Query 000101
Match_columns 2239
No_of_seqs 687 out of 3283
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 15:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 2.4E-75 8.1E-80 766.7 33.4 466 988-1516 224-712 (800)
2 1z3i_X Similar to RAD54-like; 100.0 9.9E-71 3.4E-75 707.8 36.4 466 999-1512 54-552 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 1.3E-65 4.5E-70 636.8 34.2 444 993-1512 31-477 (500)
4 3dmq_A RNA polymerase-associat 100.0 1.2E-46 4.1E-51 503.5 34.3 430 999-1468 152-631 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 4.9E-43 1.7E-47 422.0 31.0 427 1000-1453 9-473 (494)
6 2fwr_A DNA repair protein RAD2 100.0 4.5E-38 1.6E-42 387.7 22.3 357 998-1453 91-452 (472)
7 4a2p_A RIG-I, retinoic acid in 100.0 4.5E-36 1.5E-40 373.4 34.4 413 999-1453 6-506 (556)
8 3tbk_A RIG-I helicase domain; 100.0 1.1E-35 3.8E-40 368.7 32.6 429 999-1453 3-505 (555)
9 4a2q_A RIG-I, retinoic acid in 100.0 1.5E-35 5.1E-40 389.5 32.8 414 998-1453 246-747 (797)
10 1z5z_A Helicase of the SNF2/RA 100.0 7.5E-37 2.6E-41 356.4 17.5 236 1226-1512 12-248 (271)
11 4a2w_A RIG-I, retinoic acid in 100.0 5.5E-35 1.9E-39 390.3 30.3 415 998-1453 246-747 (936)
12 2ykg_A Probable ATP-dependent 100.0 2.1E-33 7.3E-38 361.5 30.1 420 999-1453 12-514 (696)
13 2oca_A DAR protein, ATP-depend 100.0 2.5E-33 8.7E-38 348.7 28.6 337 1000-1453 113-456 (510)
14 4gl2_A Interferon-induced heli 100.0 5.4E-33 1.8E-37 357.9 25.2 395 999-1441 6-509 (699)
15 1xti_A Probable ATP-dependent 100.0 1.9E-31 6.6E-36 317.6 31.9 316 1000-1451 30-355 (391)
16 3h1t_A Type I site-specific re 100.0 3.6E-32 1.2E-36 345.4 25.1 353 998-1452 176-558 (590)
17 1s2m_A Putative ATP-dependent 100.0 7.6E-31 2.6E-35 314.4 31.3 312 1000-1450 43-362 (400)
18 2j0s_A ATP-dependent RNA helic 100.0 9.8E-31 3.3E-35 314.9 29.8 315 1000-1451 59-381 (410)
19 1hv8_A Putative ATP-dependent 100.0 5.7E-31 2E-35 309.4 26.5 307 1000-1451 28-343 (367)
20 3eiq_A Eukaryotic initiation f 100.0 1.6E-30 5.4E-35 312.1 24.0 316 999-1450 61-384 (414)
21 3pey_A ATP-dependent RNA helic 100.0 1.7E-29 5.9E-34 299.7 31.6 313 1000-1451 27-354 (395)
22 2db3_A ATP-dependent RNA helic 100.0 3.7E-29 1.3E-33 307.4 32.5 312 1000-1450 78-404 (434)
23 2z0m_A 337AA long hypothetical 100.0 2E-29 6.9E-34 293.4 26.3 298 1000-1451 16-321 (337)
24 3hgt_A HDA1 complex subunit 3; 100.0 3.4E-30 1.2E-34 305.5 19.9 202 1239-1453 20-235 (328)
25 2i4i_A ATP-dependent RNA helic 100.0 8.5E-29 2.9E-33 297.8 31.8 314 999-1450 36-380 (417)
26 1fuu_A Yeast initiation factor 100.0 1.5E-30 5.2E-35 309.7 14.5 314 999-1450 42-363 (394)
27 3fht_A ATP-dependent RNA helic 100.0 3E-28 1E-32 291.7 30.8 314 999-1450 46-376 (412)
28 3oiy_A Reverse gyrase helicase 100.0 2.1E-27 7.2E-32 287.9 29.3 303 999-1452 20-362 (414)
29 3sqw_A ATP-dependent RNA helic 100.0 8.4E-27 2.9E-31 296.1 34.3 324 1000-1451 43-396 (579)
30 1oyw_A RECQ helicase, ATP-depe 100.0 1.7E-27 5.9E-32 300.2 27.5 305 999-1450 24-340 (523)
31 3i5x_A ATP-dependent RNA helic 100.0 1.7E-26 5.9E-31 290.8 33.8 324 1000-1451 94-447 (563)
32 2v1x_A ATP-dependent DNA helic 99.9 1.7E-26 5.9E-31 295.2 28.5 308 999-1450 43-371 (591)
33 2eyq_A TRCF, transcription-rep 99.9 5.1E-26 1.7E-30 309.2 28.9 305 999-1450 602-919 (1151)
34 3fmp_B ATP-dependent RNA helic 99.9 7.3E-27 2.5E-31 288.9 13.5 314 999-1450 113-443 (479)
35 3fho_A ATP-dependent RNA helic 99.9 1E-26 3.5E-31 291.6 14.1 314 1000-1451 141-468 (508)
36 1gm5_A RECG; helicase, replica 99.9 2.7E-25 9.2E-30 291.2 17.4 307 1000-1450 368-694 (780)
37 2xgj_A ATP-dependent RNA helic 99.9 1.5E-23 5E-28 281.8 31.2 347 998-1453 84-497 (1010)
38 2r0y_A Chromatin structure-rem 99.9 2.8E-25 9.7E-30 263.8 4.8 201 1727-2048 43-268 (311)
39 2va8_A SSO2462, SKI2-type heli 99.9 1.5E-22 5.3E-27 262.9 28.6 325 1000-1454 30-407 (715)
40 2r10_A Chromatin structure-rem 99.9 7.1E-25 2.4E-29 265.2 6.0 212 1711-2048 82-318 (361)
41 3l9o_A ATP-dependent RNA helic 99.9 1E-22 3.5E-27 275.8 26.8 348 999-1453 183-595 (1108)
42 2p6r_A Afuhel308 helicase; pro 99.9 4.7E-23 1.6E-27 267.5 22.6 316 1000-1454 25-387 (702)
43 2zj8_A DNA helicase, putative 99.9 9.9E-23 3.4E-27 265.2 23.3 315 1000-1453 23-385 (720)
44 2dat_A Possible global transcr 99.9 2.6E-23 9.1E-28 216.9 12.9 116 1928-2044 4-119 (123)
45 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 9.7E-22 3.3E-26 263.8 30.1 353 1000-1459 271-713 (1038)
46 4ddu_A Reverse gyrase; topoiso 99.9 4.7E-22 1.6E-26 269.3 27.3 277 998-1425 76-388 (1104)
47 4a4z_A Antiviral helicase SKI2 99.9 8.6E-22 2.9E-26 264.6 27.9 375 998-1452 37-489 (997)
48 3uv5_A Transcription initiatio 99.9 1.1E-23 3.6E-28 245.6 8.0 199 1730-2046 30-239 (265)
49 3mb4_A Protein polybromo-1; PB 99.9 5.6E-23 1.9E-27 214.7 11.1 117 1928-2045 6-122 (124)
50 3iu5_A Protein polybromo-1; PB 99.9 4.4E-23 1.5E-27 213.1 9.7 112 1934-2046 2-113 (116)
51 3mqm_A Probable histone-lysine 99.9 1.4E-22 4.9E-27 212.1 10.4 111 1935-2046 7-117 (126)
52 3ljw_A Protein polybromo-1; al 99.9 2.1E-22 7.2E-27 209.3 10.5 108 1935-2043 6-113 (120)
53 3aad_A Transcription initiatio 99.9 2.3E-22 7.7E-27 237.3 8.9 197 1730-2045 63-271 (292)
54 3tlp_A Protein polybromo-1; PB 99.9 1E-21 3.5E-26 211.3 10.6 118 1936-2054 23-143 (150)
55 3k2j_A Protein polybromo-1; PB 99.8 1.9E-21 6.5E-26 204.9 10.7 112 1932-2044 12-123 (130)
56 2grc_A Probable global transcr 99.8 2.8E-21 9.6E-26 203.3 11.3 112 1934-2046 8-120 (129)
57 1gku_B Reverse gyrase, TOP-RG; 99.8 2.5E-20 8.6E-25 252.1 20.4 269 999-1424 56-352 (1054)
58 2yyn_A Transcription intermedi 99.8 1.1E-20 3.8E-25 200.2 12.5 111 1932-2050 15-127 (135)
59 3iu6_A Protein polybromo-1; PB 99.8 4.3E-20 1.5E-24 196.6 10.9 109 1934-2047 4-112 (147)
60 3g0l_A Hwalp4, bromodomain adj 99.8 4.9E-20 1.7E-24 190.6 10.9 113 1927-2046 3-115 (117)
61 1tf5_A Preprotein translocase 99.8 8.8E-18 3E-22 218.7 33.5 119 1325-1448 414-540 (844)
62 3d7c_A General control of amin 99.8 1.1E-19 3.8E-24 186.7 12.0 103 1935-2044 5-107 (112)
63 3q2e_A Bromodomain and WD repe 99.8 5E-20 1.7E-24 192.2 9.5 110 1935-2053 8-118 (123)
64 3mb3_A PH-interacting protein; 99.8 1E-19 3.6E-24 192.5 11.2 113 1936-2060 20-133 (135)
65 2v6i_A RNA helicase; membrane, 99.8 6E-19 2E-23 217.6 16.0 97 1342-1446 170-283 (431)
66 2jlq_A Serine protease subunit 99.8 2.7E-19 9.1E-24 221.8 13.0 97 1342-1446 187-304 (451)
67 2oss_A HUNK1 protein, bromodom 99.8 3.5E-19 1.2E-23 187.0 11.2 110 1929-2045 13-124 (127)
68 2fsf_A Preprotein translocase 99.8 8.4E-17 2.9E-21 209.2 34.4 120 1325-1449 423-579 (853)
69 2d9e_A Peregrin; four-helix bu 99.8 4E-19 1.4E-23 185.1 10.3 102 1936-2044 6-107 (121)
70 3jvl_A Bromodomain-containing 99.8 3.3E-19 1.1E-23 185.2 9.3 107 1933-2044 6-114 (120)
71 1yks_A Genome polyprotein [con 99.8 6.8E-19 2.3E-23 217.8 13.7 100 1342-1449 176-295 (440)
72 2i7k_A Bromodomain-containing 99.8 6.6E-19 2.3E-23 182.6 11.4 106 1936-2048 7-112 (117)
73 2ouo_A HUNK1 protein, bromodom 99.8 4.5E-19 1.5E-23 186.9 10.0 111 1929-2044 15-127 (130)
74 1e6i_A Transcriptional activat 99.8 5.5E-19 1.9E-23 184.0 10.1 98 1940-2044 16-113 (121)
75 4alg_A Bromodomain-containing 99.8 7.6E-19 2.6E-23 190.0 10.9 110 1930-2046 25-136 (154)
76 3nxb_A CAT eye syndrome critic 99.8 7.8E-19 2.7E-23 181.4 10.2 100 1938-2044 17-116 (116)
77 2z83_A Helicase/nucleoside tri 99.8 1.4E-18 4.7E-23 216.0 13.7 100 1342-1449 189-309 (459)
78 1rif_A DAR protein, DNA helica 99.8 1.8E-18 6.2E-23 200.7 12.7 163 999-1176 112-278 (282)
79 1nkt_A Preprotein translocase 99.8 1E-16 3.6E-21 208.5 29.6 399 998-1449 109-613 (922)
80 3u5n_A E3 ubiquitin-protein li 99.8 2E-18 6.7E-23 194.7 11.8 113 1930-2050 74-206 (207)
81 3rcw_A Bromodomain-containing 99.7 1.4E-18 4.9E-23 183.9 9.2 106 1933-2046 10-115 (135)
82 2wv9_A Flavivirin protease NS2 99.7 7E-18 2.4E-22 218.8 16.6 100 1342-1449 409-529 (673)
83 3o36_A Transcription intermedi 99.7 4.3E-18 1.5E-22 188.6 12.4 107 1932-2046 76-184 (184)
84 3hme_A Bromodomain-containing 99.7 2.4E-18 8.1E-23 179.8 9.6 99 1938-2043 14-112 (123)
85 3p1f_A CREB-binding protein; s 99.7 3.3E-18 1.1E-22 177.5 10.6 106 1935-2046 9-116 (119)
86 2whx_A Serine protease/ntpase/ 99.7 1.9E-17 6.3E-22 213.1 18.4 95 1342-1444 354-468 (618)
87 3fkm_X Signaling protein; brom 99.7 6.1E-18 2.1E-22 185.0 11.8 114 1930-2051 14-129 (166)
88 2ri7_A Nucleosome-remodeling f 99.7 6.8E-18 2.3E-22 185.2 9.2 105 1932-2043 67-171 (174)
89 2hjv_A ATP-dependent RNA helic 99.7 4.8E-17 1.6E-21 175.0 15.4 122 1324-1450 18-139 (163)
90 2xau_A PRE-mRNA-splicing facto 99.7 9.4E-17 3.2E-21 211.3 21.0 109 1342-1453 302-441 (773)
91 4f92_B U5 small nuclear ribonu 99.7 9.1E-16 3.1E-20 215.3 32.0 150 1000-1158 926-1092(1724)
92 3uv4_A Second bromodomain of h 99.7 1.9E-17 6.5E-22 179.8 11.6 109 1934-2045 23-131 (158)
93 1t5i_A C_terminal domain of A 99.7 5.2E-17 1.8E-21 176.7 14.9 121 1325-1450 15-135 (172)
94 3dai_A ATPase family AAA domai 99.7 2.7E-17 9.3E-22 173.2 12.0 109 1937-2053 10-122 (130)
95 2ro1_A Transcription intermedi 99.7 2.6E-17 8.7E-22 183.5 11.3 109 1932-2052 71-184 (189)
96 2dkw_A Hypothetical protein KI 99.7 3.5E-17 1.2E-21 172.7 11.5 109 1926-2046 1-113 (131)
97 3rc3_A ATP-dependent RNA helic 99.7 3.1E-16 1.1E-20 203.4 22.4 107 1345-1453 322-443 (677)
98 3o8b_A HCV NS3 protease/helica 99.7 4E-17 1.4E-21 210.3 13.2 250 1018-1445 231-507 (666)
99 2jgn_A DBX, DDX3, ATP-dependen 99.7 5.6E-17 1.9E-21 178.8 12.2 122 1324-1449 28-149 (185)
100 2fz4_A DNA repair protein RAD2 99.7 1.2E-16 4.2E-21 182.5 15.0 141 998-1164 91-233 (237)
101 1fuk_A Eukaryotic initiation f 99.7 1.6E-16 5.5E-21 171.0 14.3 118 1328-1450 17-134 (165)
102 2p6n_A ATP-dependent RNA helic 99.7 1.3E-16 4.4E-21 177.1 12.6 119 1325-1449 39-157 (191)
103 2d7d_A Uvrabc system protein B 99.7 9.4E-15 3.2E-19 189.5 30.7 111 1327-1440 429-544 (661)
104 4f92_B U5 small nuclear ribonu 99.7 2.7E-15 9.4E-20 210.5 26.9 149 1000-1158 79-253 (1724)
105 3jux_A Protein translocase sub 99.6 2.5E-14 8.6E-19 183.3 30.4 121 1324-1449 455-583 (822)
106 2r0y_A Chromatin structure-rem 99.6 1.1E-16 3.6E-21 190.6 8.3 102 1936-2044 27-129 (311)
107 2rb4_A ATP-dependent RNA helic 99.6 6.8E-16 2.3E-20 167.6 12.6 115 1328-1447 21-141 (175)
108 2gxq_A Heat resistant RNA depe 99.6 2.3E-15 7.7E-20 165.3 16.8 154 1000-1159 23-185 (207)
109 3eaq_A Heat resistant RNA depe 99.6 1.3E-15 4.4E-20 171.2 15.0 121 1325-1450 15-135 (212)
110 2r10_A Chromatin structure-rem 99.6 2.8E-16 9.4E-21 190.5 10.0 102 1936-2044 77-179 (361)
111 1c4o_A DNA nucleotide excision 99.6 4.8E-14 1.6E-18 183.1 30.6 114 1326-1442 422-540 (664)
112 3b6e_A Interferon-induced heli 99.6 1.2E-15 4E-20 167.7 13.0 131 999-1135 32-176 (216)
113 1t6n_A Probable ATP-dependent 99.6 2.8E-15 9.5E-20 166.9 15.8 157 1000-1161 36-202 (220)
114 3uv5_A Transcription initiatio 99.6 8.7E-16 3E-20 179.2 11.1 104 1936-2046 13-116 (265)
115 2yjt_D ATP-dependent RNA helic 99.4 5.3E-17 1.8E-21 175.7 0.0 120 1326-1450 15-134 (170)
116 2pl3_A Probable ATP-dependent 99.6 9.1E-15 3.1E-19 164.7 16.8 153 1000-1159 47-212 (236)
117 2oxc_A Probable ATP-dependent 99.6 7.7E-15 2.6E-19 165.3 16.2 153 1000-1159 46-208 (230)
118 1vec_A ATP-dependent RNA helic 99.6 8.3E-15 2.8E-19 160.9 15.9 154 1000-1159 25-187 (206)
119 1q0u_A Bstdead; DEAD protein, 99.6 5.9E-15 2E-19 164.6 14.4 161 1000-1167 26-198 (219)
120 3ber_A Probable ATP-dependent 99.6 1.9E-14 6.4E-19 165.0 18.1 154 1000-1159 65-227 (249)
121 1qde_A EIF4A, translation init 99.6 1.6E-14 5.4E-19 161.0 15.2 153 1000-1159 36-196 (224)
122 3aad_A Transcription initiatio 99.6 1.9E-15 6.5E-20 178.6 6.5 102 1936-2044 46-147 (292)
123 3i32_A Heat resistant RNA depe 99.6 1.7E-14 5.6E-19 171.1 14.3 121 1325-1450 12-132 (300)
124 1wrb_A DJVLGB; RNA helicase, D 99.5 4.4E-14 1.5E-18 161.0 16.7 154 1000-1159 45-219 (253)
125 3bor_A Human initiation factor 99.5 2.5E-14 8.7E-19 162.0 14.5 155 1000-1159 52-214 (237)
126 3iuy_A Probable ATP-dependent 99.5 1.9E-13 6.7E-18 153.1 16.5 154 1000-1159 42-208 (228)
127 3fe2_A Probable ATP-dependent 99.5 8.4E-13 2.9E-17 149.8 18.0 154 1000-1159 51-217 (242)
128 3ly5_A ATP-dependent RNA helic 99.5 5.6E-13 1.9E-17 153.9 16.5 154 1000-1159 76-242 (262)
129 3dkp_A Probable ATP-dependent 99.4 6E-13 2.1E-17 150.7 15.3 155 1000-1159 51-220 (245)
130 3fmo_B ATP-dependent RNA helic 99.3 5.6E-12 1.9E-16 148.8 13.4 154 999-1159 113-277 (300)
131 2vl7_A XPD; helicase, unknown 99.3 5.5E-11 1.9E-15 151.0 21.9 112 1331-1449 371-517 (540)
132 2ipc_A Preprotein translocase 99.3 2.2E-10 7.5E-15 149.6 25.5 148 998-1172 77-240 (997)
133 3lqh_A Histone-lysine N-methyl 99.2 2.2E-11 7.5E-16 135.1 11.5 103 1934-2054 72-174 (183)
134 4a15_A XPD helicase, ATP-depen 98.9 3.6E-08 1.2E-12 127.5 22.6 82 1000-1083 3-87 (620)
135 3llm_A ATP-dependent RNA helic 98.8 9.3E-09 3.2E-13 116.7 11.0 149 1000-1159 61-218 (235)
136 3crv_A XPD/RAD3 related DNA he 98.7 2.8E-08 9.6E-13 126.6 12.9 131 999-1135 2-187 (551)
137 3iu6_A Protein polybromo-1; PB 98.7 8.4E-10 2.9E-14 118.1 -3.6 87 1705-1807 10-107 (147)
138 3ljw_A Protein polybromo-1; al 98.6 8.5E-10 2.9E-14 114.8 -4.6 93 1705-1809 11-115 (120)
139 3mqm_A Probable histone-lysine 98.5 5.4E-09 1.9E-13 109.6 -1.5 78 1711-1799 17-105 (126)
140 3mb4_A Protein polybromo-1; PB 98.5 4E-09 1.4E-13 110.3 -2.8 83 1705-1799 18-111 (124)
141 2dat_A Possible global transcr 98.5 6.5E-09 2.2E-13 108.7 -1.4 84 1705-1800 16-110 (123)
142 3k2j_A Protein polybromo-1; PB 98.5 7.1E-09 2.4E-13 109.5 -2.0 82 1706-1799 21-113 (130)
143 3iu5_A Protein polybromo-1; PB 98.5 8.6E-09 3E-13 106.6 -1.9 81 1707-1799 10-101 (116)
144 3tlp_A Protein polybromo-1; PB 98.5 9.2E-09 3.2E-13 110.9 -2.6 95 1706-1811 28-134 (150)
145 2grc_A Probable global transcr 98.3 3.4E-08 1.2E-12 104.1 -1.6 86 1705-1801 14-110 (129)
146 3d7c_A General control of amin 98.0 3.7E-07 1.3E-11 93.9 -1.7 65 1729-1799 22-97 (112)
147 2i7k_A Bromodomain-containing 98.0 6.6E-07 2.2E-11 93.0 -1.2 64 1730-1799 24-98 (117)
148 1e6i_A Transcriptional activat 98.0 5.6E-07 1.9E-11 93.9 -1.7 65 1729-1799 28-103 (121)
149 2d9e_A Peregrin; four-helix bu 98.0 5.3E-07 1.8E-11 94.2 -2.0 63 1731-1799 24-97 (121)
150 3g0l_A Hwalp4, bromodomain adj 97.9 6.9E-07 2.3E-11 92.6 -1.6 64 1730-1799 29-103 (117)
151 3nxb_A CAT eye syndrome critic 97.9 8.1E-07 2.8E-11 91.9 -1.7 63 1731-1799 33-106 (116)
152 3uv4_A Second bromodomain of h 97.9 9.9E-07 3.4E-11 96.1 -1.6 81 1706-1799 29-120 (158)
153 3mb3_A PH-interacting protein; 97.9 9.8E-07 3.4E-11 93.6 -1.7 63 1731-1799 38-112 (135)
154 3hme_A Bromodomain-containing 97.9 1.1E-06 3.7E-11 92.0 -1.7 63 1731-1799 30-103 (123)
155 3q2e_A Bromodomain and WD repe 97.9 1.2E-06 4.2E-11 91.5 -1.5 63 1731-1799 27-101 (123)
156 2oss_A HUNK1 protein, bromodom 97.8 1.3E-06 4.6E-11 91.8 -1.6 65 1729-1799 36-113 (127)
157 3rcw_A Bromodomain-containing 97.8 1.5E-06 5.1E-11 92.2 -1.7 65 1729-1799 28-103 (135)
158 3jvl_A Bromodomain-containing 97.8 1.2E-06 4.1E-11 91.2 -3.1 67 1727-1799 25-104 (120)
159 3dai_A ATPase family AAA domai 97.8 2.9E-06 9.9E-11 89.6 -0.5 52 1729-1781 25-77 (130)
160 2ouo_A HUNK1 protein, bromodom 97.8 1.7E-06 5.8E-11 91.4 -2.3 64 1730-1799 41-117 (130)
161 2ri7_A Nucleosome-remodeling f 97.8 1.6E-06 5.6E-11 95.2 -2.8 65 1729-1799 87-162 (174)
162 3p1f_A CREB-binding protein; s 97.8 2E-06 6.7E-11 89.4 -2.2 65 1729-1799 27-104 (119)
163 4alg_A Bromodomain-containing 97.7 2.6E-06 8.9E-11 92.5 -1.7 76 1711-1799 36-124 (154)
164 3fkm_X Signaling protein; brom 97.5 6.5E-06 2.2E-10 90.4 -2.3 65 1729-1799 36-113 (166)
165 2yyn_A Transcription intermedi 97.5 8.8E-06 3E-10 86.5 -1.6 66 1729-1800 35-112 (135)
166 2dkw_A Hypothetical protein KI 97.4 2.2E-05 7.4E-10 83.3 -0.8 53 1730-1787 28-90 (131)
167 4b3f_X DNA-binding protein smu 97.3 0.0018 6.1E-08 84.3 16.2 151 998-1162 187-402 (646)
168 3u5n_A E3 ubiquitin-protein li 97.2 2.9E-05 1E-09 87.8 -1.9 65 1729-1799 96-173 (207)
169 3o36_A Transcription intermedi 97.2 2.2E-05 7.6E-10 87.2 -3.0 63 1731-1799 98-172 (184)
170 2gk6_A Regulator of nonsense t 97.0 0.005 1.7E-07 79.9 16.0 148 1000-1162 180-376 (624)
171 3upu_A ATP-dependent DNA helic 96.9 0.0049 1.7E-07 77.0 14.0 63 999-1063 24-87 (459)
172 2xzl_A ATP-dependent helicase 96.8 0.0078 2.7E-07 80.4 15.3 146 1000-1161 360-553 (802)
173 3e1s_A Exodeoxyribonuclease V, 96.8 0.0053 1.8E-07 79.1 12.8 126 998-1162 187-318 (574)
174 2wjy_A Regulator of nonsense t 96.7 0.0078 2.7E-07 80.4 14.4 149 999-1162 355-552 (800)
175 1w36_D RECD, exodeoxyribonucle 96.4 0.0088 3E-07 77.5 11.6 145 1002-1163 151-302 (608)
176 3lfu_A DNA helicase II; SF1 he 95.9 0.22 7.6E-06 64.1 20.5 68 1000-1073 9-78 (647)
177 2o0j_A Terminase, DNA packagin 95.3 0.08 2.8E-06 65.3 12.5 156 999-1173 162-325 (385)
178 2orw_A Thymidine kinase; TMTK, 95.1 0.034 1.2E-06 61.5 7.7 35 1022-1059 6-40 (184)
179 2ro1_A Transcription intermedi 94.7 0.0021 7.3E-08 71.9 -3.1 60 1730-1799 92-166 (189)
180 2b8t_A Thymidine kinase; deoxy 94.5 0.064 2.2E-06 61.5 8.0 112 1019-1158 12-124 (223)
181 3cpe_A Terminase, DNA packagin 94.3 0.27 9.2E-06 63.6 14.3 147 999-1162 162-316 (592)
182 2j9r_A Thymidine kinase; TK1, 93.4 0.27 9.2E-06 56.2 10.5 35 1023-1060 32-66 (214)
183 3vkw_A Replicase large subunit 93.3 0.097 3.3E-06 65.6 7.2 108 1022-1162 164-272 (446)
184 1xx6_A Thymidine kinase; NESG, 93.0 0.28 9.5E-06 54.9 9.7 35 1022-1059 11-45 (191)
185 1l8q_A Chromosomal replication 92.9 0.55 1.9E-05 55.4 12.6 98 1020-1158 38-139 (324)
186 1a5t_A Delta prime, HOLB; zinc 92.8 0.21 7.2E-06 59.7 8.9 44 1001-1044 3-49 (334)
187 3syl_A Protein CBBX; photosynt 92.6 0.12 4.2E-06 60.1 6.4 42 1020-1061 68-110 (309)
188 2orv_A Thymidine kinase; TP4A 91.3 0.51 1.7E-05 54.7 9.3 35 1023-1060 23-57 (234)
189 2chg_A Replication factor C sm 91.2 0.64 2.2E-05 50.1 9.6 40 1120-1159 101-141 (226)
190 3u61_B DNA polymerase accessor 90.6 0.44 1.5E-05 56.1 8.2 41 1121-1161 105-147 (324)
191 1jbk_A CLPB protein; beta barr 90.2 1.1 3.7E-05 47.2 10.0 26 1020-1045 44-69 (195)
192 1njg_A DNA polymerase III subu 89.8 1.6 5.6E-05 47.3 11.3 42 1002-1043 28-69 (250)
193 3ec2_A DNA replication protein 89.8 2.9 9.8E-05 45.0 13.1 66 1002-1069 16-86 (180)
194 2gno_A DNA polymerase III, gam 89.5 0.63 2.2E-05 55.5 8.4 38 1121-1158 82-120 (305)
195 3eie_A Vacuolar protein sortin 89.5 0.54 1.9E-05 55.8 7.8 41 1020-1066 52-92 (322)
196 2p65_A Hypothetical protein PF 89.4 1.1 3.7E-05 47.3 9.2 26 1019-1044 43-68 (187)
197 1sxj_D Activator 1 41 kDa subu 89.4 0.57 2E-05 55.2 7.8 39 1121-1159 133-172 (353)
198 3h4m_A Proteasome-activating n 89.1 0.69 2.4E-05 53.2 8.1 24 1018-1041 50-73 (285)
199 2qp9_X Vacuolar protein sortin 88.6 0.54 1.8E-05 56.9 7.0 37 1020-1062 85-121 (355)
200 3bos_A Putative DNA replicatio 88.5 0.98 3.3E-05 49.8 8.5 37 1008-1044 39-77 (242)
201 2z4s_A Chromosomal replication 88.3 1.6 5.4E-05 54.5 11.0 101 1020-1158 131-235 (440)
202 2qby_B CDC6 homolog 3, cell di 88.3 1.2 4.3E-05 53.0 9.8 44 1002-1045 25-71 (384)
203 2bjv_A PSP operon transcriptio 88.2 0.84 2.9E-05 52.2 8.0 31 1010-1040 20-50 (265)
204 3n70_A Transport activator; si 87.9 0.33 1.1E-05 51.0 4.0 31 1010-1040 15-45 (145)
205 2v1u_A Cell division control p 87.1 1.3 4.4E-05 52.5 8.9 44 1002-1045 24-70 (387)
206 1iqp_A RFCS; clamp loader, ext 86.8 1.8 6.3E-05 50.1 9.9 40 1120-1159 109-149 (327)
207 3crv_A XPD/RAD3 related DNA he 86.7 3.4 0.00012 52.8 13.0 84 1332-1425 381-473 (551)
208 3co5_A Putative two-component 85.8 0.32 1.1E-05 51.1 2.5 24 1016-1039 24-47 (143)
209 1sxj_B Activator 1 37 kDa subu 84.9 1.1 3.7E-05 52.0 6.6 39 1121-1159 107-146 (323)
210 3uk6_A RUVB-like 2; hexameric 84.6 1.8 6E-05 51.7 8.4 53 1002-1058 49-105 (368)
211 3e2i_A Thymidine kinase; Zn-bi 84.1 2.7 9.3E-05 48.3 9.2 35 1023-1060 32-66 (219)
212 2qz4_A Paraplegin; AAA+, SPG7, 83.9 2.7 9.2E-05 47.4 9.1 35 1020-1060 40-74 (262)
213 1jr3_A DNA polymerase III subu 83.8 2.6 8.9E-05 50.0 9.4 38 1121-1158 119-157 (373)
214 3vfd_A Spastin; ATPase, microt 83.7 1.5 5E-05 53.5 7.3 40 1019-1064 148-187 (389)
215 1w4r_A Thymidine kinase; type 83.5 1.8 6.3E-05 48.8 7.4 34 1023-1059 24-57 (195)
216 3te6_A Regulatory protein SIR3 83.3 10 0.00035 45.7 14.1 44 1002-1045 25-71 (318)
217 2zan_A Vacuolar protein sortin 82.1 1.5 5.1E-05 54.7 6.6 41 1020-1065 168-208 (444)
218 1ofh_A ATP-dependent HSL prote 81.9 2.9 9.8E-05 48.2 8.5 25 1019-1043 50-74 (310)
219 4b4t_J 26S protease regulatory 81.3 2.3 8E-05 52.8 7.8 46 1019-1070 182-227 (405)
220 3d8b_A Fidgetin-like protein 1 81.0 2.3 7.8E-05 51.4 7.5 37 1019-1061 117-153 (357)
221 2r2a_A Uncharacterized protein 80.5 0.49 1.7E-05 53.2 1.4 22 1022-1043 8-29 (199)
222 3cf0_A Transitional endoplasmi 80.5 2.5 8.5E-05 49.7 7.4 41 1019-1065 49-89 (301)
223 1xwi_A SKD1 protein; VPS4B, AA 80.1 1.3 4.4E-05 52.9 4.8 24 1020-1043 46-69 (322)
224 2qby_A CDC6 homolog 1, cell di 79.7 5.7 0.0002 46.9 10.2 44 1002-1045 25-71 (386)
225 1uaa_A REP helicase, protein ( 78.6 3.7 0.00013 53.6 8.8 105 1000-1131 2-112 (673)
226 3hjh_A Transcription-repair-co 78.5 6.8 0.00023 49.7 10.9 85 1021-1112 16-115 (483)
227 1sxj_E Activator 1 40 kDa subu 78.3 4.9 0.00017 47.5 9.1 40 1121-1160 134-174 (354)
228 3t15_A Ribulose bisphosphate c 78.1 2.6 8.9E-05 49.6 6.6 40 1020-1065 37-76 (293)
229 1fnn_A CDC6P, cell division co 77.8 6.4 0.00022 46.8 9.9 23 1021-1043 46-68 (389)
230 2chq_A Replication factor C sm 76.7 1.5 5.2E-05 50.6 4.0 24 1021-1044 40-63 (319)
231 3k1j_A LON protease, ATP-depen 76.5 2 6.9E-05 55.6 5.5 35 1007-1041 48-82 (604)
232 1gm5_A RECG; helicase, replica 76.1 8.6 0.00029 51.6 11.3 99 1324-1424 398-500 (780)
233 1pjr_A PCRA; DNA repair, DNA r 75.5 6.6 0.00023 51.9 10.0 105 1000-1132 11-121 (724)
234 3hu3_A Transitional endoplasmi 74.4 3.5 0.00012 52.3 6.7 38 1019-1062 238-275 (489)
235 1sxj_C Activator 1 40 kDa subu 73.9 5.6 0.00019 47.3 8.0 39 1121-1159 110-149 (340)
236 1ojl_A Transcriptional regulat 72.7 6 0.00021 46.8 7.8 44 1011-1057 17-60 (304)
237 3b9p_A CG5977-PA, isoform A; A 71.6 2.4 8.3E-05 49.1 4.0 23 1019-1041 54-76 (297)
238 1d2n_A N-ethylmaleimide-sensit 71.0 8.2 0.00028 44.3 8.2 23 1020-1042 65-87 (272)
239 2qen_A Walker-type ATPase; unk 70.0 10 0.00035 44.1 8.9 38 1122-1159 129-173 (350)
240 3oiy_A Reverse gyrase helicase 69.1 17 0.00059 44.0 10.8 95 1324-1420 45-145 (414)
241 1hqc_A RUVB; extended AAA-ATPa 69.0 15 0.00053 42.7 10.1 23 1020-1042 39-61 (324)
242 1g5t_A COB(I)alamin adenosyltr 68.6 8.5 0.00029 43.5 7.4 130 1019-1174 28-174 (196)
243 2r6a_A DNAB helicase, replicat 67.8 13 0.00045 46.3 9.7 50 1007-1058 191-240 (454)
244 2q6t_A DNAB replication FORK h 67.8 12 0.00041 46.6 9.3 50 1007-1058 188-237 (444)
245 1sxj_A Activator 1 95 kDa subu 67.7 20 0.00068 45.5 11.4 24 1020-1043 78-101 (516)
246 2iut_A DNA translocase FTSK; n 66.9 14 0.00048 47.9 9.8 42 1019-1060 214-256 (574)
247 3pfi_A Holliday junction ATP-d 66.5 33 0.0011 40.4 12.2 21 1020-1040 56-76 (338)
248 3pvs_A Replication-associated 66.0 12 0.00042 46.9 8.8 21 1021-1041 52-72 (447)
249 4b4t_L 26S protease subunit RP 65.4 4.4 0.00015 50.9 4.7 43 1020-1068 216-258 (437)
250 1r6b_X CLPA protein; AAA+, N-t 63.6 22 0.00075 47.0 11.1 26 1019-1044 207-232 (758)
251 1qvr_A CLPB protein; coiled co 63.2 15 0.0005 49.7 9.4 27 1019-1045 191-217 (854)
252 4b4t_I 26S protease regulatory 61.7 5.9 0.0002 49.7 4.8 45 1019-1069 216-260 (437)
253 4fcw_A Chaperone protein CLPB; 61.2 8.3 0.00028 44.7 5.7 34 1021-1057 49-82 (311)
254 2c9o_A RUVB-like 1; hexameric 60.9 8.1 0.00028 48.2 5.9 40 1020-1063 64-103 (456)
255 2fna_A Conserved hypothetical 60.3 45 0.0015 38.7 11.8 39 1121-1159 137-179 (357)
256 2cvh_A DNA repair and recombin 60.2 8.3 0.00028 42.1 5.2 45 1007-1057 7-52 (220)
257 4dzz_A Plasmid partitioning pr 60.2 40 0.0014 36.3 10.6 77 1026-1133 9-87 (206)
258 2w58_A DNAI, primosome compone 58.8 21 0.0007 38.8 8.0 39 1020-1061 55-93 (202)
259 4a1f_A DNAB helicase, replicat 58.5 27 0.00094 42.4 9.7 49 1007-1058 34-82 (338)
260 1w5s_A Origin recognition comp 58.3 13 0.00044 44.6 6.9 24 1021-1044 52-77 (412)
261 4b4t_M 26S protease regulatory 57.4 3.4 0.00012 51.8 1.7 44 1019-1068 215-258 (434)
262 1um8_A ATP-dependent CLP prote 56.7 16 0.00053 44.1 7.2 24 1019-1042 72-95 (376)
263 3pxi_A Negative regulator of g 56.6 12 0.0004 49.7 6.6 33 1021-1056 523-555 (758)
264 4b4t_H 26S protease regulatory 56.1 6.2 0.00021 49.9 3.7 44 1019-1068 243-286 (467)
265 1lv7_A FTSH; alpha/beta domain 56.1 8.4 0.00029 43.7 4.5 23 1020-1042 46-68 (257)
266 2eyq_A TRCF, transcription-rep 55.8 33 0.0011 48.0 11.0 95 1324-1420 633-731 (1151)
267 3kl4_A SRP54, signal recogniti 55.2 30 0.001 43.5 9.5 33 1022-1057 100-132 (433)
268 3dm5_A SRP54, signal recogniti 55.1 19 0.00065 45.4 7.8 33 1022-1057 103-135 (443)
269 2kjq_A DNAA-related protein; s 53.3 14 0.00047 39.3 5.3 27 1018-1044 35-61 (149)
270 2w0m_A SSO2452; RECA, SSPF, un 53.2 59 0.002 35.4 10.6 47 1008-1057 11-58 (235)
271 3bh0_A DNAB-like replicative h 52.1 32 0.0011 40.9 8.8 49 1007-1058 56-104 (315)
272 4ddu_A Reverse gyrase; topoiso 51.8 32 0.0011 47.9 9.9 98 1324-1423 102-205 (1104)
273 3cf2_A TER ATPase, transitiona 51.7 29 0.00099 46.8 9.1 42 1019-1066 511-552 (806)
274 1xp8_A RECA protein, recombina 50.2 27 0.00093 42.8 7.9 56 1007-1065 60-117 (366)
275 2zr9_A Protein RECA, recombina 50.1 28 0.00095 42.3 7.9 52 1006-1060 46-99 (349)
276 4b4t_K 26S protease regulatory 49.7 5.8 0.0002 49.7 2.0 41 1019-1065 206-246 (428)
277 3u4q_B ATP-dependent helicase/ 49.2 19 0.00063 50.3 7.0 85 1023-1131 6-91 (1166)
278 2ce7_A Cell division protein F 49.2 21 0.0007 45.4 6.8 34 1020-1059 50-83 (476)
279 3bgw_A DNAB-like replicative h 48.2 34 0.0012 42.9 8.5 50 1006-1058 184-233 (444)
280 1iy2_A ATP-dependent metallopr 45.2 51 0.0017 37.9 8.8 21 1021-1041 75-95 (278)
281 1nlf_A Regulatory protein REPA 44.8 18 0.00062 41.7 5.0 40 1017-1058 28-76 (279)
282 2dr3_A UPF0273 protein PH0284; 44.8 55 0.0019 36.2 8.8 39 1018-1059 22-60 (247)
283 2qgz_A Helicase loader, putati 44.0 42 0.0014 39.8 8.0 37 1019-1057 152-188 (308)
284 3i5x_A ATP-dependent RNA helic 43.2 80 0.0027 39.9 10.9 79 1029-1107 318-400 (563)
285 1ixz_A ATP-dependent metallopr 42.6 53 0.0018 37.1 8.3 21 1021-1041 51-71 (254)
286 1u94_A RECA protein, recombina 42.2 41 0.0014 41.0 7.7 50 1006-1058 48-99 (356)
287 2zts_A Putative uncharacterize 42.1 34 0.0012 37.9 6.5 39 1019-1059 30-68 (251)
288 1wp9_A ATP-dependent RNA helic 41.8 82 0.0028 37.7 10.2 89 1325-1420 33-131 (494)
289 2hjv_A ATP-dependent RNA helic 41.3 72 0.0025 33.8 8.6 56 1049-1106 34-92 (163)
290 3sqw_A ATP-dependent RNA helic 40.6 91 0.0031 39.8 10.9 76 1032-1107 270-349 (579)
291 2jgn_A DBX, DDX3, ATP-dependen 39.9 77 0.0026 34.6 8.8 63 1042-1106 38-103 (185)
292 2zpa_A Uncharacterized protein 39.9 26 0.0009 46.2 5.8 54 999-1060 174-227 (671)
293 1t6n_A Probable ATP-dependent 39.2 1.5E+02 0.0051 32.4 11.0 91 1325-1420 61-164 (220)
294 1t5i_A C_terminal domain of A 39.2 95 0.0032 33.3 9.2 56 1049-1106 30-88 (172)
295 3eaq_A Heat resistant RNA depe 37.5 1.1E+02 0.0036 34.1 9.6 55 1050-1106 31-88 (212)
296 2px0_A Flagellar biosynthesis 37.4 41 0.0014 39.8 6.6 34 1022-1057 108-141 (296)
297 1fuk_A Eukaryotic initiation f 36.9 1.2E+02 0.0042 31.9 9.6 56 1049-1106 29-87 (165)
298 2dhr_A FTSH; AAA+ protein, hex 36.7 58 0.002 41.5 8.1 22 1020-1041 65-86 (499)
299 3ber_A Probable ATP-dependent 35.3 1.9E+02 0.0064 32.8 11.4 91 1324-1420 89-192 (249)
300 2p6n_A ATP-dependent RNA helic 35.2 1.2E+02 0.004 33.4 9.3 55 1050-1106 54-111 (191)
301 3fe2_A Probable ATP-dependent 34.6 1.9E+02 0.0066 32.3 11.2 90 1324-1420 75-182 (242)
302 2rb4_A ATP-dependent RNA helic 34.0 89 0.0031 33.4 8.0 56 1049-1106 33-91 (175)
303 3io5_A Recombination and repai 34.0 78 0.0027 38.6 8.1 38 1022-1060 31-68 (333)
304 3lqh_A Histone-lysine N-methyl 33.4 4.4 0.00015 45.4 -2.4 31 1750-1781 101-131 (183)
305 2oxc_A Probable ATP-dependent 31.9 1.3E+02 0.0044 33.4 9.1 61 1324-1384 70-138 (230)
306 1vma_A Cell division protein F 31.4 73 0.0025 38.0 7.4 32 1023-1057 108-139 (306)
307 3cf2_A TER ATPase, transitiona 30.5 39 0.0013 45.6 5.3 43 1020-1068 239-281 (806)
308 3nhm_A Response regulator; pro 30.2 1.6E+02 0.0055 28.8 8.6 97 1338-1440 22-122 (133)
309 1zu4_A FTSY; GTPase, signal re 30.1 83 0.0028 37.7 7.6 32 1023-1057 109-140 (320)
310 1xti_A Probable ATP-dependent 29.9 2.1E+02 0.0071 33.7 11.0 91 1325-1420 55-158 (391)
311 3i32_A Heat resistant RNA depe 29.8 1.3E+02 0.0044 35.8 9.1 55 1050-1106 28-85 (300)
312 3g5j_A Putative ATP/GTP bindin 29.8 53 0.0018 33.2 5.1 51 1328-1378 74-125 (134)
313 2z43_A DNA repair and recombin 29.7 96 0.0033 36.8 8.0 52 1007-1058 94-149 (324)
314 2pl3_A Probable ATP-dependent 29.5 2.1E+02 0.0072 31.6 10.4 60 1324-1383 71-141 (236)
315 1gku_B Reverse gyrase, TOP-RG; 29.3 1.1E+02 0.0037 42.6 9.4 93 1324-1420 80-181 (1054)
316 3sxu_A DNA polymerase III subu 29.1 1.7E+02 0.0059 31.6 9.1 80 1327-1425 23-106 (150)
317 2v1x_A ATP-dependent DNA helic 28.2 98 0.0034 40.1 8.3 78 1325-1405 69-146 (591)
318 3cmu_A Protein RECA, recombina 28.2 1E+02 0.0035 45.6 9.1 50 1009-1061 1415-1466(2050)
319 1cr0_A DNA primase/helicase; R 27.5 91 0.0031 36.1 7.2 47 1009-1057 25-71 (296)
320 3a10_A Response regulator; pho 27.5 1.8E+02 0.0062 27.7 8.2 90 1342-1438 24-115 (116)
321 3ly5_A ATP-dependent RNA helic 27.3 3.1E+02 0.011 31.2 11.5 89 1325-1420 101-207 (262)
322 3m6a_A ATP-dependent protease 27.2 1E+02 0.0036 39.4 8.2 25 1019-1043 108-132 (543)
323 3iuy_A Probable ATP-dependent 26.8 1.4E+02 0.0048 32.9 8.2 73 1342-1420 93-173 (228)
324 3i42_A Response regulator rece 26.8 77 0.0026 31.0 5.5 96 1341-1442 25-124 (127)
325 2ck3_A ATP synthase subunit al 26.7 2.3E+02 0.0079 36.4 11.0 79 1006-1085 150-236 (510)
326 1sky_E F1-ATPase, F1-ATP synth 26.5 9.8E+02 0.034 30.4 16.5 61 1007-1071 140-204 (473)
327 1q57_A DNA primase/helicase; d 26.3 1.2E+02 0.004 38.3 8.3 48 1009-1058 232-279 (503)
328 2j48_A Two-component sensor ki 26.1 1.3E+02 0.0044 28.3 6.8 93 1341-1439 23-117 (119)
329 4a2p_A RIG-I, retinoic acid in 26.1 1.1E+02 0.0037 38.1 7.9 91 1324-1420 31-136 (556)
330 1ls1_A Signal recognition part 26.0 1.1E+02 0.0039 36.0 7.7 32 1023-1057 102-133 (295)
331 3tbk_A RIG-I helicase domain; 24.8 84 0.0029 38.9 6.6 91 1324-1420 28-133 (555)
332 3hr8_A Protein RECA; alpha and 24.2 1.3E+02 0.0043 36.9 7.8 52 1007-1061 47-100 (356)
333 3u4q_A ATP-dependent helicase/ 24.2 64 0.0022 45.4 5.9 122 998-1131 8-137 (1232)
334 3cmu_A Protein RECA, recombina 23.6 79 0.0027 46.7 6.6 58 1006-1066 717-776 (2050)
335 2gxq_A Heat resistant RNA depe 23.5 2.2E+02 0.0074 30.6 8.8 61 1324-1384 47-115 (207)
336 1oyw_A RECQ helicase, ATP-depe 23.4 1.8E+02 0.006 37.0 9.2 77 1325-1406 50-126 (523)
337 3grc_A Sensor protein, kinase; 23.1 1.9E+02 0.0064 28.7 7.7 96 1341-1440 28-127 (140)
338 2r44_A Uncharacterized protein 22.9 50 0.0017 38.8 3.8 24 1018-1041 45-68 (331)
339 4a2q_A RIG-I, retinoic acid in 22.8 1.4E+02 0.0048 39.8 8.4 91 1324-1420 272-377 (797)
340 3b6e_A Interferon-induced heli 22.1 1E+02 0.0034 33.2 5.8 55 1325-1379 58-122 (216)
341 2i4i_A ATP-dependent RNA helic 22.0 1.8E+02 0.006 34.8 8.4 66 1040-1107 266-334 (417)
342 3eqz_A Response regulator; str 21.8 1.9E+02 0.0065 28.2 7.3 96 1343-1443 27-128 (135)
343 3oaa_A ATP synthase subunit al 21.5 2.8E+02 0.0094 35.8 10.2 74 1006-1084 150-227 (513)
344 3cg4_A Response regulator rece 21.4 3.2E+02 0.011 26.9 9.0 95 1342-1440 30-127 (142)
345 4e7p_A Response regulator; DNA 20.9 2.6E+02 0.009 28.1 8.4 82 1077-1159 22-104 (150)
346 2i1q_A DNA repair and recombin 20.5 1.1E+02 0.0038 36.0 6.1 37 1006-1042 84-121 (322)
347 1v5w_A DMC1, meiotic recombina 20.5 1.6E+02 0.0054 35.4 7.5 53 1006-1058 108-164 (343)
348 1ypw_A Transitional endoplasmi 20.4 45 0.0016 44.8 3.1 22 1019-1040 238-259 (806)
349 3n53_A Response regulator rece 20.1 4.2E+02 0.014 26.1 9.5 90 1343-1439 26-121 (140)
350 3eul_A Possible nitrate/nitrit 20.1 2.1E+02 0.0071 28.9 7.4 44 1115-1159 55-99 (152)
351 2qe7_A ATP synthase subunit al 20.1 1.8E+02 0.0063 37.2 8.2 76 1006-1086 150-229 (502)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-75 Score=766.70 Aligned_cols=466 Identities=40% Similarity=0.679 Sum_probs=395.4
Q ss_pred hhccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000101 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2239)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~ 1067 (2239)
.+..+|..+.+++|||||++||+||+.++.++.||||||+||||||+++|+++.+++......+|+|||||.+|+.||..
T Consensus 224 ~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~ 303 (800)
T 3mwy_W 224 KLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLD 303 (800)
T ss_dssp CCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHH
T ss_pred ccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHH
Confidence 45567888888899999999999999999999999999999999999999999999887888899999999999999999
Q ss_pred HHHHHCCCCceEEEecchhhHHHHHHH----------HhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChh
Q 000101 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQ----------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1137 (2239)
Q Consensus 1068 Ef~KwaPslkvvvy~Gskd~Rk~l~~~----------i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~ 1137 (2239)
||.+|+|.+.+++|+|....+..+... .....++|+||||+++.++...|..+.|++|||||||++||..
T Consensus 304 E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~ 383 (800)
T 3mwy_W 304 TFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAE 383 (800)
T ss_dssp HHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSS
T ss_pred HHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCch
Confidence 999999999999999998877655432 2345789999999999999999999999999999999999999
Q ss_pred hHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000101 1138 SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1217 (2239)
Q Consensus 1138 SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~ 1217 (2239)
+++++++..+.+.+||+|||||++|++.|||+||+||.|+.|.....|.-.. . . ......+.
T Consensus 384 s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~------~-----~-------~~~~~~~~ 445 (800)
T 3mwy_W 384 SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN------Q-----D-------EEQEEYIH 445 (800)
T ss_dssp SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C------C-----T-------THHHHHHH
T ss_pred hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc------c-----c-------hhHHHHHH
Confidence 9999999999999999999999999999999999999999998766553111 0 0 11223577
Q ss_pred HHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000101 1218 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1297 (2239)
Q Consensus 1218 RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niI 1297 (2239)
+|+.++.||++||++.+|...||++.+.+++|.|++.|+.+|+.+.......+.... ......+++.+
T Consensus 446 ~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~------------~~~~~~~l~~l 513 (800)
T 3mwy_W 446 DLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA------------KGGHFSLLNIM 513 (800)
T ss_dssp HHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------------------CTHHHHH
T ss_pred HHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcc------------ccchhhHHHHH
Confidence 899999999999999999999999999999999999999999998775433322111 11223578899
Q ss_pred HHHHHHcCCCCCCCCCcccc-------------chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHH
Q 000101 1298 MELRKTCNHPLLNYPYFSDL-------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1364 (2239)
Q Consensus 1298 mqLRKiCnHP~L~~p~~~~~-------------s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~ 1364 (2239)
+.||++|+||+++....... ....++..++|+.+|.++|..+...|+||||||+|+.++++|+++|.
T Consensus 514 ~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~ 593 (800)
T 3mwy_W 514 NELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS 593 (800)
T ss_dssp HHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH
Confidence 99999999999875432110 11345678999999999999999999999999999999999999999
Q ss_pred HcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcc
Q 000101 1365 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1444 (2239)
Q Consensus 1365 ~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkK 1444 (2239)
.+|+.|++|||+++.++|.++++.|+++++.++|||+||++||+||||+.||+||+||++|||..++||+||+||+||++
T Consensus 594 ~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k 673 (800)
T 3mwy_W 594 IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKN 673 (800)
T ss_dssp HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCS
T ss_pred hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCc
Q 000101 1445 EVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 1516 (2239)
Q Consensus 1445 eV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~ 1516 (2239)
+|.||+|++ .+|||+.|+++ +..|+.++..|++.|.++.
T Consensus 674 ~V~Vyrlv~--------------------------------~~TiEe~i~~~-~~~K~~l~~~vi~~~~~~~ 712 (800)
T 3mwy_W 674 HVMVYRLVS--------------------------------KDTVEEEVLER-ARKKMILEYAIISLGVTDG 712 (800)
T ss_dssp CEEEEEEEE--------------------------------TTSHHHHHHHH-HHHHTTSCC----------
T ss_pred eEEEEEEec--------------------------------CCCHHHHHHHH-HHHHHHHHHHHHccCcccc
Confidence 999999976 37999999985 5789999999998887754
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.9e-71 Score=707.77 Aligned_cols=466 Identities=30% Similarity=0.487 Sum_probs=387.6
Q ss_pred CCChHHHHHHHHHHHHhh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechHHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNAVLVNWKSEL 1069 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~-----~n~lnGILADEMGLGKTIQAIALIa~Lie~k~----~~GP~LIVVP~SLLsQW~~Ef 1069 (2239)
.+|||||++||.||+..+ .++.+|||||+||+|||+++|+++..++.... ..+++|||||.+++.||..||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~ 133 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHH
Confidence 489999999999999876 45678999999999999999999999876433 235689999999999999999
Q ss_pred HHHCCC-CceEEEec-chhhHHHHHHHHhh-----cCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHH
Q 000101 1070 HKWLPS-VSCIYYVG-AKDQRSRLFSQVAA-----LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1070 ~KwaPs-lkvvvy~G-skd~Rk~l~~~i~~-----~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
.+|++. +.++.+.+ ....+......... ..++|+||||+++..+...|....|++|||||||++||..++.++
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~ 213 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYL 213 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHH
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHH
Confidence 999975 55555554 44333332222211 257899999999999988999999999999999999999999999
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
++..+.+.+||+|||||++|++.|||+||+||.|++|++...|.++|..|+........... ........+.+|+.+
T Consensus 214 al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~---~~~~~~~~~~~L~~~ 290 (644)
T 1z3i_X 214 ALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDK---DRAAGEQKLQELISI 290 (644)
T ss_dssp HHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSH---HHHHHHHHHHHHHHH
T ss_pred HHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHH---HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988765543333222 222334457789999
Q ss_pred hhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1302 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRK 1302 (2239)
+.||++||++.++...||++.+.+++|+|++.|+.+|+.+.......... ... ......+..++.||+
T Consensus 291 l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~-------~~g-----~~~~~~l~~l~~Lrk 358 (644)
T 1z3i_X 291 VNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL-------QTG-----KISVSSLSSITSLKK 358 (644)
T ss_dssp HHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS-------CTT-----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH-------hcC-----ccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886643221100 000 011345667889999
Q ss_pred HcCCCCCCCCCc-------cc--------c-chhhHhhcccHHHHHHHHHHHHHh-cCCeEEEEEccHHHHHHHHHHHHH
Q 000101 1303 TCNHPLLNYPYF-------SD--------L-SKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQW 1365 (2239)
Q Consensus 1303 iCnHP~L~~p~~-------~~--------~-s~d~Li~~SGKLelLdrIL~kLka-tGhKVLIFSQ~t~~LDILed~L~~ 1365 (2239)
+|+||.++.... .. . ........++|+.+|+.+|..+.. .++|+||||+++.++++|+.+|..
