGKPRVQ--SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGID-----------NLY-- 278 (790)
T ss_pred --CCCceeeeCCCccc--cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCc-----------ccc--
Confidence 12236777654222 2355444322 2210 00 00 0011111100 000
Q ss_pred HHHHHHHHHHHHHhhhh-HHhhHhHhhhhcCCCCceEEEEEe------ccCHHHHHHHHHHHHhcCcccCchhHHhhhhc
Q 000101 1209 TEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRC------RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1281 (2239)
Q Consensus 1209 ~ee~~lii~RLhklLrP-FmLRRlKkDVekdLP~K~e~VV~c------~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k 1281 (2239)
.......++.+...|+. +++.+-+.-+.. +....+|.- +-..+..-+.+.+.....+.+..... .+..
T Consensus 279 ~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~---~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~--t~a~ 353 (790)
T PRK09200 279 SLEHQVLYRHIILALRAHVLFKRDVDYIVY---DGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENR--TMAS 353 (790)
T ss_pred ChhhhHHHHHHHHHHHHHHHhhcCCcEEEE---CCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCce--ehhh
Confidence 00011112233333332 233333322221 111112111 11123344444444433332222111 0000
Q ss_pred Ch-hhHHHHHHHH-------HHHHHHHHHHcCCCCCCCCCccc-----cchhhHhhcccHHHHHHHHHHHHHhcCCeEEE
Q 000101 1282 NP-IYQAKVYKTL-------NNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 1348 (2239)
Q Consensus 1282 ~~-~~~~k~~ksL-------~niImqLRKiCnHP~L~~p~~~~-----~s~d~Li~~SGKLelLdrIL~kLkatGhKVLI 1348 (2239)
-. ..--+.|..+ ...-..|.++-+-+.+..|.... ...........|+..|...+......+.+|||
T Consensus 354 It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLI 433 (790)
T PRK09200 354 ITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLI 433 (790)
T ss_pred hhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 00 0000001110 11123455555555444433221 11112234456888888888887778999999
Q ss_pred EEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCC---CcCc-----eEEE
Q 000101 1349 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL---QSAD-----TVII 1420 (2239)
Q Consensus 1349 FSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNL---qaAD-----tVIi 1420 (2239)
||......+.|...|...|+++..|||.+...++..+...|.. +. |+|+|+.+|+|+|+ +.+. +||+
T Consensus 434 f~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g~---VlIATdmAgRG~DI~l~~~V~~~GGL~VI~ 508 (790)
T PRK09200 434 GTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--GA---VTVATNMAGRGTDIKLGEGVHELGGLAVIG 508 (790)
T ss_pred EeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--Ce---EEEEccchhcCcCCCcccccccccCcEEEe
Confidence 9999999999999999999999999999988887777766653 23 89999999999999 5787 9999
Q ss_pred cCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhh
Q 000101 1421 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1460 (2239)
Q Consensus 1421 fDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s 1460 (2239)
||.|-|+..|.|+.||++|.|....+..| ++.++.+..
T Consensus 509 ~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--is~eD~l~~ 546 (790)
T PRK09200 509 TERMESRRVDLQLRGRSGRQGDPGSSQFF--ISLEDDLLK 546 (790)
T ss_pred ccCCCCHHHHHHhhccccCCCCCeeEEEE--EcchHHHHH
Confidence 99999999999999999999988655333 344555543
No 87
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=9.9e-19 Score=205.85 Aligned_cols=337 Identities=19% Similarity=0.259 Sum_probs=216.3
Q ss_pred CCCCchhhhhhhhhHhhhhhhccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH-----HH
Q 000101 969 PRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-----YL 1043 (2239)
Q Consensus 969 p~~~s~~~kyy~lah~i~E~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa-----~L 1043 (2239)
|...+.+.+.|.--..+-|.+.+. .| .+..|.|-.+-.-++ .+...|-...||+|||+..+..-. ..
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~--GF--qKPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp 286 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKT--GF--QKPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQP 286 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhc--cC--CCCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccc
Confidence 344455555554333344444321 01 134455555432233 366678888999999988765321 11
Q ss_pred HHHhC-CCCCeEEEechH-HHHHHHHHHHHHC-CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcc
Q 000101 1044 MEFKG-NYGPHLIIVPNA-VLVNWKSELHKWL-PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLS 1118 (2239)
Q Consensus 1044 ie~k~-~~GP~LIVVP~S-LLsQW~~Ef~Kwa-Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~ 1118 (2239)
..... ....+||++|+. |..+...|..++- ..++.++++|.... ......+ ..+..++|+|+..|.+.. ..+.
T Consensus 287 ~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR-~eqie~l-krgveiiiatPgrlndL~~~n~i~ 364 (629)
T KOG0336|consen 287 KRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNR-NEQIEDL-KRGVEIIIATPGRLNDLQMDNVIN 364 (629)
T ss_pred hhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCc-hhHHHHH-hcCceEEeeCCchHhhhhhcCeee
Confidence 11112 223468888987 6677777877763 44544444443332 2222222 357899999999997652 3444
Q ss_pred cCCceEEEecccccccC--hhhHHHHHhhccccceEEEe-cCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCccc
Q 000101 1119 KVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQRRLLL-TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQK 1195 (2239)
Q Consensus 1119 kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~rRLLL-TGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~ 1195 (2239)
-....|+|||||++|.. +.-.+.+.|..++.++-.+| ||| .
T Consensus 365 l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSAT-W----------------------------------- 408 (629)
T KOG0336|consen 365 LASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSAT-W----------------------------------- 408 (629)
T ss_pred eeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeeccc-C-----------------------------------
Confidence 45688999999999965 66688889999988887666 565 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhH
Q 000101 1196 EGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1275 (2239)
Q Consensus 1196 ~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~e 1275 (2239)
|-.+||+.....++ +...++=.+.|.+
T Consensus 409 -----------------------------P~~VrrLa~sY~Ke--p~~v~vGsLdL~a---------------------- 435 (629)
T KOG0336|consen 409 -----------------------------PEGVRRLAQSYLKE--PMIVYVGSLDLVA---------------------- 435 (629)
T ss_pred -----------------------------chHHHHHHHHhhhC--ceEEEecccceee----------------------
Confidence 01122222211110 0001110000000
Q ss_pred HhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchh-hHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHH
Q 000101 1276 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD-FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK 1354 (2239)
Q Consensus 1276 k~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d-~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~ 1354 (2239)
| |. .... .+...+.|+..+..++.. .....||||||....
T Consensus 436 ----------------------------~-~s---------VkQ~i~v~~d~~k~~~~~~f~~~-ms~ndKvIiFv~~K~ 476 (629)
T KOG0336|consen 436 ----------------------------V-KS---------VKQNIIVTTDSEKLEIVQFFVAN-MSSNDKVIIFVSRKV 476 (629)
T ss_pred ----------------------------e-ee---------eeeeEEecccHHHHHHHHHHHHh-cCCCceEEEEEechh
Confidence 0 00 0000 011123355555554444 346789999999999
Q ss_pred HHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhh
Q 000101 1355 LLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 1434 (2239)
Q Consensus 1355 ~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAi 1434 (2239)
++|-|..-|...||....|||.-.+.+|+.+++.|+++.-. ||++|+.+++|||++++.+|++||.|-|-..|+||+
T Consensus 477 ~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vr---ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRv 553 (629)
T KOG0336|consen 477 MADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVR---ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRV 553 (629)
T ss_pred hhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceE---EEEEechhhcCCCchhcceeeccCCCccHHHHHHHh
Confidence 99999999999999999999999999999999999975443 799999999999999999999999999999999999
Q ss_pred hhhcccCCcceE
Q 000101 1435 ARAHRIGQKREV 1446 (2239)
Q Consensus 1435 GRAhRIGQkKeV 1446 (2239)
||++|.|.+...
T Consensus 554 GrtGRaGr~G~s 565 (629)
T KOG0336|consen 554 GRTGRAGRTGTS 565 (629)
T ss_pred cccccCCCCcce
Confidence 999999987653
No 88
>PRK09401 reverse gyrase; Reviewed
Probab=99.79 E-value=8.6e-18 Score=228.37 Aligned_cols=295 Identities=18% Similarity=0.211 Sum_probs=192.1
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
|.+++++|..++..++. +.+.++...||+|||..++.++.++. .....+|||||+. |+.||...|.+++...
T Consensus 78 G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~---~~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLA---KKGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 45899999998877775 77889999999999964443333332 2346799999987 8899999999998643
Q ss_pred --ceEEEecc----hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChh-------------
Q 000101 1077 --SCIYYVGA----KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE------------- 1137 (2239)
Q Consensus 1077 --kvvvy~Gs----kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~------------- 1137 (2239)
.+.+..|. ...+......+..+.++|+|+|++++.+....+...++++|||||||++....
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 33333332 23344444455666799999999999988777777779999999999985321
Q ss_pred -hHHHHHhhccc-------------------------cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcC
Q 000101 1138 -SVLARDLDRYR-------------------------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1191 (2239)
Q Consensus 1138 -SKlskaLk~Lk-------------------------a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~k 1191 (2239)
..+..++..++ ....+++|||.-...+... + |
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~--l--------------~------ 288 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK--L--------------F------ 288 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH--H--------------h------
Confidence 11222222221 1224445666321111000 0 0
Q ss_pred CcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccC
Q 000101 1192 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD 1271 (2239)
Q Consensus 1192 Pf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~ 1271 (2239)
..++. | ++...-.
T Consensus 289 ----------------------------~~ll~-~-------~v~~~~~------------------------------- 301 (1176)
T PRK09401 289 ----------------------------RELLG-F-------EVGSPVF------------------------------- 301 (1176)
T ss_pred ----------------------------hccce-E-------EecCccc-------------------------------
Confidence 00000 0 0000000
Q ss_pred chhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEc
Q 000101 1272 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFST 1351 (2239)
Q Consensus 1272 ~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ 1351 (2239)
.++.+. |-| +....|...|..++..+ +..+||||+
T Consensus 302 ---------------------------~~rnI~-~~y--------------i~~~~k~~~L~~ll~~l---~~~~LIFv~ 336 (1176)
T PRK09401 302 ---------------------------YLRNIV-DSY--------------IVDEDSVEKLVELVKRL---GDGGLIFVP 336 (1176)
T ss_pred ---------------------------ccCCce-EEE--------------EEcccHHHHHHHHHHhc---CCCEEEEEe
Confidence 000000 000 00002555566666543 468999999
Q ss_pred cHHH---HHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe----ccccccccCCCc-CceEEEcCC
Q 000101 1352 MTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDP 1423 (2239)
Q Consensus 1352 ~t~~---LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLS----TrAGGeGLNLqa-ADtVIifDp 1423 (2239)
.... ++.|.++|...|+++..+||++ .+.+++|.+++. . +||+ |+++++||||+. +.+|||||.
T Consensus 337 t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~--~-VLVatas~tdv~aRGIDiP~~IryVI~y~v 408 (1176)
T PRK09401 337 SDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEV--D-VLVGVASYYGVLVRGIDLPERIRYAIFYGV 408 (1176)
T ss_pred cccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCC--C-EEEEecCCCCceeecCCCCcceeEEEEeCC
Confidence 8666 9999999999999999999999 234699997544 4 4555 799999999999 899999999
Q ss_pred CC------CcchHHHhhhhhcccC
Q 000101 1424 DP------NPKNEEQAVARAHRIG 1441 (2239)
Q Consensus 1424 pW------NP~~dlQAiGRAhRIG 1441 (2239)
|- ....+.+++||+..+-
T Consensus 409 P~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 409 PKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CCEEEeccccccCHHHHHHHHhhc
Confidence 98 7788999999997554
No 89
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.79 E-value=6.1e-18 Score=214.71 Aligned_cols=358 Identities=18% Similarity=0.214 Sum_probs=228.6
Q ss_pred ccCCCChHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHHC
Q 000101 996 LRAGTLRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKWL 1073 (2239)
Q Consensus 996 L~ggtLRPYQleGLqwLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP-~SLLsQW~~Ef~Kwa 1073 (2239)
+....+|+||+.+++.++..+.++.+ .||++.||+|||.+||++|..|+. .+..+++|+++- ++|+.|-..+|..|.
T Consensus 161 ~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~~~~ 239 (875)
T COG4096 161 DSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK-SGWVKRVLFLADRNALVDQAYGAFEDFL 239 (875)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh-cchhheeeEEechHHHHHHHHHHHHHhC
Confidence 34568999999999999998876544 689999999999999999999986 566789999995 679999999999999
Q ss_pred CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh-------hcccCCceEEEecccccccChhhHHHHHhhc
Q 000101 1074 PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS-------KLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1146 (2239)
Q Consensus 1074 Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s-------~L~kikWd~VIIDEAHrIKN~~SKlskaLk~ 1146 (2239)
|....+....... ....+.|+|+||.++..... .+..-.||+||||||||- ..+.++.+..
T Consensus 240 P~~~~~n~i~~~~---------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I~d 307 (875)
T COG4096 240 PFGTKMNKIEDKK---------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWSSILD 307 (875)
T ss_pred CCccceeeeeccc---------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhHHHHH
Confidence 9876655443321 12267999999999986532 344457999999999994 2344456666
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
|-...+++|||||-..--..-+.+|| ..|...+. |...+.
T Consensus 308 YFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~Ys---------------------leeAV~-- 347 (875)
T COG4096 308 YFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYAYS---------------------LEEAVE-- 347 (875)
T ss_pred HHHHHHHhhccCcccccccccccccC-----------------CCcceeec---------------------HHHHhh--
Confidence 66677888899996532111122111 22222110 000000
Q ss_pred HhhHhHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1227 MLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~-e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
.-++ .|.+. ...++.....+- |. ...+....... ..+
T Consensus 348 ------DGfL--vpy~vi~i~~~~~~~G~~---~~-----------~~serek~~g~--------------------~i~ 385 (875)
T COG4096 348 ------DGFL--VPYKVIRIDTDFDLDGWK---PD-----------AGSEREKLQGE--------------------AID 385 (875)
T ss_pred ------cccc--CCCCceEEeeeccccCcC---cC-----------ccchhhhhhcc--------------------ccC
Confidence 0000 12221 112222111100 00 00000000000 000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhc---C---CeEEEEEccHHHHHHHHHHHHHc----C-CeEEeec
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT---G---HRVLLFSTMTKLLDILEEYLQWR----Q-LVYRRID 1374 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkat---G---hKVLIFSQ~t~~LDILed~L~~r----G-iky~RLD 1374 (2239)
-. ...++....+..+..-.....+++.|.++... | .|.||||....+++.|...|... + --+..|+
T Consensus 386 ~d---d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 386 ED---DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred cc---cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 00 00000001111111223445555666655444 3 58999999999999999999765 2 2356788
Q ss_pred CCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhccc-------CCcce-E
Q 000101 1375 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI-------GQKRE-V 1446 (2239)
Q Consensus 1375 Gsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRI-------GQkKe-V 1446 (2239)
|... .=+..|+.|-. +..+..|.+|.+...+|||.+.|-.+||+-.--+-..|.|-+||+-|+ ||.|. +
T Consensus 463 ~d~~--~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F 539 (875)
T COG4096 463 GDAE--QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFF 539 (875)
T ss_pred ccch--hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeE
Confidence 8765 44567888876 567778999999999999999999999999999999999999999997 34443 6
Q ss_pred EEEEEehh
Q 000101 1447 KVIYMEAV 1454 (2239)
Q Consensus 1447 ~VyrLvaV 1454 (2239)
.|+.++-+
T Consensus 540 ~ifDf~~~ 547 (875)
T COG4096 540 TIFDFVDN 547 (875)
T ss_pred EEEEhhhh
Confidence 77777553
No 90
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.79 E-value=1.3e-17 Score=227.40 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=84.8
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcC---------------------------------CeEEeecCCCCHHHHHHHHHH
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQ---------------------------------LVYRRIDGTTSLEDRESAIVD 1388 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rG---------------------------------iky~RLDGsts~eeRqeiL~~ 1388 (2239)
.+.++||||+.+..++.+...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998886531 124568899999999999999
Q ss_pred HhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhccc
Q 000101 1389 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1389 FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRI 1440 (2239)
|+++... +|++|.++++|||+..+|+||+|++|.+...++||+||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9975443 799999999999999999999999999999999999999985
No 91
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.78 E-value=3.8e-17 Score=212.42 Aligned_cols=318 Identities=21% Similarity=0.185 Sum_probs=216.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CC---CCeEEEechHHHHH-HHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NY---GPHLIIVPNAVLVN-WKSELHKW 1072 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~--~~---GP~LIVVP~SLLsQ-W~~Ef~Kw 1072 (2239)
.+|+|.|..++..+.. +.|.|+...||+|||.+|+..+...+...+ .. -.+|-|.|...|.+ ...-+..|
T Consensus 21 ~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 3799999999987775 999999999999999999887776554442 11 24799999885544 66667766
Q ss_pred CC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh------hhhcccCCceEEEecccccccC--hhhHHHH
Q 000101 1073 LP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKD--RESVLAR 1142 (2239)
Q Consensus 1073 aP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD------~s~L~kikWd~VIIDEAHrIKN--~~SKlsk 1142 (2239)
.. ++.+-+-+|......+ .......++|+|||++++.-. +..|. +..+|||||.|.+.+ ..+.++-
T Consensus 97 ~~~~G~~v~vRhGDT~~~er--~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiHel~~sKRG~~Lsl 172 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEK--QKMLKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIHALAESKRGVQLAL 172 (814)
T ss_pred HHHcCCccceecCCCChHHh--hhccCCCCcEEEeChhHHHHHhcCHHHHHHhc--CCcEEEeehhhhhhccccchhhhh
Confidence 53 4556666665443222 225566899999999998643 33444 456799999999975 4556666
Q ss_pred Hhhcc---c-cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000101 1143 DLDRY---R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1218 (2239)
Q Consensus 1143 aLk~L---k-a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~R 1218 (2239)
.|.++ . .-.|++||||= .++.+ +..||.+.-. +
T Consensus 173 ~LeRL~~l~~~~qRIGLSATV--~~~~~---varfL~g~~~------------~-------------------------- 209 (814)
T COG1201 173 SLERLRELAGDFQRIGLSATV--GPPEE---VAKFLVGFGD------------P-------------------------- 209 (814)
T ss_pred hHHHHHhhCcccEEEeehhcc--CCHHH---HHHHhcCCCC------------c--------------------------
Confidence 66655 2 34699999993 23222 2333321100 0
Q ss_pred HHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000101 1219 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1298 (2239)
Q Consensus 1219 LhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niIm 1298 (2239)
...|......+..+.+.++-......
T Consensus 210 -------------~~Iv~~~~~k~~~i~v~~p~~~~~~~----------------------------------------- 235 (814)
T COG1201 210 -------------CEIVDVSAAKKLEIKVISPVEDLIYD----------------------------------------- 235 (814)
T ss_pred -------------eEEEEcccCCcceEEEEecCCccccc-----------------------------------------
Confidence 00000011111111111110000000
Q ss_pred HHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC-CeEEeecCCC
Q 000101 1299 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ-LVYRRIDGTT 1377 (2239)
Q Consensus 1299 qLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG-iky~RLDGst 1377 (2239)
. .-...+...+.++..+...+|||++.+.+.+.+...|...+ ..+..-||+.
T Consensus 236 ------~---------------------~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSl 288 (814)
T COG1201 236 ------E---------------------ELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSL 288 (814)
T ss_pred ------c---------------------chhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccc
Confidence 0 00111233344445556689999999999999999999887 8888999999
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhh-cccCCcceEEEEEE
Q 000101 1378 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA-HRIGQKREVKVIYM 1451 (2239)
Q Consensus 1378 s~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRA-hRIGQkKeV~VyrL 1451 (2239)
+.+.|..+-++|.+++-+ .++||....+|||+-.+|.||+|.+|-.-...+||+||+ ||+|....-.|+-.
T Consensus 289 Sre~R~~vE~~lk~G~lr---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 289 SRELRLEVEERLKEGELK---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred cHHHHHHHHHHHhcCCce---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEec
Confidence 999999999999986544 688999999999999999999999999999999999999 67787655445444
No 92
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.78 E-value=8.7e-17 Score=210.04 Aligned_cols=371 Identities=15% Similarity=0.104 Sum_probs=206.4
Q ss_pred CCChHHHHHHHHHHHHhhcC------CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNN------KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n------~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
.-.|+||..+|+.++....+ ..+|||.+.+|+|||++++.++..++. ......+|||||.. |..||..+|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~-~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE-LLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh-hcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 35789999999999877654 357999999999999999999888774 34456799999965 99999999999
Q ss_pred HCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh-hhccc----CCceEEEecccccccChhhHHHHHhh-
Q 000101 1072 WLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR-SKLSK----VDWKYIIIDEAQRMKDRESVLARDLD- 1145 (2239)
Q Consensus 1072 waPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~-s~L~k----ikWd~VIIDEAHrIKN~~SKlskaLk- 1145 (2239)
+.+... .-.++ ...+...+......|+|||++.+.+.. ..+.. ....+||+|||||... ....+.|.
T Consensus 316 ~~~~~~--~~~~s---~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l~~ 388 (667)
T TIGR00348 316 LQKDCA--ERIES---IAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKNLKK 388 (667)
T ss_pred hCCCCC--cccCC---HHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHHHHh
Confidence 875311 11122 222323344445789999999997521 11111 1234899999999742 33445554
Q ss_pred ccccceEEEecCCCCCCCHHHHHHHHhhhcCcc---cCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1146 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV---FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1146 ~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~i---F~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
.|+...+|+|||||+...-.+-+..+....-.+ +.-.+...+-+..|+.......
T Consensus 389 ~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~---------------------- 446 (667)
T TIGR00348 389 ALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLP---------------------- 446 (667)
T ss_pred hCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecch----------------------
Confidence 567788999999998642111111111100000 0111112222222221111000
Q ss_pred hhhHHhhHhHhhhhcCCCCceEEEEEeccCHHH-HHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQ-SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Q-r~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
+. .++... ...++.........+.. . ....+......+.
T Consensus 447 -----------~~--------------~~~~~~l~~~~~~~~~~~~~~~~~-~--------------~~~~l~~~~~~~~ 486 (667)
T TIGR00348 447 -----------ED--------------HLDRKKLDAFFDEIFELLPERIRE-I--------------TKESLKEKLQKTK 486 (667)
T ss_pred -----------hh--------------ccChHHHHHHHHHHHHhhhccccH-H--------------HHHHHHHHHHHHH
Confidence 00 000000 00011000000000000 0 0000111111111
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-----CCeEEeecCC
Q 000101 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGT 1376 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-----Giky~RLDGs 1376 (2239)
.+..++.. +....+ .++..........+.|.+|||..+..+..+.+.|... +...+.++|+
T Consensus 487 ~~~~~~~~-------------~~~ia~-~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~ 552 (667)
T TIGR00348 487 KILFNEDR-------------LESIAK-DIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGK 552 (667)
T ss_pred hhhcChHH-------------HHHHHH-HHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCC
Confidence 11111100 000000 0011111111222579999999999988887777543 3455677776
Q ss_pred CCHH---------------------HHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhh
Q 000101 1377 TSLE---------------------DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 1435 (2239)
Q Consensus 1377 ts~e---------------------eRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiG 1435 (2239)
...+ ....++++|..+ ..+. |||+++...+|.|.+.++++++.-|--+ +.++|++|
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~ 629 (667)
T TIGR00348 553 ESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPK-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIA 629 (667)
T ss_pred ccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCce-EEEEEcccccccCCCccceEEEeccccc-cHHHHHHH
Confidence 5433 224789999863 3344 5777799999999999999999888765 56899999
Q ss_pred hhccc-CC-cceEEEEEEehhhh
Q 000101 1436 RAHRI-GQ-KREVKVIYMEAVVD 1456 (2239)
Q Consensus 1436 RAhRI-GQ-kKeV~VyrLvaVEE 1456 (2239)
|+.|+ +. |....|+.++.+.+
T Consensus 630 R~nR~~~~~K~~g~IvDy~g~~~ 652 (667)
T TIGR00348 630 RTNRIDGKDKTFGLIVDYRGLEK 652 (667)
T ss_pred HhccccCCCCCCEEEEECcChHH
Confidence 99995 43 34568888865433
No 93
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=1e-18 Score=180.48 Aligned_cols=106 Identities=24% Similarity=0.387 Sum_probs=100.5
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhcc---CCCCCHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR---LEYNGVMELVSDVQ 2010 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~---~eY~~v~ef~~D~q 2010 (2239)
|++.-+++|..|+.+|.. +..+..|+..+.+ ++|+||++ |++||||.+|++||+. +.|.++.+|..||.
T Consensus 1 ~~~~~~~~c~~il~~l~~------~~~s~~F~~pv~~-~~p~Y~~i-I~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~ 72 (109)
T cd05502 1 LSPIDQRKCERLLLELYC------HELSLPFHEPVSP-SVPNYYKI-IKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVR 72 (109)
T ss_pred CCHHHHHHHHHHHHHHHh------CCCChhhcCCCCC-CCCCHHHH-CCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence 567888999999999954 4789999999988 99999999 9999999999999998 69999999999999
Q ss_pred HHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000101 2011 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 2047 (2239)
Q Consensus 2011 LM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~ 2047 (2239)
|||.||+.||+++|.++.+|..|+++|..+|+..|||
T Consensus 73 li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 73 LMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999999999999997
No 94
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.77 E-value=2.2e-17 Score=212.71 Aligned_cols=413 Identities=14% Similarity=0.147 Sum_probs=223.3
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CCc
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SVS 1077 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--slk 1077 (2239)
++||....+-.++- +.|.|.-..||.|||++++..+. +.... ...++||+|+. |..+-..++..++. ++.
T Consensus 55 ~~p~~vQlig~~~l----~~G~Iaem~TGeGKTLva~lpa~-l~aL~--G~~V~VvTpt~~LA~qdae~~~~l~~~LGLs 127 (745)
T TIGR00963 55 MRPFDVQLIGGIAL----HKGKIAEMKTGEGKTLTATLPAY-LNALT--GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLS 127 (745)
T ss_pred CCccchHHhhhhhh----cCCceeeecCCCccHHHHHHHHH-HHHHh--CCCEEEEcCCHHHHHHHHHHHHHHhccCCCe
Confidence 66665555445543 23447779999999998765442 22222 23689999998 55554444444443 366
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHH----hh-----hhcccCCceEEEecccccccChhhHHHHHhhcc-
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMY----DR-----SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY- 1147 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~k----D~-----s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L- 1147 (2239)
+.+..|+.....+ ......+|+++|+..|-. +. ..+....+.++||||+|++.=......-.+..-
T Consensus 128 v~~i~g~~~~~~r----~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 128 VGLILSGMSPEER----REAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred EEEEeCCCCHHHH----HHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 6666665332211 122357999999997722 21 123345789999999999853222111111110
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhc----CcccCCh---HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLL----PEVFDNR---KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1220 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLl----P~iF~s~---k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLh 1220 (2239)
.....+.+++||+...+.+= .+|.. ..++-+. ....+.|..+ . +.........+.+.
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~---~dy~~de~~k~v~Lt~~G~~~~e~~~~~~--~-----------ly~~~~~~~~~~i~ 267 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKE---VHYEVDEKNRAVLLTEKGIKKAEDLLGVD--N-----------LYDLENSPLIHYIN 267 (745)
T ss_pred CCchHHHHHHHHHHHhhccC---CCeEEecCCCceeECHHHHHHHHHHcCCc--c-----------ccChhhhHHHHHHH
Confidence 11122333444433322200 00100 0000000 0111111100 0 00000111222333
Q ss_pred Hhhhh-HHhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHHh------hhhcChhhH
Q 000101 1221 QILEP-FMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR------RVQKNPIYQ 1286 (2239)
Q Consensus 1221 klLrP-FmLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek~------~l~k~~~~~ 1286 (2239)
..|+. +++.+-+.-+.. +....+|. ..| .+..-+.+.+.....+.+....... ...+.....
T Consensus 268 ~Al~A~~l~~~d~dYiV~---d~~V~ivD-~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl 343 (745)
T TIGR00963 268 NALKAKELFEKDVDYIVR---DGEVVIVD-EFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKL 343 (745)
T ss_pred HHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchh
Confidence 33333 233333332221 11112221 111 2333444444433322222111100 000000000
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCcccc----chhhH-hhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHH
Q 000101 1287 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDL----SKDFL-VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEE 1361 (2239)
Q Consensus 1287 ~k~~ksL~niImqLRKiCnHP~L~~p~~~~~----s~d~L-i~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed 1361 (2239)
.+...........|+++-+-+.+..|..... ..+.+ .....|+..+...+.++...|..|||||......+.|..
T Consensus 344 ~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~ 423 (745)
T TIGR00963 344 SGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSN 423 (745)
T ss_pred hccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHH
Confidence 0000011122345677766665544433221 11112 223358888888787888899999999999999999999
Q ss_pred HHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCc-------CceEEEcCCCCCcchHHHhh
Q 000101 1362 YLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS-------ADTVIIYDPDPNPKNEEQAV 1434 (2239)
Q Consensus 1362 ~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqa-------ADtVIifDppWNP~~dlQAi 1434 (2239)
+|...|+++..|+|. ..+|+..|..|....+ .|+|+|+.+|+|+|+.. ..+||+++.|-|...+.|+.
T Consensus 424 ~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g---~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~ 498 (745)
T TIGR00963 424 LLKERGIPHNVLNAK--NHEREAEIIAQAGRKG---AVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLR 498 (745)
T ss_pred HHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCc---eEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHh
Confidence 999999999999998 7799999999975434 38999999999999998 66999999999999999999
Q ss_pred hhhcccCCcceEEEE
Q 000101 1435 ARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1435 GRAhRIGQkKeV~Vy 1449 (2239)
||++|.|....+..|
T Consensus 499 GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 499 GRSGRQGDPGSSRFF 513 (745)
T ss_pred ccccCCCCCcceEEE
Confidence 999999988665443
No 95
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.76 E-value=2.6e-18 Score=208.42 Aligned_cols=333 Identities=18% Similarity=0.235 Sum_probs=206.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-----------hCCCCC--eEEEechH-HHHHHHH
Q 000101 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-----------KGNYGP--HLIIVPNA-VLVNWKS 1067 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~-----------k~~~GP--~LIVVP~S-LLsQW~~ 1067 (2239)
.+.|...|.-++. .....|-|.|||+|||+.+...|..-+.. ...+.. .|||+|+. |..|.+.
T Consensus 205 t~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~ 281 (731)
T KOG0347|consen 205 TEIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQ 281 (731)
T ss_pred ccchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHH
Confidence 3445444444443 12445778999999999988777652211 111122 69999998 7888888
Q ss_pred HHHHHCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh----hcccC-CceEEEecccccc--cChhh
Q 000101 1068 ELHKWLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS----KLSKV-DWKYIIIDEAQRM--KDRES 1138 (2239)
Q Consensus 1068 Ef~KwaP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s----~L~ki-kWd~VIIDEAHrI--KN~~S 1138 (2239)
-|...++ .+.+..+.|+-...++- .+....++|||+|+++|..... +|.++ +..++||||++|| +.+-.
T Consensus 282 Hl~ai~~~t~i~v~si~GGLavqKQq--RlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~ 359 (731)
T KOG0347|consen 282 HLKAIAEKTQIRVASITGGLAVQKQQ--RLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFE 359 (731)
T ss_pred HHHHhccccCeEEEEeechhHHHHHH--HHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHH
Confidence 8887764 67777788876554432 2333488999999999975432 23333 5689999999999 44445
Q ss_pred HHHHHhhccc-----c-ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHH
Q 000101 1139 VLARDLDRYR-----C-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1212 (2239)
Q Consensus 1139 KlskaLk~Lk-----a-~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~ 1212 (2239)
.+++.|..+. . ..-+++|||- .|.. ..|..........+
T Consensus 360 Els~lL~~L~e~~~~~qrQTlVFSATl------------t~~~--------------~~~~~~~~k~~~k~--------- 404 (731)
T KOG0347|consen 360 ELSKLLKHLNEEQKNRQRQTLVFSATL------------TLVL--------------QQPLSSSRKKKDKE--------- 404 (731)
T ss_pred HHHHHHHHhhhhhcccccceEEEEEEe------------ehhh--------------cChhHHhhhccchh---------
Confidence 5666666553 1 2247788882 1110 00110000000000
Q ss_pred HHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHH
Q 000101 1213 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1292 (2239)
Q Consensus 1213 ~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ks 1292 (2239)
...-..+..++. .+.-.-+++ + +.+++.+...
T Consensus 405 ~~~~~kiq~Lmk---------~ig~~~kpk---i--iD~t~q~~ta---------------------------------- 436 (731)
T KOG0347|consen 405 DELNAKIQHLMK---------KIGFRGKPK---I--IDLTPQSATA---------------------------------- 436 (731)
T ss_pred hhhhHHHHHHHH---------HhCccCCCe---e--EecCcchhHH----------------------------------
Confidence 001112222221 111111222 1 2222222110
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEe
Q 000101 1293 LNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1372 (2239)
Q Consensus 1293 L~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~R 1372 (2239)
..+..-+-.| |.+.... ..-++ +..-..|.||||+..+.+..|.-+|...++..+.
T Consensus 437 --~~l~Es~I~C--~~~eKD~----ylyYf----------------l~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 437 --STLTESLIEC--PPLEKDL----YLYYF----------------LTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred --HHHHHHhhcC--Cccccce----eEEEE----------------EeecCCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 1122222234 2111100 00000 0112458999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1373 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1373 LDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
||..|.++.|.+.+++|.... ..+||+|+++++|||++.+++||+|-.|-....|+||-||+.|.+.. .|.|..
T Consensus 493 LHA~M~QKqRLknLEkF~~~~---~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsvml 566 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSP---SGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSVML 566 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCC---CeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC-CeEEEE
Confidence 999999999999999998632 35899999999999999999999999999999999999999999844 454443
No 96
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.76 E-value=1.4e-18 Score=176.24 Aligned_cols=95 Identities=21% Similarity=0.342 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000101 1940 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2019 (2239)
Q Consensus 1940 ~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~y 2019 (2239)
++|.+||++|..+ ..+..|+..+.+.++||||++ |++||||.+|..||+.++|.++++|..||+|||+||+.|
T Consensus 3 ~~c~~il~~l~~~------~~s~~F~~pv~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 75 (97)
T cd05505 3 QKCEEILSKILKY------RFSWPFREPVTADEAEDYKKV-ITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKY 75 (97)
T ss_pred HHHHHHHHHHHhC------CCcccccCCCChhhcccHHHH-cCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4899999999654 356899999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHH
Q 000101 2020 YGFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2020 n~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
|+++|.||.+|.+|+++|.+++
T Consensus 76 N~~~s~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 76 YENGSYVLSCMRKTEQCCVNLL 97 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998763
No 97
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.76 E-value=1.2e-16 Score=201.60 Aligned_cols=306 Identities=19% Similarity=0.279 Sum_probs=210.4
Q ss_pred CChHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCC--
Q 000101 1000 TLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLP-- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaP-- 1074 (2239)
+|...|..++.-+..-.... .+-+|--++|+|||+.|+..+...++ ...-+.+.+|+.+ ..|-...|.+|++
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---~G~Q~ALMAPTEILA~QH~~~~~~~l~~~ 338 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---AGYQAALMAPTEILAEQHYESLRKWLEPL 338 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---cCCeeEEeccHHHHHHHHHHHHHHHhhhc
Confidence 67789999998777544332 34588889999999998777766665 2346799999994 5778889999997
Q ss_pred CCceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-c-cc
Q 000101 1075 SVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-R-CQ 1150 (2239)
Q Consensus 1075 slkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-k-a~ 1150 (2239)
++.+.+..|+ ...|+.....+..+..+|||.|+..|..... -.+..+|||||-||+.- ..-..|..- . ..
T Consensus 339 ~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~---F~~LgLVIiDEQHRFGV---~QR~~L~~KG~~~P 412 (677)
T COG1200 339 GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVE---FHNLGLVIIDEQHRFGV---HQRLALREKGEQNP 412 (677)
T ss_pred CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhccee---ecceeEEEEeccccccH---HHHHHHHHhCCCCC
Confidence 5677777776 4466777788899999999999998865433 34678999999999842 222333322 3 57
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
+.|.||||||..++.= . .|++.
T Consensus 413 h~LvMTATPIPRTLAl--t--------~fgDl------------------------------------------------ 434 (677)
T COG1200 413 HVLVMTATPIPRTLAL--T--------AFGDL------------------------------------------------ 434 (677)
T ss_pred cEEEEeCCCchHHHHH--H--------Hhccc------------------------------------------------
Confidence 8999999999887541 0 11110
Q ss_pred hHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1231 RVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1231 lKkDVekdLP~K~-e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
.-.+.++||+.. .+..+|--...-..+|+++.
T Consensus 435 -dvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~---------------------------------------------- 467 (677)
T COG1200 435 -DVSIIDELPPGRKPITTVVIPHERRPEVYERIR---------------------------------------------- 467 (677)
T ss_pred -cchhhccCCCCCCceEEEEeccccHHHHHHHHH----------------------------------------------
Confidence 001234577763 22222211111222333221
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHH--------HHHHHHHHHHH--cCCeEEeecCCCCH
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQW--RQLVYRRIDGTTSL 1379 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~--------~LDILed~L~~--rGiky~RLDGsts~ 1379 (2239)
.++ ..|+++.+.|.-.+ .+..+...|.. -++++..+||.|+.
T Consensus 468 ---------------------------~ei-~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~ 519 (677)
T COG1200 468 ---------------------------EEI-AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKP 519 (677)
T ss_pred ---------------------------HHH-HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCCh
Confidence 111 13444444443322 12223333432 26678899999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCC-CCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1380 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1380 eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp-WNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+++++++.+|++++.+ ||+||-+..+|||+++|+.+||+|.. +--++..|--||++|=+...-|..++
T Consensus 520 ~eKd~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~ 588 (677)
T COG1200 520 AEKDAVMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLY 588 (677)
T ss_pred HHHHHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEe
Confidence 9999999999987766 89999999999999999999999998 78899999999999966665554443
No 98
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.75 E-value=2.5e-18 Score=180.13 Aligned_cols=109 Identities=15% Similarity=0.248 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
+.+++.|.+||+.|..+ ..+..|+.++...++||||++ |++||||.+|.+||.++.|.++.+|..||.|||.|
T Consensus 4 ~~w~~~c~~il~~l~~~------~~s~~F~~PVd~~~~pdY~~i-Ik~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~N 76 (119)
T cd05496 4 SDWKKQCKELVNLMWDC------EDSEPFRQPVDLLKYPDYRDI-IDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSN 76 (119)
T ss_pred HHHHHHHHHHHHHHHhC------CccccccCCCChhhcCcHHHH-hCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999765 457899999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCC-CcHHHHHHHHHHHHHHHHHHHhCCCCchHHh
Q 000101 2016 AMQFYGF-SHEVRSEARKVHDLFFDLLKIAFPDTDFREA 2053 (2239)
Q Consensus 2016 a~~yn~~-~sev~~dA~~L~~~f~~~~k~~fP~~df~~a 2053 (2239)
|+.||++ +|.||.+|..|+++|..+++...+ +|..|
T Consensus 77 a~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~--~~~~~ 113 (119)
T cd05496 77 SKSYTPNKRSRIYSMTLRLSALFEEHIKKIIS--DWKSA 113 (119)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 9999985 999999999999999999999866 45444
No 99
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.75 E-value=4.3e-18 Score=175.33 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
..+|+...+|+..|..+.|++||.+++.|++||+++ |+||.+ |++||||.+|..||++++|.++++|..||.|||.|
T Consensus 2 ~~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~~~--~~~~~~-ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 2 LLVQELLATLFVSVMNHQDEEGRCYSDSLAELPELA--VDGVGP-KKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred hHHHHHHHHHHHHHHhccCCCCCCchHHHHHCCCcc--cCchhh-hcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 356788889999999999999999999999999955 677888 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000101 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2045 (2239)
Q Consensus 2016 a~~yn~~~sev~~dA~~L~~~f~~~~k~~f 2045 (2239)
|+.||.++|++|+||..|+++|..+..+.+
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998776654
No 100
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.75 E-value=2.6e-16 Score=204.12 Aligned_cols=325 Identities=16% Similarity=0.198 Sum_probs=192.4
Q ss_pred CCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH---------HHH---HhCCCCCeEEEech
Q 000101 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY---------LME---FKGNYGPHLIIVPN 1059 (2239)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~---------Lie---~k~~~GP~LIVVP~ 1059 (2239)
-|.-|....|++.|...=+.++..+..+...|+..+||+|||.++=-++.+ .++ .....+++||++|.
T Consensus 152 n~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Pr 231 (675)
T PHA02653 152 NPEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPR 231 (675)
T ss_pred CCCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcH
Confidence 344455567888887777777777777889999999999999874322221 111 02234579999998
Q ss_pred H-HHHHHHHHHHHHC-----CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccc
Q 000101 1060 A-VLVNWKSELHKWL-----PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1060 S-LLsQW~~Ef~Kwa-----Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrI 1133 (2239)
. ++.+...++.+.. .+..+.+..|+.... .. .......+++|+|..... . .-.++.+|||||||.+
T Consensus 232 reLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~-~t~~k~~~Ilv~T~~L~l---~--~L~~v~~VVIDEaHEr 303 (675)
T PHA02653 232 VALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDE--LI-NTNPKPYGLVFSTHKLTL---N--KLFDYGTVIIDEVHEH 303 (675)
T ss_pred HHHHHHHHHHHHHHhCccccCCceEEEEECCcchH--Hh-hcccCCCCEEEEeCcccc---c--ccccCCEEEccccccC
Confidence 7 6667777776543 234455555554321 10 112225689999865311 1 1236889999999998
Q ss_pred cChhhHHHHHhhccc-c-ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHH
Q 000101 1134 KDRESVLARDLDRYR-C-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEK 1211 (2239)
Q Consensus 1134 KN~~SKlskaLk~Lk-a-~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee 1211 (2239)
......+...++.+. . ...+++|||.- .+.. .|.++|..|....
T Consensus 304 ~~~~DllL~llk~~~~~~rq~ILmSATl~-~dv~------------------~l~~~~~~p~~I~--------------- 349 (675)
T PHA02653 304 DQIGDIIIAVARKHIDKIRSLFLMTATLE-DDRD------------------RIKEFFPNPAFVH--------------- 349 (675)
T ss_pred ccchhHHHHHHHHhhhhcCEEEEEccCCc-HhHH------------------HHHHHhcCCcEEE---------------
Confidence 654444444444332 2 25788999951 1111 1222221111000
Q ss_pred HHHHHHHHHHhhhhHHhhHhHhhhhc-CCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHH
Q 000101 1212 KVIIIHRLHQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY 1290 (2239)
Q Consensus 1212 ~~lii~RLhklLrPFmLRRlKkDVek-dLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ 1290 (2239)
+.. .+.+-....+.....+.+...|- .
T Consensus 350 -----------------------I~grt~~pV~~~yi~~~~~~~~~~~y~--~--------------------------- 377 (675)
T PHA02653 350 -----------------------IPGGTLFPISEVYVKNKYNPKNKRAYI--E--------------------------- 377 (675)
T ss_pred -----------------------eCCCcCCCeEEEEeecCcccccchhhh--H---------------------------
Confidence 000 00111111111110000000000 0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHH-HhcCCeEEEEEccHHHHHHHHHHHHHc--C
Q 000101 1291 KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWR--Q 1367 (2239)
Q Consensus 1291 ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kL-katGhKVLIFSQ~t~~LDILed~L~~r--G 1367 (2239)
..|..++ .++..+ ...+..+|||+.....++.+...|... +
T Consensus 378 -----------------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~ 421 (675)
T PHA02653 378 -----------------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPI 421 (675)
T ss_pred -----------------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCC
Confidence 0011111 111111 123568999999999999999999877 7
Q ss_pred CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcC---CC---------CCcchHHHhhh
Q 000101 1368 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD---PD---------PNPKNEEQAVA 1435 (2239)
Q Consensus 1368 iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifD---pp---------WNP~~dlQAiG 1435 (2239)
+.+..|||+++.. ++.+++|.. .+. +-||++|+++++|||++++++||.++ .+ .+...+.||.|
T Consensus 422 ~~v~~LHG~Lsq~--eq~l~~ff~-~gk-~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaG 497 (675)
T PHA02653 422 YDFYIIHGKVPNI--DEILEKVYS-SKN-PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKG 497 (675)
T ss_pred ceEEeccCCcCHH--HHHHHHHhc-cCc-eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhcc
Confidence 9999999999864 567788742 223 34799999999999999999999998 22 26678999999
Q ss_pred hhcccCCcceEEEEEEeh
Q 000101 1436 RAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1436 RAhRIGQkKeV~VyrLva 1453 (2239)
|++|.. +-.+|+|.+
T Consensus 498 RAGR~~---~G~c~rLyt 512 (675)
T PHA02653 498 RVGRVS---PGTYVYFYD 512 (675)
T ss_pred CcCCCC---CCeEEEEEC
Confidence 999983 344556654
No 101
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.75 E-value=4.2e-18 Score=177.56 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=97.6
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
.+|...+. +|..||.+|... ..+..|+.++++.++||||++ |++||||.+|++||+.++|.++.+|..||.|
T Consensus 8 ~~~~~~~~-~c~~il~~l~~~------~~s~~F~~pvd~~~~pdY~~v-I~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~L 79 (115)
T cd05504 8 HHGPLNLS-ALEQLLVEIVKH------KDSWPFLRPVSKIEVPDYYDI-IKKPMDLGTIKEKLNMGEYKLAEEFLSDIQL 79 (115)
T ss_pred CCCHHHHH-HHHHHHHHHHhC------CCchhhcCCCCccccccHHHH-hcCcccHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 46777776 899999999654 357899999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||.||+.||+++|.+|.+|..|+++|.++++..
T Consensus 80 I~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 80 VFSNCFLYNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
No 102
>smart00297 BROMO bromo domain.
Probab=99.75 E-value=4.1e-18 Score=173.67 Aligned_cols=103 Identities=23% Similarity=0.389 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
+++|+.++..|...++. ++++..|+.+|++.++|+||++ |.+||||.+|++||++++|.++++|..||.|||.||+.
T Consensus 5 ~~~~~~~~~~i~~~~~~--~~~~~~F~~~~~~~~~p~Y~~~-i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T smart00297 5 QKKLQSLLKAVLDKLDS--HRLSWPFLKPVDRKEAPDYYDI-IKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKT 81 (107)
T ss_pred HHHHHHHHHHHHHHHHh--CccchhhccCCChhhccCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44555555555544443 5899999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2019 FYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||+++|.+|.+|..|+++|.++|+++
T Consensus 82 ~n~~~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 82 YNGPDSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999863
No 103
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.74 E-value=3.5e-16 Score=191.13 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=72.1
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcC--CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQ--LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1419 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rG--iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVI 1419 (2239)
.+.|+||||+....++.+...|...+ +.+..++|.++..+|.++. .. .||++|+++++|||+.. ++||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~---~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QF---DILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cC---CEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999999765 5788999999999987653 12 38999999999999986 4666
Q ss_pred EcCCCCCcchHHHhhhhhc
Q 000101 1420 IYDPDPNPKNEEQAVARAH 1438 (2239)
Q Consensus 1420 ifDppWNP~~dlQAiGRAh 1438 (2239)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 678899999999985
No 104
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.74 E-value=1e-16 Score=191.26 Aligned_cols=306 Identities=16% Similarity=0.193 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH-HHhC----CCC-CeEEEechH-HHHHHHHHHHHH---C
Q 000101 1004 YQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM-EFKG----NYG-PHLIIVPNA-VLVNWKSELHKW---L 1073 (2239)
Q Consensus 1004 YQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Li-e~k~----~~G-P~LIVVP~S-LLsQW~~Ef~Kw---a 1073 (2239)
.|..++..++. +...+.-.-||+|||...+..+...+ ..+. ..+ ..+|+||+. |+.|....|.+. |
T Consensus 45 IQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 45 IQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred hhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 46667777765 66667778899999999888766544 3222 122 469999987 777777777665 3
Q ss_pred C-CCceEEEec-chhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccChhh--HHHHHhhc
Q 000101 1074 P-SVSCIYYVG-AKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRES--VLARDLDR 1146 (2239)
Q Consensus 1074 P-slkvvvy~G-skd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN~~S--KlskaLk~ 1146 (2239)
+ .++++-... ..+.. ...+....++|||+|+..+.+.... .......++|+|||+.+...+. .+.+....
T Consensus 121 ~k~lr~~nl~s~~sdsv---~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~ 197 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDSV---NSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSH 197 (569)
T ss_pred HHhhhhhhhhcccchHH---HHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHh
Confidence 3 333333332 12211 1124456789999999999876431 2334678999999999876443 34444445
Q ss_pred cccce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhh--
Q 000101 1147 YRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL-- 1223 (2239)
Q Consensus 1147 Lka~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklL-- 1223 (2239)
++..+ .+++|||- .. .+..|.+++
T Consensus 198 LPr~~Q~~LmSATl-~d----------------------------------------------------Dv~~LKkL~l~ 224 (569)
T KOG0346|consen 198 LPRIYQCFLMSATL-SD----------------------------------------------------DVQALKKLFLH 224 (569)
T ss_pred CCchhhheeehhhh-hh----------------------------------------------------HHHHHHHHhcc
Confidence 54333 57788882 00 122344433
Q ss_pred hhHHhhHhHhhhhcCCC--Cc-eEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000101 1224 EPFMLRRRVEDVEGSLP--PK-VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1300 (2239)
Q Consensus 1224 rPFmLRRlKkDVekdLP--~K-~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqL 1300 (2239)
.|++|.-.- .++| .+ ..+.+.|. +.
T Consensus 225 nPviLkl~e----~el~~~dqL~Qy~v~cs--e~---------------------------------------------- 252 (569)
T KOG0346|consen 225 NPVILKLTE----GELPNPDQLTQYQVKCS--EE---------------------------------------------- 252 (569)
T ss_pred CCeEEEecc----ccCCCcccceEEEEEec--cc----------------------------------------------
Confidence 344432211 1233 11 12333332 11
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHH
Q 000101 1301 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1380 (2239)
Q Consensus 1301 RKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~e 1380 (2239)
.|+.+|.-+|. +.--..|.|||.+..+....|.-+|..-|++.|.|+|.++..
T Consensus 253 --------------------------DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~N 305 (569)
T KOG0346|consen 253 --------------------------DKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPAN 305 (569)
T ss_pred --------------------------hhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhccccccc
Confidence 13333333222 211245899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEecc--------------------------c---------cccccCCCcCceEEEcCCCC
Q 000101 1381 DRESAIVDFNSHDSDCFIFLLSIR--------------------------A---------AGRGLNLQSADTVIIYDPDP 1425 (2239)
Q Consensus 1381 eRqeiL~~FNs~ds~~~VfLLSTr--------------------------A---------GGeGLNLqaADtVIifDppW 1425 (2239)
.|..+|++||.+ -|. +||+|+ . .++|||++.+.+||+||.|-
T Consensus 306 SR~Hii~QFNkG--~Yd-ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~ 382 (569)
T KOG0346|consen 306 SRCHIIEQFNKG--LYD-IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE 382 (569)
T ss_pred chhhHHHHhhCc--cee-EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCC
Confidence 999999999963 333 567777 1 25799999999999999999
Q ss_pred CcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1426 NPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1426 NP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
++..|+||+||+.|-|.+..+.-|..
T Consensus 383 t~~sYIHRvGRTaRg~n~GtalSfv~ 408 (569)
T KOG0346|consen 383 TVTSYIHRVGRTARGNNKGTALSFVS 408 (569)
T ss_pred chHHHHHhccccccCCCCCceEEEec
Confidence 99999999999999998877655543
No 105
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.74 E-value=4.4e-18 Score=173.66 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccc--cCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1940 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1940 ~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~--~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
++|..||++|.. ...+.++..|+.+++.. ++||||++ |++||||.+|+.||++++|.++.+|..||.|||.||+
T Consensus 3 ~~c~~Il~~l~~---~~~~~~s~~F~~pvd~~~~~~pdY~~~-I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~ 78 (102)
T cd05499 3 KFCEEVLKELMK---PKHSAYNWPFLDPVDPVALNIPNYFSI-IKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCY 78 (102)
T ss_pred HHHHHHHHHHHc---ccCCcccchhcCCCCccccCCCCHHHH-hcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 489999999944 45688999999996555 99999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
.||+++|.+|.+|..|+++|.++|
T Consensus 79 ~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 79 TFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998864
No 106
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.73 E-value=6.5e-18 Score=172.29 Aligned_cols=99 Identities=22% Similarity=0.348 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
+++|+.||++| +..+|+.++..|++. |.+.++||||++ |.+||||.+|+.||+.++|.++.+|..||+|||.||
T Consensus 2 ~~~c~~il~~l---~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~-I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na 77 (102)
T cd05498 2 LKFCSGILKEL---FSKKHKAYAWPFYKPVDPEALGLHDYHDI-IKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNC 77 (102)
T ss_pred hhHHHHHHHHH---HhCCCccccCcccCcCCccccCCCcHHHH-ccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999 445889999999996 556689999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHH
Q 000101 2017 MQFYGFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2017 ~~yn~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
+.||+++|.++.+|..|+++|..++
T Consensus 78 ~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 78 YKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
No 107
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.73 E-value=1.2e-17 Score=173.53 Aligned_cols=106 Identities=18% Similarity=0.271 Sum_probs=96.7
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
++.++..|.+|++.|.... ..+..|+.++.+.++||||.+ |++||||.+|..||++++|.++.+|..||.|||.
T Consensus 5 ~~~~~~~~~~il~~l~~~~-----~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~ 78 (112)
T cd05510 5 QEEFYESLDKVLNELKTYT-----EHSTPFLTKVSKREAPDYYDI-IKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWK 78 (112)
T ss_pred HHHHHHHHHHHHHHHHhcC-----ccccchhcCCChhhcCCHHHH-hcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 4678889999999997764 358899999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCc-HHHHHHHHHHHHHHHHHHHhCCC
Q 000101 2015 GAMQFYGFSH-EVRSEARKVHDLFFDLLKIAFPD 2047 (2239)
Q Consensus 2015 Na~~yn~~~s-ev~~dA~~L~~~f~~~~k~~fP~ 2047 (2239)
||+.||+++| .++.+|..|+++|.+.|+.. ||
T Consensus 79 N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~-~~ 111 (112)
T cd05510 79 NCLLYNSDPSHPLRRHANFMKKKAEHLLKLI-PD 111 (112)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 9999999765 67899999999999988754 66
No 108
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.72 E-value=1.2e-16 Score=206.76 Aligned_cols=315 Identities=21% Similarity=0.274 Sum_probs=211.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCC-eEEEechH-HHHHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGP-HLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~----~~GP-~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
...+|.|-.++-.+.+ +..+|-...+|+|||+.++.++.......+ ..|| .||+||+. +..|..+++.+|
T Consensus 386 ~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf 461 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKF 461 (997)
T ss_pred CCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 3677888888877776 888899999999999999776653322111 2255 58888988 777877777666
Q ss_pred CC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----h-hcccCCceEEEecccccccC--hhhHHHHH
Q 000101 1073 LP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----S-KLSKVDWKYIIIDEAQRMKD--RESVLARD 1143 (2239)
Q Consensus 1073 aP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s-~L~kikWd~VIIDEAHrIKN--~~SKlska 1143 (2239)
+. ++.++..+|..... +....++.+ ..|+|+|++.++.-. . ...-.+..|||+|||++|.. ..-..+++
T Consensus 462 ~k~l~ir~v~vygg~~~~-~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~I 539 (997)
T KOG0334|consen 462 LKLLGIRVVCVYGGSGIS-QQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRI 539 (997)
T ss_pred HhhcCceEEEecCCccHH-HHHHHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchH
Confidence 53 34444444444333 333445555 899999999887542 2 22333577999999999842 22233444
Q ss_pred hhccccceE-EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1144 LDRYRCQRR-LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1144 Lk~Lka~rR-LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
|.+++..+- ++.||| |
T Consensus 540 i~nlrpdrQtvlfSat------------------------------f--------------------------------- 556 (997)
T KOG0334|consen 540 LQNLRPDRQTVLFSAT------------------------------F--------------------------------- 556 (997)
T ss_pred Hhhcchhhhhhhhhhh------------------------------h---------------------------------
Confidence 444433332 222333 0
Q ss_pred hhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1302 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRK 1302 (2239)
|-.+..++..|.+ +|-. +++-. ...+|.. +.+.-.
T Consensus 557 --pr~m~~la~~vl~-~Pve--iiv~~-----~svV~k~-----------------------------------V~q~v~ 591 (997)
T KOG0334|consen 557 --PRSMEALARKVLK-KPVE--IIVGG-----RSVVCKE-----------------------------------VTQVVR 591 (997)
T ss_pred --hHHHHHHHHHhhc-CCee--EEEcc-----ceeEecc-----------------------------------ceEEEE
Confidence 0011122222332 2221 11100 0000000 000001
Q ss_pred HcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHH
Q 000101 1303 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1382 (2239)
Q Consensus 1303 iCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeR 1382 (2239)
+|. ....||..|..||..... ..++||||+....+|.|.+-|...||.+..|||+.+..+|
T Consensus 592 V~~------------------~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR 652 (997)
T KOG0334|consen 592 VCA------------------IENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDR 652 (997)
T ss_pred Eec------------------CchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHH
Confidence 111 023488899999888765 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1383 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1383 qeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
...+++|+++. ..+|++|+++++|||+.....||+||.+--...|.+|.||++|.|.+....+|
T Consensus 653 ~sti~dfK~~~---~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtF 716 (997)
T KOG0334|consen 653 SSTIEDFKNGV---VNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTF 716 (997)
T ss_pred HhHHHHHhccC---ceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEE
Confidence 99999999643 44899999999999999999999999999999999999999999988744443
No 109
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=9.1e-17 Score=189.06 Aligned_cols=303 Identities=19% Similarity=0.205 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHH---HHCCCCce
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELH---KWLPSVSC 1078 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~---KwaPslkv 1078 (2239)
..|..+|..|+.--. .|-|--..-|+|||..+...++......-...-+|.|+|+. +..|...-+. +|+ .+..
