BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000102
(2239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|H3K2Y6|MED12_ARATH Mediator of RNA polymerase II transcription subunit 12 OS=Arabidopsis
thaliana GN=MED12 PE=1 SV=1
Length = 2235
Score = 2580 bits (6686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1363/2263 (60%), Positives = 1682/2263 (74%), Gaps = 97/2263 (4%)
Query: 5 QRSTQLTPYKLKCDKESLNSRLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVRE 64
+R LTPYKLKC+K+ LNSRLGPPDFHP T N PEE LT+EYVQ GYKETV+GL+E E
Sbjct: 42 RRPPPLTPYKLKCEKDGLNSRLGPPDFHPPTSNSPEENLTKEYVQFGYKETVDGLKESEE 101
Query: 65 ISLTQAQTFNKPVVLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQ 124
I L+Q TF+KPVV KC+EA+RKCLRAINESRA KRKAGQVYGVPLS SLL KPG FPEQ
Sbjct: 102 IILSQVHTFSKPVVHKCKEAVRKCLRAINESRALKRKAGQVYGVPLSGSLLCKPG-FPEQ 160
Query: 125 RPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTY 184
R CGEE +K+WIE LSQQHKRLRSLAD++P GYR+++LFEVLIRNNVPLLRATWFIKVTY
Sbjct: 161 RSCGEETKKRWIESLSQQHKRLRSLADNIP-GYRRKTLFEVLIRNNVPLLRATWFIKVTY 219
Query: 185 LNQVRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQ 244
LNQVR A SG DK Q SR E WTKDVI+YLQ+LLDE SRN+S Q +RDRSPQ
Sbjct: 220 LNQVRPSPAAISSGTPDKTQASRCEQWTKDVIEYLQYLLDELLSRNSSFPAQQTRDRSPQ 279
Query: 245 TLYTGSPQQRSDPAAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLKDK 304
LYTGS Q+ S + + EE SLHFKWWYMVRL+QWH AEGLL P+ I++WVL L++K
Sbjct: 280 MLYTGSMQKNSPASTSLYGEETSLHFKWWYMVRLLQWHHAEGLLFPNLIVDWVLKLLQEK 339
Query: 305 ELLEILQLVLPIIYGVLETVVSSQTYVRSLVGIATHFIREPSPGGSDLVDNSRRAYTISA 364
E+ EILQL+LPI+YGVLE++V SQTYV+SLV IA FI+EP+PGGSDLVDNSRRAYT+SA
Sbjct: 340 EIFEILQLLLPIVYGVLESIVLSQTYVQSLVAIAVRFIQEPAPGGSDLVDNSRRAYTLSA 399
Query: 365 LAEMLRYLILAVPDTFVALDCFPLPSCVVSYAANDGNFVSKASEDVGKMKNYSTDAICVF 424
L EM+RYL+LA PDTFVA D FPLP V + ND ++ SKA E++ K+++ S + F
Sbjct: 400 LIEMVRYLVLAAPDTFVASDFFPLPPSVAACGPNDVSYTSKAYENLEKLRSNSAEISAQF 459
Query: 425 RGKAVDAQYQSLSFDNVISAIQRRADNLAKDASPGYPGHSVAKAVQALDKALLQGDIREA 484
+G+ V ++++ LSFD IS IQR AD+LAK AS GYP H+VAKAVQALDKAL GDIR A
Sbjct: 460 QGRGVLSRFEFLSFDYTISTIQRSADDLAKIASAGYPQHNVAKAVQALDKALSDGDIRAA 519
Query: 485 YKHLFEDLCDAALDESWIAEVSPCLRSSLKWIGTVSLSSVCSVFFICEWATCDFRDFRTV 544
Y +LFEDLC+ A+DE+WI +VSPCLRSSL+WIG +S S VCSVFF+ EWATCDFRDFR
Sbjct: 520 YSYLFEDLCNGAVDEAWITDVSPCLRSSLRWIGAISTSFVCSVFFLIEWATCDFRDFRAG 579
Query: 545 PPHGMKFTGRKDFSQIYVAIRLLKQKIRDLHTPPRRKSESTLGIIDNLAKGSRQRNNYAN 604
P +KF+GRKD SQ+Y+ I+LLKQKI LG KG RNN+
Sbjct: 580 VPKDIKFSGRKDCSQVYLVIQLLKQKI--------------LGGEFTARKGKNCRNNFL- 624
Query: 605 RNFQGNGYEIKNNANRLDGLRINSSDIFETPGPLHDIIVCWIDQHEIHKREGVKRVQHFI 664
++ G S D FE+PGPLHDIIVCWIDQHE+HK G KR+Q +
Sbjct: 625 ------------GVSKPSG----SMDAFESPGPLHDIIVCWIDQHEVHK-GGAKRLQLLV 667
Query: 665 MELVRAGIFYPQAYVRQLMVSGILDM--NGLDLNRRRRHHRILKVLPGLFLRVALEEARI 722
EL+R+GIF P AYVRQL+VSG++D+ +D RR RHHRILK LPG F+ LEEA++
Sbjct: 668 FELIRSGIFNPIAYVRQLIVSGMIDVIQPAVDPERRMRHHRILKQLPGCFVHETLEEAQL 727
Query: 723 AEGSQLSEAIHVYSNERRLVLHELLFDQSIYVNVAAQNQKRHMAGGRDGASPSLADQWKT 782
G +LSEA+ YSNERRL+L ELL ++ Y N + ++ +S
Sbjct: 728 FGGDKLSEAVRTYSNERRLLLRELLVEKGKYWNNLVLSDQKSKKISTSLSSVIFPRACNA 787
Query: 783 IQPTTGISSGRSGKSDADIEELKASIAVILQLPSSSATSADSGLDESQGSVKRSLGAVSS 842
+ G + KS DI ELK I+ +LQ P S DE Q SVKRS G+V S
Sbjct: 788 KSNSKG--PRKHTKSSVDIRELKERISALLQFPGMSCGVETPVRDEFQNSVKRSSGSVYS 845
Query: 843 KMDLSEGTPGCEDCKRVKRQKLCEDRSSVLQISSPIHSDDEDLWWVRKGPKPLE-SYKAD 901
KMD E TPGCEDC+R KR K+ +++SS Q +SPI SD+ED WW++KG K +E S K D
Sbjct: 846 KMDQPEATPGCEDCRRAKRPKMNDEKSSCYQGNSPIASDEEDNWWIKKGSKTVESSLKVD 905
Query: 902 PPLKSTKQVSRGRQKTVRRTQSLAQLAAARIEGSQGASTSHVCDNKGSCPHHKTGVEGET 961
P ++ TKQV RGRQK R+TQSLAQL AARIEGSQGASTSHVCDNK SCPHH GVEGE
Sbjct: 906 PQIEITKQVPRGRQKMARKTQSLAQLQAARIEGSQGASTSHVCDNKVSCPHHGPGVEGEN 965
Query: 962 LKSMDGVRTACYGDIVSIGKALKKLRYVEKRTVTVWLISIARQHIEEAEKTAAKVGQFNR 1021
K +D RT+ D+VS+G +LK+L++V+KR++ VWL + RQ +EE +K++ +VGQFNR
Sbjct: 966 QKVVDVFRTSTPVDMVSVGNSLKQLQFVDKRSIAVWLTTAVRQLVEEPQKSSVRVGQFNR 1025
Query: 1022 SFVPVDGRISGRWRLSEDELSAILYFMDVCDDLVSAAKFLLWLLPKVLNSPSSTINSGRN 1081
PV+ + + RW+L DEL +IL+ +D+ DLVSA KFLLWLLPK ++PS + GRN