T Consensus 359 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~ 438 (644)
T 1z3i_X 359 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN 438 (644)
T ss_dssp HHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHH
Confidence 999998753210 00 0 011223568999999999998864 589999999999999999999999
Q ss_pred cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcce
Q 000101 1366 RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1445 (2239)
Q Consensus 1366 rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKe 1445 (2239)
.|+.|++|||+++.++|.+++++|++++...++||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++
T Consensus 439 ~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 518 (644)
T 1z3i_X 439 RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 518 (644)
T ss_dssp HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999998777778999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhcc
Q 000101 1446 VKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1512 (2239)
Q Consensus 1446 V~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAG 1512 (2239)
|.||+|++ .++||+.|++. +..|..+.+.|++.+
T Consensus 519 v~v~~lv~--------------------------------~~tiEe~i~~~-~~~K~~l~~~v~~~~ 552 (644)
T 1z3i_X 519 CYIYRLLS--------------------------------TGTIEEKILQR-QAHKKALSSCVVDEE 552 (644)
T ss_dssp EEEEEEEE--------------------------------TTSHHHHHHHH-HHHHHHTSCCCCSCS
T ss_pred eEEEEEEE--------------------------------CCCHHHHHHHH-HHHHHHHHHHHhcCc
Confidence 99999976 37999999984 577888887777654
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.3e-65 Score=636.81 Aligned_cols=444 Identities=29% Similarity=0.515 Sum_probs=377.3
Q ss_pred CccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000101 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (2239)
Q Consensus 993 Ps~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~Kw 1072 (2239)
|..+. .+|+|||.+|+.||..++..+.+|||||+||+|||+++++++..+.. .+..+++|||||.+++.||..||.+|
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred Chhhh-ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEccHHHHHHHHHHHHHH
Confidence 55554 58999999999999998888899999999999999999999988874 45567999999999999999999999
Q ss_pred CCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceE
Q 000101 1073 LPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR 1152 (2239)
Q Consensus 1073 aPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rR 1152 (2239)
+|.+.+.+|.|.... .....++|+||||+++.++.. +....|++|||||||+++|..+++++++..+.+.++
T Consensus 109 ~~~~~v~~~~g~~~~-------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~ 180 (500)
T 1z63_A 109 APHLRFAVFHEDRSK-------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYR 180 (500)
T ss_dssp CTTSCEEECSSSTTS-------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEE
T ss_pred CCCceEEEEecCchh-------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcE
Confidence 999999999887532 234578999999999987755 677899999999999999999999999999999999
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhH
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1232 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlK 1232 (2239)
|+|||||++|++.|||++++||.|+.|++...|.++|..|+.... .....+|+.++.|+++||++
T Consensus 181 l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~---------------~~~~~~l~~~l~~~~lrr~k 245 (500)
T 1z63_A 181 IALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD---------------NMAKEELKAIISPFILRRTK 245 (500)
T ss_dssp EEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC---------------HHHHHHHHHHHTTTEECCCT
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc---------------HHHHHHHHHHHhhHeeeecc
Confidence 999999999999999999999999999999999999987765421 11345788999999999999
Q ss_pred hh--hhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1233 ED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1233 kD--VekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
.+ +...||++.+.+++|+|++.|+.+|+.+.......+... ........+...++.||++|+||.+.
T Consensus 246 ~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~lr~~~~~p~l~ 314 (500)
T 1z63_A 246 YDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSV-----------TGIKRKGMILSTLLKLKQIVDHPALL 314 (500)
T ss_dssp TCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTC-----------CTHHHHHHHHHHHHHHHHHTTCTHHH
T ss_pred cccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhh-----------hcccchHHHHHHHHHHHHHhCCHHHh
Confidence 76 677999999999999999999999998765432211110 00112345677889999999999875
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHH
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDF 1389 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Giky~RLDGsts~eeRqeiL~~F 1389 (2239)
... ...+..++|+..|.++|.++...++|+||||+++.+++.|.++|... |+.+.++||+++.++|.+++++|
T Consensus 315 ~~~------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F 388 (500)
T 1z63_A 315 KGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF 388 (500)
T ss_dssp HCS------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHH
T ss_pred cCc------cchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHh
Confidence 321 22345688999999999999999999999999999999999999986 99999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhcc
Q 000101 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRS 1469 (2239)
Q Consensus 1390 Ns~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls 1469 (2239)
+++ ..+.+||+||+++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++
T Consensus 389 ~~~-~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~---------------- 451 (500)
T 1z63_A 389 QNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS---------------- 451 (500)
T ss_dssp HHC-TTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEE----------------
T ss_pred cCC-CCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEe----------------
Confidence 974 346688999999999999999999999999999999999999999999999999999976
Q ss_pred CCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhcc
Q 000101 1470 GGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1512 (2239)
Q Consensus 1470 ~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAG 1512 (2239)
.++||+.|++. ...|..+.+.++..+
T Consensus 452 ----------------~~tiee~i~~~-~~~K~~l~~~~~~~~ 477 (500)
T 1z63_A 452 ----------------VGTLEEKIDQL-LAFKRSLFKDIISSG 477 (500)
T ss_dssp ----------------TTSHHHHTHHH-HTTCSSSSSSGGGST
T ss_pred ----------------CCCHHHHHHHH-HHHHHHHHHHHhhcC
Confidence 26889998874 567777777777654
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.2e-46 Score=503.48 Aligned_cols=430 Identities=18% Similarity=0.216 Sum_probs=318.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCce
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkv 1078 (2239)
.+|+|||.+++.|++.. .+.++||||+||+|||+++++++..++. .+..+++|||||++|+.||..||.+|+ ++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~-~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v 227 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NLRF 227 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHH-TSSCCCEEEECCTTTHHHHHHHHHHHS-CCCC
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCE
Confidence 48999999999999873 3567899999999999999999988875 566679999999999999999999998 6777
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh---hhcccCCceEEEecccccccChhhH---HHHHhhcc--ccc
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY--RCQ 1150 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrIKN~~SK---lskaLk~L--ka~ 1150 (2239)
.+|.|................++|+||||+.+.++. ..+....|++|||||||+++|..+. .++.+..+ .+.
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~ 307 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVP 307 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCS
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCC
Confidence 777765433211111122346799999999998763 4466779999999999999987654 47777777 677
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcc---------cCCC---------CC------------
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQ---------KEGP---------TH------------ 1200 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~---------~~g~---------~~------------ 1200 (2239)
++|+|||||++|++.|+|++++||.|..|++...|..++..... .... ..
T Consensus 308 ~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp SEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGG
T ss_pred cEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHh
Confidence 89999999999999999999999999999999988876432110 0000 00
Q ss_pred ---CCChhhHHHHHHHHHHHHHHHhh-----hhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCc
Q 000101 1201 ---NADDDWLETEKKVIIIHRLHQIL-----EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1272 (2239)
Q Consensus 1201 ---~~e~d~l~~ee~~lii~RLhklL-----rPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~ 1272 (2239)
....... .. ....+..++ ..+++|+.+..+ ..+|.+....+.+.+++....+|.............
T Consensus 388 ~~~~~~~~~~--~~---~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 388 AANSDSEDAQ--SA---RQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp GTCCCSSCST--TT---HHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred cccchhhhhH--HH---HHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 0000000 00 011122222 234555555555 478999999999999999999987543321111100
Q ss_pred hhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEcc
Q 000101 1273 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTM 1352 (2239)
Q Consensus 1273 ~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~ 1352 (2239)
.. ...|.+|...+..+.. .....+..+.|+..|.++|.. ..+.|+||||++
T Consensus 462 ~~--------------------------~~~~l~pe~~~~~l~~-~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~ 512 (968)
T 3dmq_A 462 DR--------------------------ARDMLYPERIYQEFEG-DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAK 512 (968)
T ss_dssp GG--------------------------THHHHCSGGGTTTTTS-SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSS
T ss_pred HH--------------------------HhhhcChHHHHHHhhh-hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCc
Confidence 00 0011223222221111 111244567899999999987 568999999999
Q ss_pred HHHHHHHHHHHHH-cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHH
Q 000101 1353 TKLLDILEEYLQW-RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEE 1431 (2239)
Q Consensus 1353 t~~LDILed~L~~-rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dl 1431 (2239)
+.+++.|..+|.. .|+.+..+||+++..+|.++++.|+++++.+ .|||+|+++++||||+.|++||+||+||||..+.
T Consensus 513 ~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~ 591 (968)
T 3dmq_A 513 AATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLE 591 (968)
T ss_dssp THHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcc-cEEEecchhhcCCCcccCcEEEEecCCCCHHHHH
Confidence 9999999999995 5999999999999999999999999754333 4688999999999999999999999999999999
Q ss_pred HhhhhhcccCCcceEEEEEEeh---hhhhhhhhhhhhhhc
Q 000101 1432 QAVARAHRIGQKREVKVIYMEA---VVDKISSHQKEDELR 1468 (2239)
Q Consensus 1432 QAiGRAhRIGQkKeV~VyrLva---VEEkI~s~q~eKe~l 1468 (2239)
|++||+||+||++.|.||+++. ++++|.....++...
T Consensus 592 Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~ 631 (968)
T 3dmq_A 592 QRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA 631 (968)
T ss_dssp HHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred HHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCc
Confidence 9999999999999999998854 666666665544433
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.9e-43 Score=421.97 Aligned_cols=427 Identities=18% Similarity=0.180 Sum_probs=276.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC--CCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL--PSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~Kwa--Psl 1076 (2239)
+|+|||.+++.|++. + ++||+++||+|||++++.++..++. ...+++|||||+ .|+.||..+|.+|+ +..
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 799999999999886 3 8999999999999999999888775 345689999997 69999999999998 566
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChhh--HHHHHhh-ccccce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLD-RYRCQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~S--KlskaLk-~Lka~r 1151 (2239)
.+.+++|........ .....++|+|+||+.+..... .+...+|++|||||||++++... .+...+. .....+
T Consensus 82 ~v~~~~g~~~~~~~~---~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 82 KIVALTGEKSPEERS---KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GEEEECSCSCHHHHH---HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred heEEeeCCcchhhhh---hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 888888876543321 112367999999999987643 45667899999999999986422 2222222 235678
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCccc---CChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVF---DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF---~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
+|+|||||. ++..+++.+++++....+ .....+...+..+........... .....+...+.+++.
T Consensus 159 ~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 227 (494)
T 1wp9_A 159 VIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLP----------EIYKEVRKLLREMLR 227 (494)
T ss_dssp EEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCC----------HHHHHHHHHHHHHHH
T ss_pred EEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCc----------HHHHHHHHHHHHHHH
Confidence 999999999 777788877777755432 222111111111110000000000 123456667778888
Q ss_pred hHhHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhc----ChhhHHHHHHHHHHHHHHHHHH
Q 000101 1229 RRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK----NPIYQAKVYKTLNNRCMELRKT 1303 (2239)
Q Consensus 1229 RRlKkDVekdLP~K~e-~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k----~~~~~~k~~ksL~niImqLRKi 1303 (2239)
++++......+..... .+....+......++..+................... ...........+...+..|...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (494)
T 1wp9_A 228 DALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEE 307 (494)
T ss_dssp HHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence 8877655443322211 0111111122222222221110000000000000000 0000001112334444555555
Q ss_pred cCCCCCCCCC--ccccch----------hhHhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHcCCe
Q 000101 1304 CNHPLLNYPY--FSDLSK----------DFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLV 1369 (2239)
Q Consensus 1304 CnHP~L~~p~--~~~~s~----------d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~rGik 1369 (2239)
|.|+...... +.+... ......+.|+..|.++|..+. ..++|+||||+++.+++.|.++|...|+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~ 387 (494)
T 1wp9_A 308 AKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIK 387 (494)
T ss_dssp HHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred hccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCC
Confidence 5442110000 000000 001145779999999999876 56899999999999999999999999999
Q ss_pred EEeecC--------CCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccC
Q 000101 1370 YRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1441 (2239)
Q Consensus 1370 y~RLDG--------sts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIG 1441 (2239)
+..+|| +++.++|.+++++|++++.. ||++|+++++||||+.|++||+||++|||..+.||+||+||.|
T Consensus 388 ~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g 464 (494)
T 1wp9_A 388 AKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM 464 (494)
T ss_dssp EEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC
T ss_pred cEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCC
Confidence 999999 99999999999999975533 6999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEeh
Q 000101 1442 QKREVKVIYMEA 1453 (2239)
Q Consensus 1442 QkKeV~VyrLva 1453 (2239)
+ +.+|+|++
T Consensus 465 ~---g~~~~l~~ 473 (494)
T 1wp9_A 465 P---GRVIILMA 473 (494)
T ss_dssp C---SEEEEEEE
T ss_pred C---ceEEEEEe
Confidence 8 55666644
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.5e-38 Score=387.72 Aligned_cols=357 Identities=19% Similarity=0.222 Sum_probs=254.2
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPsl 1076 (2239)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||+ .|+.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 45899999999998775 4569999999999999998887654 4689999998 7999999999995 56
Q ss_pred c-eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEe
Q 000101 1077 S-CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLL 1155 (2239)
Q Consensus 1077 k-vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLL 1155 (2239)
. +.++.|.... ..+|+|+||+.+......+. .+|++|||||||++.+.... ..+..+.+.++|+|
T Consensus 159 ~~v~~~~g~~~~-----------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~l 224 (472)
T 2fwr_A 159 EYVGEFSGRIKE-----------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGL 224 (472)
T ss_dssp GGEEEBSSSCBC-----------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEE
T ss_pred cceEEECCCcCC-----------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEEE
Confidence 6 7777776532 46899999999987765543 36999999999999886654 35566788899999
Q ss_pred cCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhh
Q 000101 1156 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDV 1235 (2239)
Q Consensus 1156 TGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDV 1235 (2239)
||||.+++..+ . .|..++.|.+.++...++
T Consensus 225 SATp~~~~~~~----------------~----------------------------------~l~~~~~~~~~~~~~~~l 254 (472)
T 2fwr_A 225 TATFEREDGRH----------------E----------------------------------ILKEVVGGKVFELFPDSL 254 (472)
T ss_dssp ESCCCCTTSGG----------------G----------------------------------SHHHHTCCEEEECCHHHH
T ss_pred ecCccCCCCHH----------------H----------------------------------HHHHHhCCeEeecCHHHH
Confidence 99998654211 0 122233333334333343
Q ss_pred hc-CCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Q 000101 1236 EG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF 1314 (2239)
Q Consensus 1236 ek-dLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~ 1314 (2239)
.. .+++.....+.+.+++.+...|..+.......+...... ......+ ..+ + ...+..+.......
T Consensus 255 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~-----~~~---~---~~~~~~~~~~~~~~ 321 (472)
T 2fwr_A 255 AGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT--LRRAEDF-----NKI---V---MASGYDERAYEALR 321 (472)
T ss_dssp TSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT--TTCCSSS-----TTT---T---TTTCCSSSSSTTTH
T ss_pred hcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc--ccchhhH-----HHH---H---HHhccCHHHHHHHH
Confidence 32 367777778899999999888864422111000000000 0000000 000 0 00000000000000
Q ss_pred -cccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCC
Q 000101 1315 -SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1393 (2239)
Q Consensus 1315 -~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~d 1393 (2239)
...........+.|+..|.++|.. ..++++||||+++.+++.|.+.|. +..++|+++..+|.++++.|+++.
T Consensus 322 ~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 322 AWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGR 394 (472)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSS
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCC
Confidence 000011123456799999999887 568999999999999999999983 556999999999999999999754
Q ss_pred CCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCc-ceEEEEEEeh
Q 000101 1394 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK-REVKVIYMEA 1453 (2239)
Q Consensus 1394 s~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQk-KeV~VyrLva 1453 (2239)
.. ||++|+++++||||+.+++||+||++||+..+.|++||++|.|+. +.|.||++++
T Consensus 395 ~~---vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~ 452 (472)
T 2fwr_A 395 FR---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 452 (472)
T ss_dssp CS---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred CC---EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEe
Confidence 44 689999999999999999999999999999999999999999998 8899999975
No 7
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.5e-36 Score=373.35 Aligned_cols=413 Identities=15% Similarity=0.144 Sum_probs=212.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~--~GP~LIVVP~-SLLsQW~~Ef~KwaP- 1074 (2239)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+ .|+.||..+|.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4899999999999975 6789999999999999999988877753221 5689999997 599999999999987
Q ss_pred -CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--c-ccCCceEEEecccccccChhhHHHHHhhcc---
Q 000101 1075 -SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY--- 1147 (2239)
Q Consensus 1075 -slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrIKN~~SKlskaLk~L--- 1147 (2239)
++.+..++|......... .....++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 82 ~~~~~~~~~g~~~~~~~~~--~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~ 158 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVE--KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQ 158 (556)
T ss_dssp GTCCEEECCCC-----CHH--HHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHH--HhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHHh
Confidence 788888888764332211 1123589999999999876432 3 455789999999999987654 22222222
Q ss_pred ------ccceEEEecCCCCCCCH-------HHHHHHHhhhcCccc----CChHHHHhhhcCCcccCCCCCCCChhhHHHH
Q 000101 1148 ------RCQRRLLLTGTPLQNDL-------KELWSLLNLLLPEVF----DNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1210 (2239)
Q Consensus 1148 ------ka~rRLLLTGTPIQNnL-------~ELwsLLnFLlP~iF----~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~e 1210 (2239)
...++|+|||||..++. ..+..+...+....+ .....+..++..|................ .
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 237 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA-A 237 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHH-H
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHH-H
Confidence 23579999999988653 333334444443322 23455666665554322111111111111 1
Q ss_pred HHHHHHHHHHHhhhh----------------------HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCc
Q 000101 1211 KKVIIIHRLHQILEP----------------------FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTL 1268 (2239)
Q Consensus 1211 e~~lii~RLhklLrP----------------------FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l 1268 (2239)
........++..+.. ++....+......+|. ...+..+|..+......
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 307 (556)
T 4a2p_A 238 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED----------KEEESRICRALFICTEH 307 (556)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---C----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccc----------cchhHHHHHHHHHHHHH
Confidence 111122233333222 1222111111111111 11122222211110000
Q ss_pred ccCchhHHhhhhcChhhHHHHHHHHHHHHHHH-----------------------HHHcCCCCCCCCCccccchhhHhhc
Q 000101 1269 RVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL-----------------------RKTCNHPLLNYPYFSDLSKDFLVKS 1325 (2239)
Q Consensus 1269 ~l~~~~ek~~l~k~~~~~~k~~ksL~niImqL-----------------------RKiCnHP~L~~p~~~~~s~d~Li~~ 1325 (2239)
. ............ .........+...+..+ ...|..+ ...
T Consensus 308 l-~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~ 370 (556)
T 4a2p_A 308 L-RKYNDALIISED-ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDE---------------TNE 370 (556)
T ss_dssp H-HHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCS---------------SSC
T ss_pred H-HHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCC---------------CCC
Confidence 0 000000000000 00000011111111111 1111111 123
Q ss_pred ccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHc------------CCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1326 CGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1326 SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~r------------Giky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
++|+..|.++|.+.. ..++|+||||+++.+++.|.++|... |..+..+||+++.++|.+++++|++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 679999999998876 56899999999999999999999765 5566677788999999999999997
Q ss_pred -CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1392 -HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1392 -~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+... |||+|+++++||||++|++||+||+||||..|+||+|| +|. +.+.+|.|++
T Consensus 451 ~g~~~---vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~ 506 (556)
T 4a2p_A 451 SKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 506 (556)
T ss_dssp ---CC---EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEES
T ss_pred cCceE---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 4433 78999999999999999999999999999999999999 665 5566666654
No 8
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.1e-35 Score=368.65 Aligned_cols=429 Identities=14% Similarity=0.155 Sum_probs=232.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~--~GP~LIVVP~-SLLsQW~~Ef~KwaP- 1074 (2239)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+ .|+.||..+|.+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999975 6789999999999999999988877753321 6789999998 589999999999986
Q ss_pred -CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--c-ccCCceEEEecccccccChhhHHHHHhhcc---
Q 000101 1075 -SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY--- 1147 (2239)
Q Consensus 1075 -slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrIKN~~SKlskaLk~L--- 1147 (2239)
++.+..++|.......... ....++|+|+||+.+...... + ...+|++|||||||++.+... ....+..+
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~--~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~ 155 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQH--IIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLDH 155 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHH--HHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHH--HhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHHh
Confidence 6788888887654332211 123589999999999876432 3 345789999999999987654 22222222
Q ss_pred -------ccceEEEecCCCCCCC-------HHHHHHHHhhhcCccc----CChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000101 1148 -------RCQRRLLLTGTPLQND-------LKELWSLLNLLLPEVF----DNRKAFHDWFSQPFQKEGPTHNADDDWLET 1209 (2239)
Q Consensus 1148 -------ka~rRLLLTGTPIQNn-------L~ELwsLLnFLlP~iF----~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ 1209 (2239)
...++|+|||||..++ +..++.+..++....+ .....+..++..|............+...
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 234 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK- 234 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH-
T ss_pred hhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH-
Confidence 2246999999999877 3444444455553322 23345555555443221111110111111
Q ss_pred HHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHH-HHHHHh-cCcccCchhHHhhhhcChhhHH
Q 000101 1210 EKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKAT-GTLRVDPEDEKRRVQKNPIYQA 1287 (2239)
Q Consensus 1210 ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY-~~I~~~-~~l~l~~~~ek~~l~k~~~~~~ 1287 (2239)
......+.+++.++..++-. +. .+. .++. ..+.......| ..+... ......................
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~-l~-~~~-~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEE-LG-KLF-QIQN-------REFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYT 304 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHH-HH-GGG-GCCS-------CCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-hh-hhh-hccc-------ccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHH
Confidence 11112233344443322211 00 000 0100 00111000000 000000 0000000000000000000000
Q ss_pred HH---------------HHHHHHHHHHHHHHcCCCCCCCCCccccc-------------hhhHhhcccHHHHHHHHHHHH
Q 000101 1288 KV---------------YKTLNNRCMELRKTCNHPLLNYPYFSDLS-------------KDFLVKSCGKLWILDRILIKL 1339 (2239)
Q Consensus 1288 k~---------------~ksL~niImqLRKiCnHP~L~~p~~~~~s-------------~d~Li~~SGKLelLdrIL~kL 1339 (2239)
.. .......+..+-..+.+..+. .....+. .......++|+..|..+|..+
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 383 (555)
T 3tbk_A 305 SHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFD-ETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEE 383 (555)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC------HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHH
Confidence 00 000000000110001000000 0000000 000112478999999999988
Q ss_pred Hhc--CCeEEEEEccHHHHHHHHHHHHHcC------------CeEEeecCCCCHHHHHHHHHHHhc-CCCCccEEEEecc
Q 000101 1340 QRT--GHRVLLFSTMTKLLDILEEYLQWRQ------------LVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSIR 1404 (2239)
Q Consensus 1340 kat--GhKVLIFSQ~t~~LDILed~L~~rG------------iky~RLDGsts~eeRqeiL~~FNs-~ds~~~VfLLSTr 1404 (2239)
... ++|+||||+++.+++.|.++|...+ ..+..+||+++.++|.+++++|++ +... |||+|+
T Consensus 384 ~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~ 460 (555)
T 3tbk_A 384 YHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN---ILIATS 460 (555)
T ss_dssp HHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS---EEEECC
T ss_pred hccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee---EEEEcc
Confidence 654 4999999999999999999998764 345556679999999999999997 4433 688999
Q ss_pred ccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
++++||||++|++||+||+||||..|+||+|| |+.+.+.+|.|++
T Consensus 461 ~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~ 505 (555)
T 3tbk_A 461 VADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTS 505 (555)
T ss_dssp CTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEES
T ss_pred hhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEc
Confidence 99999999999999999999999999999999 4456777777755
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.5e-35 Score=389.47 Aligned_cols=414 Identities=15% Similarity=0.144 Sum_probs=219.0
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechH-HHHHHHHHHHHHCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~--~GP~LIVVP~S-LLsQW~~Ef~KwaP 1074 (2239)
..+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+. |+.||..+|.+|++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 45899999999999875 6789999999999999999998887753321 67899999965 99999999999997
Q ss_pred --CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hc-ccCCceEEEecccccccChhhHHHHHhhcc--
Q 000101 1075 --SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KL-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1147 (2239)
Q Consensus 1075 --slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L-~kikWd~VIIDEAHrIKN~~SKlskaLk~L-- 1147 (2239)
++.+..++|......... .....++|+|+||+.+..... .+ ...+|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~--~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~~ 398 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVE--KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 398 (797)
T ss_dssp GGTCCEEEECCC-----CHH--HHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHH--HhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHHH
Confidence 788888888864433221 122478999999999987643 23 345789999999999987544 22222222
Q ss_pred -------ccceEEEecCCCCCCCH----------HHHHHHHhhhc-CcccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000101 1148 -------RCQRRLLLTGTPLQNDL----------KELWSLLNLLL-PEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1209 (2239)
Q Consensus 1148 -------ka~rRLLLTGTPIQNnL----------~ELwsLLnFLl-P~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ 1209 (2239)
...++|+|||||.+++. .+||.+|++-. .........+..++..|............... .
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~ 477 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF-A 477 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHH-H
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHH-H
Confidence 22569999999987543 33444444311 11223345666666655433211111111111 1
Q ss_pred HHHHHHHHHHHHhhhhHHh----------------------hHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcC
Q 000101 1210 EKKVIIIHRLHQILEPFML----------------------RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 1267 (2239)
Q Consensus 1210 ee~~lii~RLhklLrPFmL----------------------RRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~ 1267 (2239)
.....+...++.+++.++- ...+......++.. .....+|..+.....
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~ 547 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICTE 547 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhccccc----------chhhHHHHHHHHHHH
Confidence 1112233444444433221 11111111111111 111111211110000
Q ss_pred cccCchhHHhhhhcChhhHHHHHHHHHHHHHH-----------------------HHHHcCCCCCCCCCccccchhhHhh
Q 000101 1268 LRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME-----------------------LRKTCNHPLLNYPYFSDLSKDFLVK 1324 (2239)
Q Consensus 1268 l~l~~~~ek~~l~k~~~~~~k~~ksL~niImq-----------------------LRKiCnHP~L~~p~~~~~s~d~Li~ 1324 (2239)
. +........+... .........+...+.. +...+..+ ..
T Consensus 548 ~-l~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~---------------~~ 610 (797)
T 4a2q_A 548 H-LRKYNDALIISED-ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDE---------------TN 610 (797)
T ss_dssp H-HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCT---------------TC
T ss_pred H-HHHHHHHHhhhcc-ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCC---------------CC
Confidence 0 0000000000000 0000001111111111 11111111 12
Q ss_pred cccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHc------------CCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1325 SCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~r------------Giky~RLDGsts~eeRqeiL~~FN 1390 (2239)
.++|+..|..+|.+.. ..++|+||||+++.+++.|.++|... |..+..+||+++.++|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 4779999999998854 56799999999999999999999863 566777889999999999999999
Q ss_pred c-CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1391 S-HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1391 s-~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+ +... |||+|+++++||||++|++||+||+||||..|+||+|| +|. +.+.+|.|++
T Consensus 691 ~~g~~~---vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~ 747 (797)
T 4a2q_A 691 TSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 747 (797)
T ss_dssp ---CCS---EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEEC
T ss_pred ccCCce---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 7 4434 79999999999999999999999999999999999999 665 5666676654
No 10
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=7.5e-37 Score=356.43 Aligned_cols=236 Identities=25% Similarity=0.360 Sum_probs=174.7
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
--+||+|++|..+||++.+.+++|+|++.|+.+|+.+.......+. ... .......+++.++.||++|+
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~---------~~~--~~~~~~~~l~~l~~Lrq~~~ 80 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID---------SVT--GIKRKGMILSTLLKLKQIVD 80 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT---------TCC--HHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHH---------hcc--ccchHHHHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999988654211111 000 01123457788999999999
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Giky~RLDGsts~eeRqe 1384 (2239)
||+++... ..++..++|+..|.++|..+...++||||||+++.++++|+.+|... |+.+.+|||+++.++|.+
T Consensus 81 hP~l~~~~------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~ 154 (271)
T 1z5z_A 81 HPALLKGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDD 154 (271)
T ss_dssp CTHHHHCS------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHH
T ss_pred CHHHhcCC------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHH
Confidence 99886421 12456789999999999999989999999999999999999999985 999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhh
Q 000101 1385 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE 1464 (2239)
Q Consensus 1385 iL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~e 1464 (2239)
+++.|+.+ ..+.|||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|.||+|++
T Consensus 155 ~i~~F~~~-~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~----------- 222 (271)
T 1z5z_A 155 IISKFQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS----------- 222 (271)
T ss_dssp HHHHHHHC-TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEE-----------
T ss_pred HHHHhcCC-CCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEee-----------
Confidence 99999974 356789999999999999999999999999999999999999999999999999999976
Q ss_pred hhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhcc
Q 000101 1465 DELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1512 (2239)
Q Consensus 1465 Ke~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAG 1512 (2239)
.++||+.|++ ++..|..+.+.+++++
T Consensus 223 ---------------------~~TiEe~i~~-~~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 223 ---------------------VGTLEEKIDQ-LLAFKRSLFKDIISSG 248 (271)
T ss_dssp ---------------------TTSHHHHHHH-HHHHCHHHHTTGGGGT
T ss_pred ---------------------CCCHHHHHHH-HHHHHHHHHHHHHccC
Confidence 2799999998 4678999999998765
No 11
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=5.5e-35 Score=390.27 Aligned_cols=415 Identities=16% Similarity=0.155 Sum_probs=220.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CCCCeEEEechH-HHHHHHHHHHHHCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~--~~GP~LIVVP~S-LLsQW~~Ef~KwaP 1074 (2239)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..++.... ..+++|||||+. |+.||..+|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 35899999999999975 678999999999999999888877654321 167899999965 99999999999987
Q ss_pred --CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--c-ccCCceEEEecccccccChhhHHHHHhhcc--
Q 000101 1075 --SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1147 (2239)
Q Consensus 1075 --slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrIKN~~SKlskaLk~L-- 1147 (2239)
++.+.+++|....+.... .....++|+|+||+.|...... + ....|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~--~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~ 398 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVE--KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 398 (936)
T ss_dssp TTTCCEEEECCC-----CCH--HHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHH--HhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHHH
Confidence 788888888764432211 1123579999999999876432 2 344689999999999987654 33333332
Q ss_pred -------ccceEEEecCCCCCCCHH----------HHHHHHhhhc-CcccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000101 1148 -------RCQRRLLLTGTPLQNDLK----------ELWSLLNLLL-PEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1209 (2239)
Q Consensus 1148 -------ka~rRLLLTGTPIQNnL~----------ELwsLLnFLl-P~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ 1209 (2239)
...++|+|||||.+++.. +||.+|+.-. .........+..++..|................
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~- 477 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA- 477 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH-
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH-
Confidence 225699999999886543 3333333211 112223456666666554332111111111111
Q ss_pred HHHHHHHHHHHHhhhhH----------------------HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcC
Q 000101 1210 EKKVIIIHRLHQILEPF----------------------MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 1267 (2239)
Q Consensus 1210 ee~~lii~RLhklLrPF----------------------mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~ 1267 (2239)
.....+...++.++..+ +....+......+|.. .....+|..+.....
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~----------~~~~~~~~~l~~~~~ 547 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICTE 547 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhccccc----------chhhHHHHHHHHHHH
Confidence 11111223333333221 2222222122222221 111111111100000
Q ss_pred cccCchhHHhhhh----------------------cChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhc
Q 000101 1268 LRVDPEDEKRRVQ----------------------KNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKS 1325 (2239)
Q Consensus 1268 l~l~~~~ek~~l~----------------------k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~ 1325 (2239)
. +........+. ............+...+..|...+.++. ..
T Consensus 548 ~-l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~---------------~~ 611 (936)
T 4a2w_A 548 H-LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDET---------------NE 611 (936)
T ss_dssp H-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTT---------------CC
T ss_pred H-HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccC---------------CC
Confidence 0 00000000000 0000000011111222223333332221 23
Q ss_pred ccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHc------------CCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1326 CGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1326 SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~r------------Giky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
++|+..|..+|.+.. ..++|+||||+++.+++.|.++|... |..+..+||+++..+|.+++++|+.
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc
Confidence 679999999998864 55799999999999999999999976 5566677888999999999999997
Q ss_pred -CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1392 -HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1392 -~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+... |||+|+++++||||+.|++||+||+|||+..++||+|| +|. +.+.||.|++
T Consensus 692 ~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~---~~g~vi~Li~ 747 (936)
T 4a2w_A 692 SKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 747 (936)
T ss_dssp --CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEES
T ss_pred cCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCCEEEEEEe
Confidence 4433 79999999999999999999999999999999999999 565 5566666644
No 12
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.1e-33 Score=361.53 Aligned_cols=420 Identities=16% Similarity=0.178 Sum_probs=219.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~--~GP~LIVVP~-SLLsQW~~Ef~KwaP- 1074 (2239)
.+|+|||.+++.|++. +.++|++++||+|||++++.++...+..... .+++|||+|+ .|+.||..+|.+|++
T Consensus 12 ~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 4899999999999986 7789999999999999999988877654332 2689999997 699999999999997
Q ss_pred -CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hc-ccCCceEEEecccccccChhhHHHHH---hhc-
Q 000101 1075 -SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KL-SKVDWKYIIIDEAQRMKDRESVLARD---LDR- 1146 (2239)
Q Consensus 1075 -slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L-~kikWd~VIIDEAHrIKN~~SKlska---Lk~- 1146 (2239)
++.+..+.|+...+..... .....+|+|+||+.|.+... .+ ...+|++|||||||++.+...-.... +..
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~--~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~ 165 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQ--IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQK 165 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHH--HHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCccccccHHH--hccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHh
Confidence 6788888887543322211 12368999999999987643 23 45578999999999998765322211 111
Q ss_pred c-----ccceEEEecCCCCCCC-------HHHHHHHHhhhcCcccCC----hHHHHhhhcCCcccCCCCCCCChhhHHHH
Q 000101 1147 Y-----RCQRRLLLTGTPLQND-------LKELWSLLNLLLPEVFDN----RKAFHDWFSQPFQKEGPTHNADDDWLETE 1210 (2239)
Q Consensus 1147 L-----ka~rRLLLTGTPIQNn-------L~ELwsLLnFLlP~iF~s----~k~F~e~F~kPf~~~g~~~~~e~d~l~~e 1210 (2239)
+ ...++|+|||||..++ +.+|+.++..+....+.. ......++..|..............+..
T Consensus 166 ~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~- 244 (696)
T 2ykg_A 166 LGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKY- 244 (696)
T ss_dssp HTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHH-
T ss_pred hcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHH-
Confidence 1 3467899999998543 555666666555544322 2334444444421110000000000100
Q ss_pred HHHHHHHHHHHhh-----------------------hhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcC
Q 000101 1211 KKVIIIHRLHQIL-----------------------EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 1267 (2239)
Q Consensus 1211 e~~lii~RLhklL-----------------------rPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~ 1267 (2239)
....+...+..+. ..+++++.+......+|.+... ...-..++.....-.
T Consensus 245 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~l~- 317 (696)
T 2ykg_A 245 IIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEE------SRICKALFLYTSHLR- 317 (696)
T ss_dssp HHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCH------HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhh------hHHHHHHHHHHHHHH-
Confidence 0000001111111 1122222222222222221110 000001111000000
Q ss_pred cccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhH-----------------hhcccHHH
Q 000101 1268 LRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFL-----------------VKSCGKLW 1330 (2239)
Q Consensus 1268 l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~L-----------------i~~SGKLe 1330 (2239)
.......+... .........+...+..++... ........+ ...+.|+.
T Consensus 318 ----~~~~~~~i~~~-~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~ 383 (696)
T 2ykg_A 318 ----KYNDALIISEH-ARMKDALDYLKDFFSNVRAAG---------FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 383 (696)
T ss_dssp ----HHHHHHHHHHH-SCHHHHHHHHHHHHHHHHTTC---------CCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHH
T ss_pred ----HHhHHHhccch-hhHHHHHHHHHHHHHHHhhcc---------cchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 00000000000 000000111111111111000 000000000 02467999
Q ss_pred HHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHcC----CeEEeecC--------CCCHHHHHHHHHHHhc-CCCC
Q 000101 1331 ILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDG--------TTSLEDRESAIVDFNS-HDSD 1395 (2239)
Q Consensus 1331 lLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~rG----iky~RLDG--------sts~eeRqeiL~~FNs-~ds~ 1395 (2239)
.|..+|.... ..++++||||+++..++.|.++|...| +.+..++| +++.++|.+++++|+. +...
T Consensus 384 ~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~ 463 (696)
T 2ykg_A 384 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 463 (696)
T ss_dssp HHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCS
T ss_pred HHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc
Confidence 9999998774 357899999999999999999999988 89999954 9999999999999996 4444
Q ss_pred ccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1396 CFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1396 ~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|||+|+++++|||+++|++||+||+|||+..|.||+|| +|. +...++.+++
T Consensus 464 ---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~ 514 (696)
T 2ykg_A 464 ---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTS 514 (696)
T ss_dssp ---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEES
T ss_pred ---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEec
Confidence 58999999999999999999999999999999999999 886 3445555544
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.5e-33 Score=348.70 Aligned_cols=337 Identities=13% Similarity=0.135 Sum_probs=244.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHH--CCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKW--LPSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~Kw--aPsl 1076 (2239)
+|+|||.+++.+++. +.++||+++||+|||++++.++..++.. ..+++|||||+ .|+.||..+|.+| ++.+
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~ 186 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCGG
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCcc
Confidence 899999999999886 4678999999999999998888776652 23589999997 5889999999999 5666
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-ccceEEEe
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLL 1155 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~rRLLL 1155 (2239)
.+..+.|......+ .....+|+|+||+.+.+.... ...+|++|||||||++.+. .....+..+ .+.++|+|
T Consensus 187 ~v~~~~~~~~~~~~-----~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~l 258 (510)
T 2oca_A 187 MIKKIGGGASKDDK-----YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGL 258 (510)
T ss_dssp GEEECGGGCCTTGG-----GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEEE
T ss_pred ceEEEecCCccccc-----cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEEEE
Confidence 77777766443222 235789999999998776332 2347999999999999863 345556777 56789999
Q ss_pred cCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhh
Q 000101 1156 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDV 1235 (2239)
Q Consensus 1156 TGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDV 1235 (2239)
|||| .+...++|.+..++.+.++.. + .....+
T Consensus 259 SATp-~~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~-------------------------------- 290 (510)
T 2oca_A 259 SGSL-RDGKANIMQYVGMFGEIFKPV----------T-----TSKLME-------------------------------- 290 (510)
T ss_dssp ESCG-GGCSSCHHHHHHHHCSEECCC----------C-----CC------------------------------------
T ss_pred EeCC-CCCcccHHHhHHhhCCeEEee----------C-----HHHHhh--------------------------------
Confidence 9999 555566777777665544211 0 000000
Q ss_pred hcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Q 000101 1236 EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1315 (2239)
Q Consensus 1236 ekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~ 1315 (2239)
...+++.....+.+.++........ + ..+ .. .+..++
T Consensus 291 ~~~l~~~~~~~~~~~~~~~~~~~~~-----~----------------~~~-----~~------~~~~~~----------- 327 (510)
T 2oca_A 291 DGQVTELKINSIFLRYPDEFTTKLK-----G----------------KTY-----QE------EIKIIT----------- 327 (510)
T ss_dssp -----CCEEEEEEEECCHHHHHHHT-----T----------------CCH-----HH------HHHHHH-----------
T ss_pred CCcCCCceEEEEeecCChHHhcccc-----c----------------cch-----HH------HHHHHh-----------
Confidence 0135556666666666654431100 0 000 00 011111
Q ss_pred ccchhhHhhcccHHHHHHHHHHHHHhc-CCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCC
Q 000101 1316 DLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1394 (2239)
Q Consensus 1316 ~~s~d~Li~~SGKLelLdrIL~kLkat-GhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds 1394 (2239)
....|...+..++..+... +.++||||. +..++.|.++|...+..+..+||+++.++|.++++.|++++.
T Consensus 328 --------~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~ 398 (510)
T 2oca_A 328 --------GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKG 398 (510)
T ss_dssp --------TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCS
T ss_pred --------ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCC
Confidence 1123555566666665444 556677777 888888999999998899999999999999999999997544
Q ss_pred CccEEEEec-cccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcc-eEEEEEEeh
Q 000101 1395 DCFIFLLSI-RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1453 (2239)
Q Consensus 1395 ~~~VfLLST-rAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkK-eV~VyrLva 1453 (2239)
. +||+| .++++|||++.+++||++|++||+..+.|++||++|.|+.+ .|.||.+..
T Consensus 399 ~---vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 399 I---IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp C---EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred C---EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeec
Confidence 4 67777 99999999999999999999999999999999999999987 788888754
No 14
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=5.4e-33 Score=357.95 Aligned_cols=395 Identities=17% Similarity=0.222 Sum_probs=233.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechH-HHHHH-HHHHHHHC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNA-VLVNW-KSELHKWL 1073 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k---~~~GP~LIVVP~S-LLsQW-~~Ef~Kwa 1073 (2239)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++... +..+++|||||+. |+.|| ..+|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 4799999999999987 67899999999999999999888766532 2337899999975 88999 99999999
Q ss_pred CC-CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--------hhcccCCceEEEecccccccChhh---HHH
Q 000101 1074 PS-VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKDRES---VLA 1141 (2239)
Q Consensus 1074 Ps-lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--------s~L~kikWd~VIIDEAHrIKN~~S---Kls 1141 (2239)
+. +.+..+.|......... ......+|+|+||+.|.... ..+....|++|||||||++.+... ...
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~--~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~ 159 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFP--EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 159 (699)
T ss_dssp TTTSCEEEEC----CCCCHH--HHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHH
T ss_pred CcCceEEEEeCCcchhhHHH--hhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHH
Confidence 87 88888888754432211 11257899999999998654 234556899999999999854221 111
Q ss_pred HHhhc-c-------------ccceEEEecCCCCCCC-------HHHHHHHHhhhcC-ccc---CChHHHHhhhcCCcccC
Q 000101 1142 RDLDR-Y-------------RCQRRLLLTGTPLQND-------LKELWSLLNLLLP-EVF---DNRKAFHDWFSQPFQKE 1196 (2239)
Q Consensus 1142 kaLk~-L-------------ka~rRLLLTGTPIQNn-------L~ELwsLLnFLlP-~iF---~s~k~F~e~F~kPf~~~ 1196 (2239)
..+.. + ...++|+|||||..++ ..++..++..+.+ .+. .....+..++..|....
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 12211 1 4457899999999863 3344445555555 222 12244555554443211
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHH----HHHhc----Cc
Q 000101 1197 GPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW----IKATG----TL 1268 (2239)
Q Consensus 1197 g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~----I~~~~----~l 1268 (2239)
........+.. ...+..+...+..++ ++.+.. .+.. ..|.. +.... ..
T Consensus 240 ~~~~~~~~~~~-----~~~l~~l~~~i~~~~----------~~~~~~------~~g~---~~~~~~~~~~~~~~~~~~~~ 295 (699)
T 4gl2_A 240 AIADATREDPF-----KEKLLEIMTRIQTYC----------QMSPMS------DFGT---QPYEQWAIQMEKKAAKEGNR 295 (699)
T ss_dssp EEEC-----CH-----HHHHHHHHHHHHHHH----------TCCCCS------CSSS---HHHHHHHHHHHHHHHHHTCT
T ss_pred EEcccccCChH-----HHHHHHHHHHHHHHh----------ccCcch------hccc---hHHHHHHHHHHHHHHHhhhh
Confidence 10000000000 011111211111111 010000 0000 00110 00000 00
Q ss_pred ccCchhHHhhhh------cChhhHHHHHHHHHHHHH------------------------------------HHHHHcCC
Q 000101 1269 RVDPEDEKRRVQ------KNPIYQAKVYKTLNNRCM------------------------------------ELRKTCNH 1306 (2239)
Q Consensus 1269 ~l~~~~ek~~l~------k~~~~~~k~~ksL~niIm------------------------------------qLRKiCnH 1306 (2239)
............ .........+..+...+. .|..+...
T Consensus 296 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 375 (699)
T 4gl2_A 296 KERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAEN 375 (699)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 000000000000 000000000011111111 11222211
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhc---CCeEEEEEccHHHHHHHHHHHHHc------CCeEEeecCC-
Q 000101 1307 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT---GHRVLLFSTMTKLLDILEEYLQWR------QLVYRRIDGT- 1376 (2239)
Q Consensus 1307 P~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkat---GhKVLIFSQ~t~~LDILed~L~~r------Giky~RLDGs- 1376 (2239)
+. ..+.|+..|..+|...... +.++||||+++.+++.|.++|... |+.+..+||+
T Consensus 376 ~~---------------~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~ 440 (699)
T 4gl2_A 376 PE---------------YENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAG 440 (699)
T ss_dssp CC-------------------CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSC
T ss_pred CC---------------CCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCC
Confidence 10 0245677777777765443 789999999999999999999987 8999999999
Q ss_pred -------CCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccC
Q 000101 1377 -------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1441 (2239)
Q Consensus 1377 -------ts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIG 1441 (2239)
++..+|.+++++|++++.. |||+|+++++||||+++++||+||+|||+..|.||+|||+|-|
T Consensus 441 ~~~~~~~~~~~eR~~~~~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 441 HSSEFKPMTQNEQKEVISKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CCTTCCCCCHHHHHHHHHHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CccCCCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 9999999999999975544 6899999999999999999999999999999999999986655
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.9e-31 Score=317.63 Aligned_cols=316 Identities=16% Similarity=0.164 Sum_probs=225.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---Ps 1075 (2239)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||+. |+.||..++.+|. ++
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998876 678999999999999998877766543233445899999975 8899999999986 46
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChhh---HHHHHhhccc-c
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYR-C 1149 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~S---KlskaLk~Lk-a 1149 (2239)
+.+.++.|........ ..+....++|+|+||+.+..... .+...+|++|||||||++.+... .+...+..+. .
T Consensus 106 ~~~~~~~g~~~~~~~~-~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~ 184 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDE-EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 184 (391)
T ss_dssp CCEEEECTTSCHHHHH-HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSS
T ss_pred eEEEEEeCCCCHHHHH-HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCC
Confidence 7888888875543322 22344567999999999976532 24445899999999999976322 2222333333 4
Q ss_pred ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhh
Q 000101 1150 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1229 (2239)
Q Consensus 1150 ~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLR 1229 (2239)
..+++|||||-.. ..++. ..++..|........
T Consensus 185 ~~~i~~SAT~~~~-~~~~~-----------------~~~~~~~~~~~~~~~----------------------------- 217 (391)
T 1xti_A 185 KQVMMFSATLSKE-IRPVC-----------------RKFMQDPMEIFVDDE----------------------------- 217 (391)
T ss_dssp SEEEEEESSCCST-HHHHH-----------------HHHCSSCEEEECCCC-----------------------------
T ss_pred ceEEEEEeeCCHH-HHHHH-----------------HHHcCCCeEEEecCc-----------------------------
Confidence 5689999997432 11110 111111110000000
Q ss_pred HhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
....+.......+.+
T Consensus 218 -----~~~~~~~~~~~~~~~------------------------------------------------------------ 232 (391)
T 1xti_A 218 -----TKLTLHGLQQYYVKL------------------------------------------------------------ 232 (391)
T ss_dssp -----CCCCCTTCEEEEEEC------------------------------------------------------------
T ss_pred -----cccCcccceEEEEEc------------------------------------------------------------
Confidence 000000001111111
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHH
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1389 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~F 1389 (2239)
....|...|..++... .++++||||+....++.+..+|...|+.+..+||+++.++|..+++.|
T Consensus 233 --------------~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 296 (391)
T 1xti_A 233 --------------KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 296 (391)
T ss_dssp --------------CGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred --------------CchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 1122444555555543 578999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1390 Ns~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
++++.. +|++|+++++|||++.+++||+||+|||+..+.|++||++|.|++..+.++..
T Consensus 297 ~~~~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 355 (391)
T 1xti_A 297 KDFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 355 (391)
T ss_dssp HTTCCS---EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEEC
T ss_pred hcCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEc
Confidence 975444 79999999999999999999999999999999999999999998877766654
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.6e-32 Score=345.39 Aligned_cols=353 Identities=15% Similarity=0.145 Sum_probs=217.2
Q ss_pred CCCChHHHHHHHHHHHHhhcCC-CCeEEEcCCCchHHHHHHHHHHHHHHHh------CCCCCeEEEech-HHHHHHH-HH
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNK-LNGILADEMGLGKTVQVMALIAYLMEFK------GNYGPHLIIVPN-AVLVNWK-SE 1068 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~-lnGILADEMGLGKTIQAIALIa~Lie~k------~~~GP~LIVVP~-SLLsQW~-~E 1068 (2239)
+.+|+|||.+++.+++..+.++ .++||+++||+|||++++.++..++... ...+++|||||. .|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3589999999999999877655 4579999999999999999888887532 156789999995 5889999 88
Q ss_pred HHHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh------hhcccCCceEEEecccccccChh-hHHH
Q 000101 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR------SKLSKVDWKYIIIDEAQRMKDRE-SVLA 1141 (2239)
Q Consensus 1069 f~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~------s~L~kikWd~VIIDEAHrIKN~~-SKls 1141 (2239)
|..|.+.+ ..+.+. ......+|+|+||+.+.... ..+....|++|||||||++.+.. ....
T Consensus 256 ~~~~~~~~--~~~~~~----------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~ 323 (590)
T 3h1t_A 256 FTPFGDAR--HKIEGG----------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWR 323 (590)
T ss_dssp CTTTCSSE--EECCC------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CH
T ss_pred HHhcchhh--hhhhcc----------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHH
Confidence 88876532 222221 12346799999999997652 33445579999999999997653 3444
Q ss_pred HHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000101 1142 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221 (2239)
Q Consensus 1142 kaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhk 1221 (2239)
..+..+...++|+|||||..+...+++.++. .++.... +..
T Consensus 324 ~il~~~~~~~~l~lTATP~~~~~~~~~~~f~------------------~~~~~~~---------------------~~~ 364 (590)
T 3h1t_A 324 EILEYFEPAFQIGMTATPLREDNRDTYRYFG------------------NPIYTYS---------------------LRQ 364 (590)
T ss_dssp HHHHHSTTSEEEEEESSCSCTTTHHHHHHSC------------------SCSEEEC---------------------HHH
T ss_pred HHHHhCCcceEEEeccccccccchhHHHHcC------------------CceEecC---------------------HHH
Confidence 5556677788999999999988776665542 1111100 000
Q ss_pred hhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1222 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1222 lLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
.+. + ..+++.....+.+....................+. ..
T Consensus 365 ~i~---------~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----------------------- 405 (590)
T 3h1t_A 365 GID---------D--GFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP-----DG----------------------- 405 (590)
T ss_dssp HHH---------H--TSSCCEEEEEEEETTCC------------------------------------------------
T ss_pred Hhh---------C--CccCCcEEEEeeeeeeccccccccccccccccccc-----cc-----------------------
Confidence 000 0 11223333333332221111000000000000000 00
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH---hcCCeEEEEEccHHHHHHHHHHHHHcCCe--------E
Q 000101 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ---RTGHRVLLFSTMTKLLDILEEYLQWRQLV--------Y 1370 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLk---atGhKVLIFSQ~t~~LDILed~L~~rGik--------y 1370 (2239)
.+.....+..+....+...+.+.|.++. ..+.|+||||+.+.+++.|.+.|...+.. +
T Consensus 406 -----------~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 474 (590)
T 3h1t_A 406 -----------EYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYV 474 (590)
T ss_dssp --------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSE
T ss_pred -----------cCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeE
Confidence 0000000001111122233333232221 34689999999999999999999876543 6
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCC---cceEE
Q 000101 1371 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ---KREVK 1447 (2239)
Q Consensus 1371 ~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQ---kKeV~ 1447 (2239)
..++|.++ ++|.+++++|++++.++.+||+||+++++|||++.+++||+|+++||+..|.|++||++|+|. +..+.
T Consensus 475 ~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~ 553 (590)
T 3h1t_A 475 ARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFN 553 (590)
T ss_dssp EECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEE
T ss_pred EEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEE
Confidence 78999986 479999999998777788999999999999999999999999999999999999999999995 56788
Q ss_pred EEEEe
Q 000101 1448 VIYME 1452 (2239)
Q Consensus 1448 VyrLv 1452 (2239)
|+.++
T Consensus 554 I~D~~ 558 (590)
T 3h1t_A 554 IIDYT 558 (590)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 88887
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.98 E-value=7.6e-31 Score=314.43 Aligned_cols=312 Identities=17% Similarity=0.196 Sum_probs=222.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
+|+|||.+++.+++. +.++|++.+||+|||++++..+...+.......++|||||+. |+.||..++.++++ ++
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 699999999999986 677999999999999998877766553333455899999975 88899999999986 46
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChhh--HHHHHhhccc-cce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLDRYR-CQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~S--KlskaLk~Lk-a~r 1151 (2239)
.+..+.|......... .....++|+|+||+.+..... .+...+|++|||||||++.+... .+...+..+. ...
T Consensus 119 ~~~~~~g~~~~~~~~~--~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~ 196 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDIL--RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 196 (400)
T ss_dssp CEEEECSSSCHHHHHH--HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCE
T ss_pred eEEEEeCCcchHHHHH--HhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCce
Confidence 6777777765443322 223578999999999876532 23445789999999999876432 2222333333 456
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.++||||+-. .+..+ +..++..|+.....
T Consensus 197 ~i~lSAT~~~----~~~~~--------------~~~~~~~~~~~~~~--------------------------------- 225 (400)
T 1s2m_A 197 SLLFSATFPL----TVKEF--------------MVKHLHKPYEINLM--------------------------------- 225 (400)
T ss_dssp EEEEESCCCH----HHHHH--------------HHHHCSSCEEESCC---------------------------------
T ss_pred EEEEEecCCH----HHHHH--------------HHHHcCCCeEEEec---------------------------------
Confidence 8999999621 11100 01111111100000
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
.. ...+........+
T Consensus 226 -~~--~~~~~~~~~~~~~-------------------------------------------------------------- 240 (400)
T 1s2m_A 226 -EE--LTLKGITQYYAFV-------------------------------------------------------------- 240 (400)
T ss_dssp -SS--CBCTTEEEEEEEC--------------------------------------------------------------
T ss_pred -cc--cccCCceeEEEEe--------------------------------------------------------------
Confidence 00 0000000001000
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
....|+..|..++... .+.++||||+....++.+..+|...|+.+..+||+++.++|..+++.|++
T Consensus 241 ------------~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 306 (400)
T 1s2m_A 241 ------------EERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ 306 (400)
T ss_dssp ------------CGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred ------------chhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc
Confidence 1123555555555542 46799999999999999999999999999999999999999999999997
Q ss_pred CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1392 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1392 ~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+... +|++|+++++|||++++++||+||++||+..+.||+||++|.|+...|.+++
T Consensus 307 g~~~---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~ 362 (400)
T 1s2m_A 307 GKVR---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI 362 (400)
T ss_dssp TSSS---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEE
T ss_pred CCCc---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEe
Confidence 5444 7999999999999999999999999999999999999999999877665554
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=9.8e-31 Score=314.92 Aligned_cols=315 Identities=18% Similarity=0.208 Sum_probs=225.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--V 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs--l 1076 (2239)
+|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||+. |+.||..+|.+|... +
T Consensus 59 ~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 699999999999886 678999999999999999887776553334557899999976 889999999999854 5
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhhccc-cce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-CQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~Lk-a~r 1151 (2239)
.+..+.|.......... .....+|+|+||+.+..... .+....|++|||||||++.+.. ..+...+..+. ...