T Consensus 115 kIQe~aLPlll~~Pp--~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita 191 (477)
T KOG0332|consen 115 KIQETALPLLLAEPP--QNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTA 191 (477)
T ss_pred hHHHhhcchhhcCCc--hhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeE
Confidence 456677766665222 23355577899999777655554443333334467779988 5666444444 444 3343
Q ss_pred EE-EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcc---cCCceEEEecccccccChh--hH-HHHHhhccc-cc
Q 000101 1079 IY-YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLS---KVDWKYIIIDEAQRMKDRE--SV-LARDLDRYR-CQ 1150 (2239)
Q Consensus 1079 vv-y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~---kikWd~VIIDEAHrIKN~~--SK-lskaLk~Lk-a~ 1150 (2239)
.+ +.|++..| ......+|+|.|++++......|. -.+..++|+|||+.+.+.. .. -.+....+. ..
T Consensus 192 ~yair~sk~~r------G~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~ 265 (477)
T KOG0332|consen 192 SYAIRGSKAKR------GNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQ 265 (477)
T ss_pred EEEecCccccc------CCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcc
Confidence 33 33442222 122345899999999987654433 3367899999999997654 22 223333444 45
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
..|+.|||= -.....|...+
T Consensus 266 QllLFSATf-------------------~e~V~~Fa~ki----------------------------------------- 285 (477)
T KOG0332|consen 266 QLLLFSATF-------------------VEKVAAFALKI----------------------------------------- 285 (477)
T ss_pred eEEeeechh-------------------HHHHHHHHHHh-----------------------------------------
Confidence 577779881 00011111111
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
+|+.....++-+ + +. +..+.+|--.|.+
T Consensus 286 --------vpn~n~i~Lk~e----e------------l~------------------------L~~IkQlyv~C~~---- 313 (477)
T KOG0332|consen 286 --------VPNANVIILKRE----E------------LA------------------------LDNIKQLYVLCAC---- 313 (477)
T ss_pred --------cCCCceeeeehh----h------------cc------------------------ccchhhheeeccc----
Confidence 122111111100 0 00 0001112112221
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
...|+.+|..|..- .. =...||||.....+..|...|...|+.+..|||.+...+|..++++|+
T Consensus 314 --------------~~~K~~~l~~lyg~-~t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr 377 (477)
T KOG0332|consen 314 --------------RDDKYQALVNLYGL-LT-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFR 377 (477)
T ss_pred --------------hhhHHHHHHHHHhh-hh-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHh
Confidence 12366666663322 21 235799999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCC------CcchHHHhhhhhcccCCcce
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKRE 1445 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW------NP~~dlQAiGRAhRIGQkKe 1445 (2239)
.+... +||+|.+.++|||.+.++.||+||.|- ++..|+|||||++|.|.+.-
T Consensus 378 ~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~ 435 (477)
T KOG0332|consen 378 EGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGL 435 (477)
T ss_pred cCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccce
Confidence 86666 899999999999999999999999985 68899999999999996643
No 110
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.72 E-value=5.8e-16 Score=210.99 Aligned_cols=313 Identities=15% Similarity=0.218 Sum_probs=182.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs-- 1075 (2239)
..++++|..++..++. +.+.++...||+|||..++.++.++.. ....+|||+|+. |+.|+..+|.+++..
T Consensus 77 ~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 149 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEKISSLAEKAG 149 (1171)
T ss_pred CCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHHHHHHhcC
Confidence 4789999999887775 778899999999999755544444332 245799999987 788999999998863
Q ss_pred Cce---EEEecchhh--HHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccc
Q 000101 1076 VSC---IYYVGAKDQ--RSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1150 (2239)
Q Consensus 1076 lkv---vvy~Gskd~--Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~ 1150 (2239)
+.+ .+|+|.... +......+..+.++|||+|++++.+....+.. ++++|||||||+|......+-+.|..
T Consensus 150 i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~l---- 224 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKLLKL---- 224 (1171)
T ss_pred CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHHHHH----
Confidence 222 246665433 23334445556799999999999887666655 89999999999996532222222211
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
.|-- ...+..+|.++.. +.. ...+. .+..+..+++.
T Consensus 225 -----lGF~-~e~i~~il~~~~~---~~~-----------------------~~~~~-------~~~~~~~~~~~----- 260 (1171)
T TIGR01054 225 -----LGFS-EELIEKAWKLIRL---RLK-----------------------LYRAL-------HAKKRLELLEA----- 260 (1171)
T ss_pred -----cCCC-HHHHHHHHHHhhh---ccc-----------------------cchHH-------HHHHHHHHHHh-----
Confidence 0100 0001112222211 000 00000 11122222211
Q ss_pred hHhhhhcCCCCceE-EEEEeccC--HHH--HHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1231 RVEDVEGSLPPKVS-IVLRCRMS--AIQ--SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1231 lKkDVekdLP~K~e-~VV~c~MS--~~Q--r~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
+|.+.. ..+.+..| +.. ..++..+. .+.... . ...++.+.
T Consensus 261 --------~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-----~~~v~~-------~--------------~~~~r~I~- 305 (1171)
T TIGR01054 261 --------IPGKKRGCLIVSSATGRPRGKRAKLFRELL-----GFEVGG-------G--------------SDTLRNVV- 305 (1171)
T ss_pred --------hhhccCcEEEEEeCCCCccccHHHHccccc-----ceEecC-------c--------------cccccceE-
Confidence 111111 11111111 100 01111000 000000 0 00001100
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccH---HHHHHHHHHHHHcCCeEEeecCCCCHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT---KLLDILEEYLQWRQLVYRRIDGTTSLEDR 1382 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t---~~LDILed~L~~rGiky~RLDGsts~eeR 1382 (2239)
|.+ +....+...|..+|..+ +..+||||+.. ..++.|..+|...|+++..+||+++
T Consensus 306 ~~~--------------~~~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~---- 364 (1171)
T TIGR01054 306 DVY--------------VEDEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP---- 364 (1171)
T ss_pred EEE--------------EecccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----
Confidence 000 01111234555666543 57899999998 9999999999999999999999986
Q ss_pred HHHHHHHhcCCCCccEEEEe----ccccccccCCCc-CceEEEcCCCCC
Q 000101 1383 ESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPDPN 1426 (2239)
Q Consensus 1383 qeiL~~FNs~ds~~~VfLLS----TrAGGeGLNLqa-ADtVIifDppWN 1426 (2239)
+.++++|.+++. . +||+ |+++++||||+. +++|||||.|--
T Consensus 365 ~~~l~~Fr~G~~--~-vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 365 KEDYEKFAEGEI--D-VLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHHHHHHHcCCC--C-EEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 368999997544 4 4555 699999999999 899999999943
No 111
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.71 E-value=2.3e-17 Score=170.38 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=94.8
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2012 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM 2012 (2239)
++.+.++|..++.+|... +..+..|... |.+.+.||||++ |++||||.+|..||++++|.++.+|..||.||
T Consensus 1 ~~~l~~~~~~il~~l~~~-----~~~s~~F~~PV~~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li 74 (108)
T cd05495 1 PEELRQALMPTLEKLYKQ-----DPESLPFRQPVDPKLLGIPDYFDI-VKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLM 74 (108)
T ss_pred CHHHHHHHHHHHHHHHHc-----CcccchhcCCCCccccCCCcHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 467888999999999655 2467789986 566689999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2013 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2013 ~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
|+||+.||+++|.||++|..|+++|...|+..
T Consensus 75 ~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 75 FDNAWLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 112
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.71 E-value=1.7e-17 Score=168.13 Aligned_cols=94 Identities=15% Similarity=0.274 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhc
Q 000101 1941 RCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFY 2020 (2239)
Q Consensus 1941 kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn 2020 (2239)
+|..|+..|.. +..+..|+.+++..++||||.+ |++||||.+|++||++++|.++.+|..||.|||.||+.||
T Consensus 4 ~c~~il~~l~~------~~~~~~F~~pv~~~~~p~Y~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 76 (97)
T cd05503 4 LCETILDEMEA------HEDAWPFLEPVNTKLVPGYRKI-IKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFN 76 (97)
T ss_pred HHHHHHHHHHc------CCCchhhcCCCCccccCCHHHH-hCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 79999999955 3578899999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 000101 2021 GFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2021 ~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
+++|.+|.+|..|+++|..+|
T Consensus 77 ~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 77 EDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998764
No 113
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.71 E-value=2.6e-17 Score=167.86 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000101 1940 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2019 (2239)
Q Consensus 1940 ~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~y 2019 (2239)
++|..|+-+|+...+ +.+|..-| ..+||||++ |++||||.+|++||+++.|.++++|+.||.|||+||+.|
T Consensus 5 ~~ce~il~~l~~~~~------s~~f~~~p--~~~pdY~~i-Ik~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~y 75 (102)
T cd05501 5 LKCEFLLLKVYCMSK------SGFFISKP--YYIRDYCQG-IKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLF 75 (102)
T ss_pred HHHHHHHHHHHhCcc------cccccCCC--CCCCchHHH-cCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999987643 34554445 499999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000101 2020 YGFSHEVRSEARKVHDLFFDLLKIAF 2045 (2239)
Q Consensus 2020 n~~~sev~~dA~~L~~~f~~~~k~~f 2045 (2239)
|+++ .++..|..|++.|..+++.+|
T Consensus 76 N~~~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 76 YKDD-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 9999 999999999999999999987
No 114
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.71 E-value=2.9e-17 Score=169.31 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhc--ccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHH
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLW--KRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2013 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp--~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~ 2013 (2239)
..++--++.||++|.. +..+..|.... .+.++||||++ |++||||.+|+.||+.++|.++.+|..||.|||
T Consensus 4 ~q~~~~~~~il~~l~~------~~~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~ 76 (107)
T cd05497 4 NQLQYLLKVVLKALWK------HKFAWPFQQPVDAVKLNLPDYHKI-IKTPMDLGTIKKRLENNYYWSASECIQDFNTMF 76 (107)
T ss_pred HHHHHHHHHHHHHHHh------CCcCccccCCCCcccccCCcHHHH-HcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3445456777777754 56799999994 45689999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2014 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2014 ~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
.||+.||+++|.||..|..|+++|.++|+.+
T Consensus 77 ~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 77 TNCYIYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999853
No 115
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.71 E-value=1e-16 Score=207.55 Aligned_cols=112 Identities=15% Similarity=0.296 Sum_probs=102.2
Q ss_pred cccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHH
Q 000101 1931 SAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSD 2008 (2239)
Q Consensus 1931 ~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D 2008 (2239)
+.++...+=+.|..||.+|+.++.. +.|... |....+||||.| |++||||+||..||..++|.++.||++|
T Consensus 216 ~~~~~~~~lk~C~~iLk~l~~~k~a------wpF~~PVD~v~LgLpDY~~I-IK~PMDLgTIK~kL~~~~Y~~~~eF~~D 288 (640)
T KOG1474|consen 216 KSKLTVELLKQCLSILKRLMKHKHA------WPFNEPVDVVKLGLPDYHDI-IKHPMDLGTIKKKLEKGEYKSAEEFAAD 288 (640)
T ss_pred cccccHHHHHHHHHHHHHHHhccCC------CCcCCCcCHHhcCCcchhhh-cCCCccHHHHHhhhcccccCCHHHHHHH
Confidence 3455555556899999999988765 889888 888899999999 9999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000101 2009 VQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTD 2049 (2239)
Q Consensus 2009 ~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~d 2049 (2239)
|.|||+|||+||+++++||.-|..|.++|-.+|+.+++...
T Consensus 289 VRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~ 329 (640)
T KOG1474|consen 289 VRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIE 329 (640)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999988433
No 116
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.70 E-value=4.6e-17 Score=165.82 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
++++|.+|+++|..+ ..+..|+..+.+.++|+||++ |++||||.+|..||+.++|.++.+|..||.|||.||+
T Consensus 2 ~~~~~~~il~~l~~~------~~a~~F~~pv~~~~~p~Y~~~-I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 74 (101)
T cd05509 2 LYTQLKKVLDSLKNH------KSAWPFLEPVDKEEAPDYYDV-IKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCR 74 (101)
T ss_pred hHHHHHHHHHHHHhC------CCchhhcCCCChhhcCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999554 367899999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
.||+++|.+|.+|..|+++|.++|+.
T Consensus 75 ~yN~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 75 LYNGPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999875
No 117
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.70 E-value=1.4e-15 Score=201.78 Aligned_cols=315 Identities=20% Similarity=0.201 Sum_probs=219.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C-
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---P- 1074 (2239)
.|+.||.++++.+.+ +.+.|+.-.||+|||..++..|...+.. .....+|+|-|+. |.......|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~-~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLR-DPSARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhh-CcCccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 599999999988876 7899999999999999999988877653 4445889999977 6666888888886 3
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh------hhhcccCCceEEEecccccccC-hhhHHHHHhhcc
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRY 1147 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD------~s~L~kikWd~VIIDEAHrIKN-~~SKlskaLk~L 1147 (2239)
.+.+..|.|.....++ ..+....++||||+|+++... ...+...+++||||||+|-+.. ..|.+.-.++++
T Consensus 145 ~v~~~~y~Gdt~~~~r--~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL 222 (851)
T COG1205 145 KVTFGRYTGDTPPEER--RAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRL 222 (851)
T ss_pred cceeeeecCCCChHHH--HHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHH
Confidence 4667778887443222 135667899999999998652 1222233589999999999965 455555544444
Q ss_pred -------c-cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhh-hcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000101 1148 -------R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHR 1218 (2239)
Q Consensus 1148 -------k-a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~-F~kPf~~~g~~~~~e~d~l~~ee~~lii~R 1218 (2239)
. ....++.|||- ++..+|... |...|... ..
T Consensus 223 ~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~~~-v~------------------- 262 (851)
T COG1205 223 LRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFEVP-VD------------------- 262 (851)
T ss_pred HHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcceee-cc-------------------
Confidence 1 33568889982 223333322 22222110 00
Q ss_pred HHHhhhhHHhhHhHhhhhcCCCCceEEE-EEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000101 1219 LHQILEPFMLRRRVEDVEGSLPPKVSIV-LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1297 (2239)
Q Consensus 1219 LhklLrPFmLRRlKkDVekdLP~K~e~V-V~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niI 1297 (2239)
+.-.|....++ ++-+........
T Consensus 263 -----------------~~g~~~~~~~~~~~~p~~~~~~~~--------------------------------------- 286 (851)
T COG1205 263 -----------------EDGSPRGLRYFVRREPPIRELAES--------------------------------------- 286 (851)
T ss_pred -----------------CCCCCCCceEEEEeCCcchhhhhh---------------------------------------
Confidence 00011111111 111100000000
Q ss_pred HHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHH----HHHHHcC----Ce
Q 000101 1298 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE----EYLQWRQ----LV 1369 (2239)
Q Consensus 1298 mqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILe----d~L~~rG----ik 1369 (2239)
..-.+...+..++..+...+-++|+|+.+...+..+. ..+...+ ..
T Consensus 287 --------------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~ 340 (851)
T COG1205 287 --------------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDA 340 (851)
T ss_pred --------------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhh
Confidence 0112555666777777888999999999999998886 3444444 55
Q ss_pred EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCC-CcchHHHhhhhhcccCCcceE
Q 000101 1370 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1370 y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW-NP~~dlQAiGRAhRIGQkKeV 1446 (2239)
+....|++..++|.++...|+.++.. ++++|.++-.|+++...|.||.+-.|- .-..+.|+.||++|-+|.--+
T Consensus 341 v~~~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~ 415 (851)
T COG1205 341 VSTYRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLV 415 (851)
T ss_pred eeeccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceE
Confidence 77889999999999999999987665 899999999999999999999999999 789999999999999965444
No 118
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.70 E-value=3.2e-15 Score=197.91 Aligned_cols=106 Identities=19% Similarity=0.148 Sum_probs=89.7
Q ss_pred CCeEEEEEccHHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEE
Q 000101 1343 GHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1419 (2239)
Q Consensus 1343 GhKVLIFSQ~t~~LDILed~L~~---rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVI 1419 (2239)
...+|||+.....++.+...|.. .++.++.|||+++.++|.++++.|..+. +-|||||+++++|||++++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~---rkVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR---RKVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC---eEEEEecchHhhcccccCceEEE
Confidence 56899999999999999999986 4789999999999999999999997532 34799999999999999999999
Q ss_pred EcCCC----CCcch--------------HHHhhhhhcccCCcceEEEEEEehh
Q 000101 1420 IYDPD----PNPKN--------------EEQAVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1420 ifDpp----WNP~~--------------dlQAiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
.++.+ +||.. +.||.||++|.+ +-.+|+|++-
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~---~G~cyrL~t~ 335 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE---PGVCYRLWSE 335 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC---CCEEEEeCCH
Confidence 99876 45554 789999999983 4456777663
No 119
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.70 E-value=7.4e-16 Score=201.66 Aligned_cols=359 Identities=17% Similarity=0.166 Sum_probs=202.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
.+|.++|.++++.+.... .+...+|...||+|||..++.++...+.. .+.+|||||+. |+.||...|.++++ ..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 479999999999987643 33557999999999999998877766642 35799999976 88999999999874 56
Q ss_pred eEEEecch--hhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccC--hhhH-----HHHHhh-cc
Q 000101 1078 CIYYVGAK--DQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD--RESV-----LARDLD-RY 1147 (2239)
Q Consensus 1078 vvvy~Gsk--d~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN--~~SK-----lskaLk-~L 1147 (2239)
+.+++|.. .++.+.+..+..+..+|||+|+..+. +.-.++.+|||||+|...- .... ....+. ..
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~ 292 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKL 292 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhc
Confidence 77777653 34444445566677899999998764 2234678999999998631 1111 111111 22
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
.....+++||||-.. .++.... +.+.. -...+.+.
T Consensus 293 ~~~~~il~SATps~~---s~~~~~~----g~~~~-~~l~~r~~------------------------------------- 327 (679)
T PRK05580 293 ENIPVVLGSATPSLE---SLANAQQ----GRYRL-LRLTKRAG------------------------------------- 327 (679)
T ss_pred cCCCEEEEcCCCCHH---HHHHHhc----cceeE-EEeccccc-------------------------------------
Confidence 334578889999422 1111100 00000 00000000
Q ss_pred hhHhHhhhhcCCCCceEEEEEe----------ccCHHHHHHHHHHHH---hc-CcccCchhHHhhhhcChhhHHHHHHHH
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRC----------RMSAIQSAIYDWIKA---TG-TLRVDPEDEKRRVQKNPIYQAKVYKTL 1293 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c----------~MS~~Qr~LY~~I~~---~~-~l~l~~~~ek~~l~k~~~~~~k~~ksL 1293 (2239)
...+|.. .++.. .++. .+++.+.+ .+ ...+-. .... +..
T Consensus 328 --------~~~~p~v--~~id~~~~~~~~~~~~ls~---~l~~~i~~~l~~g~qvll~~--------nrrG-----y~~- 380 (679)
T PRK05580 328 --------GARLPEV--EIIDMRELLRGENGSFLSP---PLLEAIKQRLERGEQVLLFL--------NRRG-----YAP- 380 (679)
T ss_pred --------cCCCCeE--EEEechhhhhhcccCCCCH---HHHHHHHHHHHcCCeEEEEE--------cCCC-----CCC-
Confidence 0001110 00000 0111 11111111 11 000000 0000 000
Q ss_pred HHHHHHHHHHcCCCC----CCCCC-ccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--
Q 000101 1294 NNRCMELRKTCNHPL----LNYPY-FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-- 1366 (2239)
Q Consensus 1294 ~niImqLRKiCnHP~----L~~p~-~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-- 1366 (2239)
.. +...|.+.. +..+. +........+..||....+...++.+ |.. .|..+....+.+++.|...
T Consensus 381 ---~~-~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C---g~~--~l~~~g~G~e~~~e~l~~~fp 451 (679)
T PRK05580 381 ---FL-LCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPEC---GST--DLVPVGPGTERLEEELAELFP 451 (679)
T ss_pred ---ce-EhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCC---cCC--eeEEeeccHHHHHHHHHHhCC
Confidence 00 011121111 10000 00011112233344322222222222 112 2334445566777777665
Q ss_pred CCeEEeecCCCC--HHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCC---CCc---------chHHH
Q 000101 1367 QLVYRRIDGTTS--LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD---PNP---------KNEEQ 1432 (2239)
Q Consensus 1367 Giky~RLDGsts--~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp---WNP---------~~dlQ 1432 (2239)
++++.++||.++ .+++++++++|.+++.+ ||++|+..+.|+|++.++.|+++|.| ..| ..+.|
T Consensus 452 ~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q 528 (679)
T PRK05580 452 EARILRIDRDTTRRKGALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQ 528 (679)
T ss_pred CCcEEEEeccccccchhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHH
Confidence 889999999986 46799999999976666 78999999999999999999888776 223 57999
Q ss_pred hhhhhcccCCcceEEEEEE
Q 000101 1433 AVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1433 AiGRAhRIGQkKeV~VyrL 1451 (2239)
+.||++|.+....|.+...
T Consensus 529 ~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 529 VAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred HHhhccCCCCCCEEEEEeC
Confidence 9999999887777766544
No 120
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.70 E-value=5.4e-17 Score=166.55 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1937 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1937 ~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
.+.++|..++++|.. +..+..|...++...+||||++ |++||||.+|++||++++|.++.||..||.|||.||
T Consensus 3 ~~~~~~~~il~~l~~------~~~a~~F~~pV~~~~~p~Y~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 75 (104)
T cd05507 3 AWKKAILLVYRTLAS------HRYASVFLKPVTEDIAPGYHSV-VYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNA 75 (104)
T ss_pred HHHHHHHHHHHHHHc------CCCCHhhcCCCCccccCCHHHH-hCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 467889999999855 5569999999988999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2017 MQFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2017 ~~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
+.||+++|.||.+|..|++.|.++|..
T Consensus 76 ~~yN~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 76 IMYNSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998764
No 121
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.68 E-value=1.1e-16 Score=169.78 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=97.9
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccc-cCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1933 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI-ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1933 kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~-~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
-+.+.++.+|..++.+| ++..++.++..|...+.+. .+|+||++ |++||||.+|.+||+++.|.+..+|..||+|
T Consensus 20 ~~~~~~~~~i~~~l~~l---~~~~~~~~~~~F~~pv~~~~~~p~Y~~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 95 (128)
T cd05529 20 HIRDEERERLISGLDKL---LLSLQLEIAEYFEYPVDLRAWYPDYWNR-VPVPMDLETIRSRLENRYYRSLEALRHDVRL 95 (128)
T ss_pred CCCHHHHHHHHHHHHHH---HhcccCcccccccCCCCccccCCcHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 34467777777777776 5668999999999999999 99999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
||.||+.||+++|.++..|+.|+++|..+++.
T Consensus 96 i~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 96 ILSNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998863
No 122
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.68 E-value=1.5e-15 Score=199.54 Aligned_cols=309 Identities=23% Similarity=0.184 Sum_probs=194.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slk 1077 (2239)
+|++.|..++.-.+.- +.|.|+|..||+|||++|...|...+.. ..++++.|||.. |+..-..+|.+|.. +++
T Consensus 31 el~~~qq~av~~~~~~---~~N~li~aPTgsGKTlIA~lai~~~l~~--~~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLLS---DENVLISAPTGSGKTLIALLAILSTLLE--GGGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhccccC---CCcEEEEcCCCCchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 8999999998655432 7889999999999999988877665542 257999999976 77888888986643 788
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccCh------hhHHHHHhhcccc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR------ESVLARDLDRYRC 1149 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN~------~SKlskaLk~Lka 1149 (2239)
+.++.|.-+.... ...+++|+||||+.+-..... .--...++|||||+|.+... .+-+++....-..
T Consensus 106 V~~~TgD~~~~~~-----~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~ 180 (766)
T COG1204 106 VGISTGDYDLDDE-----RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNEL 180 (766)
T ss_pred EEEecCCcccchh-----hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcc
Confidence 9999998664432 235789999999988533211 12236789999999999664 1222222222222
Q ss_pred ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhh
Q 000101 1150 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1229 (2239)
Q Consensus 1150 ~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLR 1229 (2239)
-+.++||||- ++..+|-.|++..... ...+|.-++
T Consensus 181 ~rivgLSATl--------------------pN~~evA~wL~a~~~~-------------------------~~~rp~~l~ 215 (766)
T COG1204 181 IRIVGLSATL--------------------PNAEEVADWLNAKLVE-------------------------SDWRPVPLR 215 (766)
T ss_pred eEEEEEeeec--------------------CCHHHHHHHhCCcccc-------------------------cCCCCcccc
Confidence 4778999992 3334444444321100 011111111
Q ss_pred HhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
|.. |... .+..+.-.. +
T Consensus 216 ~~v-------~~~~-~~~~~~~~~----------------------k--------------------------------- 232 (766)
T COG1204 216 RGV-------PYVG-AFLGADGKK----------------------K--------------------------------- 232 (766)
T ss_pred cCC-------ccce-EEEEecCcc----------------------c---------------------------------
Confidence 110 0000 000000000 0
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH----c---------C---------
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----R---------Q--------- 1367 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~----r---------G--------- 1367 (2239)
.....+...+.+++.+..+.+.-|||||..+......+..|.. . .
T Consensus 233 -------------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 299 (766)
T COG1204 233 -------------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIP 299 (766)
T ss_pred -------------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccc
Confidence 0000122334444555667788899999887766666555542 0 0
Q ss_pred ---------------CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEc-----C-----
Q 000101 1368 ---------------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY-----D----- 1422 (2239)
Q Consensus 1368 ---------------iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIif-----D----- 1422 (2239)
..+..-|.+++.++|.-+=+.|+.+.-+ ||+||...+.|+||+ |++|||- |
T Consensus 300 ~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik---Vlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~ 375 (766)
T COG1204 300 ETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK---VLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGI 375 (766)
T ss_pred cccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCce---EEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCe
Confidence 0122346788999999999999975444 799999999999999 5666654 4
Q ss_pred CCCCcchHHHhhhhhcccCCc
Q 000101 1423 PDPNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1423 ppWNP~~dlQAiGRAhRIGQk 1443 (2239)
-+-++..++|-.|||+|.|=.
T Consensus 376 ~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 376 VDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred EECchhhHhhccCcCCCCCcC
Confidence 334577899999999998854
No 123
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.67 E-value=7.7e-15 Score=194.58 Aligned_cols=106 Identities=19% Similarity=0.203 Sum_probs=89.0
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~---rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
.+..+|||+.....++.+.+.|.. .++.++.+||+++.++|.+++..|..+ .+-|||||+++.+||+++++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G---~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG---RRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC---CeEEEEecchHHhcccccCceEE
Confidence 357899999999999999999986 578899999999999999999999753 23489999999999999999999
Q ss_pred EEcCCC----CCcc--------------hHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1419 IIYDPD----PNPK--------------NEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1419 IifDpp----WNP~--------------~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|.++.+ |||. .+.||.||++|.+ +-.+|+|.+
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t 337 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLYS 337 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEecC
Confidence 997765 3332 5899999999973 556677765
No 124
>PRK14701 reverse gyrase; Provisional
Probab=99.67 E-value=2e-15 Score=209.48 Aligned_cols=338 Identities=16% Similarity=0.251 Sum_probs=194.3
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
|.+++++|..++..++. +...++..+||+|||+..+.+...+. .....+|||+|+. |+.|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~---~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA---LKGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH---hcCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 34699999999988886 77789999999999984333322222 1234799999987 77889999998764
Q ss_pred --CCceEEEecchhhHH--HHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccc
Q 000101 1075 --SVSCIYYVGAKDQRS--RLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1150 (2239)
Q Consensus 1075 --slkvvvy~Gskd~Rk--~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~ 1150 (2239)
.+.+.+++|+..... .....+..+.++|+|+|++.+......+...++++|||||||+|....-.+-+.|.
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~----- 224 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQ----- 224 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhh-----
Confidence 345666777654332 23344556679999999999887654444467999999999998532111111111
Q ss_pred eEEEecCCCCCCCHH-HHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhh
Q 000101 1151 RRLLLTGTPLQNDLK-ELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1229 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~-ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLR 1229 (2239)
|-|- ...+. ..|.++.. .. ...... . . ..+.+|...+.
T Consensus 225 ----llGF--~~e~~~~~~~il~~---~~--------------------~~~~~~--~-~----~~~~~l~~~~~----- 263 (1638)
T PRK14701 225 ----LLGF--YEEIIEKAWKIIYL---KK--------------------QGNIED--A-M----EKREILNKEIE----- 263 (1638)
T ss_pred ----cCCC--hHHHHHHHHHhhhc---cc--------------------ccccch--h-h----hhhhhhhhhhh-----
Confidence 0010 00000 00111110 00 000000 0 0 01122222220
Q ss_pred HhHhhhhcCCCCceEEEEE--eccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLR--CRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~--c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
.+|......+. ..+++... .-..+ .. .+.+.... ..+
T Consensus 264 --------~~~~~~~~ll~~SAT~~~r~~-~~~l~-~~-~l~f~v~~------------------------------~~~ 302 (1638)
T PRK14701 264 --------KIGNKIGCLIVASATGKAKGD-RVKLY-RE-LLGFEVGS------------------------------GRS 302 (1638)
T ss_pred --------hcCCCccEEEEEecCCCchhH-HHHHh-hc-CeEEEecC------------------------------CCC
Confidence 12332222222 22222110 00000 00 00000000 000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHH---HHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~---LDILed~L~~rGiky~RLDGsts~eeRqe 1384 (2239)
....+...++.........|.++|..+ +..+||||+.... ++.|..+|...|+++..+||. |..
T Consensus 303 -----~lr~i~~~yi~~~~~~k~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~ 369 (1638)
T PRK14701 303 -----ALRNIVDVYLNPEKIIKEHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKK 369 (1638)
T ss_pred -----CCCCcEEEEEECCHHHHHHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHH
Confidence 000000001101111123455565543 6789999987664 589999999999999999994 899
Q ss_pred HHHHHhcCCCCccEEEEec----cccccccCCCc-CceEEEcCCCC---CcchHHHhh-------------hhhcccCCc
Q 000101 1385 AIVDFNSHDSDCFIFLLSI----RAAGRGLNLQS-ADTVIIYDPDP---NPKNEEQAV-------------ARAHRIGQK 1443 (2239)
Q Consensus 1385 iL~~FNs~ds~~~VfLLST----rAGGeGLNLqa-ADtVIifDppW---NP~~dlQAi-------------GRAhRIGQk 1443 (2239)
.+++|.+++.+ +|++| +++++|||++. +.+|||||.|- |...+.|.. ||++|-|..
T Consensus 370 ~l~~F~~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 370 GFDLFEEGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred HHHHHHcCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 99999976555 67787 58899999998 99999999998 766666655 999998865
Q ss_pred ce
Q 000101 1444 RE 1445 (2239)
Q Consensus 1444 Ke 1445 (2239)
-+
T Consensus 447 ~~ 448 (1638)
T PRK14701 447 IE 448 (1638)
T ss_pred ch
Confidence 33
No 125
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.67 E-value=1.3e-16 Score=162.50 Aligned_cols=97 Identities=12% Similarity=0.227 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1937 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1937 ~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
.|+.-+..++++|+ +..+..|...+++.++||||.+ |++||||.+|++||+.++|.++++|..||.|||.||
T Consensus 3 ~l~~~L~~~~~~~~-------~~~s~~F~~PV~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na 74 (99)
T cd05508 3 QLSKLLKFALERMK-------QPGAEPFLKPVDLEQFPDYAQY-VFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNA 74 (99)
T ss_pred HHHHHHHHHHHHHh-------CcCcchhcCCCChhhCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34555666666663 4579999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHH
Q 000101 2017 MQFYGFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2017 ~~yn~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
+.||+++|.++..|..|.++|...|
T Consensus 75 ~~YN~~~s~i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 75 IIYNGGDHKLTQAAKAIVKICEQEM 99 (99)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999997643
No 126
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=4.9e-15 Score=188.23 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=90.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecch--hhHHHHHHHHhhcC
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAK--DQRSRLFSQVAALK 1099 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gsk--d~Rk~l~~~i~~~k 1099 (2239)
||...||+|||.+++.++.+.+.. .+.+|||+|.. |+.|+...|.++++ ..+.++++.. .+|.+.+..+..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~~~g~ 76 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKVKNGE 76 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHHHcCC
Confidence 356689999999998888776642 34799999976 88999999998875 4566677643 34445555566678
Q ss_pred ccEEEEehhHHHHhhhhcccCCceEEEeccccccc--ChhhH------HHHHhhccccceEEEecCCCC
Q 000101 1100 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK--DRESV------LARDLDRYRCQRRLLLTGTPL 1160 (2239)
Q Consensus 1100 fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIK--N~~SK------lskaLk~Lka~rRLLLTGTPI 1160 (2239)
.+|||+|+..+.. .-.++.+|||||.|... ..... +......+.....|++||||.
T Consensus 77 ~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 77 ILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred CCEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 8999999987742 23467999999999863 22111 122222334456888999994
No 127
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.67 E-value=2e-16 Score=162.00 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=93.2
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
|++.+.++|.++|.+|... ..+..|... |.+..+||||++ |.+||||.+|+.||+.+.|.++.+|..||+|
T Consensus 1 ~t~~~~~~~~~ii~~l~~~------~~a~~F~~pv~~~~~~~p~Y~~~-I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~l 73 (103)
T cd05500 1 MTKHQHKFLLSSIRSLKRL------KDARPFLVPVDPVKLNIPHYPTI-IKKPMDLGTIERKLKSNVYTSVEEFTADFNL 73 (103)
T ss_pred CCHHHHHHHHHHHHHHHcC------CCChhhcCCCCcccccCCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 5788889999999999643 567899998 557799999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHH
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
||.||+.||+++|.++.+|..|++.|..+|
T Consensus 74 i~~Na~~yN~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 74 MVDNCLTFNGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998764
No 128
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.66 E-value=2.9e-16 Score=163.14 Aligned_cols=102 Identities=17% Similarity=0.280 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
+...|..++++|... ..+..|+..++..++||||++ |++||||.+|..||++++|.++.+|..||.|||+||+
T Consensus 4 lr~~L~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~v-I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 76 (112)
T cd05528 4 LRLFLRDVLKRLASD------KRFNAFTKPVDEEEVPDYYEI-IKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNAL 76 (112)
T ss_pred HHHHHHHHHHHHHhC------CCchhhcCCCCccccCcHHHH-HcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHH
Confidence 444578888888554 456899999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCC----cHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2018 QFYGFS----HEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2018 ~yn~~~----sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
.||+++ |.+|.+|+.|+++|..++...+|
T Consensus 77 ~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 77 EYNPDRDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred HHCCCCCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 999994 79999999999999999999988
No 129
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=8.2e-16 Score=190.01 Aligned_cols=315 Identities=17% Similarity=0.207 Sum_probs=203.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH-HHh----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM-EFK----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Li-e~k----~~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
.-.|.|..++..++. +.+++-|..+|+|||+..++.|...+ ... ...-..+||.|+. |+.|...|+.++.
T Consensus 158 ~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 355778888888887 77889999999999999988765433 332 2223579999987 7888999999987
Q ss_pred --CC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh----cccCCceEEEecccccccChhh---HHHH
Q 000101 1074 --PS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK----LSKVDWKYIIIDEAQRMKDRES---VLAR 1142 (2239)
Q Consensus 1074 --Ps--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~----L~kikWd~VIIDEAHrIKN~~S---Klsk 1142 (2239)
+. +.+..+........ .........++|+|.|+..+...... +.-....++|+|||+++.++.. ++..
T Consensus 234 ~~~~t~~~a~~~~~~~~~~q-k~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~ 312 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQ-KPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLAD 312 (593)
T ss_pred CCCCCchhhhhcccccchhh-ccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHH
Confidence 32 22222222211111 11123345789999999999877543 3444667799999999987611 1111
Q ss_pred Hhhccccc--eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000101 1143 DLDRYRCQ--RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1220 (2239)
Q Consensus 1143 aLk~Lka~--rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLh 1220 (2239)
.+....+. ++=++|||- + .. +..+.
T Consensus 313 I~sac~s~~i~~a~FSat~----------------~------~~-------------------------------VEE~~ 339 (593)
T KOG0344|consen 313 IYSACQSPDIRVALFSATI----------------S------VY-------------------------------VEEWA 339 (593)
T ss_pred HHHHhcCcchhhhhhhccc----------------c------HH-------------------------------HHHHH
Confidence 11111111 111123330 0 00 01111
Q ss_pred HhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000101 1221 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1300 (2239)
Q Consensus 1221 klLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqL 1300 (2239)
+++ +.++ ...+|-. ...+ ++.+.+=
T Consensus 340 ~~i--------~~~~-------~~vivg~--~~sa--------------------------------------~~~V~Qe 364 (593)
T KOG0344|consen 340 ELI--------KSDL-------KRVIVGL--RNSA--------------------------------------NETVDQE 364 (593)
T ss_pred HHh--------hccc-------eeEEEec--chhH--------------------------------------hhhhhhh
Confidence 111 1110 0011111 1100 0000000
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHH-HHcCCeEEeecCCCCH
Q 000101 1301 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL-QWRQLVYRRIDGTTSL 1379 (2239)
Q Consensus 1301 RKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L-~~rGiky~RLDGsts~ 1379 (2239)
++| ....-+|+..+..++.... .-.+|||.|..+-+..|...| ..-++.+..|||.-++
T Consensus 365 -------lvF-----------~gse~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~ 424 (593)
T KOG0344|consen 365 -------LVF-----------CGSEKGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQ 424 (593)
T ss_pred -------hee-----------eecchhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccch
Confidence 000 0112357777777766543 468999999999999999999 7889999999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1380 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1380 eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.+|.+.+++|+.+.. . +|++|++.++|||+.++++||+||.|-.-..|++|+||++|.|+......||
T Consensus 425 ~qrde~~~~FR~g~I--w-vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 425 KQRDETMERFRIGKI--W-VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred hHHHHHHHHHhccCe--e-EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 999999999997433 3 6999999999999999999999999999999999999999999886554443
No 130
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.65 E-value=9.6e-16 Score=166.19 Aligned_cols=153 Identities=27% Similarity=0.372 Sum_probs=111.9
Q ss_pred CChHHHHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPs 1075 (2239)
+||+||.+++.-++..+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 69999999999999887765 78899999999999999998888774 89999997 5899999999888765
Q ss_pred CceEEEecc-----------hhhHHHHHHHHhhcCccEEEEehhHHHHhhhh-------------cccCCceEEEecccc
Q 000101 1076 VSCIYYVGA-----------KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK-------------LSKVDWKYIIIDEAQ 1131 (2239)
Q Consensus 1076 lkvvvy~Gs-----------kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~-------------L~kikWd~VIIDEAH 1131 (2239)
......... ................+++++|+..+...... +....+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 444322111 00000111224456788999999999866322 233478999999999
Q ss_pred cccChhhHHHHHhhccccceEEEecCCCC
Q 000101 1132 RMKDRESVLARDLDRYRCQRRLLLTGTPL 1160 (2239)
Q Consensus 1132 rIKN~~SKlskaLk~Lka~rRLLLTGTPI 1160 (2239)
++.+... ++.+..+...++|+|||||.
T Consensus 157 ~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9965443 55555588889999999995
No 131
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.65 E-value=2.9e-16 Score=163.23 Aligned_cols=96 Identities=14% Similarity=0.248 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000101 1942 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2021 (2239)
Q Consensus 1942 ck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~ 2021 (2239)
.+.|+++|... ..+..|+.++.+.++|+||++ |++||||.+|++||+.++|.++.+|..||.|||.||+.||+
T Consensus 5 l~~ii~~l~~~------~~s~~F~~pv~~~~~p~Y~~~-I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 77 (112)
T cd05511 5 LDEIVNELKNL------PDSWPFHTPVNKKKVPDYYKI-IKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNG 77 (112)
T ss_pred HHHHHHHHHhC------CCchhhcCCCChhhcccHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34667777443 578999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2022 FSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2022 ~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
++|.+|.+|..|+++|.+++...
T Consensus 78 ~~s~i~~~A~~l~~~~~~~~~~~ 100 (112)
T cd05511 78 PDSVYTKKAKEMLELAEELLAER 100 (112)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998865
No 132
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.65 E-value=2.2e-16 Score=160.19 Aligned_cols=96 Identities=17% Similarity=0.313 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
++.|..||++|..+ ..+..|..+ |.+.++|+||++ |.+||||.+|+.||+.+.|.++.+|..||.|||.||
T Consensus 2 ~~~c~~il~~l~~~------~~~~~F~~pv~~~~~~~p~Y~~~-I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 74 (99)
T cd05506 2 MKQCGTLLRKLMKH------KWGWVFNAPVDVVALGLPDYFDI-IKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANA 74 (99)
T ss_pred HHHHHHHHHHHHhC------CCCccccCCCCccccCCCCHHHH-HcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 45899999999654 347788887 556789999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHH
Q 000101 2017 MQFYGFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2017 ~~yn~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
+.||+++|.+|.+|..|+++|..++
T Consensus 75 ~~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 75 MRYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
No 133
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.4e-15 Score=181.01 Aligned_cols=308 Identities=20% Similarity=0.251 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCCCC--ceE
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLPSV--SCI 1079 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL-sQW~~Ef~KwaPsl--kvv 1079 (2239)
..|..|+.=++. +.+.+.-...|+|||.+....++..+.......-+||++|.+.+ .|....+..|.... .+.
T Consensus 51 aIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~ 126 (397)
T KOG0327|consen 51 AIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVH 126 (397)
T ss_pred HHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeee
Confidence 456666655554 78888888899999999887777776544444568999999955 45555566666544 555
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEeccccccc--ChhhHHHHHhhccccc-eEEE
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMK--DRESVLARDLDRYRCQ-RRLL 1154 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIK--N~~SKlskaLk~Lka~-rRLL 1154 (2239)
.+.|....+... ..+.....+|++.|++.+..- ...|......+.|+|||+.++ +...+++.....++.+ ..++
T Consensus 127 ~~igg~~~~~~~-~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l 205 (397)
T KOG0327|consen 127 ACIGGTNVRRED-QALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVL 205 (397)
T ss_pred eecCcccchhhh-hhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhhee
Confidence 556654444332 224445679999999888643 335666678999999999985 4556677777777655 4566
Q ss_pred ecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhh
Q 000101 1155 LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1234 (2239)
Q Consensus 1155 LTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkD 1234 (2239)
+|||- ..|+..+ .+.| ...|
T Consensus 206 ~SAT~----p~~vl~v-----------t~~f---~~~p------------------------------------------ 225 (397)
T KOG0327|consen 206 LSATM----PSDVLEV-----------TKKF---MREP------------------------------------------ 225 (397)
T ss_pred ecccC----cHHHHHH-----------HHHh---ccCc------------------------------------------
Confidence 78882 1111000 0000 0000
Q ss_pred hhcCCCCceEEEEE-eccC-HHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000101 1235 VEGSLPPKVSIVLR-CRMS-AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1312 (2239)
Q Consensus 1235 VekdLP~K~e~VV~-c~MS-~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p 1312 (2239)
+.+.++ -.++ +.++.+|-.
T Consensus 226 --------v~i~vkk~~ltl~gikq~~i~--------------------------------------------------- 246 (397)
T KOG0327|consen 226 --------VRILVKKDELTLEGIKQFYIN--------------------------------------------------- 246 (397)
T ss_pred --------eEEEecchhhhhhheeeeeee---------------------------------------------------
Confidence 000000 0000 000000000
Q ss_pred CccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcC
Q 000101 1313 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1392 (2239)
Q Consensus 1313 ~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ 1392 (2239)
..+ ..|+..|..+.. .-..++|||+...-++.|.+.|..+++....+||.+...+|..++.+|+.+
T Consensus 247 ----v~k------~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g 312 (397)
T KOG0327|consen 247 ----VEK------EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG 312 (397)
T ss_pred ----ccc------cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC
Confidence 000 016677766666 345789999999999999999999999999999999999999999999987
Q ss_pred CCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1393 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1393 ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
.+. +||+|+..++|||++.++.||+||.|-|...|.+|+||++|.|.+.- ++.+++
T Consensus 313 ssr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~--~in~v~ 368 (397)
T KOG0327|consen 313 SSR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGV--AINFVT 368 (397)
T ss_pred Cce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCce--eeeeeh
Confidence 776 89999999999999999999999999999999999999999996533 344443
No 134
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=1.2e-13 Score=180.78 Aligned_cols=415 Identities=14% Similarity=0.203 Sum_probs=235.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHH---HHHHHHHHCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVN---WKSELHKWLPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQ---W~~Ef~KwaPs 1075 (2239)
..++-|+.|.--|. .|-|.-..||.|||++++..+..... .+ ..++||+|+. |..+ |...|.+|+ +
T Consensus 82 ~~ydvQliGg~~Lh------~G~Iaem~TGeGKTL~a~Lpa~~~al-~G--~~V~VvTpn~yLA~qd~e~m~~l~~~l-G 151 (896)
T PRK13104 82 RHFDVQLIGGMVLH------EGNIAEMRTGEGKTLVATLPAYLNAI-SG--RGVHIVTVNDYLAKRDSQWMKPIYEFL-G 151 (896)
T ss_pred CcchHHHhhhhhhc------cCccccccCCCCchHHHHHHHHHHHh-cC--CCEEEEcCCHHHHHHHHHHHHHHhccc-C
Confidence 34444888765442 35588899999999988766553332 22 3589999988 5555 555565555 4
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHH----HHhhhhcc-----cCCceEEEecccccccChhhHHHHHhhc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFI----MYDRSKLS-----KVDWKYIIIDEAQRMKDRESVLARDLDR 1146 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L----~kD~s~L~-----kikWd~VIIDEAHrIKN~~SKlskaLk~ 1146 (2239)
+.+.++.|+.....+. .....+|+++|.+.| .++.-.+. ...+.++||||||.|.= ..
T Consensus 152 Ltv~~i~gg~~~~~r~----~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI---------De 218 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQ----EAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI---------DE 218 (896)
T ss_pred ceEEEEeCCCCHHHHH----HHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh---------hc
Confidence 6666666654322221 122679999999998 33321121 14789999999999841 11
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhh----cCcc-------cC-----------C-hHHHHhhhcCCcccCCCCCCCC
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLL----LPEV-------FD-----------N-RKAFHDWFSQPFQKEGPTHNAD 1203 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFL----lP~i-------F~-----------s-~k~F~e~F~kPf~~~g~~~~~e 1203 (2239)
+..-|++||.+- ...++|..++.+ ..+. |. . -..+.+.| +...+.....+
T Consensus 219 --ArtPLIISg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~---~~~~~il~~~~ 291 (896)
T PRK13104 219 --ARTPLIISGAAE--DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEEL---LTKAKLLDPGE 291 (896)
T ss_pred --cCCceeeeCCCc--cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHH---HHhCCccCCcc
Confidence 223467787643 224555544433 2220 00 0 00010000 00000000000
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhH
Q 000101 1204 DDWLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDE 1275 (2239)
Q Consensus 1204 ~d~l~~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~e 1275 (2239)
.+.........+.+...|+.. ++.+-+.-|.. +....+|. +.| .+..-+.+.|.....+.+....
T Consensus 292 --~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~---dg~V~iVD-e~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~- 364 (896)
T PRK13104 292 --SLYHASNIMLMHHVNAALKAHAMFHRDIDYIVK---DNQVVIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVPIQNEN- 364 (896)
T ss_pred --cccCchhhhHHHHHHHHHHHHHHhcCCCceEEE---CCEEEEEE-CCCCCcCCCCCcChHHHHHHHHHcCCCCCCCc-
Confidence 000001111223333334332 33333222221 11112221 222 2334444555443333222111
Q ss_pred HhhhhcChhhH--HHHHH-------HHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHh
Q 000101 1276 KRRVQKNPIYQ--AKVYK-------TLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQR 1341 (2239)
Q Consensus 1276 k~~l~k~~~~~--~k~~k-------sL~niImqLRKiCnHP~L~~p~~~~~-----s~d~Li~~SGKLelLdrIL~kLka 1341 (2239)
..+..- .++ -+.|. .....-..+.++-+.+.+..|..... ..........|+..+..-+.++..
T Consensus 365 -~t~AsI-T~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~ 442 (896)
T PRK13104 365 -QTLASI-TFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV 442 (896)
T ss_pred -eeeeee-hHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh
Confidence 000000 000 00000 01112345566655555444432211 111122344688888888888999
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCc-------
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS------- 1414 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqa------- 1414 (2239)
.|..|||||..+...+.|..+|...|+++..|+|.....+|..+.+.|+.+ . |+|+|+.+|+|+|+.=
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIATNmAGRGtDI~Lggn~~~~ 517 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIATNMAGRGTDIVLGGSLAAD 517 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEeccCccCCcceecCCchhhh
Confidence 999999999999999999999999999999999999999999999999863 3 8999999999999762
Q ss_pred -------------------------------CceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhh
Q 000101 1415 -------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1460 (2239)
Q Consensus 1415 -------------------------------ADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s 1460 (2239)
-=+||.-..+-|-..+.|-.||++|-|......+| ++.|+.+..
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~--lSleD~l~~ 592 (896)
T PRK13104 518 LANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY--LSLEDNLMR 592 (896)
T ss_pred hhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE--EEcCcHHHH
Confidence 23788899999999999999999999988776554 244555443
No 135
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.64 E-value=4.4e-16 Score=158.32 Aligned_cols=91 Identities=10% Similarity=0.264 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
...|+.++++|.. +..+..|+....+.++||||++ |++||||.+|++||++++|.++++|..||.|||.||+.
T Consensus 3 ~~~l~~il~~l~~------~~~~~~F~~pVd~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 75 (98)
T cd05512 3 EVLLRKTLDQLQE------KDTAEIFSEPVDLSEVPDYLDH-IKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLA 75 (98)
T ss_pred HHHHHHHHHHHHh------CCCchhhcCCCCccccCCHHHH-hcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3457777777744 6788999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHH
Q 000101 2019 FYGFSHEVRSEARKVHDL 2036 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~ 2036 (2239)
||+++|.+|++|..|++.
T Consensus 76 yN~~~s~~~~~A~~l~~~ 93 (98)
T cd05512 76 YNAKDTIFYRAAVRLRDQ 93 (98)
T ss_pred HCCCCCHHHHHHHHHHHh
Confidence 999999999999999874
No 136
>PRK09694 helicase Cas3; Provisional
Probab=99.63 E-value=1.1e-13 Score=183.95 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC---CeEEeecCCCCHHHH----HHHHHHHh-cCCCCccEEEEe
Q 000101 1331 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDR----ESAIVDFN-SHDSDCFIFLLS 1402 (2239)
Q Consensus 1331 lLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG---iky~RLDGsts~eeR----qeiL~~FN-s~ds~~~VfLLS 1402 (2239)
++..++.. ...|++|||||+.+..+..+.+.|...+ +.+..+||.++..+| .++++.|. ++......|||+
T Consensus 549 ~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 549 LLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred HHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 34444433 3468899999999999999999998765 678999999999999 56788894 322222358999
Q ss_pred ccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCc
Q 000101 1403 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1403 TrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQk 1443 (2239)
|.+...|||+ ++|+||....| ...++||+||+||.|.+
T Consensus 628 TQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 628 TQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred Ccchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9999999999 68999987666 56899999999999874
No 137
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.63 E-value=5.2e-16 Score=157.82 Aligned_cols=92 Identities=18% Similarity=0.274 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
+.+.|.+|+++|.... .+..|+........||||++ |++||||.+|.+||++++|.++.+|..||.|||.||+
T Consensus 2 l~~~l~~il~~l~~~~------~~~~F~~PV~~~~~pdY~~v-Ik~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 74 (98)
T cd05513 2 LQKALEQLIRQLQRKD------PHGFFAFPVTDFIAPGYSSI-IKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAM 74 (98)
T ss_pred HHHHHHHHHHHHHcCC------ccccccCcCCccccccHHHH-HcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567889999886542 36689998888899999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDL 2036 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~ 2036 (2239)
.||+++|.+|++|..|...
T Consensus 75 ~yN~~~s~~~~~A~~L~~~ 93 (98)
T cd05513 75 KYNKPDTIYYKAAKKLLHS 93 (98)
T ss_pred HHCCCCCHHHHHHHHHHHh
Confidence 9999999999999999754
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.63 E-value=1.6e-15 Score=155.98 Aligned_cols=120 Identities=31% Similarity=0.452 Sum_probs=110.7
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc
Q 000101 1327 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1406 (2239)
Q Consensus 1327 GKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAG 1406 (2239)
.|+..+..++.++...+.++||||.....++.+.++|...++.+..++|+++..+|..+++.|+.++ ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 5888888888887767899999999999999999999999999999999999999999999999754 4588899999
Q ss_pred ccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1407 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1407 GeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
++|+|++.+++||+++++|++..+.|++||++|.|+++.|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998777654
No 139
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.63 E-value=8.3e-16 Score=152.15 Aligned_cols=97 Identities=20% Similarity=0.365 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
...|..++++|.... +.++..|..+|++..+|+||++ |++||||.+|++||+.++|.++.+|..||.|||.||+.
T Consensus 2 ~~~~~~i~~~l~~~~----~~~~~~F~~~~~~~~~~~Y~~~-i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 76 (99)
T cd04369 2 KKKLRSLLDALKKLK----RDLSEPFLEPVDPKEAPDYYEV-IKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKT 76 (99)
T ss_pred HHHHHHHHHHHHhhc----ccccHHHhcCCChhcCCCHHHH-HhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 357999999997664 8899999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH
Q 000101 2019 FYGFSHEVRSEARKVHDLFFDL 2040 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~~ 2040 (2239)
||+.+|.++..|..|+.+|..+
T Consensus 77 ~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 77 YNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 140
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=9.3e-13 Score=171.83 Aligned_cols=422 Identities=14% Similarity=0.176 Sum_probs=226.8
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HH---HHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VN---WKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL-sQ---W~~Ef~Kwa 1073 (2239)
+...++-|+.|.--| +.|.|.=..||.|||+++...+..... ....+-||+|+..| .+ |...+-+++
T Consensus 78 g~~~~dvQlig~l~l------~~G~iaEm~TGEGKTLvA~l~a~l~al---~G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 78 GLRPFDVQIIGGIVL------HEGNIAEMKTGEGKTLTATLPVYLNAL---TGKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCCchhHHHHHHHH------hcCCcccccCCCCCcHHHHHHHHHHHH---cCCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 334555688886544 234577799999999997554433332 23467888998855 33 666666665
Q ss_pred CCCceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHh---------hhhcccCCceEEEecccccccChhhHHHH
Q 000101 1074 PSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYD---------RSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1074 Pslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD---------~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
++.+.+..+. ...|+.. ...+|+-+|-..|.-| ...+....+.++||||++.+.=
T Consensus 149 -Gl~vg~i~~~~~~~~r~~~------y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLi------- 214 (796)
T PRK12906 149 -GLTVGLNLNSMSPDEKRAA------YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILI------- 214 (796)
T ss_pred -CCeEEEeCCCCCHHHHHHH------hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheee-------
Confidence 4666666554 2333322 2567877775554322 1122234789999999998741
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChH------HHHhhhcCCcccCCCCCCCChhhHH--------
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRK------AFHDWFSQPFQKEGPTHNADDDWLE-------- 1208 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k------~F~e~F~kPf~~~g~~~~~e~d~l~-------- 1208 (2239)
. .+..-|++||.+- ...++|..++-+-..+-.... .....|..--... ...-.+.....
T Consensus 215 --D--eartPLiisg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k-~v~lte~G~~~~e~~~~i~ 287 (796)
T PRK12906 215 --D--EARTPLIISGQAE--KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTK-TISLTEQGIRKAEKLFGLD 287 (796)
T ss_pred --c--cCCCceecCCCCC--cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccC-ceeecHHHHHHHHHHcCCc
Confidence 1 1223466776652 334455444332221110000 0000000000000 00000000000
Q ss_pred ---HHHHHHHHHHHHHhhhh-HHhhHhHhhhhcCCCCceEEEEE------eccCHHHHHHHHHHHHhcCcccCchhHHh-
Q 000101 1209 ---TEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLR------CRMSAIQSAIYDWIKATGTLRVDPEDEKR- 1277 (2239)
Q Consensus 1209 ---~ee~~lii~RLhklLrP-FmLRRlKkDVekdLP~K~e~VV~------c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~- 1277 (2239)
........+.+...|+. +++.+-+.-+.. +....+|. .+-..+..-+.+.+.....+.+.......