Sbjct: 1026 G-APVEEKNTIRWKLGADELYSILFLLDISLDLVSAVKFLLWLLPKANSTPSFAVQGGRN 1084
Query: 1082 ILMLSRNAENHACGVGEAFLLSSLRRYENIIIATDLIPEALSATMHRAAQVMASNGRVSG 1141
++ + RN EN+ C +GEA L+SSLRRYENI+++ DL+PEA++A M+RAA +M+SNG++SG
Sbjct: 1085 LVTVPRNVENNMCEIGEAILVSSLRRYENILLSADLVPEAMTALMNRAASLMSSNGKISG 1144
Query: 1142 SAAYGYARYLLKKYGNMASVIEWEKNFKATCDKRLLSELESGRSLDGELGLPLGVPAGIE 1201
SAA Y RY+LK+YG++ SV+EW NFKAT +K+LLSEL+ RS +GE G PLGVPAG++
Sbjct: 1145 SAALVYTRYILKRYGSLPSVVEWHNNFKATSEKKLLSELDHTRSGNGEYGNPLGVPAGVD 1204
Query: 1202 DPDDYLRQKIS--GGQLSRVGLSMRDVVHRHMEEAFHYFYDKERKLFAAGSPRNPAIDKS 1259
+PDDYLR+KIS G + SRVGLSMRDV+ RH+EEA HY +KL G+ + +K+
Sbjct: 1205 NPDDYLRKKISIGGARPSRVGLSMRDVLQRHVEEATHYL----KKLIGTGTMKASLAEKN 1260
Query: 1260 DDESQIAQQIIIGLMDCFRQTGGAAQEGDPSLLSSAVSAIVGNVIPTMVKIHDFTAGSNY 1319
DD Q+AQQI++GLMDC RQTGGAAQEGDPSL+SSAVSAI+ +V ++ +I DF+ G+ Y
Sbjct: 1261 DDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSAIINSVGLSVARITDFSLGNIY 1320
Query: 1320 QNYASTTGSLSFARRILRIYITCLCLLKEALGERQSRVFEIALATEASCALARVFTPGKA 1379
QN+ S S + AR ILRI+ITCLCLLKEALGERQSRVFEIALATE+S AL VF P K
Sbjct: 1321 QNHPSGVDSSNIARYILRIHITCLCLLKEALGERQSRVFEIALATESSTALTGVFAPVKG 1380
Query: 1380 ARSQFQSSPEAHDPNANMSN-DILNSSSKVASGRTSKVTAAISALVVGAVLHGVTSLERM 1438
+R Q Q SPE++D NAN S D+ N + K+A R +K+TAA+SALV+G++ HGV +LER+
Sbjct: 1381 SRGQHQLSPESYDSNANNSTIDMSNGTGKMALSRATKITAAVSALVIGSITHGVITLERI 1440
Query: 1439 VTVFRLKEGLDVIQFVRSTKSNSNGSARSIGTFKLDNSIEVHVHWFRLLVGNCRTVSDGL 1498
V + RLK+ LD +QFVR TKS+SNGSARS+G K+++ IEV+VHWFRLLVGNC+TVS+GL
Sbjct: 1441 VGLLRLKDYLDFVQFVRRTKSSSNGSARSMGASKVESPIEVYVHWFRLLVGNCKTVSEGL 1500
Query: 1499 VVEFLGEPSIVALSRMQRMLPLSLVFPPAYLIFAFVLWRPFI--LNNSLAVREDIHQMYQ 1556
V+E +GE S+VA+SRMQRMLPL LVFPPAY I AFVLWRPF+ N++ +V ED H++YQ
Sbjct: 1501 VLELVGESSVVAISRMQRMLPLKLVFPPAYSIIAFVLWRPFVSNSNSNSSVHEDTHRLYQ 1560
Query: 1557 SLTMAINDAIRHLPFRDVCLRDCQGFYNLVTADSTDAEFAAMLELNGLDLQLKSMAFVPL 1616
SLTMA +D I+HLPFRDVC RD QG Y L+ ADSTDAEFA++ E +GLD+ LKS+AF PL
Sbjct: 1561 SLTMAFHDVIKHLPFRDVCFRDTQGLYELIVADSTDAEFASVFESHGLDMHLKSVAFAPL 1620
Query: 1617 RARLFLNAIIDCKMPSSLFKPEDFNRVSGHTESKSHRAENEAKLLDKLVHVLDSLQPAKF 1676
RARLFLN++IDCK+PSS + E G +E+K+ N KL+DKLV VLD LQPAKF
Sbjct: 1621 RARLFLNSLIDCKVPSSGYSHE------GVSEAKNRHQGNGTKLVDKLVSVLDCLQPAKF 1674
Query: 1677 HWQWVELRLLLNEQALIDRLENHEMSLAEAIRSLSPSPEKAAASENENNFIEIILTRLLV 1736
HWQWVELRLLLNEQAL ++LENH+M L +AIRS P+ EK ASENE NFI+I+LTRLLV
Sbjct: 1675 HWQWVELRLLLNEQALAEKLENHDMPLTDAIRSSCPTSEKPDASENEKNFIQILLTRLLV 1734
Query: 1737 RPDAAPLFSELVHLFGRSLEDSMLLQAKWFLGGHDVLFGRKTIRQRLVNIAESKGLSTKA 1796
RPDA PLFSE+VHLFGRS+EDSML QA+WFL G DVLFGRKTIRQ+L+ + ESKGL TK
Sbjct: 1735 RPDAVPLFSEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGRKTIRQKLIIVGESKGLPTKP 1794
Query: 1797 QFWKPWGWVNSGFGPGLN---RGDKKKLEATSLEEGEVVEEGIDSKRHGKGSNP-LFDAE 1852
QFWKPWGW NS + G K+K E TS+EEGEV+EEG S+ K P + D
Sbjct: 1795 QFWKPWGWCNSSSSDHITANKAGKKRKFEITSIEEGEVIEEGSGSR---KVLLPRVLDEN 1851
Query: 1853 GTSIGQQHVTERAFIELVLPCIDQSSDDSRNTFANDLIKQLNNIEQQISAVTR---GANK 1909
S+G TERAF++LVLPCIDQSSD+SR+TF N+L++Q +NIEQQ+S+VT +NK
Sbjct: 1852 SPSVGYGITTERAFVQLVLPCIDQSSDESRSTFVNELVRQFSNIEQQLSSVTNRSTTSNK 1911
Query: 1910 LTGSVPSGIEVPSNKGSNRKSIRGGSPGLARRLAA-TADPA-PPSPAALRASMSLRLQFL 1967
G+ SG E+ SNKGS RK +RGGSP LARR +A T D + PPSPAALRASMSLRLQFL
Sbjct: 1912 QMGTASSGSEISSNKGSTRKGLRGGSPSLARRSSANTTDTSPPPSPAALRASMSLRLQFL 1971
Query: 1968 LRLLPLIYTDGEPSGRNMRYLLASVILRLLGSRVVHEDADLSFYPMQSPQ---SKREVES 2024
LRLLP+I GEPS +N R+ LAS I+RLLGSRVV+ED Y + SP+ SK E ES
Sbjct: 1972 LRLLPVIC--GEPSFKNTRHALASTIVRLLGSRVVYED-----YAVCSPRSELSKAETES 2024
Query: 2025 LPEASSVPSADFSGESLFDRLLLVLYGLLSSCQPSWLRPKPAFKSSNNTSKDSSGFDREI 2084
+ SS+ AD S E LFDRLL VL+GLLS+ QP WL+P+P SSN +SKD + FDR+
Sbjct: 2025 TIDPSSM--ADLSSEVLFDRLLFVLHGLLSNHQPKWLKPRP---SSNESSKDFTLFDRDA 2079
Query: 2085 AESLQNDLDHMQLPDTVRWRIQAAIPILLPSVRCSLTCQPPSVPVAALASLQPSISVSGA 2144
AESLQN+L MQLPDT+RWRIQAA+PILLPS+RCSL+CQP SVP AL +QPS S + A
Sbjct: 2080 AESLQNELSRMQLPDTIRWRIQAAMPILLPSLRCSLSCQPHSVPPTALTLVQPSGSTAAA 2139
Query: 2145 SPGNLNLPQRNPVPLARSATNT--GKSKPIPL----QQDSDME--IDPWTLLEDGAGSGP 2196
QRN +++S T GK KP L QQ++D +DPWTLLED G+
Sbjct: 2140 GTN-----QRNSPAISKSGTAAAQGKLKPTMLAPHQQQEADNTDVVDPWTLLED--GTSS 2192