T Consensus 135 ~~~~~~g~~~~~~~~~~--~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~ 212 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRK--LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 212 (410)
T ss_dssp CEEEECTTSCHHHHHHH--HHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCE
T ss_pred EEEEEECCCCHHHHHHH--hhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCce
Confidence 56666666544433221 22467999999999876532 3445679999999999987644 33444444453 456
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.++|||||-. ++..++. .++..|+....
T Consensus 213 ~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~---------------------------------- 240 (410)
T 2j0s_A 213 VVLISATLPH----EILEMTN--------------KFMTDPIRILV---------------------------------- 240 (410)
T ss_dssp EEEEESCCCH----HHHTTGG--------------GTCSSCEEECC----------------------------------
T ss_pred EEEEEcCCCH----HHHHHHH--------------HHcCCCEEEEe----------------------------------
Confidence 8999999721 1111111 01111110000
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
......++......+.+.-
T Consensus 241 -~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 259 (410)
T 2j0s_A 241 -KRDELTLEGIKQFFVAVER------------------------------------------------------------ 259 (410)
T ss_dssp -CGGGCSCTTEEEEEEEESS------------------------------------------------------------
T ss_pred -cCccccCCCceEEEEEeCc------------------------------------------------------------
Confidence 0000001111111111110
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
...|+..|..++... ...++||||+....++.|..+|...|+.+..+||+++..+|..+++.|++
T Consensus 260 -------------~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 324 (410)
T 2j0s_A 260 -------------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 324 (410)
T ss_dssp -------------TTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH
T ss_pred -------------HHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC
Confidence 011444555555543 35699999999999999999999999999999999999999999999997
Q ss_pred CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1392 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1392 ~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
+... +|++|+++++|||++++++||+||++|++..|.||+||++|.|++..+.++..
T Consensus 325 g~~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (410)
T 2j0s_A 325 GASR---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 381 (410)
T ss_dssp TSSC---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred CCCC---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEec
Confidence 5544 78999999999999999999999999999999999999999998876665543
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=5.7e-31 Score=309.35 Aligned_cols=307 Identities=20% Similarity=0.252 Sum_probs=220.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
+|+|||.+++.+++. .+.++|++.+||+|||++++.++..++. .....++|||||.. |+.||.+++.+|++ .+
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhc-ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 799999999999876 2357899999999999998887766553 23456899999975 78999999999986 45
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhhcc-ccce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY-RCQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~L-ka~r 1151 (2239)
.+..+.|......... .....+|+|+||+.+..... .+...+|++|||||||++.+.. ..+...+..+ ...+
T Consensus 104 ~v~~~~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~ 180 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIK---ALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKR 180 (367)
T ss_dssp CEEEECTTSCHHHHHH---HHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCE
T ss_pred eEEEEECCcchHHHHh---hcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCce
Confidence 6666666654433221 12378999999999986543 2344578999999999997644 3344444444 3456
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.++|||||-.. +..++. .++..+..
T Consensus 181 ~i~~SAT~~~~----~~~~~~--------------~~~~~~~~------------------------------------- 205 (367)
T 1hv8_A 181 ILLFSATMPRE----ILNLAK--------------KYMGDYSF------------------------------------- 205 (367)
T ss_dssp EEEECSSCCHH----HHHHHH--------------HHCCSEEE-------------------------------------
T ss_pred EEEEeeccCHH----HHHHHH--------------HHcCCCeE-------------------------------------
Confidence 78899998321 111110 01100000
Q ss_pred HhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1232 VEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1232 KkDVekdLP~K~e-~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
+....+.... ..+.+
T Consensus 206 ---~~~~~~~~~~~~~~~~------------------------------------------------------------- 221 (367)
T 1hv8_A 206 ---IKAKINANIEQSYVEV------------------------------------------------------------- 221 (367)
T ss_dssp ---EECCSSSSSEEEEEEC-------------------------------------------------------------
T ss_pred ---EEecCCCCceEEEEEe-------------------------------------------------------------
Confidence 0000000000 00000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
....|+..|..++. ..+.++||||+....++.+.++|...|+.+..+||+++.++|.++++.|+
T Consensus 222 -------------~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 285 (367)
T 1hv8_A 222 -------------NENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFK 285 (367)
T ss_dssp -------------CGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHH
T ss_pred -------------ChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 01124444444333 56789999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
++... +|++|+++++|||++++++||+||++||+..+.|++||++|.|+...+.++..
T Consensus 286 ~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 343 (367)
T 1hv8_A 286 QKKIR---ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 343 (367)
T ss_dssp TTSSS---EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEEC
T ss_pred cCCCe---EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEc
Confidence 75443 78999999999999999999999999999999999999999998887766653
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=312.08 Aligned_cols=316 Identities=19% Similarity=0.228 Sum_probs=214.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--s 1075 (2239)
..+++||.+++.+++. +.++|++.+||+|||++++..+...+......+.+|||||+. |+.||..++.+++. .
T Consensus 61 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 3799999999998886 677999999999999998887776654344567899999976 88999999999874 4
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhccc-cc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lk-a~ 1150 (2239)
+.+..+.|....... ........++|+|+|++.+..... .+....|++|||||||++.+. ...+...+..+. ..
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 215 (414)
T 3eiq_A 137 ASCHACIGGTNVRAE-VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 215 (414)
T ss_dssp CCEEECCCCTTHHHH-HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTC
T ss_pred ceEEEEECCcchHHH-HHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCC
Confidence 555566665544333 233444678999999999876543 344556899999999998543 345555666664 44
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
+.++|||||-. ++..++.. ++..+........
T Consensus 216 ~~i~~SAT~~~----~~~~~~~~--------------~~~~~~~~~~~~~------------------------------ 247 (414)
T 3eiq_A 216 QVVLLSATMPS----DVLEVTKK--------------FMRDPIRILVKKE------------------------------ 247 (414)
T ss_dssp EEEEECSCCCH----HHHHHHTT--------------TCSSCEEECCCCC------------------------------
T ss_pred eEEEEEEecCH----HHHHHHHH--------------HcCCCEEEEecCC------------------------------
Confidence 57889999821 11111110 0111100000000
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
. ..++...... ..
T Consensus 248 ---~--~~~~~~~~~~--------------------------------------------------------------~~ 260 (414)
T 3eiq_A 248 ---E--LTLEGIRQFY--------------------------------------------------------------IN 260 (414)
T ss_dssp ---C--CCTTSCCEEE--------------------------------------------------------------EE
T ss_pred ---c--cCCCCceEEE--------------------------------------------------------------EE
Confidence 0 0000000000 00
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
......|+..|..++... .+.++||||+....++.+.+.|...++.+..+||+++.++|..+++.|+
T Consensus 261 -----------~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~ 327 (414)
T 3eiq_A 261 -----------VEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 327 (414)
T ss_dssp -----------CSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHS
T ss_pred -----------eChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHH
Confidence 001123666777766643 4679999999999999999999999999999999999999999999998
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++... +|++|+++++|||++++++||+||++||+..|.||+||++|.|+...+.+++
T Consensus 328 ~g~~~---vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 384 (414)
T 3eiq_A 328 SGSSR---VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMV 384 (414)
T ss_dssp CC------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEE
T ss_pred cCCCc---EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEE
Confidence 64433 6999999999999999999999999999999999999999999887665554
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=1.7e-29 Score=299.69 Aligned_cols=313 Identities=16% Similarity=0.175 Sum_probs=217.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
+|+|||.+++.+++.. ++.++|++.+||+|||++++..+...+......+++|||||+. |+.||..++.++.. .+
T Consensus 27 ~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 104 (395)
T 3pey_A 27 KPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI 104 (395)
T ss_dssp SCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCe
Confidence 7999999999988752 2378899999999999998887776554344566899999977 88999999999874 34
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChh---hHHHHHhhccc-cc
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~---SKlskaLk~Lk-a~ 1150 (2239)
.+..+.+..... ......+|+|+|++.+.... ..+...+|++|||||||++.+.. ......+..+. ..
T Consensus 105 ~~~~~~~~~~~~------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~ 178 (395)
T 3pey_A 105 TSQLIVPDSFEK------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT 178 (395)
T ss_dssp CEEEESTTSSCT------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTC
T ss_pred eEEEEecCchhh------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCc
Confidence 555555543322 12346899999999997653 23445579999999999986422 22222333333 34
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
..++|||||-. .+..++..+ +..+.....
T Consensus 179 ~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~--------------------------------- 207 (395)
T 3pey_A 179 QLVLFSATFAD----AVRQYAKKI--------------VPNANTLEL--------------------------------- 207 (395)
T ss_dssp EEEEEESCCCH----HHHHHHHHH--------------SCSCEEECC---------------------------------
T ss_pred EEEEEEecCCH----HHHHHHHHh--------------CCCCeEEEc---------------------------------
Confidence 67899999731 111111111 000000000
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
... ....+......+.+..
T Consensus 208 ~~~--~~~~~~~~~~~~~~~~----------------------------------------------------------- 226 (395)
T 3pey_A 208 QTN--EVNVDAIKQLYMDCKN----------------------------------------------------------- 226 (395)
T ss_dssp CGG--GCSCTTEEEEEEECSS-----------------------------------------------------------
T ss_pred ccc--ccccccccEEEEEcCc-----------------------------------------------------------
Confidence 000 0001111111111100
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
...|+..|..++... .+.++||||+....++.+..+|...++.+..+||+++.++|.++++.|+
T Consensus 227 --------------~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 290 (395)
T 3pey_A 227 --------------EADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR 290 (395)
T ss_dssp --------------HHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred --------------hHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 011333333333322 4679999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCC------CcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW------NP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
++... +|++|+++++|||++++++||+||+|| |+..+.|++||++|.|++..+.++..
T Consensus 291 ~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 354 (395)
T 3pey_A 291 EGRSK---VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVH 354 (395)
T ss_dssp TTSCC---EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred CCCCC---EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEe
Confidence 75444 799999999999999999999999999 99999999999999998877766654
No 22
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=3.7e-29 Score=307.44 Aligned_cols=312 Identities=18% Similarity=0.214 Sum_probs=221.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-----CCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-----NYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-----~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
+++|+|.+++.+++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |+.||..++.+++
T Consensus 78 ~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 699999999998875 778999999999999998887766554332 245789999986 8899999999998
Q ss_pred C--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhcc
Q 000101 1074 P--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY 1147 (2239)
Q Consensus 1074 P--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~L 1147 (2239)
. .+.+.+++|+.....+.. ......+|+|+|++.+..... .+...++++|||||||++.+. ...+.+.+..+
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~--~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~ 231 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNE--CITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV 231 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHH--HHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCT
T ss_pred ccCCcEEEEEECCCCHHHHHH--HhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhc
Confidence 5 456666666654433321 223478999999999976532 334457899999999999764 33444555443
Q ss_pred ---ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000101 1148 ---RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1224 (2239)
Q Consensus 1148 ---ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLr 1224 (2239)
.....+++|||+- .++..+.... +..+....
T Consensus 232 ~~~~~~q~l~~SAT~~----~~~~~~~~~~--------------l~~~~~i~---------------------------- 265 (434)
T 2db3_A 232 TMRPEHQTLMFSATFP----EEIQRMAGEF--------------LKNYVFVA---------------------------- 265 (434)
T ss_dssp TSCSSCEEEEEESCCC----HHHHHHHHTT--------------CSSCEEEE----------------------------
T ss_pred CCCCCceEEEEeccCC----HHHHHHHHHh--------------ccCCEEEE----------------------------
Confidence 3456888999962 1121111100 00000000
Q ss_pred hHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000101 1225 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1304 (2239)
Q Consensus 1225 PFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiC 1304 (2239)
...+..........++.|
T Consensus 266 -------~~~~~~~~~~i~~~~~~~------------------------------------------------------- 283 (434)
T 2db3_A 266 -------IGIVGGACSDVKQTIYEV------------------------------------------------------- 283 (434)
T ss_dssp -------ESSTTCCCTTEEEEEEEC-------------------------------------------------------
T ss_pred -------eccccccccccceEEEEe-------------------------------------------------------
Confidence 000000000001111111
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000101 1305 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1305 nHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqe 1384 (2239)
....|...|..+|.. .+.++||||+....++.|.++|...|+.+..+||+++..+|..
T Consensus 284 -------------------~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 341 (434)
T 2db3_A 284 -------------------NKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQ 341 (434)
T ss_dssp -------------------CGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 011244445444443 3456999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1385 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1385 iL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+++.|+++... +|++|+++++|||++++++||+||+||++..|.||+||++|.|++..+.+|+
T Consensus 342 ~l~~F~~g~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 342 ALRDFKNGSMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp HHHHHHTSSCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred HHHHHHcCCCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEE
Confidence 99999975444 7999999999999999999999999999999999999999999887766654
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=2e-29 Score=293.41 Aligned_cols=298 Identities=17% Similarity=0.190 Sum_probs=208.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--V 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs--l 1076 (2239)
+|+|||.+++.+++. +.++|++++||+|||++++.++... ..++|||||.. |+.||..++.+|.+. +
T Consensus 16 ~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 699999999999885 6789999999999999887766542 45799999975 889999999999754 5
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhhccccc-e
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRCQ-R 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~Lka~-r 1151 (2239)
.+..+.|......... .....+|+|+||+.+..... .+...+|++|||||||++.+.. ..+...+..+... .
T Consensus 86 ~~~~~~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~ 162 (337)
T 2z0m_A 86 KVAEVYGGMPYKAQIN---RVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKI 162 (337)
T ss_dssp CEEEECTTSCHHHHHH---HHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSE
T ss_pred cEEEEECCcchHHHHh---hcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccE
Confidence 6666777654433221 12358999999999986532 3344578999999999986533 3334444445444 4
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.+++||||-.. +..+ +..++..+.... .
T Consensus 163 ~~~~SAT~~~~----~~~~--------------~~~~~~~~~~~~----------------------------~------ 190 (337)
T 2z0m_A 163 TGLFSATIPEE----IRKV--------------VKDFITNYEEIE----------------------------A------ 190 (337)
T ss_dssp EEEEESCCCHH----HHHH--------------HHHHSCSCEEEE----------------------------C------
T ss_pred EEEEeCcCCHH----HHHH--------------HHHhcCCceeee----------------------------c------
Confidence 56789998321 1111 111111100000 0
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
...++......+.+... .
T Consensus 191 ----~~~~~~~~~~~~~~~~~--~-------------------------------------------------------- 208 (337)
T 2z0m_A 191 ----CIGLANVEHKFVHVKDD--W-------------------------------------------------------- 208 (337)
T ss_dssp ----SGGGGGEEEEEEECSSS--S--------------------------------------------------------
T ss_pred ----ccccCCceEEEEEeChH--H--------------------------------------------------------
Confidence 00000001111111000 0
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
+ .....+. ...+.++||||+....++.+...|. .+..+||+++..+|.++++.|++
T Consensus 209 ----------------~--~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~ 264 (337)
T 2z0m_A 209 ----------------R--SKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFRE 264 (337)
T ss_dssp ----------------H--HHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHT
T ss_pred ----------------H--HHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHc
Confidence 0 0001111 1357899999999999999998886 57889999999999999999997
Q ss_pred CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1392 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1392 ~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
+... +|++|+++++|||++++++||+||+|||+..+.|++||++|.|+...|.+|..
T Consensus 265 ~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 265 GEYD---MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp TSCS---EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred CCCc---EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 5444 79999999999999999999999999999999999999999999888877765
No 24
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.97 E-value=3.4e-30 Score=305.50 Aligned_cols=202 Identities=17% Similarity=0.206 Sum_probs=152.5
Q ss_pred CCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc-c--
Q 000101 1239 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF-S-- 1315 (2239)
Q Consensus 1239 LP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~-~-- 1315 (2239)
.|++.+++++|.||+.|+.+|+.+.......+ .................+.+.+|+||+|||||+|+...+ .
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I-----~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~ 94 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDI-----LRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKS 94 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHH-----HHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSC
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHH-----HHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCcc
Confidence 48999999999999999999999865321111 111111110112335688999999999999999985322 1
Q ss_pred ---ccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcC
Q 000101 1316 ---DLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1392 (2239)
Q Consensus 1316 ---~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ 1392 (2239)
....+.+++.||||.+|+++|..+.+.|||||||||++.++|+|++||..+|+.|+|+||++... +.+ ..
T Consensus 95 ~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k------~~ 167 (328)
T 3hgt_A 95 LITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAA------AN 167 (328)
T ss_dssp SCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------
T ss_pred ccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhh------cc
Confidence 11245678899999999999999999999999999999999999999999999999999996543 222 12
Q ss_pred CCCccEEEEeccccccccC-----CCcCceEEEcCCCCCcchH-HHhhhhhccc--CCcceEEEEEEeh
Q 000101 1393 DSDCFIFLLSIRAAGRGLN-----LQSADTVIIYDPDPNPKNE-EQAVARAHRI--GQKREVKVIYMEA 1453 (2239)
Q Consensus 1393 ds~~~VfLLSTrAGGeGLN-----LqaADtVIifDppWNP~~d-lQAiGRAhRI--GQkKeV~VyrLva 1453 (2239)
++.+++||+ |.+||.|+| |..||+||+||++|||+.+ +||+.|+||+ ||++.|.||||++
T Consensus 168 ~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt 235 (328)
T 3hgt_A 168 DFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVA 235 (328)
T ss_dssp CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEE
T ss_pred cCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeC
Confidence 467888888 568888886 8999999999999999998 9999999999 7899999999987
No 25
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=8.5e-29 Score=297.84 Aligned_cols=314 Identities=22% Similarity=0.263 Sum_probs=217.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC------------------CCCeEEEechH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN------------------YGPHLIIVPNA 1060 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~------------------~GP~LIVVP~S 1060 (2239)
.+|+|+|.+++..++. +.+.|++.+||+|||++++..+...+...+. ...+|||||+.
T Consensus 36 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 3799999999987765 7789999999999999887766554432221 24689999985
Q ss_pred -HHHHHHHHHHHHCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC
Q 000101 1061 -VLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1061 -LLsQW~~Ef~KwaP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN 1135 (2239)
|+.||.+++.+|+. .+.+..+.|+........ ......+|+|+|++.+..... .+....+++|||||||++..
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~ 189 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR--DLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 189 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH--HHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH--HhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhc
Confidence 88999999999874 467777777655443322 123468999999999986532 34445789999999999854
Q ss_pred h--hhHHHHHhhc--cc---cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000101 1136 R--ESVLARDLDR--YR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1208 (2239)
Q Consensus 1136 ~--~SKlskaLk~--Lk---a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~ 1208 (2239)
. ...+...+.. +. ....++||||+-. ++..++. .++..+......
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~~---------- 241 (417)
T 2i4i_A 190 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLAR--------------DFLDEYIFLAVG---------- 241 (417)
T ss_dssp TTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHH--------------HHCSSCEEEEEC----------
T ss_pred cCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHH--------------HHcCCCEEEEeC----------
Confidence 3 2333344432 22 3457899999721 1111111 111111000000
Q ss_pred HHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCc-eEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHH
Q 000101 1209 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK-VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1287 (2239)
Q Consensus 1209 ~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K-~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~ 1287 (2239)
.. ...++. ...++++.
T Consensus 242 -------------------------~~-~~~~~~i~~~~~~~~------------------------------------- 258 (417)
T 2i4i_A 242 -------------------------RV-GSTSENITQKVVWVE------------------------------------- 258 (417)
T ss_dssp ------------------------------CCSSEEEEEEECC-------------------------------------
T ss_pred -------------------------CC-CCCccCceEEEEEec-------------------------------------
Confidence 00 000111 11111111
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC
Q 000101 1288 KVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1367 (2239)
Q Consensus 1288 k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG 1367 (2239)
...|...|..++... ..+.++||||+....++.+.++|...|
T Consensus 259 -------------------------------------~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~ 300 (417)
T 2i4i_A 259 -------------------------------------ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEG 300 (417)
T ss_dssp -------------------------------------GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred -------------------------------------cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCC
Confidence 112444444444432 347799999999999999999999999
Q ss_pred CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEE
Q 000101 1368 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1447 (2239)
Q Consensus 1368 iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~ 1447 (2239)
+.+..+||+++.++|.++++.|+++... +|++|+++++|||++++++||+||+||++..|.|++||++|.|+...+.
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 377 (417)
T 2i4i_A 301 YACTSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 377 (417)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEE
T ss_pred CCeeEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEE
Confidence 9999999999999999999999975544 7999999999999999999999999999999999999999999876665
Q ss_pred EEE
Q 000101 1448 VIY 1450 (2239)
Q Consensus 1448 Vyr 1450 (2239)
+++
T Consensus 378 ~~~ 380 (417)
T 2i4i_A 378 SFF 380 (417)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=1.5e-30 Score=309.72 Aligned_cols=314 Identities=15% Similarity=0.173 Sum_probs=117.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--s 1075 (2239)
.+|+|||.+++.+++. +.++|++++||+|||++++..+...+......+++|||||.. |+.||..++.+++. +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 3799999999999987 678999999999999998777665544334556899999975 88999999999985 4
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhccc-cc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~ 1150 (2239)
+.+..+.|......... .+ ...+|+|+||+.+..... .+...+|++|||||||++.+ ....+...+..+. ..
T Consensus 118 ~~~~~~~g~~~~~~~~~-~~--~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAE-GL--RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 194 (394)
T ss_dssp CCEEEECSSCCHHHHHH-HH--HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eeEEEEeCCCchHHHHh-hc--CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCc
Confidence 66777777655433221 11 267899999999876532 34455799999999999843 3334444444553 45
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
++++|||||-. ++..++ ..++..|+...
T Consensus 195 ~~i~~SAT~~~----~~~~~~--------------~~~~~~~~~~~---------------------------------- 222 (394)
T 1fuu_A 195 QVVLLSATMPN----DVLEVT--------------TKFMRNPVRIL---------------------------------- 222 (394)
T ss_dssp EEEEECSSCCH----HHHHHH--------------HHHCCSCEEEE----------------------------------
T ss_pred eEEEEEEecCH----HHHHHH--------------HHhcCCCeEEE----------------------------------
Confidence 68999999832 111111 11111111000
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
+.-.... ...+.. .. ..+
T Consensus 223 ------------------~~~~~~~---~~~~~~-------------------------------~~----~~~------ 240 (394)
T 1fuu_A 223 ------------------VKKDELT---LEGIKQ-------------------------------FY----VNV------ 240 (394)
T ss_dssp ------------------ECC-----------------------------------------------------------
T ss_pred ------------------ecCcccc---CCCceE-------------------------------EE----EEc------
Confidence 0000000 000000 00 000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
.....|...|..++... .+.++||||+....++.+.+.|...++.+..+||+++.++|..+++.|+
T Consensus 241 ------------~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 306 (394)
T 1fuu_A 241 ------------EEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 306 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------CchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHH
Confidence 00001333344444432 3568999999999999999999999999999999999999999999998
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++... +|++|+++++|||++++++||+||++|++..+.|++||++|.|++..|.++.
T Consensus 307 ~~~~~---vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 307 SGSSR---ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred CCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEE
Confidence 64433 7899999999999999999999999999999999999999999887766554
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=3e-28 Score=291.70 Aligned_cols=314 Identities=17% Similarity=0.186 Sum_probs=217.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---P 1074 (2239)
.+++|||.+++..++.. .+.+.|++.+||+|||++++..+...+......+.+|||||+. |+.||...+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 37999999999888762 3478899999999999998777765554344455899999977 7888988888775 5
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh---hhcccCCceEEEecccccccC---hhhHHHHHhhccc
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKD---RESVLARDLDRYR 1148 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrIKN---~~SKlskaLk~Lk 1148 (2239)
.+.+.+..+...... ......+|+|+|++.+.... ..+...+|++|||||||++.. ........+..+.
T Consensus 124 ~~~~~~~~~~~~~~~-----~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 198 (412)
T 3fht_A 124 ELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 198 (412)
T ss_dssp TCCEEEECTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC
T ss_pred cceEEEeecCcchhh-----hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC
Confidence 667776666543221 12345789999999997754 234445799999999999853 2223333333343
Q ss_pred -cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1149 -CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1149 -a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
....++|||||-. +++.++..+ +..+..... .
T Consensus 199 ~~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~-----~------------------------ 231 (412)
T 3fht_A 199 RNCQMLLFSATFED----SVWKFAQKV--------------VPDPNVIKL-----K------------------------ 231 (412)
T ss_dssp TTCEEEEEESCCCH----HHHHHHHHH--------------SSSCEEECC-----C------------------------
T ss_pred CCceEEEEEeecCH----HHHHHHHHh--------------cCCCeEEee-----c------------------------
Confidence 3467889999732 222211111 111000000 0
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
.....++......+.+..
T Consensus 232 ------~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 249 (412)
T 3fht_A 232 ------REEETLDTIKQYYVLCSS-------------------------------------------------------- 249 (412)
T ss_dssp ------GGGSSCTTEEEEEEECSS--------------------------------------------------------
T ss_pred ------cccccccCceEEEEEcCC--------------------------------------------------------
Confidence 000001111111111110
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~ 1387 (2239)
...|+..|..++... .+.++||||+....++.+..+|...++.+..+||+++.++|..+++
T Consensus 250 -----------------~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 310 (412)
T 3fht_A 250 -----------------RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 310 (412)
T ss_dssp -----------------HHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHH
Confidence 011344444444432 4679999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCc------chHHHhhhhhcccCCcceEEEEE
Q 000101 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1388 ~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP------~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.|+++... +|++|+++++|||++++++||+||+||++ ..|.|++||++|.|+...+.++.
T Consensus 311 ~f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 376 (412)
T 3fht_A 311 RFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 376 (412)
T ss_dssp HHHTTSCS---EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred HHHCCCCc---EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEE
Confidence 99975444 79999999999999999999999999987 59999999999999876665554
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=2.1e-27 Score=287.88 Aligned_cols=303 Identities=17% Similarity=0.217 Sum_probs=213.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SV 1076 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-sl 1076 (2239)
.+++|||.+++..++. +.+.|++.+||+|||+.++..+..+. ...+.+|||||+. |+.||..+|.+|++ ++
T Consensus 20 ~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 3689999999998875 66889999999999996666655443 4456899999976 88999999999986 77
Q ss_pred ceEEEecchhh--HHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccC-------------hhhH-H
Q 000101 1077 SCIYYVGAKDQ--RSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-------------RESV-L 1140 (2239)
Q Consensus 1077 kvvvy~Gskd~--Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN-------------~~SK-l 1140 (2239)
.+..++|.... +......+..+.++|+|+|++.+......+...++++|||||||++.. .... +
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~ 172 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEII 172 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHH
T ss_pred eEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHH
Confidence 88888887544 233334455556999999999998776666667899999999998732 2222 3
Q ss_pred HHHhhcc------------ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000101 1141 ARDLDRY------------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1208 (2239)
Q Consensus 1141 skaLk~L------------ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~ 1208 (2239)
...+..+ .....+++||||....+...+ +...+.... .
T Consensus 173 ~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------~~~~~~~~~--~------------ 222 (414)
T 3oiy_A 173 RKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTV--G------------ 222 (414)
T ss_dssp HHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH----------------HHHHHSCCS--S------------
T ss_pred HHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH----------------HHHhhccCc--C------------
Confidence 3333333 344678899996554422111 000000000 0
Q ss_pred HHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHH
Q 000101 1209 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1288 (2239)
Q Consensus 1209 ~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k 1288 (2239)
. ....+......+.
T Consensus 223 -------------------------~-~~~~~~~i~~~~~---------------------------------------- 236 (414)
T 3oiy_A 223 -------------------------R-LVSVARNITHVRI---------------------------------------- 236 (414)
T ss_dssp -------------------------C-CCCCCCSEEEEEE----------------------------------------
T ss_pred -------------------------c-cccccccchheee----------------------------------------
Confidence 0 0000111111100
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCC
Q 000101 1289 VYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1368 (2239)
Q Consensus 1289 ~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGi 1368 (2239)
...|...|..+|.. .+.++||||+....++.|..+|...|+
T Consensus 237 ------------------------------------~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~ 277 (414)
T 3oiy_A 237 ------------------------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKF 277 (414)
T ss_dssp ------------------------------------SSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred ------------------------------------ccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 01233444455544 358999999999999999999999999
Q ss_pred eEE-eecCCCCHHHHHHHHHHHhcCCCCccEEEEe----ccccccccCCCc-CceEEEcCCC--CCcchHHHhhhhhccc
Q 000101 1369 VYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPD--PNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1369 ky~-RLDGsts~eeRqeiL~~FNs~ds~~~VfLLS----TrAGGeGLNLqa-ADtVIifDpp--WNP~~dlQAiGRAhRI 1440 (2239)
.+. .+||. +|. ++.|+++.. . +|++ |+++++|||+++ +++||+||+| +++..|.|++||++|.
T Consensus 278 ~~~~~~h~~----~r~--~~~f~~g~~--~-vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 278 NVGETWSEF----EKN--FEDFKVGKI--N-ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp CEEESSSCH----HHH--HHHHHTTSC--S-EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCE
T ss_pred ceehhhcCc----chH--HHHHhCCCC--e-EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccC
Confidence 998 99994 444 999997544 4 5666 999999999999 9999999999 9999999999999999
Q ss_pred CCc--ceEEEEEEe
Q 000101 1441 GQK--REVKVIYME 1452 (2239)
Q Consensus 1441 GQk--KeV~VyrLv 1452 (2239)
|.. +...++.++
T Consensus 349 g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 349 LNGVLVKGVSVIFE 362 (414)
T ss_dssp ETTEECCEEEEEEC
T ss_pred CCCCCcceEEEEEE
Confidence 974 344444443
No 29
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.95 E-value=8.4e-27 Score=296.09 Aligned_cols=324 Identities=17% Similarity=0.223 Sum_probs=217.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHHHHC-
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELHKWL- 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~----~~GP~LIVVP~S-LLsQW~~Ef~Kwa- 1073 (2239)
+|+|||.+++..++. ..+.+.|+...||+|||++++.++...+.... ....+|||||+. |+.||..+|.+++
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 699999999988873 13567799999999999998887776654432 234789999976 8899999999875
Q ss_pred -----CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccChh--hHHHHH
Q 000101 1074 -----PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLARD 1143 (2239)
Q Consensus 1074 -----Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN~~--SKlska 1143 (2239)
+.+.+....|....... ...+....++|+|+|++.+...... .....+++|||||||++.+.. ..+...
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~-~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i 199 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAA-MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETI 199 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHH-HHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred hcccccceEEEEEECCccHHHH-HHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHH
Confidence 44566666666544333 3334445789999999999765432 233468999999999986543 222222
Q ss_pred hhcc---c-----cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000101 1144 LDRY---R-----CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1215 (2239)
Q Consensus 1144 Lk~L---k-----a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~li 1215 (2239)
+..+ . ....++||||+-. .+.+ ++..+. ..+...
T Consensus 200 ~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~---~~~~~l--------------~~~~~~-------------------- 241 (579)
T 3sqw_A 200 SGILNEKNSKSADNIKTLLFSATLDD-KVQK---LANNIM--------------NKKECL-------------------- 241 (579)
T ss_dssp HHHHHHHCSSCTTCCEEEEEESSCCT-HHHH---HTTTTC--------------CSSEEE--------------------
T ss_pred HHHhhhhhcccccCceEEEEeccCCh-HHHH---HHHHHc--------------CCCceE--------------------
Confidence 2222 1 3368999999631 1111 111000 000000
Q ss_pred HHHHHHhhhhHHhhHhHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHH
Q 000101 1216 IHRLHQILEPFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 1294 (2239)
Q Consensus 1216 i~RLhklLrPFmLRRlKkDVekdLP~K~e-~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~ 1294 (2239)
.+... ............ .++.+.-.
T Consensus 242 -----------~~~~~-~~~~~~~~~~i~~~~~~~~~~------------------------------------------ 267 (579)
T 3sqw_A 242 -----------FLDTV-DKNEPEAHERIDQSVVISEKF------------------------------------------ 267 (579)
T ss_dssp -----------EEESS-CSSSCSSCTTEEEEEEEESST------------------------------------------
T ss_pred -----------EEeec-CccccccccccceEEEEecch------------------------------------------
Confidence 00000 000000000111 11111000
Q ss_pred HHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHc---CCe
Q 000101 1295 NRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR---QLV 1369 (2239)
Q Consensus 1295 niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~r---Gik 1369 (2239)
...+...+..++..+. ..+.++||||.....++.+...|... ++.
T Consensus 268 ------------------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~ 317 (579)
T 3sqw_A 268 ------------------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP 317 (579)
T ss_dssp ------------------------------THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSC
T ss_pred ------------------------------hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCc
Confidence 0001222222232222 35789999999999999999999887 999
Q ss_pred EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1370 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1370 y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
+..+||+++..+|..+++.|+.+... |||+|+++++|||++++++||+||+||++..|+|++||++|.|+...+.++
T Consensus 318 v~~~hg~~~~~~R~~~~~~F~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 394 (579)
T 3sqw_A 318 ILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 394 (579)
T ss_dssp EEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred EEEecCCCCHHHHHHHHHHhhcCCCe---EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEE
Confidence 99999999999999999999975433 799999999999999999999999999999999999999999987776665
Q ss_pred EE
Q 000101 1450 YM 1451 (2239)
Q Consensus 1450 rL 1451 (2239)
..
T Consensus 395 ~~ 396 (579)
T 3sqw_A 395 IC 396 (579)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 30
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=1.7e-27 Score=300.20 Aligned_cols=305 Identities=17% Similarity=0.167 Sum_probs=222.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
..++|||.+++..++. +.++|+..+||+|||+.++..+.. ..+.+|||+|+. |+.+|...+.++ ++.
T Consensus 24 ~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~------~~g~~lvi~P~~aL~~q~~~~l~~~--gi~ 91 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL------LNGLTVVVSPLISLMKDQVDQLQAN--GVA 91 (523)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH------SSSEEEEECSCHHHHHHHHHHHHHT--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHH------hCCCEEEECChHHHHHHHHHHHHHc--CCc
Confidence 3799999999999886 678999999999999877655431 136789999975 888999999986 456
Q ss_pred eEEEecchh--hHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccChhh---HHHH----Hhhc
Q 000101 1078 CIYYVGAKD--QRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES---VLAR----DLDR 1146 (2239)
Q Consensus 1078 vvvy~Gskd--~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~~S---Klsk----aLk~ 1146 (2239)
+.++.+... .+......+..+.++|+++|++.+... ...+...++.+|||||||.+...+. ..+. .+..
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~ 171 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh
Confidence 666666543 333344456667899999999999643 2345567899999999999965331 1222 2334
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
+....+++|||||......++...+.+-.|.++.. .+
T Consensus 172 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------~~--------------------------------- 208 (523)
T 1oyw_A 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------SF--------------------------------- 208 (523)
T ss_dssp CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC----------CC---------------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC----------CC---------------------------------
Confidence 45567899999996555555554444322211100 00
Q ss_pred HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000101 1227 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1306 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnH 1306 (2239)
..|.....++.
T Consensus 209 -----------~r~~l~~~v~~---------------------------------------------------------- 219 (523)
T 1oyw_A 209 -----------DRPNIRYMLME---------------------------------------------------------- 219 (523)
T ss_dssp -----------CCTTEEEEEEE----------------------------------------------------------
T ss_pred -----------CCCceEEEEEe----------------------------------------------------------
Confidence 00100000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000101 1307 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1307 P~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL 1386 (2239)
...++..|..+|.. ..+.++||||..+..++.+..+|...|+.+..+||+++.++|..++
T Consensus 220 ------------------~~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 220 ------------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp ------------------CSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ------------------CCCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 01122333333332 2577999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+.|..++.. +|++|.++|+|||++++++||+||+|||+..|.|++||++|.|+...+.+++
T Consensus 280 ~~f~~g~~~---vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 280 EKFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp HHHHTTSCS---EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred HHHHcCCCe---EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEe
Confidence 999975544 7999999999999999999999999999999999999999999887776654
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=1.7e-26 Score=290.77 Aligned_cols=324 Identities=18% Similarity=0.223 Sum_probs=215.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC----CCCeEEEechH-HHHHHHHHHHHHC-
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN----YGPHLIIVPNA-VLVNWKSELHKWL- 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~----~GP~LIVVP~S-LLsQW~~Ef~Kwa- 1073 (2239)
+|+|||.+++..++. ..+.+.|++.+||+|||++++..+...+..... ...+|||||+. |+.||..+|.+++
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 699999999988873 135678999999999999988877766543321 24789999976 8889999999864
Q ss_pred -----CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccChh--hHHHHH
Q 000101 1074 -----PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLARD 1143 (2239)
Q Consensus 1074 -----Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN~~--SKlska 1143 (2239)
+.+.+..+.|....... ...+.....+|+|+|++.+...... .....+++|||||||++.... ..+...
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i 250 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAA-MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETI 250 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHH-HHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred hccccCceeEEEEECCcCHHHH-HHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHH
Confidence 34556666666544333 2334455789999999999765332 223458999999999986542 222222
Q ss_pred hhcc---c-----cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000101 1144 LDRY---R-----CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1215 (2239)
Q Consensus 1144 Lk~L---k-----a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~li 1215 (2239)
+..+ . ....++||||+-. .+. .++..+.. .+...
T Consensus 251 ~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~---~~~~~~~~--------------~~~~~-------------------- 292 (563)
T 3i5x_A 251 SGILNEKNSKSADNIKTLLFSATLDD-KVQ---KLANNIMN--------------KKECL-------------------- 292 (563)
T ss_dssp HHHHHHHCSSCTTCCEEEEEESSCCT-HHH---HHTTTTCC--------------SSEEE--------------------
T ss_pred HHhhhhccccCccCceEEEEEccCCH-HHH---HHHHHhcC--------------CCceE--------------------
Confidence 2222 1 3358999999732 111 11111000 00000
Q ss_pred HHHHHHhhhhHHhhHhHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHH
Q 000101 1216 IHRLHQILEPFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 1294 (2239)
Q Consensus 1216 i~RLhklLrPFmLRRlKkDVekdLP~K~e-~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~ 1294 (2239)
.+.. ............. .++.+... .
T Consensus 293 -----------~~~~-~~~~~~~~~~~~~~~~~~~~~~--~--------------------------------------- 319 (563)
T 3i5x_A 293 -----------FLDT-VDKNEPEAHERIDQSVVISEKF--A--------------------------------------- 319 (563)
T ss_dssp -----------EEES-SCSSSCSSCTTEEEEEEEESST--T---------------------------------------
T ss_pred -----------EEec-cCCCCccccccCceEEEECchh--H---------------------------------------
Confidence 0000 0000000000111 11111000 0
Q ss_pred HHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHc---CCe
Q 000101 1295 NRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR---QLV 1369 (2239)
Q Consensus 1295 niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~r---Gik 1369 (2239)
......+..++..+. ..+.++||||.....++.+..+|... ++.
T Consensus 320 -------------------------------~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~ 368 (563)
T 3i5x_A 320 -------------------------------NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP 368 (563)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred -------------------------------hhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCce
Confidence 001111222222222 45789999999999999999999887 999
Q ss_pred EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1370 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1370 y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
+..+||+++..+|..+++.|+.+... |||+|+++++|||++++++||+||+|+++..|+|++||++|.|+...+.++
T Consensus 369 v~~~h~~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 445 (563)
T 3i5x_A 369 ILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 445 (563)
T ss_dssp EEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCC---EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEE
Confidence 99999999999999999999975443 799999999999999999999999999999999999999999987766665
Q ss_pred EE
Q 000101 1450 YM 1451 (2239)
Q Consensus 1450 rL 1451 (2239)
..
T Consensus 446 ~~ 447 (563)
T 3i5x_A 446 IC 447 (563)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=1.7e-26 Score=295.18 Aligned_cols=308 Identities=15% Similarity=0.123 Sum_probs=216.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
..++|||.+++..++. +.++|+..+||+|||++++..+.. ..+.+|||+|+. |+.||...|.++ ++.
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 3799999999999886 678999999999999877655532 246899999975 889999999998 667
Q ss_pred eEEEecchhh--HHHHHHHH--hhcCccEEEEehhHHHHh---hh----hcccCCceEEEecccccccChh-------hH
Q 000101 1078 CIYYVGAKDQ--RSRLFSQV--AALKFNVLVTTYEFIMYD---RS----KLSKVDWKYIIIDEAQRMKDRE-------SV 1139 (2239)
Q Consensus 1078 vvvy~Gskd~--Rk~l~~~i--~~~kfdVVITTYE~L~kD---~s----~L~kikWd~VIIDEAHrIKN~~-------SK 1139 (2239)
+.++.|.... +......+ ....++|+|+|++.+... .. .+...++.+|||||||.+.... ..
T Consensus 111 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~ 190 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKA 190 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGG
T ss_pred EEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHH
Confidence 7777665432 22333333 356889999999988531 22 2233478999999999986432 12
Q ss_pred HHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000101 1140 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1219 (2239)
Q Consensus 1140 lskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RL 1219 (2239)
+......+....+++|||||-.....++...|.+-.+..+.. .
T Consensus 191 l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~----------~--------------------------- 233 (591)
T 2v1x_A 191 LGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA----------S--------------------------- 233 (591)
T ss_dssp GGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC----------C---------------------------
T ss_pred HHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec----------C---------------------------
Confidence 222223445667899999985433333333222111100000 0
Q ss_pred HHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000101 1220 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1299 (2239)
Q Consensus 1220 hklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImq 1299 (2239)
...|.....+....
T Consensus 234 -----------------~~r~nl~~~v~~~~------------------------------------------------- 247 (591)
T 2v1x_A 234 -----------------FNRPNLYYEVRQKP------------------------------------------------- 247 (591)
T ss_dssp -----------------CCCTTEEEEEEECC-------------------------------------------------
T ss_pred -----------------CCCcccEEEEEeCC-------------------------------------------------
Confidence 00011111111000
Q ss_pred HHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCC
Q 000101 1300 LRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1377 (2239)
Q Consensus 1300 LRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGst 1377 (2239)
..+...+..++..+. ..+.++||||..+..++.|..+|...|+.+..+||++
T Consensus 248 --------------------------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l 301 (591)
T 2v1x_A 248 --------------------------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANL 301 (591)
T ss_dssp --------------------------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred --------------------------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 001111222222222 1478999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1378 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1378 s~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+.++|..+++.|..++.. ||++|.++|+|||++++++||+||+|+++..|.|++||++|.|+...+.+++
T Consensus 302 ~~~~R~~~~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~ 371 (591)
T 2v1x_A 302 EPEDKTTVHRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYY 371 (591)
T ss_dssp CHHHHHHHHHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEE
Confidence 999999999999975544 7999999999999999999999999999999999999999999887776664
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=5.1e-26 Score=309.15 Aligned_cols=305 Identities=17% Similarity=0.201 Sum_probs=220.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs 1075 (2239)
.+++|||.+++.+++.....+. ++|++++||+|||++++..+..... ....+|||||+. |+.||..+|.++++.
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 4789999999999998766555 7899999999999998765544432 335899999987 788999999999875
Q ss_pred --CceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcccc-c
Q 000101 1076 --VSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC-Q 1150 (2239)
Q Consensus 1076 --lkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka-~ 1150 (2239)
+.+.++.|. ...+......+..+..+|+|+|++.+.++ +...+|++|||||+|++. ......+..+.. .
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g---~~~~~~l~~l~~~~ 752 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFG---VRHKERIKAMRANV 752 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSC---HHHHHHHHHHHTTS
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC---ccccccceEEEechHhcC---hHHHHHHHHhcCCC
Confidence 456666653 33445555556677899999999988543 334578999999999974 334455555544 4
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
++|+|||||+.+.+...+. .+..+.+
T Consensus 753 ~vl~lSATp~p~~l~~~~~--~~~~~~~---------------------------------------------------- 778 (1151)
T 2eyq_A 753 DILTLTATPIPRTLNMAMS--GMRDLSI---------------------------------------------------- 778 (1151)
T ss_dssp EEEEEESSCCCHHHHHHHT--TTSEEEE----------------------------------------------------
T ss_pred CEEEEcCCCChhhHHHHHh--cCCCceE----------------------------------------------------
Confidence 6899999997654321110 0000000
Q ss_pred hHhhhhcCCCCce--EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1231 RVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1231 lKkDVekdLP~K~--e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
....|... .......
T Consensus 779 -----i~~~~~~r~~i~~~~~~---------------------------------------------------------- 795 (1151)
T 2eyq_A 779 -----IATPPARRLAVKTFVRE---------------------------------------------------------- 795 (1151)
T ss_dssp -----CCCCCCBCBCEEEEEEE----------------------------------------------------------
T ss_pred -----EecCCCCccccEEEEec----------------------------------------------------------
Confidence 00000000 0000000
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHH
Q 000101 1309 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1309 L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--Giky~RLDGsts~eeRqeiL 1386 (2239)
..+..++..++..+ ..+.+|||||+.+..++.+.+.|... ++.+..+||.++..+|.+++
T Consensus 796 -----------------~~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il 857 (1151)
T 2eyq_A 796 -----------------YDSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 857 (1151)
T ss_dssp -----------------CCHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHH
T ss_pred -----------------CCHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH
Confidence 00112222333333 35789999999999999999999887 88999999999999999999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCC-CCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP-DPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDp-pWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++|+++..+ |||+|+++++|||++++++||++++ .|++..+.|++||++|.|+...|.+++
T Consensus 858 ~~F~~g~~~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~ 919 (1151)
T 2eyq_A 858 NDFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 919 (1151)
T ss_dssp HHHHTTSCC---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred HHHHcCCCc---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEE
Confidence 999975444 7999999999999999999999999 599999999999999999776665543
No 34
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.94 E-value=7.3e-27 Score=288.93 Aligned_cols=314 Identities=18% Similarity=0.218 Sum_probs=110.9
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHH---CC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKW---LP 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kw---aP 1074 (2239)
..++|+|..++..++. ..+.+.|++.+||+|||++++..+...+........+|||||+. |+.||...+.++ ++
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3799999999998875 23467899999999999998777665543333444799999987 778887766655 46
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh---hcccCCceEEEecccccccC---hhhHHHHHhhccc
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKD---RESVLARDLDRYR 1148 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrIKN---~~SKlskaLk~Lk 1148 (2239)
.+.+.+..+...... ......+|+|+|++.+..... .+...++.+|||||||++.. ........+..+.
T Consensus 191 ~~~~~~~~~~~~~~~-----~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~ 265 (479)
T 3fmp_B 191 ELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 265 (479)
T ss_dssp TCCEEEESTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC
T ss_pred CceEEEEeCCccccc-----cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC
Confidence 677777766543211 122356899999999977542 34445789999999999853 2223333333443
Q ss_pred -cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1149 -CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1149 -a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
....+++||||-. +++.+...+.
T Consensus 266 ~~~~~i~~SAT~~~----~~~~~~~~~~---------------------------------------------------- 289 (479)
T 3fmp_B 266 RNCQMLLFSATFED----SVWKFAQKVV---------------------------------------------------- 289 (479)
T ss_dssp TTSEEEEEESCCCH----HHHHHHHHHS----------------------------------------------------
T ss_pred ccceEEEEeCCCCH----HHHHHHHHHc----------------------------------------------------
Confidence 3457889999831 2222211111
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
|......+. ...... ..+ .+.-..|+
T Consensus 290 ------------~~~~~i~~~----~~~~~~-~~~-----------------------------------~~~~~~~~-- 315 (479)
T 3fmp_B 290 ------------PDPNVIKLK----REEETL-DTI-----------------------------------KQYYVLCS-- 315 (479)
T ss_dssp ------------SSEEEEEEC-----------------------------------------------------------
T ss_pred ------------CCCeEEecc----ccccCc-CCc-----------------------------------eEEEEEeC--
Confidence 111100000 000000 000 00000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~ 1387 (2239)
....|+..|..++... .+.++||||+....++.|...|...++.+..+||+++..+|..+++
T Consensus 316 ----------------~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~ 377 (479)
T 3fmp_B 316 ----------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 377 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------CHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHH
Confidence 0011333333333322 3468999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCc------chHHHhhhhhcccCCcceEEEEE
Q 000101 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1388 ~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP------~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.|+++... +||+|+++++|||++++++||+||+||++ ..|.|++||++|.|....+.+++
T Consensus 378 ~f~~g~~~---iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~ 443 (479)
T 3fmp_B 378 RFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHcCCCc---EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 99975544 79999999999999999999999999876 69999999999999776665544
No 35
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1e-26 Score=291.58 Aligned_cols=314 Identities=17% Similarity=0.158 Sum_probs=192.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
++++||.+++..++.. .+.++||+.+||+|||++++..+...+......+.+|||||.. |+.||.++|.+++....+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 5899999999887752 2378899999999999998877776654344456899999977 889999999999865544
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC---hhhHHHHHhhccc-cceE
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD---RESVLARDLDRYR-CQRR 1152 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN---~~SKlskaLk~Lk-a~rR 1152 (2239)
.+..+...... .......+|+|+|++.+.... ..+....|++|||||||++.. ........+..+. ....
T Consensus 219 ~~~~~~~~~~~----~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (508)
T 3fho_A 219 KTAFGIKDSVP----KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI 294 (508)
T ss_dssp CEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEE
T ss_pred eEEEEeCCccc----ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeE
Confidence 33333222111 122347899999999987653 233445799999999999854 2223333334444 3457
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhc-CCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS-QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~-kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
++|||||- +.+.++.. +|. .+....... ..
T Consensus 295 i~lSAT~~-~~~~~~~~------------------~~~~~~~~i~~~~--~~---------------------------- 325 (508)
T 3fho_A 295 VLFSATFS-ERVEKYAE------------------RFAPNANEIRLKT--EE---------------------------- 325 (508)
T ss_dssp EEEESCCS-THHHHHHH------------------HHSTTCEEECCCC--CC----------------------------
T ss_pred EEEeCCCC-HHHHHHHH------------------HhcCCCeEEEecc--cc----------------------------
Confidence 89999973 11222111 110 000000000 00
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
...+......+.+.
T Consensus 326 -----~~~~~~~~~~~~~~------------------------------------------------------------- 339 (508)
T 3fho_A 326 -----LSVEGIKQLYMDCQ------------------------------------------------------------- 339 (508)
T ss_dssp ---------CCCCEEEEC--------------------------------------------------------------
T ss_pred -----CCcccceEEEEECC-------------------------------------------------------------
Confidence 00000000011100
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
....|...|..++... .+.++||||+....++.+...|...++.+..+||+++..+|..+++.|++
T Consensus 340 ------------~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~ 405 (508)
T 3fho_A 340 ------------SEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV 405 (508)
T ss_dssp -------------CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS
T ss_pred ------------chHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 0011333344444332 46799999999999999999999999999999999999999999999997
Q ss_pred CCCCccEEEEeccccccccCCCcCceEEEcCCC------CCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1392 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD------PNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1392 ~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp------WNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
+... +|++|+++++|||++++++||+||++ +++..+.|++||++|.|+...+.++..
T Consensus 406 g~~~---VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~ 468 (508)
T 3fho_A 406 GTSK---VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVH 468 (508)
T ss_dssp SSCC---CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEEC
T ss_pred CCCe---EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEe
Confidence 5544 79999999999999999999999999 789999999999999998777766643
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.92 E-value=2.7e-25 Score=291.24 Aligned_cols=307 Identities=18% Similarity=0.221 Sum_probs=210.0
Q ss_pred CChHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 1000 TLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
+|+++|.+++..+......+ .+.||+.+||+|||++++..+...+.. ...+|||||+. |+.||..+|.+|++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 79999999999998765443 478999999999999998888776642 25799999986 78899999999986
Q ss_pred CCceEEEecchh--hHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhc-cccce
Q 000101 1075 SVSCIYYVGAKD--QRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQR 1151 (2239)
Q Consensus 1075 slkvvvy~Gskd--~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~-Lka~r 1151 (2239)
++.+.+++|... .+......+..+..+|+|+|++.+... +...++++|||||+|++.... ...+.. ....+
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~~~~~ 518 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ---REALMNKGKMVD 518 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSSSSCCC
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH---HHHHHHhCCCCC
Confidence 577888887643 344455556667899999999988543 334578999999999983211 111222 23457
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.|+|||||+...+... .+-...
T Consensus 519 vL~mSATp~p~tl~~~----~~g~~~------------------------------------------------------ 540 (780)
T 1gm5_A 519 TLVMSATPIPRSMALA----FYGDLD------------------------------------------------------ 540 (780)
T ss_dssp EEEEESSCCCHHHHHH----HTCCSS------------------------------------------------------
T ss_pred EEEEeCCCCHHHHHHH----HhCCcc------------------------------------------------------
Confidence 8999999965432211 000000
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
-.+...+|+....+.....
T Consensus 541 -~s~i~~~p~~r~~i~~~~~------------------------------------------------------------ 559 (780)
T 1gm5_A 541 -VTVIDEMPPGRKEVQTMLV------------------------------------------------------------ 559 (780)
T ss_dssp -CEEECCCCSSCCCCEECCC------------------------------------------------------------
T ss_pred -eeeeeccCCCCcceEEEEe------------------------------------------------------------
Confidence 0001112221100000000
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHH--------HHHHHHHHHHH---cCCeEEeecCCCCHH
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQW---RQLVYRRIDGTTSLE 1380 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~--------~LDILed~L~~---rGiky~RLDGsts~e 1380 (2239)
...+...+...+.+....+++++|||.... .++.+.+.|.. .++.+..+||+++.+
T Consensus 560 -------------~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~ 626 (780)
T 1gm5_A 560 -------------PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQE 626 (780)
T ss_dssp -------------CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCS
T ss_pred -------------ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHH
Confidence 000111122233333455778888887543 35667777776 478899999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCC-CcchHHHhhhhhcccCCcceEEEEE
Q 000101 1381 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1381 eRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW-NP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+|..+++.|++++.+ +||+|+++++|||++++++||++|+++ +...+.|++||++|.|+...|.+++
T Consensus 627 eR~~v~~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~ 694 (780)
T 1gm5_A 627 EKDRVMLEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVV 694 (780)
T ss_dssp CSHHHHHHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred HHHHHHHHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEE
Confidence 999999999975544 699999999999999999999999994 7899999999999999887765543
No 37
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.5e-23 Score=281.85 Aligned_cols=347 Identities=17% Similarity=0.099 Sum_probs=215.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
+.+|+|||.+++.++.. +.+.|++.+||+|||+++...+...+. ..+.+|||+|+. |..||..+|.++++
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 35899999999999876 678999999999999998766665553 236899999974 88999999999987
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhccc-cce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lk-a~r 1151 (2239)
.+.++.|.... ....+|+|+|++.+..... .....+|++|||||+|++.+. ...+...+..++ ..+
T Consensus 155 ~vglltGd~~~---------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~ 225 (1010)
T 2xgj_A 155 DVGLMTGDITI---------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 225 (1010)
T ss_dssp CEEEECSSCEE---------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCE
T ss_pred CEEEEeCCCcc---------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCe
Confidence 56667776432 1357899999999875432 223347899999999999764 333444455554 356
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.|+||||+ .| ..+ |.+|+...... +..+
T Consensus 226 il~LSATi-~n-~~e------------------~a~~l~~~~~~-----------------------------~~~v--- 253 (1010)
T 2xgj_A 226 YVFLSATI-PN-AME------------------FAEWICKIHSQ-----------------------------PCHI--- 253 (1010)
T ss_dssp EEEEECCC-TT-HHH------------------HHHHHHHHHTS-----------------------------CEEE---
T ss_pred EEEEcCCC-CC-HHH------------------HHHHHHhhcCC-----------------------------CeEE---
Confidence 78999995 22 223 33333210000 0000
Q ss_pred HhhhhcCCCCceEEEEEecc--------C---HHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000101 1232 VEDVEGSLPPKVSIVLRCRM--------S---AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1300 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~M--------S---~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqL 1300 (2239)
.....-|......++..- . .....-|..........