T Consensus 288 ~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~---d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a 364 (796)
T PRK12906 288 NLYDSENTALAHHIDQALRANYIMLKDIDYVVQ---DGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLA 364 (796)
T ss_pred cccCchhhhHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeee
Confidence 00000112223333333 233333322222 12222221 01112334444444443333322211100
Q ss_pred -----hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hhh-HhhcccHHHHHHHHHHHHHhcCCeEE
Q 000101 1278 -----RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDF-LVKSCGKLWILDRILIKLQRTGHRVL 1347 (2239)
Q Consensus 1278 -----~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s----~d~-Li~~SGKLelLdrIL~kLkatGhKVL 1347 (2239)
...+......+........-..++++-+.+.+..|...... .+. ......|+..|...+..+...+..||
T Consensus 365 ~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvL 444 (796)
T PRK12906 365 TITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVL 444 (796)
T ss_pred eehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 00000000000000111223456676666655544432211 111 12234588888888888888999999
Q ss_pred EEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCC---cCc-----eEE
Q 000101 1348 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ---SAD-----TVI 1419 (2239)
Q Consensus 1348 IFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLq---aAD-----tVI 1419 (2239)
|||..+...+.|...|...|+++..|+|.....++..+...|.. +. |+|+|+.+|+|+|+. .+. +||
T Consensus 445 I~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~---VtIATnmAGRGtDI~l~~~V~~~GGLhVI 519 (796)
T PRK12906 445 VGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA---VTIATNMAGRGTDIKLGPGVKELGGLAVI 519 (796)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce---EEEEeccccCCCCCCCCcchhhhCCcEEE
Confidence 99999999999999999999999999999886666666665553 22 899999999999995 677 999
Q ss_pred EcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1420 IYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1420 ifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
.++.|-|...|.|+.||++|.|.......| ++.++.+.
T Consensus 520 ~te~pes~ri~~Ql~GRtGRqG~~G~s~~~--~sleD~l~ 557 (796)
T PRK12906 520 GTERHESRRIDNQLRGRSGRQGDPGSSRFY--LSLEDDLM 557 (796)
T ss_pred eeecCCcHHHHHHHhhhhccCCCCcceEEE--EeccchHH
Confidence 999999999999999999999988766443 23344443
No 141
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.59 E-value=1.3e-13 Score=182.09 Aligned_cols=305 Identities=19% Similarity=0.247 Sum_probs=211.3
Q ss_pred CChHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-HHHHHHHHHCCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-NWKSELHKWLPSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs-QW~~Ef~KwaPsl 1076 (2239)
+-.|-|+.+++-+..=..... .-+||-++|-|||=.|+-.+-. .-...+-+.|+||+.+|. |-.+.|...+.++
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFk---AV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~f 670 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFK---AVMDGKQVAVLVPTTLLAQQHYETFKERFAGF 670 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHH---HhcCCCeEEEEcccHHhHHHHHHHHHHHhcCC
Confidence 566889999988887555443 3499999999999887543321 123446799999999665 4555566655544
Q ss_pred ceEE----EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccc-e
Q 000101 1077 SCIY----YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ-R 1151 (2239)
Q Consensus 1077 kvvv----y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~-r 1151 (2239)
-+-+ -.-+..+.+.+...+..+..||||.|+..|.++..+ .+..+|||||=||+. -+.-..|+.+++. .
T Consensus 671 PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFG---Vk~KEkLK~Lr~~VD 744 (1139)
T COG1197 671 PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFG---VKHKEKLKELRANVD 744 (1139)
T ss_pred CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcC---ccHHHHHHHHhccCc
Confidence 3322 334566777888889999999999999998877543 357899999999984 3445567777665 4
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.|-||||||..+|.= +|.. ++.|.-+
T Consensus 745 vLTLSATPIPRTL~M--sm~G-------------------------------------------iRdlSvI--------- 770 (1139)
T COG1197 745 VLTLSATPIPRTLNM--SLSG-------------------------------------------IRDLSVI--------- 770 (1139)
T ss_pred EEEeeCCCCcchHHH--HHhc-------------------------------------------chhhhhc---------
Confidence 788999999887531 1100 0111111
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
.-||.....|..-..+..
T Consensus 771 ------~TPP~~R~pV~T~V~~~d-------------------------------------------------------- 788 (1139)
T COG1197 771 ------ATPPEDRLPVKTFVSEYD-------------------------------------------------------- 788 (1139)
T ss_pred ------cCCCCCCcceEEEEecCC--------------------------------------------------------
Confidence 123332222221111100
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHHHHH
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDF 1389 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--Giky~RLDGsts~eeRqeiL~~F 1389 (2239)
...+-..|+.++. .|..|-.-++.+..+..+...|+.. ..++...||.|+..+-++++..|
T Consensus 789 ----------------~~~ireAI~REl~-RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F 851 (1139)
T COG1197 789 ----------------DLLIREAILRELL-RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDF 851 (1139)
T ss_pred ----------------hHHHHHHHHHHHh-cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHH
Confidence 0011123344444 3556766678888888888888765 56788999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCCcCceEEEcCCC-CCcchHHHhhhhhcccCCcceEEEE
Q 000101 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1390 Ns~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp-WNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
-+++-+ +|+||-.-..|||+++|||+|+-+.+ +--++..|--||++|-..+--++.+
T Consensus 852 ~~g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl 909 (1139)
T COG1197 852 YNGEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFL 909 (1139)
T ss_pred HcCCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEe
Confidence 976555 79999999999999999999999988 7889999999999997755444433
No 142
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.59 E-value=1.8e-15 Score=185.94 Aligned_cols=107 Identities=18% Similarity=0.273 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
-+.|+.++..+....+.+|+.+..+|+.+|+++++|+||.+ |+.||||.+|+.+|+.++|.++.+|+.||.|||+||+.
T Consensus 144 ~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~i-Ik~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~ 222 (371)
T COG5076 144 YADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEI-IKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKL 222 (371)
T ss_pred HHHHHHHHHHHHHhhcccccccccccccCCccccCCChhee-ecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 44688888888888999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2019 FYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
||.++|.||.+|..|.++|...++...+
T Consensus 223 yN~~~s~v~~~a~~l~~~~~~~i~~~~~ 250 (371)
T COG5076 223 YNGPDSSVYVDAKELEKYFLKLIEEIPE 250 (371)
T ss_pred ccCCCcchhhhhHHHHHHHHHHHHhccc
Confidence 9999999999999999999999997666
No 143
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=1.5e-12 Score=170.48 Aligned_cols=409 Identities=17% Similarity=0.244 Sum_probs=232.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHH---HHHHHHHHCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVN---WKSELHKWLPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQ---W~~Ef~KwaPs 1075 (2239)
..++-|+-|.--| +.|.|.-..||.|||++++..+. +....+ ..+-||+|+. |..+ |...+-+++ +
T Consensus 81 ~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~-l~aL~G--~~V~IvTpn~yLA~rd~e~~~~l~~~L-G 150 (830)
T PRK12904 81 RHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAY-LNALTG--KGVHVVTVNDYLAKRDAEWMGPLYEFL-G 150 (830)
T ss_pred CCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHH-HHHHcC--CCEEEEecCHHHHHHHHHHHHHHHhhc-C
Confidence 4445588886433 23558889999999998765543 222222 2466999988 4455 444444444 5
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hh-------hcccCCceEEEecccccccChhhHHHHHhhc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RS-------KLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1146 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s-------~L~kikWd~VIIDEAHrIKN~~SKlskaLk~ 1146 (2239)
+.+.+..|......+. .....+|+++|...|--| +. .+....+.++||||++.|. +..
T Consensus 151 lsv~~i~~~~~~~er~----~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL---------IDe 217 (830)
T PRK12904 151 LSVGVILSGMSPEERR----EAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL---------IDE 217 (830)
T ss_pred CeEEEEcCCCCHHHHH----HhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe---------ecc
Confidence 6666666643322211 112479999999888322 11 1234578999999999984 111
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhhcCcccCCh------------------HHHHhhhcCCcccCCCCCCCChhhHH
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR------------------KAFHDWFSQPFQKEGPTHNADDDWLE 1208 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~------------------k~F~e~F~kPf~~~g~~~~~e~d~l~ 1208 (2239)
+..-|++||.+- ...++|..++-+-..+-... ....+.|.. +. +.
T Consensus 218 --ArtpLiiSg~~~--~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~-----------~~--ly 280 (830)
T PRK12904 218 --ARTPLIISGPAE--DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGI-----------EN--LY 280 (830)
T ss_pred --CCCceeeECCCC--cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCC-----------cc--cc
Confidence 223466777643 22456655554433221110 001111110 00 00
Q ss_pred HHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHHh---
Q 000101 1209 TEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR--- 1277 (2239)
Q Consensus 1209 ~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek~--- 1277 (2239)
........+.+...|+.. ++.+-+.-+.. +....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 281 ~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~---dg~V~ivD-e~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~I 356 (830)
T PRK12904 281 DPENIALVHHLNQALRAHELFKRDVDYIVK---DGEVVIVD-EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASI 356 (830)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeee
Confidence 011111233334444432 33333333222 12222222 222 2333444444443333222211100
Q ss_pred ---hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hhhH-hhcccHHHHHHHHHHHHHhcCCeEEEE
Q 000101 1278 ---RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDFL-VKSCGKLWILDRILIKLQRTGHRVLLF 1349 (2239)
Q Consensus 1278 ---~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s----~d~L-i~~SGKLelLdrIL~kLkatGhKVLIF 1349 (2239)
...+......+...+.......|.++-+-+.+..|...... .+.+ .....|+..+...+.++...|..||||
T Consensus 357 t~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIf 436 (830)
T PRK12904 357 TFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVG 436 (830)
T ss_pred eHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 00000000000001111223466777666655544432111 1111 233468999999998888899999999
Q ss_pred EccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcC--------------
Q 000101 1350 STMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA-------------- 1415 (2239)
Q Consensus 1350 SQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA-------------- 1415 (2239)
|......+.|..+|...|+++..|+|. ..+|+..|..|....+. |+|+|+.+|+|+|+.-.
T Consensus 437 t~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~ 511 (830)
T PRK12904 437 TVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNMAGRGTDIKLGGNPEMLAAALLEEE 511 (830)
T ss_pred eCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecccccCCcCccCCCchhhhhhhhhhhh
Confidence 999999999999999999999999995 67999999999864444 89999999999997743
Q ss_pred ------------------------ceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1416 ------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1416 ------------------------DtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
=+||.-..+-|-..+.|..||++|-|.......|. +.|+.+.
T Consensus 512 ~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l--SleD~l~ 577 (830)
T PRK12904 512 TEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL--SLEDDLM 577 (830)
T ss_pred hhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE--EcCcHHH
Confidence 37888899999999999999999999887765543 3454443
No 144
>COG4889 Predicted helicase [General function prediction only]
Probab=99.56 E-value=8.2e-15 Score=183.59 Aligned_cols=156 Identities=22% Similarity=0.244 Sum_probs=102.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa--Ps 1075 (2239)
.+|||||..+++-..+.+..+.+|=|-..+|+|||.+++-+...+.. ..+|++||.- ||+|-.+|...-. +-
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCccc
Confidence 48999999999999999988888878888999999999988877654 5789999964 8877444432211 11
Q ss_pred CceEEEecchhhH------------------HHHHHH----HhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccc
Q 000101 1076 VSCIYYVGAKDQR------------------SRLFSQ----VAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQ 1131 (2239)
Q Consensus 1076 lkvvvy~Gskd~R------------------k~l~~~----i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAH 1131 (2239)
-...++...+-.| +.++.. .+..+--||++||+.+-.- .....--.|++|||||||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH 314 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh
Confidence 1112221111111 111111 2334556999999998653 334455689999999999
Q ss_pred cccC------hhhHHHHHh--hccccceEEEecCCC
Q 000101 1132 RMKD------RESVLARDL--DRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1132 rIKN------~~SKlskaL--k~Lka~rRLLLTGTP 1159 (2239)
|--. ..+..++.- ..+++..||.+||||
T Consensus 315 RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred ccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 9632 222222221 134677899999998
No 145
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=2.5e-14 Score=170.81 Aligned_cols=321 Identities=21% Similarity=0.259 Sum_probs=213.7
Q ss_pred hhhhHhhhhhhccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH-HhCCCCCeEEEe
Q 000101 979 YSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME-FKGNYGPHLIIV 1057 (2239)
Q Consensus 979 y~lah~i~E~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie-~k~~~GP~LIVV 1057 (2239)
|.+-.+|.++...+| .|.|.+.+..++. +...+--.-||+|||...+..+...+. .....-+.||+.
T Consensus 30 ~~v~raI~kkg~~~p--------tpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralils 97 (529)
T KOG0337|consen 30 YKVLRAIHKKGFNTP--------TPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILS 97 (529)
T ss_pred HHHHHHHHHhhcCCC--------Cchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeecc
Confidence 345556666666555 3567777665554 333333456999999988876655443 222334789999
Q ss_pred chH-HHHHHHHHHHHHCC--CCceE-EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccc
Q 000101 1058 PNA-VLVNWKSELHKWLP--SVSCI-YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQ 1131 (2239)
Q Consensus 1058 P~S-LLsQW~~Ef~KwaP--slkvv-vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAH 1131 (2239)
|+. |..|-.+-++.+.. .+... +|.|..-+ +++ . ....+.+|||+|++.+..... .|.-....|||+||++
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~e-eqf-~-~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIE-EQF-I-LLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchHH-HHH-H-HhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 987 66665444444432 34444 44444322 222 1 233478999999998865432 2444567899999999
Q ss_pred ccc--ChhhHHHHHhhccccce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000101 1132 RMK--DRESVLARDLDRYRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1208 (2239)
Q Consensus 1132 rIK--N~~SKlskaLk~Lka~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~ 1208 (2239)
+|- .+.-.+...|.+++..+ .+++|||- .+.| . +|.+ .|
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~l------v------------~fak--------aG----------- 216 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRDL------V------------DFAK--------AG----------- 216 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chhh------H------------HHHH--------cc-----------
Confidence 994 36678888898886554 78889992 1111 1 1111 00
Q ss_pred HHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHH
Q 000101 1209 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1288 (2239)
Q Consensus 1209 ~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k 1288 (2239)
+..|.++| -||+. ..++.-
T Consensus 217 -------------l~~p~lVR---ldvet------------kise~l--------------------------------- 235 (529)
T KOG0337|consen 217 -------------LVPPVLVR---LDVET------------KISELL--------------------------------- 235 (529)
T ss_pred -------------CCCCceEE---eehhh------------hcchhh---------------------------------
Confidence 11111111 01110 000000
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCC
Q 000101 1289 VYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1368 (2239)
Q Consensus 1289 ~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGi 1368 (2239)
+++. +.+....|...|..|+..... .++.|||+....+++++...|+..|+
T Consensus 236 ----------k~~f------------------~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~ 286 (529)
T KOG0337|consen 236 ----------KVRF------------------FRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGG 286 (529)
T ss_pred ----------hhhe------------------eeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCC
Confidence 0000 011223377777777776543 56899999999999999999999999
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcce
Q 000101 1369 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1445 (2239)
Q Consensus 1369 ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKe 1445 (2239)
....+.|++....|..-+.+|+..... +|++|++|.+|+|++-.|+||+||.|-.+..|.+|+||+.|.|.+..
T Consensus 287 ~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~ 360 (529)
T KOG0337|consen 287 EGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGR 360 (529)
T ss_pred CccccccccChHhhhhccccccCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccce
Confidence 999999999999999999999865444 89999999999999999999999999999999999999999997644
No 146
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.55 E-value=8.7e-14 Score=150.20 Aligned_cols=166 Identities=27% Similarity=0.284 Sum_probs=118.3
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP-~SLLsQW~~Ef~KwaPsl 1076 (2239)
..++++||.+++.+++... .++++..++|+|||..++.++...+... ...++||++| ..++.+|..++..+++..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~~-~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKRG-KGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhccc-CCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3589999999999888521 6889999999999998888877766532 2468999999 558899999999998763
Q ss_pred ---ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccC--hhhHHHHHhhcc-c
Q 000101 1077 ---SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRY-R 1148 (2239)
Q Consensus 1077 ---kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN--~~SKlskaLk~L-k 1148 (2239)
....+.+... ...........++|+++||+.+...... +...+|++|||||+|.+.+ ........+..+ .
T Consensus 82 ~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~ 159 (201)
T smart00487 82 GLKVVGLYGGDSK--REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPK 159 (201)
T ss_pred CeEEEEEeCCcch--HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCc
Confidence 2333444322 2222334444459999999999877554 4556789999999999985 333444444444 5
Q ss_pred cceEEEecCCCCCCCHHHHHH
Q 000101 1149 CQRRLLLTGTPLQNDLKELWS 1169 (2239)
Q Consensus 1149 a~rRLLLTGTPIQNnL~ELws 1169 (2239)
..+++++||||..+.-...+.
T Consensus 160 ~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 160 NVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred cceEEEEecCCchhHHHHHHH
Confidence 678899999997444333333
No 147
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.54 E-value=1.1e-14 Score=142.54 Aligned_cols=84 Identities=19% Similarity=0.358 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000101 1942 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2021 (2239)
Q Consensus 1942 ck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~ 2021 (2239)
|.+|++.|... .++..|...|....+|+||.+ |.+||||.+|.+||+.+.|.++++|..||.+||.||+.||+
T Consensus 1 C~~il~~l~~~------~~~~~F~~~~~~~~~p~y~~~-i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~ 73 (84)
T PF00439_consen 1 CREILEELMKH------PISSPFSKPVDPKEYPDYYEI-IKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNP 73 (84)
T ss_dssp HHHHHHHHHTS------TTGGGGSSSTHTTTSTTHHHH-SSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHcC------CCchhhcCCCChhhCCCHHHH-HhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCC
Confidence 88999988554 389999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHH
Q 000101 2022 FSHEVRSEARK 2032 (2239)
Q Consensus 2022 ~~sev~~dA~~ 2032 (2239)
++|.+|.+|++
T Consensus 74 ~~s~~~~~A~~ 84 (84)
T PF00439_consen 74 PDSPIYKAAEK 84 (84)
T ss_dssp TTSHHHHHHHH
T ss_pred CcCHHHHHhcC
Confidence 99999999974
No 148
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.52 E-value=7.1e-13 Score=172.75 Aligned_cols=114 Identities=22% Similarity=0.199 Sum_probs=103.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
..+++..|...|..+...+.+|||||.....++.|.++|...|+.+..+||.++..+|.+++..|..+.. .+|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i---~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEF---DVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCc---eEEEEcC
Confidence 3567888888888888889999999999999999999999999999999999999999999999986433 3789999
Q ss_pred ccccccCCCcCceEEEcC-----CCCCcchHHHhhhhhcccC
Q 000101 1405 AAGRGLNLQSADTVIIYD-----PDPNPKNEEQAVARAHRIG 1441 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifD-----ppWNP~~dlQAiGRAhRIG 1441 (2239)
.+++|++++.+++||++| .+-+...++|++||++|..
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~ 542 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 542 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC
Confidence 999999999999999999 5668889999999999974
No 149
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.51 E-value=4.8e-14 Score=145.87 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=84.0
Q ss_pred HHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCc
Q 000101 1945 VISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSH 2024 (2239)
Q Consensus 1945 vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~s 2024 (2239)
++..+..-..++.--.+++|.+-|++.+.|+||.+ |++||||.+|++||+.++|.+++||.+||+|||+||+.||+++|
T Consensus 8 ~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s 86 (109)
T cd05492 8 IVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRL-IHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADS 86 (109)
T ss_pred HHHHHHhcCcccccccccccccCchhccCCCHHHH-hCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 33444444456666689999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000101 2025 EVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2025 ev~~dA~~L~~~f~~~~ 2041 (2239)
.+|..|+.|...-..-|
T Consensus 87 ~~~~~A~~l~~d~~~el 103 (109)
T cd05492 87 EQYDAARWLYRDTCHDL 103 (109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999876655443
No 150
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.50 E-value=1.6e-12 Score=176.18 Aligned_cols=105 Identities=16% Similarity=0.110 Sum_probs=85.1
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCe---EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLV---YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGik---y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
....+|||+.....++.+.+.|...++. ++.|||+++.++|.++++.+ + .+-|||+|+++++||+++++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g-~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----S-GRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----C-CeeEEEeccHHhhccccCcceEE
Confidence 3568999999999999999999988765 67899999999999987653 2 24479999999999999999999
Q ss_pred EEcC---------------CCCCc---chHHHhhhhhcccCCcceEEEEEEehh
Q 000101 1419 IIYD---------------PDPNP---KNEEQAVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1419 IifD---------------ppWNP---~~dlQAiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
|.++ .+..| ..+.||.||++|.+ +-.+|+|++-
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte 410 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSE 410 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCH
Confidence 9985 23333 67999999999984 3445666653
No 151
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.50 E-value=6e-12 Score=148.12 Aligned_cols=311 Identities=17% Similarity=0.197 Sum_probs=205.9
Q ss_pred cccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 995 MLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 995 ~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
+-..|+|-++|..+-+-++..+.+....|+..-+|.|||-+....|.+.+. ..+.+.|..|.- ++..-...|..-+
T Consensus 92 L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 92 LQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN---QGGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred eeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh---cCCeEEEecCcccchHHHHHHHHHhh
Confidence 335789999999999999999999999999999999999888888877664 446788888854 7777777788888
Q ss_pred CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEeccccccc-ChhhHHHHHhhcc--ccc
Q 000101 1074 PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK-DRESVLARDLDRY--RCQ 1150 (2239)
Q Consensus 1074 Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIK-N~~SKlskaLk~L--ka~ 1150 (2239)
++..+.+.+|..+.. + ...+||+|-..+.+.. ..||+|||||.+.+- ..+-.+..+++.- ...
T Consensus 169 ~~~~I~~Lyg~S~~~------f---r~plvVaTtHQLlrFk-----~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g 234 (441)
T COG4098 169 SNCDIDLLYGDSDSY------F---RAPLVVATTHQLLRFK-----QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEG 234 (441)
T ss_pred ccCCeeeEecCCchh------c---cccEEEEehHHHHHHH-----hhccEEEEeccccccccCCHHHHHHHHHhhcccC
Confidence 888877777765431 1 2345555555554443 368999999999872 2223344444432 234
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh-HHhh
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP-FMLR 1229 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP-FmLR 1229 (2239)
.+|.|||||-. .+.+.+. +.-+++ .+-+
T Consensus 235 ~~IylTATp~k----------------------~l~r~~~-----------------------------~g~~~~~klp~ 263 (441)
T COG4098 235 ATIYLTATPTK----------------------KLERKIL-----------------------------KGNLRILKLPA 263 (441)
T ss_pred ceEEEecCChH----------------------HHHHHhh-----------------------------hCCeeEeecch
Confidence 58999999821 1111000 000000 0111
Q ss_pred HhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
|.- .+.||-. ..+++. .+-+. ++
T Consensus 264 RfH---~~pLpvP--kf~w~~--~~~k~---------------------------------------l~----------- 286 (441)
T COG4098 264 RFH---GKPLPVP--KFVWIG--NWNKK---------------------------------------LQ----------- 286 (441)
T ss_pred hhc---CCCCCCC--ceEEec--cHHHH---------------------------------------hh-----------
Confidence 110 1123322 112211 00000 00
Q ss_pred CCCCccccchhhHhhcccHHH-HHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CC-eEEeecCCCCHHHHHHHH
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLW-ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QL-VYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLe-lLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Gi-ky~RLDGsts~eeRqeiL 1386 (2239)
-.|+. .|.++|.+...+|..+|||.....+++-+...|+.. +. ....+|... ..|.+.+
T Consensus 287 ----------------r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV 348 (441)
T COG4098 287 ----------------RNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKV 348 (441)
T ss_pred ----------------hccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHH
Confidence 01232 467788888889999999999999999999999433 22 234455543 5799999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCC--CCcchHHHhhhhhcccCCc--ceEEEEEE
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD--PNPKNEEQAVARAHRIGQK--REVKVIYM 1451 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp--WNP~~dlQAiGRAhRIGQk--KeV~VyrL 1451 (2239)
+.|+++..+ +|++|....+|+.++.+|++|+=.-. ++-...+|--||++|--.. .+|..|.+
T Consensus 349 ~~fR~G~~~---lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 349 EAFRDGKIT---LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHHcCceE---EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 999975444 89999999999999999999886555 8889999999999996443 44555554
No 152
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.5e-11 Score=161.09 Aligned_cols=418 Identities=16% Similarity=0.214 Sum_probs=233.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-H---HHHHHHHHHCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-V---NWKSELHKWLPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL-s---QW~~Ef~KwaPs 1075 (2239)
..++-|+.|---|. .|-|.-..||.|||++++..+. +....+ ..++||+|+.-| . .|...|.+|+ +
T Consensus 82 ~~ydVQliGgl~L~------~G~IaEm~TGEGKTL~a~lp~~-l~al~g--~~VhIvT~ndyLA~RD~e~m~~l~~~l-G 151 (908)
T PRK13107 82 RHFDVQLLGGMVLD------SNRIAEMRTGEGKTLTATLPAY-LNALTG--KGVHVITVNDYLARRDAENNRPLFEFL-G 151 (908)
T ss_pred CcCchHHhcchHhc------CCccccccCCCCchHHHHHHHH-HHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 34445887764442 3557778999999998765553 322222 358999998844 3 3888888886 5
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh----h-----hhcccCCceEEEecccccccChhhHHHHHhhc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD----R-----SKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1146 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD----~-----s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~ 1146 (2239)
+.+.+..+..... ........+|+++|...|-.| . ..+....+.++||||++.+.-..
T Consensus 152 lsv~~i~~~~~~~----~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDE--------- 218 (908)
T PRK13107 152 LTVGINVAGLGQQ----EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDE--------- 218 (908)
T ss_pred CeEEEecCCCCHH----HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcccc---------
Confidence 6665555543321 113334779999998887322 1 11122578899999999885322
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhhcCcccCC----hHHHHh--hhcCCcccCCCCCCCChhh--------------
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN----RKAFHD--WFSQPFQKEGPTHNADDDW-------------- 1206 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s----~k~F~e--~F~kPf~~~g~~~~~e~d~-------------- 1206 (2239)
+..-|++||.+ ... .++|..++.+...+... .+.|.. .|...- ......-++...
T Consensus 219 --ArtPLIISg~~-~~~-~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~ide-k~~~v~LTe~G~~~~e~~l~~~~~~~ 293 (908)
T PRK13107 219 --ARTPLIISGAA-EDS-SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDE-KAKQVHFTERGQEKVENLLIERGMLA 293 (908)
T ss_pred --CCCceeecCCC-ccc-hHHHHHHHHHHHHHHhhhhccccccCCCCCEEEec-CCCeeeechHHHHHHHHHHHhCCccc
Confidence 22347778754 322 55666555332221100 000000 000000 000000000000
Q ss_pred ----HHHHHHHHHHHHHHHhhhhHHh-hHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchh
Q 000101 1207 ----LETEKKVIIIHRLHQILEPFML-RRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPED 1274 (2239)
Q Consensus 1207 ----l~~ee~~lii~RLhklLrPFmL-RRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ 1274 (2239)
+........++.+...|+.+.+ .+-+.-|.. +....+|. +.| .+..-+.+.|.....+.+....
T Consensus 294 ~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~---dg~V~IVD-e~TGRim~grrwsdGLHQaIEaKE~v~I~~e~ 369 (908)
T PRK13107 294 EGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQ---DNEVIIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVHIQNEN 369 (908)
T ss_pred CcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCCCCCCCccchHHHHHHHHhcCCCCCCCc
Confidence 0000011123333344443322 222222211 11111111 111 2333444444443322222111
Q ss_pred HHhhhhcChhhH--HHHHHHH-------HHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHH
Q 000101 1275 EKRRVQKNPIYQ--AKVYKTL-------NNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQ 1340 (2239)
Q Consensus 1275 ek~~l~k~~~~~--~k~~ksL-------~niImqLRKiCnHP~L~~p~~~~~-----s~d~Li~~SGKLelLdrIL~kLk 1340 (2239)
. .+..- .++ -+.|..| ...-..|.++-+.+.+..|..... ..........|+..+.+-+.++.
T Consensus 370 ~--t~AsI-T~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~ 446 (908)
T PRK13107 370 Q--TLASI-TFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCR 446 (908)
T ss_pred e--eeeee-hHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHH
Confidence 0 00000 000 0001111 111234666655555544432211 11112233568888888888889
Q ss_pred hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCc------
Q 000101 1341 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS------ 1414 (2239)
Q Consensus 1341 atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqa------ 1414 (2239)
+.|..|||||......+.|..+|...|+++..|++.....+|..+...|+.+ . ++|+|+.+|+|+|+.=
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G--~---VtIATnmAGRGTDIkLggn~~~ 521 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTG--A---VTIATNMAGRGTDIVLGGNWNM 521 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCC--c---EEEecCCcCCCcceecCCchHH
Confidence 9999999999999999999999999999999999999999999999999863 3 8999999999999772
Q ss_pred -------------------------------CceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1415 -------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1415 -------------------------------ADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
-=+||.-..+-|-..+.|..||++|-|......+| ++.|+.+.
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~--lSlED~L~ 595 (908)
T PRK13107 522 EIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY--LSMEDSLM 595 (908)
T ss_pred hhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE--EEeCcHHH
Confidence 23789999999999999999999999988765444 23455544
No 153
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.49 E-value=6.9e-13 Score=176.09 Aligned_cols=310 Identities=18% Similarity=0.170 Sum_probs=218.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
..||-|.++|.-.+. +..+++-..||-||.+....... -..|-+|||.|+- |+.-...-+.+ .++..
T Consensus 264 ~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA~------l~~gitvVISPL~SLm~DQv~~L~~--~~I~a 331 (941)
T KOG0351|consen 264 GFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPAL------LLGGVTVVISPLISLMQDQVTHLSK--KGIPA 331 (941)
T ss_pred cCChhHHHHHHHHHc----CCceEEEeecCCceeeEeecccc------ccCCceEEeccHHHHHHHHHHhhhh--cCcce
Confidence 699999999985555 77788889999999977643322 1234789999965 66555544532 24444
Q ss_pred EEEecc--hhhHHHHHHHHhhc--CccEEEEehhHHHHhhhhc---c-cC---CceEEEecccccccCh-------hhHH
Q 000101 1079 IYYVGA--KDQRSRLFSQVAAL--KFNVLVTTYEFIMYDRSKL---S-KV---DWKYIIIDEAQRMKDR-------ESVL 1140 (2239)
Q Consensus 1079 vvy~Gs--kd~Rk~l~~~i~~~--kfdVVITTYE~L~kD~s~L---~-ki---kWd~VIIDEAHrIKN~-------~SKl 1140 (2239)
....+. ..++...+..+..+ .++|+..|+|.+......+ . .. -..++||||||....+ ..++
T Consensus 332 ~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l 411 (941)
T KOG0351|consen 332 CFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRL 411 (941)
T ss_pred eeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHH
Confidence 455444 34455666667766 7899999999997653221 1 11 2689999999987542 2233
Q ss_pred HHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000101 1141 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1220 (2239)
Q Consensus 1141 skaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLh 1220 (2239)
.....++...-.|+||||--..--.|+...|++-+|.+|.+ -|+.+
T Consensus 412 ~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~------sfnR~---------------------------- 457 (941)
T KOG0351|consen 412 GLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS------SFNRP---------------------------- 457 (941)
T ss_pred HHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc------cCCCC----------------------------
Confidence 33334555556899999987788888888888877775432 12111
Q ss_pred HhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000101 1221 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1300 (2239)
Q Consensus 1221 klLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqL 1300 (2239)
...+-|.-..+ .. .+...+...
T Consensus 458 ---------------------NL~yeV~~k~~--~~-----------------------------------~~~~~~~~~ 479 (941)
T KOG0351|consen 458 ---------------------NLKYEVSPKTD--KD-----------------------------------ALLDILEES 479 (941)
T ss_pred ---------------------CceEEEEeccC--cc-----------------------------------chHHHHHHh
Confidence 00011110000 00 000001111
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHH
Q 000101 1301 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1380 (2239)
Q Consensus 1301 RKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~e 1380 (2239)
+ ....+.-.||||.....++.+...|...|+....+|.+++..
T Consensus 480 ~-------------------------------------~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~ 522 (941)
T KOG0351|consen 480 K-------------------------------------LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPK 522 (941)
T ss_pred h-------------------------------------hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHH
Confidence 1 112355789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1381 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1381 eRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+|..+-..|..+. + .+++.|=|.|-|||-+++..||+|..|-+-.-|.|-.|||+|-|+...+.+|+-..
T Consensus 523 ~R~~Vq~~w~~~~--~-~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 523 ERETVQKAWMSDK--I-RVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred HHHHHHHHHhcCC--C-eEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 9999999999754 3 36889999999999999999999999999999999999999999998887776543
No 154
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.49 E-value=3.3e-13 Score=137.47 Aligned_cols=136 Identities=23% Similarity=0.293 Sum_probs=100.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCC-CCceEEEecchhhHHHHHHHHhhc
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLP-SVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaP-slkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
++++..++|+|||.+++.++..+... ...+++||+||... +.+|...+..|.. .+.+.++.+........ .....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 78 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE--KLLSG 78 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH--HHhcC
Confidence 57999999999999999999888764 45679999999885 5556677777775 46666666655443332 23345
Q ss_pred CccEEEEehhHHHHhhhh--cccCCceEEEecccccccChhhHHH---HHhhccccceEEEecCCC
Q 000101 1099 KFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRESVLA---RDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN~~SKls---kaLk~Lka~rRLLLTGTP 1159 (2239)
..+|+|+||+.+...... +....|++|||||+|.+.+...... .........++++|||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999988766433 2345799999999999987655443 333445777899999998
No 155
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.46 E-value=3.4e-12 Score=167.03 Aligned_cols=112 Identities=22% Similarity=0.246 Sum_probs=101.7
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1405 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrA 1405 (2239)
.+++..|...|..+...+.+|||||.....++.|..+|...|+++..+||.++..+|..++..|..+. + .+|++|.+
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~--i-~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--F-DVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC--c-eEEEEeCH
Confidence 46777888888888888999999999999999999999999999999999999999999999998643 2 36899999
Q ss_pred cccccCCCcCceEEEcCC-----CCCcchHHHhhhhhccc
Q 000101 1406 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1406 GGeGLNLqaADtVIifDp-----pWNP~~dlQAiGRAhRI 1440 (2239)
+++|++++.+++||++|. +-++..|+|++||++|-
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~ 545 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC
Confidence 999999999999999997 46889999999999994
No 156
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.46 E-value=1.1e-13 Score=132.97 Aligned_cols=78 Identities=32% Similarity=0.535 Sum_probs=73.5
Q ss_pred HHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhccc
Q 000101 1361 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1361 d~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRI 1440 (2239)
.+|...++.+..+||+++.++|..+++.|+.++. .+|++|.++++|||++.+++||+||++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688999999999999999999999999997555 4899999999999999999999999999999999999999998
Q ss_pred C
Q 000101 1441 G 1441 (2239)
Q Consensus 1441 G 1441 (2239)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 157
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.45 E-value=3.2e-12 Score=173.80 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=85.1
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcC---CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rG---iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
....||||+.....++.+.+.|...+ +.++.|||+++.++|.++++.+. .+-|||||+++.+||+++++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~-----~rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS-----GRRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC-----CceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 45888999999999998855432 23479999999999999999999
Q ss_pred EEcCCC----C--------------CcchHHHhhhhhcccCCcceEEEEEEehh
Q 000101 1419 IIYDPD----P--------------NPKNEEQAVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1419 IifDpp----W--------------NP~~dlQAiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
|.++.. + +-..+.||.||++|.| +-.+|+|++-
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte 403 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSE 403 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCH
Confidence 998732 1 3458999999999998 4456677663
No 158
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=7.2e-11 Score=154.97 Aligned_cols=155 Identities=16% Similarity=0.238 Sum_probs=113.0
Q ss_pred HHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEe
Q 000101 1298 MELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1372 (2239)
Q Consensus 1298 mqLRKiCnHP~L~~p~~~~~-----s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~R 1372 (2239)
..|.++-+.+.+..|..... ..........|+..+..-+..+...|..|||-|.++...+.|..+|...|+++..
T Consensus 518 ~Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~v 597 (970)
T PRK12899 518 REFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTV 597 (970)
T ss_pred HHHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCccee
Confidence 45666666655554443221 1111223346888888888888899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcC--------ceEEEcCCCCCcchHHHhhhhhcccCCcc
Q 000101 1373 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQKR 1444 (2239)
Q Consensus 1373 LDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA--------DtVIifDppWNP~~dlQAiGRAhRIGQkK 1444 (2239)
|+-.-. +.-..+|.+- +..-.|.|+|..+|+|.|+.-. =+||.-..+-|...+.|..||++|-|...
T Consensus 598 LNak~~-~~Ea~iia~A----G~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpG 672 (970)
T PRK12899 598 LNAKNH-AQEAEIIAGA----GKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPG 672 (970)
T ss_pred cccchh-hhHHHHHHhc----CCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCC
Confidence 988633 2333455432 2333589999999999997643 37899999999999999999999999887
Q ss_pred eEEEEEEehhhhhhh
Q 000101 1445 EVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1445 eV~VyrLvaVEEkI~ 1459 (2239)
....| ++.|+.+.
T Consensus 673 ss~f~--lSlEDdL~ 685 (970)
T PRK12899 673 AAKFF--LSFEDRLM 685 (970)
T ss_pred ceeEE--EEcchHHH
Confidence 76554 23455544
No 159
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=1.3e-10 Score=152.88 Aligned_cols=127 Identities=19% Similarity=0.265 Sum_probs=108.4
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1405 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrA 1405 (2239)
..|+..|...+..+...+..|||||.++...+.|..+|...|+++..||+ ...+|+..|..|....+ .|+|+|+.
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g---~VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG---AVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC---eEEEeccC
Confidence 35889999999888889999999999999999999999999999999997 67899999999986444 48999999
Q ss_pred cccccCCCcCc--------eEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1406 AGRGLNLQSAD--------TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1406 GGeGLNLqaAD--------tVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
+|+|+|+.-.+ +||.++.+-+...|.|++||++|.|....... |++.++.+.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f--fvSleD~Lm 715 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF--YVSLEDELM 715 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE--EechhHHHH
Confidence 99999999433 44889999999999999999999998866533 344555554
No 160
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.43 E-value=1.1e-11 Score=148.28 Aligned_cols=321 Identities=17% Similarity=0.169 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEE
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYY 1081 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy 1081 (2239)
+-|..++.-++. .+....++..||.||++..-... |+. .|-++||.|.- |+.....-+.+.--....+--
T Consensus 23 ~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPa--L~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPA--LVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchH--HHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcc
Confidence 578889888875 34557899999999997764332 221 23578888965 666566666554322222222
Q ss_pred ecchhhHHHHHHHHhhcCc--cEEEEehhHHHHh-----hhhc-ccCCceEEEecccccccCh------hhHHHHHhhc-
Q 000101 1082 VGAKDQRSRLFSQVAALKF--NVLVTTYEFIMYD-----RSKL-SKVDWKYIIIDEAQRMKDR------ESVLARDLDR- 1146 (2239)
Q Consensus 1082 ~Gskd~Rk~l~~~i~~~kf--dVVITTYE~L~kD-----~s~L-~kikWd~VIIDEAHrIKN~------~SKlskaLk~- 1146 (2239)
.-+..+|.++...+...+. .++..|++....+ ...| ......|+||||||.+... .....-.|+.
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 3355678888777665554 4677888876543 2223 3346789999999988432 2222222322
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhhcCcc-cCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV-FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~i-F~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
+..--.++||||--..--+|++..|.+-.|-. |.+ ..|...+
T Consensus 174 ~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT-P~FR~NL------------------------------------ 216 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT-PTFRDNL------------------------------------ 216 (641)
T ss_pred CCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC-cchhhhh------------------------------------
Confidence 23334688999977777778888887766632 221 1222110
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
+|+..... .+..-+..|.-.|.
T Consensus 217 --------------------------------FYD~~~K~--------------------------~I~D~~~~LaDF~~ 238 (641)
T KOG0352|consen 217 --------------------------------FYDNHMKS--------------------------FITDCLTVLADFSS 238 (641)
T ss_pred --------------------------------hHHHHHHH--------------------------HhhhHhHhHHHHHH
Confidence 11100000 00000001111111
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1385 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqei 1385 (2239)
|.+-....+.+.. | .-..=-||||..++.++.|+-.|..+||....+|.+.+..+|..+
T Consensus 239 ~~LG~~~~~~~~~---------K------------~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeV 297 (641)
T KOG0352|consen 239 SNLGKHEKASQNK---------K------------TFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEV 297 (641)
T ss_pred HhcCChhhhhcCC---------C------------CcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHH
Confidence 1111000000000 0 001125999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1386 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1386 L~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
-+.|-.++.+ +|+.|-..|.|+|-+++..||+.|++-|..-|.|--||++|-|-..-++.||-
T Consensus 298 Qe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 298 QEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred HHHHhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeec
Confidence 9999876665 78899999999999999999999999999999999999999998888999875
No 161
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.42 E-value=5.8e-12 Score=154.66 Aligned_cols=309 Identities=19% Similarity=0.182 Sum_probs=199.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHH-HHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM-ALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAI-ALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs-- 1075 (2239)
+|.|-|.-+|..-+ -++.|-++...|++|||+++= |-|..++ ...+.+|++||.- |..|=..+|.+-+..
T Consensus 216 eLlPVQ~laVe~GL---LeG~nllVVSaTasGKTLIgElAGi~~~l---~~g~KmlfLvPLVALANQKy~dF~~rYs~Lg 289 (830)
T COG1202 216 ELLPVQVLAVEAGL---LEGENLLVVSATASGKTLIGELAGIPRLL---SGGKKMLFLVPLVALANQKYEDFKERYSKLG 289 (830)
T ss_pred eecchhhhhhhhcc---ccCCceEEEeccCCCcchHHHhhCcHHHH---hCCCeEEEEehhHHhhcchHHHHHHHhhccc
Confidence 79999999886433 246777899999999998752 2233333 3457899999987 555566678776643
Q ss_pred CceEEEecchhhHHHH--HHHHhhcCccEEEEehhHHHHhhhh-cccCCceEEEecccccccC--hhhHHHHH---hhcc
Q 000101 1076 VSCIYYVGAKDQRSRL--FSQVAALKFNVLVTTYEFIMYDRSK-LSKVDWKYIIIDEAQRMKD--RESVLARD---LDRY 1147 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l--~~~i~~~kfdVVITTYE~L~kD~s~-L~kikWd~VIIDEAHrIKN--~~SKlska---Lk~L 1147 (2239)
+++.+-+|....+..- ..-....+.+|+|.||+-+-..... -.--+...|||||.|.+.. ....+--. |+.+
T Consensus 290 lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l 369 (830)
T COG1202 290 LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYL 369 (830)
T ss_pred ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHHh
Confidence 4555566765443321 1112235679999999876432111 1123678999999999965 23333222 3333
Q ss_pred -ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1148 -RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1148 -ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
.....+.||||- .|+.||..-|+.-+. .
T Consensus 370 ~~~AQ~i~LSATV--gNp~elA~~l~a~lV-----------------~-------------------------------- 398 (830)
T COG1202 370 FPGAQFIYLSATV--GNPEELAKKLGAKLV-----------------L-------------------------------- 398 (830)
T ss_pred CCCCeEEEEEeec--CChHHHHHHhCCeeE-----------------e--------------------------------
Confidence 446789999993 444555433221000 0
Q ss_pred HhhHhHhhhhcCCC-CceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1227 MLRRRVEDVEGSLP-PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1227 mLRRlKkDVekdLP-~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
-..-| |...++++|.-...
T Consensus 399 ---------y~~RPVplErHlvf~~~e~e--------------------------------------------------- 418 (830)
T COG1202 399 ---------YDERPVPLERHLVFARNESE--------------------------------------------------- 418 (830)
T ss_pred ---------ecCCCCChhHeeeeecCchH---------------------------------------------------
Confidence 00011 12223444421111
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHH----HhcC--CeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL----QRTG--HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL 1379 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kL----katG--hKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~ 1379 (2239)
|..++.+++..- ...| ..+|||+..+.-+..|+++|..+|++...+|++++.
T Consensus 419 ----------------------K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y 476 (830)
T COG1202 419 ----------------------KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPY 476 (830)
T ss_pred ----------------------HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcH
Confidence 111111111110 1123 358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE----c-CCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1380 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----Y-DPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1380 eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi----f-DppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
.+|..+-..|.+.+-. .+++|.|.+-|+|+++ +.||| + .-|.+|..|.|-.|||+|.+=...-.||.+
T Consensus 477 ~eRk~vE~~F~~q~l~---~VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyll 549 (830)
T COG1202 477 KERKSVERAFAAQELA---AVVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLL 549 (830)
T ss_pred HHHHHHHHHHhcCCcc---eEeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEE
Confidence 9999999999975555 6899999999999995 34443 3 345599999999999999986644455555
No 162
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.41 E-value=2.1e-11 Score=157.81 Aligned_cols=299 Identities=19% Similarity=0.176 Sum_probs=178.1
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH-HHHHHHHHHHHHCC--CCceEEEec
Q 000101 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA-VLVNWKSELHKWLP--SVSCIYYVG 1083 (2239)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-------~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--slkvvvy~G 1083 (2239)
..|..+.|.|+|..||+|||..|...|+.++..+ .+.-.++.|+|.. |+......|.+-+. ++.|.-+.|
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTG 200 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTG 200 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecC
Confidence 3567889999999999999999988888877531 2334789999965 55444444444444 677888888
Q ss_pred chhhHHHHHHHHhhcCccEEEEehhHHHH-------hhhhcccCCceEEEecccccccChh-----hHHHHHhhcc----
Q 000101 1084 AKDQRSRLFSQVAALKFNVLVTTYEFIMY-------DRSKLSKVDWKYIIIDEAQRMKDRE-----SVLARDLDRY---- 1147 (2239)
Q Consensus 1084 skd~Rk~l~~~i~~~kfdVVITTYE~L~k-------D~s~L~kikWd~VIIDEAHrIKN~~-----SKlskaLk~L---- 1147 (2239)
....-+. .....+|+|||+|.+-- +...+ -...+|||||.|.+.... +-+++++...
T Consensus 201 D~ql~~t-----ei~~tqiiVTTPEKwDvvTRk~~~d~~l~--~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessq 273 (1230)
T KOG0952|consen 201 DTQLTKT-----EIADTQIIVTTPEKWDVVTRKSVGDSALF--SLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQ 273 (1230)
T ss_pred cchhhHH-----HHHhcCEEEecccceeeeeeeeccchhhh--hheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhh
Confidence 7543221 13467999999987621 11111 146799999999997643 3445555332
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
..-+.++||||- -|..| +-.||....+...-.|+..| +|.-
T Consensus 274 s~IRivgLSATl--PN~eD---vA~fL~vn~~~glfsFd~~y----------------------------------RPvp 314 (1230)
T KOG0952|consen 274 SMIRIVGLSATL--PNYED---VARFLRVNPYAGLFSFDQRY----------------------------------RPVP 314 (1230)
T ss_pred hheEEEEeeccC--CCHHH---HHHHhcCCCccceeeecccc----------------------------------cccc
Confidence 234678899992 13333 33444433322222333322 1111
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccC--HHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMS--AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS--~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
|+ ..++-++.. ..+....+ .
T Consensus 315 L~--------------~~~iG~k~~~~~~~~~~~d-----------------------------------------~--- 336 (1230)
T KOG0952|consen 315 LT--------------QGFIGIKGKKNRQQKKNID-----------------------------------------E--- 336 (1230)
T ss_pred ee--------------eeEEeeecccchhhhhhHH-----------------------------------------H---
Confidence 10 001111000 00000000 0
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc----CCe------------
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR----QLV------------ 1369 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r----Gik------------ 1369 (2239)
.+.++ +.++...||.|+||+..+...--.+..|..+ |..
T Consensus 337 ------------------------~~~~k-v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l 391 (1230)
T KOG0952|consen 337 ------------------------VCYDK-VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQL 391 (1230)
T ss_pred ------------------------HHHHH-HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHH
Confidence 01122 2233457899999987766554444444332 222
Q ss_pred -------EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcch----------HHH
Q 000101 1370 -------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN----------EEQ 1432 (2239)
Q Consensus 1370 -------y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~----------dlQ 1432 (2239)
+..-|-++.-.+|.-+-+.|..+... +|+||...+.|+||++--.+|-=..-|++.. .+|
T Consensus 392 ~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQ 468 (1230)
T KOG0952|consen 392 KELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQ 468 (1230)
T ss_pred HHHHHhhhhhcccccchhhHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHH
Confidence 12235577888998888899864433 7999999999999997655554455576665 789
Q ss_pred hhhhhcccCCcc
Q 000101 1433 AVARAHRIGQKR 1444 (2239)
Q Consensus 1433 AiGRAhRIGQkK 1444 (2239)
-.|||+|..=.+
T Consensus 469 ifGRAGRPqFd~ 480 (1230)
T KOG0952|consen 469 IFGRAGRPQFDS 480 (1230)
T ss_pred HHhccCCCCCCC
Confidence 999999986443
No 163
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.37 E-value=9.5e-12 Score=134.32 Aligned_cols=156 Identities=22% Similarity=0.266 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--CceE
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--VSCI 1079 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs--lkvv 1079 (2239)
|+|.+++.-+.. +.+.|+...+|+|||..++..+...+... ....+||++|.. ++.+-..++.+++.. +.+.
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 799999987774 67789999999999999987777666433 445899999966 888888999999864 6777
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccCh--hhHHHHHhhcc---ccceE
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY---RCQRR 1152 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN~--~SKlskaLk~L---ka~rR 1152 (2239)
.++|...........+ ....+|+|+|++.+...... +.-.+.++|||||+|.+... .......+..+ ...+.
T Consensus 77 ~~~~~~~~~~~~~~~~-~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 77 LLHGGQSISEDQREVL-SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EESTTSCHHHHHHHHH-HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred cccccccccccccccc-cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 7777654322222222 45789999999999876543 22235899999999999652 23333333433 34568
Q ss_pred EEecCCCCCCCHH
Q 000101 1153 LLLTGTPLQNDLK 1165 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ 1165 (2239)
+++||||- .++.
T Consensus 156 i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 156 ILLSATLP-SNVE 167 (169)
T ss_dssp EEEESSST-HHHH
T ss_pred EEEeeCCC-hhHh
Confidence 99999996 4444
No 164
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.32 E-value=3.2e-12 Score=121.30 Aligned_cols=81 Identities=36% Similarity=0.461 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhh
Q 000101 1358 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1437 (2239)
Q Consensus 1358 ILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRA 1437 (2239)
.|.++|...++.+..+||.++.++|..+++.|+.++. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999997543 5899999999999999999999999999999999999999
Q ss_pred cccC
Q 000101 1438 HRIG 1441 (2239)
Q Consensus 1438 hRIG 1441 (2239)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 165
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.31 E-value=3e-11 Score=135.26 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=110.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh--CCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK--GNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k--~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
.+++||.+++..+.. +.+.|++.++|+|||+.++..+...+... .....+|||||.. ++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999988876 67889999999999999766655554433 3445789999976 88889999988875
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhhccc-c
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-C 1149 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~Lk-a 1149 (2239)
++.+..+.|......... ......+|+|+|++.+..... .+.-..++++||||+|.+.+.. ..+...+..+. .
T Consensus 97 ~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~ 174 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIR--KLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKD 174 (203)
T ss_pred CceEEEEECCCCHHHHHH--HhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcc
Confidence 566677777665433321 122478999999988765421 2223467899999999986433 22333344444 3
Q ss_pred ceEEEecCCCC
Q 000101 1150 QRRLLLTGTPL 1160 (2239)
Q Consensus 1150 ~rRLLLTGTPI 1160 (2239)
...+++||||-
T Consensus 175 ~~~~~~SAT~~ 185 (203)
T cd00268 175 RQTLLFSATMP 185 (203)
T ss_pred cEEEEEeccCC
Confidence 55788999985
No 166
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.31 E-value=4e-10 Score=149.66 Aligned_cols=322 Identities=17% Similarity=0.139 Sum_probs=189.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~-k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
..+++|..++++.......+..++|..+||.|||..++.+..++... .....+++.|.|.. ++....+.+..++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 56899999999999888777578999999999999999988888765 33456777888977 45667778888776554
Q ss_pred eEEE--ecchhhHHHHHHHHhhcCccEEEEehhHH---------------HHhh------hhcccCCceEEEeccccccc
Q 000101 1078 CIYY--VGAKDQRSRLFSQVAALKFNVLVTTYEFI---------------MYDR------SKLSKVDWKYIIIDEAQRMK 1134 (2239)
Q Consensus 1078 vvvy--~Gskd~Rk~l~~~i~~~kfdVVITTYE~L---------------~kD~------s~L~kikWd~VIIDEAHrIK 1134 (2239)
+... +|.....-...... ..-+.++|+++. .... ..+..+-..++|+||+|-+-
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~---~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQ---DILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred cccccccccccchhhhcccc---ccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 4443 45433221111100 111333333322 2110 01223445689999999996
Q ss_pred Ch-hh-HHHHHhhccc--cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHH
Q 000101 1135 DR-ES-VLARDLDRYR--CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1210 (2239)
Q Consensus 1135 N~-~S-KlskaLk~Lk--a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~e 1210 (2239)
.. .. .+..++..+. ....|++|||+ | ..|.+.+.
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATl----------------P------~~~~~~l~-------------------- 389 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATL----------------P------PFLKEKLK-------------------- 389 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCC----------------C------HHHHHHHH--------------------
Confidence 54 22 2233333332 45688999995 1 11111111
Q ss_pred HHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHH
Q 000101 1211 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY 1290 (2239)
Q Consensus 1211 e~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ 1290 (2239)
..+.. . ...+ ...+ .|+
T Consensus 390 ----------~~~~~----~-~~~~---~~~~-----~~~---------------------------------------- 406 (733)
T COG1203 390 ----------KALGK----G-REVV---ENAK-----FCP---------------------------------------- 406 (733)
T ss_pred ----------HHHhc----c-ccee---cccc-----ccc----------------------------------------
Confidence 00000 0 0000 0000 000
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeE
Q 000101 1291 KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVY 1370 (2239)
Q Consensus 1291 ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky 1370 (2239)
.++.+.+......... .... ..+..++..-...+.+|+|-|+.+..+..+...|+..+.++
T Consensus 407 ------------~~~e~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v 467 (733)
T COG1203 407 ------------KEDEPGLKRKERVDVE------DGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKV 467 (733)
T ss_pred ------------cccccccccccchhhh------hhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCE
Confidence 0000000000000000 0000 11222233334568999999999999999999999988889
Q ss_pred EeecCCCCHHHHHHHHHHHhcC-CCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccC--CcceEE
Q 000101 1371 RRIDGTTSLEDRESAIVDFNSH-DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG--QKREVK 1447 (2239)
Q Consensus 1371 ~RLDGsts~eeRqeiL~~FNs~-ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIG--QkKeV~ 1447 (2239)
+.||+.++..+|.+.++.+..- ..+-..|+|+|.+...|||+. .|.+|- -.--....+||.||++|-| ....+.
T Consensus 468 ~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~ 544 (733)
T COG1203 468 LLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIY 544 (733)
T ss_pred EEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCcee
Confidence 9999999999999988865531 112234799999999999987 666663 2223456899999999999 445566
Q ss_pred EEEE
Q 000101 1448 VIYM 1451 (2239)
Q Consensus 1448 VyrL 1451 (2239)
|+..
T Consensus 545 v~~~ 548 (733)
T COG1203 545 VYND 548 (733)
T ss_pred Eeec
Confidence 6544
No 167
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.31 E-value=4e-10 Score=138.85 Aligned_cols=102 Identities=26% Similarity=0.305 Sum_probs=92.9
Q ss_pred HHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCc
Q 000101 1337 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1416 (2239)
Q Consensus 1337 ~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaAD 1416 (2239)
....+.+.||||-+=...|++-|.+||...|+++..+|..+..-+|.++|.+.+.+.-+ +|+....+-+||||+.+.
T Consensus 440 ~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLREGLDiPEVs 516 (663)
T COG0556 440 RKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLREGLDLPEVS 516 (663)
T ss_pred HHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhhccCCCccee
Confidence 33456789999999999999999999999999999999999999999999999975544 799999999999999999
Q ss_pred eEEEcCCCC-----CcchHHHhhhhhcccC
Q 000101 1417 TVIIYDPDP-----NPKNEEQAVARAHRIG 1441 (2239)
Q Consensus 1417 tVIifDppW-----NP~~dlQAiGRAhRIG 1441 (2239)
.|.|+|.+- +-...+|-||||.|--
T Consensus 517 LVAIlDADKeGFLRse~SLIQtIGRAARN~ 546 (663)
T COG0556 517 LVAILDADKEGFLRSERSLIQTIGRAARNV 546 (663)
T ss_pred EEEEeecCccccccccchHHHHHHHHhhcc
Confidence 999999884 8889999999999953
No 168
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.29 E-value=8.9e-11 Score=138.15 Aligned_cols=313 Identities=18% Similarity=0.152 Sum_probs=214.6
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPslk 1077 (2239)
.+.||.|+.+++-.+. +...+|...+|-||++..-... |. ..|-.|||||. +|+......+....-+..