Query: 2197 SSSNTAAIGSGDQANLQAASWLKGAIRVRRTDLTYIGAVDDDS 2239
S++ A S D ANL+A WLKGA+RVRRTDLTY+G+VDDDS
Sbjct: 2193 GLSSSNASNSSDMANLRATCWLKGAVRVRRTDLTYVGSVDDDS 2235
>sp|Q54U49|MED12_DICDI Putative mediator of RNA polymerase II transcription subunit 12
OS=Dictyostelium discoideum GN=med12 PE=3 SV=2
Length = 2731
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 139/288 (48%), Gaps = 33/288 (11%)
Query: 18 DKESLNSRLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPV 77
DK+ L LG PDF+P E+TL +E++ G+ E + +E + S + + F+ P
Sbjct: 356 DKKELGPDLGVPDFYPLDDKSKEDTLPQEFILGGFCERYQH-DECKSSS-SIFKNFDFP- 412
Query: 78 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIE 137
K +E + + + + ++ +K+GQ P+ + K V PEQ+ R+ W+
Sbjct: 413 --KVKEQLLQSIYQVEWKKSSTQKSGQP---PVMNKSGNKRPV-PEQKAWSANHRESWVL 466
Query: 138 GLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLS 197
L+ ++ L+ LA VPHGY+ +L ++ + N VPL+RATW+ K+ Y N +H +
Sbjct: 467 KLAG-NEPLQKLASSVPHGYKGETLLKMFLDNQVPLIRATWYTKIVYGNMPKHKTV---E 522
Query: 198 GAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQTLYTGSPQQRSDP 257
+ D WTK ++ L L+ RN + S S + G +
Sbjct: 523 PSND---------WTKTIVQSLFALI-----RNTTGENNSSGSSSSNNVLGG------NS 562
Query: 258 AAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLKDKE 305
+ + + S + Y+ RL++W+ +EGLL ++ +++ L + +
Sbjct: 563 GSGVVKKATSSYTGILYIERLIKWNFSEGLLNKDILLSMLIDHLNETD 610
>sp|A1CJ92|SRB8_ASPCL Mediator of RNA polymerase II transcription subunit 12
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=srb8 PE=3 SV=1
Length = 1591
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 30 DFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVV--LKCREAIRK 87
DF P T N PE+ L + + GY + + +S ++ T + LK R + +
Sbjct: 208 DFLPWTGNHPEDVLNEQTAKQGYYDRTQ-------VSQNESNTARPSLYAQLKHRSGL-Q 259
Query: 88 CLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVF--PEQRPCGEEFRKKWIEGLSQQHKR 145
L ++ + +KR+ S++T P F P + + R+ W+ L+
Sbjct: 260 MLSSVFAAALEKRQG---------HSMVTAPSTFKPPPRVTLTDNKREAWLRDLANPTVP 310
Query: 146 LRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDKIQL 205
LR L+ +PHG R R L + + VP+ RA W K N++R SGA + +
Sbjct: 311 LRRLSRTIPHGIRGRVLLDQCLTKWVPVGRAVWLAKCVGANEIRAFKRKGTSGA---LAI 367
Query: 206 SRTEIWTKDVIDYLQHLLD 224
W +D +Q LD
Sbjct: 368 GLEAKWVRDWTTNVQQFLD 386
>sp|Q0CBX9|SRB8_ASPTN Mediator of RNA polymerase II transcription subunit 12
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=srb8 PE=3 SV=2
Length = 1583
Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 25/224 (11%)
Query: 6 RSTQLTPYKLKCDKES-LNSRLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVRE 64
+ Q TPY ++C + + DF P T N PE+ L + + G+ + +
Sbjct: 185 KKVQTTPYHIECPSVAPVLKGQKVADFSPWTGNHPEDVLNEQTAKQGHYDRTQ------- 237
Query: 65 ISLTQAQTFNKPVV--LKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVF- 121
+S ++ T + LK R + + L ++ + +KR+ S +L+ P F
Sbjct: 238 VSQNESNTARPSLYAQLKHRSGL-QMLSSVFAAALEKRQ---------SHNLVNAPSTFK 287
Query: 122 -PEQRPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFI 180
P + + R+ W+ L+ LR L+ +PHG R ++L + + +P+ RA W
Sbjct: 288 PPPRVTLTDNKREAWLRDLANPSVPLRRLSRTIPHGIRGKALLDQCLSKWIPVNRAVWLA 347
Query: 181 KVTYLNQVRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLD 224
K N++R SGA + + W ++ ++Q L+
Sbjct: 348 KCVGANEIRAFKRKGTSGA---VVIGLEAKWVREWTAHVQQFLE 388
>sp|Q4WWL0|SRB8_ASPFU Mediator of RNA polymerase II transcription subunit 12
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=srb8 PE=3 SV=2
Length = 1617
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 30 DFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVV--LKCREAIRK 87
DF P N PE+ L + + GY + + +S ++ T + LK R + +
Sbjct: 208 DFSPWMGNHPEDVLNEQTAKQGYYDRTQ-------VSQNESNTARPSLYAQLKHRSGL-Q 259
Query: 88 CLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVF--PEQRPCGEEFRKKWIEGLSQQHKR 145
L ++ + +KR+ +++T P F P + + R+ W+ L+ +
Sbjct: 260 ILSSVFAAALEKRQG---------HNMVTAPSTFKPPPRVTLTDNKREAWLRDLANPNVP 310
Query: 146 LRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDKIQL 205
LR L+ +PHG R R L + + VP+ RA W K N++R SGA + +
Sbjct: 311 LRKLSRTIPHGIRGRVLLDQCLTKWVPVGRAVWLAKCVGANEIRAFKRKGTSGA---LTI 367