T Consensus 254 --i~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------------------- 300 (1010)
T 2xgj_A 254 --VYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ------------------------------- 300 (1010)
T ss_dssp --EEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC---------------------------------
T ss_pred --EecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh-------------------------------
Confidence 000001111111111100 0 00000011000000000
Q ss_pred HHHcCCCCCCCCCccccchhhHhhc-cc-HHHHHHHHHHHHHhc-CCeEEEEEccHHHHHHHHHHHHHcCCe--------
Q 000101 1301 RKTCNHPLLNYPYFSDLSKDFLVKS-CG-KLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV-------- 1369 (2239)
Q Consensus 1301 RKiCnHP~L~~p~~~~~s~d~Li~~-SG-KLelLdrIL~kLkat-GhKVLIFSQ~t~~LDILed~L~~rGik-------- 1369 (2239)
....+.-..+ ............ .+ ....+..++..+... +.++||||.....++.+...|...++.
T Consensus 301 --~~~~~~~~~~-~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 301 --IGDDPNSTDS-RGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp -------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred --hccccccccc-ccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 0000000000 000000000000 00 022334444444443 458999999999999999888764442
Q ss_pred -------------------------------EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE
Q 000101 1370 -------------------------------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1370 -------------------------------y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
+..+||+++..+|..+++.|+++... +|++|.++++|||++++++|
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vV 454 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVV 454 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEE
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEE
Confidence 67799999999999999999975544 79999999999999999999
Q ss_pred EE----cCC----CCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1419 II----YDP----DPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1419 Ii----fDp----pWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|. ||. ||++..|.|++|||+|.|+.....+|.+..
T Consensus 455 I~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~ 497 (1010)
T 2xgj_A 455 FTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 497 (1010)
T ss_dssp ESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEEC
T ss_pred EeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEEC
Confidence 99 999 999999999999999999976666666654
No 38
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.90 E-value=2.8e-25 Score=263.77 Aligned_cols=201 Identities=14% Similarity=0.140 Sum_probs=153.8
Q ss_pred CCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccc-cccccccccCC----------CCCccccCCcccc
Q 000101 1727 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIA-VSGDSHMDHQQ----------SGSWTHDRDEGED 1794 (2239)
Q Consensus 1727 ~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya-~~~d~~~D~~~----------~~Sw~~~~~~~~d 1794 (2239)
+||.++.+| .+|++..|||||.+|++||||++ |..+| ++|. ++.++..|+.+ +||+|+ ++
T Consensus 43 ~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~t-I~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~ 114 (311)
T 2r0y_A 43 KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINE-IKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIV-----KN 114 (311)
T ss_dssp HSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHH-----HH
T ss_pred cCCchhHHhcCCCCcccCCChHHHcCCCCCHHH-HHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHH-----HH
Confidence 578999999 99999999999999999999999 99999 6666 89999999999 899988 55
Q ss_pred cccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCcc
Q 000101 1795 EQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSK 1874 (2239)
Q Consensus 1795 ~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 1874 (2239)
+..|+-.+.+ +|. +
T Consensus 115 A~~l~~~~~~-------------------------------------------------~~~-----------------k 128 (311)
T 2r0y_A 115 SMQVVMLIEF-------------------------------------------------EVL-----------------K 128 (311)
T ss_dssp HHHHHHHHHH-------------------------------------------------HHH-----------------H
T ss_pred HHHHHHHHHH-------------------------------------------------HHh-----------------h
Confidence 5544311111 000 0
Q ss_pred cccCCCccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHH-----
Q 000101 1875 SRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKL----- 1949 (2239)
Q Consensus 1875 ~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kl----- 1949 (2239)
. ..+ . + .. . . + +..| ..+++.|..|+...
T Consensus 129 ~-k~~--------------~---~-~~-~----i------------------~--~~~k--~~l~~~~~~l~~~~~~~i~ 162 (311)
T 2r0y_A 129 A-KNL--------------K---R-NY-L----I------------------N--SEVK--AKLLHYLNKLVDATEKKIN 162 (311)
T ss_dssp H-HTG--------------G---G-CC-B----C------------------C--HHHH--HHHHHHHHHHHHCCHHHHH
T ss_pred c-ccC--------------C---C-CC-C----C------------------C--hHHH--HHHHHHHHHHHhhhHHHHH
Confidence 0 000 0 0 01 0 0 0 0000 12344455554211
Q ss_pred ---HH-hh---ccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCC
Q 000101 1950 ---QR-RI---EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGF 2022 (2239)
Q Consensus 1950 ---~~-~~---d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~ 2022 (2239)
++ +. ..+||.++..|+.+|++.++||||+| |++||||.+|.+||++++|.++.+|..||.|||.||+.||++
T Consensus 163 ~~l~~~r~~k~~~~~~~~s~~F~~pvd~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~ 241 (311)
T 2r0y_A 163 QALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEI-VHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDP 241 (311)
T ss_dssp HHHHGGGSCSSCCCSSCTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHhccccccccccCCccHHHHhCCCChhhcccHHHH-hCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 11 11 23578999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHh-CCCC
Q 000101 2023 SHEVRSEARKVHDLFFDLLKIA-FPDT 2048 (2239)
Q Consensus 2023 ~sev~~dA~~L~~~f~~~~k~~-fP~~ 2048 (2239)
+|.||.+|..|+++|..+|+.. +|+.
T Consensus 242 ~s~i~~~A~~L~~~f~~~~~~~~~p~~ 268 (311)
T 2r0y_A 242 SALIYKDATTLTNYFNYLIQKEFFPEL 268 (311)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999984 6643
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.90 E-value=1.5e-22 Score=262.90 Aligned_cols=325 Identities=15% Similarity=0.106 Sum_probs=210.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slk 1077 (2239)
+|+|+|.+++..+ +..+.+.|++.+||+|||+++..++...+... .+.+|||+|.. |+.+|..++.++.+ ++.
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999863 23478899999999999999977766544322 36899999987 88899999966654 577
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccC--hhhHHHHHhhccccceEE
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQRRL 1153 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~rRL 1153 (2239)
+..+.|....... .....+|+|+|++.+...... ..-.++++|||||+|.+.+ ....+...+..++..+.+
T Consensus 105 v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii 179 (715)
T 2va8_A 105 VAMTSGDYDTDDA-----WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLL 179 (715)
T ss_dssp EEECCSCSSSCCG-----GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEE
T ss_pred EEEEeCCCCCchh-----hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcEE
Confidence 7777775432221 123789999999988764321 1123679999999999864 233344445566677889
Q ss_pred EecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHh
Q 000101 1154 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1233 (2239)
Q Consensus 1154 LLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKk 1233 (2239)
+||||+- +.. .|.+||..+..... .+
T Consensus 180 ~lSATl~--n~~------------------~~~~~l~~~~~~~~-------------------------~r--------- 205 (715)
T 2va8_A 180 ALSATIS--NYK------------------QIAKWLGAEPVATN-------------------------WR--------- 205 (715)
T ss_dssp EEESCCT--THH------------------HHHHHHTCEEEECC-------------------------CC---------
T ss_pred EEcCCCC--CHH------------------HHHHHhCCCccCCC-------------------------CC---------
Confidence 9999973 123 33334432110000 00
Q ss_pred hhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 000101 1234 DVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY 1313 (2239)
Q Consensus 1234 DVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~ 1313 (2239)
|-.....+...-... ....+ .+..
T Consensus 206 ------~~~l~~~~~~~~~~~-----------~~~~~---------------------------------------~~~~ 229 (715)
T 2va8_A 206 ------PVPLIEGVIYPERKK-----------KEYNV---------------------------------------IFKD 229 (715)
T ss_dssp ------SSCEEEEEEEECSST-----------TEEEE---------------------------------------EETT
T ss_pred ------CCCceEEEEecCCcc-----------cceee---------------------------------------ecCc
Confidence 000111100000000 00000 0000
Q ss_pred ccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC--------------------------
Q 000101 1314 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ-------------------------- 1367 (2239)
Q Consensus 1314 ~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG-------------------------- 1367 (2239)
.....+.....++.. +.++...+.++||||.....++.+...|....
T Consensus 230 ---~~~~~~~~~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (715)
T 2va8_A 230 ---NTTKKVHGDDAIIAY----TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302 (715)
T ss_dssp ---SCEEEEESSSHHHHH----HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHH
T ss_pred ---chhhhcccchHHHHH----HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccc
Confidence 000000000112222 22333468899999999999999988887542
Q ss_pred ----------CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE----cC-------CCCC
Q 000101 1368 ----------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-------PDPN 1426 (2239)
Q Consensus 1368 ----------iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi----fD-------ppWN 1426 (2239)
+.+..+||+++.++|..+++.|.++... +|++|.++++|||++++++||. || .|++
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s 379 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------C
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCC
Confidence 2477899999999999999999975433 7999999999999999999999 99 8999
Q ss_pred cchHHHhhhhhcccCCcceEEEEEEehh
Q 000101 1427 PKNEEQAVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1427 P~~dlQAiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
+..+.|+.|||+|.|+.+...+|.+.+-
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCC
Confidence 9999999999999998877777777653
No 40
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.90 E-value=7.1e-25 Score=265.23 Aligned_cols=212 Identities=13% Similarity=0.126 Sum_probs=158.5
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccc-cccccccccCC-------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIA-VSGDSHMDHQQ------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya-~~~d~~~D~~~------- 1781 (2239)
....+++.. ...+|.++.+| .+|++..|||||.+|++||||+. |..+| ++|. ++.++..|+.+
T Consensus 82 ~~~~~l~~l-----~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~t-I~~kl--~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 82 FISFTLDVL-----IDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINE-IKSRD--YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp HHHHHHHHH-----HHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHTSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHH-HHHHh--hccCCCHHHHHHHHHHHHHHHhh
Confidence 344455544 33678899999 99999999999999999999999 99998 5665 79999999999
Q ss_pred ---CCCccccCCcccccccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhh
Q 000101 1782 ---SGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAH 1858 (2239)
Q Consensus 1782 ---~~Sw~~~~~~~~d~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1858 (2239)
+||+|+ .++..|+-.+.+ +|.
T Consensus 154 yN~~~s~i~-----~~a~~l~~~~~~-------------------------------------------------~~~-- 177 (361)
T 2r10_A 154 YNEYDSLIV-----KNSMQVVMLIEF-------------------------------------------------EVL-- 177 (361)
T ss_dssp HBCSSSHHH-----HHHHHHHHHHHH-------------------------------------------------HHH--
T ss_pred cCCCCCHHH-----HHHHHHHHHHHH-------------------------------------------------HHh--
Confidence 899988 665554311111 000
Q ss_pred cCCccccCCCCCCCcccccCCCccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHH
Q 000101 1859 GESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVI 1938 (2239)
Q Consensus 1859 ~~~~~~~~~q~~~~~~~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~m 1938 (2239)
+. ..+ +.. + .. + +. ....+
T Consensus 178 ---------------k~-k~~------------------~~~-~----~i------------------~--~~--~k~~l 196 (361)
T 2r10_A 178 ---------------KA-KNL------------------KRN-Y----LI------------------N--SE--VKAKL 196 (361)
T ss_dssp ---------------HH-HTT------------------TTC-C----BC------------------C--HH--HHHHH
T ss_pred ---------------hc-ccc------------------CCc-C----cC------------------C--HH--HHHHH
Confidence 00 000 000 1 00 0 00 01223
Q ss_pred HHHHHHHHHHHH----Hh--------hccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHH
Q 000101 1939 QRRCKNVISKLQ----RR--------IEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2006 (2239)
Q Consensus 1939 q~kck~vl~kl~----~~--------~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2006 (2239)
++.|..|++... .. ...+||.++..|+.+|++.++||||+| |++||||.+|..||+.++|.++.+|+
T Consensus 197 ~~~~~~l~~~~~~~i~~~~~~~r~~~~~~~~~~~s~~F~~pvd~~~~PdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~ 275 (361)
T 2r10_A 197 LHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEI-VHSPMALSIVKQNLEIGQYSKIYDFI 275 (361)
T ss_dssp HHHHHHHHHCCHHHHHHHHHGGGCCSSCCCSSCTTGGGSSCCCTTTCTHHHHH-CSSCCCHHHHHHHHHHTCCCBHHHHH
T ss_pred HHHHHHhhccchHHHHHHHhccccccccccCCcchhcccCCCChhhcccHHHH-hcCcccHHHHHHHHhcCCCCCHHHHH
Confidence 344555543211 10 023588999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh-CCCC
Q 000101 2007 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA-FPDT 2048 (2239)
Q Consensus 2007 ~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~-fP~~ 2048 (2239)
.||.|||.||+.||+++|.||.+|..|+++|..+|+.. +|+.
T Consensus 276 ~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~p~~ 318 (361)
T 2r10_A 276 IDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEFFPEL 318 (361)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999984 6643
No 41
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1e-22 Score=275.84 Aligned_cols=348 Identities=16% Similarity=0.066 Sum_probs=213.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
.+|+|||.+++..+.. +.+.|++.+||+|||++++..+...+. ..+.+|||+|+. |+.||..+|.+++. .
T Consensus 183 f~ltp~Q~~AI~~i~~----g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~~--~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG--D 253 (1108)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHTS--S
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcCcHHHHHHHHHHHHHHhC--C
Confidence 4799999999988754 778999999999999998877776653 345799999976 88899999999987 4
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccCh--hhHHHHHhhcccc-ceE
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC-QRR 1152 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lka-~rR 1152 (2239)
+.++.|.... ....+|+|+|++.|...... ..-.++.+|||||||++.+. ...+...+..+.. .+.
T Consensus 254 VglltGd~~~---------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qv 324 (1108)
T 3l9o_A 254 VGLMTGDITI---------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 324 (1108)
T ss_dssp EEEECSSCBC---------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEE
T ss_pred ccEEeCcccc---------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceE
Confidence 5566665432 24689999999998765321 11236899999999999763 2334444445543 457
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhH
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1232 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlK 1232 (2239)
|+|||| +.|. .++..++..+... |....
T Consensus 325 l~lSAT-ipn~-~e~a~~l~~~~~~--------------~~~vi------------------------------------ 352 (1108)
T 3l9o_A 325 VFLSAT-IPNA-MEFAEWICKIHSQ--------------PCHIV------------------------------------ 352 (1108)
T ss_dssp EEEECS-CSSC-HHHHHHHHHHTCS--------------CEEEE------------------------------------
T ss_pred EEEcCC-CCCH-HHHHHHHHhhcCC--------------CeEEE------------------------------------
Confidence 889999 3333 3333333222110 00000
Q ss_pred hhhhcCCCCceEEEEEe-----------ccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1233 EDVEGSLPPKVSIVLRC-----------RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1233 kDVekdLP~K~e~VV~c-----------~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
....-|....+.++. .........|.......... .. .. .... ..+
T Consensus 353 --~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~----~~-----~~------~~~~------~~~ 409 (1108)
T 3l9o_A 353 --YTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ----IG-----DD------PNST------DSR 409 (1108)
T ss_dssp --EECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------------
T ss_pred --ecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhh----hc-----cc------cccc------ccc
Confidence 000001111111110 00111111111111000000 00 00 0000 000
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhc-CCeEEEEEccHHHHHHHHHHHHHcCCe-----------
Q 000101 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV----------- 1369 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkat-GhKVLIFSQ~t~~LDILed~L~~rGik----------- 1369 (2239)
..... .+ . .. .........+..++..+... +.++||||.....++.+...|...++.
T Consensus 410 ~~~~~--~~---~---~~---~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~ 478 (1108)
T 3l9o_A 410 GKKGQ--TY---K---GG---SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI 478 (1108)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHH
T ss_pred ccccc--cc---c---cc---cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 00000 00 0 00 00000133344455555443 469999999999999999888543332
Q ss_pred ----------------------------EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEc
Q 000101 1370 ----------------------------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1421 (2239)
Q Consensus 1370 ----------------------------y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIif 1421 (2239)
+..+||+++..+|..+++.|..+... +|++|+++++|||++++++||++
T Consensus 479 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~ 555 (1108)
T 3l9o_A 479 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTS 555 (1108)
T ss_dssp GGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESC
T ss_pred HHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEec
Confidence 67899999999999999999976555 79999999999999999999999
Q ss_pred CCCCCcch--------HHHhhhhhcccCCcceEEEEEEeh
Q 000101 1422 DPDPNPKN--------EEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1422 DppWNP~~--------dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+.+|++.. |.|++|||+|.|......+|.+..
T Consensus 556 ~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~ 595 (1108)
T 3l9o_A 556 VRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 595 (1108)
T ss_dssp SEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEEC
T ss_pred CcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Confidence 99887765 999999999999877776766644
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.90 E-value=4.7e-23 Score=267.54 Aligned_cols=316 Identities=16% Similarity=0.117 Sum_probs=211.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slk 1077 (2239)
+|+|||.+++..+.. +.+.|++.+||+|||+++...+...+. ..+.+|||+|.. |+.+|..++.+|.+ ++.
T Consensus 25 ~l~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~---~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHH---hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 799999999998553 778999999999999999776665543 246899999987 88999999976654 577
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccC--hhhHHHHHhhcc----cc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRY----RC 1149 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN--~~SKlskaLk~L----ka 1149 (2239)
+..+.|....... .....+|+|+|++.+...... ..-.++.+|||||+|.+.+ ....+...+..+ ..
T Consensus 98 v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~ 172 (702)
T 2p6r_A 98 IGISTGDYESRDE-----HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKA 172 (702)
T ss_dssp EEEECSSCBCCSS-----CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTT
T ss_pred EEEEeCCCCcchh-----hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcC
Confidence 7788876433221 123789999999998654322 1123678999999999865 333333333333 34
Q ss_pred ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhh
Q 000101 1150 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1229 (2239)
Q Consensus 1150 ~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLR 1229 (2239)
.+.++||||+- +.. .|.+||..+.....
T Consensus 173 ~~ii~lSATl~--n~~------------------~~~~~l~~~~~~~~-------------------------------- 200 (702)
T 2p6r_A 173 LRVIGLSATAP--NVT------------------EIAEWLDADYYVSD-------------------------------- 200 (702)
T ss_dssp CEEEEEECCCT--THH------------------HHHHHTTCEEEECC--------------------------------
T ss_pred ceEEEECCCcC--CHH------------------HHHHHhCCCcccCC--------------------------------
Confidence 56899999962 233 33344432211000
Q ss_pred HhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
.-|-.....+...- ....... .. .
T Consensus 201 --------~r~~~l~~~~~~~~---------------~~~~~~~-~~----~---------------------------- 224 (702)
T 2p6r_A 201 --------WRPVPLVEGVLCEG---------------TLELFDG-AF----S---------------------------- 224 (702)
T ss_dssp --------CCSSCEEEEEECSS---------------EEEEEET-TE----E----------------------------
T ss_pred --------CCCccceEEEeeCC---------------eeeccCc-ch----h----------------------------
Confidence 00111111110000 0000000 00 0
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-----------------------
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR----------------------- 1366 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r----------------------- 1366 (2239)
.. ..-.+...+ .++...+.++||||.....++.+...|...
T Consensus 225 ---~~---------~~~~~~~~~----~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~ 288 (702)
T 2p6r_A 225 ---TS---------RRVKFEELV----EECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS 288 (702)
T ss_dssp ---EE---------EECCHHHHH----HHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHH
T ss_pred ---hh---------hhhhHHHHH----HHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccccc
Confidence 00 000022222 223346889999999999988888877643
Q ss_pred -------CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE----cC---CCCCcchHHH
Q 000101 1367 -------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD---PDPNPKNEEQ 1432 (2239)
Q Consensus 1367 -------Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi----fD---ppWNP~~dlQ 1432 (2239)
++.+..+||+++.++|..+++.|.++... +|++|.++++|||++++++||. || .|+++..+.|
T Consensus 289 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Q 365 (702)
T 2p6r_A 289 RKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQ 365 (702)
T ss_dssp HHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHH
T ss_pred HHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHH
Confidence 12456699999999999999999975444 7999999999999999999999 77 7899999999
Q ss_pred hhhhhcccCCcceEEEEEEehh
Q 000101 1433 AVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1433 AiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
++|||+|.|+.+...+|.+.+-
T Consensus 366 r~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 366 MAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp HHTTBSCTTTCSCEEEEEECCG
T ss_pred HhhhcCCCCCCCCceEEEEecC
Confidence 9999999998877777777653
No 43
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.89 E-value=9.9e-23 Score=265.19 Aligned_cols=315 Identities=15% Similarity=0.094 Sum_probs=210.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slk 1077 (2239)
+|+|||.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|.. |+.+|..+|.+|.+ ++.
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~~ 97 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGLR 97 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCCE
Confidence 7999999999862 22377899999999999999865555443322 36899999975 88999999977654 678
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccC--hhhHHHHHhhccc-cceE
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQRR 1152 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~rR 1152 (2239)
+..++|......+ .....+|+|+|++.+...... ..-.++++|||||+|.+.. ....+...+..++ ..++
T Consensus 98 v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~i 172 (720)
T 2zj8_A 98 VAMATGDYDSKDE-----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQI 172 (720)
T ss_dssp EEEECSCSSCCCG-----GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEE
T ss_pred EEEecCCCCcccc-----ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeE
Confidence 8888886432221 124789999999998654321 1123679999999999964 3333444444554 4678
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhH
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1232 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlK 1232 (2239)
++||||+- +.. .|.+||..+....
T Consensus 173 i~lSATl~--n~~------------------~~~~~l~~~~~~~------------------------------------ 196 (720)
T 2zj8_A 173 IGLSATIG--NPE------------------ELAEWLNAELIVS------------------------------------ 196 (720)
T ss_dssp EEEECCCS--CHH------------------HHHHHTTEEEEEC------------------------------------
T ss_pred EEEcCCcC--CHH------------------HHHHHhCCcccCC------------------------------------
Confidence 99999962 223 3334432211000
Q ss_pred hhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000101 1233 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1312 (2239)
Q Consensus 1233 kDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p 1312 (2239)
..-|-.....+...- ...... ..
T Consensus 197 ----~~rp~~l~~~~~~~~---------------~~~~~~--------~~------------------------------ 219 (720)
T 2zj8_A 197 ----DWRPVKLRRGVFYQG---------------FVTWED--------GS------------------------------ 219 (720)
T ss_dssp ----CCCSSEEEEEEEETT---------------EEEETT--------SC------------------------------
T ss_pred ----CCCCCcceEEEEeCC---------------eeeccc--------cc------------------------------
Confidence 000111111111000 000000 00
Q ss_pred CccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc------------------C-------
Q 000101 1313 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR------------------Q------- 1367 (2239)
Q Consensus 1313 ~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r------------------G------- 1367 (2239)
. . ....++..+.+ +...++++||||.....++.+...|... +
T Consensus 220 -~-~-------~~~~~~~~~~~----~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 286 (720)
T 2zj8_A 220 -I-D-------RFSSWEELVYD----AIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTN 286 (720)
T ss_dssp -E-E-------ECSSTTHHHHH----HHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHH
T ss_pred -h-h-------hhhHHHHHHHH----HHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccch
Confidence 0 0 00112222222 2346789999999999998888888643 1
Q ss_pred --------CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE----cC----CCCCcchHH
Q 000101 1368 --------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD----PDPNPKNEE 1431 (2239)
Q Consensus 1368 --------iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi----fD----ppWNP~~dl 1431 (2239)
..+..+||+++.++|..+++.|.++... +|++|.++++|||++++++||. || .|+++..+.
T Consensus 287 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~ 363 (720)
T 2zj8_A 287 EKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVH 363 (720)
T ss_dssp HHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHH
T ss_pred HHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHH
Confidence 2378899999999999999999975444 7999999999999999999998 88 689999999
Q ss_pred HhhhhhcccCCcceEEEEEEeh
Q 000101 1432 QAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1432 QAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|++|||+|.|+.+...+|.+.+
T Consensus 364 Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 364 QMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHhhcCCCCCCCCceEEEEec
Confidence 9999999999877766776655
No 44
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.6e-23 Score=216.92 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=110.8
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHH
Q 000101 1928 SNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2007 (2239)
Q Consensus 1928 ~~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2007 (2239)
...+.+.++.++++|+.||+.|.+.+|..||.++..|+.+|++.++||||++ |++||||.+|++||+.++|.++++|..
T Consensus 4 ~~~~~~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~ 82 (123)
T 2dat_A 4 GSSGSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLGDLEK 82 (123)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHH-CSSCCCHHHHHHHHTTTCCCSHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhCCCCCCHHHHHH
Confidence 4455678899999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2008 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2008 D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||+|||+||+.||+++|.||.+|..|+++|..+++..
T Consensus 83 D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 83 DVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999988754
No 45
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.89 E-value=9.7e-22 Score=263.83 Aligned_cols=353 Identities=15% Similarity=0.152 Sum_probs=211.3
Q ss_pred CChHHHHHHHHHHHHhhc----------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYN----------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSE 1068 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~----------n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~E 1068 (2239)
.|||||..++.+++..+. .+.+||+++.||+|||++++.++ .++...+...++|||||.. |..||..+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999999987543 23679999999999999986655 4443233446899999955 88999999
Q ss_pred HHHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---c-ccCCceEEEecccccccChhhHHHHHh
Q 000101 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---L-SKVDWKYIIIDEAQRMKDRESVLARDL 1144 (2239)
Q Consensus 1069 f~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L-~kikWd~VIIDEAHrIKN~~SKlskaL 1144 (2239)
|..|.+... + +. ..+..+...+.....+|+|||++.|...... + ....+.+||||||||+... ..++.|
T Consensus 350 f~~f~~~~v---~-~~-~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--~~~~~I 422 (1038)
T 2w00_A 350 YQRFSPDSV---N-GS-ENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--EAQKNL 422 (1038)
T ss_dssp HHTTSTTCS---S-SS-CCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--HHHHHH
T ss_pred HHHhccccc---c-cc-cCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--HHHHHH
Confidence 999987521 1 21 1122333334445789999999999865321 1 1236899999999998532 233334
Q ss_pred -hccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 000101 1145 -DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1223 (2239)
Q Consensus 1145 -k~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklL 1223 (2239)
..++...+|+|||||+...-. .+. ......|+.++.... +...+
T Consensus 423 ~~~~p~a~~lgfTATP~~~~~~-------------~~~-~~t~~~FG~~i~~Y~---------------------l~~AI 467 (1038)
T 2w00_A 423 KKKFKRYYQFGFTGTPIFPENA-------------LGS-ETTASVFGRELHSYV---------------------ITDAI 467 (1038)
T ss_dssp HHHCSSEEEEEEESSCCCSTTC-------------TTS-CCHHHHHCSEEEEEC---------------------HHHHH
T ss_pred HHhCCcccEEEEeCCccccccc-------------hhh-hHHHHHhCCeeEeec---------------------HHHHH
Confidence 456777899999999764210 000 011122222222110 00000
Q ss_pred hhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000101 1224 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1303 (2239)
Q Consensus 1224 rPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKi 1303 (2239)
.+ ..-+|.. +.+....+. |..+. .+. +.. .+ ..+
T Consensus 468 ---------~d-g~l~p~~---v~y~~v~~~----~~~~~------~e~-d~~------------~~----------~~i 501 (1038)
T 2w00_A 468 ---------RD-EKVLKFK---VDYNDVRPQ----FKSLE------TET-DEK------------KL----------SAA 501 (1038)
T ss_dssp ---------HH-TSSCCEE---EEECCCCGG----GHHHH------TCC-CHH------------HH----------HHT
T ss_pred ---------hC-CCcCCeE---EEEEeccch----hhhcc------ccc-cHH------------HH----------HHH
Confidence 00 0001211 111111110 00000 000 000 00 000
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHH-HHHHHHHHHh---------cCCeEEEEEccHHHHHHHHHHHHHcC------
Q 000101 1304 CNHPLLNYPYFSDLSKDFLVKSCGKLWI-LDRILIKLQR---------TGHRVLLFSTMTKLLDILEEYLQWRQ------ 1367 (2239)
Q Consensus 1304 CnHP~L~~p~~~~~s~d~Li~~SGKLel-LdrIL~kLka---------tGhKVLIFSQ~t~~LDILed~L~~rG------ 1367 (2239)
- +-. ++....++.. +..|+..+.. .+.++||||..+..+..+...|...+
T Consensus 502 ~-~~~-------------~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~ 567 (1038)
T 2w00_A 502 E-NQQ-------------AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANK 567 (1038)
T ss_dssp C-STT-------------TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTT
T ss_pred H-HHH-------------HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccc
Confidence 0 000 0000112222 2233333321 35689999999999999998887654
Q ss_pred ------CeE-EeecCC----------C----------CH-----------------------------HHHHHHHHHHhc
Q 000101 1368 ------LVY-RRIDGT----------T----------SL-----------------------------EDRESAIVDFNS 1391 (2239)
Q Consensus 1368 ------iky-~RLDGs----------t----------s~-----------------------------eeRqeiL~~FNs 1391 (2239)
+++ +.++|. + +. ..|..++++|.+
T Consensus 568 ~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~ 647 (1038)
T 2w00_A 568 SATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKN 647 (1038)
T ss_dssp SSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT
T ss_pred ccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHc
Confidence 444 456653 2 11 148889999997
Q ss_pred CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCc--ceEEEEEEehhhhhhh
Q 000101 1392 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK--REVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1392 ~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQk--KeV~VyrLvaVEEkI~ 1459 (2239)
+..+ |||+++.+.+|+|.+.+ .|+++|.|.+.+.++||+||+.|.+.. ....|+.++.+.+.+.
T Consensus 648 g~i~---ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~~l~ 713 (1038)
T 2w00_A 648 QDID---LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTI 713 (1038)
T ss_dssp TSSS---EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHHHHH
T ss_pred CCCe---EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccccHHHHH
Confidence 5444 68899999999999999 678899999999999999999999864 3477888876555443
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.89 E-value=4.7e-22 Score=269.31 Aligned_cols=277 Identities=17% Similarity=0.240 Sum_probs=193.2
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PS 1075 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa-Ps 1075 (2239)
+.+++|+|..++..++. +.+.|++..||+|||+.++.++..++ ...+.+|||+|+. |+.||...|.++. .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 34799999999988775 67889999999999997666665554 3456799999977 8899999999976 35
Q ss_pred CceEEEecchhh--HHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChh-------------hH-
Q 000101 1076 VSCIYYVGAKDQ--RSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE-------------SV- 1139 (2239)
Q Consensus 1076 lkvvvy~Gskd~--Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~-------------SK- 1139 (2239)
+.+.+++|.... +......+..+.++|+|+|++.+.+....+...++++|||||||++.... ..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~ 228 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 228 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHH
Confidence 688888887543 34444456666799999999999877666666789999999999864311 11
Q ss_pred HHHHhhccc------------cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000101 1140 LARDLDRYR------------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1207 (2239)
Q Consensus 1140 lskaLk~Lk------------a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l 1207 (2239)
+...+..++ ....+++||||....+.+.+ +...+. +...
T Consensus 229 i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------~~~~l~--i~v~----------- 279 (1104)
T 4ddu_A 229 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLN--FTVG----------- 279 (1104)
T ss_dssp HHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH----------------HHHHTC--CCCC-----------
T ss_pred HHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH----------------hhccee--EEec-----------
Confidence 233333332 34678899997555432211 000000 0000
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHH
Q 000101 1208 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1287 (2239)
Q Consensus 1208 ~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~ 1287 (2239)
. ....+...... ++
T Consensus 280 --------------------------~-~~~~~~~i~~~-~~-------------------------------------- 293 (1104)
T 4ddu_A 280 --------------------------R-LVSVARNITHV-RI-------------------------------------- 293 (1104)
T ss_dssp --------------------------B-CCCCCCCEEEE-EE--------------------------------------
T ss_pred --------------------------c-CCCCcCCceeE-EE--------------------------------------
Confidence 0 00000010000 00
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC
Q 000101 1288 KVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1367 (2239)
Q Consensus 1288 k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG 1367 (2239)
.+.|...|..+|.. .+.++||||+....++.|..+|...|
T Consensus 294 -------------------------------------~~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g 333 (1104)
T 4ddu_A 294 -------------------------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFK 333 (1104)
T ss_dssp -------------------------------------SCCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTT
T ss_pred -------------------------------------ecCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCC
Confidence 01233444445544 35899999999999999999999999
Q ss_pred CeEE-eecCCCCHHHHHHHHHHHhcCCCCccEEEEe----ccccccccCCCc-CceEEEcCCCC
Q 000101 1368 LVYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPDP 1425 (2239)
Q Consensus 1368 iky~-RLDGsts~eeRqeiL~~FNs~ds~~~VfLLS----TrAGGeGLNLqa-ADtVIifDppW 1425 (2239)
+.+. .+|| +|.+ ++.|+++..+ +||+ |+++++|||+++ +++||+||+|-
T Consensus 334 ~~~~~~lhg-----~rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 334 FNVGETWSE-----FEKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp CCEEESSSS-----HHHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCeeeEecC-----cHHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9998 9999 3556 9999985544 5777 999999999999 99999999998
No 47
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.88 E-value=8.6e-22 Score=264.65 Aligned_cols=375 Identities=18% Similarity=0.121 Sum_probs=217.0
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
+.+|+|||.+++..++. +.+.|++.+||+|||++++..+..+.. ..+.+|||+|+. |+.||..+|.++++++
T Consensus 37 ~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp SSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 45899999999988765 678899999999999987766665543 235689999976 8899999999999888
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhcccc-ce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRC-QR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka-~r 1151 (2239)
.+.+++|.... ....+|+|+|++.+..... .+...++.+|||||||++.+ ....+...+..++. ..
T Consensus 110 ~v~~l~G~~~~---------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 110 NIGLITGDVQI---------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp CEEEECSSCEE---------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCE
T ss_pred eEEEEeCCCcc---------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCC
Confidence 88888887542 2457999999999976532 22234789999999999865 33445555666654 46
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.++|||||- +. ..|.+|+....... + +++
T Consensus 181 iIlLSAT~~--n~------------------~ef~~~l~~~~~~~--------------------------~--~vi--- 209 (997)
T 4a4z_A 181 FILLSATVP--NT------------------YEFANWIGRTKQKN--------------------------I--YVI--- 209 (997)
T ss_dssp EEEEECCCT--TH------------------HHHHHHHHHHHTCC--------------------------E--EEE---
T ss_pred EEEEcCCCC--Ch------------------HHHHHHHhcccCCc--------------------------e--EEE---
Confidence 788999962 12 23444442100000 0 000
Q ss_pred HhhhhcCCCCceEEEEEe---------ccCHHHHHHHHHHHHh----cCcccCchh--HHhhhhcChhhH---HHHH---
Q 000101 1232 VEDVEGSLPPKVSIVLRC---------RMSAIQSAIYDWIKAT----GTLRVDPED--EKRRVQKNPIYQ---AKVY--- 1290 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c---------~MS~~Qr~LY~~I~~~----~~l~l~~~~--ek~~l~k~~~~~---~k~~--- 1290 (2239)
.....|...++.++. .........|...... ......... .+.......... .+..
T Consensus 210 ---~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~ 286 (997)
T 4a4z_A 210 ---STPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGG 286 (997)
T ss_dssp ---ECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------------------------------
T ss_pred ---ecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence 000011111111110 0000111111111100 000000000 000000000000 0000
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCccccchhhHh---hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC
Q 000101 1291 KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLV---KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1367 (2239)
Q Consensus 1291 ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li---~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG 1367 (2239)
..-...-..-+..+..+.. .......+.. ....++..|..+|.. ....++||||.....++.+..+|...+
T Consensus 287 ~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~ 360 (997)
T 4a4z_A 287 RGNSTRGGANRGGSRGAGA----IGSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGIN 360 (997)
T ss_dssp ----------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCC
T ss_pred ccccccccccccccccccc----ccccccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCC
Confidence 0000000000000000000 0000000000 112234444444433 235799999999999999999987655
Q ss_pred C---------------------------------------eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccc
Q 000101 1368 L---------------------------------------VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1408 (2239)
Q Consensus 1368 i---------------------------------------ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGe 1408 (2239)
+ .+..+||+++..+|..+++.|..+..+ +|++|.++++
T Consensus 361 ~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a~ 437 (997)
T 4a4z_A 361 FCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFAM 437 (997)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhhC
Confidence 5 467899999999999999999975544 7999999999
Q ss_pred ccCCCcCceEEEcCCCC---------CcchHHHhhhhhcccCCcceEEEEEEe
Q 000101 1409 GLNLQSADTVIIYDPDP---------NPKNEEQAVARAHRIGQKREVKVIYME 1452 (2239)
Q Consensus 1409 GLNLqaADtVIifDppW---------NP~~dlQAiGRAhRIGQkKeV~VyrLv 1452 (2239)
|||+++ .+||+++.++ ++..|.|++|||+|.|......+|.+.
T Consensus 438 GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 438 GLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp SCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 999999 7777766655 999999999999999988777777664
No 48
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.88 E-value=1.1e-23 Score=245.59 Aligned_cols=199 Identities=12% Similarity=0.116 Sum_probs=151.5
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+|+...|||||.+|++||||++ |..+|+.|.|.++.++..|+.+ ++|+++ ..+..|
T Consensus 30 ~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~l 103 (265)
T 3uv5_A 30 PNTYPFHTPVNAKVVKDYYKIITRPMDLQT-LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT-----QISQSM 103 (265)
T ss_dssp TTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH-----HHHHHH
T ss_pred CCchhhhCCCChhhcCCHHHHhCCCCcHHH-HHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHH-----HHHHHH
Confidence 357889 89999999999999999999999 9999999999999999999998 778777 443332
Q ss_pred cccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCcccccC
Q 000101 1799 QPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN 1878 (2239)
Q Consensus 1799 ~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~ 1878 (2239)
.-...+ .|..+.
T Consensus 104 ~~~~~~-------------------------------------------------~~~~~~------------------- 115 (265)
T 3uv5_A 104 LDLCDE-------------------------------------------------KLKEKE------------------- 115 (265)
T ss_dssp HHHHHH-------------------------------------------------HHHHTH-------------------
T ss_pred HHHHHH-------------------------------------------------HHHHHh-------------------
Confidence 211000 000000
Q ss_pred CCccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhhccCCC
Q 000101 1879 LPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGH 1958 (2239)
Q Consensus 1879 lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr 1958 (2239)
+...... +.++...... -+..|..++..+... .-..+
T Consensus 116 ----------------------------~~~~~~e------k~i~p~~dd~--------~~~~~~~il~~i~~~-~l~~~ 152 (265)
T 3uv5_A 116 ----------------------------DKLARLE------KAINPLLDDD--------DQVAFSFILDNIVTQ-KMMAV 152 (265)
T ss_dssp ----------------------------HHHHHHH------HHHSTTTTCH--------HHHHHHHHHHHHHHH-TTTTS
T ss_pred ----------------------------hhhhhhh------hhhhhccccc--------hhhHHHHHHHHHHHH-HHHhh
Confidence 0001111 2223221111 133455555554322 12456
Q ss_pred cchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHH
Q 000101 1959 QIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFF 2038 (2239)
Q Consensus 1959 ~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~ 2038 (2239)
..+..|+.++++..+||||++ |++||||.+|..||+.+.|.++.+|..||.|||+||+.||+++|.||.+|..|+++|.
T Consensus 153 ~~~~~F~~pv~~~~~pdY~~i-Ik~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~ 231 (265)
T 3uv5_A 153 PDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 231 (265)
T ss_dssp TTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHhCCCChhHhCcHHHH-hCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 778999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 000101 2039 DLLKIAFP 2046 (2239)
Q Consensus 2039 ~~~k~~fP 2046 (2239)
..++..-.
T Consensus 232 ~~~~~~~~ 239 (265)
T 3uv5_A 232 QTLTEYDE 239 (265)
T ss_dssp HHHHHTHH
T ss_pred HHHHHHHH
Confidence 99987643
No 49
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.88 E-value=5.6e-23 Score=214.70 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=109.8
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHH
Q 000101 1928 SNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2007 (2239)
Q Consensus 1928 ~~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2007 (2239)
.....|+...++++|++||+.|.+.+|.+||.++..|+.+|++.++||||++ |++||||.+|.+||+.++|.++.+|..
T Consensus 6 ~~k~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~ 84 (124)
T 3mb4_A 6 SPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLT-IKKPMDMEKIRSHMMANKYQDIDSMVE 84 (124)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHH
T ss_pred CCCccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHHH
Confidence 3345578889999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000101 2008 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2045 (2239)
Q Consensus 2008 D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~f 2045 (2239)
||.|||.||+.||+++|.+|.+|..|+++|..+++...
T Consensus 85 D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 85 DFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998764
No 50
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.88 E-value=4.4e-23 Score=213.09 Aligned_cols=112 Identities=21% Similarity=0.293 Sum_probs=107.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2013 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~ 2013 (2239)
|+....++|++|++.|.+.+|++||.++..|+.+|++.++||||++ |++||||.+|.+||+.++|.++.+|..||+|||
T Consensus 2 m~~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 80 (116)
T 3iu5_A 2 MTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEV-VSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF 80 (116)
T ss_dssp CSCCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHH-hCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445567999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2014 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2014 ~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
.||+.||+++|+||.+|..|+++|..+++..+.
T Consensus 81 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 81 NNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998876
No 51
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=212.11 Aligned_cols=111 Identities=14% Similarity=0.228 Sum_probs=107.9
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
+..++++|+++++.|.+.+|++||.++..|+.+|++.++||||++ |++||||.+|.+||+.++|.++.+|..||+|||+
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEK-ISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHH-CSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
||+.||+++|.+|.+|..|+++|..+++.+.|
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 117 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASA 117 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876
No 52
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.87 E-value=2.1e-22 Score=209.25 Aligned_cols=108 Identities=16% Similarity=0.292 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
++.+++.|+.+++.|.+.+|.+||.++..|+.+|++.++||||++ |++||||.+|..||+.+.|.++.+|..||.|||.
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAI-IKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
||+.||+++|.||.+|..|+++|..+++.
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAE 113 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 53
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=2.3e-22 Score=237.35 Aligned_cols=197 Identities=12% Similarity=0.138 Sum_probs=148.1
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+|+...|||||.+|++||||++ |..+|+.|+|.+..++..|+.+ ++|+++ ..+..|
T Consensus 63 ~~a~~F~~pV~~~~~pdY~~iIk~PmDL~t-Ik~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~L 136 (292)
T 3aad_A 63 PNTYPFHTPVNAKVVKDYYKIITRPMDLQT-LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT-----QISQSM 136 (292)
T ss_dssp TTCGGGSSSCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHH-----HHHTHH
T ss_pred CcchhhcCCCCchhcccHHHHcCCcCCHHH-HHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHH-----HHHHHH
Confidence 457889 88999999999999999999999 9999999999999999999998 888888 555554
Q ss_pred c-ccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCccccc
Q 000101 1799 Q-PKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRR 1877 (2239)
Q Consensus 1799 ~-~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~r 1877 (2239)
. -+.++-..++. ... +...
T Consensus 137 ~~~~~~~~~~~~~-------------------------------------------~~~-----------------~~e~ 156 (292)
T 3aad_A 137 LDLCDEKLKEKED-------------------------------------------KLA-----------------RLEK 156 (292)
T ss_dssp HHTTTTTGGGSHH-------------------------------------------HHH-----------------HHHH
T ss_pred HHHHHhhhhcchh-------------------------------------------hhh-----------------hhhh
Confidence 4 11111100000 000 0000
Q ss_pred CCCccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhhccCC
Q 000101 1878 NLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEG 1957 (2239)
Q Consensus 1878 ~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kl~~~~d~~G 1957 (2239)
. + +|. ..++ + . -.+...|++++.. .-..
T Consensus 157 ~-----i-~Pl----------------~dd~--~-------------------~----~~~~~~l~~i~~~-----~l~~ 184 (292)
T 3aad_A 157 A-----I-NPL----------------LDDD--D-------------------Q----VAFSFILDNIVTQ-----KMMA 184 (292)
T ss_dssp T-----T-SSS----------------TTCH--H-------------------H----HHHHHHHHHHHHH-----TGGG
T ss_pred c-----c-ccc----------------cccc--h-------------------h----HHHHHHHHHHhhh-----hhhc
Confidence 0 0 000 0000 0 0 0122223444321 1124
Q ss_pred CcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Q 000101 1958 HQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLF 2037 (2239)
Q Consensus 1958 r~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f 2037 (2239)
+..+..|+.+|++.++||||++ |++||||.+|..||+.++|.++.+|..||.|||+||+.||+++|.+|.+|..|+++|
T Consensus 185 ~~~s~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~ 263 (292)
T 3aad_A 185 VPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVC 263 (292)
T ss_dssp STTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred CcchhHHHhcccccccccHHHH-cCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q 000101 2038 FDLLKIAF 2045 (2239)
Q Consensus 2038 ~~~~k~~f 2045 (2239)
.+.++..-
T Consensus 264 ~~~~~~~~ 271 (292)
T 3aad_A 264 YQTLTEYD 271 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998753
No 54
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=211.30 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1936 DVIQRRCKNVISKLQRRIE-KEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d-~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
..-...|+.+++.|....+ ..||.++.+|+.+|.+.++||||++ |++||||.+|.+||+.++|.++.+|..||.|||.
T Consensus 23 ~~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~ 101 (150)
T 3tlp_A 23 NIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKI-ILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFR 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3446679999999998885 6799999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC--CCCchHHhh
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLLKIAF--PDTDFREAR 2054 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~k~~f--P~~df~~a~ 2054 (2239)
||+.||+++|.||.+|..|+++|..+++..+ ||.|+....
T Consensus 102 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d~~~~p 143 (150)
T 3tlp_A 102 NARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDMASP 143 (150)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC---------
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChhhcCCc
Confidence 9999999999999999999999999999999 577765543
No 55
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.84 E-value=1.9e-21 Score=204.88 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=107.4
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
..-.+.|.+.|+.|+..|.+.+|..||.++..|+.+|++.++||||++ |++||||.+|..||+.+.|.++.+|..||.|
T Consensus 12 ~~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~i-Ik~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~L 90 (130)
T 3k2j_A 12 DLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQ-IKMPISLQQIRTKLKNQEYETLDHLECDLNL 90 (130)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 344578888999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||.||+.||+++|.||++|..|+++|..+++..
T Consensus 91 if~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 91 MFENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 56
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.84 E-value=2.8e-21 Score=203.28 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=106.5
Q ss_pred CcHHHHHHHHHHHHHHHHhhcc-CCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEK-EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2012 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~-~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM 2012 (2239)
-++.++++|+.||+.|....|. .||.++..|+.+|++.++||||.+ |++||||.+|.+||+.++|.++.+|..||.||
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3578999999999999988764 899999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2013 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2013 ~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
|.||+.||+++|.||.+|..|+++|...++....
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 120 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK 120 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999987654
No 57
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.83 E-value=2.5e-20 Score=252.05 Aligned_cols=269 Identities=18% Similarity=0.248 Sum_probs=172.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs-- 1075 (2239)
.++ |+|.+++..++. +.+.|++.+||+|||+.++.++..+. .....+|||+|+. |+.|+...|.+++..
T Consensus 56 ~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~---~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 56 EPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLA---LKGKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp SCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHH---TTSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHh---hcCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 358 999999988875 67899999999999984444443333 2446899999987 788999999999864
Q ss_pred C----ceEEEecchhhHHH--HHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccc-
Q 000101 1076 V----SCIYYVGAKDQRSR--LFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR- 1148 (2239)
Q Consensus 1076 l----kvvvy~Gskd~Rk~--l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lk- 1148 (2239)
+ .+..++|......+ ....+.. ++|+|+|++.|......|. ++++|||||||++.+....+...+..+.
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~lgf 203 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLGF 203 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTTE
T ss_pred CCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHhCc
Confidence 4 66777776543322 2222332 8999999999988765544 7889999999999775444444443331
Q ss_pred -----------cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000101 1149 -----------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1217 (2239)
Q Consensus 1149 -----------a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~ 1217 (2239)
....+++|||.-.. .++. ..|..
T Consensus 204 ~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~------------------------------ 237 (1054)
T 1gku_B 204 HYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFR------------------------------ 237 (1054)
T ss_dssp EEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHH------------------------------
T ss_pred chhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhh------------------------------
Confidence 12357777775222 0000 00000
Q ss_pred HHHHhhhhHHhhHhHhhhh-cCC-CCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHH
Q 000101 1218 RLHQILEPFMLRRRVEDVE-GSL-PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNN 1295 (2239)
Q Consensus 1218 RLhklLrPFmLRRlKkDVe-kdL-P~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~n 1295 (2239)
..+ .+ .+. ... +..... .++
T Consensus 238 ---~~~---~i-----~v~~~~~~~~~i~~-~~~---------------------------------------------- 259 (1054)
T 1gku_B 238 ---QLL---NF-----DIGSSRITVRNVED-VAV---------------------------------------------- 259 (1054)
T ss_dssp ---HHH---CC-----CCSCCEECCCCEEE-EEE----------------------------------------------
T ss_pred ---cce---EE-----EccCcccCcCCceE-EEe----------------------------------------------
Confidence 000 00 000 000 000000 000
Q ss_pred HHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecC
Q 000101 1296 RCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 1375 (2239)
Q Consensus 1296 iImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDG 1375 (2239)
...|...|..++.. .+.++||||.....++.|..+|... +.+..+||
T Consensus 260 -----------------------------~~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg 306 (1054)
T 1gku_B 260 -----------------------------NDESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTA 306 (1054)
T ss_dssp -----------------------------SCCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTT
T ss_pred -----------------------------chhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEec
Confidence 01122223333332 2678999999999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCccEEEEe----ccccccccCCCcC-ceEEEcCCC
Q 000101 1376 TTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQSA-DTVIIYDPD 1424 (2239)
Q Consensus 1376 sts~eeRqeiL~~FNs~ds~~~VfLLS----TrAGGeGLNLqaA-DtVIifDpp 1424 (2239)
++ ..+++.|+.+..+ +||+ |+++++|||++++ ++||+||.|
T Consensus 307 ~~-----~~~l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 307 TK-----KGDYEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp SS-----SHHHHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred cH-----HHHHHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 97 3788999975444 5666 9999999999996 999999999
No 58
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=200.16 Aligned_cols=111 Identities=23% Similarity=0.407 Sum_probs=103.6
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhcc--CCCCCHHHHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR--LEYNGVMELVSDV 2009 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~--~eY~~v~ef~~D~ 2009 (2239)
..|++..+++|..||.+|.. |.++..|+. |...++||||++ |++||||.+|++||+. ++|.++++|+.||
T Consensus 15 ~~m~p~~~~~c~~il~~L~~------~~~s~~F~~-Pv~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv 86 (135)
T 2yyn_A 15 VKLTPIDKRKCERLLLFLYC------HEMSLAFQD-PVPLTVPDYYKI-IKNPMDLSTIKKRLQEDYSMYSKPEDFVADF 86 (135)
T ss_dssp -CCCHHHHHHHHHHHHHHHT------SGGGGGGSS-CCCTTSTTHHHH-CSSCCCHHHHHHHHHSSSCCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh------CccchhhcC-CCcccCCCHHHH-cCCCCCHHHHHHHHhccccCCCCHHHHHHHH
Confidence 37899999999999999964 568999999 555599999999 9999999999999998 5999999999999
Q ss_pred HHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCCch
Q 000101 2010 QFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDF 2050 (2239)
Q Consensus 2010 qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~df 2050 (2239)
+|||+||+.||+++|.||.+|..|+++|..+|+..||+.+|
T Consensus 87 ~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 127 (135)
T 2yyn_A 87 RLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRF 127 (135)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999999999999987
No 59
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.81 E-value=4.3e-20 Score=196.64 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2013 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~ 2013 (2239)
.+..+|+.+++|+..|..++|++||.+|+.|+.+|+|+ |+||. ++||||.+|.+||+++.|.++++|..||.|||
T Consensus 4 v~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~---k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf 78 (147)
T 3iu6_A 4 VTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN---KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVL 78 (147)
T ss_dssp CCCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT---SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC---CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34578889999999999999999999999999999999 89997 79999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000101 2014 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 2047 (2239)
Q Consensus 2014 ~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~ 2047 (2239)
+||+.||+++|+||+||..|+++|..++...+++
T Consensus 79 ~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 79 ERARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998874
No 60
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.81 E-value=4.9e-20 Score=190.57 Aligned_cols=113 Identities=11% Similarity=0.136 Sum_probs=103.7
Q ss_pred CccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHH
Q 000101 1927 SSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2006 (2239)
Q Consensus 1927 s~~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2006 (2239)
|.++..+.+....++|..||+.|... ..+..|+.+++..++||||++ |++||||.+|..||+.+.|.++++|.
T Consensus 3 s~~k~~~~~~~~~~~c~~il~~l~~~------~~s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y~~~~~f~ 75 (117)
T 3g0l_A 3 SVKKPKRDDSKDLALCSMILTEMETH------EDAWPFLLPVNLKLVPGYKKV-IKKPMDFSTIREKLSSGQYPNLETFA 75 (117)
T ss_dssp TCCCCCCCCTTHHHHHHHHHHHHHTS------TTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHH
T ss_pred CCcCCCcCCHHHHHHHHHHHHHHHhC------CCchhhcCcCChhhcCChHHH-cCCCCCHHHHHHHHhCCCCCCHHHHH
Confidence 34455566777778999999999654 468999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2007 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2007 ~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
.||.|||.||+.||+++|++|.+|..|+++|..+|+..|=
T Consensus 76 ~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 76 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999998874
No 61
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.80 E-value=8.8e-18 Score=218.67 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=103.4
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..|..+|..+...+.+|||||......+.|...|...|+++..|||.+...+|..+...|+. +. |||+|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeCC
Confidence 3468888888888877788999999999999999999999999999999999887777655555543 23 799999
Q ss_pred ccccccCCC--------cCceEEEcCCCCCcchHHHhhhhhcccCCcceEEE
Q 000101 1405 AAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1405 AGGeGLNLq--------aADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~V 1448 (2239)
++|+|+|+. ...+||+||.|-++..|.|++||++|.|.......
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~ 540 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQF 540 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEE
Confidence 999999999 78899999999999999999999999998765543
No 62
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.80 E-value=1.1e-19 Score=186.67 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=97.9
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
++.+++.|+.|+++|..+ ..+..|+.++++.++||||++ |++||||.+|+.||++++|.++.+|..||+|||.
T Consensus 5 ~~~l~~~~~~il~~l~~~------~~~~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~ 77 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSH------PSAWPFMEPVKKSEAPDYYEV-IRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIA 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHS------GGGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC------CCchhhcCCCCcccccCHHHH-ccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 578899999999999764 479999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||+.||+++|.+|.+|..|+++|..+|+..
T Consensus 78 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 78 NCREYNPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999863
No 63
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.80 E-value=5e-20 Score=192.19 Aligned_cols=110 Identities=15% Similarity=0.253 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
++.++++|..||+.|.... .+..|+.+|++.++||||++ |++||||.+|..||+.+.|.++.+|+.||.|||.