T Consensus 93 ekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpa--l~----adg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 93 EKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPA--LC----ADGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhH--Hh----cCCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 3799999999988776 7778999999999997654332 11 24678999996 477777777777654433
Q ss_pred eEEEecchhhHHHHHHH--HhhcCccEEEEehhHHHHhhh-------hcccCCceEEEecccccccC------hhhHHHH
Q 000101 1078 CIYYVGAKDQRSRLFSQ--VAALKFNVLVTTYEFIMYDRS-------KLSKVDWKYIIIDEAQRMKD------RESVLAR 1142 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~--i~~~kfdVVITTYE~L~kD~s-------~L~kikWd~VIIDEAHrIKN------~~SKlsk 1142 (2239)
.+--..++...++.... .....|.++..|++.+.+... .+....|.+|.|||.|.+.. +..+..-
T Consensus 163 ~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ 242 (695)
T KOG0353|consen 163 MLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALG 242 (695)
T ss_pred hccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHH
Confidence 33333444444433333 234578899999999876533 34445789999999998743 3344444
Q ss_pred Hhh-ccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000101 1143 DLD-RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221 (2239)
Q Consensus 1143 aLk-~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhk 1221 (2239)
.|+ .|+....|+||||...+-+.|.-.+|.+-. .-.|..-|+.|-.+.
T Consensus 243 ilkrqf~~~~iigltatatn~vl~d~k~il~ie~------~~tf~a~fnr~nl~y------------------------- 291 (695)
T KOG0353|consen 243 ILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA------AFTFRAGFNRPNLKY------------------------- 291 (695)
T ss_pred HHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh------hheeecccCCCCcee-------------------------
Confidence 554 577778999999987777766655544310 112233333221110
Q ss_pred hhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1222 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1222 lLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
.++.-+
T Consensus 292 -----------------------ev~qkp--------------------------------------------------- 297 (695)
T KOG0353|consen 292 -----------------------EVRQKP--------------------------------------------------- 297 (695)
T ss_pred -----------------------EeeeCC---------------------------------------------------
Confidence 000000
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHH--HhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCH
Q 000101 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL--QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL 1379 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kL--katGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~ 1379 (2239)
. .--.++.+|..-+ .-.|..-||||-...-.+-+...|...||..-.+|..+.+
T Consensus 298 ----------------~--------n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep 353 (695)
T KOG0353|consen 298 ----------------G--------NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEP 353 (695)
T ss_pred ----------------C--------ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCc
Confidence 0 0001111111111 1136778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHH---------------------------
Q 000101 1380 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ--------------------------- 1432 (2239)
Q Consensus 1380 eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQ--------------------------- 1432 (2239)
++|..+-..|-.++.. +++.|-+.|.|||-+++..||+-..+-+..+|.|
T Consensus 354 ~dks~~hq~w~a~eiq---vivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinil 430 (695)
T KOG0353|consen 354 EDKSGAHQGWIAGEIQ---VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINIL 430 (695)
T ss_pred cccccccccccccceE---EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehh
Confidence 9999988888764433 6888899999999999999999999999999999
Q ss_pred ----------------hhhhhcccCCcceEEEEEEeh
Q 000101 1433 ----------------AVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1433 ----------------AiGRAhRIGQkKeV~VyrLva 1453 (2239)
--||++|-|++-++.+||-.+
T Consensus 431 evctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 431 EVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred hhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 457888888888877766433
No 169
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=7.6e-09 Score=133.76 Aligned_cols=413 Identities=16% Similarity=0.142 Sum_probs=225.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-H---HHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-N---WKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs-Q---W~~Ef~Kwa 1073 (2239)
+...++-|+.|..-|+. |.|.=..||.|||+++...+..... ....+.||+|+..|. + |...|-+|+
T Consensus 76 g~r~ydvQlig~l~Ll~------G~VaEM~TGEGKTLvA~l~a~l~AL---~G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 76 GLRPFDVQLLGALRLLA------GDVIEMATGEGKTLAGAIAAAGYAL---QGRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCCcchHHHHHHHHHhC------CCcccccCCCCHHHHHHHHHHHHHH---cCCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 33455559988866653 4577788999999998655543332 234688889988553 3 666666665
Q ss_pred CCCceEEEecch--hhHHHHHHHHhhcCccEEEEehhHHHHh---------hhhcccCCceEEEecccccccChhhHHHH
Q 000101 1074 PSVSCIYYVGAK--DQRSRLFSQVAALKFNVLVTTYEFIMYD---------RSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1074 Pslkvvvy~Gsk--d~Rk~l~~~i~~~kfdVVITTYE~L~kD---------~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
++.+.+..+.. ..|+.. ...+|+-+|-.-|--| ........+.++||||++.+.=
T Consensus 147 -GLsvg~i~~~~~~~err~a------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI------- 212 (764)
T PRK12326 147 -GLTVGWITEESTPEERRAA------YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV------- 212 (764)
T ss_pred -CCEEEEECCCCCHHHHHHH------HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee-------
Confidence 45555555442 233322 2567777775544322 1222334789999999998741
Q ss_pred HhhccccceEEEecCCCC-CCCHHHHHHHHhhhcCcc-cC----------Ch---HHHHhhhcCCcccCCCCCCCChhhH
Q 000101 1143 DLDRYRCQRRLLLTGTPL-QNDLKELWSLLNLLLPEV-FD----------NR---KAFHDWFSQPFQKEGPTHNADDDWL 1207 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPI-QNnL~ELwsLLnFLlP~i-F~----------s~---k~F~e~F~kPf~~~g~~~~~e~d~l 1207 (2239)
. .+..-|++||.+- .+.+..++.+..-|.++. |. +. ....+.|... ..+
T Consensus 213 --D--eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~-----------~ly- 276 (764)
T PRK12326 213 --D--EALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGI-----------DLY- 276 (764)
T ss_pred --c--cccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCc-----------ccc-
Confidence 1 1344577777542 233333444444443321 10 00 0011111000 000
Q ss_pred HHHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHH---
Q 000101 1208 ETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK--- 1276 (2239)
Q Consensus 1208 ~~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek--- 1276 (2239)
..+.....++.+...|+.. ++.+-+.-+.. +....+|. +.| .+..-+.+.+.....+.+......
T Consensus 277 ~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~---dgeV~iVD-e~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~As 352 (764)
T PRK12326 277 SEEHVGTTLTQVNVALHAHALLQRDVHYIVR---DGKVHLIN-ASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDT 352 (764)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeeh
Confidence 0000011223333333332 33332222222 11111111 122 233444455544433332221100
Q ss_pred ---hhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhcCCeEEE
Q 000101 1277 ---RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRVLL 1348 (2239)
Q Consensus 1277 ---~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~-----s~d~Li~~SGKLelLdrIL~kLkatGhKVLI 1348 (2239)
....+......+...........|+++-+.+.+..|..... ..........|+..+..-+.++.+.|..|||
T Consensus 353 IT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLV 432 (764)
T PRK12326 353 ITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLV 432 (764)
T ss_pred hhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 00000000000000111122345667666655544432211 1111222345888888888888899999999
Q ss_pred EEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcC-------------
Q 000101 1349 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA------------- 1415 (2239)
Q Consensus 1349 FSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA------------- 1415 (2239)
.|..+...+.|...|...|+++..|+..-. ++-.++|.+- +....|.|+|..+|+|.|+.-.
T Consensus 433 gt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A----G~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~ 507 (764)
T PRK12326 433 GTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA----GKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAEL 507 (764)
T ss_pred EeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc----CCCCcEEEEecCCCCccCeecCCCcccchHHHHHc
Confidence 999999999999999999999999988744 3335555543 2333589999999999997733
Q ss_pred --ceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhh
Q 000101 1416 --DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1460 (2239)
Q Consensus 1416 --DtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s 1460 (2239)
=+||....+-|-..+.|..||++|-|......+| ++.|+.+..
T Consensus 508 GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~--lSleDdl~~ 552 (764)
T PRK12326 508 GGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF--VSLEDDVVA 552 (764)
T ss_pred CCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE--EEcchhHHH
Confidence 3889999999999999999999999988776554 345555543
No 170
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.16 E-value=5.7e-09 Score=141.01 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=77.7
Q ss_pred HHHHHHHH-HhcCCeEEEEEccHHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc
Q 000101 1332 LDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1406 (2239)
Q Consensus 1332 LdrIL~kL-katGhKVLIFSQ~t~~LDILed~L~~----rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAG 1406 (2239)
+...|.++ ...+.++|||+....+++.+...|.. .++.+. ..+.. ..|.+++++|+.++.. +|++|...
T Consensus 662 ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~---iLlgt~sf 735 (850)
T TIGR01407 662 IASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKA---ILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCe---EEEEccee
Confidence 33334343 34567899999999999999999875 344433 33332 5789999999874333 78899999
Q ss_pred ccccCCCcC--ceEEEcCCCCC-cc-----------------------------hHHHhhhhhcccCCcceEEE
Q 000101 1407 GRGLNLQSA--DTVIIYDPDPN-PK-----------------------------NEEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1407 GeGLNLqaA--DtVIifDppWN-P~-----------------------------~dlQAiGRAhRIGQkKeV~V 1448 (2239)
.+|||++.. ..|||.-.|+- |. ...|++||+.|-...+-|.+
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred ecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 999999974 47777776652 22 24588888888776665533
No 171
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.14 E-value=4.6e-11 Score=164.01 Aligned_cols=98 Identities=14% Similarity=0.258 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000101 1942 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2021 (2239)
Q Consensus 1942 ck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~ 2021 (2239)
|..|+..|-.+.+ ++.|+++.+.++.||||.| |++||||.||..|+..+.|.+..+|+.||+|||.||.+||+
T Consensus 1306 ~e~il~e~~~~~~------awPFlepVn~~~vp~Y~~I-Ik~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~ 1378 (1404)
T KOG1245|consen 1306 CEDILHELVVHKA------AWPFLEPVNPKEVPDYYDI-IKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNE 1378 (1404)
T ss_pred HHHHHHHHHHhhh------cchhhccCChhhcccHHHH-hcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 8889888877654 7899999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000101 2022 FSHEVRSEARKVHDLFFDLLKIAFPD 2047 (2239)
Q Consensus 2022 ~~sev~~dA~~L~~~f~~~~k~~fP~ 2047 (2239)
. |++++....|+++|..++...||.
T Consensus 1379 ~-s~i~~ag~~l~~ff~~~~~~~~~~ 1403 (1404)
T KOG1245|consen 1379 D-SEIGRAGTCLRRFFHKRWRKKFPV 1403 (1404)
T ss_pred c-hhhhhhcchHHHHHHHHHHhhcCC
Confidence 9 999999999999999999999995
No 172
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.13 E-value=9.4e-11 Score=148.50 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
.+-.+.+.+++|..|.+.+|.+|+++-+.|.++|+|+..|+||.+ |..||.|.-|..||+..+|.+...|..|+.|||.
T Consensus 50 ~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~-i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 50 DPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYV-IQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred ChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCccee-ecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 344556789999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHH------HHhCCCCchHHhhh
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLL------KIAFPDTDFREARS 2055 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~------k~~fP~~df~~a~~ 2055 (2239)
||+.||.++|++|++|+.|.++|.... ....++.++..|+.
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~~~~~d~e~s~~~~~~l~~~~ 175 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLEDEKKDGELSMESNEELKAGG 175 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhhccccchhhccccccccccCC
Confidence 999999999999999999999998855 33445555555544
No 173
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.11 E-value=1e-08 Score=133.65 Aligned_cols=128 Identities=23% Similarity=0.357 Sum_probs=97.5
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
|..++..|.--+..++. +...-+...||+|||--.+...+++.. ++ ++++||+|+. |+.|-.+.+.+++.
T Consensus 80 G~~~ws~QR~WakR~~r----g~SFaiiAPTGvGKTTfg~~~sl~~a~-kg--kr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GFRPWSAQRVWAKRLVR----GKSFAIIAPTGVGKTTFGLLMSLYLAK-KG--KRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CCCchHHHHHHHHHHHc----CCceEEEcCCCCchhHHHHHHHHHHHh-cC--CeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 45788899875555554 444444458999999655444444432 22 6899999987 67788888988873
Q ss_pred ---CCceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccc
Q 000101 1075 ---SVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1075 ---slkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrI 1133 (2239)
.+.++ ||+. ..+++.....+..++|+|+|||-.++.+....|.+.+|++|++|.++.+
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred CCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 23333 8886 5566777888999999999999999999999999999999999999986
No 174
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.10 E-value=3.5e-09 Score=143.64 Aligned_cols=161 Identities=22% Similarity=0.200 Sum_probs=108.2
Q ss_pred CChHHHHHHHHHHHH-----hh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLS-----LY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSE 1068 (2239)
Q Consensus 1000 tLRPYQleGLqwLls-----L~-----~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP-~SLLsQW~~E 1068 (2239)
..|+||.....+.+. .. ..+.+|++.+-+|+|||++++-+...+.+. .....++|||- ..|-.|-..+
T Consensus 244 ~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~ 322 (962)
T COG0610 244 VKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDE 322 (962)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHH
Confidence 566666555544443 11 234579999999999999997777666654 45556666774 5588999999
Q ss_pred HHHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh----hcccCCceEEEecccccccChhhHHHHHh
Q 000101 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKDRESVLARDL 1144 (2239)
Q Consensus 1069 f~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s----~L~kikWd~VIIDEAHrIKN~~SKlskaL 1144 (2239)
|..+........ .......+...+....-.|+|||-+.|..... .....+.-+||+|||||-- .....+.+
T Consensus 323 f~~~~~~~~~~~---~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~~~~ 397 (962)
T COG0610 323 FQSFGKVAFNDP---KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELAKLL 397 (962)
T ss_pred HHHHHHhhhhcc---cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHHHHH
Confidence 999876544333 23334445455555566899999998876542 2345678899999999963 33444444
Q ss_pred h-ccccceEEEecCCCCCCCHHH
Q 000101 1145 D-RYRCQRRLLLTGTPLQNDLKE 1166 (2239)
Q Consensus 1145 k-~Lka~rRLLLTGTPIQNnL~E 1166 (2239)
+ .|....-+++||||+...-..
T Consensus 398 ~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 398 KKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred HHHhccceEEEeeCCcccccccc
Confidence 4 455577899999998755333
No 175
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=4.5e-08 Score=129.32 Aligned_cols=156 Identities=14% Similarity=0.159 Sum_probs=113.9
Q ss_pred HHHHHHcCCCCCCCCCccc-----cchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEe
Q 000101 1298 MELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1372 (2239)
Q Consensus 1298 mqLRKiCnHP~L~~p~~~~-----~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~R 1372 (2239)
..|.++-+.+.+..|.... ...........|+..+.+-+..+.+.|..|||-|.++...+.|..+|...|+++-.
T Consensus 399 ~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~V 478 (913)
T PRK13103 399 FEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKV 478 (913)
T ss_pred HHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHH
Confidence 3566666665554443221 11112233456888888888889999999999999999999999999999999988
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCC-------------------------------------cC
Q 000101 1373 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ-------------------------------------SA 1415 (2239)
Q Consensus 1373 LDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLq-------------------------------------aA 1415 (2239)
|+-... +.-..+|.+ ++ ..-.|.|+|..+|+|.|+. .-
T Consensus 479 LNAk~~-~~EA~IIa~--AG--~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GG 553 (913)
T PRK13103 479 LNAKYH-EKEAEIIAQ--AG--RPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGG 553 (913)
T ss_pred hccccc-hhHHHHHHc--CC--CCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCC
Confidence 877643 333445543 22 2335899999999999985 23
Q ss_pred ceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhh
Q 000101 1416 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1460 (2239)
Q Consensus 1416 DtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s 1460 (2239)
=+||.-..+-|-..+.|..||++|-|.......|. +.|+.+..
T Consensus 554 LhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l--SlED~Lmr 596 (913)
T PRK13103 554 LHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL--SLEDSLMR 596 (913)
T ss_pred CEEEeeccCchHHHHHHhccccccCCCCCceEEEE--EcCcHHHH
Confidence 38899999999999999999999999887765543 34555443
No 176
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.08 E-value=1.6e-09 Score=123.47 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC--CeEEEechH-HHHHHHHHHH---HHCCC
Q 000101 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG--PHLIIVPNA-VLVNWKSELH---KWLPS 1075 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~G--P~LIVVP~S-LLsQW~~Ef~---KwaPs 1075 (2239)
-+-|.+++...+- +...|.-.-.|+|||..+. ++.|....+..| .+||+|-+. |.-|..+|+. ++.|+
T Consensus 66 sevqhecipqail----gmdvlcqaksgmgktavfv--l~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 66 SEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFV--LATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred hHhhhhhhhHHhh----cchhheecccCCCceeeee--hhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 3467888876665 5555666789999996543 334433333333 568888766 7778887755 55799
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEeccccccc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMK 1134 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIK 1134 (2239)
+++.++.|+-...+.. . ....-++|+|.|++.+.... ..|.-.+....|||||+.|.
T Consensus 140 vkvaVFfGG~~Ikkde-e-~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKKDE-E-LLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred ceEEEEEcceeccccH-H-HHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 9999998876544321 1 22237899999999987542 34555577899999999875
No 177
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.08 E-value=7.6e-10 Score=132.49 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=89.3
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcC---CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rG---iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
.-.|+||||....-+|-|+.+|+.+| |.++-+||..++.+|..-|+.|...+-. |||+|+++++|||++..-.+
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFM 580 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceE
Confidence 35689999999999999999999875 6788999999999999999999976655 99999999999999999999
Q ss_pred EEcCCCCCcchHHHhhhhhcccC
Q 000101 1419 IIYDPDPNPKNEEQAVARAHRIG 1441 (2239)
Q Consensus 1419 IifDppWNP~~dlQAiGRAhRIG 1441 (2239)
|+...|-.-.+|.+||||++|.-
T Consensus 581 invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEEecCcccchhhhhhhccchhh
Confidence 99999999999999999998853
No 178
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.05 E-value=4.5e-08 Score=126.51 Aligned_cols=154 Identities=20% Similarity=0.211 Sum_probs=104.4
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQ-W~~Ef~KwaPsl 1076 (2239)
..+|-.+|++++..|.. +-...+|.-|-.|||+.|=..|+--. . ...+++.-.|...|+| =.++|+.-+..+
T Consensus 295 pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAialaq-~--h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALAQ-K--HMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHHH-h--hccceEecchhhhhccchHHHHHHhcccc
Confidence 45899999999987775 88889999999999998855543222 1 2236677779776665 456777777665
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----hhcccCCceEEEecccccccChhh-HHHH-Hhhccccc
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQRMKDRES-VLAR-DLDRYRCQ 1150 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s~L~kikWd~VIIDEAHrIKN~~S-Klsk-aLk~Lka~ 1150 (2239)
. +..|... ......++|+|-+.|+.-. +.+. +...||+||.|.+.+-.. -.|. .+..++.+
T Consensus 368 g--LlTGDvq---------inPeAsCLIMTTEILRsMLYrgadliR--DvE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 368 G--LLTGDVQ---------INPEASCLIMTTEILRSMLYRGADLIR--DVEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred c--eeeccee---------eCCCcceEeehHHHHHHHHhcccchhh--ccceEEEeeeeecccccccccceeeeeecccc
Confidence 5 5556532 2346689999999987642 2232 466799999999965222 2333 33344443
Q ss_pred -eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcC
Q 000101 1151 -RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1191 (2239)
Q Consensus 1151 -rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~k 1191 (2239)
..++||||- .+..+|..|++.
T Consensus 435 V~~IlLSATV--------------------PN~~EFA~WIGR 456 (1248)
T KOG0947|consen 435 VNFILLSATV--------------------PNTLEFADWIGR 456 (1248)
T ss_pred ceEEEEeccC--------------------CChHHHHHHhhh
Confidence 368899992 234678888864
No 179
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=1.8e-07 Score=122.83 Aligned_cols=404 Identities=16% Similarity=0.240 Sum_probs=220.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HH---HHHHHHHHHHCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VL---VNWKSELHKWLPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LL---sQW~~Ef~KwaPs 1075 (2239)
..++-|+.|.--|. .|.|.=..||=|||+++.. .+||....+ ..+-||+.+. |. ..|...|.+|+.
T Consensus 78 r~ydVQliGglvLh------~G~IAEMkTGEGKTLvAtL-payLnAL~G--kgVhVVTvNdYLA~RDae~mg~vy~fLG- 147 (925)
T PRK12903 78 RPYDVQIIGGIILD------LGSVAEMKTGEGKTITSIA-PVYLNALTG--KGVIVSTVNEYLAERDAEEMGKVFNFLG- 147 (925)
T ss_pred CcCchHHHHHHHHh------cCCeeeecCCCCccHHHHH-HHHHHHhcC--CceEEEecchhhhhhhHHHHHHHHHHhC-
Confidence 44455888874332 3557778999999998644 344433222 3445555555 44 349999999985
Q ss_pred CceEEE-ec-chhhHHHHHHHHhhcCccEEEEehhHHHHh---------hhhcccCCceEEEecccccccChhhHHHHHh
Q 000101 1076 VSCIYY-VG-AKDQRSRLFSQVAALKFNVLVTTYEFIMYD---------RSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1144 (2239)
Q Consensus 1076 lkvvvy-~G-skd~Rk~l~~~i~~~kfdVVITTYE~L~kD---------~s~L~kikWd~VIIDEAHrIKN~~SKlskaL 1144 (2239)
+.|-+. .+ ....|+.. ...+|+-+|..-|--| ...+....+.|+||||++.+.=..
T Consensus 148 LsvG~i~~~~~~~~rr~a------Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDE------- 214 (925)
T PRK12903 148 LSVGINKANMDPNLKREA------YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDE------- 214 (925)
T ss_pred CceeeeCCCCChHHHHHh------ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecc-------
Confidence 333332 23 33444433 2567887776554332 122334578899999999874111
Q ss_pred hccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCC-----------------hHHHHhhhcCCcccCCCCCCCChhhH
Q 000101 1145 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN-----------------RKAFHDWFSQPFQKEGPTHNADDDWL 1207 (2239)
Q Consensus 1145 k~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s-----------------~k~F~e~F~kPf~~~g~~~~~e~d~l 1207 (2239)
+..-|++||.+ ... .++|..++-+-+.+-.. .....+.|... + +
T Consensus 215 ----ArTPLIISg~~-~~~-~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~--n-----------L 275 (925)
T PRK12903 215 ----AKTPLIISGGQ-SND-SNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLK--N-----------L 275 (925)
T ss_pred ----cCCcccccCCC-ccc-hHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCC--c-----------c
Confidence 12235566643 222 24555444332211100 00111111100 0 0
Q ss_pred HHHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHHhhh
Q 000101 1208 ETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKRRV 1279 (2239)
Q Consensus 1208 ~~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek~~l 1279 (2239)
........++.+...|+.. ++.|-+.-+.. +....+|. ..| .+..-+.+.+.....+.+..... .+
T Consensus 276 y~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~---dg~V~IVD-efTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~--Tl 349 (925)
T PRK12903 276 YDIENSELVHRIQNALRAHKVMKEDVEYIVR---DGKIELVD-QFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETK--TL 349 (925)
T ss_pred cChhhHHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCCCCCCCccchHHHHHHHHHcCCCCCCCce--ee
Confidence 0111122334444455443 33333333322 11122221 122 23334444444333222222110 00
Q ss_pred hcChhhH--HHHHHH-------HHHHHHHHHHHcCCCCCCCCCccccc----hh-hHhhcccHHHHHHHHHHHHHhcCCe
Q 000101 1280 QKNPIYQ--AKVYKT-------LNNRCMELRKTCNHPLLNYPYFSDLS----KD-FLVKSCGKLWILDRILIKLQRTGHR 1345 (2239)
Q Consensus 1280 ~k~~~~~--~k~~ks-------L~niImqLRKiCnHP~L~~p~~~~~s----~d-~Li~~SGKLelLdrIL~kLkatGhK 1345 (2239)
..- .++ -+.|.. ....-..+.++-+...+..|...... .+ .......|+..+..-+.++..+|..
T Consensus 350 AsI-T~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqP 428 (925)
T PRK12903 350 ATI-TYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQP 428 (925)
T ss_pred eee-hHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCC
Confidence 000 000 000110 01112356666666655544432211 11 1223447888888888888889999
Q ss_pred EEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCc--------e
Q 000101 1346 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD--------T 1417 (2239)
Q Consensus 1346 VLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaAD--------t 1417 (2239)
|||.|..+...+.|..+|...|+++..|+.... +.-..+|. ++ +....|.|+|..+|+|.|+.-.. +
T Consensus 429 VLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~A--G~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLh 503 (925)
T PRK12903 429 ILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KA--GQKGAITIATNMAGRGTDIKLSKEVLELGGLY 503 (925)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hC--CCCCeEEEecccccCCcCccCchhHHHcCCcE
Confidence 999999999999999999999999999988643 22234443 33 33345899999999999988544 8
Q ss_pred EEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1418 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1418 VIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
||....+-|-..+.|..||++|-|.....+.|. ++++.+.
T Consensus 504 VIgTerheSrRIDnQLrGRaGRQGDpGss~f~l--SLeD~L~ 543 (925)
T PRK12903 504 VLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI--SLDDQLF 543 (925)
T ss_pred EEecccCchHHHHHHHhcccccCCCCCcceEEE--ecchHHH
Confidence 999999999999999999999999887765542 3444444
No 180
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.04 E-value=7.5e-09 Score=135.91 Aligned_cols=157 Identities=22% Similarity=0.175 Sum_probs=97.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--------CCCeEEEech-HHHHHHHHHHHHHCCCCceEEEecchhhHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGN--------YGPHLIIVPN-AVLVNWKSELHKWLPSVSCIYYVGAKDQRS 1089 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~--------~GP~LIVVP~-SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk 1089 (2239)
..|-+||..+|.|||..|+.-|+.-+..+.+ ...+.-|+|. +|+..|+..|.+|+..+.+.+..-+.+...
T Consensus 325 ~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l 404 (1674)
T KOG0951|consen 325 DENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL 404 (1674)
T ss_pred cCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc
Confidence 4566999999999998887766654432221 1256778895 588889999999998777666554444321
Q ss_pred HHHHHHhhcCccEEEEehhHH-H--Hhhhhcc-cCCceEEEeccccccc-ChhhHH----HHHhhcc----ccceEEEec
Q 000101 1090 RLFSQVAALKFNVLVTTYEFI-M--YDRSKLS-KVDWKYIIIDEAQRMK-DRESVL----ARDLDRY----RCQRRLLLT 1156 (2239)
Q Consensus 1090 ~l~~~i~~~kfdVVITTYE~L-~--kD~s~L~-kikWd~VIIDEAHrIK-N~~SKl----skaLk~L----ka~rRLLLT 1156 (2239)
-. ......+|+|||++.. . +.-.... .--++++||||.|.+- +++..+ .++..+. ...+.++||
T Consensus 405 ~~---~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLS 481 (1674)
T KOG0951|consen 405 GK---EQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLS 481 (1674)
T ss_pred hh---hhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeec
Confidence 11 2234678999999865 1 1100011 1135789999999993 333333 3333333 234578999
Q ss_pred CCCCCCCHHHHHHHHhhhcCcccC
Q 000101 1157 GTPLQNDLKELWSLLNLLLPEVFD 1180 (2239)
Q Consensus 1157 GTPIQNnL~ELwsLLnFLlP~iF~ 1180 (2239)
||- -|..|.-+.|..-.+++|.
T Consensus 482 ATL--PNy~DV~~Fl~v~~~glf~ 503 (1674)
T KOG0951|consen 482 ATL--PNYEDVASFLRVDPEGLFY 503 (1674)
T ss_pred ccC--CchhhhHHHhccCcccccc
Confidence 993 3556666655443456654
No 181
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.02 E-value=2.3e-11 Score=125.15 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=76.7
Q ss_pred cccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000101 1705 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1781 (2239)
Q Consensus 1705 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1781 (2239)
+.++. +.++|++.+ +++||+++++| .+|++..|||||++|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 3 ~~~~~-l~~~i~~~~-----d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~ 75 (103)
T cd05517 3 QILEQ-LLEAVMTAT-----DPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKT-IAQRIQSGYYKSIEDMEKDLDLMV 75 (103)
T ss_pred HHHHH-HHHHHHHhh-----CcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHH-HHHHHCcCCCCCHHHHHHHHHHHH
Confidence 45666 888899998 67999999999 99999999999999999999999 9999999999999999999998
Q ss_pred --------CCCccccCCccccccccc
Q 000101 1782 --------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
+||+++ .++..|+
T Consensus 76 ~Na~~yN~~~s~i~-----~~A~~l~ 96 (103)
T cd05517 76 KNAKTFNEPGSQVY-----KDANAIK 96 (103)
T ss_pred HHHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 8887766
No 182
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.93 E-value=8.6e-11 Score=121.58 Aligned_cols=86 Identities=15% Similarity=0.054 Sum_probs=77.3
Q ss_pred ccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000101 1706 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1781 (2239)
Q Consensus 1706 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1781 (2239)
.++. +.++|.+.. +.+|++++++| .+|++..|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 6 ~l~~-i~~~i~~~k-----d~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~t-I~~kl~~~~Y~s~~ef~~D~~l~f~ 78 (106)
T cd05525 6 VLKE-ICDAIITYK-----DSNGQSLAIPFINLPSKKKNPDYYERITDPVDLST-IEKQILTGYYKTPEAFDSDMLKVFR 78 (106)
T ss_pred HHHH-HHHHHHHhh-----ccCCCcccHhhccCCCcccCCchhhhCCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 3455 777888888 67899999999 99999999999999999999999 9999999999999999999999
Q ss_pred -------CCCccccCCccccccccc-cccc
Q 000101 1782 -------SGSWTHDRDEGEDEQVLQ-PKIK 1803 (2239)
Q Consensus 1782 -------~~Sw~~~~~~~~d~~~~~-~~~~ 1803 (2239)
+||+|+ .++..|+ .+..
T Consensus 79 Na~~yn~~~S~i~-----~~A~~L~~~f~~ 103 (106)
T cd05525 79 NAEKYYGRKSPIG-----RDVCRLRKAYYQ 103 (106)
T ss_pred HHHHHCCCCCHHH-----HHHHHHHHHHHH
Confidence 999999 8888877 4433
No 183
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.87 E-value=2e-07 Score=122.54 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=107.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
.|-+-|..++.-+..........+|.--||+|||-..+-+|...+. . .+-+||+||.- +..|-...|...++ .++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-~--GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-Q--GKQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-c--CCEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 6778899999998876522344599999999999999999988775 2 35799999965 88998889988887 666
Q ss_pred EEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccc--cChhhHH--HHHh---hcccc
Q 000101 1079 IYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRESVL--ARDL---DRYRC 1149 (2239)
Q Consensus 1079 vvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrI--KN~~SKl--skaL---k~Lka 1149 (2239)
.+++.. ..+|.+.+.....+...|||.|...+.- .-.+..+|||||=|.- |..+... .+.+ .....
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~-----Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~ 348 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKE 348 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC-----chhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHh
Confidence 666654 4455556666778899999999877642 2235679999999974 4322211 1122 22222
Q ss_pred c-eEEEecCCC
Q 000101 1150 Q-RRLLLTGTP 1159 (2239)
Q Consensus 1150 ~-rRLLLTGTP 1159 (2239)
. -.++=||||
T Consensus 349 ~~pvvLgSATP 359 (730)
T COG1198 349 NAPVVLGSATP 359 (730)
T ss_pred CCCEEEecCCC
Confidence 2 355569999
No 184
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=98.85 E-value=3.2e-10 Score=140.04 Aligned_cols=192 Identities=15% Similarity=0.137 Sum_probs=142.8
Q ss_pred CCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000101 1725 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1793 (2239)
Q Consensus 1725 ~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1793 (2239)
.-+|+.++.+| .+||++.||+||.+|+.||||.+ |..+|..|.|.++.++-.||.+ |+||++ .
T Consensus 159 ~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~-i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~-----~ 232 (371)
T COG5076 159 LRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLT-IQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVY-----V 232 (371)
T ss_pred cccccccccccccCCccccCCChheeecchhhHHH-HHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchh-----h
Confidence 56999999999 99999999999999999999999 9999999999999999999997 333333 1
Q ss_pred ccccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCc
Q 000101 1794 DEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSS 1873 (2239)
Q Consensus 1794 d~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 1873 (2239)
++..++
T Consensus 233 ~a~~l~-------------------------------------------------------------------------- 238 (371)
T COG5076 233 DAKELE-------------------------------------------------------------------------- 238 (371)
T ss_pred hhHHHH--------------------------------------------------------------------------
Confidence 111111
Q ss_pred ccccCCCccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhh
Q 000101 1874 KSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRI 1953 (2239)
Q Consensus 1874 ~~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kl~~~~ 1953 (2239)
+.+-.+ +..-.....++.. .++... ..+ ....+ .-
T Consensus 239 ~~~~~~----------------------i~~~~~~~~~~~~---------~~~~~~------~~~------~~~~~--i~ 273 (371)
T COG5076 239 KYFLKL----------------------IEEIPEEMLELSI---------KPGREE------REE------RESVL--IT 273 (371)
T ss_pred HHHHHH----------------------HHhccccchhhcc---------Cccccc------ccc------chhhc--cc
Confidence 000000 0000001011111 111101 111 11011 11
Q ss_pred ccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHH
Q 000101 1954 EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKV 2033 (2239)
Q Consensus 1954 d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L 2033 (2239)
+...+.-.+.|+..|++.+.|+||+. |..++|+.+...++....|..+.+|..|..+|++||..||+.--..+..+..+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (371)
T COG5076 274 NSQAHVGAWPFLRPVSDEEVPDYYKD-IRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVL 352 (371)
T ss_pred ccccccccccccccCCcccccchhhh-hhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccch
Confidence 33666778889999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000101 2034 HDLFFDLLK 2042 (2239)
Q Consensus 2034 ~~~f~~~~k 2042 (2239)
.++|...+.
T Consensus 353 ~~~~~~~~~ 361 (371)
T COG5076 353 EDFVIKKTR 361 (371)
T ss_pred hhhHhhhhh
Confidence 999887654
No 185
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.85 E-value=2.1e-09 Score=138.36 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=85.8
Q ss_pred CCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHH
Q 000101 1956 EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHD 2035 (2239)
Q Consensus 1956 ~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~ 2035 (2239)
..|.=.+.|+..-.+.+.||||.+ |.+||||++|+.+|+.+.|..+.+|++|+..+|.||+-||+..++-|+.|..|..
T Consensus 619 ~~h~~awPf~~Pv~~~e~pdyy~~-I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~ 697 (720)
T KOG1472|consen 619 QNHGDAWPFLKPVNKKEVPDYYDV-IKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEK 697 (720)
T ss_pred hcCCccCCccCccccccCCcHHHH-hcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheecccchhh
Confidence 345567899999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 000101 2036 LFFDLLKIAFP 2046 (2239)
Q Consensus 2036 ~f~~~~k~~fP 2046 (2239)
+|..+|+..++
T Consensus 698 ~~~~k~~~~i~ 708 (720)
T KOG1472|consen 698 FFLFKLNELIL 708 (720)
T ss_pred hhcchhhhhhh
Confidence 99999998876
No 186
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.85 E-value=1.8e-10 Score=119.42 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=75.7
Q ss_pred ccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000101 1706 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1781 (2239)
Q Consensus 1706 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1781 (2239)
.+.. +.++++... +++||+++++| .+|++..|||||.+|++||||+. |..+|+.|+|.++.|+..|+.+
T Consensus 5 ~~~~-il~~v~~~~-----d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~li~~ 77 (107)
T cd05516 5 KMNK-IVDVVIKYK-----DSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLEDLEKDVMLLCQ 77 (107)
T ss_pred HHHH-HHHHHHhhh-----CcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHH
Confidence 3444 677788887 66899999999 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccccc
Q 000101 1782 -------SGSWTHDRDEGEDEQVLQPK 1801 (2239)
Q Consensus 1782 -------~~Sw~~~~~~~~d~~~~~~~ 1801 (2239)
+||+|+ .++..|+-.
T Consensus 78 Na~~yN~~~s~i~-----~~a~~l~~~ 99 (107)
T cd05516 78 NAQTFNLEGSLIY-----EDSIVLQSV 99 (107)
T ss_pred HHHHHCCCCCHHH-----HHHHHHHHH
Confidence 999999 888887733
No 187
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.83 E-value=5.3e-08 Score=117.17 Aligned_cols=208 Identities=19% Similarity=0.239 Sum_probs=118.0
Q ss_pred eEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChh----hHHHHHHHHHHHHHHHHHHcCCCCCCCCCcc---
Q 000101 1243 VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPI----YQAKVYKTLNNRCMELRKTCNHPLLNYPYFS--- 1315 (2239)
Q Consensus 1243 ~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~----~~~k~~ksL~niImqLRKiCnHP~L~~p~~~--- 1315 (2239)
.++.+.++|+..|+.+|+.+.......+...-+ ....... ........+...+..|+.+|+||+|....+-
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ 81 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCE--TNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQ 81 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHH--STTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHc--ccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccc
Confidence 357788999999999999876543211111000 0000000 0012336677788999999999999654431
Q ss_pred ---ccchhhHhhcccHHHHHHHHHHHH-----HhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH-
Q 000101 1316 ---DLSKDFLVKSCGKLWILDRILIKL-----QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI- 1386 (2239)
Q Consensus 1316 ---~~s~d~Li~~SGKLelLdrIL~kL-----katGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL- 1386 (2239)
......+...||||.+|.++|..+ ...+.++||.|+...++|+|+.+|..+++.|.|++|..-.++....-
T Consensus 82 ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~ 161 (297)
T PF11496_consen 82 LLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPK 161 (297)
T ss_dssp S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S--
T ss_pred cccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCc
Confidence 123456788999999999999999 66788999999999999999999999999999999976554433322
Q ss_pred -----------HHHh-cCCCCccEEEEeccccccc----cCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1387 -----------VDFN-SHDSDCFIFLLSIRAAGRG----LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1387 -----------~~FN-s~ds~~~VfLLSTrAGGeG----LNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.... .+...+.|+|++++-.... ++-..+|.||-||+.+|+....-..=|..--.. +.+-|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~Piir 240 (297)
T PF11496_consen 162 NGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIR 240 (297)
T ss_dssp --------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEE
T ss_pred ccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEE
Confidence 1111 1234567778887755442 334468999999999999875544444433222 7788888
Q ss_pred Eeh
Q 000101 1451 MEA 1453 (2239)
Q Consensus 1451 Lva 1453 (2239)
++.
T Consensus 241 Lv~ 243 (297)
T PF11496_consen 241 LVP 243 (297)
T ss_dssp EEE
T ss_pred Eee
Confidence 865
No 188
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.83 E-value=3.3e-10 Score=116.69 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=73.3
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+.+++.+++ +.+||+++.+| .+|++..|||||.+|++||||.. |..+|+.|+|.++.++..|+.+
T Consensus 8 l~~~i~~~~-----~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05520 8 LYDTIRNAR-----NNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQ-IRTKLKNGEYETLEELEADLNLMFENAKRY 81 (103)
T ss_pred HHHHHHhhc-----CCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 677788888 67899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCcccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQP 1800 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~~ 1800 (2239)
+||+++ .++..|+-
T Consensus 82 N~~~s~i~-----~~A~~L~~ 97 (103)
T cd05520 82 NVPNSRIY-----KDAEKLQK 97 (103)
T ss_pred CCCCCHHH-----HHHHHHHH
Confidence 899999 88877773
No 189
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.80 E-value=4.4e-10 Score=116.11 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=75.8
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+.+.+...+ +++||+++.+| .+|++..|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 8 ~~~~i~~~~-----d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 8 LYNAVKNYT-----DGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEK-IRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred HHHHHHHhh-----CcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 667788888 67899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCccccccccc-cccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQ-PKIKRK 1805 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~-~~~~rk 1805 (2239)
+||+++ .++..|+ -+..++
T Consensus 82 N~~~s~i~-----~~A~~L~~~~~~~~ 103 (105)
T cd05515 82 NEPDSQIY-----KDALTLQKVLLETK 103 (105)
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHH
Confidence 999999 8998888 444443
No 190
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.78 E-value=6e-10 Score=114.85 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=74.8
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+.+.|++.. +.+||.++++| .+|++..|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 8 l~~~v~~~~-----d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 81 (103)
T cd05518 8 LFLYVLEYR-----EGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKT-IEHNIRNDKYATEEELMDDFKLMFRNARHY 81 (103)
T ss_pred HHHHHHHhh-----ccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 566677777 67999999999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccccCCccccccccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQPKIKRK 1805 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~~~~~rk 1805 (2239)
+||+|+ .++..|+-.++.|
T Consensus 82 N~~~s~i~-----~~A~~le~~~~~~ 102 (103)
T cd05518 82 NEEGSQVY-----EDANILEKVLKEK 102 (103)
T ss_pred CCCCCHHH-----HHHHHHHHHHHhc
Confidence 999999 8887777444433
No 191
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.77 E-value=2e-07 Score=124.77 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=110.1
Q ss_pred cCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000101 997 RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2239)
Q Consensus 997 ~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs 1075 (2239)
.+.+|-++|.+++.-+.. +.+.++|..||.|||+.+-..+..-+. .+ ..++-..|.. |..|=..+|..-+..
T Consensus 116 ~~F~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~-~~--qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALR-DG--QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHH-cC--CceEeccchhhhhhhHHHHHHHHhhh
Confidence 357999999999976665 889999999999999999887766553 22 2478888966 555566666665543
Q ss_pred C--ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHHhhcccc
Q 000101 1076 V--SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRC 1149 (2239)
Q Consensus 1076 l--kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka 1149 (2239)
+ .+-++.|... ...+..|+|.|-+.|++-. ....-.....||+||.|.|.. .+.-.-..+..+++
T Consensus 189 v~~~vGL~TGDv~---------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~ 259 (1041)
T COG4581 189 VADMVGLMTGDVS---------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD 259 (1041)
T ss_pred hhhhccceeccee---------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCC
Confidence 2 2344555432 2346678888878887542 222223567799999999965 33344445556666
Q ss_pred c-eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcC
Q 000101 1150 Q-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1191 (2239)
Q Consensus 1150 ~-rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~k 1191 (2239)
. +.++|||| .++..+|..|+..
T Consensus 260 ~v~~v~LSAT--------------------v~N~~EF~~Wi~~ 282 (1041)
T COG4581 260 HVRFVFLSAT--------------------VPNAEEFAEWIQR 282 (1041)
T ss_pred CCcEEEEeCC--------------------CCCHHHHHHHHHh
Confidence 5 67889999 3556889999874
No 192
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.74 E-value=6.7e-10 Score=115.37 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=76.5
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
++++|+++. +++||+++++| .||+ .+|+||.+|++||||.+ |..+|+.|+|.++.++..|+.+
T Consensus 11 l~~~V~~~~-----D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~-Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~y 82 (110)
T cd05526 11 LFVSVMNHQ-----DEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDI-IKRNVDKGRYRRLDKFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHhcc-----CCCCCCchHHHHHCCC--cccCchhhhcCCccHHH-HHHHHHcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 788899999 78999999999 9999 77888999999999999 9999999999999999999998
Q ss_pred --CCCccccCCcccccccccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQPKIKRKR 1806 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~~~~~rkr 1806 (2239)
+||.|+ +|+.+||-.+.++|
T Consensus 83 N~~~S~iy-----~dA~eLq~~f~~~r 104 (110)
T cd05526 83 SRTDSEIY-----EDAVELQQFFIKIR 104 (110)
T ss_pred CcccCHHH-----HHHHHHHHHHHHHH
Confidence 999999 99999996655554
No 193
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.74 E-value=2.6e-07 Score=123.09 Aligned_cols=74 Identities=19% Similarity=0.108 Sum_probs=60.4
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
-..+||.|.+-...+...+..+.++||-..||+|||+.+|+..+......+...++++.+.+. -+.|..+|+++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 335799999999999999999999999999999999999887766554444445666666765 68889999988
No 194
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.73 E-value=6.8e-06 Score=108.94 Aligned_cols=366 Identities=16% Similarity=0.197 Sum_probs=184.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs----QW~~Ef~Kwa 1073 (2239)
|...++-|+-|.--| ..|.|.=..||-|||+++..+ +++... ....+-||+++.-|. .|...|-+|+
T Consensus 74 G~r~ydvQlig~l~L------~~G~IaEm~TGEGKTL~a~l~-ayl~aL--~G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 74 GLRHFDVQLIGGLVL------NDGKIAEMKTGEGKTLVATLP-AYLNAL--TGKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred CCCCCchHhhhhHhh------cCCccccccCCCCchHHHHHH-HHHHHh--cCCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 334556688886433 235577789999999976443 444332 234677888877443 4999999998
Q ss_pred CCCceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHH-----Hhh----hhcccCCceEEEecccccccChhhHHHH
Q 000101 1074 PSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIM-----YDR----SKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1074 Pslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~-----kD~----s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
+ +.+-+..+. ...|+.. ...+|+-+|-.-+- ... .......+.++||||++.+.=
T Consensus 145 G-Lsvg~i~~~~~~~err~a------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLI------- 210 (870)
T CHL00122 145 G-LTVGLIQEGMSSEERKKN------YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILI------- 210 (870)
T ss_pred C-CceeeeCCCCChHHHHHh------cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhee-------
Confidence 5 444444332 2333322 35577777754332 221 122334689999999998741
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhh----cCcc-cC----------Ch--HHHHhhhcCCcccCCCCCCCChh
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLL----LPEV-FD----------NR--KAFHDWFSQPFQKEGPTHNADDD 1205 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFL----lP~i-F~----------s~--k~F~e~F~kPf~~~g~~~~~e~d 1205 (2239)
.. +..-|++||-+-. ..++|...+-+ ..+. |. +. -.+.+.|.. +.+
T Consensus 211 --De--ArTPLiISg~~~~--~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~-i~~---------- 273 (870)
T CHL00122 211 --DE--ARTPLIISGQSKT--NIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILK-IED---------- 273 (870)
T ss_pred --cc--CCCceeccCCCcc--chHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcC-Ccc----------
Confidence 11 1233677775432 23455444332 2221 00 00 011111100 000
Q ss_pred hHHHHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHHh
Q 000101 1206 WLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR 1277 (2239)
Q Consensus 1206 ~l~~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek~ 1277 (2239)
+..... ..++.+...|+.. ++.+-+.-+.. +....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 274 -ly~~~~-~~~~~i~~AL~A~~lf~~d~dYiV~---dgeV~iVD-e~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tl 347 (870)
T CHL00122 274 -LYSAND-PWIPYILNALKAKELFFKNVHYIVR---NNEIIIVD-EFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETL 347 (870)
T ss_pred -cccccc-HHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCcCCCCCccchHHHHHHHhhcCCCCCCCceee
Confidence 000000 1122233333332 22322222221 11112221 122 2334444445443333222211000
Q ss_pred ------hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hhhHh-hcccHHHHHHHHHHHHHhcCCeE
Q 000101 1278 ------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDFLV-KSCGKLWILDRILIKLQRTGHRV 1346 (2239)
Q Consensus 1278 ------~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s----~d~Li-~~SGKLelLdrIL~kLkatGhKV 1346 (2239)
...+......+........-..|+++-+-..+..|...... .+.+. ....|+..+..-+..+...|..|
T Consensus 348 AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPV 427 (870)
T CHL00122 348 ASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPI 427 (870)
T ss_pred eeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 00000000000000111123456666666555444332111 11222 23357777777777788899999
Q ss_pred EEEEccHHHHHHHHHHHHHcCCeEEeecCCC-CHHHHHHHHHHHhcCCCCccEEEEeccccccccCCC
Q 000101 1347 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTT-SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 1413 (2239)
Q Consensus 1347 LIFSQ~t~~LDILed~L~~rGiky~RLDGst-s~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLq 1413 (2239)
||-|..+...+.|..+|...|+++..|+... ..+.-..+|.+= +..-.|-|+|..+|+|.|+.
T Consensus 428 LIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A----G~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 428 LIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA----GRKGSITIATNMAGRGTDII 491 (870)
T ss_pred EEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc----CCCCcEEEeccccCCCcCee
Confidence 9999999999999999999999999999874 334445566552 23335899999999997753
No 195
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.71 E-value=1.2e-06 Score=114.56 Aligned_cols=68 Identities=22% Similarity=0.240 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 1005 QIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
|.+-+.++...+.++...|+-..||+|||+.++..+..... .....++||++|+. |..|+..++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~-~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK-ERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH-hccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 77888888888888877788899999999999887765543 22346899999977 7788888876554
No 196
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.68 E-value=6.6e-06 Score=112.70 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=77.7
Q ss_pred HHHHHHHHHH-hcCCeEEEEEccHHHHHHHHHHHHHcCC--eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000101 1331 ILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1407 (2239)
Q Consensus 1331 lLdrIL~kLk-atGhKVLIFSQ~t~~LDILed~L~~rGi--ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGG 1407 (2239)
.+.+.|..+. ..+.++|||+....++..+.++|..... .+..+.-+++...|.+++++|+..+. .+|+.+....
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~---~iLlG~~sFw 815 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK---AILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC---eEEEecCccc
Confidence 4444444443 4667899998888999988888865422 12223323333468899999986433 3788899999
Q ss_pred cccCCCc--CceEEEcCCCC-Ccch-----------------------------HHHhhhhhcccCCcceE
Q 000101 1408 RGLNLQS--ADTVIIYDPDP-NPKN-----------------------------EEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1408 eGLNLqa--ADtVIifDppW-NP~~-----------------------------dlQAiGRAhRIGQkKeV 1446 (2239)
+|||++. +..|||.-.|+ +|.. +.|++||..|-.+.+-|
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT 886 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE
Confidence 9999996 58899998887 4542 24777888887666554
No 197
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.65 E-value=2.3e-06 Score=115.50 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccc
Q 000101 1331 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 1410 (2239)
Q Consensus 1331 lLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGL 1410 (2239)
.+...|..+...+.++|||+....++..+.+.|....+.. ...|... .|.+++++|+..+.. +|+.|....+||
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 4445555555678899999999999999888887655444 4445332 356799999874333 789999999999
Q ss_pred CCC--cCceEEEcCCCC
Q 000101 1411 NLQ--SADTVIIYDPDP 1425 (2239)
Q Consensus 1411 NLq--aADtVIifDppW 1425 (2239)
|++ .+..|||.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 997 466678877663
No 198
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.64 E-value=2.3e-09 Score=110.43 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=72.4
Q ss_pred cccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----
Q 000101 1707 SENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ---- 1781 (2239)
Q Consensus 1707 ~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~---- 1781 (2239)
+.. +.+++++.. +.+||+++.+| .+|++..+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 5 ~~~-i~~~v~~~~-----~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~-I~~kl~~~~Y~s~~~f~~D~~li~~N 77 (103)
T cd05519 5 MLE-IYDAVLNCE-----DETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQ-IKRRIEGRAYKSLEEFLEDFHLMFAN 77 (103)
T ss_pred HHH-HHHHHHHhc-----CcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 445 677788887 66899999999 99999999999999999999999 9999999999999999999999
Q ss_pred ------CCCccccCCccccccccc
Q 000101 1782 ------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 ------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ .++..|+
T Consensus 78 a~~yn~~~s~i~-----~~A~~l~ 96 (103)
T cd05519 78 ARTYNQEGSIVY-----EDAVEME 96 (103)
T ss_pred HHHHCCCCCHHH-----HHHHHHH
Confidence 888888 6665554
No 199
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.64 E-value=1.8e-05 Score=105.93 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=101.6
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..+..-+.++...|..|||-|..+..-++|...|..+|+++-.|+-... +.-.++|.+= +..-.|-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A----G~~GaVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA----GQPGTVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc----CCCCcEEEecc
Confidence 346888888888899999999999999999999999999999999988877643 2223455442 22234899999
Q ss_pred ccccccCCC--------cCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1405 AAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1405 AGGeGLNLq--------aADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
-+|+|-|+. .-=+||.-..+-|...+.|..||++|-|.......| +++|+.+.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~--lSLEDdLm 745 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY--VSLEDNLM 745 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE--EEcccHHH
Confidence 999999987 345889999999999999999999999988765544 23454444
No 200
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.64 E-value=6.3e-06 Score=109.05 Aligned_cols=105 Identities=21% Similarity=0.238 Sum_probs=79.6
Q ss_pred HhcCCeEEEEEccHHHHHHHHHHHHHcCC-eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCc--Cc
Q 000101 1340 QRTGHRVLLFSTMTKLLDILEEYLQWRQL-VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--AD 1416 (2239)
Q Consensus 1340 katGhKVLIFSQ~t~~LDILed~L~~rGi-ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqa--AD 1416 (2239)
...+.++|||+..-.+|..+.++|..... ..+...|... +..+++.|...... .||+.+....+|||++. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 44566999999999999999999987765 3455666654 44899999874432 68999999999999996 68
Q ss_pred eEEEcCCCCC-cch-----------------------------HHHhhhhhcccCCcceEEEE
Q 000101 1417 TVIIYDPDPN-PKN-----------------------------EEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1417 tVIifDppWN-P~~-----------------------------dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
.|||.-.|+= |.. ..|++||+.|--..+-|.|+
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivl 613 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVL 613 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEE
Confidence 8999988874 322 45889999985555555554
No 201
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.64 E-value=2.1e-09 Score=112.55 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=71.6
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+.+.+.... +++||+++++| .+|++..+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 10 il~~l~~~~-----~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 10 LYDTIRNYK-----SEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLK-IQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHhhc-----ccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHH-HHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 556677777 66899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~ 1799 (2239)
+||.++ .++..|+
T Consensus 84 N~~~s~~~-----~~A~~L~ 98 (113)
T cd05524 84 YKPDSPEH-----KDACKLW 98 (113)
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 899998 8887777
No 202
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.60 E-value=4.9e-05 Score=101.03 Aligned_cols=372 Identities=16% Similarity=0.206 Sum_probs=187.6
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH----HHHHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL----VNWKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL----sQW~~Ef~Kwa 1073 (2239)
|...++-|+.|.--| +.|.|.-.-||-|||+++ ++.+++....+ ..+-||+++.-| ..|...|.+|+
T Consensus 83 G~r~ydVQliGgl~L------h~G~IAEM~TGEGKTL~a-tlpaylnAL~G--kgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 83 GMRHFDVQLIGGMVL------HEGQIAEMKTGEGKTLVA-TLPSYLNALTG--KGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCCcchhHHHhhhhh------cCCceeeecCCCChhHHH-HHHHHHHhhcC--CCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 334445588876544 346688899999999976 44455543222 357777777744 34999999998
Q ss_pred CCCceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHH-----Hhh----hhcccCCceEEEecccccccChhhHHHH
Q 000101 1074 PSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIM-----YDR----SKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1074 Pslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~-----kD~----s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
++.|-+..+. ...|+ .....+|+.+|-..|- ... .......+.++||||++.+.
T Consensus 154 -GLtvg~i~~~~~~~err------~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL-------- 218 (939)
T PRK12902 154 -GLSVGLIQQDMSPEERK------KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL-------- 218 (939)
T ss_pred -CCeEEEECCCCChHHHH------HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee--------
Confidence 4555444332 22332 2346789888876653 221 11233578999999999874
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhh----cCCcccCCCCCC---CChhhHHHHHH---
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF----SQPFQKEGPTHN---ADDDWLETEKK--- 1212 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F----~kPf~~~g~~~~---~e~d~l~~ee~--- 1212 (2239)
+.. +..-|++||.+- ...++|...+-+... +.+|. ...+........ .+......+..
T Consensus 219 -IDE--ArTPLIISg~~~--~~~~~y~~~~~~~~~-------L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i 286 (939)
T PRK12902 219 -IDE--ARTPLIISGQVE--RPQEKYQKAAEVAAA-------LQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGV 286 (939)
T ss_pred -ecc--CCCcccccCCCc--cchHHHHHHHHHHHH-------hhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCc
Confidence 121 122367787653 223454433322110 00000 000000000000 00000000000
Q ss_pred -------HHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHHh
Q 000101 1213 -------VIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR 1277 (2239)
Q Consensus 1213 -------~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek~ 1277 (2239)
....+.+...|+.. ++.+-+.-+.. +....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 287 ~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~---dg~V~IVD-e~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tl 362 (939)
T PRK12902 287 SDLFDPQDPWAHYIFNALKAKELFIKDVNYIVR---NGEVVIVD-EFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTL 362 (939)
T ss_pred hhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEE---CCEEEEEE-CCCCCCCCCCccchHHHHHHHhhcCCCCCCCceee
Confidence 01122233333332 22232222221 11111111 122 2344455555444333322211000
Q ss_pred ------hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hhh-HhhcccHHHHHHHHHHHHHhcCCeE
Q 000101 1278 ------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDF-LVKSCGKLWILDRILIKLQRTGHRV 1346 (2239)
Q Consensus 1278 ------~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s----~d~-Li~~SGKLelLdrIL~kLkatGhKV 1346 (2239)
...+......+........-..|+++-+.+.+..|...... .+. ......|+..+..-+.++.+.|..|
T Consensus 363 AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPV 442 (939)
T PRK12902 363 ASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPV 442 (939)
T ss_pred eeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCE
Confidence 00000000000000111122456676666555444322111 111 2223568888888888888999999
Q ss_pred EEEEccHHHHHHHHHHHHHcCCeEEeecCC-CCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCC
Q 000101 1347 LLFSTMTKLLDILEEYLQWRQLVYRRIDGT-TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 1413 (2239)
Q Consensus 1347 LIFSQ~t~~LDILed~L~~rGiky~RLDGs-ts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLq 1413 (2239)
||-|..+...+.|...|...|+++..|+-. ...+.-..+|.+= +..-.|-|+|..+|+|-|+.