Query: 206 SRTEIWTKDVIDYLQHLLD 224
W +D +Q L+
Sbjct: 368 GLEAKWVRDWTANVQQFLE 386
>sp|A1D887|SRB8_NEOFI Mediator of RNA polymerase II transcription subunit 12
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=srb8 PE=3 SV=1
Length = 1612
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 30 DFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVV--LKCREAIRK 87
DF P N PE+ L + + GY + + +S ++ T + LK R + +
Sbjct: 208 DFSPWMGNHPEDVLNEQTAKQGYYDRTQ-------VSQNESNTARPSLYAQLKHRSGL-Q 259
Query: 88 CLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVF--PEQRPCGEEFRKKWIEGLSQQHKR 145
L ++ + +KR+ +++T P F P + + R+ W+ L+ +
Sbjct: 260 ILSSVFAAALEKRQG---------HNMVTAPSTFKPPPRVTLTDNKREAWLRDLANPNVP 310
Query: 146 LRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDKIQL 205
LR L+ +PHG R R L + + VP+ RA W K N++R SGA + +
Sbjct: 311 LRKLSRTIPHGIRGRVLLDQCLTKWVPVGRAVWLAKCVGANEIRAFKRKGTSGA---LAI 367
Query: 206 SRTEIWTKDVIDYLQHLLD 224
W +D +Q L+
Sbjct: 368 GLEAKWVRDWTANVQQFLE 386
>sp|Q2U513|SRB8_ASPOR Mediator of RNA polymerase II transcription subunit 12
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=srb8 PE=3 SV=2
Length = 1594
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 30 DFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVV--LKCREAIRK 87
DF P N PE+ L + + G+ + + +S ++ T + LK R + +
Sbjct: 207 DFSPWIGNHPEDVLNEQTAKQGHYDRTQ-------VSQNESNTARPSLYAQLKHRSGL-Q 258
Query: 88 CLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVF--PEQRPCGEEFRKKWIEGLSQQHKR 145
L ++ + +KR+ + SL+T P F P + + R+ W+ L+
Sbjct: 259 MLSSVFAAALEKRQ---------NHSLVTAPSTFKPPPRVTLTDNKREAWLRDLANPSVP 309
Query: 146 LRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDKIQL 205
LR L+ +PHG R ++L + + +P+ RA W K N++R A G + L
Sbjct: 310 LRKLSRTIPHGIRGKALLDQCLNKGIPVNRAVWLAKCVGANEIR---AFKRKGTSGTLAL 366
Query: 206 SRTEIWTKDVIDYLQHLLD 224
W +D +Q L+
Sbjct: 367 GLEAKWVRDWTASVQQFLE 385
>sp|P25648|SRB8_YEAST Mediator of RNA polymerase II transcription subunit 12
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRB8 PE=1 SV=2
Length = 1427
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 39/235 (16%)
Query: 29 PDFHPQTPNCPEETLTREYVQNGYK-------ETVEGLEEVREISLTQA----QTFNKPV 77
PDF P E+ + +V G+ E++ V E +TQ+ Q F+K
Sbjct: 31 PDFKPWEHTAAEDQILANFVAKGFYHTPMVNFESISARSSVHESLVTQSNILSQQFDK-- 88
Query: 78 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPL-SDSLLTKPGV-FPEQRPCGEEFRKKW 135
++K RE + +P S + L PG P + + ++ W
Sbjct: 89 IIKIRE-------------------DHINKIPSNSTTTLHGPGFQLPNRITLTDHRKETW 129
Query: 136 IEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANS 195
+ LS H L + +PHG ++R + E +PL RA W IK Y + +
Sbjct: 130 LHELSSSHTSLVKIGKFIPHGLKRRQVIEQCYLKFIPLKRAIWLIKCCYFIEWKSNHKKK 189
Query: 196 LS---GAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQTLY 247
S GA D I + + WT + L+ L+ F N+ + +Q R Q Y
Sbjct: 190 RSNAAGADDAISMHLLKDWTDTFVYILEKLI--FDMTNHYNDSQQLRTWKRQISY 242
>sp|Q6CKZ5|SRB8_KLULA Mediator of RNA polymerase II transcription subunit 12
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SRB8 PE=3
SV=1
Length = 1322
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 27/210 (12%)
Query: 29 PDFHPQTPNCPEETLTREYVQNGYK-------ETVEGLEEVR----EISLTQAQTFNKPV 77
PDF P E+ + +E+V GY ET+ ++ ++S +K +
Sbjct: 26 PDFDPWIHTKEEDKILKEFVAKGYYTASRVNFETISARSALQGSLPKVSSLLGDELSKII 85
Query: 78 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIE 137
++ +E R I +S + +GQ + +P +L ++ R W++
Sbjct: 86 EIREQEINRISTLDIEDSTRFTKWSGQDFHLPNRVTL-------------TDQKRNLWLQ 132
Query: 138 GLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLS 197
LS + LR L VPHG+RKR + E VP+ R W IK Y + + G +
Sbjct: 133 ELSSSNTSLRKLTKSVPHGFRKRHILEQCYTQFVPIYRVIWLIKSCYAIEWK-GMISKAK 191
Query: 198 GAQDKIQLSRT--EIWTKDVIDYLQHLLDE 225
G +L T + WT +++ L+ L+ E
Sbjct: 192 GETTHEELLSTLYKDWTDNMVLILEKLVFE 221
>sp|Q1EAK2|SRB8_COCIM Mediator of RNA polymerase II transcription subunit 12
OS=Coccidioides immitis (strain RS) GN=SRB8 PE=3 SV=2
Length = 1554
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 23/235 (9%)
Query: 9 QLTPYKLKCDKESLNSRLGPP-DFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISL 67