T Consensus 8 ~~~~~~~c~~il~~l~~~~------~s~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 80 (123)
T 3q2e_A 8 ESNWKKQCKELVNLIFQCE------DSEPFRQPVDLVEYPDYRDI-IDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFS 80 (123)
T ss_dssp --CHHHHHHHHHHHHHTSG------GGGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC------CcHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4678899999999997664 48999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCC-CcHHHHHHHHHHHHHHHHHHHhCCCCchHHh
Q 000101 2015 GAMQFYGF-SHEVRSEARKVHDLFFDLLKIAFPDTDFREA 2053 (2239)
Q Consensus 2015 Na~~yn~~-~sev~~dA~~L~~~f~~~~k~~fP~~df~~a 2053 (2239)
||+.||++ +|.||.+|..|+++|..+++..+| +|.+|
T Consensus 81 Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~--~~~~~ 118 (123)
T 3q2e_A 81 NAKAYTPNKRSKIYSMTLRLSALFEEKMKKISS--DFKIG 118 (123)
T ss_dssp HHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHH--HHC--
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 99999996 999999999999999999999997 44443
No 64
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=192.55 Aligned_cols=113 Identities=14% Similarity=0.266 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
+.++++|..||+.|.... .+..|+.+++..++||||++ |++||||.+|..||+.+.|.++.+|+.||.|||.|
T Consensus 20 ~~l~~~~~~il~~l~~~~------~s~~F~~pv~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCE------DSEPFRQPVDLLEYPDYRDI-IDTPMDFATVRETLEAGNYESPMELCKDVRLIFSN 92 (135)
T ss_dssp STHHHHHHHHHHHHHHSG------GGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC------CChhhcCCCChhhCCCHHHH-hCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 567889999999998764 38999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCC-CcHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhccccc
Q 000101 2016 AMQFYGF-SHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFT 2060 (2239)
Q Consensus 2016 a~~yn~~-~sev~~dA~~L~~~f~~~~k~~fP~~df~~a~~a~~~~ 2060 (2239)
|+.||++ +|.||.+|..|+++|...++..|| +-+.|+.++
T Consensus 93 a~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~-----~~~~~~r~~ 133 (135)
T 3mb3_A 93 SKAYTPSKRSRIYSMSLRLSAFFEEHISSVLS-----DYKSALRFH 133 (135)
T ss_dssp HHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHTCC-
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhc
Confidence 9999998 999999999999999999999987 445555443
No 65
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.78 E-value=6e-19 Score=217.65 Aligned_cols=97 Identities=20% Similarity=0.117 Sum_probs=85.5
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCce----
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT---- 1417 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADt---- 1417 (2239)
.+.++||||.....++.+.+.|...++.+..+||. +|.++++.|.++... +|++|+++++|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 36689999999999999999999999999999997 588899999986555 799999999999999 555
Q ss_pred -------------EEEcCCCCCcchHHHhhhhhcccCCcceE
Q 000101 1418 -------------VIIYDPDPNPKNEEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1418 -------------VIifDppWNP~~dlQAiGRAhRIGQkKeV 1446 (2239)
||++|.+.+...+.|+.||++|.|....+
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~ 283 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGD 283 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCe
Confidence 57889999999999999999999965433
No 66
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.78 E-value=2.7e-19 Score=221.80 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=86.5
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEc
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1421 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIif 1421 (2239)
.+.++||||+....++.|...|...|+.+..|||.+. .++++.|+++... +|++|+++++|||++. ++||+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 3668999999999999999999999999999999764 5789999875444 7999999999999999 999999
Q ss_pred C--------------------CCCCcchHHHhhhhhcccCC-cceE
Q 000101 1422 D--------------------PDPNPKNEEQAVARAHRIGQ-KREV 1446 (2239)
Q Consensus 1422 D--------------------ppWNP~~dlQAiGRAhRIGQ-kKeV 1446 (2239)
| .|.++..|.|++||++|.|. ...+
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~ 304 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQ 304 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccE
Confidence 9 89999999999999999997 3444
No 67
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.78 E-value=3.5e-19 Score=186.97 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=101.0
Q ss_pred cccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcc--cccCCCccccccCCccChHHHHHhhccCCCCCHHHHH
Q 000101 1929 NFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2006 (2239)
Q Consensus 1929 ~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~--R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2006 (2239)
....+++..++..|+.||+.|.. +..+..|+..++ +.++||||++ |++||||.+|.+||+.++|.++.+|+
T Consensus 13 ~~~~r~~~~l~~~~~~il~~L~~------~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~ 85 (127)
T 2oss_A 13 NKPKRQTNQLQYLLRVVLKTLWK------HQFAWPFQQPVDAVKLNLPDYYKI-IKTPMDMGTIKKRLENNYYWNAQECI 85 (127)
T ss_dssp TSCCCCCHHHHHHHHTHHHHHHT------STTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHHHHh------CccchhhcCCCChhhccCccHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 34568899999999999999965 457899999966 6799999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000101 2007 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2045 (2239)
Q Consensus 2007 ~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~f 2045 (2239)
.||.|||+||+.||+++|.+|.+|..|+++|..+|+..-
T Consensus 86 ~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 86 QDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999987643
No 68
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.77 E-value=8.4e-17 Score=209.16 Aligned_cols=120 Identities=12% Similarity=0.113 Sum_probs=105.3
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..|.+++..+...+..|||||......+.|...|...|+++..|+|.....+|..+...|+. +. |+|+|+
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~--G~---VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP--AA---VTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST--TC---EEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEecc
Confidence 3568999998888887789999999999999999999999999999999999887777777777774 23 899999
Q ss_pred ccccccCCCcC-------------------------------------ceEEEcCCCCCcchHHHhhhhhcccCCcceEE
Q 000101 1405 AAGRGLNLQSA-------------------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1447 (2239)
Q Consensus 1405 AGGeGLNLqaA-------------------------------------DtVIifDppWNP~~dlQAiGRAhRIGQkKeV~ 1447 (2239)
.+|+|+|+... .+||.||.|-++..|.|++||++|.|......
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~ 577 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 577 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEE
Confidence 99999999863 69999999999999999999999999776554
Q ss_pred EE
Q 000101 1448 VI 1449 (2239)
Q Consensus 1448 Vy 1449 (2239)
.|
T Consensus 578 ~f 579 (853)
T 2fsf_A 578 FY 579 (853)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 69
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4e-19 Score=185.12 Aligned_cols=102 Identities=11% Similarity=0.171 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
.-++..|+.||++|..+ ..+..|+.+++..++||||++ |++||||.+|..||++++|.++.+|..||+|||.|
T Consensus 6 ~pl~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 78 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEK------DTGNIFSEPVPLSEVPDYLDH-IKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSN 78 (121)
T ss_dssp CHHHHHHHHHHHHHHHH------CSSCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcC------CccHhhCCcCCccccCCHHHH-cCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34567999999999875 367899999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2016 a~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
|+.||+++|.+|.+|..|+++|..+|+.+
T Consensus 79 a~~yN~~~s~~~~~A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 79 CLKYNAKDTIFYRAAVRLREQGGAVLRQA 107 (121)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
No 70
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.77 E-value=3.3e-19 Score=185.18 Aligned_cols=107 Identities=20% Similarity=0.292 Sum_probs=97.9
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhccccc--CCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHH
Q 000101 1933 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIE--TSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQ 2010 (2239)
Q Consensus 1933 kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~--~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~q 2010 (2239)
++++.++ +|..||.+|. ...++.++..|+.+++... +||||++ |++||||.+|..||+.+.|.++.+|..||.
T Consensus 6 ~~~~~l~-~c~~il~~l~---~~~~~~~a~~F~~pvd~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~ 80 (120)
T 3jvl_A 6 KISEQLK-CCSGILKEMF---AKKHAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLESREYRDAQEFGADVR 80 (120)
T ss_dssp SSCHHHH-HHHHHHHHHT---SGGGHHHHGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred hhHHHHH-HHHHHHHHHH---hCcCccccchhcCCCCchhcCCCCHHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHH
Confidence 5556555 9999999994 4556678999999998888 9999999 999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2011 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2011 LM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
|||.||+.||+++|.||.+|..|+++|..+++..
T Consensus 81 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 81 LMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999998764
No 71
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.77 E-value=6.8e-19 Score=217.76 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=81.0
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE-
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1420 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi- 1420 (2239)
.+.++||||.....++.+.+.|...++.+..+|| ++|.++++.|+++... ||++|+++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 4789999999999999999999999999999999 4688999999975554 799999999999999 999996
Q ss_pred ------------------cCCCCCcchHHHhhhhhcccC-CcceEEEE
Q 000101 1421 ------------------YDPDPNPKNEEQAVARAHRIG-QKREVKVI 1449 (2239)
Q Consensus 1421 ------------------fDppWNP~~dlQAiGRAhRIG-QkKeV~Vy 1449 (2239)
||.|.++..|.|++||++|.| ....+.++
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 899999999999999999985 44455444
No 72
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.77 E-value=6.6e-19 Score=182.55 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
..+++.|+.||++|.+. ..+..|..++++.++||||++ |++||||.+|..||++++|.++.+|..||.|||+|
T Consensus 7 ~~l~~~l~~il~~L~~~------~~~~~F~~PVd~~~~pdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~N 79 (117)
T 2i7k_A 7 TPLQEALNQLMRQLQRK------DPSAFFSFPVTDFIAPGYSMI-IKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTN 79 (117)
T ss_dssp HHHHHHHHHHHHHHHTS------SGGGTSSSCCCTTTSSSHHHH-CSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC------cccHHhcCCCCccccCCHHHH-hCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 35678999999999764 357889999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q 000101 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDT 2048 (2239)
Q Consensus 2016 a~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~ 2048 (2239)
|+.||+++|.+|.+|..|++.|..+++..+=++
T Consensus 80 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 112 (117)
T 2i7k_A 80 AMIYNKPETIYYKAAKKLLHSGMKILSQERLEH 112 (117)
T ss_dssp HHHTSCSSSSHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999876543
No 73
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.77 E-value=4.5e-19 Score=186.85 Aligned_cols=111 Identities=19% Similarity=0.285 Sum_probs=96.7
Q ss_pred cccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcc--cccCCCccccccCCccChHHHHHhhccCCCCCHHHHH
Q 000101 1929 NFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2006 (2239)
Q Consensus 1929 ~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~--R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2006 (2239)
....++++.++ +|..||+.|.... .+.++..|+.+++ +.++||||++ |++||||.+|..||+.+.|.++.+|.
T Consensus 15 ~k~~~~~~~l~-~c~~il~~L~~~~---~~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~ 89 (130)
T 2ouo_A 15 EKSSKVSEQLK-CCSGILKEMFAKK---HAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLEAREYRDAQEFG 89 (130)
T ss_dssp ----CHHHHHH-HHHHHHHHHTSGG---GHHHHGGGSSCCCTTSTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred CCCcccHHHHH-HHHHHHHHHHhCC---cchhHHHhcCCCChhhccCCcHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 34457777775 8999999996553 2458899999855 4579999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2007 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2007 ~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
.||.|||.||+.||+++|.||.+|..|+++|..+|+..
T Consensus 90 ~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 90 ADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999998754
No 74
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.77 E-value=5.5e-19 Score=184.05 Aligned_cols=98 Identities=14% Similarity=0.259 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000101 1940 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2019 (2239)
Q Consensus 1940 ~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~y 2019 (2239)
+.|..||++|.. +..+..|+.+|++.++||||++ |++||||.+|..||+.++|.++.+|..||.|||.||+.|
T Consensus 16 ~~~~~il~~l~~------~~~a~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 88 (121)
T 1e6i_A 16 AAIQNILTELQN------HAAAWPFLQPVNKEEVPDYYDF-IKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMY 88 (121)
T ss_dssp HHHHHHHHHHHH------STTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------CCCchhhCCCCChhhCcCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999965 4688999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2020 YGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2020 n~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
|+++|.+|.+|..|+++|..+++..
T Consensus 89 N~~~s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 89 NGENTSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999864
No 75
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.76 E-value=7.6e-19 Score=190.00 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=101.3
Q ss_pred ccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccc--cCCCccccccCCccChHHHHHhhccCCCCCHHHHHH
Q 000101 1930 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2007 (2239)
Q Consensus 1930 ~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~--~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2007 (2239)
...+++..++..|+.||+.|... ..+..|+.+++.. ++||||++ |++||||.+|..||+.+.|.++.+|+.
T Consensus 25 ~~~r~t~~l~~~~~~il~~l~~~------~~a~~F~~PVd~~~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~ 97 (154)
T 4alg_A 25 KPGRVTNQLQYLHKVVMKALWKH------QFAWPFRQPVDAVKLGLPDYHKI-IKQPMDMGTIKRRLENNYYWAASECMQ 97 (154)
T ss_dssp -CCCCBHHHHHHHHTHHHHHHTS------TTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhC------cCchhhcCCCChhhccCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHH
Confidence 34589999999999999999664 5799999997766 89999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2008 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2008 D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
||.|||.||+.||+++|.||.+|..|+++|..+++..-+
T Consensus 98 Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~ 136 (154)
T 4alg_A 98 DFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQ 136 (154)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCc
Confidence 999999999999999999999999999999999987544
No 76
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.76 E-value=7.8e-19 Score=181.38 Aligned_cols=100 Identities=12% Similarity=0.135 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
..++|..||..|....+ +..|+.+++..++||||++ |++||||.+|..||+.+.|.++++|+.||.|||.||+
T Consensus 17 ~~~~~~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 89 (116)
T 3nxb_A 17 DFTAMYKVLDVVKAHKD------SWPFLEPVDESYAPNYYQI-IKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCR 89 (116)
T ss_dssp HHHHHHHHHHHHHHSTT------CGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC------cHhhcCcCChhhccChHHH-cCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 34589999999976643 6899999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
.||+++|.+|.+|..|+++|...|.++
T Consensus 90 ~yN~~~s~~~~~A~~L~~~f~~~~~kh 116 (116)
T 3nxb_A 90 KYNGESSEYTKMSDNLERCFHRAMMKH 116 (116)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999998753
No 77
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.76 E-value=1.4e-18 Score=216.04 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=85.2
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE-
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1420 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi- 1420 (2239)
.+.++||||.....++.|...|...|+.+..|||. +|.++++.|+++... |||+|+++++|||+++ ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 36799999999999999999999999999999995 688899999875444 7999999999999999 99998
Q ss_pred -------------------cCCCCCcchHHHhhhhhcccCC-cceEEEE
Q 000101 1421 -------------------YDPDPNPKNEEQAVARAHRIGQ-KREVKVI 1449 (2239)
Q Consensus 1421 -------------------fDppWNP~~dlQAiGRAhRIGQ-kKeV~Vy 1449 (2239)
||.|.++..|.|++||++|.|. ...+.+|
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~ 309 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHY 309 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEE
Confidence 8899999999999999999996 4444333
No 78
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.75 E-value=1.8e-18 Score=200.74 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=124.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC--
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS-- 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPs-- 1075 (2239)
.+|+|||.+++.+++. +.++||+++||+|||+++++++..++.. ..+++|||||+ .|+.||.++|.+|...
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHH--CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999999887 3568999999999999998888776652 23589999997 5889999999999743
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-ccceEEE
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLL 1154 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~rRLL 1154 (2239)
..+..+.++..... ......+|+|+||+.+.+....+ ..+|++|||||||++.+. .....+..+ .+.++|+
T Consensus 186 ~~~~~~~~~~~~~~-----~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 186 AMIKKIGGGASKDD-----KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFG 257 (282)
T ss_dssp GGEEECSTTCSSTT-----CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEE
T ss_pred ceEEEEeCCCcchh-----hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEE
Confidence 34445444432211 12246799999999997764322 347899999999999854 555666777 5788999
Q ss_pred ecCCCCCCCHHHHHHHHhhhcC
Q 000101 1155 LTGTPLQNDLKELWSLLNLLLP 1176 (2239)
Q Consensus 1155 LTGTPIQNnL~ELwsLLnFLlP 1176 (2239)
|||||.. ...+++.++.++.|
T Consensus 258 lSATp~~-~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 258 LSGSLRD-GKANIMQYVGMFGE 278 (282)
T ss_dssp ECSSCCT-TSTTHHHHHHHHCE
T ss_pred EeCCCCC-cchHHHHHHHhcCC
Confidence 9999964 45788888887765
No 79
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.75 E-value=1e-16 Score=208.54 Aligned_cols=399 Identities=15% Similarity=0.184 Sum_probs=219.5
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HH---HHHHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VL---VNWKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LL---sQW~~Ef~Kwa 1073 (2239)
+...+|.|+.|+--++. |.|....||.|||++++..+.... .. ...++||||+. |. .+|...|.+|+
T Consensus 109 G~rP~~VQ~~~ip~Ll~------G~Iaem~TGeGKTLa~~LP~~l~a-L~--g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 109 DQRPFDVQVMGAAALHL------GNVAEMKTGEGKTLTCVLPAYLNA-LA--GNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp SCCCCHHHHHHHHHHHT------TEEEECCTTSCHHHHTHHHHHHHH-TT--TSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhHhc------CCEEEecCCCccHHHHHHHHHHHH-Hh--CCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 33567788888876653 338889999999998766553221 12 24799999988 44 34888888887
Q ss_pred CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHH----Hhh-----hhcccCCceEEEecccccccChhhHHHHHh
Q 000101 1074 PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIM----YDR-----SKLSKVDWKYIIIDEAQRMKDRESVLARDL 1144 (2239)
Q Consensus 1074 Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~----kD~-----s~L~kikWd~VIIDEAHrIKN~~SKlskaL 1144 (2239)
++.+.++.|+.....+. .....+|+++|++.|. ++. ..+....+.++||||||+|....
T Consensus 180 -GLsv~~i~gg~~~~~r~----~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDe------- 247 (922)
T 1nkt_A 180 -GLQVGVILATMTPDERR----VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDE------- 247 (922)
T ss_dssp -TCCEEECCTTCCHHHHH----HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTG-------
T ss_pred -CCeEEEEeCCCCHHHHH----HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhc-------
Confidence 57776666654322111 1124799999999883 221 23444578999999999875211
Q ss_pred hccccceEEEecCCCCCCCHHHHH----HHHhhhcCcc-c----------CC---hHHHHhhhcCCcccCCCCCCCChhh
Q 000101 1145 DRYRCQRRLLLTGTPLQNDLKELW----SLLNLLLPEV-F----------DN---RKAFHDWFSQPFQKEGPTHNADDDW 1206 (2239)
Q Consensus 1145 k~Lka~rRLLLTGTPIQNnL~ELw----sLLnFLlP~i-F----------~s---~k~F~e~F~kPf~~~g~~~~~e~d~ 1206 (2239)
-+ .-|++||. .... .++| .++..|.++. | -+ .....+.|.. .+. ......
T Consensus 248 --ar--tPLiiSg~-~~~~-~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i--~~L--fsat~~-- 315 (922)
T 1nkt_A 248 --AR--TPLIISGP-ADGA-SNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGI--DNL--YEAANS-- 315 (922)
T ss_dssp --GG--SCEEEEEE-CCCC-HHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTC--SST--TCSTTC--
T ss_pred --Cc--cceeecCC-CCcc-hhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCC--ccc--cCCcch--
Confidence 11 12677773 3333 3343 3333332110 0 00 0001111110 000 000000
Q ss_pred HHHHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccCH-------HHHHHHHHHHHhcCcccCchhHHhh
Q 000101 1207 LETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMSA-------IQSAIYDWIKATGTLRVDPEDEKRR 1278 (2239)
Q Consensus 1207 l~~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS~-------~Qr~LY~~I~~~~~l~l~~~~ek~~ 1278 (2239)
...+.+...|+.. ++.+-+..+.. +. +.++--+++. +..-+.+.+.....+.+.... ..
T Consensus 316 -------~l~~~i~~aL~A~~l~~~d~dYiV~---dg-~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~--~T 382 (922)
T 1nkt_A 316 -------PLVSYLNNALKAKELFSRDKDYIVR---DG-EVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAEN--QT 382 (922)
T ss_dssp -------CHHHHHHHHHHHHHHCCBTTTEEEC---SS-CEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCE--EE
T ss_pred -------hHHHHHHHHHHHHHHhhcccceeee---cC-ceEEEecccCcccCCccccchhhHHHhccccccccccc--cc
Confidence 0112222222221 11222211111 11 1111111111 011122222222122221110 00
Q ss_pred hhcChhhHHHHH----------HHHHHHHHHHHHHcCCCCCCCCCccccch-----hhHhhcccHHHHHHHHHHHHHhcC
Q 000101 1279 VQKNPIYQAKVY----------KTLNNRCMELRKTCNHPLLNYPYFSDLSK-----DFLVKSCGKLWILDRILIKLQRTG 1343 (2239)
Q Consensus 1279 l~k~~~~~~k~~----------ksL~niImqLRKiCnHP~L~~p~~~~~s~-----d~Li~~SGKLelLdrIL~kLkatG 1343 (2239)
+... .++ ..+ ..+......++++.+-..+..|....... -.......|+..|...+..+...+
T Consensus 383 latI-t~Q-nyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~g 460 (922)
T 1nkt_A 383 LATI-TLQ-NYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKG 460 (922)
T ss_dssp EEEE-CHH-HHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred ccee-ehH-HHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcC
Confidence 0000 000 000 00001123455554433333222111100 011233468888888888887889
Q ss_pred CeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcC--------
Q 000101 1344 HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA-------- 1415 (2239)
Q Consensus 1344 hKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA-------- 1415 (2239)
..|||||......+.|...|...|+++..|+|.....++..+...|+. +. |+|+|+.+|+|+|+...
T Consensus 461 qpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~--G~---VtIATnmAgRGtDI~l~~~~~~~~~ 535 (922)
T 1nkt_A 461 QPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--GG---VTVATNMAGRGTDIVLGGNVDFLTD 535 (922)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--TC---EEEEETTCSTTCCCCTTCCHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEecchhhcCccccCCCCHHHHHH
Confidence 999999999999999999999999999999999876666666666664 23 79999999999999964
Q ss_pred --------------------------------------------ceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1416 --------------------------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1416 --------------------------------------------DtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
.+||.||.|-++..|.|++||++|.|.......|
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~ff 613 (922)
T 1nkt_A 536 QRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFY 613 (922)
T ss_dssp HHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEE
T ss_pred HHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEE
Confidence 4999999999999999999999999977655443
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.75 E-value=2e-18 Score=194.71 Aligned_cols=113 Identities=20% Similarity=0.310 Sum_probs=104.1
Q ss_pred ccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhcc---CCCCCHHHHH
Q 000101 1930 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR---LEYNGVMELV 2006 (2239)
Q Consensus 1930 ~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~---~eY~~v~ef~ 2006 (2239)
....|++..+++|+.||..|..+ .++..|+... ..++||||++ |++||||.+|.+||+. +.|.++.+|+
T Consensus 74 ~~~~ls~~~~~~c~~il~~l~~~------~~s~~F~~Pv-~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~~~~Y~s~~~f~ 145 (207)
T 3u5n_A 74 TAQGLSPVDQRKCERLLLYLYCH------ELSIEFQEPV-PASIPNYYKI-IKKPMDLSTVKKKLQKKHSQHYQIPDDFV 145 (207)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHTS------TTCGGGSSCC-CTTSTTHHHH-CSSCCCHHHHHHHHSTTSTTCCSSHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHhc------cchhhhhccC-ChhhccHhHH-hCCccCHHHHHHHHhcccCCCcCCHHHHH
Confidence 34579999999999999999754 4678898854 4599999999 9999999999999997 7999999999
Q ss_pred HHHHHHHHhhhhhcC-----------------CCcHHHHHHHHHHHHHHHHHHHhCCCCch
Q 000101 2007 SDVQFMLKGAMQFYG-----------------FSHEVRSEARKVHDLFFDLLKIAFPDTDF 2050 (2239)
Q Consensus 2007 ~D~qLM~~Na~~yn~-----------------~~sev~~dA~~L~~~f~~~~k~~fP~~df 2050 (2239)
.||.|||.||+.||+ ++|+|+++|..|+.+|..+|+..|||..|
T Consensus 146 ~Dv~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~~f 206 (207)
T 3u5n_A 146 ADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDRTF 206 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999 99999999999999999999999999988
No 81
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=183.89 Aligned_cols=106 Identities=14% Similarity=0.243 Sum_probs=98.3
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHH
Q 000101 1933 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2012 (2239)
Q Consensus 1933 kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM 2012 (2239)
++.+ ++..|+.||++|..+ ..+..|+.+++..++||||++ |++||||.+|..||+.+.|.++.+|..||.||
T Consensus 10 ~~~~-l~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li 81 (135)
T 3rcw_A 10 RLTP-LTVLLRSVLDQLQDK------DPARIFAQPVSLKEVPDYLDH-IKHPMDFATMRKRLEAQGYKNLHEFEEDFDLI 81 (135)
T ss_dssp CCCH-HHHHHHHHHHHHHHT------CTTCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred cchH-HHHHHHHHHHHHHhC------CcchhhcCCCChhhcCCHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4444 777999999999774 468899999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2013 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2013 ~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
|.||+.||+++|.+|.+|..|+++|..+++.+--
T Consensus 82 ~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~ 115 (135)
T 3rcw_A 82 IDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARR 115 (135)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998744
No 82
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.74 E-value=7e-18 Score=218.79 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=87.9
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE-
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1420 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi- 1420 (2239)
.+.++||||.....++.+...|...++.+..|||. +|.++++.|.++... |||+|+++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEEC
Confidence 57899999999999999999999999999999993 799999999975544 799999999999999 999997
Q ss_pred -------------------cCCCCCcchHHHhhhhhccc-CCcceEEEE
Q 000101 1421 -------------------YDPDPNPKNEEQAVARAHRI-GQKREVKVI 1449 (2239)
Q Consensus 1421 -------------------fDppWNP~~dlQAiGRAhRI-GQkKeV~Vy 1449 (2239)
||.|.++..|.|++||++|. |+...+.+|
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 67888899999999999999 555454444
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.74 E-value=4.3e-18 Score=188.63 Aligned_cols=107 Identities=21% Similarity=0.367 Sum_probs=99.4
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhcc--CCCCCHHHHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR--LEYNGVMELVSDV 2009 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~--~eY~~v~ef~~D~ 2009 (2239)
..|++..+++|+.||.+|.... ....|.... ..++||||++ |++||||.+|++||+. +.|.++++|+.||
T Consensus 76 ~~l~~~~~~~c~~il~~l~~~~------~s~~F~~Pv-~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv 147 (184)
T 3o36_A 76 VKLTPIDKRKCERLLLFLYCHE------MSLAFQDPV-PLTVPDYYKI-IKNPMDLSTIKKRLQEDYSMYSKPEDFVADF 147 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHST------TCHHHHSCC-CTTSTTHHHH-CSSCCCHHHHHHHHHSTTCSCCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhch------hhhhhcccc-ccCCCchhhh-cCCCCCHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 4789999999999999997753 577888754 4679999999 9999999999999998 7999999999999
Q ss_pred HHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2010 QFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2010 qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
.|||.||+.||+++|+||.+|..|+++|..+|+..||
T Consensus 148 ~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 148 RLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999998
No 84
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=179.75 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
++..|..|+..|... ..+..|..+++..++||||++ |++||||.+|..||+.++|.++.+|..||.|||.||+
T Consensus 14 ~~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (123)
T 3hme_A 14 IQQLLEHFLRQLQRK------DPHGFFAFPVTDAIAPGYSMI-IKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAM 86 (123)
T ss_dssp HHHHHHHHHHHHHTT------CTTCSSSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC------CccHhhcCCCChhhccCHHHH-CCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 466999999999764 345689999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
.||+++|.+|.+|..|++.|...|..
T Consensus 87 ~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 87 TYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 85
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.74 E-value=3.3e-18 Score=177.48 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=97.5
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccc--cCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2012 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~--~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM 2012 (2239)
++.+.+.|..+|.+|.+ .+..+..|..++... ++||||++ |++||||.+|..||+.+.|.++.+|..||.||
T Consensus 9 ~~el~~~l~~~l~~l~~-----~~~~s~~F~~pv~~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li 82 (119)
T 3p1f_A 9 PEELRQALMPTLEALYR-----QDPESLPFRQPVDPQLLGIPDYFDI-VKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLM 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHT-----CTTTTGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----hCCCCchhcCCCCchhccCCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 46788899999999855 346788999987766 89999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2013 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2013 ~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
|+||+.||+++|.+|.+|..|+++|...++..|.
T Consensus 83 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 83 FNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 86
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.73 E-value=1.9e-17 Score=213.15 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=84.7
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE---
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV--- 1418 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV--- 1418 (2239)
.+.++||||.....++.|...|...++.+..|||. +|.++++.|+++... +|++|+++++|||++ +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEEC
Confidence 46799999999999999999999999999999994 788899999975544 799999999999997 9988
Q ss_pred -----------------EEcCCCCCcchHHHhhhhhcccCCcc
Q 000101 1419 -----------------IIYDPDPNPKNEEQAVARAHRIGQKR 1444 (2239)
Q Consensus 1419 -----------------IifDppWNP~~dlQAiGRAhRIGQkK 1444 (2239)
|+||.|-++..|+||+||++|.|..+
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~ 468 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 468 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCC
Confidence 67777888889999999999998643
No 87
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.73 E-value=6.1e-18 Score=184.98 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=96.9
Q ss_pred ccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHH
Q 000101 1930 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2007 (2239)
Q Consensus 1930 ~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2007 (2239)
.+..+...+.+.|..||.+|... ..+..|..+ |++.++||||++ |++||||.+|..||+.+.|.++.+|+.
T Consensus 14 ~~~p~~~~~~~~~~~il~~L~~~------~~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~ 86 (166)
T 3fkm_X 14 LYFQGNKQWYLLANQLILSLSKY------EGGHIFEKLVDAKKQNCPDYYDV-IKNPMSFSCIKTKLKKGQYAYPSEFVK 86 (166)
T ss_dssp ---CTTHHHHHHHHHHHHHHTTS------TTGGGGSSCCC-----CCCGGGC-CSSCCCHHHHHHHHHHTCCCSHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHhC------CCChhhcCCCChhhccCCCHHHh-cCCCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 34577889999999999999653 467899999 668899999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCCchH
Q 000101 2008 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFR 2051 (2239)
Q Consensus 2008 D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~df~ 2051 (2239)
||.|||.||+.||+++|.||.+|..|+++|..+|+..- -.+|.
T Consensus 87 Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~-~~~~~ 129 (166)
T 3fkm_X 87 DVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMG-YNNFI 129 (166)
T ss_dssp HHHHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc-ccccc
Confidence 99999999999999999999999999999999998743 33444
No 88
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.72 E-value=6.8e-18 Score=185.21 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=98.9
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
..|++...++|+.||+.|.. +.++..|+.+++...+||||++ |++||||.+|.+||+++.|.++.+|+.||.|
T Consensus 67 ~~l~~~~~~~l~~il~~l~~------~~~~~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~l 139 (174)
T 2ri7_A 67 TPLTEKDYEGLKRVLRSLQA------HKMAWPFLEPVDPNDAPDYYGV-IKEPMDLATMEERVQRRYYEKLTEFVADMTK 139 (174)
T ss_dssp SBCCHHHHHHHHHHHHHHHT------SGGGTTTSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCBHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh------hhhhhhhhcCCCcccCCchHHH-hCCcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 36888888899999999965 4578899999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
||.||+.||+++|.+|++|..|+++|.++|+.
T Consensus 140 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 171 (174)
T 2ri7_A 140 IFDNCRYYNPSDSPFYQCAEVLESFFVQKLKG 171 (174)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875
No 89
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.71 E-value=4.8e-17 Score=175.00 Aligned_cols=122 Identities=20% Similarity=0.315 Sum_probs=110.3
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1403 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLST 1403 (2239)
....|+..|..+|... .+.++||||+....++.|...|...|+.+..+||+++..+|..+++.|+.+... +|++|
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T 92 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVAT 92 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEC
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEC
Confidence 3456999999998864 577999999999999999999999999999999999999999999999975443 78999
Q ss_pred cccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1404 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1404 rAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+++++|||++.+++||+||+|||+..|.|++||++|.|+...+.++.
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 139 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFV 139 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEE
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEe
Confidence 99999999999999999999999999999999999999887765543
No 90
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.71 E-value=9.4e-17 Score=211.27 Aligned_cols=109 Identities=15% Similarity=0.082 Sum_probs=91.5
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHH-----------cCCeEEeecCCCCHHHHHHHHHHHhcC--CCCccEEEEecccccc
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQW-----------RQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGR 1408 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~-----------rGiky~RLDGsts~eeRqeiL~~FNs~--ds~~~VfLLSTrAGGe 1408 (2239)
.+.++||||.....++.+...|.. .++.+..+||+++.++|.++++.|... .....-+||+|+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 467999999999999999998874 588899999999999999999999711 0123447999999999
Q ss_pred ccCCCcCceEEEcCC------------------CCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1409 GLNLQSADTVIIYDP------------------DPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1409 GLNLqaADtVIifDp------------------pWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|||++++++||.++. |.+...+.||.||++|. ++-.+|+|++
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~ 441 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYT 441 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSC
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEec
Confidence 999999999999777 88999999999999998 2334566654
No 91
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.71 E-value=9.1e-16 Score=215.32 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=100.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-C--C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-P--S 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa-P--s 1075 (2239)
.+.|.|.+++.-+ |+.+.|.+++..||+|||+++...|...+. ....+.+|+|+|.. |+.+-..+|.+.+ + +
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~-~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLL-QSSEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHH-hCCCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 5778999998655 456778999999999999998777766654 33456899999976 6667666765533 3 4
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcc----cCCceEEEecccccccChhhHH-HHHhhcc---
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKDRESVL-ARDLDRY--- 1147 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrIKN~~SKl-skaLk~L--- 1147 (2239)
+++..+.|......+. ..+.+|+|||++.+........ -.+..+|||||+|.+....... ...+..+
T Consensus 1002 ~~V~~ltGd~~~~~~~-----~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i 1076 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLKL-----LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYI 1076 (1724)
T ss_dssp CCEEECCSCHHHHHHH-----HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCcchhh-----cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHH
Confidence 6777777765433222 2357999999998743321111 1256899999999996533222 2222222
Q ss_pred ----c-cceEEEecCC
Q 000101 1148 ----R-CQRRLLLTGT 1158 (2239)
Q Consensus 1148 ----k-a~rRLLLTGT 1158 (2239)
. .-+.++||||
T Consensus 1077 ~~~~~~~~riI~lSAT 1092 (1724)
T 4f92_B 1077 SSQIERPIRIVALSSS 1092 (1724)
T ss_dssp HHTTSSCCEEEEEESC
T ss_pred HhhcCCCceEEEEeCC
Confidence 2 3357889999
No 92
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.71 E-value=1.9e-17 Score=179.78 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=98.6
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2013 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~ 2013 (2239)
|.+. +..|..+|..+...+ -.++..+..|+.++++..+||||++ |++||||.+|..||+.+.|.++.+|+.||.|||
T Consensus 23 ~~d~-~~~l~~iL~~i~~~k-l~~~~~s~~F~~PVd~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 99 (158)
T 3uv4_A 23 MDDD-QVAFSFILDNIVTQK-MMAVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLIL 99 (158)
T ss_dssp CSHH-HHHHHHHHHHHHHHT-TTTSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCch-HHHHHHHHHHHHHHH-HHcCCCchhhcCcCChhhcccHHHH-cCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455 557888888875442 4568889999999999999999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000101 2014 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2045 (2239)
Q Consensus 2014 ~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~f 2045 (2239)
.||+.||+++|.||.+|..|+++|.+.|+..-
T Consensus 100 ~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 100 ANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 93
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.71 E-value=5.2e-17 Score=176.74 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=110.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..|..+|... .+.++||||++...++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 456999999988864 567999999999999999999999999999999999999999999999975444 689999
Q ss_pred ccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++++|||++.+++||+||+|||+..|.|++||++|.|+...+.++.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 135 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 135 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEE
Confidence 9999999999999999999999999999999999999887765554
No 94
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.71 E-value=2.7e-17 Score=173.21 Aligned_cols=109 Identities=18% Similarity=0.275 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1937 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1937 ~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
.+...|+.+++.|... ..+..|+.+|+..++||||++ |++||||.+|..||+.+.|.++.+|..||.|||.||
T Consensus 10 ~l~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 82 (130)
T 3dai_A 10 ELRIFLRNVTHRLAID------KRFRVFTKPVDPDEVPDYVTV-IKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNA 82 (130)
T ss_dssp HHHHHHHHHHHHHHTS------GGGGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC------CccHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 4555688888777443 458999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHH----HHHHHHHHHHHHHHHHHhCCCCchHHh
Q 000101 2017 MQFYGFSHEV----RSEARKVHDLFFDLLKIAFPDTDFREA 2053 (2239)
Q Consensus 2017 ~~yn~~~sev----~~dA~~L~~~f~~~~k~~fP~~df~~a 2053 (2239)
+.||+++|++ |.+|+.|++.|..+++..+.. +|...
T Consensus 83 ~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~~el~~-~~~~~ 122 (130)
T 3dai_A 83 LEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDE-DFEQL 122 (130)
T ss_dssp HHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHH
T ss_pred HHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 9999999877 899999999999999877653 66543
No 95
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=183.49 Aligned_cols=109 Identities=27% Similarity=0.294 Sum_probs=101.2
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccC--CccChHHHHHhhccC---CCCCHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGN--NILDLRKIDQRVDRL---EYNGVMELV 2006 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~--~PiDL~~I~qri~~~---eY~~v~ef~ 2006 (2239)
.+|++..+++|..||.+|.. |..+..|++.++ |+||.+ |+ +||||.||..||+.+ .|.+++||+
T Consensus 71 ~~m~~~~~~~c~~iL~~l~~------~~~s~pF~~pV~----~~Yy~i-Ik~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~ 139 (189)
T 2ro1_A 71 AKLSPANQRKCERVLLALFC------HEPCRPLHQLAT----DSTFSL-DQPGGTLDLTLIRARLQEKLSPPYSSPQEFA 139 (189)
T ss_dssp CSSCHHHHHHHHHHHHHHHH------STTHHHHHSCSC----CTTCSS-SCSSCCCCHHHHHHHHHTSSSSCCSCHHHHH
T ss_pred cCCCHHHHHHHHHHHhhccc------CccchhhcCCCC----hhhhcc-ccCCCcccHHHHHHHHhcCCCcccCCHHHHH
Confidence 47899999999999999975 458999999876 899999 98 899999999999999 999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 000101 2007 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFRE 2052 (2239)
Q Consensus 2007 ~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~df~~ 2052 (2239)
+||+|||+||+.|| +++.+|.+|..|+++|..+|+..||+..|..
T Consensus 140 ~Dv~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~~~~~ 184 (189)
T 2ro1_A 140 QDVGRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDTKFSA 184 (189)
T ss_dssp HHHHHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 99999999999999 5899999999999999999999999988754
No 96
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=172.72 Aligned_cols=109 Identities=16% Similarity=0.269 Sum_probs=96.2
Q ss_pred CCccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHH
Q 000101 1926 GSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMEL 2005 (2239)
Q Consensus 1926 gs~~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef 2005 (2239)
||+..-.++...+...|..|+++|... ..+..|+. | +||||+| |++||||.+|..||+.++|.++.+|
T Consensus 1 ~~~~~e~~~~~~L~~~~~~il~~l~~~------~~~~~F~~-P----~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~~f 68 (131)
T 2dkw_A 1 GSSGSSGNTLRELRLFLRDVTKRLATD------KRFNIFSK-P----VSDYLEV-IKEPMDLSTVITKIDKHNYLTAKDF 68 (131)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHHHHHHS------GGGCTTSS-C----CSSCTTS-CSSCCCHHHHHHHHHTTCCCSSHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhC------ccchhhcC-c----CccHHhH-cCCCcCHHHHHHHHcCCCCCCHHHH
Confidence 344444566788889999999999765 34678988 4 9999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCcH----HHHHHHHHHHHHHHHHHHhCC
Q 000101 2006 VSDVQFMLKGAMQFYGFSHE----VRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2006 ~~D~qLM~~Na~~yn~~~se----v~~dA~~L~~~f~~~~k~~fP 2046 (2239)
..||.|||.||+.||+++|+ +|.+|+.|++.|..+|+..+.
T Consensus 69 ~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 69 LKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999996 589999999999999977665
No 97
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.70 E-value=3.1e-16 Score=203.36 Aligned_cols=107 Identities=22% Similarity=0.273 Sum_probs=94.4
Q ss_pred eEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCC-
Q 000101 1345 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP- 1423 (2239)
Q Consensus 1345 KVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDp- 1423 (2239)
..||||.....++.+...|...++.+..+||+++.++|..+++.|+.+++.+. ||++|+++++|||+ .+++||++|.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCcc
Confidence 44888998999999999999999999999999999999999999997444443 69999999999999 9999999999
Q ss_pred -------------CCCcchHHHhhhhhcccCCc-ceEEEEEEeh
Q 000101 1424 -------------DPNPKNEEQAVARAHRIGQK-REVKVIYMEA 1453 (2239)
Q Consensus 1424 -------------pWNP~~dlQAiGRAhRIGQk-KeV~VyrLva 1453 (2239)
|++...+.|+.|||+|.|.. ....|+.+..
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 88999999999999999977 3456666644
No 98
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.69 E-value=4e-17 Score=210.33 Aligned_cols=250 Identities=18% Similarity=0.170 Sum_probs=165.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHh
Q 000101 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVA 1096 (2239)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~ 1096 (2239)
.+.+.|+..+||+|||.++...+.. ....+||++|+. +..|+...+.+.+. ..+....|... .
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~------~g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~---------~ 294 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRT---------I 294 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHH------TTCCEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCE---------E
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHH------CCCeEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEe---------c
Confidence 4566789999999999877655432 234799999987 66778887776653 33444555432 2
Q ss_pred hcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhh--HHHHHhhcccc---ceEEEecCCCCCCCHHHHHHHH
Q 000101 1097 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES--VLARDLDRYRC---QRRLLLTGTPLQNDLKELWSLL 1171 (2239)
Q Consensus 1097 ~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~S--KlskaLk~Lka---~rRLLLTGTPIQNnL~ELwsLL 1171 (2239)
....+|+|+|++.|..+ ..+...++++|||||||.+- ... .+...+..+.. ...+++||||-..
T Consensus 295 ~~~~~IlV~TPGrLl~~-~~l~l~~l~~lVlDEAH~l~-~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~--------- 363 (666)
T 3o8b_A 295 TTGAPVTYSTYGKFLAD-GGCSGGAYDIIICDECHSTD-STTILGIGTVLDQAETAGARLVVLATATPPGS--------- 363 (666)
T ss_dssp CCCCSEEEEEHHHHHHT-TSCCTTSCSEEEETTTTCCS-HHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC---------
T ss_pred cCCCCEEEECcHHHHhC-CCcccCcccEEEEccchhcC-ccHHHHHHHHHHhhhhcCCceEEEECCCCCcc---------
Confidence 35789999999999654 34555679999999998763 222 23333444432 2367789997330
Q ss_pred hhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEecc
Q 000101 1172 NLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRM 1251 (2239)
Q Consensus 1172 nFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~M 1251 (2239)
+. .+ .|.. ..+.+..
T Consensus 364 -------i~----------~~----------------------------------------------~p~i--~~v~~~~ 378 (666)
T 3o8b_A 364 -------VT----------VP----------------------------------------------HPNI--EEVALSN 378 (666)
T ss_dssp -------CC----------CC----------------------------------------------CTTE--EEEECBS
T ss_pred -------cc----------cC----------------------------------------------Ccce--EEEeecc
Confidence 00 00 0000 0000000
Q ss_pred CHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHH
Q 000101 1252 SAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWI 1331 (2239)
Q Consensus 1252 S~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLel 1331 (2239)
... +.. ... .+ .
T Consensus 379 ~~~-------------i~~-------------------------------------------~~~----~~-----~--- 390 (666)
T 3o8b_A 379 TGE-------------IPF-------------------------------------------YGK----AI-----P--- 390 (666)
T ss_dssp CSS-------------EEE-------------------------------------------TTE----EE-----C---
T ss_pred cch-------------hHH-------------------------------------------HHh----hh-----h---
Confidence 000 000 000 00 0
Q ss_pred HHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccC
Q 000101 1332 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLN 1411 (2239)
Q Consensus 1332 LdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLN 1411 (2239)
+. ...+.++||||+....++.+.+.|...|+.+..+||+++.++ |..... -+|++|+++++|||
T Consensus 391 l~------~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGID 454 (666)
T 3o8b_A 391 IE------AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYT 454 (666)
T ss_dssp GG------GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCC
T ss_pred hh------hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCC
Confidence 00 014779999999999999999999999999999999998764 333222 58999999999999
Q ss_pred CCcCceEE----------EcC-----------CCCCcchHHHhhhhhcccCCcce
Q 000101 1412 LQSADTVI----------IYD-----------PDPNPKNEEQAVARAHRIGQKRE 1445 (2239)
Q Consensus 1412 LqaADtVI----------ifD-----------ppWNP~~dlQAiGRAhRIGQkKe 1445 (2239)
+. +++|| +|| .|.++..|+||+||++| |....
T Consensus 455 Id-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 455 GD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp CC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred CC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 96 99998 577 78888999999999999 75543
No 99
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.69 E-value=5.6e-17 Score=178.79 Aligned_cols=122 Identities=25% Similarity=0.338 Sum_probs=96.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1403 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLST 1403 (2239)
..+.|+..|.++|.... .+.++||||+....++.|..+|...|+.+..++|+++..+|..+++.|+.+... +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 35679999999888642 578999999999999999999999999999999999999999999999975444 78999
Q ss_pred cccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1404 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1404 rAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
+++++|||++.+++||+||+|||+..|.||+||++|.|++..+.++
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 149 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 149 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEE
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEE
Confidence 9999999999999999999999999999999999999987665444
No 100
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.69 E-value=1.2e-16 Score=182.45 Aligned_cols=141 Identities=28% Similarity=0.310 Sum_probs=110.2
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPsl 1076 (2239)
..+|++||.+++.+++. +.++||+++||+|||+++++++..+ .+++|||||+ .|+.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~--~~ 158 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (237)
T ss_dssp CCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--CC
Confidence 45899999999998664 4468999999999999998887643 4689999998 5889999999994 45
Q ss_pred c-eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEe
Q 000101 1077 S-CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLL 1155 (2239)
Q Consensus 1077 k-vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLL 1155 (2239)
. +.++.|... ...+|+|+||+.+......+. ..|++|||||||++.+... ...+..+...++|+|
T Consensus 159 ~~v~~~~g~~~-----------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~~--~~i~~~~~~~~~l~L 224 (237)
T 2fz4_A 159 EYVGEFSGRIK-----------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESY--VQIAQMSIAPFRLGL 224 (237)
T ss_dssp GGEEEESSSCB-----------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTTH--HHHHHTCCCSEEEEE
T ss_pred CeEEEEeCCCC-----------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChHH--HHHHHhccCCEEEEE
Confidence 6 777777643 256899999999987765543 4699999999999976543 344556678899999
Q ss_pred cCCCCCCCH
Q 000101 1156 TGTPLQNDL 1164 (2239)
Q Consensus 1156 TGTPIQNnL 1164 (2239)
||||.+++-
T Consensus 225 SATp~r~D~ 233 (237)
T 2fz4_A 225 TATFEREDG 233 (237)
T ss_dssp EESCC----
T ss_pred ecCCCCCCC
Confidence 999988764
No 101
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.68 E-value=1.6e-16 Score=171.01 Aligned_cols=118 Identities=21% Similarity=0.311 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000101 1328 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1407 (2239)
Q Consensus 1328 KLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGG 1407 (2239)
|+..|..++... .+.++||||+....++.+..+|...|+.+..+||+++..+|..+++.|+.+... +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChhh
Confidence 999999988864 578999999999999999999999999999999999999999999999975444 689999999
Q ss_pred cccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1408 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1408 eGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+|||++.+++||+||+|||+..|.|++||++|.|+...|.++.
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~ 134 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 134 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEE
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999999887765554
No 102
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=177.06 Aligned_cols=119 Identities=26% Similarity=0.335 Sum_probs=104.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..|.++|.. .+.++||||++...++.|..+|...|+.+..+||+++..+|..+++.|+.+... +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 35688877776653 467999999999999999999999999999999999999999999999975444 789999
Q ss_pred ccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
++++|||++.+++||+||+|||+..|.||+||++|.|++..+.++
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l 157 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTF 157 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEE
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEE
Confidence 999999999999999999999999999999999999998766554
No 103
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.67 E-value=9.4e-15 Score=189.51 Aligned_cols=111 Identities=22% Similarity=0.228 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc
Q 000101 1327 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1406 (2239)
Q Consensus 1327 GKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAG 1406 (2239)
+++..|...|..+...+.+|||||.....++.|.++|...|+.+..+||.++..+|.++++.|+.+... +|++|+++
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~l 505 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLL 505 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecchh
Confidence 455555555666666789999999999999999999999999999999999999999999999975444 79999999
Q ss_pred ccccCCCcCceEEEcCC-----CCCcchHHHhhhhhccc
Q 000101 1407 GRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1407 GeGLNLqaADtVIifDp-----pWNP~~dlQAiGRAhRI 1440 (2239)
++|||++.+++||++|. ++++..|+|++||++|.
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 544 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC
Confidence 99999999999999998 89999999999999997
No 104
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.66 E-value=2.7e-15 Score=210.52 Aligned_cols=149 Identities=19% Similarity=0.131 Sum_probs=100.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--------CCCCeEEEechH-HHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--------NYGPHLIIVPNA-VLVNWKSELH 1070 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~--------~~GP~LIVVP~S-LLsQW~~Ef~ 1070 (2239)
+|.+.|.+++..++ +.+.|.+++..||+|||+.+...|+..+.... ..+.+|+|+|.. |+.+-..+|.
T Consensus 79 ~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 68899999987654 46788999999999999998777665543221 234689999966 7777778887
Q ss_pred HHCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh------hhcccCCceEEEecccccccChh-hH--
Q 000101 1071 KWLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR------SKLSKVDWKYIIIDEAQRMKDRE-SV-- 1139 (2239)
Q Consensus 1071 KwaP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~------s~L~kikWd~VIIDEAHrIKN~~-SK-- 1139 (2239)
+.+. ++.+..+.|......+ .....+|+|||+|.+.... ..+ ....+|||||+|.+.+.- ..
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~-----~~~~~~IlVtTpEkld~llr~~~~~~~l--~~v~~vIiDEvH~l~d~RG~~lE 228 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE-----EISATQIIVCTPEKWDIITRKGGERTYT--QLVRLIILDEIHLLHDDRGPVLE 228 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT-----TGGGCSEEEECHHHHHHHTTSSTTHHHH--TTEEEEEETTGGGGGSTTHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc-----ccCCCCEEEECHHHHHHHHcCCccchhh--cCcCEEEEecchhcCCccHHHHH
Confidence 7664 4567777776432111 1246899999999874321 112 257899999999886522 11
Q ss_pred --HHHHhh---ccc-cceEEEecCC
Q 000101 1140 --LARDLD---RYR-CQRRLLLTGT 1158 (2239)
Q Consensus 1140 --lskaLk---~Lk-a~rRLLLTGT 1158 (2239)
+.+.+. ... .-++++||||
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSAT 253 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSAT 253 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecc
Confidence 222221 122 3368999999
No 105
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.65 E-value=2.5e-14 Score=183.28 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=102.2
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1403 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLST 1403 (2239)
....|+..|...+..+...+.+|||||......+.|...|...|+++..|||.....+|..+...|.. +. ++|+|
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~---VtVAT 529 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM---VTIAT 529 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC---EEEEE
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce---EEEEc
Confidence 34468888888888887789999999999999999999999999999999998554444444445543 33 89999
Q ss_pred cccccccCCC--------cCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1404 RAAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1404 rAGGeGLNLq--------aADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
+.+|+|+|+. ...+||+||.|-++..|.|++||++|.|.......|
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~f 583 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFF 583 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEE
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEE
Confidence 9999999998 567999999999999999999999999988765443
No 106
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.65 E-value=1.1e-16 Score=190.62 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCC-CHHHHHHHHHHHHH
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYN-GVMELVSDVQFMLK 2014 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~-~v~ef~~D~qLM~~ 2014 (2239)
+.++..|..+|..+. ++||.+|..|+.+|+++.+||||++ |++||||.+|++|| .+|. ++.+|+.||.|||+
T Consensus 27 p~~~~~~~~~L~~~~----~~~r~~~~~F~~p~~~~~~PdY~~i-Ik~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~ 99 (311)
T 2r0y_A 27 PKFNRFISFTLDVLI----DKYKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTK 99 (311)
T ss_dssp TTHHHHHHHHHHHHH----HHSHHHHGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----HcCCchhHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHH
Confidence 456667888887763 4799999999999999999999999 99999999999999 6676 89999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||+.||+++|.||++|+.|+++|...|.++
T Consensus 100 Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 100 NCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998765
No 107
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=167.65 Aligned_cols=115 Identities=19% Similarity=0.268 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000101 1328 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1407 (2239)
Q Consensus 1328 KLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGG 1407 (2239)
|+..|..++..+ .+.++||||+....++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|++++
T Consensus 21 K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~ 95 (175)
T 2rb4_A 21 KYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVCA 95 (175)
T ss_dssp HHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSCC
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecchh
Confidence 888888877654 467999999999999999999999999999999999999999999999975444 789999999
Q ss_pred cccCCCcCceEEEcCCC------CCcchHHHhhhhhcccCCcceEE
Q 000101 1408 RGLNLQSADTVIIYDPD------PNPKNEEQAVARAHRIGQKREVK 1447 (2239)
Q Consensus 1408 eGLNLqaADtVIifDpp------WNP~~dlQAiGRAhRIGQkKeV~ 1447 (2239)
+|||++.+++||+||+| |++..|.||+||++|.|+...+.
T Consensus 96 ~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~ 141 (175)
T 2rb4_A 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAF 141 (175)
T ss_dssp TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEE
T ss_pred cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEE
Confidence 99999999999999999 67789999999999999765443
No 108
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.63 E-value=2.3e-15 Score=165.28 Aligned_cols=154 Identities=20% Similarity=0.156 Sum_probs=115.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH---hCCCCCeEEEech-HHHHHHHHHHHHHCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF---KGNYGPHLIIVPN-AVLVNWKSELHKWLPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~---k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPs 1075 (2239)
+|+|||.+++.+++. +.++|++.+||+|||++++..+...+.. ......+|||||+ .++.||.+++.++++.
T Consensus 23 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 799999999998876 6789999999999999877766554321 1234579999998 5889999999999998
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhccc-cc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~ 1150 (2239)
+.+..+.|......... .....++|+|+|++.+..... .+...++++|||||||++.+ ....+...+..+. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~--~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~ 176 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKE--ALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 176 (207)
T ss_dssp SCEEEECSSSCSHHHHH--HHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTS
T ss_pred ceEEEEECCCChHHHHH--HhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccC
Confidence 88888887654433221 122478999999999876532 33445789999999999854 3344555555554 34
Q ss_pred eEEEecCCC
Q 000101 1151 RRLLLTGTP 1159 (2239)
Q Consensus 1151 rRLLLTGTP 1159 (2239)
..++||||+
T Consensus 177 ~~i~~SAT~ 185 (207)
T 2gxq_A 177 QTLLFSATL 185 (207)
T ss_dssp EEEEECSSC
T ss_pred eEEEEEEec
Confidence 578999997
No 109
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.63 E-value=1.3e-15 Score=171.18 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=108.0
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..|..++.. ..+.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+... +|++|+
T Consensus 15 ~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT~ 89 (212)
T 3eaq_A 15 VRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVATD 89 (212)
T ss_dssp TTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEECT
T ss_pred HHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEecC
Confidence 45799999999874 3478999999999999999999999999999999999999999999999975444 699999
Q ss_pred ccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++++|||++.+++||+||+||++..|.||+||++|.|+...+.+++
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~ 135 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLY 135 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEE
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEE
Confidence 9999999999999999999999999999999999999876655443
No 110
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.63 E-value=2.8e-16 Score=190.54 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCC-CHHHHHHHHHHHHH
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYN-GVMELVSDVQFMLK 2014 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~-~v~ef~~D~qLM~~ 2014 (2239)
+.+...|..+|..| ++.|+.++..|+.+|++.++||||+| |++||||.+|++|| .+|. ++.+|+.||.|||+
T Consensus 77 ~~~~~~~~~~l~~l----~~~~~~~~~~F~~p~~~~~~PdY~~i-Ik~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~ 149 (361)
T 2r10_A 77 PKFNRFISFTLDVL----IDKYKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTK 149 (361)
T ss_dssp TTHHHHHHHHHHHH----HHHTHHHHGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HHcCCcccHHhcCCCCcccCCChHhh-cCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHH
Confidence 45666788888766 55789999999999999999999999 99999999999999 5666 79999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||+.||+++|.||.+|..|+++|...|.+.