T Consensus 443 LIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A----G~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 443 LVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA----GRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred EEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc----CCCCcEEEeccCCCCCcCEe
Confidence 999999999999999999999999999886 3434445566552 22334889999999996644
No 203
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.56 E-value=8.6e-07 Score=106.08 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=104.2
Q ss_pred ccCCCChHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe-chHHHHHHHHH
Q 000101 996 LRAGTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV-PNAVLVNWKSE 1068 (2239)
Q Consensus 996 L~ggtLRPYQleGLqwLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV-P~SLLsQW~~E 1068 (2239)
+..|.|-.-|+++|-+...... .+.+.+|.|.+|.||.-++.++|.+.+. .++ .+.|.|. ...|...-.+.
T Consensus 33 ~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l-~Gr-~r~vwvS~s~dL~~Da~RD 110 (303)
T PF13872_consen 33 IDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL-RGR-KRAVWVSVSNDLKYDAERD 110 (303)
T ss_pred HhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH-cCC-CceEEEECChhhhhHHHHH
Confidence 3457899999999999987665 3455699999999999999999988764 344 3456555 45577777777
Q ss_pred HHHHCCC-CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh-------hhcc-------cCCceEEEecccccc
Q 000101 1069 LHKWLPS-VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR-------SKLS-------KVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1069 f~KwaPs-lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~-------s~L~-------kikWd~VIIDEAHrI 1133 (2239)
+...... +.+.....-+.. .....+..||++||..|+... ..|. ...-.+||+||||++
T Consensus 111 l~DIG~~~i~v~~l~~~~~~------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 111 LRDIGADNIPVHPLNKFKYG------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHHhCCCcccceechhhccC------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 7765322 222111111000 012236689999999998662 1222 112358999999999
Q ss_pred cChhh------HHHHHhh----ccccceEEEecCCCCC
Q 000101 1134 KDRES------VLARDLD----RYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1134 KN~~S------KlskaLk----~Lka~rRLLLTGTPIQ 1161 (2239)
||..+ +...++. .++..+.+..|||...
T Consensus 185 kn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas 222 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS 222 (303)
T ss_pred CCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC
Confidence 99654 4444443 3455678889999864
No 204
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.56 E-value=1.1e-05 Score=105.40 Aligned_cols=161 Identities=16% Similarity=0.171 Sum_probs=100.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH-H-CCCCc
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK-W-LPSVS 1077 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~K-w-aPslk 1077 (2239)
--.+|.+-+.-+ ..+...+|...|-.|||....-.+...++ ....+-++.|+|+. ++.|-..++.- | ++.+.
T Consensus 512 Pd~WQ~elLDsv----Dr~eSavIVAPTSaGKTfisfY~iEKVLR-esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 512 PDEWQRELLDSV----DRNESAVIVAPTSAGKTFISFYAIEKVLR-ESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CcHHHHHHhhhh----hcccceEEEeeccCCceeccHHHHHHHHh-hcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 345787766433 34667788889999999888777776665 44567888899976 66665555443 3 23322
Q ss_pred eEE-EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cc--cCCceEEEecccccccChh-hHHHHHhhccccc
Q 000101 1078 CIY-YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LS--KVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQ 1150 (2239)
Q Consensus 1078 vvv-y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~--kikWd~VIIDEAHrIKN~~-SKlskaLk~Lka~ 1150 (2239)
..+ ..|.- .+. +. +.....+|+||-++.+-...-. -. --+..|||+||.|.+.|.. ..++..+-.+-.-
T Consensus 587 rg~sl~g~l-tqE--Ys-inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~C 662 (1330)
T KOG0949|consen 587 RGVSLLGDL-TQE--YS-INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPC 662 (1330)
T ss_pred cchhhHhhh-hHH--hc-CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCC
Confidence 221 12211 110 00 1223568999999887543211 01 1156899999999998744 4555555544333
Q ss_pred eEEEecCCCCCCCHHHHHHHHh
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLN 1172 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLn 1172 (2239)
-.|+|||| .+++..+.-.++
T Consensus 663 P~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 663 PFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred CeeEEecc--cCCHHHHHHHHH
Confidence 46889999 677777777777
No 205
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.54 E-value=8.7e-09 Score=106.47 Aligned_cols=78 Identities=15% Similarity=0.061 Sum_probs=68.3
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
..+.|.+.. +++|++++.+| .+|++..+||||.+|++||||++ |..+|..|+|.++.++..|+.+
T Consensus 9 i~~~v~~~~-----d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 9 ILKGLRKER-----DENGRLLTLHFEKLPDKAREPEYYQEISNPISLDD-IKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHh-----CcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344566666 56899999999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccccCCccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ .++..|+
T Consensus 83 n~~~s~i~-----~~A~~l~ 97 (104)
T cd05522 83 NENDSQEY-----KDAVLLE 97 (104)
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 888888 6655543
No 206
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.52 E-value=8.6e-09 Score=106.93 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=69.4
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+.+.+.+.. +.+|++++++| .+|+++.|||||.+|++||||++ |..+|+. |.++.++..|+.+
T Consensus 9 l~~~i~~~~-----~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~t-I~~kl~~--Y~s~~ef~~D~~li~~Na~~y 80 (106)
T cd05521 9 LYDGIYTLK-----EENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNT-VKKRLPH--YTNAQEFVNDLAQIPWNARLY 80 (106)
T ss_pred HHHHHHhhc-----CcCCCCchHhhhcCCccccCccHHHHhcCCCCHHH-HHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 666788887 66799999999 99999999999999999999999 9999998 9999999999999
Q ss_pred --CCCccccCCccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~ 1799 (2239)
+||+++ .++..|.
T Consensus 81 N~~~s~i~-----~~A~~le 95 (106)
T cd05521 81 NTKGSVIY-----KYALILE 95 (106)
T ss_pred cCCCCHHH-----HHHHHHH
Confidence 999999 7776665
No 207
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.45 E-value=1.4e-05 Score=106.84 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=76.8
Q ss_pred CCeEEEEEccHHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE
Q 000101 1343 GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1343 GhKVLIFSQ~t~~LDILed~L~~----rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
..-+|||-.-...++.+.+.|.. ..+.++-|+|.++.++..++ |+......+-|+++|.++.++|.+..+.+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45689998888888877777776 45778999999999887774 554333435589999999999999999988
Q ss_pred E--------EcCCCC----------CcchHHHhhhhhcccCCcceEEEEEEehh
Q 000101 1419 I--------IYDPDP----------NPKNEEQAVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1419 I--------ifDppW----------NP~~dlQAiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
| .||+-- +-+...||-|||+|.+ +-.+|+|.+-
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse 386 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSE 386 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCH
Confidence 7 344332 2234557777777754 5567777663
No 208
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.44 E-value=2.9e-06 Score=113.60 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=52.4
Q ss_pred CccEEEEehhHHHHhh--hhcccCCceEEEecccccccChhhHHHHHhhcc----ccceEEEecCCCCCC--CHHHHHHH
Q 000101 1099 KFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGTPLQN--DLKELWSL 1170 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L----ka~rRLLLTGTPIQN--nL~ELwsL 1170 (2239)
.-.|++.|...+..|. ..+.-..+..|||||||++.. ++.-.-++..| +..+..++|+.|-.. ....|-.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~-~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIE-SSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccc-cccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 4579999999998884 345555789999999999964 33333334444 345689999999763 34455555
Q ss_pred HhhhcCc
Q 000101 1171 LNLLLPE 1177 (2239)
Q Consensus 1171 LnFLlP~ 1177 (2239)
+.-|.-.
T Consensus 86 mk~L~i~ 92 (814)
T TIGR00596 86 MRNLFLR 92 (814)
T ss_pred HHHhCcC
Confidence 5555333
No 209
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.43 E-value=2e-06 Score=109.60 Aligned_cols=241 Identities=16% Similarity=0.244 Sum_probs=128.2
Q ss_pred CCccccCCCChHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHH
Q 000101 992 QPSMLRAGTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVN 1064 (2239)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP-~SLLsQ 1064 (2239)
.|++ ..|-|-.-|+++|-|.+.... ..-|-||.|.-|.||-.++..+|...+- ++. ++.|.+.- ..|-..
T Consensus 257 lP~i-~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL-kGR-KrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 257 LPSI-DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL-KGR-KRALWFSVSSDLKFD 333 (1300)
T ss_pred cccC-cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh-ccc-ceeEEEEeccccccc
Confidence 5663 345899999999999987654 2344589999999886665555544332 333 45666654 446555
Q ss_pred HHHHHHHHC-CCCceEEEecchhhHHHHH-HHHhhcCccEEEEehhHHHHhh--------hhccc-CCc------eEEEe
Q 000101 1065 WKSELHKWL-PSVSCIYYVGAKDQRSRLF-SQVAALKFNVLVTTYEFIMYDR--------SKLSK-VDW------KYIII 1127 (2239)
Q Consensus 1065 W~~Ef~Kwa-Pslkvvvy~Gskd~Rk~l~-~~i~~~kfdVVITTYE~L~kD~--------s~L~k-ikW------d~VII 1127 (2239)
-.+.+.... +.+.|..+.--+-. .+- ......+-.|+++||..|+-+- ..|.. ..| .+||+
T Consensus 334 AERDL~DigA~~I~V~alnK~KYa--kIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 334 AERDLRDIGATGIAVHALNKFKYA--KISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred hhhchhhcCCCCccceehhhcccc--cccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 666666553 33322221100000 000 0011234469999999987541 11111 123 68999
Q ss_pred cccccccC-------hhhHHHHHhh----ccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHH---HHhhhcCCc
Q 000101 1128 DEAQRMKD-------RESVLARDLD----RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA---FHDWFSQPF 1193 (2239)
Q Consensus 1128 DEAHrIKN-------~~SKlskaLk----~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~---F~e~F~kPf 1193 (2239)
||||+.|| ..++.-+++. .++..+.+..|||-.. |--++.....-++++.... |.+++ ..+
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~eF~eFi-~Av 486 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFPEFEEFI-HAV 486 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCccHHHHH-HHH
Confidence 99999998 2334444444 3466677888888432 2233444445555544333 33322 223
Q ss_pred ccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHH
Q 000101 1194 QKEGPTHNADDDWLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW 1261 (2239)
Q Consensus 1194 ~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~ 1261 (2239)
.+.|...- + |-.+...++-. +-|.+ .+-.-...+-.++|+.+-+++|+.
T Consensus 487 EkRGvGAM-E------------IVAMDMK~rGmYiARQL------SFkgVsFrieEv~ls~eF~k~Yn~ 536 (1300)
T KOG1513|consen 487 EKRGVGAM-E------------IVAMDMKLRGMYIARQL------SFKGVSFRIEEVPLSKEFRKVYNR 536 (1300)
T ss_pred HhcCCcee-e------------eeehhhhhhhhhhhhhc------cccCceEEEEecccCHHHHHHHHH
Confidence 33332211 1 01111122222 22211 123345567789999999999974
No 210
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.43 E-value=1.8e-06 Score=110.11 Aligned_cols=152 Identities=24% Similarity=0.296 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQ-W~~Ef~KwaPslk 1077 (2239)
.+|-|+|..++.-+ .++...++..-|-.|||+.|-..|+.-+..+ .+++...|-..|+| =.+||..-+.++.
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 48999999988544 4578889989999999998876666554322 35677779765554 5567766555433
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----hhcccCCceEEEecccccccChhh--HHHHHhhcccc-c
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQRMKDRES--VLARDLDRYRC-Q 1150 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s~L~kikWd~VIIDEAHrIKN~~S--KlskaLk~Lka-~ 1150 (2239)
. ..|... .......+|+|-+.|+.-. ..+..+.| ||+||.|.|++... -+-.++.-++. -
T Consensus 201 L--MTGDVT---------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 201 L--MTGDVT---------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred e--eeccee---------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEeccccc
Confidence 2 233321 1235678899999887542 34444455 99999999976433 22233334443 3
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhc
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS 1190 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~ 1190 (2239)
+-++|||| ..+...|.+|+.
T Consensus 268 r~VFLSAT--------------------iPNA~qFAeWI~ 287 (1041)
T KOG0948|consen 268 RFVFLSAT--------------------IPNARQFAEWIC 287 (1041)
T ss_pred eEEEEecc--------------------CCCHHHHHHHHH
Confidence 56889999 234578888875
No 211
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.42 E-value=8.1e-05 Score=99.51 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHHhcC-CCCccEEEEecccc
Q 000101 1329 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSH-DSDCFIFLLSIRAA 1406 (2239)
Q Consensus 1329 LelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Giky~RLDGsts~eeRqeiL~~FNs~-ds~~~VfLLSTrAG 1406 (2239)
...+.+.|..+...+.++|||+..-.+++.+...|... ++. +.+.|. ..|.++++.|.+. +..-..+|+.+...
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 33455555555556667899998888899888888643 333 334554 3578899888642 00112378888999
Q ss_pred ccccCCCc--CceEEEcCCCC
Q 000101 1407 GRGLNLQS--ADTVIIYDPDP 1425 (2239)
Q Consensus 1407 GeGLNLqa--ADtVIifDppW 1425 (2239)
.+|||++. +..|||.-.|+
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccccCCCCceEEEEEEcCCC
Confidence 99999985 78999988776
No 212
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.37 E-value=2.2e-05 Score=104.91 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEEEccHHHHHHHHHHHHH----c---CCeEEeecCCCCHHHHHHHHHHHhcCCCCccE
Q 000101 1328 KLWILDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQW----R---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 1398 (2239)
Q Consensus 1328 KLelLdrIL~kLkat--GhKVLIFSQ~t~~LDILed~L~~----r---Giky~RLDGsts~eeRqeiL~~FNs~ds~~~V 1398 (2239)
.+.++..++..+.+. ...+|||-.....+..+.+.|.. . .+-++.+|+.++..+.+.+ |+.+-.+++-
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 445555555555433 45799998777777776666653 2 3567889999998776654 5665566777
Q ss_pred EEEeccccccccCCCcCceEE--------EcCCCC----------CcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1399 FLLSIRAAGRGLNLQSADTVI--------IYDPDP----------NPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1399 fLLSTrAGGeGLNLqaADtVI--------ifDppW----------NP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+|++|..+...|.+.++-+|| .||+-- +-++-.||.|||+|.- +-.+|++.+
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~---~G~cy~L~~ 542 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR---PGICYHLYT 542 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc---CCeeEEeec
Confidence 999999999999999877775 455433 3445679999988853 335566544
No 213
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.37 E-value=2.3e-05 Score=103.11 Aligned_cols=112 Identities=17% Similarity=0.262 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccc
Q 000101 1329 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1408 (2239)
Q Consensus 1329 LelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGe 1408 (2239)
...+..|+..+ ..|++|.|||......+++++++...+.+++.++|..+..+. +.|. ++.| |+=|.+...
T Consensus 269 ~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W~----~~~V-viYT~~itv 338 (824)
T PF02399_consen 269 TTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESWK----KYDV-VIYTPVITV 338 (824)
T ss_pred hhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cccc----ceeE-EEEeceEEE
Confidence 33444444444 479999999999999999999999999999999998776632 3343 4555 555578889
Q ss_pred ccCCCc--CceEEEc--CCCCCcch--HHHhhhhhcccCCcceEEEEEE
Q 000101 1409 GLNLQS--ADTVIIY--DPDPNPKN--EEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1409 GLNLqa--ADtVIif--DppWNP~~--dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
||++-. .|.|+.| .....|.+ ..|.+||+-.+. ++++.||.-
T Consensus 339 G~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 339 GLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred EeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 999875 4666666 33344554 699999998887 567777654
No 214
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.28 E-value=0.00012 Score=94.20 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=74.1
Q ss_pred eEEEEEccHHHHHHHHHHHHHc----CC----eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCc
Q 000101 1345 RVLLFSTMTKLLDILEEYLQWR----QL----VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1416 (2239)
Q Consensus 1345 KVLIFSQ~t~~LDILed~L~~r----Gi----ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaAD 1416 (2239)
-+|||=...+..+.+.+.|... +- .++-++|+++.++..++ |.....+++-+++||..+...|.+..+-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 5888877777666666666543 21 25679999998886554 5544446778999999999999999988
Q ss_pred eEE--------EcCCCC-------CcchHHHhhhhhcccCCcceEEEEEEehh
Q 000101 1417 TVI--------IYDPDP-------NPKNEEQAVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1417 tVI--------ifDppW-------NP~~dlQAiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
+|| .|++-- -|..-.||.-|++|.|.+.+..+|||.+.
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte 389 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTE 389 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeH
Confidence 876 333321 11234456666666666778888998774
No 215
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.27 E-value=8.6e-06 Score=109.45 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=106.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-HHHHH---------HHHHCCC--CceEEEecch--
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-NWKSE---------LHKWLPS--VSCIYYVGAK-- 1085 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs-QW~~E---------f~KwaPs--lkvvvy~Gsk-- 1085 (2239)
++..+.++||+|||.+++.+|.+|.... .+..+|||||...+. -...- |...+.+ +...+|....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~-~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY-GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 4668899999999999999999987643 457899999976332 22221 2222333 3344454332
Q ss_pred -hhHHHHH---HHHhh------cCccEEEEehhHHHHhhh--h----c--cc--CCc-------eEEEecccccccChhh
Q 000101 1086 -DQRSRLF---SQVAA------LKFNVLVTTYEFIMYDRS--K----L--SK--VDW-------KYIIIDEAQRMKDRES 1138 (2239)
Q Consensus 1086 -d~Rk~l~---~~i~~------~kfdVVITTYE~L~kD~s--~----L--~k--ikW-------d~VIIDEAHrIKN~~S 1138 (2239)
..|..+. ..+.. ...+|+|+|.+.|.++.. . + .. ..| -+|||||.|++.. ..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~ 217 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DN 217 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-ch
Confidence 1111111 11221 257899999998876421 0 0 11 122 4799999999954 34
Q ss_pred HHHHHhhccccceEEEecCCCCC-------C--CHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCC
Q 000101 1139 VLARDLDRYRCQRRLLLTGTPLQ-------N--DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEG 1197 (2239)
Q Consensus 1139 KlskaLk~Lka~rRLLLTGTPIQ-------N--nL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g 1197 (2239)
+.+.+|..++..+.|..|||--. | .-.++++|+-- ++..++|...+.+-+...+
T Consensus 218 k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~-----LdavdAyn~~LVK~I~V~~ 280 (986)
T PRK15483 218 KFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFD-----LNAVDSFNDGLVKGVDIFY 280 (986)
T ss_pred HHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceee-----cCHHHHHHhCCcceEEEee
Confidence 56788899999999999999532 0 11234444443 3567889888877766543
No 216
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.25 E-value=4.5e-05 Score=100.61 Aligned_cols=154 Identities=19% Similarity=0.118 Sum_probs=92.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQ-W~~Ef~KwaP--sl 1076 (2239)
.|+++|.+++.-=. ...+.|.|.+..++-|||+.+=.+++...-. ..+.+|+|.|--.+.+ =..++..+.- ++
T Consensus 223 ~~fewq~ecls~~~--~~e~~nliys~Pts~gktlvaeilml~~~l~--~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~ 298 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPR--LLERKNLIYSLPTSAGKTLVAEILMLREVLC--RRRNVLLILPYVSIVQEKISALSPFSIDLGF 298 (1008)
T ss_pred HHHHHHHHHhcchh--hhcccceEEeCCCccchHHHHHHHHHHHHHH--HhhceeEecceeehhHHHHhhhhhhccccCC
Confidence 57888888874322 2367788999999999998886665543221 2235688888654444 2333444442 44
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhccc----CCceEEEecccccccC--hhhHHHHHhhcc---
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSK----VDWKYIIIDEAQRMKD--RESVLARDLDRY--- 1147 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~k----ikWd~VIIDEAHrIKN--~~SKlskaLk~L--- 1147 (2239)
.+-.|.|...-- .....-.|.|+|-+.-..+...|-. ....+|||||-|-+.. .+..+-..|..+
T Consensus 299 ~ve~y~g~~~p~------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 299 PVEEYAGRFPPE------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred cchhhcccCCCC------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 555566542211 1123457999999887766544432 2467899999999843 333333333322
Q ss_pred -ccc--eEEEecCCCCCCC
Q 000101 1148 -RCQ--RRLLLTGTPLQND 1163 (2239)
Q Consensus 1148 -ka~--rRLLLTGTPIQNn 1163 (2239)
... ..+++|||-.+|.
T Consensus 373 ~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 373 NLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred ccccceeEeeeecccCChH
Confidence 222 3799999964443
No 217
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.22 E-value=1.3e-05 Score=100.30 Aligned_cols=98 Identities=27% Similarity=0.338 Sum_probs=76.5
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCe-EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1420 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGik-y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi 1420 (2239)
.|.=|+-||... +-.+...+..+|.. +++|.|+.+++.|..--..||+++.+|.| |++++|.|.|||| ++++|||
T Consensus 357 ~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL-~IrRiiF 432 (700)
T KOG0953|consen 357 PGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNL-NIRRIIF 432 (700)
T ss_pred CCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeeccccccccc-ceeEEEE
Confidence 466667776532 22233444555554 89999999999999999999998888775 7888999999998 5899999
Q ss_pred cCCC---------CCcchHHHhhhhhcccCCc
Q 000101 1421 YDPD---------PNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1421 fDpp---------WNP~~dlQAiGRAhRIGQk 1443 (2239)
++.- -...+..|--|||+|.|.+
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccC
Confidence 9876 3455678999999999876
No 218
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.16 E-value=1.4e-06 Score=91.43 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=39.0
Q ss_pred CccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q 000101 1983 NILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFS 2023 (2239)
Q Consensus 1983 ~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~ 2023 (2239)
-||||.+|++||.++.|.+.++|++|+.|||+||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 37999999999999999999999999999999999999774
No 219
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.12 E-value=0.0026 Score=81.74 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=66.0
Q ss_pred eEEEEEccHHHHHHHHHHHH----Hc-----CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcC
Q 000101 1345 RVLLFSTMTKLLDILEEYLQ----WR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 1415 (2239)
Q Consensus 1345 KVLIFSQ~t~~LDILed~L~----~r-----Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA 1415 (2239)
-+|||-.-.+.+....+.|. .. .+-++-|+.+.+.+...++ |...-.+++-++|+|..+.+.|.+.++
T Consensus 475 DILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI 551 (902)
T KOG0923|consen 475 DILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGI 551 (902)
T ss_pred cEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCe
Confidence 46666555444443333332 22 3457788999998776655 433233466789999999999999988
Q ss_pred ceEEEcCCCC--------------------CcchHHHhhhhhcccCCcceEEEEE
Q 000101 1416 DTVIIYDPDP--------------------NPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1416 DtVIifDppW--------------------NP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
..|| ||-+ +-+.-.||-|||+|.|-.|..++|.
T Consensus 552 ~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt 604 (902)
T KOG0923|consen 552 KYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYT 604 (902)
T ss_pred EEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeec
Confidence 8886 4433 2345679999999988666555543
No 220
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.10 E-value=1.6e-05 Score=86.86 Aligned_cols=126 Identities=21% Similarity=0.189 Sum_probs=70.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCc
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKF 1100 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kf 1100 (2239)
-.+|-.-.|.|||-.++--+. .+.-...+++||+.|+.++. +|+.+.+.+..+ .+.-....+ ...++.
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~--~~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~-~~~t~~~~~------~~~g~~ 73 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIV--REAIKRRLRVLVLAPTRVVA---EEMYEALKGLPV-RFHTNARMR------THFGSS 73 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHH--HHHHHTT--EEEEESSHHHH---HHHHHHTTTSSE-EEESTTSS----------SSS
T ss_pred eeEEecCCCCCCcccccHHHH--HHHHHccCeEEEecccHHHH---HHHHHHHhcCCc-ccCceeeec------cccCCC
Confidence 346777899999987655332 22233456899999999763 455555555542 222221111 123466
Q ss_pred cEEEEehhHHHHhh-hhcccCCceEEEecccccccChhhHHHHH-hhccc-c--ceEEEecCCC
Q 000101 1101 NVLVTTYEFIMYDR-SKLSKVDWKYIIIDEAQRMKDRESVLARD-LDRYR-C--QRRLLLTGTP 1159 (2239)
Q Consensus 1101 dVVITTYE~L~kD~-s~L~kikWd~VIIDEAHrIKN~~SKlska-Lk~Lk-a--~rRLLLTGTP 1159 (2239)
.|-|+||.++.... ......+|++||+||||-. ++.+-..+- |..+. . ...+++||||
T Consensus 74 ~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 74 IIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp SEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred cccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 78899999886542 3344568999999999985 444443332 22331 1 2578899999
No 221
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.10 E-value=4.4e-05 Score=99.59 Aligned_cols=167 Identities=18% Similarity=0.145 Sum_probs=104.5
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH--------HHHHH-HHHCCCCceEEEecch
Q 000101 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN--------WKSEL-HKWLPSVSCIYYVGAK 1085 (2239)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQ--------W~~Ef-~KwaPslkvvvy~Gsk 1085 (2239)
++...+|+=+-+|||+|||.+.+-+|..|....+ .-.|+||||+-.+.- -.+.| ..++.+...-.|.-..
T Consensus 70 ~~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG-~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~ 148 (985)
T COG3587 70 RIDDKLNIDILMETGTGKTYTYLRTMFELHKKYG-LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE 148 (985)
T ss_pred cCCCcceeeEEEecCCCceeeHHHHHHHHHHHhC-ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech
Confidence 4455677777899999999999999988876554 358999999764321 12233 4444443333333322
Q ss_pred hhHHHHHHHHhhcCccEEEEehhHHHHh---hhh---------------------cccCCceEEEecccccccChhhHHH
Q 000101 1086 DQRSRLFSQVAALKFNVLVTTYEFIMYD---RSK---------------------LSKVDWKYIIIDEAQRMKDRESVLA 1141 (2239)
Q Consensus 1086 d~Rk~l~~~i~~~kfdVVITTYE~L~kD---~s~---------------------L~kikWd~VIIDEAHrIKN~~SKls 1141 (2239)
..-.. .-.......|+|.+...+.++ ... |...+ -+|||||-|++... .+.+
T Consensus 149 ~~~~~--~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~r-PIvIvDEPh~f~~~-~k~~ 224 (985)
T COG3587 149 DIEKF--KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMR-PIVIVDEPHRFLGD-DKTY 224 (985)
T ss_pred HHHHH--hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcC-CEEEecChhhcccc-hHHH
Confidence 11111 113345677888888887665 111 11111 37999999999865 7888
Q ss_pred HHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCccc
Q 000101 1142 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQK 1195 (2239)
Q Consensus 1142 kaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~ 1195 (2239)
.++..+.....|=.+||= .+-|.=+- -.+++.+.|...+.+.+..
T Consensus 225 ~~i~~l~pl~ilRfgATf-----kd~y~~l~----yrLDsi~Af~~~LVK~I~v 269 (985)
T COG3587 225 GAIKQLNPLLILRFGATF-----KDEYNNLV----YRLDSIDAFNQKLVKQIRV 269 (985)
T ss_pred HHHHhhCceEEEEecccc-----hhhhcCee----EEeeHHhhhhhhhhhheee
Confidence 999999998888888882 33333111 1235667777776655543
No 222
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.07 E-value=0.0012 Score=89.70 Aligned_cols=161 Identities=17% Similarity=0.124 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHHhhc----CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC--------------------------
Q 000101 1001 LRDYQIVGLQWMLSLYN----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNY-------------------------- 1050 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~----n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~-------------------------- 1050 (2239)
=+-+|-++++.+..+.. .+.-|+--..||+|||+.=.-++..|......+
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 35689999998887664 344466678899999998877776655322211
Q ss_pred -CCeEEEechHHH----HHHHHHH-----------HHHCCCCc---eEEEecchhhHHH---HH---HHHhhcCccEEEE
Q 000101 1051 -GPHLIIVPNAVL----VNWKSEL-----------HKWLPSVS---CIYYVGAKDQRSR---LF---SQVAALKFNVLVT 1105 (2239)
Q Consensus 1051 -GP~LIVVP~SLL----sQW~~Ef-----------~KwaPslk---vvvy~Gskd~Rk~---l~---~~i~~~kfdVVIT 1105 (2239)
.-.-|++=.+.+ ..+.... ..|+..-. .+.|.|.-++-.- +. .....-...|+|+
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 112344433222 2233321 11222222 4556664322110 00 0012224579999
Q ss_pred ehhHHHHhhhhc---------ccCCceEEEecccccccChhh-HHHHHhh--ccccceEEEecCCCCC
Q 000101 1106 TYEFIMYDRSKL---------SKVDWKYIIIDEAQRMKDRES-VLARDLD--RYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1106 TYE~L~kD~s~L---------~kikWd~VIIDEAHrIKN~~S-KlskaLk--~Lka~rRLLLTGTPIQ 1161 (2239)
|.+.++.....+ ...--..|||||.|-+-.... .+.+.|. .....+.++||||--.
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPP 636 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 998887553211 123346899999998843322 2333333 2345678999999533
No 223
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.98 E-value=0.00026 Score=90.35 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=56.5
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCC----CCCcc-----------hHH
Q 000101 1367 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP----DPNPK-----------NEE 1431 (2239)
Q Consensus 1367 Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDp----pWNP~-----------~dl 1431 (2239)
++.++-|...++.+-..++ |.....+.+-+|++|.++.+.|.++.+.+||=... -+||. .-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 5677778888887665544 55555677788999999999999999988873221 12332 223
Q ss_pred HhhhhhcccCCcceEEEEEEeh
Q 000101 1432 QAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1432 QAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+|--|++|.|.+.+-..|++.+
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYT 695 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYT 695 (1042)
T ss_pred cchhhccccCCCCCcceeeehh
Confidence 3444555555566777888876
No 224
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.97 E-value=0.00012 Score=96.99 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=86.2
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCccEEEE
Q 000101 1029 GLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVT 1105 (2239)
Q Consensus 1029 GLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVIT 1105 (2239)
|+|||-..+.++...+.. .+.+||++|.. +..|+...|...++...+.+|+.. ..+|.+.+..+..+...|||.
T Consensus 170 GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999887752 34699999965 889999999999986677788775 444555555677788899999
Q ss_pred ehhHHHHhhhhcccCCceEEEecccccc--cChhhHH--HHHhhc----cccceEEEecCCC
Q 000101 1106 TYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRESVL--ARDLDR----YRCQRRLLLTGTP 1159 (2239)
Q Consensus 1106 TYE~L~kD~s~L~kikWd~VIIDEAHrI--KN~~SKl--skaLk~----Lka~rRLLLTGTP 1159 (2239)
|...+. +.--+..+|||||=|.- |...... .+.+.. +..-..|+-|+||
T Consensus 247 tRSAvF-----aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 247 TRSAVF-----APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred cceeEE-----eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 987653 22336789999998864 3322111 121222 2223356669999
No 225
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.94 E-value=1.2e-06 Score=90.26 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=53.7
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
+..+.+| ..++...+||||.+|++||||++ |.++|+.|+|.++.+...|+.+ ++|+++
T Consensus 17 ~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~ 85 (99)
T cd05508 17 QPGAEPFLKPVDLEQFPDYAQYVFKPMDLST-LEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLT 85 (99)
T ss_pred CcCcchhcCCCChhhCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4568889 88888999999999999999999 9999999999999999999999 788777
No 226
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.93 E-value=1.6e-06 Score=88.99 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=52.4
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
.+.+| .+|++..+||||.+|++||||+. |..+|+.|+|.++.+...|+.+ +||+|+
T Consensus 17 ~s~~F~~pv~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 83 (97)
T cd05505 17 FSWPFREPVTADEAEDYKKVITNPMDLQT-MQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVL 83 (97)
T ss_pred CcccccCCCChhhcccHHHHcCCcCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45688 88899999999999999999999 9999999999999999999999 888887
No 227
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.92 E-value=0.00011 Score=88.67 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~---~GP~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
+.||.|++-+..+...+.++.++|+-..||+|||+.++..+.......+. ..++++++++. ++.+-..++.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999999999989889999999999999999998877544332222 13677777765 455555556554
No 228
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.92 E-value=0.00011 Score=88.67 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~---~GP~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
+.||.|++-+..+...+.++.++|+-..||+|||+.++..+.......+. ..++++++++. ++.+-..++.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999999999989889999999999999999998877544332222 13677777765 455555556554
No 229
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.87 E-value=1.4e-06 Score=92.43 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=56.8
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C-CCccccCCcccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~-~Sw~~~~~~~~d~~~~ 1798 (2239)
.+.+| .+++...|||||.+|++||||++ |.++|+.|.|.++.++..|+.+ + ||+|+ .++..|
T Consensus 22 ~s~~F~~PVd~~~~pdY~~iIk~PmDL~t-Ik~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~s~i~-----~~a~~L 95 (119)
T cd05496 22 DSEPFRQPVDLLKYPDYRDIIDTPMDLGT-VKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKRSRIY-----SMTLRL 95 (119)
T ss_pred ccccccCCCChhhcCcHHHHhCCcccHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 46788 88898999999999999999999 9999999999999999999999 3 89998 776666
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 96 ~ 96 (119)
T cd05496 96 S 96 (119)
T ss_pred H
Confidence 5
No 230
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.85 E-value=1.8e-06 Score=90.08 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=56.8
Q ss_pred Cccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccc
Q 000101 1728 SRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGED 1794 (2239)
Q Consensus 1728 ~r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d 1794 (2239)
.+..+.+| .+++.. .+||||.+|++||||+. |..+|+.|+|.++.+...|+.+ +||+++ ..
T Consensus 19 ~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~ 92 (107)
T cd05497 19 KHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGT-IKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVV-----LM 92 (107)
T ss_pred hCCcCccccCCCCcccccCCcHHHHHcCcccHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HH
Confidence 35668889 666655 69999999999999999 9999999999999999999999 899988 66
Q ss_pred ccccc
Q 000101 1795 EQVLQ 1799 (2239)
Q Consensus 1795 ~~~~~ 1799 (2239)
+..|+
T Consensus 93 A~~l~ 97 (107)
T cd05497 93 AQTLE 97 (107)
T ss_pred HHHHH
Confidence 55554
No 231
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.83 E-value=0.00019 Score=81.26 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHH-----HhCCCCCeEEEechH-HHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLME-----FKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lie-----~k~~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
+|-+.|.+++..++. ... .++....|+|||-+...++..++. .....+++||++|+. .+.+....+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 477899999977765 444 788899999999888888877742 245667899999966 67777777777
No 232
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.83 E-value=2.9e-05 Score=94.11 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=65.2
Q ss_pred hccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHH
Q 000101 1953 IEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARK 2032 (2239)
Q Consensus 1953 ~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~ 2032 (2239)
+++.|+. -..|.-...|.|--+ |++|.|..|...++..++|.+ -+|..|+.||+-||++||+++.-.|+.|++
T Consensus 223 ~~p~~~l-----nyg~tas~aP~YSm~-Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank 295 (418)
T KOG1828|consen 223 VDPVAYL-----NYGPTASFAPGYSMT-ITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANK 295 (418)
T ss_pred cCchhhh-----cccchhhhccccccc-ccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHh
Confidence 3566653 334555567999555 999999999999999999999 999999999999999999999999999998
Q ss_pred HHH
Q 000101 2033 VHD 2035 (2239)
Q Consensus 2033 L~~ 2035 (2239)
+.-
T Consensus 296 ~lh 298 (418)
T KOG1828|consen 296 QLH 298 (418)
T ss_pred hhh
Confidence 765
No 233
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.79 E-value=2.8e-06 Score=87.28 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=53.3
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
+..+.+| ..+++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|.++
T Consensus 16 ~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~ 84 (98)
T cd05512 16 KDTAEIFSEPVDLSEVPDYLDHIKQPMDFST-MRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFY 84 (98)
T ss_pred CCCchhhcCCCCccccCCHHHHhcCCcCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4456778 88888999999999999999999 9999999999999999999999 888887
No 234
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.75 E-value=3.1e-06 Score=86.63 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=56.2
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+++...+|+||.+|++||||.. |..+|+.|+|.++.+...|+.+ ++|.++ .++..|
T Consensus 16 ~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~a~~l 89 (97)
T cd05503 16 EDAWPFLEPVNTKLVPGYRKIIKKPMDFST-IREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVG-----RAGHNM 89 (97)
T ss_pred CCchhhcCCCCccccCCHHHHhCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 355678 88888999999999999999999 9999999999999999999999 788877 666555
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 90 ~ 90 (97)
T cd05503 90 R 90 (97)
T ss_pred H
Confidence 4
No 235
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.74 E-value=3.8e-06 Score=87.08 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=52.4
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
...+.+| ..++...+|+||.+|++||||+. |.++|+.|+|.++.+...|+.+ ++|.++
T Consensus 18 ~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~ 86 (104)
T cd05507 18 HRYASVFLKPVTEDIAPGYHSVVYRPMDLST-IKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVY 86 (104)
T ss_pred CCCCHhhcCCCCccccCCHHHHhCCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4457788 88888999999999999999999 9999999999999999999998 667666
No 236
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.69 E-value=4.7e-06 Score=85.90 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=57.3
Q ss_pred Cccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccc
Q 000101 1728 SRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGED 1794 (2239)
Q Consensus 1728 ~r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d 1794 (2239)
.+.++.+| .+|+.. .+|+||.+|++||||+. |..+|+.|+|.++.+...|+.+ ++|.++ ..
T Consensus 17 ~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~-I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~~~s~~~-----~~ 90 (102)
T cd05499 17 HSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGT-ISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDVY-----MM 90 (102)
T ss_pred CCcccchhcCCCCccccCCCCHHHHhcCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HH
Confidence 35678899 776766 99999999999999999 9999999999999999999998 788777 55
Q ss_pred ccccc
Q 000101 1795 EQVLQ 1799 (2239)
Q Consensus 1795 ~~~~~ 1799 (2239)
+..|+
T Consensus 91 a~~l~ 95 (102)
T cd05499 91 GHQLE 95 (102)
T ss_pred HHHHH
Confidence 55544
No 237
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.68 E-value=5.7e-06 Score=85.09 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=51.8
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
..+.+| ..++...+|+||.+|++||||++ |..+|+.|+|.++.+..+|+.+ ++|+++
T Consensus 17 ~~~~~F~~PV~~~~~pdY~~vIk~PmDL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~ 84 (98)
T cd05513 17 DPHGFFAFPVTDFIAPGYSSIIKHPMDFST-MKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYY 84 (98)
T ss_pred CccccccCcCCccccccHHHHHcCccCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 346788 66678889999999999999999 9999999999999999999998 888887
No 238
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=97.66 E-value=6e-06 Score=86.81 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=55.8
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C----CCccccCCccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S----GSWTHDRDEGEDE 1795 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~----~Sw~~~~~~~~d~ 1795 (2239)
.+.+| ..|+...+||||.+|++||||+. |..+|+.|+|.++.+...|+.+ + ||||+ .++
T Consensus 20 ~~~~F~~pv~~~~~pdY~~vI~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s~i~-----~~A 93 (112)
T cd05528 20 RFNAFTKPVDEEEVPDYYEIIKQPMDLQT-ILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPADKLIR-----SRA 93 (112)
T ss_pred CchhhcCCCCccccCcHHHHHcCCCCHHH-HHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCccccHHH-----HHH
Confidence 34678 88999999999999999999999 9999999999999999999999 4 67888 666
Q ss_pred cccc
Q 000101 1796 QVLQ 1799 (2239)
Q Consensus 1796 ~~~~ 1799 (2239)
..|+
T Consensus 94 ~~L~ 97 (112)
T cd05528 94 CELR 97 (112)
T ss_pred HHHH
Confidence 6555
No 239
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.64 E-value=5.4e-06 Score=87.53 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=56.7
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
.+.+| .+|++..+|+||.+|++||||+. |..+|+.|+|.++.+...|+.+ ++|.++ ..+..|+
T Consensus 29 ~s~~F~~pvd~~~~pdY~~vI~~PmDL~t-I~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i~-----~~A~~l~ 102 (115)
T cd05504 29 DSWPFLRPVSKIEVPDYYDIIKKPMDLGT-IKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSVY-----KAGTRLQ 102 (115)
T ss_pred CchhhcCCCCccccccHHHHhcCcccHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 35678 89999999999999999999999 9999999999999999999998 888888 6666655
No 240
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.63 E-value=5.4e-06 Score=85.25 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=57.0
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
.+.+| .+|++..+|+||.+|++||||.. |..+|+.|+|.++.+...|+.+ ++|+++ ..+..|+
T Consensus 18 ~a~~F~~pv~~~~~p~Y~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~-----~~a~~l~ 91 (101)
T cd05509 18 SAWPFLEPVDKEEAPDYYDVIKKPMDLST-MEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYY-----KCANKLE 91 (101)
T ss_pred CchhhcCCCChhhcCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 56788 88999999999999999999999 9999999999999999999998 888888 6666655
No 241
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.0006 Score=88.47 Aligned_cols=111 Identities=22% Similarity=0.195 Sum_probs=67.2
Q ss_pred HHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH-HhCCCCC-eEEEe-chHHH--HH---HHHHHHHHCCCCceEE-E
Q 000101 1011 WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME-FKGNYGP-HLIIV-PNAVL--VN---WKSELHKWLPSVSCIY-Y 1081 (2239)
Q Consensus 1011 wLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie-~k~~~GP-~LIVV-P~SLL--sQ---W~~Ef~KwaPslkvvv-y 1081 (2239)
.++...+.+.-.|+|.|||+|||.|.=-|+...-- ......| ++=|+ |..+. .. -..|+..+-..+...+ |
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf 342 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF 342 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe
Confidence 34456667888999999999999997655532110 0000113 33344 76543 22 3334444333333333 4
Q ss_pred ecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh-hcccCCceEEEeccccc
Q 000101 1082 VGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS-KLSKVDWKYIIIDEAQR 1132 (2239)
Q Consensus 1082 ~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s-~L~kikWd~VIIDEAHr 1132 (2239)
.|+. .....|.++|-+.|+++.. -|.-.++..|||||||.
T Consensus 343 d~ti-----------~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 343 DGTI-----------GEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHE 383 (1172)
T ss_pred cccc-----------CCCceeEEecchHHHHHHHHhHhhhhceeEEechhhh
Confidence 4442 2356799999999998864 34445799999999996
No 242
>smart00297 BROMO bromo domain.
Probab=97.63 E-value=6.6e-06 Score=84.47 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=60.2
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+...+++.- ..++++.+| .+|++..+|+||.+|++||||.. |..+|+.|+|.++.++..|+.+
T Consensus 11 ~~~~i~~~~-------~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 11 LLKAVLDKL-------DSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLST-IKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHH-------HhCccchhhccCCChhhccCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445566665 235788999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccc
Q 000101 1782 --SGSWTH 1787 (2239)
Q Consensus 1782 --~~Sw~~ 1787 (2239)
++|+++
T Consensus 83 n~~~s~~~ 90 (107)
T smart00297 83 NGPDSEVY 90 (107)
T ss_pred CCCCCHHH
Confidence 777777
No 243
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.62 E-value=1e-05 Score=85.22 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=47.9
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1781 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1781 (2239)
.+.+| .+|++..+||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 25 ~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~L 75 (112)
T cd05510 25 HSTPFLTKVSKREAPDYYDIIKKPMDLGT-MLKKLKNLQYKSKAEFVDDLNL 75 (112)
T ss_pred cccchhcCCChhhcCCHHHHhcCccCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 46789 99999999999999999999999 9999999999999999999998
No 244
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.61 E-value=8.3e-06 Score=85.21 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=54.4
Q ss_pred cccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccc
Q 000101 1730 RLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1796 (2239)
Q Consensus 1730 ~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1796 (2239)
..+.+| ..++.. .+||||.+|++||||+. |.++|+.|+|.++.+...|+.+ ++|+++ ..+.
T Consensus 20 ~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~a~ 93 (108)
T cd05495 20 PESLPFRQPVDPKLLGIPDYFDIVKNPMDLST-IRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSRVY-----KYCT 93 (108)
T ss_pred cccchhcCCCCccccCCCcHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 455677 555544 79999999999999999 9999999999999999999999 889888 6665
Q ss_pred ccc
Q 000101 1797 VLQ 1799 (2239)
Q Consensus 1797 ~~~ 1799 (2239)
.|+
T Consensus 94 ~l~ 96 (108)
T cd05495 94 KLA 96 (108)
T ss_pred HHH
Confidence 554
No 245
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.61 E-value=7.6e-06 Score=84.31 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=56.7
Q ss_pred CCccccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000101 1727 NSRRLTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1793 (2239)
Q Consensus 1727 ~~r~l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1793 (2239)
+++.++.+| ..++ ...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|.++ .
T Consensus 16 ~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~-----~ 89 (102)
T cd05498 16 KHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLST-IKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDHPVH-----A 89 (102)
T ss_pred CCccccCcccCcCCccccCCCcHHHHccCCCcHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----H
Confidence 567888999 5444 4469999999999999999 9999999999999999999998 888777 5
Q ss_pred cccccc
Q 000101 1794 DEQVLQ 1799 (2239)
Q Consensus 1794 d~~~~~ 1799 (2239)
.+..|+
T Consensus 90 ~a~~l~ 95 (102)
T cd05498 90 MARKLQ 95 (102)
T ss_pred HHHHHH
Confidence 555444
No 246
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.58 E-value=0.012 Score=78.91 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=91.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+.....-+..+..+|..|||-+.....-+.+...|...|++...|+-.-. .|+.-+-.+. +..-.+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A---G~~gaVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA---GQPGAVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc---CCCCccccccc
Confidence 446888888888888999999999999999999999999999999988877655 4444444443 23334788999
Q ss_pred ccccccCCCc-Cc----------eEEEcCCCCCcchHHHhhhhhcccCCc
Q 000101 1405 AAGRGLNLQS-AD----------TVIIYDPDPNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1405 AGGeGLNLqa-AD----------tVIifDppWNP~~dlQAiGRAhRIGQk 1443 (2239)
-+|+|-||.- .+ +||=-...-+-..+.|--||++|.|-.
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 9999999873 22 567777778888888999999999943
No 247
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.55 E-value=1.4e-05 Score=84.13 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=52.6
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
+.+.+| .+|+...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|.++
T Consensus 16 ~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~ 83 (112)
T cd05511 16 PDSWPFHTPVNKKKVPDYYKIIKRPMDLQT-IRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYT 83 (112)
T ss_pred CCchhhcCCCChhhcccHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 456788 99999999999999999999999 9999999999999999999998 777776
No 248
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.40 E-value=1.8e-05 Score=82.78 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=55.8
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhcc---CccccccccccccCC----------CCCccccCCccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEE---GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1795 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~lee---g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1795 (2239)
..+.+| .+|+. .+|+||.+|++||||++ |..+|++ |+|+++.+...|+.+ ++|+++ ..+
T Consensus 20 ~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~t-I~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~a 92 (109)
T cd05502 20 ELSLPFHEPVSP-SVPNYYKIIKTPMDLSL-IRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDSEVA-----QAG 92 (109)
T ss_pred CCChhhcCCCCC-CCCCHHHHCCCCccHHH-HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 567888 77777 89999999999999999 9999999 699999999999999 888888 666
Q ss_pred cccc
Q 000101 1796 QVLQ 1799 (2239)
Q Consensus 1796 ~~~~ 1799 (2239)
..|+
T Consensus 93 ~~l~ 96 (109)
T cd05502 93 KELE 96 (109)
T ss_pred HHHH
Confidence 6665
No 249
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.39 E-value=0.00019 Score=97.28 Aligned_cols=99 Identities=14% Similarity=0.267 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
++.|..++.+|... |..| +|...-.+.++|||+++ |++|||+.++..++....|.++++|..|+.||+.||+.
T Consensus 567 ~kLl~~~l~~lq~k-D~~g-----if~~pvd~~e~pdy~~i-ik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~ 639 (1051)
T KOG0955|consen 567 KKLLQKSLDKLQKK-DSYG-----IFAEPVDPSELPDYIDI-IKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCME 639 (1051)
T ss_pred HHHHHHHHHHhhcc-cccC-----ceeeccChhhcccHHHH-hcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHH
Confidence 33455565555433 4444 56666778899999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2019 FYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||.-+.-.|.+|..+.++--..+..+
T Consensus 640 yn~~dtv~~r~av~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 640 YNAKDTVYYRAAVRLRELIKKDFRNA 665 (1051)
T ss_pred hhccCeehHhhhHHHHhhhhhHHHhc
Confidence 99999999999999988766554443
No 250
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.37 E-value=2.4e-05 Score=80.22 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=52.4
Q ss_pred cccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1732 TQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1732 ~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
+.+| .+++ +..+|+||++|++||||+. |..+|+.|.|.++.+...|+.+ ++|+++ +.+..|
T Consensus 18 ~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~-----~~a~~l 91 (99)
T cd05506 18 GWVFNAPVDVVALGLPDYFDIIKKPMDLGT-VKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDVH-----TMAKEL 91 (99)
T ss_pred CccccCCCCccccCCCCHHHHHcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 5577 4444 4479999999999999999 9999999999999999999998 888888 666555
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 92 ~ 92 (99)
T cd05506 92 L 92 (99)
T ss_pred H
Confidence 4
No 251
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=97.36 E-value=1.2e-05 Score=103.36 Aligned_cols=236 Identities=14% Similarity=0.034 Sum_probs=164.5
Q ss_pred CCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000101 1725 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1793 (2239)
Q Consensus 1725 ~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1793 (2239)
+-+|+.+...| +||+++.+|+||-.|..||.|.. |..++.+|.|.+++....||.+ ++|.++ +
T Consensus 69 d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~-ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~-----~ 142 (629)
T KOG1827|consen 69 DDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQ-IKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIY-----K 142 (629)
T ss_pred cccCcccchhHhhccccccCCCcceeecCcccHHH-HHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhh-----h
Confidence 44899999999 99999999999999999999999 9999999999999999999988 888888 7
Q ss_pred ccccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCc
Q 000101 1794 DEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSS 1873 (2239)
Q Consensus 1794 d~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 1873 (2239)
+...|+.-+.+.+.- .+..+ .+..+.....+ .--.++..+.
T Consensus 143 ~s~~l~~~~~~~~~~----~~d~e----~s~~~~~~l~~----------------------------~~l~~~~~~~--- 183 (629)
T KOG1827|consen 143 DSGELEKYFISLEDE----KKDGE----LSMESNEELKA----------------------------GGLHYHELGP--- 183 (629)
T ss_pred hhhhhhcchhhhhcc----ccchh----hcccccccccc----------------------------CCCCcccCCC---
Confidence 777777544432211 00000 00111000000 0001111000
Q ss_pred ccccCCCccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhh
Q 000101 1874 KSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRI 1953 (2239)
Q Consensus 1874 ~~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kl~~~~ 1953 (2239)
.+. ||-.|..+ | -| -+++..
T Consensus 184 --------------------------------~~i---------~~~~~~~g----------------d-~v--lv~~~~ 203 (629)
T KOG1827|consen 184 --------------------------------VEI---------DGTKYIVG----------------D-YV--LVQNPA 203 (629)
T ss_pred --------------------------------ccc---------cCcccccC----------------c-ee--eecCcc
Confidence 000 01001000 0 01 123333
Q ss_pred c-cCCCcc-hhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHH
Q 000101 1954 E-KEGHQI-VPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEAR 2031 (2239)
Q Consensus 1954 d-~~Gr~l-~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~ 2031 (2239)
| ..|+.. +.-|++.|....||.||.+ +.-++=++-..+++..+||.....|..|+-++|-|++.|+.+..=+|.|+.
T Consensus 204 d~~~p~v~~Ier~w~~~dg~k~~~~~w~-~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~ 282 (629)
T KOG1827|consen 204 DNLKPIVAQIERLWKLPDGEKWPQGCWI-YRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPE 282 (629)
T ss_pred cccCCceeeecccccCcccccccceeEe-eCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcc
Confidence 3 556665 6788999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCC-CCchHHhhhc---ccccCCCCCC
Q 000101 2032 KVHDLFFDLLKI-AFP-DTDFREARSA---LSFTGPLSTS 2066 (2239)
Q Consensus 2032 ~L~~~f~~~~k~-~fP-~~df~~a~~a---~~~~~~~~~~ 2066 (2239)
+|.+.+.-..-- +++ +-+|.++|.- +=++.+.++.
T Consensus 283 ~ls~~dv~lcesRyn~~~K~f~kirsw~~~~p~E~~~~~~ 322 (629)
T KOG1827|consen 283 NLSEEDVFLCESRYNEQLKKFNKIRSWKAFLPREVPLTLK 322 (629)
T ss_pred cccccceeeEEeeeccchhhhccccCchhcCccccCCccc
Confidence 998776544333 333 4578888873 3344444433
No 252
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=97.36 E-value=2.7e-05 Score=76.64 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=50.4
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
..+.+| .+|+...+|+|+.+|+.||||+. |.++|+.|+|.++.++..|+.+ ++|.++
T Consensus 12 ~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~-I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~ 79 (84)
T PF00439_consen 12 PISSPFSKPVDPKEYPDYYEIIKNPMDLST-IRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIY 79 (84)
T ss_dssp TTGGGGSSSTHTTTSTTHHHHSSSS--HHH-HHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CCchhhcCCCChhhCCCHHHHHhhccchhh-hhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHH
Confidence 477889 88899999999999999999999 9999999999999999999988 677665
No 253
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.35 E-value=3.1e-05 Score=83.26 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=55.7
Q ss_pred CCccccccc-CCCCcc-cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1727 NSRRLTQIV-SPVSPQ-KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1727 ~~r~l~~~f-~lps~~-~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
.++.++.+| .+++.. .+|+||.+|+.||||.. |.++|+.|+|.++.+...|+.+ ++|-++
T Consensus 40 ~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~ 111 (128)
T cd05529 40 LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLET-IRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIA 111 (128)
T ss_pred ccCcccccccCCCCccccCCcHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 588899999 888888 99999999999999999 9999999999999999999998 777666
No 254
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.27 E-value=3.2e-05 Score=76.94 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=53.7
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
+....+| .+|+...+|+||.+|++||||.. |..+|+.|+|.++.+...|+.+ ++++++
T Consensus 17 ~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~ 85 (99)
T cd04369 17 RDLSEPFLEPVDPKEAPDYYEVIKNPMDLST-IKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIY 85 (99)
T ss_pred ccccHHHhcCCChhcCCCHHHHHhCcccHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4678889 99999999999999999999999 9999999999999999999998 677776
No 255
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.25 E-value=0.00024 Score=61.15 Aligned_cols=34 Identities=44% Similarity=0.674 Sum_probs=32.0
Q ss_pred CcchhHHHHHHHHHHHhhccccCCCCChHHHHHhc
Q 000101 473 GFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507 (2239)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (2239)
-||..|++.||+||+|||-|.+|.. +|++|+.+|
T Consensus 2 ~FT~~Ql~~L~~Qi~ayK~l~~~~p-VP~~l~~~I 35 (37)
T PF08880_consen 2 PFTPAQLQELRAQILAYKYLARNQP-VPPQLQQAI 35 (37)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHhh
Confidence 5999999999999999999999887 999999887
No 256
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.23 E-value=3.9e-05 Score=79.42 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=53.6
Q ss_pred cccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccc
Q 000101 1730 RLTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1796 (2239)
Q Consensus 1730 ~l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1796 (2239)
..+.+| ..++ +..+|+||.+|++||||+. |..+|+.|.|.++.+...|+.+ ++|+++ ..+.
T Consensus 20 ~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~ 93 (103)
T cd05500 20 KDARPFLVPVDPVKLNIPHYPTIIKKPMDLGT-IERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPVS-----QMGK 93 (103)
T ss_pred CCChhhcCCCCcccccCCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 345677 5544 4589999999999999999 9999999999999999999998 788887 5555
Q ss_pred ccc
Q 000101 1797 VLQ 1799 (2239)
Q Consensus 1797 ~~~ 1799 (2239)
.++
T Consensus 94 ~l~ 96 (103)
T cd05500 94 RLQ 96 (103)
T ss_pred HHH
Confidence 554
No 257
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.18 E-value=0.00016 Score=76.60 Aligned_cols=55 Identities=7% Similarity=-0.022 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhccCCCcchhhhhhhccc--ccCCCccccccCCccChHHHHHhhccCCC
Q 000101 1941 RCKNVISKLQRRIEKEGHQIVPLLTDLWKR--IETSGYVSGAGNNILDLRKIDQRVDRLEY 1999 (2239)
Q Consensus 1941 kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R--~~~PdYY~v~I~~PiDL~~I~qri~~~eY 1999 (2239)
.|..+++.|+..+ .+..+..|...+.. ...||||++ |++||||.+|..+|...+|
T Consensus 4 ~~~~~l~~l~~~~---~~~~~~pF~~PVd~~~~~~pdY~~i-IK~PMDL~ti~~kl~~~~~ 60 (114)
T cd05494 4 ALERVLRELKRHR---RNEDAWPFLEPVNPPRRGAPDYRDV-IKRPMSFGTKVNNIVETGA 60 (114)
T ss_pred HHHHHHHHHHHhh---hCCCCCCcCCCCCchhcCCCChhhh-cCCCCChHHHHHHHHcccc
Confidence 4667777775554 37889999998666 999999999 9999999999999988644
No 258
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=97.17 E-value=7.8e-05 Score=78.28 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=42.6
Q ss_pred CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000101 1736 SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1781 (2239)
Q Consensus 1736 ~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1781 (2239)
.-|++.++|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 29 ~~~~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~L 73 (109)
T cd05492 29 KRGKATKLPKRRRLIHTHLDVAD-IQEKINSEKYTSLEEFKADALL 73 (109)
T ss_pred cCchhccCCCHHHHhCCCCcHHH-HHHHHHcCCCCCHHHHHHHHHH
Confidence 55777889999999999999999 9999999999999999999998
No 259
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=97.16 E-value=0.00024 Score=95.91 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=108.0
Q ss_pred CccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCC-ccccccCcHHHHHHHHHHH----HHHHHhh-
Q 000101 1880 PSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGS-SNFSAKMSDVIQRRCKNVI----SKLQRRI- 1953 (2239)
Q Consensus 1880 psrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs-~~~~~kl~~~mq~kck~vl----~kl~~~~- 1953 (2239)
|-+-|.+|..|+-+.|..+---|....+--.|+.+++.|...||-+-. +- +-+..|=.-|-+.+ .+||+..