Q TP+ ++ + + G P DF+P + PE++LT + + GY + V+ +S
Sbjct: 179 QTTPFCIEVPEAAPIFDSGKPLDFYPWKGDHPEDSLTDQTAKQGYYDRVQ-------VSQ 231
Query: 68 TQAQTFNKP---VVLKCREAIRKCLRAINESRAQKRKAG-QVYGVPLSDSLLTKPGVFPE 123
++ T +P V LK R + K L ++ + KR++ +V G KP P
Sbjct: 232 NESNT-ARPSLYVQLKHRSGL-KLLSSVFTAAIDKRQSHCRVTGFST-----FKP---PP 281
Query: 124 QRPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVT 183
+ + R+ W+ L+ LR L+ +PHG R R L + + +P+ RA W +K
Sbjct: 282 RVTLTDIKRETWLRDLANPSVPLRRLSRTIPHGIRGRILLDQCVNKAIPIGRAVWLVKCV 341
Query: 184 YLNQVRHGSANSLSGA-QDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQY 237
N++R S A +++ W+ +V +++ ++ + N + + Y
Sbjct: 342 GANEIRAFKRKGTSAAITHSLEVKWVRDWSINVHQFIESVVTACGTPNWASTMSY 396
>sp|Q5B3Y9|SRB8_EMENI Mediator of RNA polymerase II transcription subunit 12
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=srb8 PE=3 SV=2
Length = 1582
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 37/230 (16%)
Query: 6 RSTQLTPYK---------LKCDKESLNSRLGPPDFHPQTPNCPEETLTREYVQNGYKETV 56
+ Q TP++ LK DK + DF P N PE+ L+ + V+ G+ +
Sbjct: 184 KKVQTTPFRVEVPSIAPALKGDKVA--------DFAPWIGNHPEDILSEQTVKQGHYDRT 235
Query: 57 EGLEEVREISLTQAQTFNKPVV--LKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSL 114
+ +S ++ T + LK R + + L ++ + +KR+ VP +
Sbjct: 236 Q-------VSQNESNTARPSLYAQLKHRSGL-QMLSSVFMAALEKRQNHNTINVPSN--- 284
Query: 115 LTKPGVFPEQRPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLL 174
KP P + + R+ W+ L+ LR L+ +PHG R ++L + + +P+
Sbjct: 285 -FKP---PPRVTLTDNKREAWLRDLANPSVPLRRLSRTIPHGIRGKNLLDQCLSKWIPVN 340
Query: 175 RATWFIKVTYLNQVRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLD 224
RA W +K N++R A G + + W +D +Q L+
Sbjct: 341 RAVWLVKCVGANEIR---ACKRKGTGGTLVVGSEVKWVRDWTSGVQQFLE 387
>sp|Q751D2|SRB8_ASHGO Mediator of RNA polymerase II transcription subunit 12 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=SRB8 PE=3 SV=2
Length = 1358
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 24/210 (11%)
Query: 29 PDFHPQTPNCPEETLTREYVQNGY----KETVEGL-------EEVREISLTQAQTFNKPV 77
PDF P E+ + +V G+ K E + E + +++ A+ F+K V
Sbjct: 29 PDFDPWAHTEIEDKILLSFVAKGHYTSAKVNFESISARSSLQESLPKVAGMLAEQFSKVV 88
Query: 78 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGV-FPEQRPCGEEFRKKWI 136
L+ + I K ES K K + G PG P + ++ R +W+
Sbjct: 89 HLR-EQTINKVSGESEESIRGKAKFTDLAG----------PGFSLPNRVTLTDQRRTQWL 137
Query: 137 EGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSL 196
+ LS + L LA +PHG++++ + E +PL RA W IK +Y + + ++
Sbjct: 138 QELSSPNVSLSKLAKSIPHGFKRKQILEQCYMRQLPLQRAIWLIKSSYSIEWKSLTSKLK 197
Query: 197 SGAQDKIQLSRT-EIWTKDVIDYLQHLLDE 225
G ++ +S+ +WT ++ ++ LL E
Sbjct: 198 PGQTNEGVVSQLYNLWTNSMVSIMERLLFE 227
>sp|Q6FVM9|SRB8_CANGA Mediator of RNA polymerase II transcription subunit 12 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=SRB8 PE=3 SV=1
Length = 1358
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 10/209 (4%)
Query: 29 PDFHPQTPNCPEETLTREYVQNGYKETVE-GLEEVREISLTQAQ--TFNKPVVLKCREAI 85
PDF P E+ + +V GY T + E + S Q + + K E +
Sbjct: 29 PDFDPWKHTKEEDEILLNFVSKGYYSTSKVNFESISARSSLQDSLPKLSSTLSEKFSEVV 88
Query: 86 RKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGV-FPEQRPCGEEFRKKWIEGLSQQHK 144
R R IN + + + +D L P P + + ++ W++ LS +
Sbjct: 89 RIREREINTIKGNSKDG--MAASKFTD--LCGPDFKLPSRLTLTDHRKELWLQELSSPYT 144
Query: 145 RLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQ--DK 202
L + +PHG ++R + E +PL RA W IK Y + + G A + Q DK
Sbjct: 145 PLHKITSFIPHGLKRRQVLEQCYIKQIPLKRAVWLIKCCYSIEWKTGIAKYANSPQEKDK 204
Query: 203 IQLSRTEIWTKDVIDYLQHLLDEFFSRNN 231
+ WT + + L+ L+ E N
Sbjct: 205 FNAHLLKEWTDNFVHILEKLIFEMTQHYN 233
>sp|Q7SGG0|SRB8_NEUCR Mediator of RNA polymerase II transcription subunit 12
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=srb-8 PE=3 SV=1
Length = 1789
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/380 (21%), Positives = 145/380 (38%), Gaps = 79/380 (20%)
Query: 27 GPPDFHPQTP---NCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVVLKCRE 83
G DF P + N PE+ ++ GY E +T + VL
Sbjct: 293 GCADFFPWSGTAGNHPEDQFNDTAIRVGYSEK----------QFVTPETQSAKTVLFHGL 342