T Consensus 150 Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 150 NCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988764
No 111
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.63 E-value=4.8e-14 Score=183.05 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1405 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrA 1405 (2239)
.+++..|...|......+.+|||||.....++.|.++|...|+.+..+||+++..+|.++++.|..+... +|++|++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccCh
Confidence 3566667666777777899999999999999999999999999999999999999999999999864433 7999999
Q ss_pred cccccCCCcCceEEEcCC-----CCCcchHHHhhhhhcccCC
Q 000101 1406 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRIGQ 1442 (2239)
Q Consensus 1406 GGeGLNLqaADtVIifDp-----pWNP~~dlQAiGRAhRIGQ 1442 (2239)
+++|||++.+++||++|. ++++..++|++||++|.|.
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~ 540 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR 540 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC
Confidence 999999999999999998 8999999999999999863
No 112
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=167.71 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=94.6
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechH-HHHH-HHHHHHHHC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNA-VLVN-WKSELHKWL 1073 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k---~~~GP~LIVVP~S-LLsQ-W~~Ef~Kwa 1073 (2239)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++... ...+++|||||.. ++.| |..++.+|.
T Consensus 32 ~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4899999999998875 67899999999999999998887766432 2356899999985 7788 999999997
Q ss_pred C-CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--------cccCCceEEEecccccccC
Q 000101 1074 P-SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1074 P-slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--------L~kikWd~VIIDEAHrIKN 1135 (2239)
. .+.+..+.|........... ....+|+|+||+.+...... +....|++|||||||++..
T Consensus 108 ~~~~~v~~~~g~~~~~~~~~~~--~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISFPEV--VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp TTTSCEEECCC---CCCCHHHH--HHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred ccCceEEEEeCCcccchhHHhh--ccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 6 46777777764432221111 12579999999999765433 3345789999999999954
No 113
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.62 E-value=2.8e-15 Score=166.89 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=115.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---Ps 1075 (2239)
+++|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||+. |+.||.+++.+|. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998886 677999999999999998887776553222334899999975 8899999999987 46
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh---hhHHHHHhhccc-c
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYR-C 1149 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~---~SKlskaLk~Lk-a 1149 (2239)
+.+.++.|........ ..+.....+|+|+|++.+..... .+...++++|||||||++.+. ...+...+..+. .
T Consensus 112 ~~v~~~~g~~~~~~~~-~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~ 190 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDE-EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 190 (220)
T ss_dssp CCEEEESCCSCHHHHH-HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSS
T ss_pred ceEEEEeCCCChHHHH-HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCc
Confidence 7888888875543322 22344567999999999976532 233457899999999999542 223333444443 4
Q ss_pred ceEEEecCCCCC
Q 000101 1150 QRRLLLTGTPLQ 1161 (2239)
Q Consensus 1150 ~rRLLLTGTPIQ 1161 (2239)
.++++|||||-.
T Consensus 191 ~~~i~~SAT~~~ 202 (220)
T 1t6n_A 191 KQVMMFSATLSK 202 (220)
T ss_dssp SEEEEEESCCCT
T ss_pred CeEEEEEeecCH
Confidence 568899999843
No 114
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.61 E-value=8.7e-16 Score=179.22 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
..+...|..||++|... ..+..|+.++++..+||||.+ |++||||.+|..||+.+.|.++.+|+.||.|||.|
T Consensus 13 ~~l~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (265)
T 3uv5_A 13 VTLSSILESIINDMRDL------PNTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 85 (265)
T ss_dssp HHHHHHHHHHHHHHHTS------TTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC------CCchhhhCCCChhhcCCHHHH-hCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Confidence 37788999999999664 358999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2016 a~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
|+.||+++|.||.+|..|+++|...++..-+
T Consensus 86 a~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~ 116 (265)
T 3uv5_A 86 SATYNGPKHSLTQISQSMLDLCDEKLKEKED 116 (265)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987644
No 115
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.40 E-value=5.3e-17 Score=175.75 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=108.0
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1405 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrA 1405 (2239)
..|+.+|..++.. ..+.++||||+....++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 4588888888875 3467999999999999999999999999999999999999999999999975443 7999999
Q ss_pred cccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1406 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1406 GGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+++|||++.+++||+||+|||+..+.|++||++|.|++..|.++.
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 999999999999999999999999999999999999987765543
No 116
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.59 E-value=9.1e-15 Score=164.66 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=114.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh----CCCCCeEEEechH-HHHHHHHHHHHHCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK----GNYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k----~~~GP~LIVVP~S-LLsQW~~Ef~KwaP 1074 (2239)
.++|||.+++.+++. +.++|++.+||+|||++++..+...+... .....+|||||+. |+.||..++.++..
T Consensus 47 ~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp BCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 799999999999875 67899999999999999887776554321 2345789999975 88999999999986
Q ss_pred C--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh---hcccCCceEEEecccccccCh--hhHHHHHhhcc
Q 000101 1075 S--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY 1147 (2239)
Q Consensus 1075 s--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~L 1147 (2239)
. +.+.++.|......... .....+|+|+|++.+..... .+...+|++|||||||++.+. ...+...+..+
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~---~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~ 199 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAE---RINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL 199 (236)
T ss_dssp TSSCCEEEECCC--CHHHHH---HHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCHHHHHH---hCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhC
Confidence 4 67777777655433221 12478999999999976533 234457899999999998653 34555566666
Q ss_pred c-cceEEEecCCC
Q 000101 1148 R-CQRRLLLTGTP 1159 (2239)
Q Consensus 1148 k-a~rRLLLTGTP 1159 (2239)
+ ...+++||||+
T Consensus 200 ~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 200 PKKRQTLLFSATQ 212 (236)
T ss_dssp CTTSEEEEEESSC
T ss_pred CCCCeEEEEEeeC
Confidence 5 34579999997
No 117
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.59 E-value=7.7e-15 Score=165.35 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=113.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---S 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP---s 1075 (2239)
.++|||.+++..++. +.+.|++.+||+|||++++..+...+........+|||||+. |+.||.+++.+|.. +
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 599999999998775 678999999999999997666655443234456899999975 88999999999963 6
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccCh---hhHHHHHhhccc-c
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYR-C 1149 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~---~SKlskaLk~Lk-a 1149 (2239)
+.+.++.|+....... ......+|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..++ .
T Consensus 122 ~~~~~~~g~~~~~~~~---~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~ 198 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDK---TRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPAS 198 (230)
T ss_dssp CCEEEECTTSCHHHHH---HHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSS
T ss_pred ceEEEEeCCCCHHHHH---HhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCC
Confidence 7788888875543322 12247899999999997653 2333457889999999999543 344445555565 4
Q ss_pred ceEEEecCCC
Q 000101 1150 QRRLLLTGTP 1159 (2239)
Q Consensus 1150 ~rRLLLTGTP 1159 (2239)
.++++||||+
T Consensus 199 ~~~l~lSAT~ 208 (230)
T 2oxc_A 199 KQMLAVSATY 208 (230)
T ss_dssp CEEEEEESCC
T ss_pred CeEEEEEecc
Confidence 4678999995
No 118
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.59 E-value=8.3e-15 Score=160.94 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=113.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---S 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP---s 1075 (2239)
+|+|||.+++..++. +.++|+..+||+|||++++..+...+.......++|||||+. |+.||..++.+++. .
T Consensus 25 ~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 799999999998875 678999999999999988776665543333445799999975 78999999998874 5
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhccc-cc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lk-a~ 1150 (2239)
+.+..+.|......... ......+|+|+|++.+..... .+...++++|||||||++... ...+...+..++ ..
T Consensus 101 ~~~~~~~g~~~~~~~~~--~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 178 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIM--RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 178 (206)
T ss_dssp CCEEEECSSSCHHHHHH--HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTC
T ss_pred ceEEEEeCCccHHHHHH--hcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccc
Confidence 67777777765443322 223578999999999876532 233447899999999998653 333444444554 45
Q ss_pred eEEEecCCC
Q 000101 1151 RRLLLTGTP 1159 (2239)
Q Consensus 1151 rRLLLTGTP 1159 (2239)
.+++||||+
T Consensus 179 ~~l~~SAT~ 187 (206)
T 1vec_A 179 QILLYSATF 187 (206)
T ss_dssp EEEEEESCC
T ss_pred eEEEEEeeC
Confidence 689999997
No 119
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.59 E-value=5.9e-15 Score=164.63 Aligned_cols=161 Identities=17% Similarity=0.100 Sum_probs=115.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC----
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP---- 1074 (2239)
+++|||.+++.+++. +.++|++.+||+|||++++..+...+........+|||||+. |+.||.+++.+++.
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 699999999999886 678999999999999998777665543333456799999975 88999999999875
Q ss_pred --CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhccc
Q 000101 1075 --SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR 1148 (2239)
Q Consensus 1075 --slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk 1148 (2239)
.+.+..+.|+....... ......++|+|+|++.+..... .+....+++|||||||++.+ ....+...+..++
T Consensus 102 ~~~~~~~~~~g~~~~~~~~--~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~ 179 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKAL--EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP 179 (219)
T ss_dssp GGCCCEEEECCCSHHHHTT--CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccceEEEEEeCCCCHHHHH--HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC
Confidence 45666677765432211 0112367899999999876432 23345789999999999864 3344555556664
Q ss_pred -cceEEEecCCCCCCCHHHH
Q 000101 1149 -CQRRLLLTGTPLQNDLKEL 1167 (2239)
Q Consensus 1149 -a~rRLLLTGTPIQNnL~EL 1167 (2239)
...+++||||+ .+.+.++
T Consensus 180 ~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 180 KDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp TTCEEEEEESCC-CGGGHHH
T ss_pred cccEEEEEecCC-CHHHHHH
Confidence 34588999997 4444443
No 120
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.58 E-value=1.9e-14 Score=164.99 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=116.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
++++||.+++..++. +.+.|++.+||+|||++++..+...+........+|||||+. |+.||.++|.+++. ++
T Consensus 65 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 799999999998875 678899999999999998887776665455556799999986 78999999999975 56
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh---hcccCCceEEEecccccccC--hhhHHHHHhhccc-cc
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~ 1150 (2239)
.+.++.|+........ .....++|+|+|++.+..... .+....+++|||||||++.+ ....+...+..++ ..
T Consensus 141 ~~~~~~g~~~~~~~~~--~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~ 218 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSL--ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDR 218 (249)
T ss_dssp CEEEECTTSCHHHHHH--HHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSS
T ss_pred eEEEEECCCChHHHHH--HhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCC
Confidence 7777777655433322 223578999999999976543 23344689999999999865 3334555555564 45
Q ss_pred eEEEecCCC
Q 000101 1151 RRLLLTGTP 1159 (2239)
Q Consensus 1151 rRLLLTGTP 1159 (2239)
.+++||||+
T Consensus 219 ~~l~~SAT~ 227 (249)
T 3ber_A 219 KTFLFSATM 227 (249)
T ss_dssp EEEEEESSC
T ss_pred eEEEEeccC
Confidence 688999997
No 121
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.57 E-value=1.6e-14 Score=160.98 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=107.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
+|+|||.+++..++. +.++|++.+||+|||++++..+...+........+|||||+. |+.||..++.+++. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 799999999998875 678999999999999987665554443334456899999975 78999999999976 45
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhccc-cce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~r 1151 (2239)
.+..+.|........ ......+|+|+|++.+..... .+...++++|||||||++.+ ....+...+..+. ..+
T Consensus 112 ~~~~~~g~~~~~~~~---~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~ 188 (224)
T 1qde_A 112 KVHACIGGTSFVEDA---EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 188 (224)
T ss_dssp CEEEECC-------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCE
T ss_pred eEEEEeCCcchHHHH---hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCe
Confidence 667777765432221 112248999999999876532 23345789999999999854 3334445555554 345
Q ss_pred EEEecCCC
Q 000101 1152 RLLLTGTP 1159 (2239)
Q Consensus 1152 RLLLTGTP 1159 (2239)
+++||||+
T Consensus 189 ~i~lSAT~ 196 (224)
T 1qde_A 189 VVLLSATM 196 (224)
T ss_dssp EEEEESSC
T ss_pred EEEEEeec
Confidence 78999997
No 122
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.55 E-value=1.9e-15 Score=178.62 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
..++..|..||++|.. +..+..|+.++++..+||||++ |++||||.+|..||+.+.|.++.+|..||.|||+|
T Consensus 46 ~~l~~~~~~il~~l~~------~~~a~~F~~pV~~~~~pdY~~i-Ik~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~N 118 (292)
T 3aad_A 46 VTLSSILESIINDMRD------LPNTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 118 (292)
T ss_dssp HHHHHHHHHHHHHHSS------STTCGGGSSSCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh------CCcchhhcCCCCchhcccHHHH-cCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHH
Confidence 3457789999999954 4678999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2016 a~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
|+.||+++|.+|.+|..|+++|..+++..
T Consensus 119 a~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 119 SATYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp HHHHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred HHHHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999888764
No 123
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.55 E-value=1.7e-14 Score=171.13 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=105.6
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+.+|.+++.... +.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+..+ +|++|+
T Consensus 12 ~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECS
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEec
Confidence 3569999999987654 88999999999999999999999999999999999999999999999975544 799999
Q ss_pred ccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++++|||++.+++||+||+|||+..|.|++||++|.|+...+.+++
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEE
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEe
Confidence 9999999999999999999999999999999999999886655443
No 124
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.55 E-value=4.4e-14 Score=160.96 Aligned_cols=154 Identities=22% Similarity=0.260 Sum_probs=112.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---------CCCCeEEEechH-HHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG---------NYGPHLIIVPNA-VLVNWKSEL 1069 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~---------~~GP~LIVVP~S-LLsQW~~Ef 1069 (2239)
+|+|||.+++..++. +.++|++.+||+|||++++..+...+.... ....+|||||+. |+.||..++
T Consensus 45 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 799999999998876 678899999999999998887766553221 235799999975 889999999
Q ss_pred HHHCCC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHH
Q 000101 1070 HKWLPS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARD 1143 (2239)
Q Consensus 1070 ~KwaPs--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlska 1143 (2239)
.+|... +.+..+.|+........ ......+|+|+|++.+..... .+....+++|||||||++.+. ...+...
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 198 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIR--EVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKI 198 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHH--HHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred HHHhccCCceEEEEECCCCHHHHHH--HhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHH
Confidence 999754 56666666654433321 223478999999999976532 233446789999999998543 3445555
Q ss_pred hhcc--c---cceEEEecCCC
Q 000101 1144 LDRY--R---CQRRLLLTGTP 1159 (2239)
Q Consensus 1144 Lk~L--k---a~rRLLLTGTP 1159 (2239)
+..+ . ...+++|||||
T Consensus 199 ~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 199 IEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHSSCCCCGGGCEEEEEESSC
T ss_pred HhhccCCCCCCcEEEEEEEeC
Confidence 5533 2 34589999997
No 125
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.54 E-value=2.5e-14 Score=162.01 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=108.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
.|++||.+++..++. +.++|++.+||+|||++++..+...+........+|||||+. |+.||..++.+++. .+
T Consensus 52 ~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 699999999998875 678999999999999987777665543233456899999975 88999999999986 45
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhcccc-ce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRC-QR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka-~r 1151 (2239)
.+..+.|....... ...+....++|+|+|++.+..... .+....+++|||||||++.+ ....+...+..+.. ..
T Consensus 128 ~~~~~~g~~~~~~~-~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~ 206 (237)
T 3bor_A 128 TCHACIGGTNVRNE-MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQ 206 (237)
T ss_dssp CEEEECC--------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCE
T ss_pred eEEEEECCCchHHH-HHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCe
Confidence 56666665443322 222334458999999999876532 23445689999999999843 34455666666643 45
Q ss_pred EEEecCCC
Q 000101 1152 RLLLTGTP 1159 (2239)
Q Consensus 1152 RLLLTGTP 1159 (2239)
.++||||+
T Consensus 207 ~i~~SAT~ 214 (237)
T 3bor_A 207 VVLLSATM 214 (237)
T ss_dssp EEEECSSC
T ss_pred EEEEEEec
Confidence 78899997
No 126
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.50 E-value=1.9e-13 Score=153.08 Aligned_cols=154 Identities=17% Similarity=0.216 Sum_probs=108.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH------hCCCCCeEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF------KGNYGPHLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~------k~~~GP~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
+++|||.+++..++. +.+.|+..+||+|||+.++..+...+.. ......+|||||+. |+.||..++.++
T Consensus 42 ~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 799999999988875 6788999999999999987766554421 12445789999977 889999999998
Q ss_pred C-CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhcc
Q 000101 1073 L-PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY 1147 (2239)
Q Consensus 1073 a-Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~L 1147 (2239)
. .++.+..+.|......... .....++|+|+|++.+..... .+...++++|||||||++.+. ...+...+..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~ 195 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQIE--DISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV 195 (228)
T ss_dssp CCTTCCEEEECC------CHH--HHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCceEEEEECCCChHHHHH--HhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhC
Confidence 6 4667777776644332221 123468999999999976432 233446899999999998643 33455555555
Q ss_pred c-cceEEEecCCC
Q 000101 1148 R-CQRRLLLTGTP 1159 (2239)
Q Consensus 1148 k-a~rRLLLTGTP 1159 (2239)
. ....++||||.
T Consensus 196 ~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 196 RPDRQTVMTSATW 208 (228)
T ss_dssp CSSCEEEEEESCC
T ss_pred CcCCeEEEEEeeC
Confidence 4 34578899995
No 127
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.46 E-value=8.4e-13 Score=149.85 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=112.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-----~~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
+++|||.+++..++. +.+.|+...||+|||+.++..+...+... .....+|||||+. |+.||..++.+++
T Consensus 51 ~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 699999999988876 67899999999999999887776655422 2345689999976 7889999998886
Q ss_pred C--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhcc
Q 000101 1074 P--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRY 1147 (2239)
Q Consensus 1074 P--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~L 1147 (2239)
. ++.+..+.|......... .....++|+|+|++.+..... .+...++++|||||||++.+ ....+...+..+
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~--~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~ 204 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIR--DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 204 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHH--HHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTS
T ss_pred hhcCceEEEEECCCChHHHHH--HhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhC
Confidence 3 567777777654433322 122368999999999976532 23344789999999999854 334455555566
Q ss_pred cc-ceEEEecCCC
Q 000101 1148 RC-QRRLLLTGTP 1159 (2239)
Q Consensus 1148 ka-~rRLLLTGTP 1159 (2239)
+. ...+++|||.
T Consensus 205 ~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 205 RPDRQTLMWSATW 217 (242)
T ss_dssp CSSCEEEEEESCC
T ss_pred CccceEEEEEeec
Confidence 43 4578899995
No 128
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.45 E-value=5.6e-13 Score=153.87 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=112.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHHHHCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~----~~GP~LIVVP~S-LLsQW~~Ef~KwaP 1074 (2239)
+|+|+|.+++..++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |+.||..++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 699999999988876 567899999999999998887776654321 345689999976 88999999999986
Q ss_pred C--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccC--hhhHHHHHhhcc
Q 000101 1075 S--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKD--RESVLARDLDRY 1147 (2239)
Q Consensus 1075 s--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN--~~SKlskaLk~L 1147 (2239)
. +.+..+.|......... .+ ..+++|+|+|++.+...... +...++.+|||||||++.+ ....+...+..+
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~-~~-~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~ 229 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQ-KL-GNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 229 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHH-HH-HHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS
T ss_pred hcCceEEEEECCCCHHHHHH-Hh-cCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhC
Confidence 4 45556666544332221 12 23589999999999765322 3334689999999999854 334445555555
Q ss_pred cc-ceEEEecCCC
Q 000101 1148 RC-QRRLLLTGTP 1159 (2239)
Q Consensus 1148 ka-~rRLLLTGTP 1159 (2239)
.. ...++||||+
T Consensus 230 ~~~~q~l~~SAT~ 242 (262)
T 3ly5_A 230 PTRRQTMLFSATQ 242 (262)
T ss_dssp CSSSEEEEECSSC
T ss_pred CCCCeEEEEEecC
Confidence 43 4578899997
No 129
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.44 E-value=6e-13 Score=150.66 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=107.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs-- 1075 (2239)
.++|||.+++..++. +.+.|+..+||+|||++++..+...+... .....+|||||+. |+.||..++.+++..
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 699999999988775 67789999999999999877766554322 2334699999976 889999999999864
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh----hcccCCceEEEecccccccC-----hhhHHHHHhhc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKD-----RESVLARDLDR 1146 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s----~L~kikWd~VIIDEAHrIKN-----~~SKlskaLk~ 1146 (2239)
+.+..+.|....... ........++|+|+|++.+..... .+...++.+|||||||++.. ....+...+..
T Consensus 127 ~~~~~~~~~~~~~~~-~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~ 205 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKK-FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLA 205 (245)
T ss_dssp CCEECCCHHHHHHTT-TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHH
T ss_pred ceEEEEecCccHHHH-hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHh
Confidence 444444443322111 111224567999999999976532 23344789999999999954 22333444443
Q ss_pred c--ccceEEEecCCC
Q 000101 1147 Y--RCQRRLLLTGTP 1159 (2239)
Q Consensus 1147 L--ka~rRLLLTGTP 1159 (2239)
+ ...++++||||+
T Consensus 206 ~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 206 CTSHKVRRAMFSATF 220 (245)
T ss_dssp CCCTTCEEEEEESSC
T ss_pred cCCCCcEEEEEeccC
Confidence 3 234679999997
No 130
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.32 E-value=5.6e-12 Score=148.78 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=108.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---P 1074 (2239)
..++++|..++..++. ..+.+.|++..||+|||++++..+...+........+|||||+. |+.|+...+.++. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 3799999999987764 12367899999999999998766655543333444699999987 7888888888775 4
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh---hcccCCceEEEecccccccC---hhhHHHHHhhccc
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKD---RESVLARDLDRYR 1148 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrIKN---~~SKlskaLk~Lk 1148 (2239)
.+.+.++.|...... ......+|+|+|++.+..... .+...++.+|||||||++.+ ....+...+..++
T Consensus 191 ~~~~~~~~~~~~~~~-----~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~ 265 (300)
T 3fmo_B 191 ELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 265 (300)
T ss_dssp TCCEEEESTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC
T ss_pred CcEEEEEeCCccHhh-----hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC
Confidence 677777776544221 113467899999999976642 33344789999999999864 2233334444444
Q ss_pred c-ceEEEecCCC
Q 000101 1149 C-QRRLLLTGTP 1159 (2239)
Q Consensus 1149 a-~rRLLLTGTP 1159 (2239)
. ...+++|||+
T Consensus 266 ~~~q~i~~SAT~ 277 (300)
T 3fmo_B 266 RNCQMLLFSATF 277 (300)
T ss_dssp TTCEEEEEESCC
T ss_pred CCCEEEEEeccC
Confidence 3 4578889997
No 131
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.30 E-value=5.5e-11 Score=151.01 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=68.5
Q ss_pred HHHHHHHHH-HhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccc
Q 000101 1331 ILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 1409 (2239)
Q Consensus 1331 lLdrIL~kL-katGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeG 1409 (2239)
.+...|..+ ...+.++|||+.....++.+.+.|.. +. +.+.|.. .+|.++++.|..+ .. ..|.+++....+|
T Consensus 371 ~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~-~~-il~~V~~~~~~EG 443 (540)
T 2vl7_A 371 IYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG-KY-LVMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS-CC-EEEEEC-------
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC-Ce-EEEEEecCceecc
Confidence 344444444 34567999999999999999888754 33 3445554 4688999999862 22 2233478999999
Q ss_pred cCCCc----CceEEEcCCCCCcc------------------------------hHHHhhhhhcccCCcceEEEE
Q 000101 1410 LNLQS----ADTVIIYDPDPNPK------------------------------NEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1410 LNLqa----ADtVIifDppWNP~------------------------------~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
||+++ +..||+++.|+-+. ...|++||+.|--...-|.++
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 99997 89999999996433 245999999997655555443
No 132
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.27 E-value=2.2e-10 Score=149.62 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=94.5
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHH---HHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVN---WKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQ---W~~Ef~Kwa 1073 (2239)
+...+|-|+.|+--|+. +. |....||+|||++++..+.... . ....++||||+.. ..| |...|.+++
T Consensus 77 G~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~a-L--~G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNA-L--TGKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHH-T--TCSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHH-H--hCCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 34677889999877664 33 8889999999998766553221 1 2246899999984 444 666666665
Q ss_pred CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHH----Hhh-----hhcccC---CceEEEecccccccChhhHHH
Q 000101 1074 PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIM----YDR-----SKLSKV---DWKYIIIDEAQRMKDRESVLA 1141 (2239)
Q Consensus 1074 Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~----kD~-----s~L~ki---kWd~VIIDEAHrIKN~~SKls 1141 (2239)
++.+.+..|+.....+. .....+|++.|++.|. ++. ..+... ...++||||+|+|.-..
T Consensus 148 -GLsv~~i~Gg~~~~~r~----~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDe---- 218 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAERR----KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDE---- 218 (997)
T ss_dssp -TCCEEECCTTCCHHHHH----HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSS----
T ss_pred -CCeEEEEeCCCCHHHHH----HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhC----
Confidence 56676666654322111 1225799999999983 221 112333 67899999999874211
Q ss_pred HHhhccccceEEEecCCCCCCCHHHHHHHHh
Q 000101 1142 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLN 1172 (2239)
Q Consensus 1142 kaLk~Lka~rRLLLTGTPIQNnL~ELwsLLn 1172 (2239)
+..-|++|| |+... ..+|..++
T Consensus 219 -------artPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 219 -------ARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp -------TTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred -------CCCCeeeeC-CCccc-hHHHHHHH
Confidence 112388999 87766 45554443
No 133
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.23 E-value=2.2e-11 Score=135.12 Aligned_cols=103 Identities=21% Similarity=0.384 Sum_probs=88.3
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2013 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~ 2013 (2239)
|+..+++.++.||+.|... .....|+. | . ++.||||.+|++||+.++|.++.+|++||.|||
T Consensus 72 ~~~el~~~l~~vl~~L~~~------~~s~~~~~---------y-~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf 133 (183)
T 3lqh_A 72 LEKELQISLKQVLTALLNS------RTTSHLLR---------Y-R--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKII 133 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTC------HHHHHHHT---------C-C--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc------cccHhhhh---------h-h--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 5677888889999988644 33445544 3 3 489999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCCchHHhh
Q 000101 2014 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREAR 2054 (2239)
Q Consensus 2014 ~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~df~~a~ 2054 (2239)
.||..||++.++|.+....|+.+|...|+.+||..++.+-|
T Consensus 134 ~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~~~~~ 174 (183)
T 3lqh_A 134 QAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVKKSR 174 (183)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTSCGGGCT
T ss_pred HHHhhccCCChhhhhhhhHHHHHHHHHHHHHCCCCCccccc
Confidence 99999999999999999999999999999999988877655
No 134
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.91 E-value=3.6e-08 Score=127.50 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=62.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
++||+|.+.+.-+...+.++.++|+...||+|||+.++..+...+... ..++||++|+. +..|+.+++.++.. .+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 579999999988877777788999999999999999988766655433 35789999976 78899999887642 45
Q ss_pred ceEEEec
Q 000101 1077 SCIYYVG 1083 (2239)
Q Consensus 1077 kvvvy~G 1083 (2239)
++++..|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 5544433
No 135
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.82 E-value=9.3e-09 Score=116.71 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=93.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~--~GP~LIVVP~S-LLsQW~~Ef~KwaPs- 1075 (2239)
.+++||.+++..+.. +...++..++|+|||.++..++.......+. ...+|+++|.. +..+....+...+..
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 578999999998876 6778999999999998776665554433332 23678888987 455666677665532
Q ss_pred Cc-eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccc-cChhhH--HHHHh-hccccc
Q 000101 1076 VS-CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM-KDRESV--LARDL-DRYRCQ 1150 (2239)
Q Consensus 1076 lk-vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrI-KN~~SK--lskaL-k~Lka~ 1150 (2239)
+. .+-|.-....+ ......+|+|+|++.+.+.... .-.++++|||||||++ .+.... ..+.+ ..+...
T Consensus 137 ~~~~~g~~~~~~~~------~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~ 209 (235)
T 3llm_A 137 PGKSCGYSVRFESI------LPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEV 209 (235)
T ss_dssp TTSSEEEEETTEEE------CCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTS
T ss_pred cCceEEEeechhhc------cCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCC
Confidence 11 11121111000 1124578999999998776432 2346899999999984 222221 22222 233445
Q ss_pred eEEEecCCC
Q 000101 1151 RRLLLTGTP 1159 (2239)
Q Consensus 1151 rRLLLTGTP 1159 (2239)
..+++|||+
T Consensus 210 ~~il~SAT~ 218 (235)
T 3llm_A 210 RIVLMSATI 218 (235)
T ss_dssp EEEEEECSS
T ss_pred eEEEEecCC
Confidence 678899996
No 136
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.74 E-value=2.8e-08 Score=126.56 Aligned_cols=131 Identities=21% Similarity=0.234 Sum_probs=95.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--s 1075 (2239)
.++||||.+.+.-+...+.++.++|+...||+|||+.++..+.. ...++||++|+. +..||.+++.++.. .
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 37899999999887777777888999999999999988776654 245899999977 78899999988743 4
Q ss_pred CceEEEecchhh--------------------------------HHHHHH-----------------HHhhcCccEEEEe
Q 000101 1076 VSCIYYVGAKDQ--------------------------------RSRLFS-----------------QVAALKFNVLVTT 1106 (2239)
Q Consensus 1076 lkvvvy~Gskd~--------------------------------Rk~l~~-----------------~i~~~kfdVVITT 1106 (2239)
+++++..|.... ...+.. .......+|||+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 666666653221 011111 1123467999999
Q ss_pred hhHHHHhh--hhcc-cCCceEEEecccccccC
Q 000101 1107 YEFIMYDR--SKLS-KVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1107 YE~L~kD~--s~L~-kikWd~VIIDEAHrIKN 1135 (2239)
|.++..+. ..+. .....+|||||||+|-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99998763 2221 13667899999999976
No 137
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=98.66 E-value=8.4e-10 Score=118.14 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=78.3
Q ss_pred cccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000101 1705 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1781 (2239)
Q Consensus 1705 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1781 (2239)
+.+.+ +++.|+.++ +.+||+++++| .|||++ |+||. ++||+|.. |..+|+.|.|.++.++..|+.+
T Consensus 10 ~~l~~-l~~~v~~~~-----De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~-Ikkri~~~~Y~sld~f~~D~~lmf 78 (147)
T 3iu6_A 10 ELIHN-LFVSVMSHQ-----DDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDI-IRKNVENNRYRRLDLFQEHMFEVL 78 (147)
T ss_dssp HHHHH-HHHHHHTCB-----CTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHH-HHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhhc-----CCCCCcchHHHhHCCCCC--ccccC--CCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHH
Confidence 45566 888999999 78999999999 999998 89998 99999999 9999999999999999999998
Q ss_pred --------CCCccccCCccccccccccccccccc
Q 000101 1782 --------SGSWTHDRDEGEDEQVLQPKIKRKRS 1807 (2239)
Q Consensus 1782 --------~~Sw~~~~~~~~d~~~~~~~~~rkr~ 1807 (2239)
+||||| +|+.+||-.+.++|.
T Consensus 79 ~NAr~yN~e~S~Iy-----eDAv~Lq~~f~~~r~ 107 (147)
T 3iu6_A 79 ERARRMNRTDSEIY-----EDAVELQQFFIKIRD 107 (147)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHH-----HHHHHHHHHHHHHHH
Confidence 999999 999999955555543
No 138
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=98.63 E-value=8.5e-10 Score=114.83 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=79.8
Q ss_pred cccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000101 1705 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1781 (2239)
Q Consensus 1705 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1781 (2239)
..++. +.+.++... +.+||+++.+| .+|++..||+||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 11 ~~~~~-ll~~l~~~~-----d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 11 EILEQ-LLEAIVVAT-----NPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKT-IAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp HHHHH-HHHHHHHCB-----CTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhcc-----CcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHH
Confidence 44555 677777777 66899999999 99999999999999999999999 9999999999999999999988
Q ss_pred --------CCCccccCCccccccccc-cccccccccc
Q 000101 1782 --------SGSWTHDRDEGEDEQVLQ-PKIKRKRSIR 1809 (2239)
Q Consensus 1782 --------~~Sw~~~~~~~~d~~~~~-~~~~rkr~~~ 1809 (2239)
+||+++ .++..|+ .+.++-.++.
T Consensus 84 ~Na~~yN~~~s~~~-----~~A~~L~~~f~~~~~~i~ 115 (120)
T 3ljw_A 84 KNAKTYNEPGSQVF-----KDANSIKKIFYMKKAEIE 115 (120)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHHHHHHHHHHHhh
Confidence 999999 8888777 5555444443
No 139
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=98.55 E-value=5.4e-09 Score=109.62 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=71.5
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+.+.+.... +++|+.++.+| .+|++..+||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 17 i~~~l~~~~-----d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 90 (126)
T 3mqm_A 17 ICDGIISYK-----DSSRQALAAPLLNLPPKKKNADYYEKISDPLDLIT-IEKQILTGYYKTVEAFDADMLKVFRNAEKY 90 (126)
T ss_dssp HHHHHHHCB-----CTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----CcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 556677766 66899999999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccccCCccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ .++..|+
T Consensus 91 N~~~s~~~-----~~A~~L~ 105 (126)
T 3mqm_A 91 YGRKSPVG-----RDVCRLR 105 (126)
T ss_dssp HCTTSHHH-----HHHHHHH
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 999999 8887776
No 140
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=98.54 E-value=4e-09 Score=110.35 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=73.5
Q ss_pred cccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000101 1705 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1781 (2239)
Q Consensus 1705 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1781 (2239)
..+.. +.+.+.... +.+|+.++.+| .+|++..+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 18 ~~~~~-il~~l~~~~-----d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 18 QKLNE-VYEAVKNYT-----DKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEK-IRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp HHHHH-HHHHHHHCB-----CTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhHh-----cccCCcccHHhhcCCCccccCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34444 566677766 56899999999 99999999999999999999999 9999999999999999999998
Q ss_pred --------CCCccccCCccccccccc
Q 000101 1782 --------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ .++..|+
T Consensus 91 ~Na~~yN~~~s~i~-----~~A~~L~ 111 (124)
T 3mb4_A 91 NNACTYNEPESLIY-----KDALVLH 111 (124)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 8887776
No 141
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=6.5e-09 Score=108.71 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=74.9
Q ss_pred cccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000101 1705 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1781 (2239)
Q Consensus 1705 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1781 (2239)
..++. +.+.++... +.+||.++.+| .+|++..|||||.+|++||||.+ |..+|+.|+|.++.++..|+.+
T Consensus 16 ~~~~~-il~~l~~~~-----d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 16 KQMNA-IIDTVINYK-----DSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp HHHHH-HHHHHHHCB-----CSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHH-HHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhhh-----cccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 44555 667777776 56899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --------CCCccccCCcccccccccc
Q 000101 1782 --------SGSWTHDRDEGEDEQVLQP 1800 (2239)
Q Consensus 1782 --------~~Sw~~~~~~~~d~~~~~~ 1800 (2239)
++|+++ .++..|+-
T Consensus 89 ~Na~~yN~~~s~i~-----~~A~~L~~ 110 (123)
T 2dat_A 89 HNAQTFNLEGSQIY-----EDSIVLQS 110 (123)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHHH
Confidence 999999 88877773
No 142
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=98.50 E-value=7.1e-09 Score=109.51 Aligned_cols=82 Identities=16% Similarity=0.075 Sum_probs=73.6
Q ss_pred ccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000101 1706 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1781 (2239)
Q Consensus 1706 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1781 (2239)
.+.. +.+.+.+.. +..|+.++.+| .+|++..||+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 21 ~~~~-l~~~l~~~~-----d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~t-I~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (130)
T 3k2j_A 21 QSMQ-LYDTVRSCR-----NNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQ-IRTKLKNQEYETLDHLECDLNLMFE 93 (130)
T ss_dssp HHHH-HHHHHHTCB-----CSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHh-----cccCCCccHhhcCCCChhhCccHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3445 666777777 67899999999 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccc
Q 000101 1782 -------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 -------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ +++..|+
T Consensus 94 Na~~yN~~~s~i~-----~~A~~L~ 113 (130)
T 3k2j_A 94 NAKRYNVPNSAIY-----KRVLKLQ 113 (130)
T ss_dssp HHHHHSCTTSHHH-----HHHHHHH
T ss_pred HHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 8877776
No 143
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=98.49 E-value=8.6e-09 Score=106.64 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=72.1
Q ss_pred cccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----
Q 000101 1707 SENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ---- 1781 (2239)
Q Consensus 1707 ~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~---- 1781 (2239)
+.. +.+.+.... +.+||.++.+| .+|++..+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 10 c~~-il~~l~~~~-----d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 10 CHE-LYNTIRDYK-----DEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMK-IQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp HHH-HHHHHHHCB-----CTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhh-----ccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 344 556677766 56899999999 99999999999999999999999 9999999999999999999988
Q ss_pred ------CCCccccCCccccccccc
Q 000101 1782 ------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 ------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ .++..|+
T Consensus 83 a~~yN~~~s~~~-----~~A~~L~ 101 (116)
T 3iu5_A 83 AKSYYKPDSPEY-----KAACKLW 101 (116)
T ss_dssp HHHHSCTTSHHH-----HHHHHHH
T ss_pred HHHHCCCCCHHH-----HHHHHHH
Confidence 999999 7777666
No 144
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=98.46 E-value=9.2e-09 Score=110.87 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=79.5
Q ss_pred ccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000101 1706 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1781 (2239)
Q Consensus 1706 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1781 (2239)
.++. +++.+++.. ++.+||.++++| .+|++..|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 28 ~~k~-ll~~l~~~~----~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~ 101 (150)
T 3tlp_A 28 RMKI-LFNVVLEAR----EPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKI-IEHNIRNDKYAGEEGMIEDMKLMFR 101 (150)
T ss_dssp HHHH-HHHHHHHCB----CTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHH----hcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3444 667777766 245799999999 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccc-cccccccccccc
Q 000101 1782 -------SGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVR 1811 (2239)
Q Consensus 1782 -------~~Sw~~~~~~~~d~~~~~-~~~~rkr~~~~r 1811 (2239)
++|+++ .++..|+ -+.++-.++...
T Consensus 102 Na~~yN~~~s~i~-----~~A~~L~~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 102 NARHYNEEGSQVY-----NDAHILEKLLKEKRKELGPL 134 (150)
T ss_dssp HHHHHSCTTSHHH-----HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHCCCCCHHH-----HHHHHHHHHHHHHHHHccCC
Confidence 999999 9998888 444444444444
No 145
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=98.35 E-value=3.4e-08 Score=104.13 Aligned_cols=86 Identities=21% Similarity=0.260 Sum_probs=74.0
Q ss_pred cccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000101 1705 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1781 (2239)
Q Consensus 1705 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1781 (2239)
..+.. ++++++... ++.+||.++.+| .+|++..+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 14 ~~~~~-il~~l~~~~----d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 14 KKMKK-IVDAVIKYK----DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp HHHHH-HHHHHHHCB----CTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhcc----cccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHH
Confidence 33445 566677665 234899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --------CCCccccCCccccccccccc
Q 000101 1782 --------SGSWTHDRDEGEDEQVLQPK 1801 (2239)
Q Consensus 1782 --------~~Sw~~~~~~~~d~~~~~~~ 1801 (2239)
+||+++ .++..|+-.
T Consensus 88 ~Na~~yN~~~s~i~-----~~A~~L~~~ 110 (129)
T 2grc_A 88 QNAQTFNLEGSLIY-----EDSIVLQSV 110 (129)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHHHH
Confidence 999999 888777733
No 146
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=98.03 E-value=3.7e-07 Score=93.91 Aligned_cols=65 Identities=15% Similarity=0.030 Sum_probs=59.5
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1797 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1797 (2239)
+..+.+| .+|+...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ +||+++ ..+..
T Consensus 22 ~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~-----~~A~~ 95 (112)
T 3d7c_A 22 HPSAWPFMEPVKKSEAPDYYEVIRFPIDLKT-MTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYC-----RCASA 95 (112)
T ss_dssp SGGGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCCchhhcCCCCcccccCHHHHccCCcCHHH-HHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 3468899 99999999999999999999999 9999999999999999999999 899998 77766
Q ss_pred cc
Q 000101 1798 LQ 1799 (2239)
Q Consensus 1798 ~~ 1799 (2239)
|+
T Consensus 96 L~ 97 (112)
T 3d7c_A 96 LE 97 (112)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 147
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=97.97 E-value=6.6e-07 Score=93.03 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=57.9
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+|+...+||||.+|++||||+. |..+|+.|+|.++.++..|+.+ +||+++ +.+..|
T Consensus 24 ~~~~~F~~PVd~~~~pdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~-----~~A~~L 97 (117)
T 2i7k_A 24 DPSAFFSFPVTDFIAPGYSMIIKHPMDFST-MKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYY-----KAAKKL 97 (117)
T ss_dssp SGGGTSSSCCCTTTSSSHHHHCSCCCCHHH-HHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHH-----HHHHHH
T ss_pred cccHHhcCCCCccccCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 346788 77888899999999999999999 9999999999999999999999 999998 777666
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 98 ~ 98 (117)
T 2i7k_A 98 L 98 (117)
T ss_dssp H
T ss_pred H
Confidence 5
No 148
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=97.97 E-value=5.6e-07 Score=93.92 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=59.9
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1797 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1797 (2239)
+..+.+| .+|+...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ ..+..
T Consensus 28 ~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~ 101 (121)
T 1e6i_A 28 HAAAWPFLQPVNKEEVPDYYDFIKEPMDLST-MEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYY-----KYANR 101 (121)
T ss_dssp STTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCCchhhCCCCChhhCcCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 4578899 99999999999999999999999 9999999999999999999999 899998 77766
Q ss_pred cc
Q 000101 1798 LQ 1799 (2239)
Q Consensus 1798 ~~ 1799 (2239)
|+
T Consensus 102 L~ 103 (121)
T 1e6i_A 102 LE 103 (121)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 149
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=5.3e-07 Score=94.16 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=58.3
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
.+.+| .+|+...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ .++..|+
T Consensus 24 ~~~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 97 (121)
T 2d9e_A 24 TGNIFSEPVPLSEVPDYLDHIKKPMDFFT-MKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFY-----RAAVRLR 97 (121)
T ss_dssp SSCSSSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHHH
T ss_pred ccHhhCCcCCccccCCHHHHcCCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 56889 99999999999999999999999 9999999999999999999999 899999 7776665
No 150
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=97.95 E-value=6.9e-07 Score=92.56 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=58.6
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+|+...+||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ ..+..|
T Consensus 29 ~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L 102 (117)
T 3g0l_A 29 EDAWPFLLPVNLKLVPGYKKVIKKPMDFST-IREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIG-----RAGHNM 102 (117)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHH-----HHHHHH
T ss_pred CCchhhcCcCChhhcCChHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 467899 99999999999999999999999 9999999999999999999988 899988 776665
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 103 ~ 103 (117)
T 3g0l_A 103 R 103 (117)
T ss_dssp H
T ss_pred H
Confidence 5
No 151
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=97.92 E-value=8.1e-07 Score=91.89 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=57.5
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
.+.+| .+|+...+||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ +.+..|+
T Consensus 33 ~s~~F~~pv~~~~~pdY~~~I~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 106 (116)
T 3nxb_A 33 DSWPFLEPVDESYAPNYYQIIKAPMDISS-MEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYT-----KMSDNLE 106 (116)
T ss_dssp TCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH-----HHHHHHH
T ss_pred CcHhhcCcCChhhccChHHHcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 36789 99999999999999999999999 9999999999999999999998 899988 6666555
No 152
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=97.89 E-value=9.9e-07 Score=96.13 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=67.3
Q ss_pred ccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000101 1706 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1781 (2239)
Q Consensus 1706 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1781 (2239)
.+.. .+..++... -..+..+.+| .+|+...||+||.+|++||||+. |..+|+.|.|.++.++..|+.+
T Consensus 29 ~l~~-iL~~i~~~k------l~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~ 100 (158)
T 3uv4_A 29 AFSF-ILDNIVTQK------MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLET-IRKNISKHKYQSRESFLDDVNLILA 100 (158)
T ss_dssp HHHH-HHHHHHHHT------TTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHH------HHcCCCchhhcCcCChhhcccHHHHcCCccCHHH-HHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3344 444466553 2456678899 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccc
Q 000101 1782 -------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 -------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ +++..|.
T Consensus 101 Na~~yN~~~s~i~-----~~A~~L~ 120 (158)
T 3uv4_A 101 NSVKYNGPESQYT-----KTAQEIV 120 (158)
T ss_dssp HHHHHHCTTCHHH-----HHHHHHH
T ss_pred HHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 7776555
No 153
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=97.89 E-value=9.8e-07 Score=93.60 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=58.0
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C-CCccccCCcccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~-~Sw~~~~~~~~d~~~~ 1798 (2239)
.+.+| .+|+...|||||.+|++||||+. |..+|+.|+|.++.++..|+.+ + ||+|+ +++..|
T Consensus 38 ~s~~F~~pv~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~-----~~A~~L 111 (135)
T 3mb3_A 38 DSEPFRQPVDLLEYPDYRDIIDTPMDFAT-VRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIY-----SMSLRL 111 (135)
T ss_dssp GGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTCHHH-----HHHHHH
T ss_pred CChhhcCCCChhhCCCHHHHhCCCcCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 37899 99999999999999999999999 9999999999999999999998 6 89999 777666
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 112 ~ 112 (135)
T 3mb3_A 112 S 112 (135)
T ss_dssp H
T ss_pred H
Confidence 5
No 154
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=97.87 E-value=1.1e-06 Score=92.05 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=57.4
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
.+.+| .+|+...+||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ +++..|.
T Consensus 30 ~~~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 103 (123)
T 3hme_A 30 PHGFFAFPVTDAIAPGYSMIIKHPMDFGT-MKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYY-----KLAKKIL 103 (123)
T ss_dssp TTCSSSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHHH
T ss_pred ccHhhcCCCChhhccCHHHHCCCCCCHHH-HHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 45689 88899999999999999999999 9999999999999999999988 999998 7776555
No 155
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=97.86 E-value=1.2e-06 Score=91.50 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=57.9
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C-CCccccCCcccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~-~Sw~~~~~~~~d~~~~ 1798 (2239)
.+.+| .+|+...|||||.+|++||||+. |..+|+.|.|.++.++..|+.+ + +|+++ .++..|
T Consensus 27 ~s~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~-----~~A~~L 100 (123)
T 3q2e_A 27 DSEPFRQPVDLVEYPDYRDIIDTPMDFGT-VRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIY-----SMTLRL 100 (123)
T ss_dssp GGGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTSHHH-----HHHHHH
T ss_pred CcHhhcCCCChhhcCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 47899 99999999999999999999999 9999999999999999999998 5 89998 777666
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 101 ~ 101 (123)
T 3q2e_A 101 S 101 (123)
T ss_dssp H
T ss_pred H
Confidence 6
No 156
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=97.84 E-value=1.3e-06 Score=91.84 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=58.1
Q ss_pred ccccccc-CCCCc--ccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccc
Q 000101 1729 RRLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1795 (2239)
Q Consensus 1729 r~l~~~f-~lps~--~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1795 (2239)
+..+.+| ..++. ..+||||.+|++||||+. |..+|+.|+|.++.++..|+.+ +||+++ ..+
T Consensus 36 ~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~A 109 (127)
T 2oss_A 36 HQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGT-IKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV-----LMA 109 (127)
T ss_dssp STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHH-----HHH
T ss_pred CccchhhcCCCChhhccCccHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 4578899 77774 589999999999999999 9999999999999999999999 899999 777
Q ss_pred cccc
Q 000101 1796 QVLQ 1799 (2239)
Q Consensus 1796 ~~~~ 1799 (2239)
..|+
T Consensus 110 ~~L~ 113 (127)
T 2oss_A 110 EALE 113 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 157
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=97.82 E-value=1.5e-06 Score=92.25 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=59.2
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1797 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1797 (2239)
+..+.+| .+|+...|||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ +++..
T Consensus 28 ~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~ 101 (135)
T 3rcw_A 28 KDPARIFAQPVSLKEVPDYLDHIKHPMDFAT-MRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFY-----RAAVR 101 (135)
T ss_dssp TCTTCSSSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCcchhhcCCCChhhcCCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 3457889 99999999999999999999999 9999999999999999999998 999999 77766
Q ss_pred cc
Q 000101 1798 LQ 1799 (2239)
Q Consensus 1798 ~~ 1799 (2239)
|+
T Consensus 102 L~ 103 (135)
T 3rcw_A 102 LR 103 (135)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 158
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=97.78 E-value=1.2e-06 Score=91.16 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=60.3
Q ss_pred CCccccccc-CCCCccc--ccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000101 1727 NSRRLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1793 (2239)
Q Consensus 1727 ~~r~l~~~f-~lps~~~--~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1793 (2239)
+.+.++.+| .+|+... |||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ .
T Consensus 25 ~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~ 98 (120)
T 3jvl_A 25 KHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMST-IKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVV-----A 98 (120)
T ss_dssp GGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----H
T ss_pred cCccccchhcCCCCchhcCCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----H
Confidence 344567889 8889888 9999999999999999 9999999999999999999988 899999 7
Q ss_pred cccccc
Q 000101 1794 DEQVLQ 1799 (2239)
Q Consensus 1794 d~~~~~ 1799 (2239)
.+..|+
T Consensus 99 ~A~~L~ 104 (120)
T 3jvl_A 99 MARKLQ 104 (120)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
No 159
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=97.77 E-value=2.9e-06 Score=89.58 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=49.1
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1781 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1781 (2239)
+..+.+| .+|+...|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 25 ~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~l 77 (130)
T 3dai_A 25 DKRFRVFTKPVDPDEVPDYVTVIKQPMDLSS-VISKIDLHKYLTVKDYLRDIDL 77 (130)
T ss_dssp SGGGGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHH
T ss_pred CCccHhhcCCCChhhcCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 4457899 99999999999999999999999 9999999999999999999998
No 160
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=97.77 E-value=1.7e-06 Score=91.42 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=56.8
Q ss_pred cccccc-CCCCccc--ccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccc
Q 000101 1730 RLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1796 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~--~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1796 (2239)
.++.+| .+|+... +||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ ..+.
T Consensus 41 ~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~-----~~A~ 114 (130)
T 2ouo_A 41 AYAWPFYKPVDVEALGLHDYCDIIKHPMDMST-IKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVV-----AMAR 114 (130)
T ss_dssp HHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHH
T ss_pred hhHHHhcCCCChhhccCCcHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHHH
Confidence 467889 7777654 9999999999999999 9999999999999999999999 899999 7776
Q ss_pred ccc
Q 000101 1797 VLQ 1799 (2239)
Q Consensus 1797 ~~~ 1799 (2239)
.|+
T Consensus 115 ~L~ 117 (130)
T 2ouo_A 115 KLQ 117 (130)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 161
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.76 E-value=1.6e-06 Score=95.19 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=59.9
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1797 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1797 (2239)
+..+.+| .+|+...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ ..+..
T Consensus 87 ~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~ 160 (174)
T 2ri7_A 87 HKMAWPFLEPVDPNDAPDYYGVIKEPMDLAT-MEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFY-----QCAEV 160 (174)
T ss_dssp SGGGTTTSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred hhhhhhhhcCCCcccCCchHHHhCCcCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 5578899 88999999999999999999999 9999999999999999999999 899998 77777
Q ss_pred cc
Q 000101 1798 LQ 1799 (2239)
Q Consensus 1798 ~~ 1799 (2239)
|+
T Consensus 161 L~ 162 (174)
T 2ri7_A 161 LE 162 (174)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 162
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=97.75 E-value=2e-06 Score=89.41 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=57.7
Q ss_pred ccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccc
Q 000101 1729 RRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1795 (2239)
Q Consensus 1729 r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1795 (2239)
+..+.+| .+++.. .+||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ +.+
T Consensus 27 ~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A 100 (119)
T 3p1f_A 27 DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLST-IKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVY-----KFC 100 (119)
T ss_dssp TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred CCCCchhcCCCCchhccCCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 4567889 777877 69999999999999999 9999999999999999999998 999998 776
Q ss_pred cccc
Q 000101 1796 QVLQ 1799 (2239)
Q Consensus 1796 ~~~~ 1799 (2239)
..|+
T Consensus 101 ~~L~ 104 (119)
T 3p1f_A 101 SKLA 104 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 163
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=97.73 E-value=2.6e-06 Score=92.49 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=64.4
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ------ 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~------ 1781 (2239)
+...+++.- .....+.+| .+|+.. .|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 36 ~~~~il~~l-------~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 36 LHKVVMKAL-------WKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGT-IKRRLENNYYWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp HHHTHHHHH-------HTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 444455554 234678899 888877 59999999999999999 9999999999999999999998
Q ss_pred ----CCCccccCCccccccccc
Q 000101 1782 ----SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 ----~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+|+ .++..|+
T Consensus 108 ~YN~~~s~i~-----~~A~~L~ 124 (154)
T 4alg_A 108 IYNKPTDDIV-----LMAQTLE 124 (154)
T ss_dssp HHSCTTSHHH-----HHHHHHH
T ss_pred HHCCCCCHHH-----HHHHHHH
Confidence 999999 8887777
No 164
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=97.52 E-value=6.5e-06 Score=90.38 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=54.9
Q ss_pred ccccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccc
Q 000101 1729 RRLTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1795 (2239)
Q Consensus 1729 r~l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1795 (2239)
...+.+| .+++ +..||+||.+|++||||+. |..+|+.|.|.++.++..|+.+ ++|+|+ ..+
T Consensus 36 ~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~-----~~A 109 (166)
T 3fkm_X 36 YEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSC-IKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVA-----ITG 109 (166)
T ss_dssp STTGGGGSSCCC-----CCCGGGCCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTTSHHH-----HHH
T ss_pred CCCChhhcCCCChhhccCCCHHHhcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 3456788 7755 4569999999999999999 9999999999999999999998 999999 777
Q ss_pred cccc
Q 000101 1796 QVLQ 1799 (2239)
Q Consensus 1796 ~~~~ 1799 (2239)
..|+
T Consensus 110 ~~L~ 113 (166)
T 3fkm_X 110 KNIE 113 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 165
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=97.50 E-value=8.8e-06 Score=86.52 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=57.6
Q ss_pred cccccccCCCCcccccchhhhhcCCCCcccccchhhcc--CccccccccccccCC----------CCCccccCCcccccc
Q 000101 1729 RRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1796 (2239)
Q Consensus 1729 r~l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~lee--g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1796 (2239)
+..+.+|.-|....+||||.+|++||||.. |..+|+. |+|.++.++..|+.+ ++|+++ .++.