T Consensus 1294 yy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t---~~~q~mls~~~~~~~ekedk~~~lEk 1370 (1563)
T KOG0008|consen 1294 YYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLT---RQQQSMLSLCFEKLKEKEDKLWRLEK 1370 (1563)
T ss_pred hhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHH---HHHHHHHHHHHHhhchhHHHHHHHHh
Confidence 444588888888877766555555444444555566666667774433 11 11112211222221 1122211
Q ss_pred ------ccCCCc----------------chhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1954 ------EKEGHQ----------------IVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1954 ------d~~Gr~----------------l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
|.+++. =++.|...-..+..|+||.+ |++||||.+|.+++..-+|.+..||..|+.+
T Consensus 1371 ~Inplld~~d~v~~~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~k-ik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~ 1449 (1563)
T KOG0008|consen 1371 AINPLLDDDDQVAFFILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKK-IKNPMDLETILKNIPPHKYDSRSEFLDDVNL 1449 (1563)
T ss_pred hcCcccCccchhhHhhhhhHHHHHHhcchhcccccccchhhchHHHHH-hcChhhHHHHhhcCCccccccHHHHhhhhHh
Confidence 222221 12345556677889999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
++-||..||+..+..-.-|+++-.+-...+...
T Consensus 1450 i~~n~~~~ng~e~~y~~k~~k~~ev~~~~~~e~ 1482 (1563)
T KOG0008|consen 1450 IYVNSVEYNGAESAYTKKARKIGEVGLANLLEY 1482 (1563)
T ss_pred hcccceeecCccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999988888887777766655544
No 260
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.04 E-value=0.00074 Score=81.16 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcC--------ceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh--
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA-- 1453 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA--------DtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva-- 1453 (2239)
...+.|+++ ...|+||| +||++||.|++- .+-|.+.++|+....+|..||+||-||.....+..+++
T Consensus 52 ~e~~~F~~g--~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDG--EKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCC--CceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456789974 44566665 999999999962 23478999999999999999999999997654444433
Q ss_pred -hhhhhhhh
Q 000101 1454 -VVDKISSH 1461 (2239)
Q Consensus 1454 -VEEkI~s~ 1461 (2239)
.|.++...
T Consensus 129 ~gE~Rfas~ 137 (278)
T PF13871_consen 129 PGERRFAST 137 (278)
T ss_pred HHHHHHHHH
Confidence 44444443
No 261
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.94 E-value=0.016 Score=69.81 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=71.2
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs----QW~~Ef~Kwa 1073 (2239)
+..+++-|+.|+--|. .|-|.=..||=|||+++. +.+++.... ..++=||+.+..|. +|...|-+++
T Consensus 75 g~~p~~vQll~~l~L~------~G~laEm~TGEGKTli~~-l~a~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH------KGRLAEMKTGEGKTLIAA-LPAALNALQ--GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHHH------TTSEEEESTTSHHHHHHH-HHHHHHHTT--SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhcc------cceeEEecCCCCcHHHHH-HHHHHHHHh--cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 4456666888875442 244888999999999985 444444322 24677777766543 3888888877
Q ss_pred CCCceEE-Eecch-hhHHHHHHHHhhcCccEEEEehhHHHHh--hh-------hcccCCceEEEecccccc
Q 000101 1074 PSVSCIY-YVGAK-DQRSRLFSQVAALKFNVLVTTYEFIMYD--RS-------KLSKVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1074 Pslkvvv-y~Gsk-d~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s-------~L~kikWd~VIIDEAHrI 1133 (2239)
. +.+-+ +.+.. ..|+..+ ..+|+-+|-..+..| ++ ......++++||||++.+
T Consensus 146 G-lsv~~~~~~~~~~~r~~~Y------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 146 G-LSVGIITSDMSSEERREAY------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp T---EEEEETTTEHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred h-hccccCccccCHHHHHHHH------hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 4 44433 33332 3333332 457998888777654 11 112347899999999987
No 262
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=96.94 E-value=0.00044 Score=90.69 Aligned_cols=91 Identities=11% Similarity=0.031 Sum_probs=75.5
Q ss_pred chhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHH
Q 000101 1960 IVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFD 2039 (2239)
Q Consensus 1960 l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~ 2039 (2239)
=.+.|...-++...|+||.+ |+-||||.++..++..+-|.++++|+.|+.+|++||..||.+.+.--..=..+.+-+--
T Consensus 303 ~s~~~~~kvs~~~a~~y~~i-~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~~~~s~ 381 (720)
T KOG1472|consen 303 HSTPFLEKVSKEDAPNYYQI-IKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIMNSKSL 381 (720)
T ss_pred cccccccCCChhhCcchHHh-hhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhhccCcH
Confidence 35679999999999999999 99999999999999999999999999999999999999999876554444444444444
Q ss_pred HHHHhCCCCchH
Q 000101 2040 LLKIAFPDTDFR 2051 (2239)
Q Consensus 2040 ~~k~~fP~~df~ 2051 (2239)
.+-.++|+.++.
T Consensus 382 ~~~~~~~~~li~ 393 (720)
T KOG1472|consen 382 ALIKEIPIELIG 393 (720)
T ss_pred hHhccchhhhcc
Confidence 444788865543
No 263
>PRK10536 hypothetical protein; Provisional
Probab=96.92 E-value=0.0024 Score=76.24 Aligned_cols=143 Identities=21% Similarity=0.160 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCc---
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS--- 1077 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslk--- 1077 (2239)
+-..|...+.|+.. +...++.-+.|+|||..++++....+.. +....++|+-|.-.. .|...|+|+-.
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v~~----ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVLQA----DEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCc----hhhhCcCCCCHHHH
Confidence 55678888887764 4577888999999999999998865532 334344443343222 23333333210
Q ss_pred eEE-----------EecchhhHHHHHHHH-hhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhh
Q 000101 1078 CIY-----------YVGAKDQRSRLFSQV-AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1145 (2239)
Q Consensus 1078 vvv-----------y~Gskd~Rk~l~~~i-~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk 1145 (2239)
... +.|... .... ....-.|-|.+..+++ .+. +.-.+||||||+++.- ......|.
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~-----~~~~~~~~~~~Iei~~l~ymR-Grt----l~~~~vIvDEaqn~~~--~~~k~~lt 198 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASF-----MQYCLRPEIGKVEIAPFAYMR-GRT----FENAVVILDEAQNVTA--AQMKMFLT 198 (262)
T ss_pred HHHHHHHHHHHHHHHhChHH-----HHHHHHhccCcEEEecHHHhc-CCc----ccCCEEEEechhcCCH--HHHHHHHh
Confidence 000 011110 1111 1112345566655553 222 3558999999999853 55556677
Q ss_pred ccccceEEEecCCCCCCCH
Q 000101 1146 RYRCQRRLLLTGTPLQNDL 1164 (2239)
Q Consensus 1146 ~Lka~rRLLLTGTPIQNnL 1164 (2239)
++....+++++|-|-|.++
T Consensus 199 R~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 199 RLGENVTVIVNGDITQCDL 217 (262)
T ss_pred hcCCCCEEEEeCChhhccC
Confidence 8888899999999977664
No 264
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=96.89 E-value=0.00021 Score=74.21 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=41.9
Q ss_pred cccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000101 1732 TQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1781 (2239)
Q Consensus 1732 ~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1781 (2239)
+.+| .-| ..+||||.+|++||||++ |..+|..|+|.++.+...|+.+
T Consensus 20 s~~f~~~p--~~~pdY~~iIk~PMDL~t-I~~kL~~~~Y~s~~ef~~D~~L 67 (102)
T cd05501 20 SGFFISKP--YYIRDYCQGIKEPMWLNK-VKERLNERVYHTVEGFVRDMRL 67 (102)
T ss_pred cccccCCC--CCCCchHHHcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 3455 433 599999999999999999 9999999999999999999988
No 265
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.81 E-value=0.0058 Score=70.93 Aligned_cols=147 Identities=27% Similarity=0.311 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH-----HHHHCCC
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE-----LHKWLPS 1075 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~E-----f~KwaPs 1075 (2239)
+-++|...++.|.. ....++.-..|+|||+.|++..++++.. +....++|+-|..-+..+.-- -+|..|.
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 44689998888773 4567888899999999999999888763 666676666665533221110 0111111
Q ss_pred CceEE-----EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccc
Q 000101 1076 VSCIY-----YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1150 (2239)
Q Consensus 1076 lkvvv-----y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~ 1150 (2239)
+..+. +.+. .....+ + ..-.|-+.+..+++ -+ .+++.+||||||+++. ...+...|.++...
T Consensus 80 ~~p~~d~l~~~~~~-~~~~~~---~--~~~~Ie~~~~~~iR-Gr----t~~~~~iIvDEaQN~t--~~~~k~ilTR~g~~ 146 (205)
T PF02562_consen 80 LRPIYDALEELFGK-EKLEEL---I--QNGKIEIEPLAFIR-GR----TFDNAFIIVDEAQNLT--PEELKMILTRIGEG 146 (205)
T ss_dssp THHHHHHHTTTS-T-TCHHHH---H--HTTSEEEEEGGGGT-T------B-SEEEEE-SGGG----HHHHHHHHTTB-TT
T ss_pred HHHHHHHHHHHhCh-HhHHHH---h--hcCeEEEEehhhhc-Cc----cccceEEEEecccCCC--HHHHHHHHcccCCC
Confidence 11000 0011 111111 1 13345555555443 11 2356899999999985 34455567788888
Q ss_pred eEEEecCCCCCCCHH
Q 000101 1151 RRLLLTGTPLQNDLK 1165 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ 1165 (2239)
.+++++|-|.|.++.
T Consensus 147 skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 147 SKIIITGDPSQIDLP 161 (205)
T ss_dssp -EEEEEE--------
T ss_pred cEEEEecCceeecCC
Confidence 999999999887654
No 266
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.75 E-value=0.0054 Score=77.35 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=97.1
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH----cCC----eEEeecCCCCHHHHHHHHHHHhcCCCCcc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQL----VYRRIDGTTSLEDRESAIVDFNSHDSDCF 1397 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~----rGi----ky~RLDGsts~eeRqeiL~~FNs~ds~~~ 1397 (2239)
+.|+.-...|+.++...|-|+|-||..+.+++++....+. -+- .+..+.|+...++|.++-.+...+ + .
T Consensus 508 ~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G--~-L 584 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG--K-L 584 (1034)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC--e-e
Confidence 4466666778888888899999999999988776544332 221 133467899999999988776643 2 2
Q ss_pred EEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcc-eEEEEEEehhhh
Q 000101 1398 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEAVVD 1456 (2239)
Q Consensus 1398 VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkK-eV~VyrLvaVEE 1456 (2239)
.-+|+|.|..+|||+-..|.||++..|.+..++.|..|||+|-.... .|+|.....|+.
T Consensus 585 ~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ 644 (1034)
T KOG4150|consen 585 CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQ 644 (1034)
T ss_pred eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhh
Confidence 36899999999999999999999999999999999999999977543 344444444443
No 267
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.71 E-value=0.2 Score=63.46 Aligned_cols=104 Identities=19% Similarity=0.178 Sum_probs=64.4
Q ss_pred CeEEEEEccHHHHHHHHHHHHHc---------CCeEEeecCCCCHHHHHHHHHHH--hcCCCCccEEEEeccccccccCC
Q 000101 1344 HRVLLFSTMTKLLDILEEYLQWR---------QLVYRRIDGTTSLEDRESAIVDF--NSHDSDCFIFLLSIRAAGRGLNL 1412 (2239)
Q Consensus 1344 hKVLIFSQ~t~~LDILed~L~~r---------Giky~RLDGsts~eeRqeiL~~F--Ns~ds~~~VfLLSTrAGGeGLNL 1412 (2239)
.-+|||-...+.++..++.+... .++++-|+ ..+.+.+++-- +..+..-+-+++||..+...|.+
T Consensus 254 GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslti 329 (699)
T KOG0925|consen 254 GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTI 329 (699)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeee
Confidence 35788866655555444444311 24455565 22333332211 11123345689999999999988
Q ss_pred CcCceEEEcCCC------CCc-----------chHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1413 QSADTVIIYDPD------PNP-----------KNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1413 qaADtVIifDpp------WNP-----------~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
..+-+|| |+- +|| ..-.||.-|++|.|.+++-..|+|.+
T Consensus 330 dgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYt 385 (699)
T KOG0925|consen 330 DGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYT 385 (699)
T ss_pred ccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeec
Confidence 8776665 443 344 44568888999999999988888876
No 268
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=96.48 E-value=0.01 Score=57.75 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000101 808 AMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870 (2239)
Q Consensus 808 ~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~~~~kr~e~~~~~r~~~lk~ 870 (2239)
......|..|+.+.++|.+.+...........++|..||...+++..+++++++++||++|++
T Consensus 11 ~h~d~lL~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~~ 73 (73)
T PF07529_consen 11 THHDHLLEEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALKS 73 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 334456899999999999988888777788899999999999999999999999999999974
No 269
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.35 E-value=0.011 Score=73.37 Aligned_cols=90 Identities=24% Similarity=0.239 Sum_probs=53.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH-HHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCcc
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW-KSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFN 1101 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW-~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfd 1101 (2239)
|+--..|+|||+.++.++..+.. .......+++|+...+.+. ...|..-. ......
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~----------------------~~~~~~ 61 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKY----------------------NPKLKK 61 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhc-cccCCceEEEEecchHHHHHHHHHhhhc----------------------ccchhh
Confidence 56677999999999999988821 2334567888887755443 33443322 000112
Q ss_pred EEEEehhHHHHhhh--hcccCCceEEEecccccccC
Q 000101 1102 VLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1102 VVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN 1135 (2239)
..+..+..++.... ......+++|||||||++..
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 62 SDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 22333333333222 23345799999999999965
No 270
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.21 E-value=0.011 Score=66.31 Aligned_cols=103 Identities=21% Similarity=0.286 Sum_probs=68.2
Q ss_pred HHhcCCeEEEEEccHHHHHHHHHHHHHcC----CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc--ccccccCC
Q 000101 1339 LQRTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR--AAGRGLNL 1412 (2239)
Q Consensus 1339 LkatGhKVLIFSQ~t~~LDILed~L~~rG----iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr--AGGeGLNL 1412 (2239)
+...+.++|||+..-..++.+.+++.... +.+..- + ..++..+++.|..... .+|+++. ...+|||+
T Consensus 5 ~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 5 ISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDF 77 (167)
T ss_dssp HHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhccC---eEEEEEecccEEEeecC
Confidence 34567899999999999999999997653 333222 2 3578899999997433 4788888 99999999
Q ss_pred Cc--CceEEEcCCCC-Ccch-----------------------------HHHhhhhhcccCCcceEEE
Q 000101 1413 QS--ADTVIIYDPDP-NPKN-----------------------------EEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1413 qa--ADtVIifDppW-NP~~-----------------------------dlQAiGRAhRIGQkKeV~V 1448 (2239)
.+ |..||+.-.|+ +|.. ..|++||+.|-....-+.+
T Consensus 78 ~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 78 PGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred CCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 95 88999999986 3321 2488999999766544433
No 271
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=96.20 E-value=0.016 Score=57.03 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000101 811 EKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870 (2239)
Q Consensus 811 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~~~~kr~e~~~~~r~~~lk~ 870 (2239)
.-.|..++.|+++|.+.+..........++.|..||.+.++++.|+.++++++||++|++
T Consensus 14 d~lL~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~~ 73 (73)
T smart00573 14 DHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445899999999999988777777777889999999999999999989999999999963
No 272
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.20 E-value=0.0078 Score=63.11 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=59.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHh--CCCCC-eEEEechHH-HHHHHHHHHHHCC-CCceEEEecchhhHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFK--GNYGP-HLIIVPNAV-LVNWKSELHKWLP-SVSCIYYVGAKDQRSRLFS 1093 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k--~~~GP-~LIVVP~SL-LsQW~~Ef~KwaP-slkvvvy~Gskd~Rk~l~~ 1093 (2239)
+..+++.-+.|+|||..+-.++..+.... ....+ +.|-+|... ...+..++...+. .... ......+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~l-- 75 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------RQTSDEL-- 75 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS------TS-HHHH--
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc------cCCHHHH--
Confidence 34568889999999988877776664321 11122 333345443 4444444443321 1110 0001111
Q ss_pred HHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc--ccceEEEecCCC
Q 000101 1094 QVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLTGTP 1159 (2239)
Q Consensus 1094 ~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L--ka~rRLLLTGTP 1159 (2239)
+..-...+....-.+|||||+|++. .......|..+ .....++|+|||
T Consensus 76 ----------------~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 76 ----------------RSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp ----------------HHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ----------------HHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 1011122333333799999999983 24444455444 566689999998
No 273
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.17 E-value=0.0033 Score=85.40 Aligned_cols=179 Identities=23% Similarity=0.304 Sum_probs=97.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCch--HHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLG--KTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLG--KTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslk 1077 (2239)
.+.+||...+.-....... ...++++.|+| ||+.+..++.+... .+.....++++|..+..+|..+...++..-.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVLNELAL--RVLIADEVGLGDLKTIEAGAILKELLL-RGEIKRVLILVPKTLRAQWVVELLEKFNIRL 160 (866)
T ss_pred ccCcchhhhhhhhhhhhhh--chhhcccccccccccccccccchHhhh-hhhhccceeccchHHHHHHHHHhhhhccccc
Confidence 5666666655433332222 26888999999 89998777665553 5566788999999999999999877642211
Q ss_pred eEEEec-chhhHHHHHHHHhhcCccEEEEehhHHHHh----hhhcccCCc---eEEEecccccccChh---------hHH
Q 000101 1078 CIYYVG-AKDQRSRLFSQVAALKFNVLVTTYEFIMYD----RSKLSKVDW---KYIIIDEAQRMKDRE---------SVL 1140 (2239)
Q Consensus 1078 vvvy~G-skd~Rk~l~~~i~~~kfdVVITTYE~L~kD----~s~L~kikW---d~VIIDEAHrIKN~~---------SKl 1140 (2239)
.++... ...................+++........ ...+....| +++++||+|.+.+.. ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (866)
T COG0553 161 AVLDKEGLRYLLKQYDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETLE 240 (866)
T ss_pred hhhhhhhhhhhhhhhcccccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchhhhH
Confidence 111111 110000000000000000023333333222 223344456 899999999987631 223
Q ss_pred HHHhhccc--cc------eEEEecCCCCCCCHHHHHHHHhhhcCcccCC
Q 000101 1141 ARDLDRYR--CQ------RRLLLTGTPLQNDLKELWSLLNLLLPEVFDN 1181 (2239)
Q Consensus 1141 skaLk~Lk--a~------rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s 1181 (2239)
+..+.... .. ..+++++||......+++...+++.+..+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 241 YELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred HHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 33333221 11 2347899998888877777666666655544
No 274
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.10 E-value=0.058 Score=62.04 Aligned_cols=125 Identities=25% Similarity=0.278 Sum_probs=67.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceE
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvv 1079 (2239)
+|-+-|.+++..++. +...-.+|.-.-|+|||.....++ ..+...+ ..+++++|+..... ++.+-+
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~-~~~~~~g--~~v~~~apT~~Aa~---~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALA-EALEAAG--KRVIGLAPTNKAAK---ELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHH-HHHHHTT----EEEEESSHHHHH---HHHHHH------
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHH-HHHHhCC--CeEEEECCcHHHHH---HHHHhh------
Confidence 478899999999875 122235777889999998655544 4444333 68899999875432 122210
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhc------ccCCceEEEecccccccChhhHHHHHhhcccc-ceE
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKL------SKVDWKYIIIDEAQRMKDRESVLARDLDRYRC-QRR 1152 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L------~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka-~rR 1152 (2239)
.+-..|...+....... .....++||||||-.+-+ ..+...+..... ..+
T Consensus 67 ---------------------~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~--~~~~~ll~~~~~~~~k 123 (196)
T PF13604_consen 67 ---------------------GIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS--RQLARLLRLAKKSGAK 123 (196)
T ss_dssp ---------------------TS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH--HHHHHHHHHS-T-T-E
T ss_pred ---------------------CcchhhHHHHHhcCCcccccccccCCcccEEEEecccccCH--HHHHHHHHHHHhcCCE
Confidence 01122333332221111 023568999999998843 233344444433 568
Q ss_pred EEecCCCCC
Q 000101 1153 LLLTGTPLQ 1161 (2239)
Q Consensus 1153 LLLTGTPIQ 1161 (2239)
|+|.|-|-|
T Consensus 124 lilvGD~~Q 132 (196)
T PF13604_consen 124 LILVGDPNQ 132 (196)
T ss_dssp EEEEE-TTS
T ss_pred EEEECCcch
Confidence 999999865
No 275
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.91 E-value=0.081 Score=54.75 Aligned_cols=106 Identities=18% Similarity=0.093 Sum_probs=56.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhc
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
+...+|.-+.|+|||..+-.++..+. ....+++++........+......+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------ 71 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------------------------ 71 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------------------------
Confidence 55678999999999977666655443 123455555444444333322211110
Q ss_pred CccEEEEehhHHHHhhhhcccCCceEEEecccccccC-hhhHHHHHhhccc------cceEEEecCCCCC
Q 000101 1099 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRYR------CQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN-~~SKlskaLk~Lk------a~rRLLLTGTPIQ 1161 (2239)
..... ..........+|||||+|++.. ....+...+..+. ...++++|+++..
T Consensus 72 --------~~~~~--~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLL--FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHH--HHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00000 1111223567999999999832 2234444455442 4567777777643
No 276
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.62 E-value=0.06 Score=69.92 Aligned_cols=132 Identities=20% Similarity=0.307 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaPslkv 1078 (2239)
+|-.-|..+|..++. +.-.||-...|+|||++..+++.+|.+. ..+|+||++|..+ +.|....|.+-. +++
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tg--LKV 481 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTG--LKV 481 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcC--ceE
Confidence 788899999998886 5557899999999999998888888864 5689999999884 677777777642 443
Q ss_pred EEEecchh----------------------hHHHHH------------------------HHHhhcCccEEEEehhHHHH
Q 000101 1079 IYYVGAKD----------------------QRSRLF------------------------SQVAALKFNVLVTTYEFIMY 1112 (2239)
Q Consensus 1079 vvy~Gskd----------------------~Rk~l~------------------------~~i~~~kfdVVITTYE~L~k 1112 (2239)
+-...... +-..+. ..-.....+||.||--..
T Consensus 482 vRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~A-- 559 (935)
T KOG1802|consen 482 VRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGA-- 559 (935)
T ss_pred eeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccc--
Confidence 32221110 000000 001123456777774322
Q ss_pred hhhhcccCCceEEEecccccccChhhHHH
Q 000101 1113 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1141 (2239)
Q Consensus 1113 D~s~L~kikWd~VIIDEAHrIKN~~SKls 1141 (2239)
-...|.+++|..|+||||--.-.+.+.+-
T Consensus 560 gd~rl~~~kfr~VLiDEaTQatEpe~LiP 588 (935)
T KOG1802|consen 560 GDRRLSKFKFRTVLIDEATQATEPECLIP 588 (935)
T ss_pred cchhhccccccEEEEecccccCCcchhhh
Confidence 12356778999999999987665555443
No 277
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.57 E-value=0.068 Score=69.36 Aligned_cols=150 Identities=22% Similarity=0.281 Sum_probs=92.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHH-------
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELH------- 1070 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~------- 1070 (2239)
..|-+-|..++.+++. +..--|+-...|+|||.+..-+|..++..+ ..+||.+|+. .+.|..+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~~~~~~l~ 257 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLTHLKLNLV 257 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHhcccccchh
Confidence 3678899999998876 222347778999999999999999888632 5789999988 5778777432
Q ss_pred ------HHCCC-----CceEEEecc----------------------h--hhHHHHH-------HHH----------hhc
Q 000101 1071 ------KWLPS-----VSCIYYVGA----------------------K--DQRSRLF-------SQV----------AAL 1098 (2239)
Q Consensus 1071 ------KwaPs-----lkvvvy~Gs----------------------k--d~Rk~l~-------~~i----------~~~ 1098 (2239)
+..+. +..++-.+. + ..++.++ ..+ ...
T Consensus 258 R~g~paRl~~~~~~~sld~~~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~ 337 (649)
T KOG1803|consen 258 RVGHPARLLESVADHSLDLLSNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIIS 337 (649)
T ss_pred hcCchhhhhhhhhhhHHHHHHhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11110 111111110 0 0011000 001 123
Q ss_pred CccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCC
Q 000101 1099 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
...||++|-..-.. ..+.+..|++||||||--...+.|.+. + -...+++|.|-|.|
T Consensus 338 n~~VVfaTl~ga~~--~~~~~~~fD~vIIDEaaQamE~~cWip--v---lk~kk~ILaGDp~Q 393 (649)
T KOG1803|consen 338 NSRVVFATLGGALD--RLLRKRTFDLVIIDEAAQAMEPQCWIP--V---LKGKKFILAGDPKQ 393 (649)
T ss_pred ccceEEEeccchhh--hhhcccCCCEEEEehhhhhccchhhhH--H---hcCCceEEeCCccc
Confidence 45688877655443 455667899999999977665555432 2 22348999999865
No 278
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.52 E-value=0.047 Score=69.26 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=49.0
Q ss_pred CCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
.|..|.-...+|-|.+=..-+......+.+|||-...|+|||+.-++++.......+....-||-|-
T Consensus 8 l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 8 LLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred eeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 3444444578888876555555666788899999999999999999988776655554445577763
No 279
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.45 E-value=0.13 Score=68.97 Aligned_cols=67 Identities=24% Similarity=0.209 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
..|-+.|..+|.+++. +....|+-...|+|||.+++.++..++.. ..++||++|+. .+.+....+..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 4688999999988764 22456888899999999998888887752 23899999987 46677776765
No 280
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=95.41 E-value=0.0027 Score=77.75 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=62.1
Q ss_pred cCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHH
Q 000101 1972 ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFF 2038 (2239)
Q Consensus 1972 ~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~ 2038 (2239)
-.|+|-++ |+.|||+.+|.++|+-.+|.+..+|..|++||..||.+||-...-+|..|..|..+-.
T Consensus 48 map~y~~i-is~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~ 113 (418)
T KOG1828|consen 48 MAPNYLEI-ISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRL 113 (418)
T ss_pred hccchHhh-hhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhc
Confidence 36999999 9999999999999999999999999999999999999999999999999999877643
No 281
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.35 E-value=0.083 Score=70.80 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (2239)
+.|+-|+.-+..+++...+..+|+|-+.||+|||+.-|.-.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~ 61 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCST 61 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHH
Confidence 67899999999999999999999999999999998766543
No 282
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.37 Score=61.28 Aligned_cols=157 Identities=12% Similarity=0.079 Sum_probs=90.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEe--chHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhh
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIV--PNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAA 1097 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k-~~~GP~LIVV--P~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~ 1097 (2239)
..+|.-.+|+|||.++.-+..++.... .....+++|+ +-..-.-|+ +..|+-.+.+-++
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv~---------------- 237 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPVK---------------- 237 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcceE----------------
Confidence 457889999999998877776665432 1234555555 222323333 4444432222111
Q ss_pred cCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhh---HHHHHhhcccc--ceEEEecCCCCCCCHHHHHHHHh
Q 000101 1098 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYRC--QRRLLLTGTPLQNDLKELWSLLN 1172 (2239)
Q Consensus 1098 ~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~S---KlskaLk~Lka--~rRLLLTGTPIQNnL~ELwsLLn 1172 (2239)
++.++..+......+ .++++||||++.+...... .+...+..... ...|.|+||--.+.+.+++.-+.
T Consensus 238 -----~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~ 310 (388)
T PRK12723 238 -----AIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS 310 (388)
T ss_pred -----eeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc
Confidence 122334443333333 3689999999999853322 33334443332 45688999988888888887776
Q ss_pred hhcCc-----------ccCChHHHHhhhcCCcccCCCCCCC
Q 000101 1173 LLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNA 1202 (2239)
Q Consensus 1173 FLlP~-----------iF~s~k~F~e~F~kPf~~~g~~~~~ 1202 (2239)
.+.+. -++..-.+...+..|+...+.....
T Consensus 311 ~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~v 351 (388)
T PRK12723 311 PFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIV 351 (388)
T ss_pred CCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCC
Confidence 55332 1344445666677787766554443
No 283
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.33 E-value=0.1 Score=69.34 Aligned_cols=139 Identities=17% Similarity=0.203 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechHHHH-HHHHHHHHHCCCCceE
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNAVLV-NWKSELHKWLPSVSCI 1079 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~--~GP~LIVVP~SLLs-QW~~Ef~KwaPslkvv 1079 (2239)
+.|+.++..++. +.-.+|.-..|+|||.++..++..+...... ...+++++|+.-.. ...+-+..-...+..
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 789999887776 5567899999999999988888877654322 13688889987443 333333332211110
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--------hcccCCceEEEecccccccChhhHHHHHhhccccce
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--------KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR 1151 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--------~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~r 1151 (2239)
...... ...+-..|...+..... .-....+++||||||-.+- ...+...+..++...
T Consensus 223 ----~~~~~~---------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd--~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 223 ----AEALIA---------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD--LPLMAKLLKALPPNT 287 (586)
T ss_pred ----chhhhh---------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC--HHHHHHHHHhcCCCC
Confidence 000000 00111222222221110 1112368999999998874 234555666777788
Q ss_pred EEEecCCCCC
Q 000101 1152 RLLLTGTPLQ 1161 (2239)
Q Consensus 1152 RLLLTGTPIQ 1161 (2239)
||+|.|-|-|
T Consensus 288 rlIlvGD~~Q 297 (586)
T TIGR01447 288 KLILLGDKNQ 297 (586)
T ss_pred EEEEECChhh
Confidence 9999998755
No 284
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=95.22 E-value=0.017 Score=79.09 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=68.5
Q ss_pred hhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHH
Q 000101 1963 LLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLK 2042 (2239)
Q Consensus 1963 ~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k 2042 (2239)
.|...-+-++.+|||.| |..||||+++...|...-|..-+.|..|+.||++|...||++-+-.-..|...-.+.+.+|+
T Consensus 1281 ~f~~Pv~~k~v~dyy~v-i~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1281 PFPTPVNAKEVKDYYRV-ITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLCFEKLK 1359 (1563)
T ss_pred CCCCccchhhccchhhc-cCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHHHHhhc
Confidence 45556788899999999 99999999999999999999999999999999999999999988777777666665555543
No 285
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.19 E-value=0.1 Score=61.65 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=71.4
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC-
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV- 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPsl- 1076 (2239)
+..||+-|.+.+..|++- ..+.|.++-.-||-|||-..+=+++.++. .+ ..=+-+|||..++.+-..-+...+.++
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LA-dg-~~LvrviVpk~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALA-DG-SRLVRVIVPKALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHc-CC-CcEEEEEcCHHHHHHHHHHHHHHHHHHh
Confidence 347999999999999873 45677899999999999777666665553 22 234668889999999877776655432
Q ss_pred ceEEEe----cchh---hH-H---HHHHHHhhcCccEEEEehhHHHH
Q 000101 1077 SCIYYV----GAKD---QR-S---RLFSQVAALKFNVLVTTYEFIMY 1112 (2239)
Q Consensus 1077 kvvvy~----Gskd---~R-k---~l~~~i~~~kfdVVITTYE~L~k 1112 (2239)
.--+|+ -... .. . +++.... ..-.|+|+|++.+..
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~-~~~gill~~PEhilS 143 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECM-RSGGILLATPEHILS 143 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHH-HcCCEEEeChHHHHH
Confidence 112221 1111 11 1 1122222 245699999998754
No 286
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=94.93 E-value=0.0086 Score=79.83 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=68.4
Q ss_pred cCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000101 1972 ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2045 (2239)
Q Consensus 1972 ~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~f 2045 (2239)
..|+||.+ |.+|||+.+|+.+|....|..+.+=+.|+.-||.||..||...-.|+..+..|+++|...+..++
T Consensus 23 ~~~~~~~~-~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 95 (640)
T KOG1474|consen 23 NLPAYYEI-IKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMP 95 (640)
T ss_pred cchhhhcc-cCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhhccccccccc
Confidence 34999999 99999999999999999999999999999999999999999999999999999999987776654
No 287
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.90 E-value=0.14 Score=61.20 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=20.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
.+.||.-+.|+|||..|-++...+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999998777766654
No 288
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.74 E-value=0.17 Score=69.43 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=58.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCCCceEEEecchhh-HHHHHHHHhhcCc
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPSVSCIYYVGAKDQ-RSRLFSQVAALKF 1100 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~Kw-aPslkvvvy~Gskd~-Rk~l~~~i~~~kf 1100 (2239)
||.-.-|+|||..+..|...|....+......=.|+.. ..|..- ..++.++.+.+.... ...+.. +
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC------~~~~~g~~~~~dv~eidaas~~~Vd~iR~-l----- 108 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC------VALAPGGPGSLDVTEIDAASHGGVDDARE-L----- 108 (824)
T ss_pred EEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH------HHHHcCCCCCCcEEEecccccCCHHHHHH-H-----
Confidence 79999999999999988888765332111112234431 111111 122334444332111 011100 0
Q ss_pred cEEEEehhHHHHhhh-hcccCCceEEEecccccccCh-hhHHHHHhhccccceEEEecCC
Q 000101 1101 NVLVTTYEFIMYDRS-KLSKVDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1101 dVVITTYE~L~kD~s-~L~kikWd~VIIDEAHrIKN~-~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
..... .-...+|+++||||+|+|-.. ...+.+.|.......+++|+.|
T Consensus 109 ----------~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 109 ----------RERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred ----------HHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 00000 011247999999999999532 2245566666666666666544
No 289
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.73 E-value=0.13 Score=66.62 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcCCC-C--eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL-N--GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l-n--GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..|...+.++. + -|+..+.|+|||..|..++..+..
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4444444444443332 2 389999999999998888776653
No 290
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.29 E-value=0.15 Score=69.66 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=28.6
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCCC
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
.+|.++||||+|+|.. ....+.++|.......+++|..|-
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 4799999999999942 334556666666677778877553
No 291
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.22 E-value=0.14 Score=68.46 Aligned_cols=141 Identities=20% Similarity=0.253 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHHHHHH-HHHHCCCCce
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVNWKSE-LHKWLPSVSC 1078 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~SLLsQW~~E-f~KwaPslkv 1078 (2239)
+-+.|+.++...+. +.-.||.-..|+|||.++..++..+..... ....+++++|+.-...=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999977765 455789999999999998888887765322 23467788898754332222 3221111100
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--------hhcccCCceEEEecccccccChhhHHHHHhhccccc
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1150 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--------s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~ 1150 (2239)
....+. .+..-..|...+.... ..-....+++||||||-.+- -......+..++..
T Consensus 229 -----~~~~~~---------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll~al~~~ 292 (615)
T PRK10875 229 -----TDEQKK---------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--LPMMARLIDALPPH 292 (615)
T ss_pred -----chhhhh---------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--HHHHHHHHHhcccC
Confidence 000000 0011122222222110 01123467999999998873 34455666778888
Q ss_pred eEEEecCCCCC
Q 000101 1151 RRLLLTGTPLQ 1161 (2239)
Q Consensus 1151 rRLLLTGTPIQ 1161 (2239)
.||+|-|-|-|
T Consensus 293 ~rlIlvGD~~Q 303 (615)
T PRK10875 293 ARVIFLGDRDQ 303 (615)
T ss_pred CEEEEecchhh
Confidence 89999998755
No 292
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.20 E-value=0.14 Score=69.62 Aligned_cols=134 Identities=22% Similarity=0.195 Sum_probs=79.8
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCce
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkv 1078 (2239)
..|.+-|.+++..+.. +.-.+|.-..|+|||.++-+++..+.. .+...++++++|+........+... ..
T Consensus 322 ~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~e~~g----~~- 391 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAKRLGEVTG----LT- 391 (720)
T ss_pred CCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHHHHHHhcC----Cc-
Confidence 4799999999988753 446789999999999877666655443 2222467888898866654443211 00
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCC
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
.....+++. . ..+-. .... .-.....++||||||+.+-. ......+..++...+|+|-|-
T Consensus 392 ------a~Tih~lL~---~-~~~~~------~~~~--~~~~~~~~llIvDEaSMvd~--~~~~~Ll~~~~~~~rlilvGD 451 (720)
T TIGR01448 392 ------ASTIHRLLG---Y-GPDTF------RHNH--LEDPIDCDLLIVDESSMMDT--WLALSLLAALPDHARLLLVGD 451 (720)
T ss_pred ------cccHHHHhh---c-cCCcc------chhh--hhccccCCEEEEeccccCCH--HHHHHHHHhCCCCCEEEEECc
Confidence 000011110 0 00000 0000 00124678999999999842 234555566777789999998
Q ss_pred CCCC
Q 000101 1159 PLQN 1162 (2239)
Q Consensus 1159 PIQN 1162 (2239)
|-|-
T Consensus 452 ~~QL 455 (720)
T TIGR01448 452 TDQL 455 (720)
T ss_pred cccc
Confidence 7653
No 293
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.17 E-value=0.24 Score=66.90 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=29.3
Q ss_pred CCceEEEecccccccChh-hHHHHHhhccccceEEEecCCC
Q 000101 1120 VDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN~~-SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
-+|+++||||+|.|.+.. ..+.++|.......+++|+.|-
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 478999999999996432 3456666666667788888774
No 294
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.71 E-value=0.07 Score=68.85 Aligned_cols=103 Identities=22% Similarity=0.253 Sum_probs=58.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHH-----HHCCCCceEEEecchhhHHHH--HHHHhh
Q 000101 1026 DEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELH-----KWLPSVSCIYYVGAKDQRSRL--FSQVAA 1097 (2239)
Q Consensus 1026 DEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP-~SLLsQW~~Ef~-----KwaPslkvvvy~Gskd~Rk~l--~~~i~~ 1097 (2239)
..||+|||+++.++|++++. ..+..+|+.|- ++++..-..-|. +++- -.++.|.+..-..+.. +.. ..
T Consensus 4 matgsgkt~~ma~lil~~y~--kgyr~flffvnq~nilekt~~nftd~~s~kylf-~e~i~~~d~~i~ikkvn~fse-hn 79 (812)
T COG3421 4 MATGSGKTLVMAGLILECYK--KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLF-SENININDENIEIKKVNNFSE-HN 79 (812)
T ss_pred cccCCChhhHHHHHHHHHHH--hchhhEEEEecchhHHHHHHhhcccchhhhHhh-hhhhhcCCceeeeeeecccCc-cC
Confidence 57999999999999999874 45677888874 556654333221 1110 1112222221111110 000 22
Q ss_pred cCccEEEEehhHHHHhhh----------hcccCCceEEEecccccc
Q 000101 1098 LKFNVLVTTYEFIMYDRS----------KLSKVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1098 ~kfdVVITTYE~L~kD~s----------~L~kikWd~VIIDEAHrI 1133 (2239)
....|++||.+.+..+.. .|.. .--++|-||||++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~-~klvfl~deahhl 124 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKD-QKLVFLADEAHHL 124 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhh-CceEEEechhhhh
Confidence 355789999888876521 1222 2235678999999
No 295
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.51 E-value=0.2 Score=62.23 Aligned_cols=146 Identities=23% Similarity=0.276 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH---------------HHHH
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV---------------NWKS 1067 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs---------------QW~~ 1067 (2239)
-||.-++..|+. ..-.=..|.-.-|+|||+.|+|.-++-...++.+..++|--|.--+. -|..
T Consensus 231 ~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq 308 (436)
T COG1875 231 AEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQ 308 (436)
T ss_pred HHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHH
Confidence 489888887764 11122456778899999999887666555566666655544543332 2333
Q ss_pred HHHHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc
Q 000101 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY 1147 (2239)
Q Consensus 1068 Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L 1147 (2239)
-|.. ++.++.-..... -..+...+......|.-.||= +-+ .+.-.+||||||+++-- ..+-..|.+.
T Consensus 309 ~i~D---nLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~I---RGR----Sl~~~FiIIDEaQNLTp--heikTiltR~ 375 (436)
T COG1875 309 AIFD---NLEVLFSPNEPG-DRALEEILSRGRIEVEALTYI---RGR----SLPDSFIIIDEAQNLTP--HELKTILTRA 375 (436)
T ss_pred HHHh---HHHHHhcccccc-hHHHHHHHhccceeeeeeeee---ccc----ccccceEEEehhhccCH--HHHHHHHHhc
Confidence 2211 111111000000 001111122223333333331 111 23456899999999842 2333445566
Q ss_pred ccceEEEecCCCCCCC
Q 000101 1148 RCQRRLLLTGTPLQND 1163 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNn 1163 (2239)
-..-++.|||-|.|-+
T Consensus 376 G~GsKIVl~gd~aQiD 391 (436)
T COG1875 376 GEGSKIVLTGDPAQID 391 (436)
T ss_pred cCCCEEEEcCCHHHcC
Confidence 6677999999986543
No 296
>PLN03025 replication factor C subunit; Provisional
Probab=93.37 E-value=0.62 Score=57.42 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCCCCCCCHHHHH
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQNDLKELW 1168 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELw 1168 (2239)
..|.+|||||+|.|-. ....+.+.+..+....+++|+.+....-+..|-
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 3689999999999943 333455555555566678887775444333333
No 297
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.28 E-value=0.15 Score=51.95 Aligned_cols=42 Identities=24% Similarity=0.104 Sum_probs=28.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQ 1064 (2239)
.+.+|.-.+|+|||..+..++..+... ...++++.+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~---~~~~~~~~~~~~~~~ 44 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP---GGGVIYIDGEDILEE 44 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---CCCEEEECCEEcccc
Confidence 456889999999998887777654321 125677776554443
No 298
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=93.28 E-value=0.038 Score=58.89 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=34.2
Q ss_pred cccccc-CCCCc--ccccchhhhhcCCCCcccccchhhccCcc
Q 000101 1730 RLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEI 1769 (2239)
Q Consensus 1730 ~l~~~f-~lps~--~~~~~yya~i~~P~dl~~~i~~~leeg~y 1769 (2239)
..+.+| ..++. ...||||.+||+||||++ |..+|.++.+
T Consensus 19 ~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~t-i~~kl~~~~~ 60 (114)
T cd05494 19 EDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGT-KVNNIVETGA 60 (114)
T ss_pred CCCCCcCCCCCchhcCCCChhhhcCCCCChHH-HHHHHHcccc
Confidence 456778 66677 889999999999999999 9999999987
No 299
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.97 E-value=0.64 Score=62.48 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=27.4
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
.+|.++||||+|+|.. ....+.++|.......+++|+.|
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 4789999999999953 33345566666566667777655
No 300
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=92.94 E-value=0.21 Score=68.86 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=77.0
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-----HHHHHHHHHHCCCCceEEEecchhhHH
Q 000101 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-----VNWKSELHKWLPSVSCIYYVGAKDQRS 1089 (2239)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL-----sQW~~Ef~KwaPslkvvvy~Gskd~Rk 1089 (2239)
+|+.+.+.+++...|+|||++|=..+.. ....+.++-|+|...+ .-|...|.+. -++.++-..|....-.
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDL 1229 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccch
Confidence 5667788999999999999876443332 4456788999998754 3488888776 4566666666544322
Q ss_pred HHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChh
Q 000101 1090 RLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1137 (2239)
Q Consensus 1090 ~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~ 1137 (2239)
. ....-+|+|+|++.+-... .--..++.|+||.|.+....
T Consensus 1230 k-----l~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1230 K-----LLQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred H-----HhhhcceEEechhHHHHHh---hhhhcceEeeehhhhhcccC
Confidence 2 2336689999999875442 22256899999999997543
No 301
>PRK04296 thymidine kinase; Provisional
Probab=92.93 E-value=0.22 Score=57.11 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=24.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
.++.-+||.|||..++.++..+.. ....++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEec
Confidence 367889999999888888776653 2346677755
No 302
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.90 E-value=0.45 Score=63.62 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
||...-|+|||..+..+...|..
T Consensus 42 LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 42 LFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 88999999999999888877764
No 303
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.85 E-value=0.77 Score=51.55 Aligned_cols=134 Identities=18% Similarity=0.191 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCCCceEE
Q 000101 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPSVSCIY 1080 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~Kw-aPslkvvv 1080 (2239)
|.+.++.+..++.++ .+. |+..+.|+||+-.+..++..++....... .|-.. .....+..- .|++ .+
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~c---~~c~~~~~~~~~d~--~~ 72 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGEC---RSCRRIEEGNHPDF--II 72 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SSS---HHHHHHHTT-CTTE--EE
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC---HHHHHHHhccCcce--EE
Confidence 566677777766654 233 88899999999999999988875433322 11111 111122211 1222 22
Q ss_pred EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhc--c--cCCceEEEeccccccc-ChhhHHHHHhhccccceEEEe
Q 000101 1081 YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKL--S--KVDWKYIIIDEAQRMK-DRESVLARDLDRYRCQRRLLL 1155 (2239)
Q Consensus 1081 y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L--~--kikWd~VIIDEAHrIK-N~~SKlskaLk~Lka~rRLLL 1155 (2239)
+......+ .+ .-+.+..-...+ . ...|+++||||||+|. +....+.+.|.......+++|
T Consensus 73 ~~~~~~~~------------~i---~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 73 IKPDKKKK------------SI---KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp EETTTSSS------------SB---SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred Eecccccc------------hh---hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 22111100 00 001111111111 1 1369999999999994 355567788888888888888
Q ss_pred cCCCCCC
Q 000101 1156 TGTPLQN 1162 (2239)
Q Consensus 1156 TGTPIQN 1162 (2239)
+.+=..+
T Consensus 138 ~t~~~~~ 144 (162)
T PF13177_consen 138 ITNNPSK 144 (162)
T ss_dssp EES-GGG
T ss_pred EECChHH
Confidence 7764333
No 304
>CHL00181 cbbX CbbX; Provisional
Probab=92.74 E-value=0.34 Score=59.22 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=29.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVN 1064 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~SLLsQ 1064 (2239)
+.+.||.-+.|+|||..|-++...+..... ..++++.|....++..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~ 105 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQ 105 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHH
Confidence 445688999999999999888776654221 2245444444444433
No 305
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.63 E-value=0.3 Score=59.51 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=27.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEechHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPNAV 1061 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~-~GP~LIVVP~SL 1061 (2239)
+.+.+|..+.|+|||..|.++...+...... .++++.|....+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 4466888999999999998777766542211 235555544333
No 306
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=92.56 E-value=0.47 Score=64.58 Aligned_cols=146 Identities=21% Similarity=0.186 Sum_probs=85.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
.|-.-|+.++...+......+ |+.. .|+|||-+...+|..|... .+.+|+.+=++ .+.|..-.+..+--.
T Consensus 669 ~LN~dQr~A~~k~L~aedy~L--I~GM-PGTGKTTtI~~LIkiL~~~---gkkVLLtsyThsAVDNILiKL~~~~i~--- 739 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYAL--ILGM-PGTGKTTTISLLIKILVAL---GKKVLLTSYTHSAVDNILIKLKGFGIY--- 739 (1100)
T ss_pred hcCHHHHHHHHHHHhccchhe--eecC-CCCCchhhHHHHHHHHHHc---CCeEEEEehhhHHHHHHHHHHhccCcc---
Confidence 567789999887775433322 5554 7999998888888777652 34688888654 788887777665321
Q ss_pred EEEecchhhHHHHHHH----------------HhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHH
Q 000101 1079 IYYVGAKDQRSRLFSQ----------------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~----------------i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
++-.|........... .......||.||---+. ...|....|||+|||||--+.-+-+
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~lP~~---- 813 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILLPLC---- 813 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEccccccccchh----
Confidence 2223332221111111 11234456666643332 3456677899999999987642221
Q ss_pred HhhccccceEEEecCCCCC
Q 000101 1143 DLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQ 1161 (2239)
|--+....+..|-|-+.|
T Consensus 814 -LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 814 -LGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred -hhhhhhcceEEEeccccc
Confidence 222334456666666533
No 307
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=92.17 E-value=0.2 Score=54.60 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=60.6
Q ss_pred cCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q 000101 1981 GNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDT 2048 (2239)
Q Consensus 1981 I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~ 2048 (2239)
-..|.||.-+.+|++.+.|.+|.+|..||=.++.-++.=-+...|+.+.-..+.-+|+.+|..+||-.
T Consensus 56 ~~~p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf 123 (131)
T cd05493 56 ELPPLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWF 123 (131)
T ss_pred CCCcccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcccc
Confidence 34589999999999999999999999999999988887777777888887888999999999999943
No 308
>PRK06526 transposase; Provisional
Probab=92.04 E-value=0.43 Score=57.47 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
....|+. .+.|.+|....|+|||..+.++...+..
T Consensus 90 ~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 90 GTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred hcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 3445664 3677899999999999999998877764
No 309
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.95 E-value=5.3 Score=54.99 Aligned_cols=27 Identities=37% Similarity=0.421 Sum_probs=21.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
..|.||.-+.|+|||..+-++...+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999998777766654
No 310
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.79 E-value=0.8 Score=61.08 Aligned_cols=132 Identities=14% Similarity=0.055 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH-HCCCCceEE
Q 000101 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK-WLPSVSCIY 1080 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~K-waPslkvvv 1080 (2239)
|...+..|...+..+ .+. |+....|+|||..+.++...+....+..+--.-.|+. +..|.. ......++.
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~------C~~i~~~~~~~~dvie 91 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES------CVALAPNGPGSIDVVE 91 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH------HHHhhcccCCCceEEE
Confidence 455555555544433 233 7899999999999988887776422211111222222 222221 112334444
Q ss_pred Eecchhh-HHHHHHHHhhcCccEEEEehhHHHHhhhhc-ccCCceEEEecccccccCh-hhHHHHHhhccccceEEEecC
Q 000101 1081 YVGAKDQ-RSRLFSQVAALKFNVLVTTYEFIMYDRSKL-SKVDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTG 1157 (2239)
Q Consensus 1081 y~Gskd~-Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L-~kikWd~VIIDEAHrIKN~-~SKlskaLk~Lka~rRLLLTG 1157 (2239)
+.+.... ...+. . +....... ...++.++||||+|.|... ...+.+.|.......+++|..
T Consensus 92 idaas~~gvd~iR-e---------------l~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 92 LDAASHGGVDDTR-E---------------LRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred eccccccCHHHHH-H---------------HHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 4332211 11110 0 11111111 1236899999999999542 223445555555555666544
Q ss_pred C
Q 000101 1158 T 1158 (2239)
Q Consensus 1158 T 1158 (2239)
|
T Consensus 156 t 156 (584)
T PRK14952 156 T 156 (584)
T ss_pred C
Confidence 5
No 311
>PF13892 DBINO: DNA-binding domain
Probab=91.73 E-value=3.6 Score=45.68 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHhccCCCcchHHHHHHHHHhHhhhHHHHHHhhhhh
Q 000101 839 NRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKI 916 (2239)
Q Consensus 839 ~r~v~~~h~~~~~~~~kr~e~~~~~r~~~lk~~d~e~y~~ll~~~k~~~~~d~~~r~~~l~~lL~qte~~l~~l~~~v 916 (2239)
.|.+..|-.+.++++.....+..++.++..+.+++.. + . +.+..+|.+||+|||.|.|+++.++
T Consensus 70 ~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~~--e----~--------~rq~~rl~fLl~QTElfsHF~~~k~ 133 (139)
T PF13892_consen 70 MREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEKR--E----A--------KRQQRRLNFLLTQTELFSHFMQNKA 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH--H----H--------HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3556666666666655444444556666655544321 1 1 1222458899999999999998654
No 312
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.66 E-value=1.5 Score=50.66 Aligned_cols=91 Identities=24% Similarity=0.261 Sum_probs=54.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhc
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
..+.+|.-+.|+|||..+.++..++... +..++.+....+..|..++..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~--------------------------- 86 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEER----GKSAIYLPLAELAQADPEVLE--------------------------- 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEeHHHHHHhHHHHHh---------------------------
Confidence 4456899999999999988877665531 223455555544444311110
Q ss_pred CccEEEEehhHHHHhhhhcccCCceEEEecccccccCh---hhHHHHHhhcc-ccceEEEecCCC
Q 000101 1099 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGTP 1159 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~---~SKlskaLk~L-ka~rRLLLTGTP 1159 (2239)
.+. ..++|||||+|.+... ...+...+..+ ....++++|+|.
T Consensus 87 -----------------~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 87 -----------------GLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred -----------------hcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 011 2368999999998643 33445444443 233578888774
No 313
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=91.62 E-value=0.62 Score=56.98 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1006 IVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1006 leGLqwLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Li 1044 (2239)
...+.++.....++. +.+|.-+.|+|||..+.++..++.
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 334555555444444 568999999999999988887765
No 314
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.49 E-value=0.53 Score=59.19 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|..++..+...+..+. .-||.-+.|+|||..+..++..++.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 5666777777776554 2488999999999999988887765
No 315
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=91.24 E-value=0.041 Score=78.38 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=47.1
Q ss_pred cccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000101 1732 TQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1781 (2239)
Q Consensus 1732 ~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1781 (2239)
+.|| .+++.+..|+||.||++||||++ |..+|.-|.|.+..++.-|+.+
T Consensus 1319 awPFlepVn~~~vp~Y~~IIk~Pmdl~t-ir~k~~~~~Y~~~eef~~Di~l 1368 (1404)
T KOG1245|consen 1319 AWPFLEPVNPKEVPDYYDIIKKPMDLST-IREKLSKGIYPSPEEFATDIEL 1368 (1404)
T ss_pred cchhhccCChhhcccHHHHhcChhHHHH-HHHHHhcccCCCHHHHHHHHHH
Confidence 5788 99999999999999999999999 9999999999999999999997
No 316
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.07 E-value=0.27 Score=65.10 Aligned_cols=164 Identities=15% Similarity=0.213 Sum_probs=100.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHH-HHHH---CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSE-LHKW---LP 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~E-f~Kw---aP 1074 (2239)
...|||.+-++-|..-. -....+.-..-+|||...+.+|.|.+. ...+|+|+|.|+. ++..|..+ |... .|
T Consensus 16 ~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~--~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp 91 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSID--QDPGPMLYVQPTDDAAKDFSKERLDPMIRASP 91 (557)
T ss_pred CCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEE--eCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCH
Confidence 68899999887766422 234467777889999999888888875 3457999999987 66777754 4333 23
Q ss_pred CCceEEEec-chhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEeccccccc----Chhh---HHHHHhhc
Q 000101 1075 SVSCIYYVG-AKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK----DRES---VLARDLDR 1146 (2239)
Q Consensus 1075 slkvvvy~G-skd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIK----N~~S---KlskaLk~ 1146 (2239)
.+.-.+... ..+....+.. ....+-.+.++.... ...|.....++||+||.+++- +... ...+....
T Consensus 92 ~l~~~~~~~~~~~~~~t~~~-k~f~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~t 166 (557)
T PF05876_consen 92 VLRRKLSPSKSRDSGNTILY-KRFPGGFLYLVGANS----PSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKT 166 (557)
T ss_pred HHHHHhCchhhcccCCchhh-eecCCCEEEEEeCCC----CcccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhh
Confidence 333222220 0111111110 111122244444332 345777889999999999982 2223 33334445
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHh
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLN 1172 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLn 1172 (2239)
|.....+++..||.......++.++.
T Consensus 167 f~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 167 FGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred hccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 55677899999998776666665544
No 317
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.91 E-value=2.4 Score=57.51 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=28.4
Q ss_pred CceEEEecccccccCh-hhHHHHHhhccccceEEEecCCCCCCCHHH
Q 000101 1121 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQNDLKE 1166 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~-~SKlskaLk~Lka~rRLLLTGTPIQNnL~E 1166 (2239)
++++|||||+|.|... ...+.+.|.......+++|+.|-...-+.-
T Consensus 119 k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~T 165 (709)
T PRK08691 119 KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVT 165 (709)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchH
Confidence 6889999999998531 223455555545555677766644433333
No 318
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.62 E-value=3.1 Score=53.78 Aligned_cols=153 Identities=18% Similarity=0.146 Sum_probs=80.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhc
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV--P~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
..+|+-.+|+|||.+++.++.++....+. ..+++|. |-.... ...+..|+..+.+-++
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g-~~V~li~~D~~r~~a--~eqL~~~a~~~~vp~~----------------- 282 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGK-KKVALITLDTYRIGA--VEQLKTYAKIMGIPVE----------------- 282 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEECCccHHHH--HHHHHHHHHHhCCceE-----------------
Confidence 44677889999999988887776511222 3455554 221100 1223333311111111
Q ss_pred CccEEEEehhHHHHhhhhcccCCceEEEecccccccChhh---HHHHHhhc--cccceEEEecCCCCCCCHHHHHHHHhh
Q 000101 1099 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDR--YRCQRRLLLTGTPLQNDLKELWSLLNL 1173 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~S---KlskaLk~--Lka~rRLLLTGTPIQNnL~ELwsLLnF 1173 (2239)
++.+...+......+. .+++||||.+-+...... .+...+.. ......|+|++|.-.+.+.+++..+..