Query: 84 AIRKCLRAINESRA----QKRKAGQVYGVPLSDSLLTKPGVF-PEQRPCGEEFRKK-WIE 137
R L A++ A +R AGQV T P F P R + +K+ W++
Sbjct: 343 KQRSGLNALSIFFAGVLWHRRNAGQV----------TAPSTFKPPPRVTLTDTKKEVWLK 392
Query: 138 GLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLS 197
L+ LR L+ +PHG R + L + + NVP+ RA W K N++R + L
Sbjct: 393 DLANSAIPLRKLSRSIPHGVRNKVLLDQCLNKNVPIDRAVWLAKCVGTNELR--TFRRLG 450
Query: 198 GAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQTLYTGSPQQRSDP 257
+ L W KD +++ ++ F
Sbjct: 451 KGNNASVLEGERKWLKDWTLVIENFIERVF------------------------------ 480
Query: 258 AAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLKDKELLEI-LQLVLPI 316
+ E + K Y ++L AEGL+ + ++W ++ L+ ++ + +++
Sbjct: 481 ---FSFGEQNWKAKVNYAIQLAAHLYAEGLMDREHYLDWTVSSLESSHHSQLPMWIIIAQ 537
Query: 317 IYGVLETVVSSQTYVRSL-VGIATHFIREPSPGGSDLVDNSRRAYTISALAEMLRYLILA 375
IY + ++ + Y R L + +H+ + D+ +S L+ +L L++A
Sbjct: 538 IY--WKDLLRLRKYGRRLATALISHYHVIHAHEDRDIY-----VPLLSKLSHLLGTLMVA 590
Query: 376 VPDTFVALDCFPLPSCVVSY 395
P+ FV+ PS V Y
Sbjct: 591 TPENFVS------PSVWVKY 604
>sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcription subunit 12
OS=Drosophila melanogaster GN=kto PE=1 SV=2
Length = 2531
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 43/222 (19%)
Query: 24 SRLGPPDFHPQTPNCPEETLTREYVQNGYKETVE-----GLEEVREISLTQAQTFNKPVV 78
+RLGPPD +PQ E+ LT V++G+ T G ++ ++ F V+
Sbjct: 14 TRLGPPDIYPQDAKQREDELTPTNVKHGFTTTPPLSDEFGTAHNSNVNASKVSAFFSGVL 73
Query: 79 LKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFP--EQRPCGEEFRKKWI 136
K E L + ++ +K++ K +P +R C + W
Sbjct: 74 AKKEE-----LMTLPDTGRKKQQIN------------CKDNFWPVSPRRKCTVD---AWF 113
Query: 137 EGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSL 196
+ L+ +K L SLA P +K +F L N V + RATWFIK++ +A +L
Sbjct: 114 KDLA-GNKPLLSLAKRAPSFNKKEEIFITLCENQVNMQRATWFIKLS--------AAYTL 164
Query: 197 SGAQDKIQ----LSRTEIWTKDVIDYLQHL---LDEFFSRNN 231
S + K + WT ++I +++ L L E++ +N+
Sbjct: 165 SFTESKNKKRSIYDPAAEWTGNMIKFMKELLPKLQEYYQQNH 206
>sp|A3GF47|SRB8_PICST Mediator of RNA polymerase II transcription subunit 12
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=SRB8 PE=3 SV=2
Length = 1654
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 33/238 (13%)
Query: 29 PDF-----HPQTPNCPEETLTRE-----YVQNGYKET-VEGLEEVREISLTQAQTFNKPV 77
PD+ H PN +E ++ Y+ GY ET V E +L QA F+
Sbjct: 77 PDYKPWKDHTALPNDKKEQEHQKLNNAAYLNKGYFETPVVANEYYSARNLIQATVFSSTE 136
Query: 78 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIE 137
C E +++ + + + A K + + + + P P + ++ W++
Sbjct: 137 --NCNEVLKELSQHL--ANAYKTRNEIINKIKYESNNFKIP---PRVTLTASK-KESWLK 188
Query: 138 GLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQV-----RHGS 192
L+ L +A+ +PHG R + L + + +VP+ RA WF K ++ +H S
Sbjct: 189 DLANPDLALSKIAEKIPHGIRNKILIDAVCNKSVPINRALWFTKCVLFGELVALRRKHQS 248
Query: 193 ANSLS---------GAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDR 241
SL+ +K ++ + WT+ V DY+ E + N QY ++
Sbjct: 249 RMSLNSPIPQSLDINTPEKFEIHWLQEWTQQVADYIYKFSKESSNFNTIERKQYYMNK 306
>sp|Q9P6L8|SRB8_SCHPO Mediator of RNA polymerase II transcription subunit 12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srb8 PE=1 SV=2
Length = 1134
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 128 GEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQ 187
E R +W++GLS L SL +PHG + +L++ VP RA WFI+ +N+
Sbjct: 130 SESRRDRWLQGLSDPMVPLSSLIKTIPHGLWGEDILRMLVKFRVPFTRAIWFIRCAGVNE 189
Query: 188 VRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLDEFFS 228
R K+Q + W K+ D L F S
Sbjct: 190 AR--------SFLRKVQTTDITEWVKNWTDVAAGFLISFIS 222
>sp|Q0V6H6|SRB8_PHANO Mediator of RNA polymerase II transcription subunit 12
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=SRB8 PE=3 SV=1
Length = 1547
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 16/205 (7%)
Query: 25 RLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVVLKCREA 84
+LG P+ P + P E + G E+ +L +A NKP ++
Sbjct: 120 KLGVPETVPIPVHFPGEKAADVFPWTGTNA-----EDTLSEALVKAGVSNKPQIMNETNT 174
Query: 85 IRKCLRAINESRAQKRKAGQVYGVPL----SDSLLTKPGVF--PEQRPCGEEFRKKWIEG 138
R L + ++++ ++ L + L P F P + + R+ W+
Sbjct: 175 ARPSLWSNLKNKSGITTLSTLFVAVLEKRQQNGRLQTPNTFKPPPRLTLRDSTREGWLHD 234
