BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000102
         (2239 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From The
            Protozoan Parasite T. Brucei
 pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From The
            Protozoan Parasite T. Brucei
          Length = 478

 Score = 32.0 bits (71), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 2057 QPSWLRP-KPAFKSSNNTSKDSSGFDREIAESLQNDLDHMQLPDTVRWRIQAAIPILLPS 2115
            Q   L+P   AF+ + N S     F  EI   LQN  D + L   +  +++ +IP+L  S
Sbjct: 375  QGYLLKPMTEAFEKNPNISNLMCAFQTEIRAGLQNYRDMVAL---ITSKLEVSIPVLSAS 431

Query: 2116 VRCSLTCQPPSVPVAALASLQ 2136
            +        P++    L SLQ
Sbjct: 432  LNYVTAMFTPTLKYGQLVSLQ 452


>pdb|3S4W|B Chain B, Structure Of The Fanci-Fancd2 Complex
          Length = 1323

 Score = 30.8 bits (68), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 13/85 (15%)

Query: 1392 DPNANMSNDILNSSSKVASGRTSKVTAAISALVVGAVLHGVTSLERMVTVFRLKEGLDVI 1451
            DPN       L+   ++  G+ S V      ++V  +LH VT    +  +  L+E L+V 
Sbjct: 221  DPN------FLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQ 274

Query: 1452 QFV-------RSTKSNSNGSARSIG 1469
            QF+         +K  S G A S G
Sbjct: 275  QFILPSRIQASQSKLKSKGLASSSG 299


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,056,434
Number of Sequences: 62578
Number of extensions: 2540650
Number of successful extensions: 5545
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5537
Number of HSP's gapped (non-prelim): 16
length of query: 2239
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2125
effective length of database: 7,839,445
effective search space: 16658820625
effective search space used: 16658820625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)