T Consensus 283 ----~~~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~ 356 (424)
T PRK05703 283 ----VVYDPKELAKALEQLR--DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSR 356 (424)
T ss_pred ----ccCCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCC
Confidence 1122222222222222 589999999876533221 22233331 233457889999988889998888887
Q ss_pred hcCc-c----------cCChHHHHhhhcCCcccCCCC
Q 000101 1174 LLPE-V----------FDNRKAFHDWFSQPFQKEGPT 1199 (2239)
Q Consensus 1174 LlP~-i----------F~s~k~F~e~F~kPf~~~g~~ 1199 (2239)
+.+. + ++..-.+......|+...+..
T Consensus 357 ~~~~~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~G 393 (424)
T PRK05703 357 LPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNG 393 (424)
T ss_pred CCCCEEEEecccccccccHHHHHHHHHCCCEEEEeCC
Confidence 6552 1 233334444455666654433
No 319
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.46 E-value=1.9 Score=52.66 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=26.6
Q ss_pred CceEEEecccccccCh--hhHHHHHhhccccceEEEecCCCC
Q 000101 1121 DWKYIIIDEAQRMKDR--ESVLARDLDRYRCQRRLLLTGTPL 1160 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~--~SKlskaLk~Lka~rRLLLTGTPI 1160 (2239)
..++|||||+|++... ...+...+..+....++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 4679999999998322 233444455566677888887643
No 320
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=90.44 E-value=1.4 Score=48.78 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCc--CceEEEcCCCC
Q 000101 1378 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--ADTVIIYDPDP 1425 (2239)
Q Consensus 1378 s~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqa--ADtVIifDppW 1425 (2239)
...+...+++.|..... ..+|+++....+|||++. +..||+.-.|+
T Consensus 32 ~~~~~~~~l~~f~~~~~--~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 32 DGKETGKLLEKYVEACE--NAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred ChhHHHHHHHHHHHcCC--CEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 34467889999986322 147888877999999996 78899988775
No 321
>PRK08181 transposase; Validated
Probab=90.34 E-value=1.8 Score=52.71 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
+..-|...+.++......+.|.+|.-..|+|||-.+.++...+..
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 445666666554333445778899999999999999988877764
No 322
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.28 E-value=1.7 Score=58.29 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=27.6
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCCCCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
++++|||||+|.|.. ....+.+.|.......+++|+.|-+.
T Consensus 132 ~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 132 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred CcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 688999999999953 23345556666666667777655433
No 323
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.11 E-value=1.3 Score=58.44 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=26.8
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
.|.++||||+|+|.. ....+.+.|...+...+++|++|
T Consensus 117 ~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 117 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC
Confidence 689999999999953 22345566666666667777665
No 324
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.04 E-value=1 Score=56.17 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=34.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCe-EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnG-ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
.++|+|....+.++.. .+-.+. |+..+.|+|||..|..+...+..
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 4688888888888764 222333 67899999999999999988875
No 325
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.99 E-value=1.4 Score=59.37 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=26.3
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
.+|+++||||+|+|-. ....+.+.|.......+++|+.|
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 3689999999999842 33345555555555556777665
No 326
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.62 E-value=4.5 Score=51.97 Aligned_cols=154 Identities=13% Similarity=0.137 Sum_probs=85.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec--h--HHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhh
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP--N--AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAA 1097 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP--~--SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~ 1097 (2239)
.+|+-.+|+|||..+..+...+.. ....+++|.- - ..+.||.. |+...
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~---~GkkVglI~aDt~RiaAvEQLk~----yae~l--------------------- 295 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQD----YVKTI--------------------- 295 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEEecCCcchHHHHHHHH----Hhhhc---------------------
Confidence 467888999999988888776653 2234555553 2 25566653 32111
Q ss_pred cCccEE-EEehhHHHHhhhhccc-CCceEEEecccccccChhh---HHHHHhhccccc-eEEEecCCCCCCCHHHHHHHH
Q 000101 1098 LKFNVL-VTTYEFIMYDRSKLSK-VDWKYIIIDEAQRMKDRES---VLARDLDRYRCQ-RRLLLTGTPLQNDLKELWSLL 1171 (2239)
Q Consensus 1098 ~kfdVV-ITTYE~L~kD~s~L~k-ikWd~VIIDEAHrIKN~~S---KlskaLk~Lka~-rRLLLTGTPIQNnL~ELwsLL 1171 (2239)
++.++ +.+...+......+.. .++++||||-+=+..+... .+.+.+...... ..|.|++|--.+.+.++...|
T Consensus 296 -gipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 296 -GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred -CCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 22222 2233444433333432 3689999998877543322 233333322233 345578887777777777777
Q ss_pred hhhcCc-----------ccCChHHHHhhhcCCcccCCCCCCCCh
Q 000101 1172 NLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNADD 1204 (2239)
Q Consensus 1172 nFLlP~-----------iF~s~k~F~e~F~kPf~~~g~~~~~e~ 1204 (2239)
+.+... .+|..-.+...+..|+...+......+
T Consensus 375 ~~~~idglI~TKLDET~k~G~iLni~~~~~lPIsyit~GQ~VPe 418 (436)
T PRK11889 375 KDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKK 418 (436)
T ss_pred cCCCCCEEEEEcccCCCCccHHHHHHHHHCcCEEEEeCCCCCCc
Confidence 665332 134444566667788776655444433
No 327
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.61 E-value=2.2 Score=51.28 Aligned_cols=33 Identities=27% Similarity=0.207 Sum_probs=25.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEE
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLII 1056 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIV 1056 (2239)
+.+|....|+|||..+.+++.++... ...+++|
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~i 133 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLR---GKSVLII 133 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEE
Confidence 45899999999999999999888752 2345555
No 328
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.56 E-value=1.3 Score=58.39 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=27.9
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCCCCC
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
-+|+++||||+|.|-. ....+.+.|.......+++|..|-..
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~ 160 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChH
Confidence 4789999999999953 23345566666555666666555333
No 329
>PRK08116 hypothetical protein; Validated
Probab=89.53 E-value=3.1 Score=50.64 Aligned_cols=47 Identities=23% Similarity=0.213 Sum_probs=32.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~E 1068 (2239)
+.+.+|.-++|+|||..+.+++.++... ..+++++.-..++..+...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~~i~~~ 160 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLNRIKST 160 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHHHHH
Confidence 3456899999999999999998888753 2455555544455544433
No 330
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.48 E-value=1.8 Score=56.48 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=19.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Li 1044 (2239)
-||..+.|+|||..|-++...+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 38999999999988887776654
No 331
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.30 E-value=1.3 Score=59.43 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..|...+.++. +. ||...-|+|||..+.++...|..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5555555555554432 33 88999999999999888877754
No 332
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=89.08 E-value=1.4 Score=48.86 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCccEEEEeccc--cccccCCCc--CceEEEcCCCC
Q 000101 1381 DRESAIVDFNSHDSDCFIFLLSIRA--AGRGLNLQS--ADTVIIYDPDP 1425 (2239)
Q Consensus 1381 eRqeiL~~FNs~ds~~~VfLLSTrA--GGeGLNLqa--ADtVIifDppW 1425 (2239)
+..++++.|+........+|+++.- ..||||++. +..||+.-.|+
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4578999998632211246666665 899999996 78999988885
No 333
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.91 E-value=2.3 Score=56.09 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..|...+..+. +. |+.-+.|+|||..+.+++..+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4444555544444332 23 89999999999999888877764
No 334
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=88.89 E-value=2 Score=53.47 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=79.7
Q ss_pred CChHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPsl 1076 (2239)
.++|+|....+.+...+..+. + -|+....|+||+..|.++...++........ .|+.. +|.. ..--|++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~c---~~~~--~g~HPD~ 75 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRTR---QLIA--AGTHPDL 75 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchHH---HHHh--cCCCCCE
Confidence 589999999998888765442 2 3788999999999999999888753211111 12111 1110 0111443
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcc----cCCceEEEecccccccC-hhhHHHHHhhccccce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~r 1151 (2239)
.++...-.....+ ..-. ...+.+......+. .-.++++|||+|++|.. ....+-++|..-....
T Consensus 76 ~~i~~~p~~~~~k--------~~~~---I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~ 144 (319)
T PRK08769 76 QLVSFIPNRTGDK--------LRTE---IVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGR 144 (319)
T ss_pred EEEecCCCccccc--------cccc---ccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCC
Confidence 3331000000000 0000 11122221111111 12689999999999943 3445677777766666
Q ss_pred EEEecCCCCCCCHHHHHH
Q 000101 1152 RLLLTGTPLQNDLKELWS 1169 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELws 1169 (2239)
.++|++.-...-+.-|-+
T Consensus 145 ~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 145 YLWLISAQPARLPATIRS 162 (319)
T ss_pred eEEEEECChhhCchHHHh
Confidence 777766543333334433
No 335
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.83 E-value=3.3 Score=55.52 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=58.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCccE
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNV 1102 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdV 1102 (2239)
|+.-+-|+|||..+.++..++....+..+...-.|+. +.+|.. .....++.+.|...........
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~------c~~i~~-g~~~d~~eid~~s~~~v~~ir~-------- 106 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP------CVEITE-GRSVDVFEIDGASNTGVDDIRE-------- 106 (576)
T ss_pred EEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH------HHHHhc-CCCCCeeeeeccCccCHHHHHH--------
Confidence 7899999999999988887776432211111111221 222222 1233444444432211000000
Q ss_pred EEEehhHHHHhhhhc-ccCCceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1103 LVTTYEFIMYDRSKL-SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1103 VITTYE~L~kD~s~L-~kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
+....... ...+|.++||||+|.|-. ....+.+.|.......+++|+.|
T Consensus 107 -------l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 107 -------LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred -------HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 01111111 123689999999999843 33356666666666666666555
No 336
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.70 E-value=2.5 Score=52.54 Aligned_cols=44 Identities=30% Similarity=0.244 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHh-hcC--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWMLSL-YNN--KLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1002 RPYQleGLqwLlsL-~~n--~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|+.|++.|...+.- ... ..+.+|.-+.|+|||..+-.++..+.+
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 77777776555443 222 245688999999999998888877654
No 337
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=88.56 E-value=2.7 Score=50.74 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~ 1070 (2239)
+.-.++..+.-++..++.+.|.+|.-..|+|||..++|+...+. .++ .+++++.=..++.++...+.
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHHh
Confidence 33445555555555566788889999999999999999998888 332 35666665667776665553
No 338
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.53 E-value=3.2 Score=54.58 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=26.3
Q ss_pred CceEEEecccccccCh-hhHHHHHhhccccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~-~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
++.++||||+|.+... ...+.+.|......-+++|+.|-
T Consensus 116 ~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 6899999999999542 23455555555555667776663
No 339
>PHA02533 17 large terminase protein; Provisional
Probab=88.42 E-value=3.1 Score=55.29 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=73.9
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHH---HCC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHK---WLP 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~K---waP 1074 (2239)
..|.|+|...+.+|.. ... .++.-.=..|||..+.++++++.-... ...+++++|..- ...-.+.+.. -.|
T Consensus 58 f~L~p~Q~~i~~~~~~---~R~-~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK---NRF-NACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHhc---CeE-EEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 4799999998887632 222 355556789999998877766554333 346788888442 1111123322 223
Q ss_pred CCce-EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhh-cccc--c
Q 000101 1075 SVSC-IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRC--Q 1150 (2239)
Q Consensus 1075 slkv-vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk-~Lka--~ 1150 (2239)
.+.. .+...+. . .+. + ..+..|.+.|-+ ..........++||||+|.+++.. .++..+. .+.. .
T Consensus 133 ~l~~~~i~~~~~-~--~I~--l-~NGS~I~~lss~-----~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~lasg~~ 200 (534)
T PHA02533 133 DFLQPGIVEWNK-G--SIE--L-ENGSKIGAYASS-----PDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISSGRS 200 (534)
T ss_pred HHhhcceeecCc-c--EEE--e-CCCCEEEEEeCC-----CCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHcCCC
Confidence 2110 0000000 0 000 0 112222222211 223445577899999999998753 3333332 2222 2
Q ss_pred eEEEecCCCC
Q 000101 1151 RRLLLTGTPL 1160 (2239)
Q Consensus 1151 rRLLLTGTPI 1160 (2239)
.++++..||-
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 4677777883
No 340
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=88.27 E-value=4.9 Score=52.18 Aligned_cols=114 Identities=21% Similarity=0.227 Sum_probs=86.9
Q ss_pred cHHHHHH-HHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000101 1327 GKLWILD-RILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1403 (2239)
Q Consensus 1327 GKLelLd-rIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLST 1403 (2239)
.++.... .+|+.+. ....++|||...=--.-.|..+|+..++.|+.++--++..+-.++-..|.. +...++|+|-
T Consensus 281 ~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~--G~~~iLL~TE 358 (442)
T PF06862_consen 281 ARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH--GRKPILLYTE 358 (442)
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc--CCceEEEEEh
Confidence 3555544 4777777 345689999765555555889999999999999999999999999999996 4566777775
Q ss_pred cccc-cccCCCcCceEEEcCCCCCcchHHHhhhhhcccCC
Q 000101 1404 RAAG-RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1442 (2239)
Q Consensus 1404 rAGG-eGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQ 1442 (2239)
|+-= +=..|..+.+||+|.+|-+|.-|.--+.-...-.+
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~ 398 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSG 398 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhccccc
Confidence 5432 23457789999999999999999988866655443
No 341
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.01 E-value=1.9 Score=57.21 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..+...+..+. + -|+..+.|+|||..+..++.++..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444444444444332 2 378999999999999888877753
No 342
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.95 E-value=3.3 Score=49.16 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHH
Q 000101 1003 DYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~l-nGILADEMGLGKTIQAIALIa 1041 (2239)
+.+..++..+......+. ..+|.-+.|+|||..+-.++.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344556666655444433 357899999999977765543
No 343
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=87.83 E-value=3.1 Score=57.40 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=34.8
Q ss_pred CCccccCCCChHHHHHHHHHHHH-hhc-CCC-CeE-EEcCCCchHHHHHHHHHHHHHH
Q 000101 992 QPSMLRAGTLRDYQIVGLQWMLS-LYN-NKL-NGI-LADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLls-L~~-n~l-nGI-LADEMGLGKTIQAIALIa~Lie 1045 (2239)
+|..|. =|+-|+.-|..++. .+. .+. ++| |.-.+|+|||.++-.++..|.+
T Consensus 753 VPD~LP---hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 753 VPKYLP---CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CCCcCC---ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455443 47888887765554 332 223 333 8999999999999888877754
No 344
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=87.79 E-value=2.5 Score=53.54 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLMEF 1046 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lie~ 1046 (2239)
|..+...+...+..+ .+ -|+.-.-|+|||..+.++..+++..
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 566666666666543 22 3789999999999999999998853
No 345
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.70 E-value=2.6 Score=55.89 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=25.8
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
.+|.++||||+|+|.. ....+.+.|.......+++|..|
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~ 157 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 3689999999999953 22345566666555556666544
No 346
>PF13173 AAA_14: AAA domain
Probab=87.21 E-value=2.9 Score=44.82 Aligned_cols=38 Identities=37% Similarity=0.459 Sum_probs=27.1
Q ss_pred CceEEEecccccccChhhHHHHHhhccccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
+-.+|||||+|++.+....+...+... ....+++||.-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccc
Confidence 567899999999986555444444433 45689999984
No 347
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.07 E-value=3.4 Score=49.09 Aligned_cols=25 Identities=24% Similarity=0.053 Sum_probs=19.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
.+.+|.-+.|+|||-.+.++..++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3458999999999988777666555
No 348
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=87.04 E-value=3.2 Score=54.82 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..+...+.++ ...||..+.|+|||..|-.+...+..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444555554433333 34689999999999999888777654
No 349
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=87.02 E-value=2.1 Score=49.83 Aligned_cols=132 Identities=21% Similarity=0.260 Sum_probs=66.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCccE
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNV 1102 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdV 1102 (2239)
+|+-.+|.|||-++.-+.+++... ...+.+|+--.--.--.++++.|+..+.+-++.-.....
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~-------------- 67 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD-------------- 67 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC--------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh--------------
Confidence 678899999999998888887653 345666663221111223344443223333332111000
Q ss_pred EEEehhHHHHhhhhcccCCceEEEecccccccChhh---HHHHHhhcc-ccceEEEecCCCCCCCHHHHHHHHhhh
Q 000101 1103 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRY-RCQRRLLLTGTPLQNDLKELWSLLNLL 1174 (2239)
Q Consensus 1103 VITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~S---KlskaLk~L-ka~rRLLLTGTPIQNnL~ELwsLLnFL 1174 (2239)
.-+.+......+...++++|+||-+-+..+... .+...+... .....|.|++|--+..+..+......+
T Consensus 68 ---~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 68 ---PAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp ---HHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred ---hHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 000111222334445788999998877644322 222333333 344567788886665555555544444
No 350
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.96 E-value=4.7 Score=54.35 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
-||..+-|+|||..|..+...+..
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhccc
Confidence 367999999999999888877764
No 351
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.82 E-value=2.3 Score=57.34 Aligned_cols=41 Identities=17% Similarity=0.011 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..|...+..+. .-||..+.|+|||..+.+++..|..
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4445555555554442 2388999999999999999888764
No 352
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.80 E-value=3.5 Score=55.36 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCCC--e-EEEcCCCchHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKLN--G-ILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~ln--G-ILADEMGLGKTIQAIALIa~Li 1044 (2239)
|...+.+|...+.++.- . ||.-+.|+|||..+.+++..+.
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 55566666655554432 2 8899999999999988887765
No 353
>PRK08727 hypothetical protein; Validated
Probab=86.65 E-value=5.4 Score=47.39 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=20.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
.+|..+.|+|||-.+.++...+..
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 589999999999888888777654
No 354
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.56 E-value=3.2 Score=52.43 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Li 1044 (2239)
|...+..+...+..+ .+. ||.-+.|+|||..+-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 555555555544433 234 7999999999988888877664
No 355
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.50 E-value=4 Score=51.97 Aligned_cols=126 Identities=17% Similarity=0.129 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhc
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
+...+|.-.+|+|||.++..+...+....+. ..+.+|+-...-..-.+.+..|+..+.+-++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----------------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVH----------------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceE-----------------
Confidence 4456889999999999998888776543222 3455555322211112233333211111111
Q ss_pred CccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-----ccceEEEecCCCCCCCHHHHHH
Q 000101 1099 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWS 1169 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-----ka~rRLLLTGTPIQNnL~ELws 1169 (2239)
.+.+...+......+ .+.++||||++=+.-... .+...+..+ .....|.|++|--...+.+++.
T Consensus 199 ----~~~~~~~l~~~l~~l--~~~DlVLIDTaG~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 199 ----AVKDGGDLQLALAEL--RNKHMVLIDTIGMSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred ----ecCCcccHHHHHHHh--cCCCEEEEcCCCCCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 111222222222222 246899999997653222 233333322 2345677899976666666543
No 356
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=86.37 E-value=4 Score=56.28 Aligned_cols=125 Identities=17% Similarity=0.115 Sum_probs=71.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCce
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkv 1078 (2239)
..|-+-|..++..++. .+.-.+|....|+|||.++-+++..+. . ....+++++|+.....-..+- . ++.
T Consensus 351 ~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~-~--~g~~V~~~ApTg~Aa~~L~~~---~-g~~- 419 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWE-A--AGYRVIGAALSGKAAEGLQAE---S-GIE- 419 (744)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHH-h--CCCeEEEEeCcHHHHHHHHhc---c-CCc-
Confidence 4789999999988764 123468889999999987766554433 2 234678888987654322211 0 000
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHH--hhhhcccCCceEEEecccccccChhhHHHHHhhc-cccceEEEe
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMY--DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRLLL 1155 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~k--D~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~-Lka~rRLLL 1155 (2239)
-.|-..+.. ..........++||||||-.+-.. .+...+.. .....+|+|
T Consensus 420 -------------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~--~~~~Ll~~~~~~~~kliL 472 (744)
T TIGR02768 420 -------------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR--QMARVLKEAEEAGAKVVL 472 (744)
T ss_pred -------------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCCHH--HHHHHHHHHHhcCCEEEE
Confidence 001111100 001111236789999999988532 23333432 245668999
Q ss_pred cCCCCC
Q 000101 1156 TGTPLQ 1161 (2239)
Q Consensus 1156 TGTPIQ 1161 (2239)
.|-|-|
T Consensus 473 VGD~~Q 478 (744)
T TIGR02768 473 VGDPEQ 478 (744)
T ss_pred ECChHH
Confidence 887543
No 357
>PRK06835 DNA replication protein DnaC; Validated
Probab=86.26 E-value=6.1 Score=49.62 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHhh----cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLY----NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~----~n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
..+.+...++.++.... ..+.+.+|..++|+|||..+.+++..++.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 55666666666544322 24566689999999999999998888875
No 358
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=86.09 E-value=0.82 Score=51.52 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=27.2
Q ss_pred hcCccEEEEehhHHHHhhh--hc--ccCCceEEEecccccccC
Q 000101 1097 ALKFNVLVTTYEFIMYDRS--KL--SKVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1097 ~~kfdVVITTYE~L~kD~s--~L--~kikWd~VIIDEAHrIKN 1135 (2239)
....+|||++|.+|..... .+ ...+-.+|||||||+|-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3467999999999986532 22 223557999999999853
No 359
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.84 E-value=4.4 Score=53.51 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=74.0
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEE
Q 000101 1323 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1401 (2239)
Q Consensus 1323 i~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLL 1401 (2239)
...|||.++...++......|.+|||.+.....+..+.+.|... +..+..+||.++..+|.+...+...++.. |++
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVV 81 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVI 81 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEE
Confidence 35689999998888888888999999999999888888888654 67888999999999998887777654433 566
Q ss_pred eccccccccCCCcCceEEEcCC
Q 000101 1402 SIRAAGRGLNLQSADTVIIYDP 1423 (2239)
Q Consensus 1402 STrAGGeGLNLqaADtVIifDp 1423 (2239)
.|+.+-. +-+...+.||+-+-
T Consensus 82 GTrsalf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 82 GTRSALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred CChHHHc-CcccCCCEEEEECC
Confidence 6665322 44566777776553
No 360
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=85.65 E-value=5.3 Score=54.55 Aligned_cols=136 Identities=16% Similarity=0.088 Sum_probs=69.6
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC-CeEEEe-chHHHHH-----HHHHHHHHCCCCceEEEecchh
Q 000101 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG-PHLIIV-PNAVLVN-----WKSELHKWLPSVSCIYYVGAKD 1086 (2239)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~G-P~LIVV-P~SLLsQ-----W~~Ef~KwaPslkvvvy~Gskd 1086 (2239)
.+...+.-.|+--|+|+|||.++..+|+.-+....... .-.+|| |.....+ ..+|=..-. -..+.|.-.
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~--g~tvgy~vR-- 463 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEV--GETCGYNVR-- 463 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhh--ccccccccc--
Confidence 33444666788899999999999988877654333222 123333 4443333 222211110 111111110
Q ss_pred hHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc----ccceEEEecCC
Q 000101 1087 QRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGT 1158 (2239)
Q Consensus 1087 ~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L----ka~rRLLLTGT 1158 (2239)
+. ......---++.+|.+-+.+.... ......++|+||.|..--..--+...+..+ +.-+.+++++|
T Consensus 464 -f~---Sa~prpyg~i~fctvgvllr~~e~-glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsat 534 (1282)
T KOG0921|consen 464 -FD---SATPRPYGSIMFCTVGVLLRMMEN-GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSAT 534 (1282)
T ss_pred -cc---ccccccccceeeeccchhhhhhhh-cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcc
Confidence 00 001111223667887777654321 123567899999997643333344444444 33345778888
No 361
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.49 E-value=5.1 Score=52.02 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=55.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCcc
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFN 1101 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfd 1101 (2239)
.+|..+.|+|||..+-++...+..... ...++.|....++..+...+...
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~~~~----------------------------- 200 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNALRNN----------------------------- 200 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHcC-----------------------------
Confidence 478999999999998888877765321 22344443344444333333210
Q ss_pred EEEEehhHHHHhhhhcccCCceEEEecccccccChh---hHHHHHhhcc-ccceEEEecCC
Q 000101 1102 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTGT 1158 (2239)
Q Consensus 1102 VVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~---SKlskaLk~L-ka~rRLLLTGT 1158 (2239)
+.+.+. ..+. ..++|||||.|.+.+.. ..+...+..+ .....+++|++
T Consensus 201 ----~~~~~~---~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 201 ----TMEEFK---EKYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred ----cHHHHH---HHHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 011111 1222 47799999999986532 2344444443 23345777765
No 362
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=85.30 E-value=3 Score=50.66 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=29.5
Q ss_pred CCceEEEeccccccc-ChhhHHHHHhhccccceEEEecCC
Q 000101 1120 VDWKYIIIDEAQRMK-DRESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIK-N~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
..|.+||||||+.|- +....+-+.+.......+++|+..
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 579999999999994 344566666677777778887764
No 363
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=85.27 E-value=3.4 Score=51.57 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceE
Q 000101 1003 DYQIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvv 1079 (2239)
-.|...+..+...+..+ .+. |+..+-|+|||..+..++..+.......+...=.|+ ....-.....|++..+
T Consensus 9 ~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~-----~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 9 ALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCT-----NCKRIDSGNHPDVHLV 83 (329)
T ss_pred hhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCH-----HHHHHhcCCCCCEEEe
Confidence 34566666666655433 334 899999999999998888777643211111111121 1111122223454444
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhc----ccCCceEEEecccccccC-hhhHHHHHhhccccceEEE
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLL 1154 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L----~kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLL 1154 (2239)
...|..-. .+.++.....+ ..-.+.++||||+|+|.. ....+.+.|...+....++
T Consensus 84 ~~~~~~i~-------------------id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 84 APDGQSIK-------------------KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred ccccccCC-------------------HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 33332111 12222111111 123689999999999943 3445666666656666777
Q ss_pred ecCC
Q 000101 1155 LTGT 1158 (2239)
Q Consensus 1155 LTGT 1158 (2239)
|+.+
T Consensus 145 l~t~ 148 (329)
T PRK08058 145 LLTE 148 (329)
T ss_pred EEeC
Confidence 7665
No 364
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.24 E-value=4.5 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|+.-+.|+|||..+.+++..+..
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEECCCCCCHHHHHHHHHHhhcc
Confidence 89999999999999888877764
No 365
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=85.24 E-value=0.8 Score=51.19 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=34.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~Kw 1072 (2239)
.+|+.+.|+|||..++.++..... ...++++|.......+....+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCCHHHHHHHHHHc
Confidence 478889999999999988877663 345788888655555554444443
No 366
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=85.20 E-value=3.2 Score=53.23 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
-|+....|+|||..+.++...+..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 378899999999999888877654
No 367
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.09 E-value=9.7 Score=46.33 Aligned_cols=39 Identities=26% Similarity=0.496 Sum_probs=25.7
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
...+|||||+|.+.. ....+...+..+....+++|+++.
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 467999999999954 223455555555555677776653
No 368
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=84.87 E-value=4.2 Score=50.83 Aligned_cols=145 Identities=15% Similarity=0.067 Sum_probs=77.6
Q ss_pred CChHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~Kw-aPs 1075 (2239)
.++|+|....+.+...+.++. + -|+....|+||+..|..+..+++......++ .=.|+.- .-+... -|+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~-Cg~C~sC------~~~~~g~HPD 75 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEA-CGFCHSC------ELMQSGNHPD 75 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCHHH------HHHHcCCCCC
Confidence 578888888888887765443 2 3788999999999999999888753321111 0011111 111111 133
Q ss_pred CceEEEec-chhhHHHHHHHHhhcCccEEEEehhHHHHhhhhc----ccCCceEEEecccccccC-hhhHHHHHhhcccc
Q 000101 1076 VSCIYYVG-AKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRC 1149 (2239)
Q Consensus 1076 lkvvvy~G-skd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L----~kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka 1149 (2239)
+..+.-.+ ++. .+.+.++.-...+ ..-.|+++|||+||+|.. ....+-++|..=+.
T Consensus 76 ~~~i~p~~~~~~------------------I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (319)
T PRK06090 76 LHVIKPEKEGKS------------------ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAP 137 (319)
T ss_pred EEEEecCcCCCc------------------CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCC
Confidence 32221111 000 0111121111111 123689999999999953 34456666666566
Q ss_pred ceEEEecCCCCCCCHHHHHH
Q 000101 1150 QRRLLLTGTPLQNDLKELWS 1169 (2239)
Q Consensus 1150 ~rRLLLTGTPIQNnL~ELws 1169 (2239)
...++|+++-...-+.-+.+
T Consensus 138 ~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CeEEEEEECChhhChHHHHh
Confidence 66666665533333333433
No 369
>PRK06921 hypothetical protein; Provisional
Probab=84.51 E-value=6.6 Score=47.78 Aligned_cols=27 Identities=33% Similarity=0.230 Sum_probs=22.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
+.+.+|.-++|+|||..+.+++..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 455689999999999999998887775
No 370
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=84.24 E-value=7.3 Score=41.71 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=24.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
+|.-..|+|||..+..++..+.. ..++++++..
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~ 35 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDI 35 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEEC
Confidence 57778999999999888777654 3456777664
No 371
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.11 E-value=5.2 Score=46.77 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=20.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
....+|..+.|+|||-.+.++...+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999988877766554
No 372
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.02 E-value=5.2 Score=52.66 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Li 1044 (2239)
|...+..+...+.++ .+. |++-+.|+|||..+..+...+.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444555555555433 233 6899999999988877776654
No 373
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=83.97 E-value=3.9 Score=50.64 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=28.3
Q ss_pred hhhcccCCceEEEecccccccC-hhhH---HHHHhhccccc--eEEEecCCC
Q 000101 1114 RSKLSKVDWKYIIIDEAQRMKD-RESV---LARDLDRYRCQ--RRLLLTGTP 1159 (2239)
Q Consensus 1114 ~s~L~kikWd~VIIDEAHrIKN-~~SK---lskaLk~Lka~--rRLLLTGTP 1159 (2239)
...|..++..++||||.|++.. ...+ ...+|+.+... --+.+.||+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 3567778999999999999743 3333 33334444222 235567875
No 374
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=83.87 E-value=2.8 Score=43.79 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=23.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 1063 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs 1063 (2239)
||.-+.|+|||..+-.++.++ .-+++.|....+..
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~ 36 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELIS 36 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhc------cccccccccccccc
Confidence 677889999998776666543 13556666655553
No 375
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.73 E-value=6.2 Score=53.97 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=74.4
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1402 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLS 1402 (2239)
..+||..+...++......|.+|||.+.....+..+.+.|... |..+..+||+++..+|.+...+...++.+ |+++
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVg 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIG 247 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEe
Confidence 4589999888887777778999999999999988888777654 78899999999999998888887764444 5677
Q ss_pred ccccccccCCCcCceEEEcCC
Q 000101 1403 IRAAGRGLNLQSADTVIIYDP 1423 (2239)
Q Consensus 1403 TrAGGeGLNLqaADtVIifDp 1423 (2239)
|+.+- =+.+...+.||+-+-
T Consensus 248 Trsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh-cccccCCCEEEEECC
Confidence 76433 255667777777654
No 376
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=83.56 E-value=5.7 Score=53.16 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=19.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|++-+-|+|||..+-.+...+..
T Consensus 42 Lf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 42 LFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 77999999999998888766653
No 377
>PRK14974 cell division protein FtsY; Provisional
Probab=83.40 E-value=10 Score=47.75 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=28.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec----hHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP----NAVLVNWKSEL 1069 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP----~SLLsQW~~Ef 1069 (2239)
.++.-..|+|||.++..+..++.. . ...++||.. .....||....
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~-~--g~~V~li~~Dt~R~~a~eqL~~~a 191 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKK-N--GFSVVIAAGDTFRAGAIEQLEEHA 191 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-c--CCeEEEecCCcCcHHHHHHHHHHH
Confidence 467889999999888777766643 2 235555553 23455664433
No 378
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.39 E-value=7.8 Score=49.62 Aligned_cols=41 Identities=15% Similarity=-0.025 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..+...+.++ .+ -|+..+.|+|||..|.++...+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444455444443 22 478999999999999888877753
No 379
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=83.00 E-value=9.8 Score=49.68 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=56.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCcc
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFN 1101 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfd 1101 (2239)
.+|.-++|+|||..+-++..++.... ....++.|....++......+..-.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~~~~f~~~~~~~l~~~~---------------------------- 194 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMSGDEFARKAVDILQKTH---------------------------- 194 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHHHHHHHhh----------------------------
Confidence 46899999999988877776665432 2234555555555544444442200
Q ss_pred EEEEehhHHHHhhhhcccCCceEEEecccccccChh---hHHHHHhhccc-cceEEEecCC
Q 000101 1102 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQRRLLLTGT 1158 (2239)
Q Consensus 1102 VVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~---SKlskaLk~Lk-a~rRLLLTGT 1158 (2239)
+.+......+ ...++|||||+|.+.+.. ..+...+..+. ....++||+.
T Consensus 195 ------~~~~~~~~~~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 195 ------KEIEQFKNEI--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred ------hHHHHHHHHh--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 0011111122 257899999999996532 23445555443 3346778743
No 380
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=82.92 E-value=6 Score=50.54 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=54.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCcc
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFN 1101 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfd 1101 (2239)
.+|....|+|||..+.++..++.+.. ....++.|....++..+...+.. +
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~~~~~~~~~~-----------~------------------ 188 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFTNDFVNALRN-----------N------------------ 188 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHHHHHHHHHHc-----------C------------------
Confidence 37899999999999988887776532 12344444333333322222211 0
Q ss_pred EEEEehhHHHHhhhhcccCCceEEEecccccccChh---hHHHHHhhcc-ccceEEEecCC
Q 000101 1102 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTGT 1158 (2239)
Q Consensus 1102 VVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~---SKlskaLk~L-ka~rRLLLTGT 1158 (2239)
+.+.+. ..+. ..++|||||.|.+.+.. ..+...+..+ .....+++|++
T Consensus 189 ----~~~~~~---~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 189 ----KMEEFK---EKYR--SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred ----CHHHHH---HHHH--hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 111111 1121 36799999999986532 2344455443 33456777776
No 381
>PF13245 AAA_19: Part of AAA domain
Probab=82.88 E-value=3.6 Score=41.04 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=32.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAVLV 1063 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~-k~~~GP~LIVVP~SLLs 1063 (2239)
.++-...|+|||-+++..+.+++.. .....++|||+|+....
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa 55 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAA 55 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHH
Confidence 4568899999999999999998853 22256899999987543
No 382
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=82.87 E-value=4.1 Score=51.14 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLMEF 1046 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lie~ 1046 (2239)
.++|+|....+.+...+..+. ++ |++-+-|+||+..|.++..+++..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 478888888888888776543 23 689999999999999999988753
No 383
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=82.78 E-value=5.5 Score=49.94 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLMEF 1046 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lie~ 1046 (2239)
.++|++....+.+...+.++. ++ |+..+.|+||+..|..+..+++..
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~ 51 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ 51 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 357888888888887776543 34 678999999999999999888753
No 384
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=82.19 E-value=8.2 Score=52.90 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=43.5
Q ss_pred ccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHH
Q 000101 1984 ILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLK 2042 (2239)
Q Consensus 1984 PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k 2042 (2239)
++|...|.--..... -.|...+.+||.--++.+--..-.++.|...|+...+..+
T Consensus 635 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (725)
T PRK07133 635 EIDELIIKLNKNNYK----VNFQNFLEKIFGGPKHIFAISKKLINEAKIYWKAINNTKK 689 (725)
T ss_pred chHHHHHHHHHhhHH----HHHHHHHHHHhCCcceEeeccHHHHHHHHHHHHHHHhhcc
Confidence 677666654443333 4578889999999999999999999999999999887654
No 385
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=82.05 E-value=4.3 Score=56.73 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1005 QleGLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
|..-+.+++.... ...|.||.-+.|+|||..+=.+...+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 4555777776433 345679999999999988766665543
No 386
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=81.68 E-value=1.8 Score=51.50 Aligned_cols=102 Identities=26% Similarity=0.376 Sum_probs=57.3
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHh
Q 000101 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVA 1096 (2239)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~ 1096 (2239)
.|-.|-|++...|+|||-.+.++...|+-. ...+-+...- ..++|
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~-----------------~~ke~vLELN----------ASdeR-------- 90 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGD-----------------SYKEAVLELN----------ASDER-------- 90 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhCh-----------------hhhhHhhhcc----------Ccccc--------
Confidence 345667999999999999988888777631 0111111110 01111
Q ss_pred hcCccEEEEehhHHHHhhhhcccCCceEEEecccccccC-hhhHHHHHhhccccceEEEe
Q 000101 1097 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLL 1155 (2239)
Q Consensus 1097 ~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLL 1155 (2239)
+.+||=.+...|...+-.|...++++||+|||+.|-. ..-.+.+++.-|....|++|
T Consensus 91 --GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 91 --GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred --ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhh
Confidence 2233323333333344456667899999999999854 23334444544554455544
No 387
>PRK06893 DNA replication initiation factor; Validated
Probab=81.63 E-value=9.3 Score=45.26 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=19.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
.+|....|+|||-.+.++...+..
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 378999999999888887776654
No 388
>CHL00095 clpC Clp protease ATP binding subunit
Probab=81.15 E-value=8.9 Score=53.58 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=20.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
..|.||.-+.|+|||..+-++...+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 34669999999999988877766554
No 389
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=81.15 E-value=6 Score=49.95 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCCe-EEEcCCCchHHHHHHHHHHHHHHH
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLMEF 1046 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnG-ILADEMGLGKTIQAIALIa~Lie~ 1046 (2239)
++|+|...-+.+..+.+.-.++ |+....|+|||..|..+...+...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5788888887777764433344 578999999999999999888753
No 390
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=80.86 E-value=7.2 Score=49.67 Aligned_cols=50 Identities=28% Similarity=0.236 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHHHHhh-c--CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC
Q 000101 1000 TLRDYQIVGLQWMLSLY-N--NKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~-~--n~lnGILADEMGLGKTIQAIALIa~Lie~k~~ 1049 (2239)
.-|+-|+.-+...+.-. . ...|.++.-.+|+|||.++-.++..+.+....
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~ 72 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSAN 72 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc
Confidence 35677777665444322 2 23457899999999999998888777765443
No 391
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=80.70 E-value=12 Score=48.77 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=25.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~ 1059 (2239)
.+|..+.|+|||..+-++..++.+... ...++.|...
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~~~ 169 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSE 169 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHH
Confidence 479999999999988888877765322 2244555433
No 392
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=80.70 E-value=3.5 Score=50.91 Aligned_cols=42 Identities=19% Similarity=-0.006 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1004 YQIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1004 YQleGLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
+|...|+-|..... ...+-++....|+|||-++.++...|..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 57777776665443 3344588899999999999999887763
No 393
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=80.31 E-value=19 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=18.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAY 1042 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~ 1042 (2239)
.+.+|.-+.|+|||..+.++...
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH
Confidence 35689999999999887766543
No 394
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=80.30 E-value=6.5 Score=47.69 Aligned_cols=110 Identities=23% Similarity=0.221 Sum_probs=55.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH------HHHHHHHHHHCCCCceEEEecchhhHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL------VNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL------sQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~ 1094 (2239)
-+.++-++|+|||+..=+++..+- ....++|+.|+.++ .-|..++.. -|...+ ....
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~-~p~~~~---------~~~~--- 115 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLES-QPKVNV---------NAVL--- 115 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhcc-Cccchh---------HHHH---
Confidence 456789999999988874443322 22234456665433 336666644 111100 0000
Q ss_pred HhhcCccEEEEehhHHHHhhhhcccC-CceEEEecccccccChhhHHHHHhhc----cccceEEEecCCC
Q 000101 1095 VAALKFNVLVTTYEFIMYDRSKLSKV-DWKYIIIDEAQRMKDRESVLARDLDR----YRCQRRLLLTGTP 1159 (2239)
Q Consensus 1095 i~~~kfdVVITTYE~L~kD~s~L~ki-kWd~VIIDEAHrIKN~~SKlskaLk~----Lka~rRLLLTGTP 1159 (2239)
...-......+.+. +..+++|||||.+....-..-+.+.. +....+++|-|-|
T Consensus 116 ------------e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp 173 (269)
T COG3267 116 ------------EQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP 173 (269)
T ss_pred ------------HHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc
Confidence 00000111222233 34789999999986543333333333 2344568888877
No 395
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=79.81 E-value=11 Score=51.08 Aligned_cols=148 Identities=13% Similarity=0.158 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHH----HHHHHH-----HH
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVN----WKSELH-----KW 1072 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQ----W~~Ef~-----Kw 1072 (2239)
|+=..-++.++..|.++...++++ =|.|||..+..++.++.... ...++|.+|.. .... -..-++ .|
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 334555778888888888777775 79999998887777776432 24688888833 3222 222233 57
Q ss_pred CCCCceEE-EecchhhHHHHHHH-HhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccc-c
Q 000101 1073 LPSVSCIY-YVGAKDQRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1149 (2239)
Q Consensus 1073 aPslkvvv-y~Gskd~Rk~l~~~-i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lk-a 1149 (2239)
+|....++ ..|+.....-.... ...+...+++.+. ..+......+++||||||+.+.. ..+...+=.+. .
T Consensus 249 fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ar-----s~~s~RG~~~DLLIVDEAAfI~~--~~l~aIlP~l~~~ 321 (752)
T PHA03333 249 FPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLAS-----SPNAARGQNPDLVIVDEAAFVNP--GALLSVLPLMAVK 321 (752)
T ss_pred cCCCceEEEeeCCeeEEEEecCcccccCcceeEEecc-----cCCCcCCCCCCEEEEECcccCCH--HHHHHHHHHHccC
Confidence 77553322 33321100000000 0000011222111 12334445789999999999965 22222222222 3
Q ss_pred ceEEEecCCCC
Q 000101 1150 QRRLLLTGTPL 1160 (2239)
Q Consensus 1150 ~rRLLLTGTPI 1160 (2239)
...+++.-||.
T Consensus 322 ~~k~IiISS~~ 332 (752)
T PHA03333 322 GTKQIHISSPV 332 (752)
T ss_pred CCceEEEeCCC
Confidence 44555555553
No 396
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=79.80 E-value=7 Score=54.79 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1005 QleGLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
|..-+.+++.... ...|.||.-+.|+|||..+-+++..+.
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3445777776543 335679999999999988877776554
No 397
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=79.75 E-value=13 Score=50.13 Aligned_cols=98 Identities=14% Similarity=0.245 Sum_probs=56.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCcc
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFN 1101 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfd 1101 (2239)
.+|.-..|+|||-.+.++..++..... ...++.|.-..++..+...+.. +
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~-g~~V~Yitaeef~~el~~al~~-----------~------------------ 366 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYP-GTRVRYVSSEEFTNEFINSIRD-----------G------------------ 366 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEeeHHHHHHHHHHHHHh-----------c------------------
Confidence 478899999999988888777664222 2344444444455444433321 0
Q ss_pred EEEEehhHHHHhhhhcccCCceEEEecccccccChh---hHHHHHhhcccc-ceEEEecCC
Q 000101 1102 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYRC-QRRLLLTGT 1158 (2239)
Q Consensus 1102 VVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~---SKlskaLk~Lka-~rRLLLTGT 1158 (2239)
.++.+. ..+. ..++||||+.|.+.+.. ..++..+..+.. ...|++|+.
T Consensus 367 ----~~~~f~---~~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 367 ----KGDSFR---RRYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred ----cHHHHH---HHhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 011111 1122 46899999999997643 345555555433 345667665
No 398
>PRK05642 DNA replication initiation factor; Validated
Probab=79.66 E-value=13 Score=44.25 Aligned_cols=38 Identities=26% Similarity=0.526 Sum_probs=25.4
Q ss_pred CceEEEecccccccCh---hhHHHHHhhccc-cceEEEecCC
Q 000101 1121 DWKYIIIDEAQRMKDR---ESVLARDLDRYR-CQRRLLLTGT 1158 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~---~SKlskaLk~Lk-a~rRLLLTGT 1158 (2239)
..+++|||+.|.+.+. ...+...+..+. ...++++|+|
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 3478999999988542 234555565543 3567888877
No 399
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=79.57 E-value=9.9 Score=53.91 Aligned_cols=127 Identities=17% Similarity=0.083 Sum_probs=71.6
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCc
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslk 1077 (2239)
+..|-+-|.++|..++.- +.-.+|.-.-|+|||.+. ..+..+++.. ...+++++|+.....-..+- .
T Consensus 344 g~~Ls~eQr~Av~~il~s---~~v~vv~G~AGTGKTT~l-~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e~---t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTDG---RDLGVVVGYAGTGKSAML-GVAREAWEAA--GYEVRGAALSGIAAENLEGG---S---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhcC---CCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEecCcHHHHHHHhhc---c----
Confidence 347999999999887741 223578888999999764 4444444432 24577788987654322210 0
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHH--hhhhcccCCceEEEecccccccChhhHHHHHhhcc-ccceEEE
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMY--DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLL 1154 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~k--D~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~rRLL 1154 (2239)
|... .|...+.. ..........++|||||+-.+-. ..+.+.|... ....+|+
T Consensus 411 -----Gi~a------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~--~~m~~LL~~a~~~garvV 465 (988)
T PRK13889 411 -----GIAS------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT--RQLERVLSHAADAGAKVV 465 (988)
T ss_pred -----Ccch------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH--HHHHHHHHhhhhCCCEEE
Confidence 0000 00011100 00011123568999999998743 2333444333 4567999
Q ss_pred ecCCCCCC
Q 000101 1155 LTGTPLQN 1162 (2239)
Q Consensus 1155 LTGTPIQN 1162 (2239)
|.|-|-|-
T Consensus 466 LVGD~~QL 473 (988)
T PRK13889 466 LVGDPQQL 473 (988)
T ss_pred EECCHHHc
Confidence 99987554
No 400
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=79.33 E-value=5.8 Score=50.58 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=57.9
Q ss_pred HHHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecc
Q 000101 1006 IVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084 (2239)
Q Consensus 1006 leGLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gs 1084 (2239)
..+++.++. -+..+.-.+|.-+.|.|||..++.++..+.. ..+++|+|.-.....++.....++.-..
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs~~qi~~Ra~rlg~~~-------- 136 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEESPEQIKLRADRLGIST-------- 136 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcCHHHHHHHHHHcCCCc--------
Confidence 455666653 1222333478999999999988888766653 2357888875444445444333321111
Q ss_pred hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEeccccccc
Q 000101 1085 KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 1134 (2239)
Q Consensus 1085 kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIK 1134 (2239)
-++.+.....+..-...+...+.++||||+.+.+.
T Consensus 137 ---------------~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 137 ---------------ENLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred ---------------ccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 11222222222222233445688999999998874
No 401
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=79.24 E-value=11 Score=44.22 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH-HHH--HHHHCCCCceEEEecch----hhHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW-KSE--LHKWLPSVSCIYYVGAK----DQRSRL 1091 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW-~~E--f~KwaPslkvvvy~Gsk----d~Rk~l 1091 (2239)
..+.++.-..|.|||-.|+++...... ...+++||==.. ..| ..| +-+.++.+.+..+..+- ......
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g---~G~~V~ivQFlK--g~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~ 96 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG---HGKKVGVVQFIK--GAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERD 96 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH---CCCeEEEEEEec--CCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHH
Confidence 445678899999999999998877654 234556552000 011 112 11222333222211110 000000
Q ss_pred HHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccC----hhhHHHHHhhccccceEEEecCCCCCCCHHHH
Q 000101 1092 FSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDLKEL 1167 (2239)
Q Consensus 1092 ~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN----~~SKlskaLk~Lka~rRLLLTGTPIQNnL~EL 1167 (2239)
.... -+.+......+..-.|++||+||.=.+.+ ....+...|..-+..--|+|||- +-..+|
T Consensus 97 ~~~~-----------~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR---~~p~~L 162 (191)
T PRK05986 97 IAAA-----------REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGR---GAPREL 162 (191)
T ss_pred HHHH-----------HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECC---CCCHHH
Confidence 0000 01122234556677899999999876644 34455666665555668999998 444555
Q ss_pred HHHHhhh
Q 000101 1168 WSLLNLL 1174 (2239)
Q Consensus 1168 wsLLnFL 1174 (2239)
..+.+++
T Consensus 163 ie~ADlV 169 (191)
T PRK05986 163 IEAADLV 169 (191)
T ss_pred HHhCchh
Confidence 5544443
No 402
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=79.12 E-value=11 Score=42.76 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
-||..+.|+|||..+..++..+..
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 378999999999999888887764
No 403
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=79.10 E-value=29 Score=45.24 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=82.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcC
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALK 1099 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV--P~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~k 1099 (2239)
.++.-..|+|||.++..++..+....+ ..++||+ +-.....| .+..|+....+-++
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G--~~V~Lit~Dt~R~aA~e--QLk~yAe~lgvp~~------------------ 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMG--KSVSLYTTDNYRIAAIE--QLKRYADTMGMPFY------------------ 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEecccchhhhHHH--HHHHHHHhcCCCee------------------
Confidence 357789999999999888875532222 2444444 33344455 34444322111111
Q ss_pred ccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhH---HHHHhhcc----ccceEEEecCCCCCCCHHHHHHHHh
Q 000101 1100 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY----RCQRRLLLTGTPLQNDLKELWSLLN 1172 (2239)
Q Consensus 1100 fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SK---lskaLk~L----ka~rRLLLTGTPIQNnL~ELwsLLn 1172 (2239)
+...+......+....+++||||=+-+.-..... +...+..+ +....|.|++|--++.+.+....+.
T Consensus 284 ------~~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 284 ------PVKDIKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred ------ehHHHHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 0111111122333457889999977665322222 22222222 2345678899977777777777666
Q ss_pred hhcCc-----------ccCChHHHHhhhcCCcccCCCCCCCChh
Q 000101 1173 LLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNADDD 1205 (2239)
Q Consensus 1173 FLlP~-----------iF~s~k~F~e~F~kPf~~~g~~~~~e~d 1205 (2239)
.+.+. -++..-.+...+..|+...+......++
T Consensus 358 ~~~~~glIlTKLDEt~~~G~il~i~~~~~lPI~ylt~GQ~VPeD 401 (432)
T PRK12724 358 SLNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEVPFD 401 (432)
T ss_pred CCCCCEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCCCCCCC
Confidence 65443 1334445556677887766554444433
No 404
>PRK10865 protein disaggregation chaperone; Provisional
Probab=79.04 E-value=6.4 Score=55.18 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1005 QleGLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
|..-+..++..+. ...|.||.-+.|+|||..+-++...+.
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 3444777776432 345679999999999988877776554
No 405
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=78.66 E-value=41 Score=41.45 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=82.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec----hHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP----NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP----~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~ 1094 (2239)
+....|.-..|+|||..+..+...+.. ....+.+|.- ...+.||...... +
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~----~------------------ 129 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKT----I------------------ 129 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHhhh----c------------------
Confidence 345578888999999887766665542 2234555552 2466777643332 1
Q ss_pred HhhcCccEEE-EehhHHHHhhhhccc-CCceEEEecccccccChhhH---HHHHhhcccc-ceEEEecCCCCCCCHHHHH
Q 000101 1095 VAALKFNVLV-TTYEFIMYDRSKLSK-VDWKYIIIDEAQRMKDRESV---LARDLDRYRC-QRRLLLTGTPLQNDLKELW 1168 (2239)
Q Consensus 1095 i~~~kfdVVI-TTYE~L~kD~s~L~k-ikWd~VIIDEAHrIKN~~SK---lskaLk~Lka-~rRLLLTGTPIQNnL~ELw 1168 (2239)
++.+.. .+...+......+.. .++++||||-+=+.-..... +...+..... ...|.|+||--.++..+..
T Consensus 130 ----~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 130 ----GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred ----CceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 122222 122233322333332 36899999988776332222 2222222223 2356688887777777776
Q ss_pred HHHhhhcCc-----------ccCChHHHHhhhcCCcccCCCCCC
Q 000101 1169 SLLNLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHN 1201 (2239)
Q Consensus 1169 sLLnFLlP~-----------iF~s~k~F~e~F~kPf~~~g~~~~ 1201 (2239)
.-|+-+.+. -++..-.+...+..|+...+....
T Consensus 206 ~~f~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~~it~Gq~ 249 (270)
T PRK06731 206 TNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 249 (270)
T ss_pred HHhCCCCCCEEEEEeecCCCCccHHHHHHHHHCcCEEEEeCCCC
Confidence 666654332 123334455556677766544433
No 406
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=78.50 E-value=12 Score=47.26 Aligned_cols=44 Identities=32% Similarity=0.369 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHH-Hhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWML-SLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1002 RPYQleGLqwLl-sL~~--n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|+-+++-+.-.+ .... ...+.+|.-..|+|||..+-.++..+..
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 555555554443 2222 2345799999999999988888776654
No 407
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=78.43 E-value=11 Score=51.64 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=69.3
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHH----HHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDIL----EEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1399 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDIL----ed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~Vf 1399 (2239)
..|||..+..-.+......|.++||.+.....+.-+ ..+|...|+++..++|+++..+|.++++....++.+ |+
T Consensus 291 TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~--Iv 368 (681)
T PRK10917 291 VGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD--IV 368 (681)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC--EE
Confidence 358898765544444456788999999988776544 445555689999999999999999999999864444 44
Q ss_pred EEeccccccccCCCcCceEEEcC
Q 000101 1400 LLSIRAAGRGLNLQSADTVIIYD 1422 (2239)
Q Consensus 1400 LLSTrAGGeGLNLqaADtVIifD 1422 (2239)
+.+.......+.+...+.||+=.
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred EchHHHhcccchhcccceEEEec
Confidence 44433455567788888877633
No 408
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.43 E-value=20 Score=47.87 Aligned_cols=38 Identities=16% Similarity=0.054 Sum_probs=25.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
+...+|...+|+|||..+..|+..+... +....+.+|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEe
Confidence 4444677889999999888887766543 2223455554
No 409
>PRK12377 putative replication protein; Provisional
Probab=78.21 E-value=19 Score=43.58 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=29.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~ 1066 (2239)
.+.+|.-..|+|||-.+.++...+.. .+ ..++++.-..++....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~-~g--~~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA-KG--RSVIVVTVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-cC--CCeEEEEHHHHHHHHH
Confidence 34588899999999999999888874 22 2444444344555443
No 410
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=78.21 E-value=5.4 Score=52.25 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHhhc--------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000101 1001 LRDYQIVGLQWMLSLYN--------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~--------n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~K 1071 (2239)
.+.+..+.+.|.+.... ...+.||+...|+|||+.+-++..++ ..+++-|-...++..|.-|..+
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHH
Confidence 44455555555553322 33456899999999999988776532 2356655555999999888876
No 411
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=77.55 E-value=3.5 Score=49.33 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHH-HHHHHHHHHHCCCCce
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVL-VNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-~~~GP~LIVVP~SLL-sQW~~Ef~KwaPslkv 1078 (2239)
|-+-|..++.+ . ..+.++-..-|+|||.+.+.-+.+++... .....+|+|+.+... ......+...++...
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~- 73 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQ- 73 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccc-
Confidence 45678888877 2 33455666699999999999999998755 344568999987753 333344444221100
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----hhcccCCceEEEecccc
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQ 1131 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s~L~kikWd~VIIDEAH 1131 (2239)
.....+. .+ .........+.|.|+..+.... .....+.-.+-|+|+..
T Consensus 74 --~~~~~~~--~~-~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 --QESSDNE--RL-RRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp --HCCTT-H--HH-HHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred --ccccccc--cc-cccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000000 11 1112224467888888776431 22222334556666655
No 412
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=76.78 E-value=5.4 Score=45.91 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=38.5
Q ss_pred hhhcccCCceEEEecccccccC----hhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhh
Q 000101 1114 RSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLL 1174 (2239)
Q Consensus 1114 ~s~L~kikWd~VIIDEAHrIKN----~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFL 1174 (2239)
...+..-.|++||+||.-.+.+ ....+...|..-+..--++|||.- -..+|..+-+++
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~---~p~~l~e~AD~V 151 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRG---CPQDLLELADLV 151 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCC---CCHHHHHhCcee
Confidence 4556667899999999876543 234555666665666689999984 445555544443
No 413
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=76.74 E-value=9.7 Score=49.37 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHHhCCCCCeEEEechHHHHH
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEFKGNYGPHLIIVPNAVLVN 1064 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lie~k~~~GP~LIVVP~SLLsQ 1064 (2239)
.-++..|..++.+..++.|.|+.-..|+|||-.++++-.+ .+. .+ ..+++..|+.+
T Consensus 193 r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~-sG-----~f~T~a~Lf~~ 249 (449)
T TIGR02688 193 RQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILI-SG-----GTITVAKLFYN 249 (449)
T ss_pred HHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHH-cC-----CcCcHHHHHHH
Confidence 3445556666666778999999999999999888887665 232 22 45555555554
No 414
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=76.66 E-value=77 Score=41.21 Aligned_cols=133 Identities=22% Similarity=0.239 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhc
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
+....|...||.|||-+..-|.+.+...++. ..+=||+--+-----...|..++ .+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya--------------------~im-- 259 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYA--------------------DIM-- 259 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHH--------------------HHh--
Confidence 3444788999999997776666655522333 34444432211000111222221 111
Q ss_pred Ccc-EEEEehhHHHHhhhhcccCCceEEEecccccc-cChhhHH--HHHhhc--cccceEEEecCCCCCCCHHHHHHHHh
Q 000101 1099 KFN-VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM-KDRESVL--ARDLDR--YRCQRRLLLTGTPLQNDLKELWSLLN 1172 (2239)
Q Consensus 1099 kfd-VVITTYE~L~kD~s~L~kikWd~VIIDEAHrI-KN~~SKl--skaLk~--Lka~rRLLLTGTPIQNnL~ELwsLLn 1172 (2239)
+.. .++.+..-|......|. ++++|.||=+-+- ++ ...+ .+.+.. .....-|.|++|-=.+++.+++.-|.