Query: 139 LSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSG 198
L+ LR L+ +PHG + L + + N+PL RA W K +N++R A+ G
Sbjct: 235 LANPTVSLRRLSRTIPHGLTGKVLLDQCLNKNIPLPRALWLAKCVGINELR---AHKRKG 291
Query: 199 AQDKIQLSRTEIWTKDVIDYLQHLL 223
+ R WT V +L ++
Sbjct: 292 QAGTVTWGRG--WTSSVEQFLDSVI 314
>sp|A2AGH6|MED12_MOUSE Mediator of RNA polymerase II transcription subunit 12 OS=Mus
musculus GN=Med12 PE=2 SV=1
Length = 2190
Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 25/199 (12%)
Query: 25 RLGPPDFHPQTPNCPEETLTREYVQNGY--KETVEGLEE--VREISLTQAQTFNKPVVLK 80
RLGPPD +PQ P E+ LT V+ G+ + V G E + ++ A+ +
Sbjct: 18 RLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVNFNPAK-----ISSN 72
Query: 81 CREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIEGLS 140
I + LR S +RK SL+ + F + W L+
Sbjct: 73 FSSIIAEKLRCNTLSDTGRRK-----------SLMNQKDNFWLVTARSQSAINTWFTDLA 121
Query: 141 QQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQ 200
K L LA VP +K +F L + VP++RA W IK+T + +A S + +
Sbjct: 122 GT-KPLTHLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMT----CAYYAAMSETKVK 176
Query: 201 DKIQLSRTEIWTKDVIDYL 219
K WT+ + YL
Sbjct: 177 KKNTADPFTEWTQIITKYL 195
>sp|Q6C229|SRB8_YARLI Mediator of RNA polymerase II transcription subunit 12 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SRB8 PE=3 SV=2
Length = 1362
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 115 LTKPGVF--PEQRPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVP 172
+T PG F P + + R+ W++ L+ LR L+ +PHG R + L + +
Sbjct: 123 ITTPGTFKPPPRVTLTDHKREAWLKDLANPAVPLRKLSRTIPHGIRNKVLLDQCCAKRIA 182
Query: 173 LLRATWFIKVTYLNQVR---HGSANSLSGAQDKIQLSRTEIWTKDVIDYLQ 220
RA WF + N++R + + + I L WT+ V+D LQ
Sbjct: 183 PSRAVWFARCVGANELRGLKRKGHHQMGNMSEAIWLQE---WTECVVDVLQ 230
>sp|Q86YW9|MD12L_HUMAN Mediator of RNA polymerase II transcription subunit 12-like protein
OS=Homo sapiens GN=MED12L PE=1 SV=2
Length = 2145
Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 104/295 (35%), Gaps = 69/295 (23%)
Query: 25 RLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVVLKCREA 84
RLGPPD +PQ P E+ LT V+ G+ N+P
Sbjct: 18 RLGPPDVYPQDPKQKEDELTAVNVKQGFN--------------------NQPAFTGDEHG 57
Query: 85 IRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPE---QRPCGEEFRKKWIEGLSQ 141
+ + IN S K G + L++ L K F + ++P W+
Sbjct: 58 SARNI-VINPS-----KIGAYFSSILAEKL--KLNTFQDTGKKKPQVNAKDNYWLVTARS 109
Query: 142 Q------------HKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVT--YLNQ 187
Q +K L LA VP +K +F L + +VP++RATW IK+T Y +
Sbjct: 110 QSAIHSWFSDLAGNKPLSILAKKVPILSKKEDVFAYLAKYSVPMVRATWLIKMTCAYYSA 169
Query: 188 VRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQTLY 247
+ ++ WT+ YL+ L + Y
Sbjct: 170 ISEAKIKKRQAPDPNLE------WTQISTRYLREQLAKI-----------------SDFY 206
Query: 248 TGSPQQRSDPAAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLK 302
+ P V E ++ +W Y +L EG+L + W+L+ L+
Sbjct: 207 HMASSTGDGPVPVPPEVEQAMK-QWEYNEKLAFHMFQEGMLEKHEYLTWILDVLE 260
>sp|Q8BQM9|MD12L_MOUSE Mediator of RNA polymerase II transcription subunit 12-like protein
OS=Mus musculus GN=Med12l PE=1 SV=2
Length = 2157
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 108/298 (36%), Gaps = 75/298 (25%)
Query: 25 RLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVREISLTQAQTFNKPVVLKCREA 84
RLGPPD +PQ P E+ LT V+ G+ N+P
Sbjct: 18 RLGPPDVYPQDPKQKEDELTAVNVKQGFN--------------------NQPAFTGDEHG 57
Query: 85 IRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPE---QRPCGEEFRKKWIEGLSQ 141
+ + IN S K G + L++ L K F + ++P W+
Sbjct: 58 SARNI-VINPS-----KIGAYFSSILAEKL--KLNTFQDTGKKKPQVNAKDNYWLVTARS 109
Query: 142 Q------------HKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVT--YLNQ 187
Q +K L LA VP +K +F L + +VP++RATW IK+T Y +
Sbjct: 110 QSAIHSWFSDLAGNKPLAILAKKVPILSKKEDVFAYLAKYSVPMVRATWLIKMTCAYYSA 169
Query: 188 VRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLL---DEFFSRNNSHSTQYSRDRSPQ 244
+ ++ WT+ YL+ L +F+ +S
Sbjct: 170 ISEAKIKKRQAPDPNLE------WTQISTRYLREQLVKISDFYHMASS------------ 211
Query: 245 TLYTGSPQQRSDPAAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLK 302
TG P V E ++ +W Y +L EG+L + W+L+ L+