T Consensus 35 ~~~s~~F~~Pv~~~~pdY~~iIk~PmDL~t-I~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~-----~~A~ 108 (135)
T 2yyn_A 35 HEMSLAFQDPVPLTVPDYYKIIKNPMDLST-IKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVA-----NAGI 108 (135)
T ss_dssp SGGGGGGSSCCCTTSTTHHHHCSSCCCHHH-HHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHH
T ss_pred CccchhhcCCCcccCCCHHHHcCCCCCHHH-HHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 467889933545589999999999999999 9999998 699999999999999 999999 8887
Q ss_pred cccc
Q 000101 1797 VLQP 1800 (2239)
Q Consensus 1797 ~~~~ 1800 (2239)
.|+-
T Consensus 109 ~L~~ 112 (135)
T 2yyn_A 109 KLEN 112 (135)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7773
No 166
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=2.2e-05 Score=83.26 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=47.6
Q ss_pred ccccccCCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1730 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1730 ~l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
..+.+|.-| +||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++
T Consensus 28 ~~~~~F~~P----~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~ 90 (131)
T 2dkw_A 28 KRFNIFSKP----VSDYLEVIKEPMDLST-VITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGD 90 (131)
T ss_dssp GGGCTTSSC----CSSCTTSCSSCCCHHH-HHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTH
T ss_pred ccchhhcCc----CccHHhHcCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhH
Confidence 356788446 9999999999999999 9999999999999999999999 888763
No 167
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.32 E-value=0.0018 Score=84.26 Aligned_cols=151 Identities=21% Similarity=0.159 Sum_probs=94.9
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
...|-+.|.++|..++. ...-.|+.-..|+|||.+.+.+|.+++.. ..++||++|+. .+.+....+......
T Consensus 187 ~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~~~~- 259 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALCKQR- 259 (646)
T ss_dssp STTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHTTCC-
T ss_pred CCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhcCCc-
Confidence 34799999999998875 22235888899999999999999888752 35899999987 566666666554321
Q ss_pred ceEEEecchhh--------------------------------------------------------HHHHH------HH
Q 000101 1077 SCIYYVGAKDQ--------------------------------------------------------RSRLF------SQ 1094 (2239)
Q Consensus 1077 kvvvy~Gskd~--------------------------------------------------------Rk~l~------~~ 1094 (2239)
++-.|.... ++.+. ..
T Consensus 260 --ilRlG~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 337 (646)
T 4b3f_X 260 --ILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAML 337 (646)
T ss_dssp --EEECSCCSSCCHHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred --eEEecchhhhhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111221100 00000 00
Q ss_pred HhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCC
Q 000101 1095 VAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1162 (2239)
Q Consensus 1095 i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQN 1162 (2239)
......+|+++|....... ...+....|++||||||-.+..+ ..+..+....+++|-|-|.|-
T Consensus 338 ~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~-----~~lipL~~~~~~ILVGD~~QL 402 (646)
T 4b3f_X 338 ESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEA-----SCWIPLLKARKCILAGDHKQL 402 (646)
T ss_dssp HHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHH-----HHTTTGGGSSEEEEEECTTSC
T ss_pred HHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchH-----HHHhhccccceEEEcCCcccc
Confidence 1123457888776554332 23456678999999998665332 233334445678889988663
No 168
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.21 E-value=2.9e-05 Score=87.83 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=50.6
Q ss_pred cccccccCCCCcccccchhhhhcCCCCcccccchhhcc---CccccccccccccCC----------CCCccccCCccccc
Q 000101 1729 RRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE---GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1795 (2239)
Q Consensus 1729 r~l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~lee---g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1795 (2239)
+..+.+|.-|....||+||.+|++||||++ |..+|+. |+|.++.++..|+.+ ++|+|+ .++
T Consensus 96 ~~~s~~F~~Pv~~~~pdY~~iIk~PmdL~t-I~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~v~-----~~A 169 (207)
T 3u5n_A 96 HELSIEFQEPVPASIPNYYKIIKKPMDLST-VKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQ-----VYA 169 (207)
T ss_dssp STTCGGGSSCCCTTSTTHHHHCSSCCCHHH-HHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccchhhhhccCChhhccHhHHhCCccCHHH-HHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcchHH-----HHH
Confidence 346788833444589999999999999999 9999997 899999999999999 788888 666
Q ss_pred cccc
Q 000101 1796 QVLQ 1799 (2239)
Q Consensus 1796 ~~~~ 1799 (2239)
.++.
T Consensus 170 ~~l~ 173 (207)
T 3u5n_A 170 DTQE 173 (207)
T ss_dssp ----
T ss_pred HHHH
Confidence 5544
No 169
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=97.19 E-value=2.2e-05 Score=87.16 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=53.8
Q ss_pred cccccCCCCcccccchhhhhcCCCCcccccchhhcc--CccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1731 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1731 l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~lee--g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
.+.+|.-|....+|+||.+|++||||+. |..+|+. |.|.++.++..|+.+ ++|+++ ..+..|
T Consensus 98 ~s~~F~~Pv~~~~pdY~~iIk~PmdL~t-I~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~v~-----~~a~~L 171 (184)
T 3o36_A 98 MSLAFQDPVPLTVPDYYKIIKNPMDLST-IKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVA-----NAGIKL 171 (184)
T ss_dssp TCHHHHSCCCTTSTTHHHHCSSCCCHHH-HHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTCHHH-----HHHHHH
T ss_pred hhhhhccccccCCCchhhhcCCCCCHHH-HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 4678833444679999999999999999 9999998 899999999999998 889888 766665
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 172 ~ 172 (184)
T 3o36_A 172 E 172 (184)
T ss_dssp H
T ss_pred H
Confidence 5
No 170
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.04 E-value=0.005 Score=79.95 Aligned_cols=148 Identities=20% Similarity=0.308 Sum_probs=92.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaPslkv 1078 (2239)
.|-+.|.+++..++. +...++....|+|||.++..++..+.. ....++||++|+.. +.+....+.+.. +.+
T Consensus 180 ~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~~--~~~ 251 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQTG--LKV 251 (624)
T ss_dssp CCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHT--SSSCCEEEEESSHHHHHHHHHHHHTTT--CCE
T ss_pred CCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCcHHHHHHHHHHHHhcC--CeE
Confidence 689999999988764 344688889999999998888877763 24568999999874 455555555431 111
Q ss_pred EEEecchh------------------------------------------hHHHHH------HHHhhcCccEEEEehhHH
Q 000101 1079 IYYVGAKD------------------------------------------QRSRLF------SQVAALKFNVLVTTYEFI 1110 (2239)
Q Consensus 1079 vvy~Gskd------------------------------------------~Rk~l~------~~i~~~kfdVVITTYE~L 1110 (2239)
+ -.|... ..+.+. ........+||++|...+
T Consensus 252 ~-R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 252 V-RLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp E-ECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred E-eeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 1 111100 000000 011134678999987665
Q ss_pred HHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCC
Q 000101 1111 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1162 (2239)
Q Consensus 1111 ~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQN 1162 (2239)
.. ..+....|++||||||..+..+.+ + +.-+....+++|-|-|.|-
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred cc--hhhhcCCCCEEEEecccccCcHHH-H---HHHHhcCCeEEEecChhcc
Confidence 32 345567899999999976654432 1 1112234588888988663
No 171
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.93 E-value=0.0049 Score=76.98 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=49.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 1063 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~l-nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs 1063 (2239)
..|-+-|.+++..++.....+. ..+|....|+|||..+..++.++... + ...+++++|+....
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~-~-~~~il~~a~T~~Aa 87 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST-G-ETGIILAAPTHAAK 87 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT-T-CCCEEEEESSHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-C-CceEEEecCcHHHH
Confidence 3699999999998876554444 66888999999999888888888753 2 24789999987654
No 172
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0078 Score=80.41 Aligned_cols=146 Identities=19% Similarity=0.270 Sum_probs=92.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaPslkv 1078 (2239)
.|-+.|.+++..++. +...++....|+|||.++..++.++... ...++||++|+.. +.+....+.+.. +.+
T Consensus 360 ~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~g--~~i 431 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDLG--LKV 431 (802)
T ss_dssp CCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHTT--CCE
T ss_pred cCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhhC--ccE
Confidence 689999999988764 3346888899999999998888887753 2358999999874 555656566542 121
Q ss_pred EEEecchh-----------------------------------------hHHHHH------HHHhhcCccEEEEehhHHH
Q 000101 1079 IYYVGAKD-----------------------------------------QRSRLF------SQVAALKFNVLVTTYEFIM 1111 (2239)
Q Consensus 1079 vvy~Gskd-----------------------------------------~Rk~l~------~~i~~~kfdVVITTYE~L~ 1111 (2239)
+ -.|... ..+.+. ........+||++|...+.
T Consensus 432 l-R~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 432 V-RLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp E-ECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred E-eecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 1 111100 000000 0111246689999987664
Q ss_pred HhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCC
Q 000101 1112 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1112 kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
. ..+.. .|++||||||..+..... + +..+....+++|-|-|.|
T Consensus 511 ~--~~L~~-~fd~viIDEA~q~~e~~~-l---i~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 511 D--KRLDT-KFRTVLIDESTQASEPEC-L---IPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp C--TTCCS-CCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTS
T ss_pred h--HHHhc-cCCEEEEECccccchHHH-H---HHHHhCCCEEEEEeCccc
Confidence 2 23444 899999999988754321 2 222233468888898866
No 173
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.77 E-value=0.0053 Score=79.12 Aligned_cols=126 Identities=18% Similarity=0.145 Sum_probs=82.6
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCc
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslk 1077 (2239)
+..|-+.|..++..++. +...+|.-..|+|||.++.+++..+.. ...++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAES---LGLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEecCcHHHHHHhHhhhc----cc
Confidence 45788999999998874 556788999999999888777766654 23588999998876655444211 00
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHH------hhhhcccCCceEEEecccccccChhhHHHHHhhccccce
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMY------DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR 1151 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~k------D~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~r 1151 (2239)
..|...+.. ....-....+++|||||++.+-. ..+...+..+....
T Consensus 256 --------------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~ 307 (574)
T 3e1s_A 256 --------------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGA 307 (574)
T ss_dssp --------------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTC
T ss_pred --------------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCC
Confidence 011111110 00111234789999999998842 23444455667778
Q ss_pred EEEecCCCCCC
Q 000101 1152 RLLLTGTPLQN 1162 (2239)
Q Consensus 1152 RLLLTGTPIQN 1162 (2239)
+++|.|-|-|.
T Consensus 308 ~lilvGD~~QL 318 (574)
T 3e1s_A 308 RVLLVGDTDQL 318 (574)
T ss_dssp EEEEEECTTSC
T ss_pred EEEEEeccccc
Confidence 99999999774
No 174
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.74 E-value=0.0078 Score=80.38 Aligned_cols=149 Identities=20% Similarity=0.308 Sum_probs=92.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaPslk 1077 (2239)
..|-+.|.+++..++. +...++....|+|||.++..++..+... ...++||++|+.. +.+....+.+.. +.
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~g--~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHhC--cc
Confidence 3689999999988764 3346888999999999988888777632 3468999999874 444545454421 12
Q ss_pred eEEEecchhh------------------------HHHH-----------------H-------HHHhhcCccEEEEehhH
Q 000101 1078 CIYYVGAKDQ------------------------RSRL-----------------F-------SQVAALKFNVLVTTYEF 1109 (2239)
Q Consensus 1078 vvvy~Gskd~------------------------Rk~l-----------------~-------~~i~~~kfdVVITTYE~ 1109 (2239)
+ +-.|.... .+.+ + ........+||++|...
T Consensus 427 v-vRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~ 505 (800)
T 2wjy_A 427 V-VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG 505 (800)
T ss_dssp E-EECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGG
T ss_pred e-EeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhh
Confidence 1 11111100 0000 0 00112356899998766
Q ss_pred HHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCC
Q 000101 1110 IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1162 (2239)
Q Consensus 1110 L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQN 1162 (2239)
+.. ..+....|++||||||..+..+.. + +..+....+++|-|-|.|-
T Consensus 506 ~~~--~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 506 AGD--PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp GGC--TTTTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred hCC--hhhhcCCCCEEEEECCCCCCcHHH-H---HHHHhcCCeEEEecccccC
Confidence 542 235567899999999976644331 1 2222334688898988663
No 175
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.44 E-value=0.0088 Score=77.52 Aligned_cols=145 Identities=18% Similarity=0.202 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHH-HHHHHHHHHHCCCCce-
Q 000101 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVL-VNWKSELHKWLPSVSC- 1078 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-~~~GP~LIVVP~SLL-sQW~~Ef~KwaPslkv- 1078 (2239)
-+.|..++..++. +...++.-..|+|||.++..++..+.... ....+++|++|+... .+....+..+...+.+
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 4789999987764 55678999999999987777776665421 233478999998754 4444444433211100
Q ss_pred -EEEecchhhHHHHHHHHhhcCcc-EEEEehhH--HHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEE
Q 000101 1079 -IYYVGAKDQRSRLFSQVAALKFN-VLVTTYEF--IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLL 1154 (2239)
Q Consensus 1079 -vvy~Gskd~Rk~l~~~i~~~kfd-VVITTYE~--L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLL 1154 (2239)
....+... .....+ ++-++... +... ......+++||||||+.+- ...+...+..+....+++
T Consensus 227 ~~~~~~~~~---------~~~Tih~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 227 DEQKKRIPE---------DASTLHRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHARVI 293 (608)
T ss_dssp SCCCCSCSC---------CCBTTTSCC-----------C--TTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEE
T ss_pred HHHHhccch---------hhhhhHhhhccCCCchHHHhc--cCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCCEEE
Confidence 00000000 000011 11111111 1111 1122378999999999553 233455566777778999
Q ss_pred ecCCCCCCC
Q 000101 1155 LTGTPLQND 1163 (2239)
Q Consensus 1155 LTGTPIQNn 1163 (2239)
|.|-|-|-.
T Consensus 294 LvGD~~QL~ 302 (608)
T 1w36_D 294 FLGDRDQLA 302 (608)
T ss_dssp EEECTTSGG
T ss_pred EEcchhhcC
Confidence 999987654
No 176
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.89 E-value=0.22 Score=64.13 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
.|-+.|.++|.. . ....++-...|+|||.+.+.-+.+++...+ ....+|+|+++. ...+....+.+.+
T Consensus 9 ~Ln~~Q~~av~~-----~-~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVAA-----P-RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHTC-----C-SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC-----C-CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 689999999961 1 334566677999999999999999986433 334689999866 4555666666654
No 177
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.30 E-value=0.08 Score=65.27 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=88.6
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---P 1074 (2239)
..|.|||...+..+.. ....++.-.-+.|||..+.+++++.... .....+++++|+. ....+...+..++ |
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 4899999998876632 2336777789999999888877765532 2334688888876 3444446666553 4
Q ss_pred C-CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhh-ccc--cc
Q 000101 1075 S-VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYR--CQ 1150 (2239)
Q Consensus 1075 s-lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk-~Lk--a~ 1150 (2239)
. +...+...+.. +.. +. .+..+.+.+- +...+.....+++||||+|.+.+. ..++.++. .+. ..
T Consensus 237 ~ll~~~~~~~~~~-~I~----f~-nGs~i~~lsa-----~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~~ 304 (385)
T 2o0j_A 237 DFLQPGIVEWNKG-SIE----LD-NGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGRR 304 (385)
T ss_dssp TTTSCCEEEECSS-EEE----ET-TSCEEEEEEC-----SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTTC
T ss_pred HhhhhhhccCCcc-EEE----eC-CCCEEEEEEC-----CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCCC
Confidence 3 21111111100 000 11 1122222221 223455667899999999999863 23344443 222 34
Q ss_pred eEEEecCCCCCCCHHHHHHHHhh
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNL 1173 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnF 1173 (2239)
.+++++.||-..+ .+|.+...
T Consensus 305 ~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 305 SKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp CEEEEEECCCSSS--HHHHHHHH
T ss_pred CcEEEEeCCCCch--hHHHHHHH
Confidence 6788888886553 55555543
No 178
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.13 E-value=0.034 Score=61.49 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=25.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~ 1059 (2239)
.++.-.||+|||..++.++..+.. ...+++|+.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~---~g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL---GKKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---TTCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeec
Confidence 467889999999888777765543 22467888776
No 179
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=94.75 E-value=0.0021 Score=71.95 Aligned_cols=60 Identities=13% Similarity=0.044 Sum_probs=50.9
Q ss_pred cccccc-CCCCcccccchhhhhc--CCCCcccccchhhccC---ccccccccccccCC---------CCCccccCCcccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEA--RPGSLSKRMPDELEEG---EIAVSGDSHMDHQQ---------SGSWTHDRDEGED 1794 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~--~P~dl~~~i~~~leeg---~ya~~~d~~~D~~~---------~~Sw~~~~~~~~d 1794 (2239)
..+.+| .+|+ |+||.+|+ +||||++ |..+|+.| +|.+..++..|+.+ +++.++ ..
T Consensus 92 ~~s~pF~~pV~----~~Yy~iIk~~~PMDL~t-Ik~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN~~s~~~-----~~ 161 (189)
T 2ro1_A 92 EPCRPLHQLAT----DSTFSLDQPGGTLDLTL-IRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADV-----QS 161 (189)
T ss_dssp TTHHHHHSCSC----CTTCSSSCSSCCCCHHH-HHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHCCSSCSS-----HH
T ss_pred ccchhhcCCCC----hhhhccccCCCcccHHH-HHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHCCCCHHH-----HH
Confidence 357788 6666 89999998 7999999 99999999 99999999999999 666666 66
Q ss_pred ccccc
Q 000101 1795 EQVLQ 1799 (2239)
Q Consensus 1795 ~~~~~ 1799 (2239)
+..|+
T Consensus 162 a~~L~ 166 (189)
T 2ro1_A 162 IIGLQ 166 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66666
No 180
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.46 E-value=0.064 Score=61.53 Aligned_cols=112 Identities=21% Similarity=0.103 Sum_probs=58.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhc
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
+.-.++.-+||+|||..++.++..+.. ....++|+.|.---. .+ ...+..+ |- .
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d~r---~~-~~i~srl------G~-------------~ 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKIDTR---SI-RNIQSRT------GT-------------S 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCCGG---GC-SSCCCCC------CC-------------S
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccCch---HH-HHHHHhc------CC-------------C
Confidence 333477899999999888888766653 234678776643100 00 0001000 10 0
Q ss_pred CccEEEEehhHHHHhh-hhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCC
Q 000101 1099 KFNVLVTTYEFIMYDR-SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~-s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
...+.+.+...+.... ..+....+++|||||+|.+....-.....|.. ....++|+|-
T Consensus 66 ~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl 124 (223)
T 2b8t_A 66 LPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGL 124 (223)
T ss_dssp SCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECC
T ss_pred ccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEec
Confidence 0112233333333222 22333468999999999875432222222222 2567888886
No 181
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.33 E-value=0.27 Score=63.55 Aligned_cols=147 Identities=15% Similarity=0.072 Sum_probs=84.8
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC-
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV- 1076 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl- 1076 (2239)
..|.|||...+..+. . ....++.-.=|.|||..+.+++++.+... ....++++.|+. ....+...+..++-..
T Consensus 162 ~~l~p~Q~~i~~~l~---~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS---S-KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCCHHHHHHHHHHH---H-CSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CcCCHHHHHHHHhhc---c-ccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 479999999887662 1 33467777899999998877777665432 234688888865 4445556666664221
Q ss_pred ---ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhc-cc--cc
Q 000101 1077 ---SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YR--CQ 1150 (2239)
Q Consensus 1077 ---kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~-Lk--a~ 1150 (2239)
.......+... .. + ..+..|.+.+ .+...+.....+++||||+|.+.+.. .++.++.. +. ..
T Consensus 237 ~~~~~~~~~~~~~~-i~----~-~nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~~ 304 (592)
T 3cpe_A 237 DFLQPGIVEWNKGS-IE----L-DNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRR 304 (592)
T ss_dssp TTTSCCEEEECSSE-EE----E-TTSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSSC
T ss_pred HhhccccccCCccE-EE----e-cCCCEEEEEe-----CCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccCCC
Confidence 11111001000 00 0 0122222222 11233445578999999999997742 44444443 22 34
Q ss_pred eEEEecCCCCCC
Q 000101 1151 RRLLLTGTPLQN 1162 (2239)
Q Consensus 1151 rRLLLTGTPIQN 1162 (2239)
.++++++||-..
T Consensus 305 ~~ii~isTP~~~ 316 (592)
T 3cpe_A 305 SKIIITTTPNGL 316 (592)
T ss_dssp CEEEEEECCCTT
T ss_pred ceEEEEeCCCCc
Confidence 688888999554
No 182
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.43 E-value=0.27 Score=56.24 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=26.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S 1060 (2239)
++.-.||+|||..++.++..+.. ....+||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~---~g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQF---AKQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEecc
Confidence 46899999999888887765543 345788888754
No 183
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.32 E-value=0.097 Score=65.64 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=68.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCc
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKF 1100 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kf 1100 (2239)
.++...-|+|||-....++. ..+.|||+|+. +...|.+.+.+.. .. ..-
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~----------~~------------~~~ 213 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASG----------II------------VAT 213 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTS----------CC------------CCC
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcC----------cc------------ccc
Confidence 36778899999976655441 25789999977 6777888774320 00 011
Q ss_pred cEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCC
Q 000101 1101 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1162 (2239)
Q Consensus 1101 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQN 1162 (2239)
++-|.|++.+...........+++|||||+..+- ...+...+..+.+ .+++|.|-|-|-
T Consensus 214 ~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 214 KDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp TTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred cceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcccc
Confidence 2347788877654443333458999999998652 2333333333444 789999988653
No 184
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.03 E-value=0.28 Score=54.91 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=26.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~ 1059 (2239)
.++.-.||+|||..++.++..+.. ....++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEec
Confidence 367889999999888877766543 33578888876
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.94 E-value=0.55 Score=55.41 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=56.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcC
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALK 1099 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~k 1099 (2239)
.+.+|.-+.|+|||..+-++...+... ..+++.|....+...+...+... .
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~-----------~--------------- 88 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVEHLKKG-----------T--------------- 88 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHHHHHHT-----------C---------------
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHHHHHHcC-----------c---------------
Confidence 456899999999998887777666532 34556555444544444443220 0
Q ss_pred ccEEEEehhHHHHhhhhcccCCceEEEecccccccC---hhhHHHHHhhcc-ccceEEEecCC
Q 000101 1100 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD---RESVLARDLDRY-RCQRRLLLTGT 1158 (2239)
Q Consensus 1100 fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN---~~SKlskaLk~L-ka~rRLLLTGT 1158 (2239)
.+.+.. .+ ...++|||||+|.+.. ....+...+..+ ....++++|+|
T Consensus 89 -------~~~~~~---~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 89 -------INEFRN---MY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp -------HHHHHH---HH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred -------HHHHHH---Hh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 000110 11 1367999999999864 223344444433 34457888776
No 186
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.83 E-value=0.21 Score=59.74 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHH
Q 000101 1001 LRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Li 1044 (2239)
++|+|.+.+..+...+.++. + -+|.-+.|+|||..+.++...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 57889999888887765543 2 48899999999999988887765
No 187
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.61 E-value=0.12 Score=60.07 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=27.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEechHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPNAV 1061 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~-~GP~LIVVP~SL 1061 (2239)
.+.+|.-+.|+|||..+-++...+...... .++++.|.+..+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 346899999999999988777766542211 235555544433
No 188
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.31 E-value=0.51 Score=54.69 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=25.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S 1060 (2239)
++.-.||+|||..+|..+.... .....+||+-|.-
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~~ 57 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYAK 57 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEETT
T ss_pred EEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeecC
Confidence 6788999999988777665443 3445788887753
No 189
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.23 E-value=0.64 Score=50.12 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=26.1
Q ss_pred CCceEEEecccccccCh-hhHHHHHhhccccceEEEecCCC
Q 000101 1120 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN~-~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
....+|||||+|.+... ...+...+.......++++|+..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 46789999999998532 23344455555556677776654
No 190
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.65 E-value=0.44 Score=56.11 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=28.8
Q ss_pred CceEEEeccccccc--ChhhHHHHHhhccccceEEEecCCCCC
Q 000101 1121 DWKYIIIDEAQRMK--DRESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1121 kWd~VIIDEAHrIK--N~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
...+|||||+|.+. .....+.+.+..+....++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 67899999999995 233445555666666778888777643
No 191
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.19 E-value=1.1 Score=47.19 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
.+.+|.-+.|+|||..+-+++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999888777766543
No 192
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.82 E-value=1.6 Score=47.34 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~L 1043 (2239)
++..+..+...+..-......+|.-+.|+|||..+-.+...+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 444555554444321111245899999999998776665544
No 193
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.79 E-value=2.9 Score=44.98 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHhhc-----CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~-----n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef 1069 (2239)
.+.|..++..+..... .+.+.+|.-+.|+|||..+-+++..+....+ ..++++.-..++..+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g--~~~~~~~~~~~~~~~~~~~ 86 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG--IRGYFFDTKDLIFRLKHLM 86 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC--CCCCEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC--CeEEEEEHHHHHHHHHHHh
Confidence 3568888887776553 3455688899999999888777766653332 2444444444554444333
No 194
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.54 E-value=0.63 Score=55.48 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=25.6
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
+|.+|||||+|+|.. ....+.+.|.......+++|+.+
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~ 120 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 689999999999953 22235555666555666666543
No 195
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.52 E-value=0.54 Score=55.78 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=27.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~ 1066 (2239)
.+.||.-+.|+|||..+-++...+ ..+++.|....++..|.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWM 92 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHTTTG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhhccc
Confidence 356899999999998887776543 23555555555544443
No 196
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.43 E-value=1.1 Score=47.32 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=20.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
..+.+|.-+.|+|||..+-++...+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34568899999999988877766654
No 197
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.38 E-value=0.57 Score=55.25 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=26.8
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
.+.+|||||+|++.. ....+.+.+.......+++++++.
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 578999999999853 234456666666666677776554
No 198
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.10 E-value=0.69 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=18.6
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 000101 1018 NKLNGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa 1041 (2239)
...+.+|.-+.|+|||..+-++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345568999999999988766654
No 199
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.63 E-value=0.54 Score=56.90 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=25.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL 1062 (2239)
.+.||.-+.|+|||..+-++...+ ..+++.|....++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLV 121 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeHHHHh
Confidence 456899999999999887776654 2355555444444
No 200
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.51 E-value=0.98 Score=49.78 Aligned_cols=37 Identities=16% Similarity=-0.074 Sum_probs=24.8
Q ss_pred HHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1008 GLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1008 GLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
.+.++..... .+.+.+|.-+.|+|||..+-++...+.
T Consensus 39 ~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 39 LIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp HHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444443333 345568999999999988877766554
No 201
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.27 E-value=1.6 Score=54.49 Aligned_cols=101 Identities=13% Similarity=0.195 Sum_probs=56.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcC
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALK 1099 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~k 1099 (2239)
.+.+|.-+.|+|||..+-++..++... ....+++.|....+...+...+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~~~~~~~~~~~~~--------------------------- 182 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKFLNDLVDSMKEG--------------------------- 182 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHHHHHHHHHHHHTT---------------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHHHHHHHHHHcc---------------------------
Confidence 356899999999998887777666543 2233555554444444333333210
Q ss_pred ccEEEEehhHHHHhhhhcccCCceEEEecccccccCh---hhHHHHHhhcc-ccceEEEecCC
Q 000101 1100 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGT 1158 (2239)
Q Consensus 1100 fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~---~SKlskaLk~L-ka~rRLLLTGT 1158 (2239)
....+. ..+ ....++|||||+|.+... ...+...+..+ .....+++|.+
T Consensus 183 ------~~~~~~---~~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 183 ------KLNEFR---EKY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp ------CHHHHH---HHH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred ------cHHHHH---HHh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 000111 111 125789999999999652 33445555543 33456666654
No 202
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.27 E-value=1.2 Score=52.99 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHH-HhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWML-SLYNN--KLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1002 RPYQleGLqwLl-sL~~n--~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
++.+++.+..++ ..... ..+.+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554333 32222 234688999999999988777766654
No 203
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.24 E-value=0.84 Score=52.21 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=22.0
Q ss_pred HHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000101 1010 QWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (2239)
Q Consensus 1010 qwLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (2239)
..+........+.+|.-+.|+|||..+-++.
T Consensus 20 ~~~~~~~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 20 EQVSHLAPLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp HHHHHHTTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 3344444456778999999999997765554
No 204
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.89 E-value=0.33 Score=50.97 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000101 1010 QWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (2239)
Q Consensus 1010 qwLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (2239)
.++........+.+|.-|.|+|||..+-++.
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 3443444567788999999999998775553
No 205
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.13 E-value=1.3 Score=52.52 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhh---cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWMLSLY---NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~---~n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
++.++..+...+... ....+.+|.-+.|+|||..+-.++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444555443333222 23455689999999999888777766543
No 206
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.83 E-value=1.8 Score=50.14 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=27.1
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCCC
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
.+..+|||||+|++.. ....+.+.+.......++++|++.
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 4678999999999843 233455555555566677777654
No 207
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=86.71 E-value=3.4 Score=52.80 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=55.4
Q ss_pred HHHHHHHH-HhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecC-CCCHHHHHHHHHHHhcCCCCccEEEEec--cccc
Q 000101 1332 LDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG-TTSLEDRESAIVDFNSHDSDCFIFLLSI--RAAG 1407 (2239)
Q Consensus 1332 LdrIL~kL-katGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDG-sts~eeRqeiL~~FNs~ds~~~VfLLST--rAGG 1407 (2239)
+.+.|..+ ...+.++|||+..-..++.+.+. .++.+. +.| +++ +..+++.|...+ . .+|+++ ....
T Consensus 381 l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~-~q~~~~~---~~~~~~~~~~~~-~--~vl~~v~gg~~~ 450 (551)
T 3crv_A 381 YADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKY-VESEDSS---VEDLYSAISANN-K--VLIGSVGKGKLA 450 (551)
T ss_dssp HHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEE-ECCSSCC---HHHHHHHTTSSS-S--CEEEEESSCCSC
T ss_pred HHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEE-EcCCCCC---HHHHHHHHHhcC-C--eEEEEEecceec
Confidence 33333333 44567899999888888877763 344433 333 333 456888886322 2 367776 6999
Q ss_pred cccCCC-----cCceEEEcCCCC
Q 000101 1408 RGLNLQ-----SADTVIIYDPDP 1425 (2239)
Q Consensus 1408 eGLNLq-----aADtVIifDppW 1425 (2239)
+|||++ .+..||+.-.|+
T Consensus 451 EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 451 EGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CSSCCEETTEESEEEEEEESCCC
T ss_pred ccccccccCCcceeEEEEEcCCC
Confidence 999999 378999987765
No 208
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.76 E-value=0.32 Score=51.06 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=18.7
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHH
Q 000101 1016 YNNKLNGILADEMGLGKTVQVMAL 1039 (2239)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIAL 1039 (2239)
.....+.+|.-+.|+|||..+-++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGG
T ss_pred hCCCCcEEEECCCCccHHHHHHHH
Confidence 345677899999999999776544
No 209
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.89 E-value=1.1 Score=51.99 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=25.9
Q ss_pred CceEEEecccccccCh-hhHHHHHhhccccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~-~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
+..+|||||+|.+... ...+.+.+.......+++++++.
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 4789999999998532 22344555555566677777654
No 210
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.55 E-value=1.8 Score=51.65 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhhcCCC----CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1002 RDYQIVGLQWMLSLYNNKL----NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~n~l----nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
.+..+..+.++......+. +.+|.-+.|+|||..+-++...+ +...+++.+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~~~~~~ 105 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL----GPDTPFTAIAG 105 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH----CSSCCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh----cccCCcccccc
Confidence 4566677777776665433 46899999999998887776654 22346655553
No 211
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=84.06 E-value=2.7 Score=48.26 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=24.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S 1060 (2239)
++.-+||+|||...+-.+..+.. ....+||+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~---~g~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIY---AKQKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH---TTCCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---cCCceEEEEecc
Confidence 67888999999777666544432 235678888854
No 212
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.88 E-value=2.7 Score=47.44 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S 1060 (2239)
.+.+|.-+.|+|||..+-++...+ ..+++.|....
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~ 74 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAE 74 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHH
Confidence 446899999999998887665533 23555554443
No 213
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=83.83 E-value=2.6 Score=50.02 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=25.3
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
++.+|||||+|.+.. ....+.+.+.......+++++++
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 578999999999843 22334455555555667777665
No 214
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=83.74 E-value=1.5 Score=53.46 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=25.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQ 1064 (2239)
..+.||.-+.|+|||..+-++... ...+++.|....+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~------~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE------SNATFFNISAASLTSK 187 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH------TTCEEEEECSCCC---
T ss_pred CceEEEECCCCCCHHHHHHHHHHh------hcCcEEEeeHHHhhcc
Confidence 356689999999999888666432 1245555555545443
No 215
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=83.53 E-value=1.8 Score=48.84 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=23.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~ 1059 (2239)
++.-.||+|||...+-.+..+.. . ...+|++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~-~--~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQI-A--QYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH-T--TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-c--CCeEEEEccc
Confidence 67889999999666665554443 2 2567888775
No 216
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=83.26 E-value=10 Score=45.68 Aligned_cols=44 Identities=7% Similarity=-0.094 Sum_probs=28.8
Q ss_pred hHHHHHHHH-HHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQ-WMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1002 RPYQleGLq-wLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|+-|..-+. ++..... ...+.+|.-..|+|||.++-.++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444555554 3333332 2334578999999999999888877764
No 217
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.11 E-value=1.5 Score=54.72 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=24.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW 1065 (2239)
.+.||.-+.|+|||..+-++...+ ...+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 456899999999998887776543 23355555555555444
No 218
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.95 E-value=2.9 Score=48.24 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=19.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYL 1043 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~L 1043 (2239)
..+.+|.-+.|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999998887665544
No 219
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.29 E-value=2.3 Score=52.81 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=33.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~ 1070 (2239)
..|.||.-..|+|||+.|-++...+ ..+++.|....++..|.-|-.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccchHH
Confidence 4567999999999999988877543 236777777777766654433
No 220
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=81.02 E-value=2.3 Score=51.40 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=24.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL 1061 (2239)
..+.+|.-+.|+|||..+-++...+ ..+++.|....+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHh
Confidence 4456899999999998887665432 235555544444
No 221
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=80.53 E-value=0.49 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYL 1043 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~L 1043 (2239)
.++.-..|+|||..++.++..+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4678899999999887765543
No 222
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.48 E-value=2.5 Score=49.71 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW 1065 (2239)
..+.+|.-+.|+|||..+-++...+ ..+++.|....++..|
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 89 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHHHhhh
Confidence 4556899999999998887665432 2355555545555444
No 223
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=80.06 E-value=1.3 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=19.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYL 1043 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~L 1043 (2239)
.+.||.-+.|+|||..+-++...+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 456899999999998887776543
No 224
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.69 E-value=5.7 Score=46.89 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhh---cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWMLSLY---NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~---~n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|+.+++.+...+... ..+...+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555543333221 22345688999999999888777665544
No 225
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=78.62 E-value=3.7 Score=53.62 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
.|-+.|.++|... ....++...-|+|||.+.+.-+.+++...+ ....+|+|+.+. ........+.+.++..
T Consensus 2 ~L~~~Q~~av~~~------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK- 74 (673)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT-
T ss_pred CCCHHHHHHHhCC------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcc-
Confidence 4789999998641 334566778999999999999999987644 445789998765 5555556666654321
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----hhcccCCceEEEecccc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQ 1131 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s~L~kikWd~VIIDEAH 1131 (2239)
...++.|.|+..+.... .........+.|+|+..
T Consensus 75 --------------------~~~~~~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~ 112 (673)
T 1uaa_A 75 --------------------EARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTD 112 (673)
T ss_dssp --------------------TTTTSEEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHH
T ss_pred --------------------cccCCEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHH
Confidence 01257788887776431 11112233556777654
No 226
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=78.46 E-value=6.8 Score=49.75 Aligned_cols=85 Identities=15% Similarity=0.284 Sum_probs=57.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecc-----------h---
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA-----------K--- 1085 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gs-----------k--- 1085 (2239)
...|..-+|+|||+.+..++.. ..+|+|||||.. ...+|..+|..|+|.. +.+|-.. .
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~ 88 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDII 88 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHH
Confidence 3467778999999887666532 246899999976 7889999999998864 4443221 1
Q ss_pred hhHHHHHHHHhhcCccEEEEehhHHHH
Q 000101 1086 DQRSRLFSQVAALKFNVLVTTYEFIMY 1112 (2239)
Q Consensus 1086 d~Rk~l~~~i~~~kfdVVITTYE~L~k 1112 (2239)
..|-..+..+......|||||...+..
T Consensus 89 ~~Rl~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 89 SSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp HHHHHHHHHGGGCCSSEEEEEHHHHHB
T ss_pred HHHHHHHHHHHhCCCCEEEEEHHHHhh
Confidence 122223333445566799999988864
No 227
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.30 E-value=4.9 Score=47.55 Aligned_cols=40 Identities=25% Similarity=0.558 Sum_probs=27.3
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCCCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPL 1160 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTPI 1160 (2239)
++.+|||||+|.+-. ....+.+.+..+....+++++.+-.
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 688999999999632 2234566666666666777766543
No 228
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=78.14 E-value=2.6 Score=49.56 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=27.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW 1065 (2239)
.+.+|.-+.|+|||..+-++...+ ..+++.|....+...|
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~ 76 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGN 76 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhcc
Confidence 345788999999999887776655 2456666555554433
No 229
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=77.82 E-value=6.4 Score=46.78 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=17.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIAYL 1043 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~L 1043 (2239)
+.+|.-+.|+|||..+-.++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999998776665443
No 230
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=76.71 E-value=1.5 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=19.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Li 1044 (2239)
+.+|.-+.|+|||..+-++...+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 468999999999988877776653
No 231
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=76.48 E-value=2 Score=55.58 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH
Q 000101 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa 1041 (2239)
..+..+......+...+|.-+.|+|||..+-++..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 33344444444667789999999999977765554
No 232
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=76.10 E-value=8.6 Score=51.58 Aligned_cols=99 Identities=10% Similarity=0.067 Sum_probs=71.3
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHH----HcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1399 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~----~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~Vf 1399 (2239)
..|||-.+..-.+......|.++||.+.....+.-+.+.|. ..|+.+..++|+++..+|..+++.+..++ +.|+
T Consensus 398 TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~--~~Iv 475 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ--IDVV 475 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC--CCEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC--CCEE
Confidence 35889876655555555678999999998877655554443 34899999999999999999999998643 4455
Q ss_pred EEeccccccccCCCcCceEEEcCCC
Q 000101 1400 LLSIRAAGRGLNLQSADTVIIYDPD 1424 (2239)
Q Consensus 1400 LLSTrAGGeGLNLqaADtVIifDpp 1424 (2239)
+.+.......+++...+.||+=+.+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEESCC
T ss_pred EECHHHHhhhhhccCCceEEecccc
Confidence 5555555556788888888774444
No 233
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=75.55 E-value=6.6 Score=51.94 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHH-HHHHHHHHHHCCCCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVL-VNWKSELHKWLPSVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~SLL-sQW~~Ef~KwaPslk 1077 (2239)
.|-|.|.++|.. .....++-..-|+|||.+.+.-|++|+...+ ....+|+|+.+... ......+.+.++.
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~-- 82 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG-- 82 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG--
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcc--
Confidence 589999999864 1334566678999999999999999987433 33568999987643 3444444443211
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----hhcccCCceEEEeccccc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQR 1132 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s~L~kikWd~VIIDEAHr 1132 (2239)
....+.|.|+..+.... .........+.|+|+...
T Consensus 83 --------------------~~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 83 --------------------AAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp --------------------GGTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred --------------------cccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 11246788888775431 111123445678887643
No 234
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=74.43 E-value=3.5 Score=52.29 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=24.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL 1062 (2239)
..+.||.-+.|+|||..+-++...+ ..+++.|....+.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIM 275 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEEHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEEchHhh
Confidence 4556899999999998876664322 3455555444443
No 235
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.92 E-value=5.6 Score=47.31 Aligned_cols=39 Identities=31% Similarity=0.528 Sum_probs=25.9
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
.+.++||||+|.+.. ....+.+.+..+....+++|+.+.
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~ 149 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANY 149 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 478999999999843 223455555555666667776553
No 236
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=72.68 E-value=6 Score=46.82 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=27.4
Q ss_pred HHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1011 WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1011 wLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
.+........+.+|.-|+|+|||..+-++.... .....|++.|-
T Consensus 17 ~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~---~~~~~~~v~v~ 60 (304)
T 1ojl_A 17 EIAMVAPSDATVLIHGDSGTGKELVARALHACS---ARSDRPLVTLN 60 (304)
T ss_dssp HHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS---SCSSSCCCEEE
T ss_pred HHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC---cccCCCeEEEe
Confidence 333333456778999999999998775544321 12345666664
No 237
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=71.62 E-value=2.4 Score=49.07 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=18.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa 1041 (2239)
..+.+|.-+.|+|||..+-++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45568999999999988766654
No 238
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=71.02 E-value=8.2 Score=44.27 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=18.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAY 1042 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~ 1042 (2239)
.+.+|.-+.|+|||..+-++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34588999999999888776654
No 239
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=70.05 E-value=10 Score=44.15 Aligned_cols=38 Identities=21% Similarity=0.138 Sum_probs=24.8
Q ss_pred ceEEEecccccccC----hhhHHHHHhhcc---ccceEEEecCCC
Q 000101 1122 WKYIIIDEAQRMKD----RESVLARDLDRY---RCQRRLLLTGTP 1159 (2239)
Q Consensus 1122 Wd~VIIDEAHrIKN----~~SKlskaLk~L---ka~rRLLLTGTP 1159 (2239)
.-+|||||+|.+.. ........|..+ ....++++||++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~ 173 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSE 173 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCc
Confidence 56899999999864 222334444433 246688889875
No 240
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=69.06 E-value=17 Score=43.95 Aligned_cols=95 Identities=20% Similarity=0.199 Sum_probs=67.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEE
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1400 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~---rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfL 1400 (2239)
..+||-.+..-.+..+...+.++||.+.....+.-+.+.|.. .++.+..++|+++..+|...+..+..++ +.|++
T Consensus 45 TGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Iiv 122 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILV 122 (414)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEEE
Confidence 357887754444444446788999999999998888888877 5889999999999988888888887633 44555
Q ss_pred Eecccccc---ccCCCcCceEEE
Q 000101 1401 LSIRAAGR---GLNLQSADTVII 1420 (2239)
Q Consensus 1401 LSTrAGGe---GLNLqaADtVIi 1420 (2239)
.+....-. -+++...++||+
T Consensus 123 ~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 123 FSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEHHHHHHCHHHHTTCCCSEEEE
T ss_pred ECHHHHHHHHHHhccccccEEEE
Confidence 55443311 144455666554
No 241
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=68.99 E-value=15 Score=42.66 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=18.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAY 1042 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~ 1042 (2239)
.+.+|.-+.|+|||..+-++...
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 56799999999999887666543
No 242
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=68.61 E-value=8.5 Score=43.52 Aligned_cols=130 Identities=13% Similarity=0.090 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--ch-------HHHHHHHHHHHHHCCCCceEEEe----cch
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PN-------AVLVNWKSELHKWLPSVSCIYYV----GAK 1085 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV--P~-------SLLsQW~~Ef~KwaPslkvvvy~----Gsk 1085 (2239)
..+.++.-..|.|||-.|+++...... ...+++||- .. .++.+ + + +.+..+. -..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQF~Kg~~~~gE~~~l~~-------L-~-v~~~~~g~gf~~~~ 95 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQFIKGTWPNGERNLLEP-------H-G-VEFQVMATGFTWET 95 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEESSCCSSCCHHHHHHGG-------G-T-CEEEECCTTCCCCG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCccHHHHHHh-------C-C-cEEEEcccccccCC
Confidence 345678889999999999999887764 234677773 21 12222 1 1 1111110 011
Q ss_pred hhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccC----hhhHHHHHhhccccceEEEecCCCCC
Q 000101 1086 DQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1086 d~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN----~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
..+....... -..+......+..-.|++|||||.-...+ ....+...|..-+...-++|||-
T Consensus 96 ~~~~~~~~~a-----------~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr--- 161 (196)
T 1g5t_A 96 QNREADTAAC-----------MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR--- 161 (196)
T ss_dssp GGHHHHHHHH-----------HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS---
T ss_pred CCcHHHHHHH-----------HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC---
Confidence 1111100000 12222334556667899999999854311 23345556665556668999985
Q ss_pred CCHHHHHHHHhhh
Q 000101 1162 NDLKELWSLLNLL 1174 (2239)
Q Consensus 1162 NnL~ELwsLLnFL 1174 (2239)
+-..+|..+-+++
T Consensus 162 ~ap~~l~e~AD~V 174 (196)
T 1g5t_A 162 GCHRDILDLADTV 174 (196)
T ss_dssp SCCHHHHHHCSEE
T ss_pred CCcHHHHHhCcce
Confidence 4566666666554
No 243
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=67.83 E-value=13 Score=46.32 Aligned_cols=50 Identities=18% Similarity=0.083 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
.+|+.++.-+..+.-.+|+...|+|||..++.++..+.... ..+++++.-
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~ 240 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSL 240 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEES
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEEC
Confidence 35677765455565679999999999988888877665422 247888874
No 244
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=67.79 E-value=12 Score=46.55 Aligned_cols=50 Identities=14% Similarity=0.015 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
.+|..++.-+..+.-.+|+...|+|||..++.++..... ....++|++.-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~sl 237 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSL 237 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEES
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEEC
Confidence 446666654555555699999999999888887776653 22358888874
No 245
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.73 E-value=20 Score=45.52 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=18.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYL 1043 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~L 1043 (2239)
...||.-+.|+|||..+-++...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 456899999999998887666543
No 246
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=66.88 E-value=14 Score=47.90 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=29.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA 1060 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~S 1060 (2239)
..+.+++-.+|+|||...-++|+.++.... ..-.+++|=|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 457899999999999999888888774222 222355555775
No 247
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=66.48 E-value=33 Score=40.39 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.3
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALI 1040 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALI 1040 (2239)
.+.+|.-+.|+|||..+-++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 467999999999998876664
No 248
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=65.96 E-value=12 Score=46.87 Aligned_cols=21 Identities=29% Similarity=0.233 Sum_probs=16.7
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa 1041 (2239)
+.||.-+.|+|||..+-++..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 568999999999977755543
No 249
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.41 E-value=4.4 Score=50.88 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=30.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~E 1068 (2239)
.|.||.-..|+|||+.|-++...+- .+++.|....++..|..+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGTCCSSSSH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEehhhhccccchH
Confidence 5668999999999999888776542 356666666666555433
No 250
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.64 E-value=22 Score=47.05 Aligned_cols=26 Identities=35% Similarity=0.403 Sum_probs=20.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
..+.+|.-+.|+|||..+-++...+.
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 45568999999999988877776554
No 251
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=63.18 E-value=15 Score=49.66 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=21.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
..+.+|.-+.|+|||..+-++...+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345699999999999888777766543
No 252
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.73 E-value=5.9 Score=49.72 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef 1069 (2239)
..|.||.-..|+|||+.|-++...+- .+++.|....++..|.-|-
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~~s~l~sk~vGes 260 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQKYLGDG 260 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEESGGGCCSSSSHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC------CCEEEEEHHHhhhccCchH
Confidence 35668999999999999888776542 3677777777766654443
No 253
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=61.17 E-value=8.3 Score=44.66 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=23.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
+.+|.-+.|+|||..+-++...+. ...++++.+-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEee
Confidence 468999999999988876665543 2334555543
No 254
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=60.92 E-value=8.1 Score=48.22 Aligned_cols=40 Identities=30% Similarity=0.320 Sum_probs=27.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 1063 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs 1063 (2239)
.+.||..+.|+|||..+-++...+ +...+++.|....+..
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l----~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL----GSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH----CTTSCEEEEEGGGGCC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh----CCCceEEEEeHHHHHH
Confidence 457999999999999988777654 2224666666555443
No 255
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=60.33 E-value=45 Score=38.74 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=23.7
Q ss_pred CceEEEecccccccCh-hhHHHHHhhcc---ccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKDR-ESVLARDLDRY---RCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~-~SKlskaLk~L---ka~rRLLLTGTP 1159 (2239)
+.-+|||||+|.+... ...+...|..+ .....+++||++
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~ 179 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSE 179 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESS
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCc
Confidence 3668999999998542 11222223322 235688889985
No 256
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=60.20 E-value=8.3 Score=42.13 Aligned_cols=45 Identities=11% Similarity=-0.046 Sum_probs=29.3
Q ss_pred HHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1007 VGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1007 eGLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
.+|+.++. -+..+.-.+|+-+.|+|||..+..++. . . .+++++|.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~-~--~~~v~~i~ 52 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L-S--GKKVAYVD 52 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H-H--CSEEEEEE
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H-c--CCcEEEEE
Confidence 34556653 334444568899999999988777665 1 1 24667666
No 257
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=60.18 E-value=40 Score=36.32 Aligned_cols=77 Identities=25% Similarity=0.342 Sum_probs=46.9
Q ss_pred cCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCccEE
Q 000101 1026 DEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVL 1103 (2239)
Q Consensus 1026 DEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV--P~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVV 1103 (2239)
---|.|||..++.+...+.. . ..++|+|- |...+..|... . ...++++
T Consensus 9 ~kgG~GKTt~a~~la~~la~-~--g~~vlliD~D~~~~~~~~~~~----~-----------------------~~~~~~~ 58 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSR-S--GYNIAVVDTDPQMSLTNWSKA----G-----------------------KAAFDVF 58 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHH-T--TCCEEEEECCTTCHHHHHHTT----S-----------------------CCSSEEE
T ss_pred CCCCccHHHHHHHHHHHHHH-C--CCeEEEEECCCCCCHHHHHhc----C-----------------------CCCCcEE
Confidence 44689999999998888875 2 23677776 55555566431 0 0124444
Q ss_pred EEehhHHHHhhhhcccCCceEEEecccccc
Q 000101 1104 VTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1104 ITTYE~L~kD~s~L~kikWd~VIIDEAHrI 1133 (2239)
-...+.+......+.. .+++||||=.-.+
T Consensus 59 ~~~~~~l~~~l~~l~~-~yD~viiD~~~~~ 87 (206)
T 4dzz_A 59 TAASEKDVYGIRKDLA-DYDFAIVDGAGSL 87 (206)
T ss_dssp ECCSHHHHHTHHHHTT-TSSEEEEECCSSS
T ss_pred ecCcHHHHHHHHHhcC-CCCEEEEECCCCC
Confidence 4444455444444443 5899999966544
No 258
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=58.79 E-value=21 Score=38.85 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=26.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL 1061 (2239)
.+.+|.-+.|+|||..+.++...+.. ...++++|.-..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~~~~~ 93 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIVYVPEL 93 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEhHHH
Confidence 56689999999999988777766542 2345555543333
No 259
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=58.54 E-value=27 Score=42.37 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
..|+.++.-+..+.-.||+...|.|||..++.++..+.. ...++|++.-
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC
Confidence 446666654444545689999999999988888776654 3468888874
No 260
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=58.33 E-value=13 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=18.1
Q ss_pred CeEE--EcCCCchHHHHHHHHHHHHH
Q 000101 1021 NGIL--ADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1021 nGIL--ADEMGLGKTIQAIALIa~Li 1044 (2239)
..+| .-+.|+|||..+-.++..+.
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 3466 78999999988877766554
No 261
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.44 E-value=3.4 Score=51.81 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=31.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~E 1068 (2239)
..|.||.-..|+|||+.|-++...+ ..+++.|....++..|..+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCSSCSSH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhhhhcccch
Confidence 3456899999999999988777543 2366777677676655433
No 262
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=56.73 E-value=16 Score=44.13 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=18.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (2239)
..+.+|.-++|+|||..+-++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999887666543
No 263
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=56.55 E-value=12 Score=49.75 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=23.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEE
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLII 1056 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIV 1056 (2239)
+.+|.-++|+|||..+-++...+. +...+++.|
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF---GDEESMIRI 555 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEE
Confidence 368999999999998877766553 233455444
No 264
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.14 E-value=6.2 Score=49.92 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=30.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~E 1068 (2239)
..|.||.-..|+|||+.|-++...+- .+++.|....++..|..+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTD------ATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCCCSSSH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccC------CCeEEEEhHHhhcccCCH
Confidence 45568899999999999887775442 366666666676655433
No 265
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=56.13 E-value=8.4 Score=43.72 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=17.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAY 1042 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~ 1042 (2239)
.+.+|.-+.|+|||..+-++...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45689999999999877666543
No 266
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=55.78 E-value=33 Score=48.04 Aligned_cols=95 Identities=11% Similarity=0.074 Sum_probs=71.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1399 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~----rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~Vf 1399 (2239)
..+||-.+....+-.+...+.+|||.+..+..+.-+.+.|.. .++.+..++|..+..++..+++.+..+ .+.|+
T Consensus 633 TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g--~~dIv 710 (1151)
T 2eyq_A 633 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG--KIDIL 710 (1151)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT--CCSEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC--CCCEE
Confidence 357888776555555566788999999998877666665543 367889999999999999999988864 44566
Q ss_pred EEeccccccccCCCcCceEEE
Q 000101 1400 LLSIRAAGRGLNLQSADTVII 1420 (2239)
Q Consensus 1400 LLSTrAGGeGLNLqaADtVIi 1420 (2239)
+.+.......+++...+.||+
T Consensus 711 V~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 711 IGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp EECTHHHHSCCCCSSEEEEEE
T ss_pred EECHHHHhCCccccccceEEE
Confidence 666666666788888877776
No 267
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=55.20 E-value=30 Score=43.47 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=23.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
.+++-..|+|||-.+..++.++.. . .+.+++|+
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~-~--G~kVllv~ 132 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKK-R--GYKVGLVA 132 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH-T--TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-c--CCeEEEEe
Confidence 366778999999988888877653 2 34566655
No 268
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=55.13 E-value=19 Score=45.37 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=24.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
.+++-..|+|||.++..++.++.. ....++||+
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~---~G~kVllv~ 135 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQK---RGYKVGVVC 135 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHHHH---CCCeEEEEe
Confidence 367788999999999888877753 234566665
No 269
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=53.31 E-value=14 Score=39.32 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=19.9
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1018 NKLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
.+...+|.-+.|+|||..+-++...+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345567899999999988766665443
No 270
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=53.19 E-value=59 Score=35.41 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1008 GLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1008 GLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
+|+.++. -+..+...+|+.+.|+|||..+..++..+... .++++++.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~ 58 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVT 58 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEE
Confidence 3444442 23344445788999999998887776555432 34677776
No 271
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=52.14 E-value=32 Score=40.87 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
.+|..++.-+..+.-.||+...|+|||..++.++..... . ..++|++.-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~--g~~vl~~sl 104 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSL 104 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-T--TCEEEEEES
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c--CCeEEEEEC
Confidence 456666544455555799999999999888777766543 2 268888884
No 272
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=51.84 E-value=32 Score=47.93 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=71.4
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEE
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1400 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~---rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfL 1400 (2239)
..+||-.+..-.+..+...+.++||.+..+..+.-+.+.|.. .++.+..++|+++..+|...+..+..++ +.|++
T Consensus 102 TGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~--~~IlV 179 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILV 179 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSC--CSEEE
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC--CCEEE
Confidence 458898766555555557788999999999999888888887 5788999999999888888888888643 44555
Q ss_pred Eecccccc---ccCCCcCceEEEcCC
Q 000101 1401 LSIRAAGR---GLNLQSADTVIIYDP 1423 (2239)
Q Consensus 1401 LSTrAGGe---GLNLqaADtVIifDp 1423 (2239)
.+....-. -+++...++||+=+.