T Consensus 260 ~vp~~vv~~~~el~~ai~~l~--~~d~ILVDTaGrs~~D-~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~ 336 (407)
T COG1419 260 GVPLEVVYSPKELAEAIEALR--DCDVILVDTAGRSQYD-KEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS 336 (407)
T ss_pred CCceEEecCHHHHHHHHHHhh--cCCEEEEeCCCCCccC-HHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc
Confidence 222 23444554544444443 3488999965543 22 1111 112221 13455788999998899999998888
Q ss_pred hhcCc
Q 000101 1173 LLLPE 1177 (2239)
Q Consensus 1173 FLlP~ 1177 (2239)
++...
T Consensus 337 ~~~i~ 341 (407)
T COG1419 337 LFPID 341 (407)
T ss_pred cCCcc
Confidence 87553
No 415
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.65 E-value=8.3 Score=52.20 Aligned_cols=41 Identities=15% Similarity=-0.014 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..+...+.++ .+ -|+...-|+|||..|..+...+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 556666666655443 23 378999999999999888877654
No 416
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=76.58 E-value=12 Score=46.52 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=19.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
||.-+.|+|||..+..+...+..
T Consensus 40 Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 40 LFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 78999999999888888777653
No 417
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=76.11 E-value=18 Score=43.53 Aligned_cols=128 Identities=23% Similarity=0.209 Sum_probs=63.0
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHHHC-CCCceEEEecchhh-HHHHHHHHhhcCcc-EE
Q 000101 1029 GLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHKWL-PSVSCIYYVGAKDQ-RSRLFSQVAALKFN-VL 1103 (2239)
Q Consensus 1029 GLGKTIQAIALIa~Lie~k~~~GP~LIVV--P~SLLsQW~~Ef~Kwa-Pslkvvvy~Gskd~-Rk~l~~~i~~~kfd-VV 1103 (2239)
|.|||-.+++|...+.. .+ ++++||= |..-+..|.+-..+-. ....+.+|...... -...........|+ |+
T Consensus 12 GaGKTT~~~~LAs~la~-~G--~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~Vl 88 (231)
T PF07015_consen 12 GAGKTTAAMALASELAA-RG--ARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVL 88 (231)
T ss_pred CCcHHHHHHHHHHHHHH-CC--CeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEE
Confidence 89999999888888764 22 3555554 8888889966544322 22334445543322 12222323334566 45
Q ss_pred EEehhHHHHhhhhcccCCceEEEe---------cccccccChhhHHHHHhhccccceEEEecCCCCC
Q 000101 1104 VTTYEFIMYDRSKLSKVDWKYIII---------DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1104 ITTYE~L~kD~s~L~kikWd~VII---------DEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
|-|.+.-.......-. .-++||| ||+=+..+.-.+..+.. ....++++++|=+|..
T Consensus 89 vDleG~as~~~~~aia-~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~-~~~ip~~Vl~Tr~~~~ 153 (231)
T PF07015_consen 89 VDLEGGASELNDYAIA-RSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAE-RRDIPAAVLFTRVPAA 153 (231)
T ss_pred EeCCCCCchhHHHHHH-HCCEEEECCCCChHHHHHHHHHHHHHHHHHHhh-CCCCCeeEEEecCCcc
Confidence 5554432211111100 2334443 33322211111111111 2245779999999965
No 418
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=75.29 E-value=17 Score=49.10 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..+...+.++ .+ -|+..+-|+|||..|.++...+..
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344444554444332 22 378999999999999888877754
No 419
>PRK11823 DNA repair protein RadA; Provisional
Probab=74.71 E-value=8.6 Score=50.15 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=59.0
Q ss_pred HHHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecc
Q 000101 1006 IVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084 (2239)
Q Consensus 1006 leGLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gs 1084 (2239)
..+++.++. -+..+.-.+|.-++|+|||..++.++..+.. ...++|.|.-.....++.....++.-....
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~------ 136 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEESASQIKLRAERLGLPSDN------ 136 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccccHHHHHHHHHHcCCChhc------
Confidence 456666663 1222333478999999999988888776552 235778887554555554444443211111
Q ss_pred hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEeccccccc
Q 000101 1085 KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 1134 (2239)
Q Consensus 1085 kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIK 1134 (2239)
+.+..-..+......+...+.++||||+.+.+.
T Consensus 137 -----------------l~~~~e~~l~~i~~~i~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 137 -----------------LYLLAETNLEAILATIEEEKPDLVVIDSIQTMY 169 (446)
T ss_pred -----------------EEEeCCCCHHHHHHHHHhhCCCEEEEechhhhc
Confidence 222211112222233445678999999998774
No 420
>PRK09183 transposase/IS protein; Provisional
Probab=74.69 E-value=16 Score=44.34 Aligned_cols=42 Identities=21% Similarity=0.093 Sum_probs=28.0
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000101 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2239)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL 1062 (2239)
.+.+.+|.-+.|+|||..+.++...+.. . ...++++.-..++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~-~--G~~v~~~~~~~l~ 142 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR-A--GIKVRFTTAADLL 142 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH-c--CCeEEEEeHHHHH
Confidence 4677889999999999999888655443 2 2345555433333
No 421
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=74.44 E-value=14 Score=48.15 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=24.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
..+++..+|+|||.++..+..++.. . .. +++||+
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~-~-g~-kV~lV~ 130 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKK-K-GL-KVGLVA 130 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-c-CC-eEEEec
Confidence 4578899999999999888877653 2 23 444444
No 422
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=74.42 E-value=8.3 Score=50.27 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=54.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCcc
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFN 1101 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfd 1101 (2239)
.+|..+.|+|||-.+-++..++... ..+++.|....+.......+.. +
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f~~~~~~~l~~-----------~------------------ 191 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELFTEHLVSAIRS-----------G------------------ 191 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHHHHHHHHHHhc-----------c------------------
Confidence 4788999999999888887777642 2345555433333322222211 0
Q ss_pred EEEEehhHHHHhhhhcccCCceEEEecccccccChh---hHHHHHhhcc-ccceEEEecCC
Q 000101 1102 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTGT 1158 (2239)
Q Consensus 1102 VVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~---SKlskaLk~L-ka~rRLLLTGT 1158 (2239)
..+.+. ..+ ...++|||||.|.+.+.. ..+...+..+ .....+++|++
T Consensus 192 ----~~~~f~---~~~--~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~ 243 (445)
T PRK12422 192 ----EMQRFR---QFY--RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISST 243 (445)
T ss_pred ----hHHHHH---HHc--ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecC
Confidence 001111 111 257899999999996532 2344444433 23457888875
No 423
>PRK04132 replication factor C small subunit; Provisional
Probab=74.41 E-value=7.8 Score=53.99 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=34.6
Q ss_pred CceEEEeccccccc-ChhhHHHHHhhccccceEEEecCCCCCCCHHHHH
Q 000101 1121 DWKYIIIDEAQRMK-DRESVLARDLDRYRCQRRLLLTGTPLQNDLKELW 1168 (2239)
Q Consensus 1121 kWd~VIIDEAHrIK-N~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELw 1168 (2239)
++.+|||||+|+|- .....+.+.|..+....+++|+.++...-+.-|.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr 678 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 678 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh
Confidence 58899999999994 2445566777777778889998887554444333
No 424
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=74.40 E-value=13 Score=48.73 Aligned_cols=41 Identities=15% Similarity=0.016 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhcCC-C-C-eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK-L-N-GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~-l-n-GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+.++...+..+ . + -|+.-+.|+|||..+.+++.++..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 555666666655443 2 3 378999999999999988887764
No 425
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=74.29 E-value=15 Score=45.85 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|..++..+...+.++. .-|+..+.|+||+..+.+++.+++.
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLS 52 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5556666666655442 3388999999999999999988875
No 426
>PRK13342 recombination factor protein RarA; Reviewed
Probab=73.91 E-value=12 Score=48.14 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=16.7
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa 1041 (2239)
+.||.-+.|+|||..+-++..
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 568899999999977766543
No 427
>PRK04195 replication factor C large subunit; Provisional
Probab=73.53 E-value=26 Score=46.17 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=18.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (2239)
....||.-+.|+|||..+-+++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345689999999999887666543
No 428
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=73.13 E-value=8.7 Score=48.67 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 1063 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs 1063 (2239)
+|-+-|..++++++..+. .+.+..|--.-|+|||...=+++.++.. ....+++++|+.+..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHHH
Confidence 366789999999977664 3444577888999999887666665532 345788888988654
No 429
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=72.74 E-value=9.9 Score=51.65 Aligned_cols=105 Identities=18% Similarity=0.194 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEec-hHHHHHHHHHHHHHCCCCce
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVP-NAVLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP-~SLLsQW~~Ef~KwaPslkv 1078 (2239)
|-|-|..++.+- ..+.++-...|+|||-+.+.-|.+++...+ ....+|+|+. ......-...+.+.++.
T Consensus 2 Ln~~Q~~av~~~------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~--- 72 (664)
T TIGR01074 2 LNPQQQEAVEYV------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGK--- 72 (664)
T ss_pred CCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCc---
Confidence 678898887642 235566677999999999999999996433 3345677764 55666666666554421
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhc--ccCCceEEEeccccc
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKL--SKVDWKYIIIDEAQR 1132 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L--~kikWd~VIIDEAHr 1132 (2239)
.....|.|.|+..|.... ... ....-.+-|+|+...
T Consensus 73 ------------------~~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 73 ------------------GEARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred ------------------cccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 012357888988886432 111 112334567787653
No 430
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=72.73 E-value=38 Score=40.10 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=25.2
Q ss_pred CceEEEecccccccChh---hHHHHHhhcc-ccceEEEecC
Q 000101 1121 DWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTG 1157 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~~---SKlskaLk~L-ka~rRLLLTG 1157 (2239)
..++||||..|.+.+.. ..+...+..+ .....+++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 68999999999998753 3444555544 3445677765
No 431
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=72.48 E-value=12 Score=47.59 Aligned_cols=116 Identities=22% Similarity=0.197 Sum_probs=65.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhh
Q 000101 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAA 1097 (2239)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~ 1097 (2239)
...|.+|....|+|||+.|-++... ....++=|-=..+...|.-|-.+.+.-+
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ake------aga~fInv~~s~lt~KWfgE~eKlv~Av--------------------- 178 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKE------AGANFINVSVSNLTSKWFGEAQKLVKAV--------------------- 178 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHH------cCCCcceeeccccchhhHHHHHHHHHHH---------------------
Confidence 4567799999999999988777542 1223333333445567776655543100
Q ss_pred cCccEEEEehhHHHHhhhhcccCCceEEEecccccccC----hhhHHHHHhh--------ccc--cc-eEEEecCCCCCC
Q 000101 1098 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLARDLD--------RYR--CQ-RRLLLTGTPLQN 1162 (2239)
Q Consensus 1098 ~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN----~~SKlskaLk--------~Lk--a~-rRLLLTGTPIQN 1162 (2239)
...-.++....|.|||..-+.. .....++.++ .+. .. +.|+|-|| |
T Consensus 179 ----------------FslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT---N 239 (386)
T KOG0737|consen 179 ----------------FSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT---N 239 (386)
T ss_pred ----------------HhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC---C
Confidence 0111256778888999876631 1112222222 222 22 35556666 8
Q ss_pred CHHHHHHHHhhhcCccc
Q 000101 1163 DLKELWSLLNLLLPEVF 1179 (2239)
Q Consensus 1163 nL~ELwsLLnFLlP~iF 1179 (2239)
.+.|||.-+---+|..|
T Consensus 240 RP~DlDeAiiRR~p~rf 256 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRF 256 (386)
T ss_pred CCccHHHHHHHhCccee
Confidence 88999875544445443
No 432
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=72.21 E-value=14 Score=51.15 Aligned_cols=26 Identities=35% Similarity=0.403 Sum_probs=20.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
..|.||.-+.|+|||..+-++...+.
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 45679999999999988877765544
No 433
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=72.19 E-value=14 Score=46.50 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCCe-EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnG-ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
++|++....+.+...+..-.+. |+...-|+|||..+..+...+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcC
Confidence 4677777777777665544444 68899999999999888887764
No 434
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=71.91 E-value=45 Score=46.17 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=36.0
Q ss_pred hhHhhcccHHHHHHHHHH-HHHhc---------CCeEEEEEccHHHHHHHHHHHHH
Q 000101 1320 DFLVKSCGKLWILDRILI-KLQRT---------GHRVLLFSTMTKLLDILEEYLQW 1365 (2239)
Q Consensus 1320 d~Li~~SGKLelLdrIL~-kLkat---------GhKVLIFSQ~t~~LDILed~L~~ 1365 (2239)
+.....+.|+..|.++|. +.... ...|||-|..-.++--|.++|..
T Consensus 345 e~~lE~~pKw~~Ltdil~~e~~~~~~~~~~~~~~~~Vlv~c~dertC~ql~d~lt~ 400 (892)
T KOG0442|consen 345 ESELEECPKWEVLTDILFKEIEHEKERADRSNDQGSVLVACSDERTCAQLRDYLTL 400 (892)
T ss_pred ccccccCCCcHHHHHHHHhhhhhHHHHhhhcCCCCceEEEeccchhHHHHHHHHhc
Confidence 345678999999999993 33222 23599999999999999999975
No 435
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.68 E-value=40 Score=45.95 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=26.8
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
.+.+|||||+|+|.. ....+.+.|.......+++|+.|-
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 688999999999943 233455555555566677776663
No 436
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=71.00 E-value=36 Score=45.06 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=22.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
+|.-.+|.|||.++..+..++....+. ..+.+|.
T Consensus 260 ~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~ 293 (484)
T PRK06995 260 ALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLT 293 (484)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEe
Confidence 577899999998887777766543332 2344443
No 437
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=70.92 E-value=15 Score=50.68 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
.|-|-|.++|.+- ....++...-|+|||.+.+.-+++|+...+ ....+|+|+-+. ........+.+.++.
T Consensus 4 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~-- 75 (715)
T TIGR01075 4 GLNDKQREAVAAP------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGT-- 75 (715)
T ss_pred ccCHHHHHHHcCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcc--
Confidence 5889999988632 234567778999999999999999997533 345678888765 444455555554321
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----hhcccCCceEEEeccccc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQR 1132 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s~L~kikWd~VIIDEAHr 1132 (2239)
....+.|.|+..+.... .........+.|+|+...
T Consensus 76 --------------------~~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 114 (715)
T TIGR01075 76 --------------------SARGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDDQ 114 (715)
T ss_pred --------------------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 11257788888776431 111122334567887643
No 438
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=70.80 E-value=17 Score=47.69 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhhc-CC----CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCC-eEEEechH-HHHHHHHHHHHHC--
Q 000101 1003 DYQIVGLQWMLSLYN-NK----LNGILADEMGLGKTVQVMALIAYLMEFKGNYGP-HLIIVPNA-VLVNWKSELHKWL-- 1073 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~-n~----lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP-~LIVVP~S-LLsQW~~Ef~Kwa-- 1073 (2239)
|+|...+..+.-... .+ ..++|.-.=|-|||..+.++.+|.+-..+..++ ++++++.. ....-..++..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 577766665553311 11 124666678999999888887776654455454 55666654 2333334444443
Q ss_pred -CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhH----HHHhhhhcccCCceEEEecccccccChhhHHHHHhh
Q 000101 1074 -PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEF----IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1145 (2239)
Q Consensus 1074 -Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~----L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk 1145 (2239)
|.+..... .++ .....-.|.....+. +..+...+...+..++|+||+|.+++. .++.+|.
T Consensus 81 ~~~l~~~~~-------~~~---~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~ 145 (477)
T PF03354_consen 81 SPELRKRKK-------PKI---IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD--ELYDALE 145 (477)
T ss_pred Chhhccchh-------hhh---hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH--HHHHHHH
Confidence 22221000 000 011111122111111 123345566678899999999999863 3444444
No 439
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=70.74 E-value=13 Score=43.57 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=33.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe----chHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV----PNAVLVNWK 1066 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV----P~SLLsQW~ 1066 (2239)
+.-.+|+...|+|||..++.++..+.... ..++|++. |..++..+.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E~~~~~~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLEMSKEQLLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCCCCHHHHHHHHH
Confidence 33458999999999999988887776532 34788888 344555554
No 440
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=70.69 E-value=3.6 Score=57.05 Aligned_cols=114 Identities=22% Similarity=0.301 Sum_probs=73.4
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHH----HHHHHHHHHCCCCceEEEecchhhHH
Q 000101 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLV----NWKSELHKWLPSVSCIYYVGAKDQRS 1089 (2239)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLs----QW~~Ef~KwaPslkvvvy~Gskd~Rk 1089 (2239)
+|.-..+.++.+.+|.|||+.+-..+.+.+...+. +.+++|+|.. ++. .|...+. .++++++-..|....-
T Consensus 939 ~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd- 1014 (1230)
T KOG0952|consen 939 LYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPD- 1014 (1230)
T ss_pred EeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCC-
Confidence 33445667889999999999987766666554444 7899999965 443 3654443 3567777666653221
Q ss_pred HHHHHHhhcCccEEEEehhHHHHhhhhccc----CCceEEEecccccccCh
Q 000101 1090 RLFSQVAALKFNVLVTTYEFIMYDRSKLSK----VDWKYIIIDEAQRMKDR 1136 (2239)
Q Consensus 1090 ~l~~~i~~~kfdVVITTYE~L~kD~s~L~k----ikWd~VIIDEAHrIKN~ 1136 (2239)
. ......+++|||++........... ..+..+|+||.|.+...
T Consensus 1015 --~--~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 --V--KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred --h--hheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 1 1223678999999887533211111 14567999999998653
No 441
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=70.49 E-value=20 Score=39.71 Aligned_cols=45 Identities=33% Similarity=0.330 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHhh--cCCCCeEEEcCCCchHHHHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWMLSLY--NNKLNGILADEMGLGKTVQVMALIAYLMEF 1046 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~--~n~lnGILADEMGLGKTIQAIALIa~Lie~ 1046 (2239)
|..|++-+.-++... ......+|.-+.|+|||...-.++..+...
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 455555555554312 233446899999999998887777766654
No 442
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=69.66 E-value=6.5 Score=50.80 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=36.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~Kw 1072 (2239)
+-+|+-+-|.|||+.+.++..... -.+.-|.|.+|..-|.-|-++.
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~------atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESG------ATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhc------ceEeeccHHHhhhhccChHHHH
Confidence 448999999999999988886543 2567788999999997776553
No 443
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=69.63 E-value=26 Score=44.13 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh
Q 000101 1036 VMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR 1114 (2239)
Q Consensus 1036 AIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~ 1114 (2239)
...++.++-.......|+||.+|.- ++.+...-+++-+|...+...+.....|.+....++.+.++++|||- +.. +
T Consensus 291 ~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT--ILE-R 367 (441)
T COG4098 291 PLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTT--ILE-R 367 (441)
T ss_pred CHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEee--hhh-c
Confidence 4566777776677778999999976 67777777878889988888888888899999999999999999984 221 1
Q ss_pred hhcccCCceEEEecccccccC
Q 000101 1115 SKLSKVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1115 s~L~kikWd~VIIDEAHrIKN 1135 (2239)
. +.--+.++.||+--|++-.
T Consensus 368 G-VTfp~vdV~Vlgaeh~vfT 387 (441)
T COG4098 368 G-VTFPNVDVFVLGAEHRVFT 387 (441)
T ss_pred c-cccccceEEEecCCccccc
Confidence 1 1122578899998888754
No 444
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=69.61 E-value=22 Score=48.37 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=67.4
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHH----HHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY----LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1399 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~----L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~Vf 1399 (2239)
..|||..+..-.+......|.++||.+.....+.-+.+. |...|+++..++|+++..+|..+++....++. .|+
T Consensus 265 TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~--~Ii 342 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQI--HLV 342 (630)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCC--CEE
Confidence 357888765433333445688999999888776655444 44458999999999999999999999886444 454
Q ss_pred EEeccccccccCCCcCceEEEcC
Q 000101 1400 LLSIRAAGRGLNLQSADTVIIYD 1422 (2239)
Q Consensus 1400 LLSTrAGGeGLNLqaADtVIifD 1422 (2239)
+.+....-..+.+....+||+=.
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDE 365 (630)
T ss_pred EecHHHHhccccccccceEEEec
Confidence 44444444567777787777633
No 445
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=68.67 E-value=11 Score=51.47 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=66.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
.|-+-|.++|.+. ....++....|+|||.+.+.-+++|+...+ ....+|+|+-+. ........+.+.++.
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~-- 73 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGR-- 73 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCc--
Confidence 4778899988642 234566677999999999999999997533 345689999866 344444444443321
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----hhcccCCceEEEeccccc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQR 1132 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s~L~kikWd~VIIDEAHr 1132 (2239)
...-.|.|.|+..+.... .....+.-.+.|+|+...
T Consensus 74 -------------------~~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 74 -------------------KEARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred -------------------ccccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 001247788888875331 111112334567887653
No 446
>PRK14873 primosome assembly protein PriA; Provisional
Probab=68.33 E-value=23 Score=48.60 Aligned_cols=95 Identities=16% Similarity=0.062 Sum_probs=74.8
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-C-CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-Q-LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1402 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-G-iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLS 1402 (2239)
.|||.+.+.+++......|+.|||...-......+...|..+ | ..+..+|+.++..+|.+.......++.. |+|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 589999999999999999999999999988888888888765 3 6788999999999999988888764444 5777
Q ss_pred ccccccccCCCcCceEEEcCC
Q 000101 1403 IRAAGRGLNLQSADTVIIYDP 1423 (2239)
Q Consensus 1403 TrAGGeGLNLqaADtVIifDp 1423 (2239)
|+.+-. +-+.+-..||+-|-
T Consensus 247 tRSAvF-aP~~~LgLIIvdEE 266 (665)
T PRK14873 247 TRSAVF-APVEDLGLVAIWDD 266 (665)
T ss_pred cceeEE-eccCCCCEEEEEcC
Confidence 777543 33444555666543
No 447
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=68.21 E-value=24 Score=39.89 Aligned_cols=55 Identities=24% Similarity=0.151 Sum_probs=35.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechHHHHHHHHHHHHHC
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNAVLVNWKSELHKWL 1073 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k-------~~~GP~LIVVP~SLLsQW~~Ef~Kwa 1073 (2239)
+.-++++...|+|||..++.++..+..-. ...+++|+|....-..++..-+..+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 34468889999999999999988877411 14567888886555555555555544
No 448
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=68.02 E-value=20 Score=47.64 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=20.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
..+.||.-+.|+|||..+-++...+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 35678999999999998877776653
No 449
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=67.86 E-value=24 Score=45.65 Aligned_cols=39 Identities=15% Similarity=0.373 Sum_probs=27.2
Q ss_pred CceEEEecccccccCh---hhHHHHHhhccc-cceEEEecC--CC
Q 000101 1121 DWKYIIIDEAQRMKDR---ESVLARDLDRYR-CQRRLLLTG--TP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~---~SKlskaLk~Lk-a~rRLLLTG--TP 1159 (2239)
..++++||..+.+.+. .-.+...++.+. ....|+||+ +|
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P 219 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPP 219 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 6789999999999765 334555555553 334788888 55
No 450
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=67.61 E-value=13 Score=51.30 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
.|-|-|.++|.+. ....++...-|+|||.+.+.-|++|+...+ ....+|+|+-+. ........+.+.++.
T Consensus 9 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~-- 80 (721)
T PRK11773 9 SLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT-- 80 (721)
T ss_pred hcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhcc--
Confidence 4889999998632 234566667999999999999999997433 334588888765 444444445443321
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----hhcccCCceEEEecccc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQ 1131 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s~L~kikWd~VIIDEAH 1131 (2239)
....+.|.|+..+.... .......-.+.|+|+..
T Consensus 81 --------------------~~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 118 (721)
T PRK11773 81 --------------------SQGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDD 118 (721)
T ss_pred --------------------CCCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 11257788888876431 11112233456788764
No 451
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=66.84 E-value=13 Score=44.67 Aligned_cols=48 Identities=19% Similarity=-0.009 Sum_probs=32.0
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1009 LqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
|+.++.-+..+.-.+|+...|+|||..++.++..+.... ..++|++.-
T Consensus 20 Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~ 67 (271)
T cd01122 20 LNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISL 67 (271)
T ss_pred eeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEc
Confidence 333333333445568999999999999988887776421 346777773
No 452
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=66.24 E-value=31 Score=49.72 Aligned_cols=127 Identities=17% Similarity=0.074 Sum_probs=71.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCce
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkv 1078 (2239)
..|-+-|..++..+.. .+.-++|.-.-|+|||.+.-+++ .+++.. ...++.++|+..... .+.+-+ ++.
T Consensus 380 ~~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l~~~~-~~~e~~--G~~V~g~ApTgkAA~---~L~e~~-Gi~- 448 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMMKAAR-EAWEAA--GYRVVGGALAGKAAE---GLEKEA-GIQ- 448 (1102)
T ss_pred CCCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHHHHHH-HHHHHc--CCeEEEEcCcHHHHH---HHHHhh-CCC-
Confidence 4799999999987642 23335777889999997765544 344322 346778889875432 222211 010
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHH-Hh-hhhcccCCceEEEecccccccChhhHHHHHhhcc-ccceEEEe
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIM-YD-RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLL 1155 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~-kD-~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~rRLLL 1155 (2239)
-.|...+. .. .....-..-++||||||..+-. ..+...|... ....+|+|
T Consensus 449 -------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~--~~m~~Ll~~~~~~garvVL 501 (1102)
T PRK13826 449 -------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS--RQMALFVEAVTRAGAKLVL 501 (1102)
T ss_pred -------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccCCH--HHHHHHHHHHHhcCCEEEE
Confidence 01111110 00 0000112356999999998742 2333444444 35679999
Q ss_pred cCCCCCCC
Q 000101 1156 TGTPLQND 1163 (2239)
Q Consensus 1156 TGTPIQNn 1163 (2239)
.|-|-|-.
T Consensus 502 VGD~~QL~ 509 (1102)
T PRK13826 502 VGDPEQLQ 509 (1102)
T ss_pred ECCHHHcC
Confidence 99886543
No 453
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=65.75 E-value=6.6 Score=45.56 Aligned_cols=41 Identities=32% Similarity=0.375 Sum_probs=25.4
Q ss_pred CCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCCC
Q 000101 1120 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1163 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNn 1163 (2239)
...+++||||+..+-. .. +.- |........++|-|-|.|-.
T Consensus 61 ~~~~~liiDE~~~~~~-g~-l~~-l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPP-GY-LLL-LLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred CcCCEEEEeccccCCh-HH-HHH-HHhhccCcceEEEECchhcc
Confidence 3589999999998742 11 111 33333334577779887764
No 454
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=65.17 E-value=20 Score=44.01 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=25.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
..+|+-.+|+|||.++..++.++....+. ..+.||.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~ 231 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALIT 231 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEE
Confidence 44678899999999998888877643222 3455555
No 455
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=65.12 E-value=24 Score=47.99 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=55.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHH----HHHHHHHHCCCCceEEEecchhhHHHHHHHHhh
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVN----WKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAA 1097 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQ----W~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~ 1097 (2239)
+++-.==-|||..+..+|..++... ..-.+++++|.. +... ...-+++|++...+....|.. . .+ .+..
T Consensus 258 VflVPRR~GKTwivv~iI~~ll~s~-~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-I---~i-~f~n 331 (738)
T PHA03368 258 VFLVPRRHGKTWFLVPLIALALATF-RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-I---SF-SFPD 331 (738)
T ss_pred EEEecccCCchhhHHHHHHHHHHhC-CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-E---EE-EecC
Confidence 4444567899998887776665422 234678888844 3333 444456787654433333311 0 00 0111
Q ss_pred cC-ccEEEEehhHHHHhhhhcccCCceEEEecccccccC
Q 000101 1098 LK-FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1098 ~k-fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN 1135 (2239)
+. ..|.+.|- +....+....++++|||||+.++.
T Consensus 332 G~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 332 GSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred CCccEEEEEec----cCCCCccCCcccEEEEechhhCCH
Confidence 11 12333211 222345556899999999999974
No 456
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=64.93 E-value=32 Score=44.42 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=28.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~ 1066 (2239)
..+.+|.-+.|+|||..+-++...+ ..+++.|....++..|.
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~~k~~ 220 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFVQKYL 220 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHHHHhc
Confidence 4567899999999998886665432 24566666655555443
No 457
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=64.91 E-value=22 Score=47.77 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=59.6
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-----HHHHHHHHHHHHCCCCceEEEecchhhHHH
Q 000101 1016 YNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-----VLVNWKSELHKWLPSVSCIYYVGAKDQRSR 1090 (2239)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-----LLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~ 1090 (2239)
+.++-.+.|. +=--|||...+.+|..++..- ..-.+..|+=-. +.......+.+|+|.-.++...++.-.-.
T Consensus 200 FKQkaTVFLV-PRRHGKTWf~VpiIsllL~s~-~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~~s- 276 (668)
T PHA03372 200 FKQKATVFLV-PRRHGKTWFIIPIISFLLKNI-IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVISID- 276 (668)
T ss_pred hhccceEEEe-cccCCceehHHHHHHHHHHhh-cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEEEe-
Confidence 3344444443 456799999999998887622 223566676432 34446666889998755433222100000
Q ss_pred HHHHHhhcCccEEEEe-hhHHHHhhhhcccCCceEEEecccccccC
Q 000101 1091 LFSQVAALKFNVLVTT-YEFIMYDRSKLSKVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1091 l~~~i~~~kfdVVITT-YE~L~kD~s~L~kikWd~VIIDEAHrIKN 1135 (2239)
....+.-++..| ++ ...+..-.|++++|||||-++-
T Consensus 277 ----~pg~Kst~~fasc~n-----~NsiRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 277 ----HRGAKSTALFASCYN-----TNSIRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred ----cCCCcceeeehhhcc-----CccccCCCCCEEEEehhhccCH
Confidence 000011122222 22 2345556899999999999963
No 458
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=64.63 E-value=36 Score=50.62 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=41.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAVLV 1063 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~-k~~~GP~LIVVP~SLLs 1063 (2239)
.|-+-|.+++..++.-. +.-.+|--.-|+|||.+.-+++..+... ......++.++|+.-..
T Consensus 835 ~Lt~~Qr~Av~~iLts~--dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 835 KLTSGQRAATRMILETS--DRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV 897 (1623)
T ss_pred ccCHHHHHHHHHHHhCC--CceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH
Confidence 68899999998877521 2346788889999998865554433221 12223567788987544
No 459
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=64.59 E-value=19 Score=46.22 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=27.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW 1065 (2239)
.+.||.-+.|+|||..+-++...+ ..+++.|....++..|
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVQKF 205 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHHHhHhh
Confidence 456899999999998887765432 2356666555555444
No 460
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=64.36 E-value=74 Score=39.17 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=23.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
++.-..|.|||.++..+..++.. . ...++||.
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~-~--g~~V~li~ 107 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKK-Q--GKSVLLAA 107 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHh-c--CCEEEEEe
Confidence 56689999999999888877653 2 24566665
No 461
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=64.19 E-value=23 Score=49.01 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=24.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 1063 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs 1063 (2239)
.+.+|.-+.|+|||..+-++...+ ..+++.|....++.
T Consensus 213 ~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEIMS 250 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHHhc
Confidence 456899999999997765554322 23555555554443
No 462
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=63.64 E-value=26 Score=44.29 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=26.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW 1065 (2239)
.+.+|..+.|+|||..+-++...+ ..+++-|+...++..|
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~l------~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVRKY 196 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhC------CCCEEecchHHHHHHh
Confidence 456899999999998887765432 2345555544444433
No 463
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=63.24 E-value=35 Score=48.49 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=69.9
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEE
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1400 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~----rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfL 1400 (2239)
.+||..+....+-.....+.+|+|.+..+..+.-+...|.. .++++..++|.++..++.++++.+..+. +.|++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~--~dIVI 559 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK--IDILI 559 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC--ceEEE
Confidence 57898776655444455688999999999888777666554 3678888999999999999999998643 44544
Q ss_pred EeccccccccCCCcCceEEEc
Q 000101 1401 LSIRAAGRGLNLQSADTVIIY 1421 (2239)
Q Consensus 1401 LSTrAGGeGLNLqaADtVIif 1421 (2239)
.+.......+.+....+||+=
T Consensus 560 GTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred chHHHhhCCCCcccCCEEEee
Confidence 454455556778888877763
No 464
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.12 E-value=68 Score=41.62 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=29.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chH--HHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNA--VLVNWKSE 1068 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV--P~S--LLsQW~~E 1068 (2239)
..+|+...|+|||-++..+..++.. . ..++.+|+ |-. .+.||..-
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~-~--g~~V~lItaDtyR~gAveQLk~y 256 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLK-Q--NRTVGFITTDTFRSGAVEQFQGY 256 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-c--CCeEEEEeCCccCccHHHHHHHH
Confidence 3467889999999988888776643 2 23555555 322 36677553
No 465
>CHL00176 ftsH cell division protein; Validated
Probab=62.93 E-value=44 Score=45.79 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=18.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa 1041 (2239)
.+.||.-+.|+|||..+=++..
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999988877754
No 466
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=62.30 E-value=29 Score=42.95 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=25.8
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
.+.++|||++|++.. ....+.+.|..-+....++|+++
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 789999999999943 23345556665555556666554
No 467
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=62.12 E-value=65 Score=44.97 Aligned_cols=151 Identities=14% Similarity=0.112 Sum_probs=75.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-h-H--HHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhc
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-N-A--VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP-~-S--LLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
.|...+|.|||.++.-+...+....+. ..+.||+- + . .+.||..-.... .+-++
T Consensus 189 ~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~Dt~RigA~eQL~~~a~~~----gvpv~----------------- 246 (767)
T PRK14723 189 ALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTTDSFRIGALEQLRIYGRIL----GVPVH----------------- 246 (767)
T ss_pred EEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecCcccchHHHHHHHHHHHhC----CCCcc-----------------
Confidence 688999999998877776665433332 24444442 2 1 345553222111 11111
Q ss_pred CccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-----ccceEEEecCCCCCCCHHHHHHHHhh
Q 000101 1099 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWSLLNL 1173 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-----ka~rRLLLTGTPIQNnL~ELwsLLnF 1173 (2239)
++.+...+.+....+. .+++||||=+=+.-+... +...+..+ .....|.|++|--...+.++..-|+.
T Consensus 247 ----~~~~~~~l~~al~~~~--~~D~VLIDTAGRs~~d~~-l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~ 319 (767)
T PRK14723 247 ----AVKDAADLRFALAALG--DKHLVLIDTVGMSQRDRN-VSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRH 319 (767)
T ss_pred ----ccCCHHHHHHHHHHhc--CCCEEEEeCCCCCccCHH-HHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhh
Confidence 1123333322223332 457888888776643222 33333322 23345667888655556666655543
Q ss_pred h---cCc-----------ccCChHHHHhhhcCCcccCCCCCCC
Q 000101 1174 L---LPE-----------VFDNRKAFHDWFSQPFQKEGPTHNA 1202 (2239)
Q Consensus 1174 L---lP~-----------iF~s~k~F~e~F~kPf~~~g~~~~~ 1202 (2239)
+ .+. -++..-.+...+..|+...+.....
T Consensus 320 ~~~~~i~glIlTKLDEt~~~G~iL~i~~~~~lPI~yit~GQ~V 362 (767)
T PRK14723 320 GAGEDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQKV 362 (767)
T ss_pred cccCCCCEEEEeccCCCCCccHHHHHHHHHCCCeEEEecCCCC
Confidence 2 111 1333445566677777766554443
No 468
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=62.01 E-value=3e+02 Score=38.87 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=18.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIAYL 1043 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~L 1043 (2239)
..+|.-..|+|||..+-++...+
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999998876666544
No 469
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.81 E-value=89 Score=40.93 Aligned_cols=79 Identities=14% Similarity=0.051 Sum_probs=45.5
Q ss_pred CceEEEecccccccChhhHHHHHhhcc-----ccceEEEecCCCCCCCHHHHHHHHhhhcCc-----------ccCChHH
Q 000101 1121 DWKYIIIDEAQRMKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWSLLNLLLPE-----------VFDNRKA 1184 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~~SKlskaLk~L-----ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~-----------iF~s~k~ 1184 (2239)
.+++|+||.+=+..+ ...+...|..+ .....|.|++|--.+.+.+++..+..+... .++..-.
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TKlDEt~~~G~~l~ 347 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALD 347 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeeeCCCCccHHHH
Confidence 567888888644432 12233333333 234467789997777787777776655442 1344445
Q ss_pred HHhhhcCCcccCCCCC
Q 000101 1185 FHDWFSQPFQKEGPTH 1200 (2239)
Q Consensus 1185 F~e~F~kPf~~~g~~~ 1200 (2239)
+...+..|+...+...
T Consensus 348 ~~~~~~lPi~yvt~Gq 363 (420)
T PRK14721 348 AVIRRKLVLHYVTNGQ 363 (420)
T ss_pred HHHHhCCCEEEEECCC
Confidence 5556667776654433
No 470
>PRK06904 replicative DNA helicase; Validated
Probab=61.78 E-value=5.2e+02 Score=34.53 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceE-EEec-
Q 000101 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI-YYVG- 1083 (2239)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvv-vy~G- 1083 (2239)
...|+.+..-+..+.=.|||.-+|.|||.-++.++...... ...++||+...--..++...+......+... +..|
T Consensus 208 ~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~ 285 (472)
T PRK06904 208 FTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQ 285 (472)
T ss_pred hHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCC
Confidence 34455555444444445899999999998887777655432 2458888886655555555443332222111 1122
Q ss_pred --chhhHHHHHHHHhh--cCccEEEE-----ehhHHHHhhhhc-cc-CCceEEEeccccccc
Q 000101 1084 --AKDQRSRLFSQVAA--LKFNVLVT-----TYEFIMYDRSKL-SK-VDWKYIIIDEAQRMK 1134 (2239)
Q Consensus 1084 --skd~Rk~l~~~i~~--~kfdVVIT-----TYE~L~kD~s~L-~k-ikWd~VIIDEAHrIK 1134 (2239)
+..+..++...... ...++.|. |...+......+ .. ...++||||=-|.|.
T Consensus 286 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 286 NLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 12222222211111 12335553 333443322222 22 257899999888875
No 471
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=60.90 E-value=45 Score=50.27 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVLV 1063 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-~~~GP~LIVVP~SLLs 1063 (2239)
.|-+-|.+++..++.- ...-.+|.---|+|||.+.-+++..+.... .....++.++|+.-..
T Consensus 967 ~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 967 GLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 6889999999888751 123457888899999987655554433211 1223467778987544
No 472
>PRK10867 signal recognition particle protein; Provisional
Probab=60.44 E-value=81 Score=41.42 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=24.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
.+++-..|+|||.+++-++.++.... . .++++|+
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~-G-~kV~lV~ 136 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKK-K-KKVLLVA 136 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhc-C-CcEEEEE
Confidence 36788999999999988888876531 2 3455555
No 473
>PRK10263 DNA translocase FtsK; Provisional
Probab=60.02 E-value=17 Score=52.34 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=29.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA 1060 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k-~~~GP~LIVVP~S 1060 (2239)
.+.|+|-.+|+|||...-++|+.++... ...-.+++|=|+.
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 4679999999999999988888776532 2233455555764
No 474
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=60.01 E-value=75 Score=40.03 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=23.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
+|.-..|.|||.++..+..++.. ..+.++|+.
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~---~g~~V~Li~ 149 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKA---QGKKVLLAA 149 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHh---cCCeEEEEe
Confidence 56679999999988887776653 234666665
No 475
>PF05729 NACHT: NACHT domain
Probab=59.73 E-value=24 Score=38.18 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=20.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHh
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFK 1047 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k 1047 (2239)
.+|..+.|.|||..+..++..+....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcC
Confidence 36778899999999888877776543
No 476
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=59.23 E-value=44 Score=38.23 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=67.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHHHCCCCceEEEecch----hhHHHHHHHHh
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHKWLPSVSCIYYVGAK----DQRSRLFSQVA 1096 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV--P~SLLsQW~~Ef~KwaPslkvvvy~Gsk----d~Rk~l~~~i~ 1096 (2239)
.+.-..|.|||-.|+++...... ...+++||= -.. ...=...+-+.+|++.+..+.... ..........
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~---~g~~v~~vQFlKg~-~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a- 80 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALG---HGYRVGVVQFLKGG-WKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA- 80 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEEeCCC-CccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH-
Confidence 34566799999999988876653 233556531 110 000011222333544433322110 0111100000
Q ss_pred hcCccEEEEehhHHHHhhhhcccCCceEEEecccccccC----hhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHh
Q 000101 1097 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLN 1172 (2239)
Q Consensus 1097 ~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN----~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLn 1172 (2239)
.+.+......+....+++|||||.=...+ ....+...|..-+...-++|||-- -..+|..+.+
T Consensus 81 ----------~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~---~p~~l~e~AD 147 (159)
T cd00561 81 ----------AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRN---APKELIEAAD 147 (159)
T ss_pred ----------HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCC---CCHHHHHhCc
Confidence 01122223445566899999999876633 334566666665666689999974 3444444443
No 477
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=59.14 E-value=27 Score=41.47 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=34.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHH---------HhCCCCCeEEEe---chHHHHHHHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLME---------FKGNYGPHLIIV---PNAVLVNWKSELHKW 1072 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie---------~k~~~GP~LIVV---P~SLLsQW~~Ef~Kw 1072 (2239)
-++|+..-|+|||..++.++..... .....+++|+|+ |...+..-...+...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~ 66 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQH 66 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhh
Confidence 3689999999999999888766431 112456788888 555555444444443
No 478
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=59.07 E-value=38 Score=43.56 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=33.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKW 1072 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP-~SLLsQW~~Ef~Kw 1072 (2239)
.+.||+...|+|||+.|-|+... ++.+.+=|- ..|.+.|.-|=+|.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE-------c~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE-------CGTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh-------hcCeEEEechhhhhhhhccchHHH
Confidence 35588999999999999887753 345566555 45778898776653
No 479
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=59.04 E-value=19 Score=45.76 Aligned_cols=131 Identities=11% Similarity=0.092 Sum_probs=61.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH--HHHHHHHHHHHHCCCCceE-EEecchhhHHHHHHHHhhcC
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA--VLVNWKSELHKWLPSVSCI-YYVGAKDQRSRLFSQVAALK 1099 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S--LLsQW~~Ef~KwaPslkvv-vy~Gskd~Rk~l~~~i~~~k 1099 (2239)
++.-.-|+|||..++..+...+........+||+-+.. +-.+-..+|...++.+.+- .+......- .+ .....+
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-~i--~~~~~g 81 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-EI--KILNTG 81 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc-EE--EecCCC
Confidence 56678999999888766655443321334566666643 3334444444333221110 111000000 00 000001
Q ss_pred ccEEEEehhHHHHhhhhcccC-CceEEEecccccccChhhHHHHHhhccc---cceEEEecCCCCC
Q 000101 1100 FNVLVTTYEFIMYDRSKLSKV-DWKYIIIDEAQRMKDRESVLARDLDRYR---CQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1100 fdVVITTYE~L~kD~s~L~ki-kWd~VIIDEAHrIKN~~SKlskaLk~Lk---a~rRLLLTGTPIQ 1161 (2239)
-.|++..- ..+...+... .+++++||||..+.. ......+.+++ ...++++|.||-.
T Consensus 82 ~~i~f~g~---~d~~~~ik~~~~~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 82 KKFIFKGL---NDKPNKLKSGAGIAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred eEEEeecc---cCChhHhhCcceeeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 12222222 0112233333 358999999999842 23333333443 2235899999954
No 480
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=58.97 E-value=30 Score=40.82 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=26.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
-.+++.+.|+|||+.+..++..... ...++++|.=
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~ 61 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITT 61 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEc
Confidence 3478899999999999888766543 3457777773
No 481
>PRK06620 hypothetical protein; Validated
Probab=58.66 E-value=54 Score=38.81 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=53.8
Q ss_pred EEEec-hHHHHHHHHHHHH-HC--CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecc
Q 000101 1054 LIIVP-NAVLVNWKSELHK-WL--PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDE 1129 (2239)
Q Consensus 1054 LIVVP-~SLLsQW~~Ef~K-wa--Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDE 1129 (2239)
+||.+ +.....|..++.+ |. |....++++|....-+...........+..+++...... ..+. ..++++|||
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~--~~~~--~~d~lliDd 93 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE--EILE--KYNAFIIED 93 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch--hHHh--cCCEEEEec
Confidence 67777 5566666666664 53 212445666655444433333333344445554332221 1221 347899999
Q ss_pred cccccChhhHHHHHhhcc-ccceEEEecCCC
Q 000101 1130 AQRMKDRESVLARDLDRY-RCQRRLLLTGTP 1159 (2239)
Q Consensus 1130 AHrIKN~~SKlskaLk~L-ka~rRLLLTGTP 1159 (2239)
.|++. ...+...+..+ .....+++|+|-
T Consensus 94 i~~~~--~~~lf~l~N~~~e~g~~ilits~~ 122 (214)
T PRK06620 94 IENWQ--EPALLHIFNIINEKQKYLLLTSSD 122 (214)
T ss_pred cccch--HHHHHHHHHHHHhcCCEEEEEcCC
Confidence 99762 23444444444 345678888883
No 482
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=58.43 E-value=63 Score=39.25 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=26.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
.+++-+.|+|||+.++-++..... ...++|+|.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis 71 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVT 71 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEE
Confidence 478999999999999888776553 245788887
No 483
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=58.35 E-value=48 Score=41.94 Aligned_cols=122 Identities=19% Similarity=0.298 Sum_probs=65.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCc
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKF 1100 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kf 1100 (2239)
++.---|+|||-+..-+..++.. ....+||.+=-.--.--.+.+.-|...+.+-+..+. .+.-.-
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~---~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaV---------- 209 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQ---QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAV---------- 209 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHH---CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHH----------
Confidence 55677899999776556555543 233555555333333344556666644444443321 110000
Q ss_pred cEEEEehhHHHHhhhhcccCCceEEEecccccccChhh------HHHHHhhcc--ccceEEE--ecCCCCCCCHHH
Q 000101 1101 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES------VLARDLDRY--RCQRRLL--LTGTPLQNDLKE 1166 (2239)
Q Consensus 1101 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~S------KlskaLk~L--ka~rRLL--LTGTPIQNnL~E 1166 (2239)
-|+. ...-...++++||||=|-|+-|... ++.+.+... .+++.++ |=||-=||.+.-
T Consensus 210 -----afDA----i~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 210 -----AFDA----IQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred -----HHHH----HHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 1111 2233345899999999999966433 444444433 2344444 458877776554
No 484
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=58.26 E-value=1.3e+02 Score=33.66 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=19.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
.++....|+|||..+..++..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 367789999999999888877664
No 485
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=58.12 E-value=45 Score=39.93 Aligned_cols=38 Identities=34% Similarity=0.481 Sum_probs=27.0
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHH
Q 000101 1028 MGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSE 1068 (2239)
Q Consensus 1028 MGLGKTIQAIALIa~Lie~k~~~GP~LIVV--P~SLLsQW~~E 1068 (2239)
=|.|||..++.+..++.. .+ .+++||- |...+..|...
T Consensus 11 GGvGKTT~a~nLA~~la~-~G--~~VlliD~DpQ~s~~~w~~~ 50 (231)
T PRK13849 11 GGAGKTTALMGLCAALAS-DG--KRVALFEADENRPLTRWKEN 50 (231)
T ss_pred CCccHHHHHHHHHHHHHh-CC--CcEEEEeCCCCCCHHHHHHh
Confidence 389999999988888764 22 3566664 66677788753
No 486
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=57.51 E-value=24 Score=48.66 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=66.2
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEE
Q 000101 1323 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1401 (2239)
Q Consensus 1323 i~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLL 1401 (2239)
+..|||.+++..++.+..+.|+.|||-..-.....-+...|+.+ |.++..+|++.+..+|...-.+...++. +| +|
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~--~v-VI 301 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA--RV-VI 301 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc--eE-EE
Confidence 46799999999999999999999999988877777777777655 7889999999999999998888886444 44 55
Q ss_pred ecccc
Q 000101 1402 SIRAA 1406 (2239)
Q Consensus 1402 STrAG 1406 (2239)
-|+.+
T Consensus 302 GtRSA 306 (730)
T COG1198 302 GTRSA 306 (730)
T ss_pred Eechh
Confidence 55543
No 487
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=57.33 E-value=26 Score=40.34 Aligned_cols=43 Identities=33% Similarity=0.326 Sum_probs=29.6
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000101 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2239)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL 1062 (2239)
.++.|.+|...+|+|||..+++++..++. ++ .+++++.-..++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g--~~v~f~~~~~L~ 87 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR-KG--YSVLFITASDLL 87 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT----EEEEEHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CC--cceeEeecCcee
Confidence 34667789999999999999999988876 22 356666544444
No 488
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=57.19 E-value=52 Score=44.03 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=90.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCC------eEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechH-HHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLN------GILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNA-VLVNWKSELH 1070 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~ln------GILADEMGLGKTIQAIALIa~Lie~-k~~~GP~LIVVP~S-LLsQW~~Ef~ 1070 (2239)
..|-|||...+.-+.-.++..-+ +++.-.=|=|||-.+.+++.++.-. ....-.++|++|.- ...+-..++.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar 139 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPAR 139 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHH
Confidence 47999999999888877765544 3677788999997776666554322 23334677777765 3334333333
Q ss_pred HHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhH-------HHHhhhhcccCCceEEEecccccccChhhHHHHH
Q 000101 1071 KWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEF-------IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARD 1143 (2239)
Q Consensus 1071 KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~-------L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlska 1143 (2239)
.-+-... +.+. ........+. +++.. +..+...+...+..++|+||-|...+.. ..+..
T Consensus 140 ~mv~~~~--------~l~~----~~~~q~~s~~-i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-~~~~~ 205 (546)
T COG4626 140 DMVKRDD--------DLRD----LCNVQTHSRT-ITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-DMYSE 205 (546)
T ss_pred HHHHhCc--------chhh----hhccccceeE-EEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-HHHHH
Confidence 2221111 0000 0111111112 22211 1233456677789999999999998876 44433
Q ss_pred hh-cc---ccceEEEe--cCCCCCCCHHHHHHHHhhhcCcccCC
Q 000101 1144 LD-RY---RCQRRLLL--TGTPLQNDLKELWSLLNLLLPEVFDN 1181 (2239)
Q Consensus 1144 Lk-~L---ka~rRLLL--TGTPIQNnL~ELwsLLnFLlP~iF~s 1181 (2239)
+. .+ +....+.. +|-|...-+.+-+..+.-++.+...+
T Consensus 206 ~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~vl~g~~~d 249 (546)
T COG4626 206 AKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVLDGKIKD 249 (546)
T ss_pred HHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHHhcCCcCC
Confidence 33 33 22233333 33444444444444444444444443
No 489
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=56.64 E-value=2.3e+02 Score=36.91 Aligned_cols=52 Identities=17% Similarity=0.045 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000101 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2239)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~ 1059 (2239)
..+|+-++.-+..+.-.+|+...|.|||..++.++....... ..++|++...
T Consensus 182 ~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlE 233 (434)
T TIGR00665 182 FTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLE 233 (434)
T ss_pred chhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCc
Confidence 344555543333343458999999999999988887765422 2478888743
No 490
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.27 E-value=29 Score=44.40 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=53.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCccE
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNV 1102 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdV 1102 (2239)
+++-=-|.|||-++.-+..|+. +..+.+.||.+-+- -.--...+..|+-...+-+|....+...-
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~k--kkG~K~~LvcaDTF-RagAfDQLkqnA~k~~iP~ygsyte~dpv------------ 169 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYK--KKGYKVALVCADTF-RAGAFDQLKQNATKARVPFYGSYTEADPV------------ 169 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHH--hcCCceeEEeeccc-ccchHHHHHHHhHhhCCeeEecccccchH------------
Confidence 4566689999988776666654 44555555555332 12223445555544455555432111000
Q ss_pred EEEehhHHHHhhhhcccCCceEEEecccccccChhhHH
Q 000101 1103 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 1140 (2239)
Q Consensus 1103 VITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKl 1140 (2239)
.....-...+.+.+|++||+|=+-|.+-..+..
T Consensus 170 -----~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLf 202 (483)
T KOG0780|consen 170 -----KIASEGVDRFKKENFDVIIVDTSGRHKQEASLF 202 (483)
T ss_pred -----HHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHH
Confidence 001122355677788999999888876544443
No 491
>PRK10689 transcription-repair coupling factor; Provisional
Probab=56.25 E-value=56 Score=47.64 Aligned_cols=95 Identities=9% Similarity=0.054 Sum_probs=68.2
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1399 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~----rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~Vf 1399 (2239)
..+||..+....+-.....+.+|||.+..+..+.-+...|.. .++.+..++|..+..++..+++....+. +.|+
T Consensus 630 TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~--~dIV 707 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK--IDIL 707 (1147)
T ss_pred CCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC--CCEE
Confidence 357898765554444456789999999999887776666653 2567778999999999999999887543 4455
Q ss_pred EEeccccccccCCCcCceEEE
Q 000101 1400 LLSIRAAGRGLNLQSADTVII 1420 (2239)
Q Consensus 1400 LLSTrAGGeGLNLqaADtVIi 1420 (2239)
+.+.......+++...+.||+
T Consensus 708 VgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEE
Confidence 555455555677778888776
No 492
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=56.16 E-value=51 Score=43.12 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=24.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
.+++-..|+|||.++..++.++.... . .++++|+
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~-g-~kV~lV~ 135 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQ-G-KKVLLVA 135 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC-C-CeEEEEe
Confidence 47889999999999988888875322 2 3455554
No 493
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=56.12 E-value=60 Score=38.78 Aligned_cols=44 Identities=7% Similarity=0.006 Sum_probs=30.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec----hHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP----NAVLVNW 1065 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP----~SLLsQW 1065 (2239)
+.-.+|..+.|+|||..++.++..+.. . ..+++.|+. ..++.+|
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~-~--g~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ-N--GYSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh-C--CCcEEEEeCCCCHHHHHHHH
Confidence 445688999999999998888877653 2 246677764 3455554
No 494
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=55.82 E-value=34 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=17.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa 1041 (2239)
.+.||.-+.|+|||..+-++..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3569999999999977765553
No 495
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.62 E-value=1.1e+02 Score=38.81 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
|...+..+...+.++ .+-||..+.|+|||..+-++...+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444455555544433 2357899999999988877755443
No 496
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=55.58 E-value=29 Score=42.04 Aligned_cols=49 Identities=20% Similarity=0.107 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
++....++.++.....+...+|..+.|+|||..|.++...+ ..+++.|+
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 45566666677666778888999999999998887765422 34666664
No 497
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=55.55 E-value=11 Score=45.13 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.7
Q ss_pred CeEEEcCCCchHHHHH
Q 000101 1021 NGILADEMGLGKTVQV 1036 (2239)
Q Consensus 1021 nGILADEMGLGKTIQA 1036 (2239)
+.||.-..|+|||-.|
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5799999999999555
No 498
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=55.46 E-value=33 Score=45.03 Aligned_cols=103 Identities=15% Similarity=0.072 Sum_probs=58.6
Q ss_pred HHHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecc
Q 000101 1006 IVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084 (2239)
Q Consensus 1006 leGLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gs 1084 (2239)
..+++.++. -+..+.-.+|+-+.|+|||..++.++..+.. ..+++|+|.-.....++.....++.-...
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs~~qi~~ra~rlg~~~~------- 149 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEESLQQIKMRAIRLGLPEP------- 149 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCCHHHHHHHHHHcCCChH-------
Confidence 455666553 1222223488999999999998888776653 23578888876555665554444321100
Q ss_pred hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEeccccccc
Q 000101 1085 KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 1134 (2239)
Q Consensus 1085 kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIK 1134 (2239)
++.+.....+..-...+...+.++||||..+.+.
T Consensus 150 ----------------~l~~~~e~~~~~I~~~i~~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 150 ----------------NLYVLSETNWEQICANIEEENPQACVIDSIQTLY 183 (454)
T ss_pred ----------------HeEEcCCCCHHHHHHHHHhcCCcEEEEecchhhc
Confidence 1111111111122233455678999999988763
No 499
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=55.36 E-value=22 Score=45.95 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=17.2
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 000101 1018 NKLNGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa 1041 (2239)
.+..++|..+.|+|||..+..+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~ 190 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQ 190 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHH
Confidence 455678888899999976554433
No 500
>PTZ00293 thymidine kinase; Provisional
Probab=55.27 E-value=72 Score=38.14 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=23.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S 1060 (2239)
++.-.|++|||...|-.+..+. -...+++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~---~ag~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFT---YSEKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHH---HcCCceEEEEecc
Confidence 6788999999976655544333 2345788888854
Done!