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred ECHHHHHHHHHhhcccCcCEEEEeCC
Confidence 55433311 145667777776443
No 273
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=51.75 E-value=29 Score=46.79 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=28.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~ 1066 (2239)
..+.||.-..|+|||+.|-++...+ ..+++.|....++..|.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWF 552 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhcccc
Confidence 3456999999999998887766432 23555555566776663
No 274
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=50.17 E-value=27 Score=42.75 Aligned_cols=56 Identities=18% Similarity=0.064 Sum_probs=38.5
Q ss_pred HHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000101 1007 VGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 1007 eGLqwLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW 1065 (2239)
.+|+.++. -+..+.-.+|+-+.|+|||..++.++..... ..+++++|.......+|
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV 117 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH
Confidence 35666664 3444555688999999999999888877653 23578888865544444
No 275
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=50.12 E-value=28 Score=42.27 Aligned_cols=52 Identities=15% Similarity=0.005 Sum_probs=35.7
Q ss_pred HHHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000101 1006 IVGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2239)
Q Consensus 1006 leGLqwLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S 1060 (2239)
..+|++++. -+..+.-.+|+-+.|+|||..++.++..+.. ..+++++|.-..
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~ 99 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEH 99 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCC
Confidence 345666664 3444555688899999999998888876653 235778777543
No 276
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.74 E-value=5.8 Score=49.69 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=28.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW 1065 (2239)
..|.||.-..|+|||..|-++...+ ..+++.|....++..|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGTCCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchhhccc
Confidence 3456899999999999988877654 2356666666665544
No 277
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=49.15 E-value=19 Score=50.30 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=53.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCccE
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNV 1102 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdV 1102 (2239)
|+| .-|+|||.+.+.-|.+++.......++|+|||....-+-...+...++. ....+|
T Consensus 6 V~a-gAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~~---------------------~~~~~~ 63 (1166)
T 3u4q_B 6 LVG-RSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPDM---------------------GGMIRA 63 (1166)
T ss_dssp EEE-CTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSSC---------------------SEESSE
T ss_pred EEe-CCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhhh---------------------cceeee
Confidence 444 5899999999999999987655557899999988655533333332211 112468
Q ss_pred EEEehhHHHHhh-hhcccCCceEEEecccc
Q 000101 1103 LVTTYEFIMYDR-SKLSKVDWKYIIIDEAQ 1131 (2239)
Q Consensus 1103 VITTYE~L~kD~-s~L~kikWd~VIIDEAH 1131 (2239)
.|.|+..+.... .... .....|+|+..
T Consensus 64 ~V~TFhsla~~il~~~g--~~~~~ild~~~ 91 (1166)
T 3u4q_B 64 QVFSFSRLAWRVLQHTG--GMSRPFLTSTG 91 (1166)
T ss_dssp EEECHHHHHHHHHHHHS--CTTSCEECHHH
T ss_pred EEecHHHHHHHHHHHcC--CCcccCcCHHH
Confidence 899998876431 1111 22345677654
No 278
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=49.15 E-value=21 Score=45.36 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=23.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~ 1059 (2239)
.+.+|.-+.|+|||..+-++...+ ..|++.|...
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~ 83 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGS 83 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHH
Confidence 456899999999998876665432 2356555443
No 279
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=48.20 E-value=34 Score=42.87 Aligned_cols=50 Identities=14% Similarity=0.057 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
..+|+.++.-+..+.-.||+...|.|||..++.++...... ..++|++.-
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 34577777545555557999999999999998888776642 357888874
No 280
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=45.20 E-value=51 Score=37.91 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.4
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa 1041 (2239)
+.+|.-+.|+|||..+-++..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 468999999999977655543
No 281
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=44.80 E-value=18 Score=41.74 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=27.0
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---------CCCCeEEEec
Q 000101 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKG---------NYGPHLIIVP 1058 (2239)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lie~k~---------~~GP~LIVVP 1058 (2239)
..+.-.+|+-..|+|||..+..++..+. .+ ..++++++.-
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~ 76 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPA 76 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEES
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEEC
Confidence 3455567889999999988877776443 22 1356777764
No 282
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=44.79 E-value=55 Score=36.15 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=28.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000101 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2239)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~ 1059 (2239)
.+.-.+|+-+.|+|||..++.++..+.. ..++++++.-.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcc
Confidence 3444578889999999988888776653 23577887743
No 283
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=43.97 E-value=42 Score=39.82 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=26.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
+.+.+|.-++|+|||..+.++...+....+ .++++|.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEE
Confidence 456689999999999999888877762222 3555544
No 284
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=43.18 E-value=80 Score=39.86 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=55.9
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCceEEEecc--hhhHHHHHHHHhhcCccEEE
Q 000101 1029 GLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVSCIYYVGA--KDQRSRLFSQVAALKFNVLV 1104 (2239)
Q Consensus 1029 GLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVI 1104 (2239)
...+....+..+...+......+++||.|+.. .+..+...|.+.++ ++.+..++|. ...|......+..+..+|+|
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 34444445555555554445667899999976 45556666776665 7888889885 55677778888889999999
Q ss_pred Eeh
Q 000101 1105 TTY 1107 (2239)
Q Consensus 1105 TTY 1107 (2239)
+|-
T Consensus 398 aT~ 400 (563)
T 3i5x_A 398 CTD 400 (563)
T ss_dssp ECG
T ss_pred Ecc
Confidence 994
No 285
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=42.62 E-value=53 Score=37.05 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.4
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa 1041 (2239)
+.+|.-+.|+|||..+-++..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 468999999999977655543
No 286
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=42.22 E-value=41 Score=40.97 Aligned_cols=50 Identities=16% Similarity=-0.015 Sum_probs=35.3
Q ss_pred HHHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1006 IVGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1006 leGLqwLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
..+|++++. -+..+.-.+|+-+.|+|||..++.++..+.. ..+++++|.-
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~ 99 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDA 99 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEES
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeC
Confidence 345666653 3444555689999999999999888877653 2347788775
No 287
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=42.11 E-value=34 Score=37.92 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=27.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~ 1059 (2239)
+.-.+|+.+.|+|||..++-++....... ..+++++.-.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E 68 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeeccc
Confidence 44468999999999998888776644322 3477888743
No 288
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=41.76 E-value=82 Score=37.72 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=59.4
Q ss_pred cccHHHHHHHHHHHHH-hcCCeEEEEEccHHHHHHHHHHHHHc-CC---eEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000101 1325 SCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWR-QL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1399 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLk-atGhKVLIFSQ~t~~LDILed~L~~r-Gi---ky~RLDGsts~eeRqeiL~~FNs~ds~~~Vf 1399 (2239)
.+||-.....++..+. ..+.++||.|.....+.-..+.|... ++ .+..++|+....++...... ..|+
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-------~~iv 105 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-------AKVI 105 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-------CSEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC-------CCEE
Confidence 4788776655544443 46789999999988877666666544 66 89999999998776554432 2355
Q ss_pred EEecccccc-----ccCCCcCceEEE
Q 000101 1400 LLSIRAAGR-----GLNLQSADTVII 1420 (2239)
Q Consensus 1400 LLSTrAGGe-----GLNLqaADtVIi 1420 (2239)
+.+...... .+++...+.||+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EecHHHHHHHHhcCCcchhhceEEEE
Confidence 555544432 356677777776
No 289
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=41.25 E-value=72 Score=33.76 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=40.9
Q ss_pred CCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCccEEEEe
Q 000101 1049 NYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTT 1106 (2239)
Q Consensus 1049 ~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITT 1106 (2239)
..+++||.|+.. .+......|... ++.+..++|. ...|......+..+..+|+|+|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 92 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 346899999976 444455555543 5678888886 4567777778888899999999
No 290
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=40.61 E-value=91 Score=39.82 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCceEEEecc--hhhHHHHHHHHhhcCccEEEEeh
Q 000101 1032 KTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTY 1107 (2239)
Q Consensus 1032 KTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTY 1107 (2239)
+....+..+...+......+++||.|++. .+..+...|.+.++ ++.+..++|. ...|......+..+..+|+|+|-
T Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~ 349 (579)
T 3sqw_A 270 SIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 349 (579)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred hHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc
Confidence 33344444444444445567899999976 55666777777665 7888889887 55677778888889999999994
No 291
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=39.89 E-value=77 Score=34.56 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=38.5
Q ss_pred HHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCccEEEEe
Q 000101 1042 YLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTT 1106 (2239)
Q Consensus 1042 ~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITT 1106 (2239)
.++......+++||.|+..- +......|.. .++.+..++|. ...|......+..+...|+|+|
T Consensus 38 ~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~--~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 38 DLLNATGKDSLTLVFVETKKGADSLEDFLYH--EGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 103 (185)
T ss_dssp HHHHHC-CCSCEEEEESCHHHHHHHHHHHHH--TTCCEEEEC--------CHHHHHHHHTSSSEEEEE
T ss_pred HHHHhcCCCCeEEEEECCHHHHHHHHHHHHH--cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 33333335578999999764 4434444444 25678888885 4566677777888899999999
No 292
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=39.85 E-value=26 Score=46.23 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S 1060 (2239)
+.+-.-|.++|..++.... +. .+|-..=|-|||..+..++..+. +.++|.+|+.
T Consensus 174 ~~~T~dQ~~al~~~~~~~~-~~-~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~ 227 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP-GV-AAVTAARGRGKSALAGQLISRIA------GRAIVTAPAK 227 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS-EE-EEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHhhh-Ce-EEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCH
Confidence 4678899999988877543 22 35566699999965555554442 2457777865
No 293
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=39.23 E-value=1.5e+02 Score=32.40 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=54.9
Q ss_pred cccHHHHHHHHHHHH-Hh--cCCeEEEEEccHHHHHHHHHHHHHc-----CCeEEeecCCCCHHHHHHHHHHHhcCCCCc
Q 000101 1325 SCGKLWILDRILIKL-QR--TGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSDC 1396 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kL-ka--tGhKVLIFSQ~t~~LDILed~L~~r-----Giky~RLDGsts~eeRqeiL~~FNs~ds~~ 1396 (2239)
.+||-....-.+... .. .+.++||.+.....+.-+.+.+... ++.+..++|+.+.......+.. . .+
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~--~~ 135 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---N--CP 135 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---S--CC
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---C--CC
Confidence 477875543333332 22 2348999999988887777666543 7889999999987665544432 1 22
Q ss_pred cEEEEecccc-----ccccCCCcCceEEE
Q 000101 1397 FIFLLSIRAA-----GRGLNLQSADTVII 1420 (2239)
Q Consensus 1397 ~VfLLSTrAG-----GeGLNLqaADtVIi 1420 (2239)
.|++.+.... ...+++...++||+
T Consensus 136 ~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 136 HIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 3444443322 23456677777765
No 294
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=39.18 E-value=95 Score=33.31 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=41.1
Q ss_pred CCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCccEEEEe
Q 000101 1049 NYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTT 1106 (2239)
Q Consensus 1049 ~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITT 1106 (2239)
..+++||.|+.. .+......|... ++.+..++|. ...|......+..+...|+|+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 88 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 456899999876 444455555553 5677888886 4566677777888899999999
No 295
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=37.48 E-value=1.1e+02 Score=34.11 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=40.7
Q ss_pred CCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCccEEEEe
Q 000101 1050 YGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTT 1106 (2239)
Q Consensus 1050 ~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITT 1106 (2239)
.+++||.|+.. .+......+.+. ++.+..++|. ...|......+..+..+|+|+|
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT 88 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT 88 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 57999999976 444444445443 5677788886 5567777888888899999999
No 296
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=37.37 E-value=41 Score=39.80 Aligned_cols=34 Identities=29% Similarity=0.203 Sum_probs=22.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
.+|+-..|+|||-.+..+...+....+ ..+++|.
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~ 141 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFIT 141 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 456677999999888777665542122 3566655
No 297
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=36.94 E-value=1.2e+02 Score=31.94 Aligned_cols=56 Identities=9% Similarity=0.146 Sum_probs=40.8
Q ss_pred CCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCccEEEEe
Q 000101 1049 NYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTT 1106 (2239)
Q Consensus 1049 ~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITT 1106 (2239)
..+++||.|+.. .+......|... ++.+..++|. ...|......+..+...|+|+|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 87 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST 87 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 457899999976 444455555543 5677888886 4567777777888899999999
No 298
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=36.73 E-value=58 Score=41.54 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=17.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa 1041 (2239)
.+.+|.-+.|+|||..+-++..
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999987765543
No 299
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=35.34 E-value=1.9e+02 Score=32.77 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=53.8
Q ss_pred hcccHHHH-HHHHHHHHHhc--CCeEEEEEccHHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHHhcCCCCc
Q 000101 1324 KSCGKLWI-LDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDC 1396 (2239)
Q Consensus 1324 ~~SGKLel-LdrIL~kLkat--GhKVLIFSQ~t~~LDILed~L~~----rGiky~RLDGsts~eeRqeiL~~FNs~ds~~ 1396 (2239)
..+||-.+ +.-++..+... +.++||.+..+..+.-+.+.|.. .++.+..+.|+.........+ .. .+
T Consensus 89 TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~---~~ 162 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---AK---KP 162 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---HT---CC
T ss_pred CCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---cC---CC
Confidence 35788765 33444444433 45799999988877666655543 388899999998865544332 21 23
Q ss_pred cEEEEecccc------ccccCCCcCceEEE
Q 000101 1397 FIFLLSIRAA------GRGLNLQSADTVII 1420 (2239)
Q Consensus 1397 ~VfLLSTrAG------GeGLNLqaADtVIi 1420 (2239)
.|++.+.... ..++++...+.||+
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 3444443222 23456666776665
No 300
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=35.21 E-value=1.2e+02 Score=33.40 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=41.2
Q ss_pred CCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCccEEEEe
Q 000101 1050 YGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTT 1106 (2239)
Q Consensus 1050 ~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITT 1106 (2239)
.+++||.|+.. .+..+...|... ++.+..++|. ...|......+..+...|+|+|
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 111 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 111 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 45899999876 455555555554 5678888887 5567777788888899999999
No 301
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=34.60 E-value=1.9e+02 Score=32.25 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=54.4
Q ss_pred hcccHHHH-HHHHHHHHH-------hcCCeEEEEEccHHHHHHHHHH----HHHcCCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1324 KSCGKLWI-LDRILIKLQ-------RTGHRVLLFSTMTKLLDILEEY----LQWRQLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1324 ~~SGKLel-LdrIL~kLk-------atGhKVLIFSQ~t~~LDILed~----L~~rGiky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
..+||-.+ +.-++..+. ..+.++||.+.....+.-+.+. +...++.+..+.|+.+.......+..
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--- 151 (242)
T 3fe2_A 75 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER--- 151 (242)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH---
T ss_pred CcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC---
Confidence 45788655 444444443 2466899999888776555444 44558999999999987765544432
Q ss_pred CCCCccEEEEecc-ccc-----cccCCCcCceEEE
Q 000101 1392 HDSDCFIFLLSIR-AAG-----RGLNLQSADTVII 1420 (2239)
Q Consensus 1392 ~ds~~~VfLLSTr-AGG-----eGLNLqaADtVIi 1420 (2239)
.+.| |++|. ..- ..+++...++||+
T Consensus 152 ---~~~I-~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 152 ---GVEI-CIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp ---CCSE-EEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred ---CCCE-EEECHHHHHHHHHcCCCCcccccEEEE
Confidence 2334 44442 221 2346666766665
No 302
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=33.99 E-value=89 Score=33.36 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=40.1
Q ss_pred CCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCccEEEEe
Q 000101 1049 NYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTT 1106 (2239)
Q Consensus 1049 ~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITT 1106 (2239)
..+++||.|+.. .+......|... ++.+..++|. ...|......+..+..+|+|+|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT 91 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT 91 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 456899999876 444444445442 5677888886 4567777777888899999999
No 303
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=33.99 E-value=78 Score=38.59 Aligned_cols=38 Identities=16% Similarity=-0.022 Sum_probs=28.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S 1060 (2239)
.+|+-+.|+|||..++-++..... .+..+.+|.|....
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~ 68 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccc
Confidence 578999999999998888877664 22245677777544
No 304
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=33.42 E-value=4.4 Score=45.41 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=27.5
Q ss_pred hcCCCCcccccchhhccCccccccccccccCC
Q 000101 1750 EARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1781 (2239)
Q Consensus 1750 i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1781 (2239)
+++||||.. |..+|+.|+|.++.+...|+.+
T Consensus 101 ~k~PmDL~~-i~kKl~~~~Y~s~~eF~~Dv~l 131 (183)
T 3lqh_A 101 QQQPLDLEG-VKRKMDQGNYTSVLEFSDDIVK 131 (183)
T ss_dssp C--CCSHHH-HHHHHHTTCCCCHHHHHHHHHH
T ss_pred hcCCccHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 599999999 9999999999999999999986
No 305
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=31.94 E-value=1.3e+02 Score=33.42 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=42.5
Q ss_pred hcccHHHH-HHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHc-----CCeEEeecCCCCHHHHHH
Q 000101 1324 KSCGKLWI-LDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1324 ~~SGKLel-LdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~r-----Giky~RLDGsts~eeRqe 1384 (2239)
..+||-.+ +.-++..+. ..+.++||.+.....+.-+.+.+... ++.+..++|+....++..
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 138 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT 138 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHH
Confidence 35788765 444455443 23568999999988887777776643 678888999988766544
No 306
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=31.39 E-value=73 Score=38.03 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=22.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
++.-..|+|||..+..+...+.. ..+.++++.
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~~---~g~kV~lv~ 139 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFVD---EGKSVVLAA 139 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHHh---cCCEEEEEc
Confidence 56678999999888777665543 235666665
No 307
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=30.47 E-value=39 Score=45.61 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=26.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~E 1068 (2239)
.+.||.-..|+|||..+=++... ...+++.|....++..|..+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e------lg~~~~~v~~~~l~sk~~ge 281 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE------TGAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT------TTCEEEEEEHHHHHSSCTTH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH------hCCeEEEEEhHHhhcccchH
Confidence 45689999999999887665532 12344445455566555433
No 308
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=30.23 E-value=1.6e+02 Score=28.78 Aligned_cols=97 Identities=10% Similarity=-0.145 Sum_probs=57.6
Q ss_pred HHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcC--CCCccEEEEeccccccccCCCc-
Q 000101 1338 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGRGLNLQS- 1414 (2239)
Q Consensus 1338 kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~--ds~~~VfLLSTrAGGeGLNLqa- 1414 (2239)
.+...+..|..+......+..+ ....+..+.+|-.++..+-..++...+.. ...+.|++++...-..-...-.
T Consensus 22 ~~l~~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~ 97 (133)
T 3nhm_A 22 LLLSGEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQP 97 (133)
T ss_dssp HHHTTTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSC
T ss_pred HHHhCCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhc
Confidence 3333677777766655555544 44567888888776655556677766653 2356777777643222122111
Q ss_pred -CceEEEcCCCCCcchHHHhhhhhccc
Q 000101 1415 -ADTVIIYDPDPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1415 -ADtVIifDppWNP~~dlQAiGRAhRI 1440 (2239)
|+. ++--|+++..+..++.++.+-
T Consensus 98 g~~~--~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 98 VPDA--YLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp CCSE--EEESSCCHHHHHHHHHHHHHH
T ss_pred CCce--EEeccCCHHHHHHHHHHHHhh
Confidence 333 334588999999988887653
No 309
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=30.10 E-value=83 Score=37.71 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=22.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
++.-..|.|||..+..+...+.. ..+.+|++.
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~~---~g~kVllid 140 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYAE---LGYKVLIAA 140 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEe
Confidence 45667999999888777766543 245677775
No 310
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=29.94 E-value=2.1e+02 Score=33.72 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=56.6
Q ss_pred cccHHHHHHH-HHHHHHh--cCCeEEEEEccHHHHHHHHHHHHHc-----CCeEEeecCCCCHHHHHHHHHHHhcCCCCc
Q 000101 1325 SCGKLWILDR-ILIKLQR--TGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSDC 1396 (2239)
Q Consensus 1325 ~SGKLelLdr-IL~kLka--tGhKVLIFSQ~t~~LDILed~L~~r-----Giky~RLDGsts~eeRqeiL~~FNs~ds~~ 1396 (2239)
.+||-....- ++..+.. .+.++||.|.....+.-+.+.+... ++.+..++|+.+..+....+.. + ..
T Consensus 55 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~--~~ 129 (391)
T 1xti_A 55 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---N--CP 129 (391)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---S--CC
T ss_pred CCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---C--CC
Confidence 4788755333 2322221 3568999999988887777666543 7889999999987766554433 1 23
Q ss_pred cEEEEecccc-----ccccCCCcCceEEE
Q 000101 1397 FIFLLSIRAA-----GRGLNLQSADTVII 1420 (2239)
Q Consensus 1397 ~VfLLSTrAG-----GeGLNLqaADtVIi 1420 (2239)
.|++.+.... ...+++...+.||+
T Consensus 130 ~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 130 HIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 3555544333 23456677777775
No 311
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=29.85 E-value=1.3e+02 Score=35.77 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=40.9
Q ss_pred CCCeEEEechHH-HHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCccEEEEe
Q 000101 1050 YGPHLIIVPNAV-LVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTT 1106 (2239)
Q Consensus 1050 ~GP~LIVVP~SL-LsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITT 1106 (2239)
.+++||.|+..- +......+... ++.+..++|. ...|......+..+..+|+|+|
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT 85 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT 85 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe
Confidence 679999999763 44444444432 5678888887 5677777888888999999999
No 312
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=29.83 E-value=53 Score=33.22 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEc-cHHHHHHHHHHHHHcCCeEEeecCCCC
Q 000101 1328 KLWILDRILIKLQRTGHRVLLFST-MTKLLDILEEYLQWRQLVYRRIDGTTS 1378 (2239)
Q Consensus 1328 KLelLdrIL~kLkatGhKVLIFSQ-~t~~LDILed~L~~rGiky~RLDGsts 1378 (2239)
++..+...+..+....++|||||. .-.........|...|+.+..|+|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 74 KLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp GHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cHHHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 333444444444332289999994 555566788889999999899999875
No 313
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=29.67 E-value=96 Score=36.83 Aligned_cols=52 Identities=21% Similarity=0.130 Sum_probs=33.1
Q ss_pred HHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH---hCCCCCeEEEec
Q 000101 1007 VGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEF---KGNYGPHLIIVP 1058 (2239)
Q Consensus 1007 eGLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lie~---k~~~GP~LIVVP 1058 (2239)
.+|..++. -+..+.-.+|+-+.|+|||..++.++...... .+..+++++|.-
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~ 149 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT 149 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 45666663 33444556899999999998888777653211 011356777774
No 314
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=29.55 E-value=2.1e+02 Score=31.58 Aligned_cols=60 Identities=23% Similarity=0.189 Sum_probs=38.0
Q ss_pred hcccHHHHH-HHHHHHHH------hcCCeEEEEEccHHHHHHHHHHHHHc----CCeEEeecCCCCHHHHH
Q 000101 1324 KSCGKLWIL-DRILIKLQ------RTGHRVLLFSTMTKLLDILEEYLQWR----QLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1324 ~~SGKLelL-drIL~kLk------atGhKVLIFSQ~t~~LDILed~L~~r----Giky~RLDGsts~eeRq 1383 (2239)
..+||-.+. .-++..+. ..+.++||.+.....+.-+.+.+... ++.+..++|+.......
T Consensus 71 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 141 (236)
T 2pl3_A 71 TGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 141 (236)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHH
Confidence 357887642 22333332 35778999999988877776666543 47888889987654433
No 315
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=29.30 E-value=1.1e+02 Score=42.55 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=63.6
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHH----HcCC----eEEeecCCCCHHHHHHHHHHHhcCCCC
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQL----VYRRIDGTTSLEDRESAIVDFNSHDSD 1395 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~----~rGi----ky~RLDGsts~eeRqeiL~~FNs~ds~ 1395 (2239)
..|||-..+.-++..+...+.++||.+..+..+.-+.+.|. ..++ .+..++|+++..++.+.++.+..
T Consensus 80 TGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---- 155 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---- 155 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----
T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----
Confidence 35788866666666666778899999999888766666554 3366 78999999998888777777764
Q ss_pred ccEEEEeccccccccC-CCcCceEEE
Q 000101 1396 CFIFLLSIRAAGRGLN-LQSADTVII 1420 (2239)
Q Consensus 1396 ~~VfLLSTrAGGeGLN-LqaADtVIi 1420 (2239)
+.|++.+....-.-+. |...++||+
T Consensus 156 ~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 4455555433332222 556666664
No 316
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=29.10 E-value=1.7e+02 Score=31.58 Aligned_cols=80 Identities=18% Similarity=0.102 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc---C-CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000101 1327 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR---Q-LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1402 (2239)
Q Consensus 1327 GKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r---G-iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLS 1402 (2239)
.++....+|+.+....|+||+|+|.....++.|-+.|=.. . ++.. +.|.-. ..... |+|+
T Consensus 23 ~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~-~~~~~~--------------~~~~P-V~L~ 86 (150)
T 3sxu_A 23 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHN-LAGEGP--------------RGGAP-VEIA 86 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEE-ETTCSS--------------TTCCS-EEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCc-cCCCCC--------------CCCCC-EEEe
Confidence 3667778899999999999999999999999999888422 2 3333 334322 11223 4555
Q ss_pred ccccccccCCCcCceEEEcCCCC
Q 000101 1403 IRAAGRGLNLQSADTVIIYDPDP 1425 (2239)
Q Consensus 1403 TrAGGeGLNLqaADtVIifDppW 1425 (2239)
+.-. ......+++|+++..+
T Consensus 87 ~~~~---~~~~~~~vLinL~~~~ 106 (150)
T 3sxu_A 87 WPQK---RSSSRRDILISLRTSF 106 (150)
T ss_dssp CTTS---CCCSCCSEEEECCSSC
T ss_pred CCCC---CCCCcCCEEEECCCCC
Confidence 4221 1223578999999887
No 317
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=28.17 E-value=98 Score=40.10 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=58.5
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
.+||-.+. +|+-+. .+.++||.+.....+.-..+.|...|+.+..++|+++..++..++..+......+.|++++..
T Consensus 69 GsGKTl~~--~lpal~-~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 69 GGGKSLCY--QLPALC-SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp TSCTTHHH--HHHHHT-SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CChHHHHH--HHHHHH-cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 46675432 233333 355899999999999888888988899999999999999998888888544456667666654
Q ss_pred c
Q 000101 1405 A 1405 (2239)
Q Consensus 1405 A 1405 (2239)
.
T Consensus 146 ~ 146 (591)
T 2v1x_A 146 K 146 (591)
T ss_dssp H
T ss_pred H
Confidence 3
No 318
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=28.16 E-value=1e+02 Score=45.58 Aligned_cols=50 Identities=16% Similarity=-0.016 Sum_probs=35.8
Q ss_pred HHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH
Q 000101 1009 LQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061 (2239)
Q Consensus 1009 LqwLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL 1061 (2239)
|.-|+. -+..+.+.+|+-..|+|||..+++++..... ..+.+++|....+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccc
Confidence 455543 2345677899999999999999999876553 3457788876543
No 319
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=27.51 E-value=91 Score=36.10 Aligned_cols=47 Identities=9% Similarity=-0.145 Sum_probs=28.5
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1009 LqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
|.-+..-+..+.-.+|+-..|+|||..+..++..+.. . ...+++++.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-~-~G~~v~~~~ 71 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT-A-MGKKVGLAM 71 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH-T-SCCCEEEEE
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-H-cCCeEEEEe
Confidence 4444433344445678889999999877666655442 1 122677765
No 320
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=27.47 E-value=1.8e+02 Score=27.69 Aligned_cols=90 Identities=13% Similarity=0.012 Sum_probs=48.5
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCC--cCceEE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ--SADTVI 1419 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLq--aADtVI 1419 (2239)
.|..|..++.....+..+ ....+..+.+|-.++..+-..+++.++.......+++++...... ...- .|+.+
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~- 97 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEY- 97 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEE-
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccce-
Confidence 466666555544444433 345677777776655433344555554323455667776543222 2221 23333
Q ss_pred EcCCCCCcchHHHhhhhhc
Q 000101 1420 IYDPDPNPKNEEQAVARAH 1438 (2239)
Q Consensus 1420 ifDppWNP~~dlQAiGRAh 1438 (2239)
+--|+++....+++.++.
T Consensus 98 -l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 98 -VVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp -EECCSSTHHHHHHHHHHT
T ss_pred -EECCCCHHHHHHHHHHHh
Confidence 345788888888877664
No 321
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=27.32 E-value=3.1e+02 Score=31.17 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=54.2
Q ss_pred cccHHHH-HHHHHHHHHh------cCCeEEEEEccHHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHHhcCC
Q 000101 1325 SCGKLWI-LDRILIKLQR------TGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHD 1393 (2239)
Q Consensus 1325 ~SGKLel-LdrIL~kLka------tGhKVLIFSQ~t~~LDILed~L~~----rGiky~RLDGsts~eeRqeiL~~FNs~d 1393 (2239)
.+||-.+ +.-++..+.. .+.++||.+.....+.-+.+.|.. .++.+..+.|+.........+ .. .
T Consensus 101 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~ 176 (262)
T 3ly5_A 101 GSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GN-G 176 (262)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HH-C
T ss_pred CCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cC-C
Confidence 4778754 4444444432 578899999998887766666654 467788899988765544333 22 1
Q ss_pred CCccEEEEecc------c-cccccCCCcCceEEE
Q 000101 1394 SDCFIFLLSIR------A-AGRGLNLQSADTVII 1420 (2239)
Q Consensus 1394 s~~~VfLLSTr------A-GGeGLNLqaADtVIi 1420 (2239)
+. ||++|. . ...++++...+.||+
T Consensus 177 --~~-Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 177 --IN-IIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp --CS-EEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred --CC-EEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 33 455552 1 122466777776665
No 322
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=27.19 E-value=1e+02 Score=39.42 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=18.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYL 1043 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~L 1043 (2239)
+...+|.-+.|+|||..+-++...+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4456899999999997776554433
No 323
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=26.77 E-value=1.4e+02 Score=32.88 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=42.3
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc-----ccccCCC
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA-----GRGLNLQ 1413 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~---rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAG-----GeGLNLq 1413 (2239)
.+.++||.+.....+.-+.+.+.. .++....+.|+.....+.. .+.. .+.|++.+.... ...+++.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~iiv~Tp~~l~~~~~~~~~~~~ 166 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DISK---GVDIIIATPGRLNDLQMNNSVNLR 166 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHHS---CCSEEEECHHHHHHHHHTTCCCCT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---HhcC---CCCEEEECHHHHHHHHHcCCcCcc
Confidence 577899999999988888887766 3778888888876554333 2332 233444443222 2245566
Q ss_pred cCceEEE
Q 000101 1414 SADTVII 1420 (2239)
Q Consensus 1414 aADtVIi 1420 (2239)
..++||+
T Consensus 167 ~~~~lVi 173 (228)
T 3iuy_A 167 SITYLVI 173 (228)
T ss_dssp TCCEEEE
T ss_pred cceEEEE
Confidence 6666665
No 324
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=26.77 E-value=77 Score=30.98 Aligned_cols=96 Identities=10% Similarity=-0.077 Sum_probs=54.3
Q ss_pred hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcC--CCCccEEEEeccccccccCCC--cCc
Q 000101 1341 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGRGLNLQ--SAD 1416 (2239)
Q Consensus 1341 atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~--ds~~~VfLLSTrAGGeGLNLq--aAD 1416 (2239)
..|..|..+......++.+ ....+..+.+|-.++..+-..+++.++.. ...+.|++++...-..-...- .|+
T Consensus 25 ~~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~ 100 (127)
T 3i42_A 25 MLGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFD 100 (127)
T ss_dssp HTTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCS
T ss_pred HcCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhH
Confidence 3466666666555544444 44567777787666555555666666653 455667777654332211111 133
Q ss_pred eEEEcCCCCCcchHHHhhhhhcccCC
Q 000101 1417 TVIIYDPDPNPKNEEQAVARAHRIGQ 1442 (2239)
Q Consensus 1417 tVIifDppWNP~~dlQAiGRAhRIGQ 1442 (2239)
. ++--|.++..+.+++.++++-+.
T Consensus 101 ~--~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 101 F--YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp E--EEESSCCHHHHHHHHHHHC----
T ss_pred H--heeCCCCHHHHHHHHHHhhccCC
Confidence 3 44568889999988888877543
No 325
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=26.66 E-value=2.3e+02 Score=36.40 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh----CCCCCeEEEe----chHHHHHHHHHHHHHCCCCc
Q 000101 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK----GNYGPHLIIV----PNAVLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k----~~~GP~LIVV----P~SLLsQW~~Ef~KwaPslk 1077 (2239)
+.+++.|+.+-.-..-+|++ .-|+|||..++..|....... +..+-++|+| ..+.+..+.+++...----+
T Consensus 150 iraID~l~PigrGQR~~I~g-~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~ 228 (510)
T 2ck3_A 150 IKAVDSLVPIGRGQRELIIG-DRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKY 228 (510)
T ss_dssp CHHHHHHSCCBTTCBCEEEE-STTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGG
T ss_pred ceeeccccccccCCEEEEec-CCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCccc
Confidence 56677666544444444555 589999999887777665421 1122334433 56778888888876432234
Q ss_pred eEEEecch
Q 000101 1078 CIYYVGAK 1085 (2239)
Q Consensus 1078 vvvy~Gsk 1085 (2239)
.+++..+.
T Consensus 229 tvvV~ata 236 (510)
T 2ck3_A 229 TIVVSATA 236 (510)
T ss_dssp EEEEEECT
T ss_pred ceEEEECC
Confidence 44444443
No 326
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=26.46 E-value=9.8e+02 Score=30.44 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe----chHHHHHHHHHHHH
Q 000101 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV----PNAVLVNWKSELHK 1071 (2239)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV----P~SLLsQW~~Ef~K 1071 (2239)
.++.-|..+.. +...+|.-.-|+|||..+..++.......+. +.|++ ....+..+..+|..
T Consensus 140 r~ID~L~pi~k-Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~---i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 140 KVVDLLAPYIK-GGKIGLFGGAGVGKTVLIQELIHNIAQEHGG---ISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHHHSCEET-TCEEEEECCSSSCHHHHHHHHHHHHHHHTCC---CEEEEEESSCHHHHHHHHHHHHH
T ss_pred hHHHHHhhhcc-CCEEEEECCCCCCccHHHHHHHhhhhhccCc---EEEEeeeccCchHHHHHHHHhhh
Confidence 46766655443 4556788899999998887777655432222 22222 34556666666654
No 327
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=26.27 E-value=1.2e+02 Score=38.25 Aligned_cols=48 Identities=4% Similarity=-0.252 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1009 LqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
|..++.-+..+.-.+|+...|+|||..++.++..... ....++|++.-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~ 279 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAML 279 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEES
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEec
Confidence 4555543444445689999999999988888776643 12358888884
No 328
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=26.12 E-value=1.3e+02 Score=28.30 Aligned_cols=93 Identities=13% Similarity=0.077 Sum_probs=50.1
Q ss_pred hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCC--CCccEEEEeccccccccCCCcCceE
Q 000101 1341 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD--SDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1341 atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~d--s~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
..|..|..+......+..+. ...+..+.++-.++..+-..+++..+... ..+.+++++...-.. ..-.+...
T Consensus 23 ~~g~~v~~~~~~~~~~~~l~----~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~ 96 (119)
T 2j48_A 23 AAGFKVIWLVDGSTALDQLD----LLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQAS 96 (119)
T ss_dssp HTTCEEEEESCHHHHHHHHH----HHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCS
T ss_pred hCCcEEEEecCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHH
Confidence 35677776665555554443 34566777776554333345555555422 345666666543322 21112222
Q ss_pred EEcCCCCCcchHHHhhhhhcc
Q 000101 1419 IIYDPDPNPKNEEQAVARAHR 1439 (2239)
Q Consensus 1419 IifDppWNP~~dlQAiGRAhR 1439 (2239)
-++.-|.++....+++.++.+
T Consensus 97 ~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 97 AILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EECSSCSTTHHHHHHHHTTCC
T ss_pred HhccCCCCHHHHHHHHHHHhc
Confidence 334557788888887777644
No 329
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=26.08 E-value=1.1e+02 Score=38.13 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=51.4
Q ss_pred hcccHHHHHHHHHHHHHhc-----CCeEEEEEccHHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHHhcCCC
Q 000101 1324 KSCGKLWILDRILIKLQRT-----GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDS 1394 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkat-----GhKVLIFSQ~t~~LDILed~L~~----rGiky~RLDGsts~eeRqeiL~~FNs~ds 1394 (2239)
..+||-.+..-.+...... +.++||.+.....+.-+.+.|.. .++.+..++|+++...+...+. .
T Consensus 31 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~---- 104 (556)
T 4a2p_A 31 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI--E---- 104 (556)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH--H----
T ss_pred CCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh--C----
Confidence 3578876544444333332 67899999988776665555544 4899999999987655433221 1
Q ss_pred CccEEEEecccccc----c-c-CCCcCceEEE
Q 000101 1395 DCFIFLLSIRAAGR----G-L-NLQSADTVII 1420 (2239)
Q Consensus 1395 ~~~VfLLSTrAGGe----G-L-NLqaADtVIi 1420 (2239)
.+.|++.+....-. | + ++...++||+
T Consensus 105 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 105 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred CCCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 13355555444332 1 3 5667777776
No 330
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=26.03 E-value=1.1e+02 Score=35.99 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=22.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV 1057 (2239)
.+.-..|.|||-.+..+...+.. ..+.++++.
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~ 133 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVA 133 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---cCCeEEEec
Confidence 45578999999888777665543 245677766
No 331
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=24.84 E-value=84 Score=38.90 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=53.3
Q ss_pred hcccHHHHHHHHHHHHHhc-----CCeEEEEEccHHHHHHHHHHH----HHcCCeEEeecCCCCHHHHHHHHHHHhcCCC
Q 000101 1324 KSCGKLWILDRILIKLQRT-----GHRVLLFSTMTKLLDILEEYL----QWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1394 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkat-----GhKVLIFSQ~t~~LDILed~L----~~rGiky~RLDGsts~eeRqeiL~~FNs~ds 1394 (2239)
..+||-....-.+...... +.++||.+.....+.-+.+.| ...++.+..++|+++...+...+. .
T Consensus 28 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~---- 101 (555)
T 3tbk_A 28 TGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII--E---- 101 (555)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH--H----
T ss_pred CCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh--c----
Confidence 3478876644444333332 778999999877665544444 444899999999986554432221 1
Q ss_pred CccEEEEeccccccc-----c-CCCcCceEEE
Q 000101 1395 DCFIFLLSIRAAGRG-----L-NLQSADTVII 1420 (2239)
Q Consensus 1395 ~~~VfLLSTrAGGeG-----L-NLqaADtVIi 1420 (2239)
.+.|++.+....-.- + ++...++||+
T Consensus 102 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 102 DNDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred CCCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 133555554443321 2 4556677665
No 332
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=24.22 E-value=1.3e+02 Score=36.88 Aligned_cols=52 Identities=15% Similarity=0.037 Sum_probs=34.0
Q ss_pred HHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH
Q 000101 1007 VGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061 (2239)
Q Consensus 1007 eGLqwLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL 1061 (2239)
..|+.++. -+..+.-.+|.-+.|+|||..++.++..+.. ..+++++|.....
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s 100 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHA 100 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccc
Confidence 45666653 2333334577889999999888887766543 3457788876543
No 333
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=24.20 E-value=64 Score=45.44 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=67.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---CCCCeEEEechHHHH-HHHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG---NYGPHLIIVPNAVLV-NWKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~---~~GP~LIVVP~SLLs-QW~~Ef~Kwa 1073 (2239)
+.+|-+-|..++.. .+.+.++...-|+|||.+.+.=|.+++.... ....+|||+++.... .....+...+
T Consensus 8 ~~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp --CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 34789999998752 2456688888999999988887777775322 335689999976443 3333333322
Q ss_pred CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----hhcccCCceEEEecccc
Q 000101 1074 PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQ 1131 (2239)
Q Consensus 1074 Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s~L~kikWd~VIIDEAH 1131 (2239)
...- ...++. ..+... ...-.++.|+|+..+.... .....+...+-|+||..
T Consensus 82 ~~~~----~~~~~~-~~~~~~-~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~ 137 (1232)
T 3u4q_A 82 EKEL----VQRPGS-LHIRRQ-LSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTE 137 (1232)
T ss_dssp HHHH----HHSTTC-HHHHHH-HHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHH
T ss_pred HHHh----hcCcch-HHHHHH-HhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHH
Confidence 1000 000000 011111 1112357889998886542 12223344445788754
No 334
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=23.58 E-value=79 Score=46.73 Aligned_cols=58 Identities=16% Similarity=-0.032 Sum_probs=42.7
Q ss_pred HHHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000101 1006 IVGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2239)
Q Consensus 1006 leGLqwLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~ 1066 (2239)
...|.+++. -+..+.-.+|+-+.|+|||..++.++..+.. ..+++|+|.-.....+|.
T Consensus 717 ~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~---~g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 717 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH
T ss_pred ChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECCCcHHHHH
Confidence 345777775 4555666799999999999998888876653 345889988666666664
No 335
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=23.50 E-value=2.2e+02 Score=30.56 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=41.5
Q ss_pred hcccHHHH-HHHHHHHHH-----hcCCeEEEEEccHHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHH
Q 000101 1324 KSCGKLWI-LDRILIKLQ-----RTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1324 ~~SGKLel-LdrIL~kLk-----atGhKVLIFSQ~t~~LDILed~L~~r--Giky~RLDGsts~eeRqe 1384 (2239)
..+||-.. +.-++..+. ..+.++||.+.....+.-+.+.+... ++.+..++|+........
T Consensus 47 TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (207)
T 2gxq_A 47 TGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKE 115 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHH
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHH
Confidence 35788765 444444432 24678999999988888777777655 467888888877554433
No 336
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=23.43 E-value=1.8e+02 Score=37.04 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
.+||-.+. +++-+.. +.++||.+.....+.-..+.|...|+.+..++|+.+..++..++..+..+ .+.+++++..
T Consensus 50 GsGKTl~~--~lp~l~~-~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~--~~~ilv~Tpe 124 (523)
T 1oyw_A 50 GGGKSLCY--QIPALLL-NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTG--QIRLLYIAPE 124 (523)
T ss_dssp HHHHHHHH--HHHHHHS-SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT--CCSEEEECHH
T ss_pred CcHHHHHH--HHHHHHh-CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEECHH
Confidence 46775422 2333333 46899999999999988899999999999999999999888888888764 3456666654
Q ss_pred cc
Q 000101 1405 AA 1406 (2239)
Q Consensus 1405 AG 1406 (2239)
..
T Consensus 125 ~l 126 (523)
T 1oyw_A 125 RL 126 (523)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 337
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.11 E-value=1.9e+02 Score=28.68 Aligned_cols=96 Identities=17% Similarity=0.102 Sum_probs=56.1
Q ss_pred hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhc--CCCCccEEEEecccccccc--CCCcCc
Q 000101 1341 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS--HDSDCFIFLLSIRAAGRGL--NLQSAD 1416 (2239)
Q Consensus 1341 atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs--~ds~~~VfLLSTrAGGeGL--NLqaAD 1416 (2239)
..|..|..+......++.+ ....+..+.+|-.++..+-..++..++. ....+.|++++...-..-+ ..-.+.
T Consensus 28 ~~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g 103 (140)
T 3grc_A 28 KGGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLA 103 (140)
T ss_dssp HTTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTC
T ss_pred HCCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcC
Confidence 3466776666555544444 4456777888776665555666776665 3345667777754322111 222222
Q ss_pred eEEEcCCCCCcchHHHhhhhhccc
Q 000101 1417 TVIIYDPDPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1417 tVIifDppWNP~~dlQAiGRAhRI 1440 (2239)
..-++--|.++..+..++.++.+-
T Consensus 104 ~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 104 VSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp CCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCHHHHHHHHHHHHHh
Confidence 333445678888888888877653
No 338
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=22.95 E-value=50 Score=38.81 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=19.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 000101 1018 NKLNGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa 1041 (2239)
.+.+.+|..+.|+|||..+-++..
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHHHHHHH
Confidence 366789999999999987766544
No 339
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=22.75 E-value=1.4e+02 Score=39.82 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=50.6
Q ss_pred hcccHHHHHHHHHHHHHhc-----CCeEEEEEccHHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHHhcCCC
Q 000101 1324 KSCGKLWILDRILIKLQRT-----GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDS 1394 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkat-----GhKVLIFSQ~t~~LDILed~L~~----rGiky~RLDGsts~eeRqeiL~~FNs~ds 1394 (2239)
..+||-.+..-.+...... +.++||.|.....+.-+.+.|.. .++.+..++|+.+...+...+ +.
T Consensus 272 TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~--~~---- 345 (797)
T 4a2q_A 272 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV--IE---- 345 (797)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHH--HH----
T ss_pred CCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHh--hC----
Confidence 3578876644444443333 77999999988776665555443 499999999998765543322 12
Q ss_pred CccEEEEecccccc-----cc-CCCcCceEEE
Q 000101 1395 DCFIFLLSIRAAGR-----GL-NLQSADTVII 1420 (2239)
Q Consensus 1395 ~~~VfLLSTrAGGe-----GL-NLqaADtVIi 1420 (2239)
.+.|++.+....-. .+ .+...++||+
T Consensus 346 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 346 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred CCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 23355554433321 12 4556677665
No 340
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=22.14 E-value=1e+02 Score=33.24 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHHHHHh------cCCeEEEEEccHHHHHH-HHHHHHH---cCCeEEeecCCCCH
Q 000101 1325 SCGKLWILDRILIKLQR------TGHRVLLFSTMTKLLDI-LEEYLQW---RQLVYRRIDGTTSL 1379 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLka------tGhKVLIFSQ~t~~LDI-Led~L~~---rGiky~RLDGsts~ 1379 (2239)
.+||-.+...++..+.. .+.++||+|.....++- +.+.+.. .++.+..++|+...
T Consensus 58 GsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~ 122 (216)
T 3b6e_A 58 GSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQL 122 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---C
T ss_pred CCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCccc
Confidence 35665554444333221 26799999998877665 4444432 36788888887653
No 341
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=21.96 E-value=1.8e+02 Score=34.76 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=45.4
Q ss_pred HHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCccEEEEeh
Q 000101 1040 IAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTY 1107 (2239)
Q Consensus 1040 Ia~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTY 1107 (2239)
+..++......+++||.|+.. .+......+.+. ++.+..++|. ...|......+..+..+|+|+|-
T Consensus 266 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 266 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp HHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 334444344567899999876 455555555553 5678888886 44677777778888999999995
No 342
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=21.80 E-value=1.9e+02 Score=28.18 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=56.5
Q ss_pred CCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc-----cc-cCCCcCc
Q 000101 1343 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG-----RG-LNLQSAD 1416 (2239)
Q Consensus 1343 GhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGG-----eG-LNLqaAD 1416 (2239)
+..|..++.....+.. +... +..+.+|-.++..+-.++++.++.......|++++..... .- ...-.+.
T Consensus 27 ~~~v~~~~~~~~~~~~----~~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 27 FGNVEAFQHPRAFLTL----SLNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp CSCEEEESCHHHHTTS----CCCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred cceeeeecCHHHHHHh----hccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCC
Confidence 4455555544333332 2233 6778888877766667778777765566677777754431 10 1112233
Q ss_pred eEEEcCCCCCcchHHHhhhhhcccCCc
Q 000101 1417 TVIIYDPDPNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1417 tVIifDppWNP~~dlQAiGRAhRIGQk 1443 (2239)
..-++.-|+++..+.+++.++..-+..
T Consensus 102 ~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 102 VINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp EEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred cceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 334455788999999999888765543
No 343
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=21.52 E-value=2.8e+02 Score=35.75 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe----chHHHHHHHHHHHHHCCCCceEEE
Q 000101 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV----PNAVLVNWKSELHKWLPSVSCIYY 1081 (2239)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV----P~SLLsQW~~Ef~KwaPslkvvvy 1081 (2239)
+.+++.|+.+-.-..-+|+++ -|+|||..++..|... ...+-++|+| ..+.+..+.++|...----+.+++
T Consensus 150 ikaID~l~PigrGQR~~Ifg~-~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV 224 (513)
T 3oaa_A 150 YKAVDSMIPIGRGQRELIIGD-RQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVV 224 (513)
T ss_dssp CHHHHHHSCCBTTCBCEEEES-SSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEE
T ss_pred eeeeccccccccCCEEEeecC-CCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEE
Confidence 567777766444444456655 8999998876665431 2233333443 667888888888775433344444
Q ss_pred ecc
Q 000101 1082 VGA 1084 (2239)
Q Consensus 1082 ~Gs 1084 (2239)
.++
T Consensus 225 ~at 227 (513)
T 3oaa_A 225 VAT 227 (513)
T ss_dssp EEC
T ss_pred EEC
Confidence 444
No 344
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=21.45 E-value=3.2e+02 Score=26.90 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=51.7
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhc--CCCCccEEEEeccccccc-cCCCcCceE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS--HDSDCFIFLLSIRAAGRG-LNLQSADTV 1418 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs--~ds~~~VfLLSTrAGGeG-LNLqaADtV 1418 (2239)
.|..|..+......++.+ ....+..+.+|-.++..+-..+++.++. ....+.||+++......- ...-.+...
T Consensus 30 ~g~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~ 105 (142)
T 3cg4_A 30 AGFHIISADSGGQCIDLL----KKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVV 105 (142)
T ss_dssp TTCEEEEESSHHHHHHHH----HTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEE
T ss_pred CCeEEEEeCCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCcc
Confidence 366666555544444433 3455677777765544334455666654 345566777765432221 112222333
Q ss_pred EEcCCCCCcchHHHhhhhhccc
Q 000101 1419 IIYDPDPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1419 IifDppWNP~~dlQAiGRAhRI 1440 (2239)
-++.-|.++....+++.++.+.
T Consensus 106 ~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 106 DYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 3445577888888888777553
No 345
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=20.87 E-value=2.6e+02 Score=28.14 Aligned_cols=82 Identities=9% Similarity=-0.117 Sum_probs=40.0
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-ccceEEEe
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLL 1155 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~rRLLL 1155 (2239)
+++++......+..+...+........|.+..........+....+++||+|-.-- ......+.+.|+.. ..-..+++
T Consensus 22 ~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~ii~l 100 (150)
T 4e7p_A 22 KVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMP-VKTGLEVLEWIRSEKLETKVVVV 100 (150)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCS-SSCHHHHHHHHHHTTCSCEEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCC-CCcHHHHHHHHHHhCCCCeEEEE
Confidence 34444444444443333333222223333333333344556667899999994321 11233455555543 34456778
Q ss_pred cCCC
Q 000101 1156 TGTP 1159 (2239)
Q Consensus 1156 TGTP 1159 (2239)
|+..
T Consensus 101 s~~~ 104 (150)
T 4e7p_A 101 TTFK 104 (150)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 8764
No 346
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=20.54 E-value=1.1e+02 Score=36.01 Aligned_cols=37 Identities=19% Similarity=0.074 Sum_probs=26.2
Q ss_pred HHHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHH
Q 000101 1006 IVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAY 1042 (2239)
Q Consensus 1006 leGLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~ 1042 (2239)
..+|++++. -+..+.-.+|+-+.|+|||..++.++..
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455677763 3334444689999999999888877764
No 347
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=20.48 E-value=1.6e+02 Score=35.41 Aligned_cols=53 Identities=15% Similarity=-0.072 Sum_probs=32.4
Q ss_pred HHHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH---hCCCCCeEEEec
Q 000101 1006 IVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEF---KGNYGPHLIIVP 1058 (2239)
Q Consensus 1006 leGLqwLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lie~---k~~~GP~LIVVP 1058 (2239)
..+|..++. -+..+.-.+|+-+.|+|||..++.++...... .+..+++++|.-
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~ 164 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDT 164 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEES
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 345666663 23334445899999999998887776542210 013457777764
No 348
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=20.41 E-value=45 Score=44.83 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=16.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALI 1040 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALI 1040 (2239)
+.+.+|.-+.|+|||..+-++.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4456899999999997765553
No 349
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=20.09 E-value=4.2e+02 Score=26.14 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=49.5
Q ss_pred CCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCC--CCccEEEEecccccc----ccCCCcCc
Q 000101 1343 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD--SDCFIFLLSIRAAGR----GLNLQSAD 1416 (2239)
Q Consensus 1343 GhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~d--s~~~VfLLSTrAGGe----GLNLqaAD 1416 (2239)
...|..+......++.+ ....+..+.+|-.++..+-..++..++... ..+.||+++...-.. .+... |+
T Consensus 26 ~~~v~~~~~~~~a~~~~----~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g-~~ 100 (140)
T 3n53_A 26 EYLVIESKNEKEALEQI----DHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSG-AD 100 (140)
T ss_dssp TSEEEEESSHHHHHHHH----HHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCC-CS
T ss_pred cceEEEeCCHHHHHHHH----hcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcC-CC
Confidence 35566555555555544 344677888887777666667777776543 556677777543222 22221 33
Q ss_pred eEEEcCCCCCcchHHHhhhhhcc
Q 000101 1417 TVIIYDPDPNPKNEEQAVARAHR 1439 (2239)
Q Consensus 1417 tVIifDppWNP~~dlQAiGRAhR 1439 (2239)
.+ +--|+++..+..++.++.+
T Consensus 101 ~~--l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 101 DY--LTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp EE--EESSCCHHHHHHHHHHHHH
T ss_pred ee--eeCCCCHHHHHHHHHHHHh
Confidence 33 3357888888888887765
No 350
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=20.09 E-value=2.1e+02 Score=28.95 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=23.3
Q ss_pred hhcccCCceEEEecccccccChhhHHHHHhhcc-ccceEEEecCCC
Q 000101 1115 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGTP 1159 (2239)
Q Consensus 1115 s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~rRLLLTGTP 1159 (2239)
..+....+++||+|-.-- ......+.+.++.. ..-..+++|+..
T Consensus 55 ~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 55 ELIKAHLPDVALLDYRMP-GMDGAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp HHHHHHCCSEEEEETTCS-SSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCeEEEEEccC
Confidence 344445788888884211 11233444555543 333567778764
No 351
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=20.07 E-value=1.8e+02 Score=37.23 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe----chHHHHHHHHHHHHHCCCCceEEE
Q 000101 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV----PNAVLVNWKSELHKWLPSVSCIYY 1081 (2239)
Q Consensus 1006 leGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV----P~SLLsQW~~Ef~KwaPslkvvvy 1081 (2239)
+.+++.|+.+-.-..-+|++ .-|+|||..++..|.... ..+-++|+| ..+.+..+.+++...----+.+++
T Consensus 150 iraID~l~PigrGQR~~Ifg-~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV 224 (502)
T 2qe7_A 150 IKAIDSMIPIGRGQRELIIG-DRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVV 224 (502)
T ss_dssp CHHHHHSSCCBTTCBCEEEE-CSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEE
T ss_pred eeecccccccccCCEEEEEC-CCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEE
Confidence 45666665544433334555 589999988876665432 233233433 567888888888774333344444
Q ss_pred ecchh
Q 000101 1082 VGAKD 1086 (2239)
Q Consensus 1082 ~Gskd 1086 (2239)
..+.+
T Consensus 225 ~atad 229 (502)
T 2qe7_A 225 TASAS 229 (502)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 44433
Done!