Sbjct: 212 ---TG-----DGPVPVPPEVEQAMK-QWEYNEKLAFHMFQEGMLEKHEYLTWILDVLE 260
>sp|Q93074|MED12_HUMAN Mediator of RNA polymerase II transcription subunit 12 OS=Homo
sapiens GN=MED12 PE=1 SV=4
Length = 2177
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 27/166 (16%)
Query: 25 RLGPPDFHPQTPNCPEETLTREYVQNGY--KETVEGLEE--VREISLTQAQ---TFNKPV 77
RLGPPD +PQ P E+ LT V+ G+ + V G E + +S A+ F+ +
Sbjct: 18 RLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVSFNPAKISSNFSSII 77
Query: 78 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIE 137
K R + ++ +K + Q L + + W
Sbjct: 78 AEKLR------CNTLPDTGRRKPQVNQKDNFWLVTAR-------------SQSAINTWFT 118
Query: 138 GLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVT 183
L+ K L LA VP +K +F L + VP++RA W IK+T
Sbjct: 119 DLAGT-KPLTQLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMT 163
>sp|Q5RCU2|MED12_PONPY Mediator of RNA polymerase II transcription subunit 12 OS=Pongo
pygmaeus GN=MED12 PE=2 SV=2
Length = 2181
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 27/166 (16%)
Query: 25 RLGPPDFHPQTPNCPEETLTREYVQNGY--KETVEGLEE--VREISLTQAQ---TFNKPV 77
RLGPPD +PQ P E+ LT V+ G+ + V G E + +S A+ F+ +
Sbjct: 18 RLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVSFNPAKISSNFSSII 77
Query: 78 VLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQRPCGEEFRKKWIE 137
K R + ++ +K + Q L + + W
Sbjct: 78 AEKLR------CNTLPDTGRRKPQVNQKDNFWLVTAR-------------SQSAINTWFT 118
Query: 138 GLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVT 183
L+ K L LA VP +K +F L + VP++RA W IK+T
Sbjct: 119 DLAGT-KPLTQLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKMT 163
>sp|Q2QCI8|MED12_DANRE Mediator of RNA polymerase II transcription subunit 12 OS=Danio
rerio GN=med12 PE=2 SV=1
Length = 2173
Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 26/158 (16%)
Query: 144 KRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTYLNQVRHGSANSLSGAQDKI 203
K L LA VP +K +F L + +VP++R+ W IK+T + +A + + + +
Sbjct: 124 KPLTQLAKKVPIFSKKEEVFGYLAKYSVPVMRSAWMIKMT----CAYHAAITENKMKKRH 179
Query: 204 QLSRTEIWTKDVIDYLQHLLD---EFFSRNNSHSTQYSRDRSPQTLYTGSPQQRSDPAAV 260
+ WT + YL L EF+ ++ S GSP + PA V
Sbjct: 180 VIDPCIEWTPIITKYLWEQLQKVAEFYRQSPSQG-------------CGSPLP-APPAEV 225
Query: 261 INSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVL 298
+ + +W Y +L + +G+L + WVL
Sbjct: 226 ETAMK-----QWEYNEKLAMFMFQDGMLDRHEFLTWVL 258
>sp|Q6BUQ1|SRB8_DEBHA Mediator of RNA polymerase II transcription subunit 12
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=SRB8 PE=3 SV=2
Length = 1661
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 132 RKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIK 181
++ W+ L+ + L ++++ +PHG + + L ++L N+P RA W K
Sbjct: 178 KEAWLRDLANPDEPLSNISNKLPHGIKNKMLVDILCSKNIPTSRALWLTK 227
>sp|Q8BFW7|LPP_MOUSE Lipoma-preferred partner homolog OS=Mus musculus GN=Lpp PE=1 SV=1
Length = 613
Score = 37.0 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 2113 LPSVRCSLTC------QPPSVPVAALASLQPSISVSGASPGNLNLPQRNPVPLARSATNT 2166
L S+ L C +PP +++AS P +S + +PQ+ P+ +AT
Sbjct: 125 LTSILADLECSSPYKPRPPQGSASSIAS--PPVSTPVTGHKRMVIPQQPPL----TATKK 178
Query: 2167 GKSKPIPLQQDSDMEIDPWTLLEDGAGSGPSSSNTAAIGSGDQANLQAAS 2216
+KP P Q + + + P L+ P+S TA+ S N+Q S
Sbjct: 179 SATKPQPAPQAAPIPVTPIGTLKPQPQPVPASYTTASTSSRPTFNVQVKS 228
>sp|Q5M4T8|COAA_STRT2 Pantothenate kinase OS=Streptococcus thermophilus (strain ATCC
BAA-250 / LMG 18311) GN=coaA PE=3 SV=1
Length = 306
Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 16/104 (15%)
Query: 667 LVRAGIF----YPQAYVRQLMVSGILDM--NGLDLNRRRRHHRILKVLPGLFLRVALEEA 720
L+ GI +P++Y L+++ LD NG D+N H I ++PGL +++
Sbjct: 132 LIDKGILNRKGFPESYDMPLLLN-FLDTVKNGGDVNIPVYSHEIYDIVPGLTQKISQPNF 190
Query: 721 RIAEGSQLSEAIHVYSN--ERRLVLHELLFDQSIYVNVAAQNQK 762
I EG I+V+ N +RL + + FD SIY++ +N K
Sbjct: 191 LIVEG------INVFQNPINQRLYMSD-YFDFSIYIDADVKNIK 227
>sp|Q5M079|COAA_STRT1 Pantothenate kinase OS=Streptococcus thermophilus (strain CNRZ
1066) GN=coaA PE=3 SV=1
Length = 306
Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 16/104 (15%)
Query: 667 LVRAGIF----YPQAYVRQLMVSGILDM--NGLDLNRRRRHHRILKVLPGLFLRVALEEA 720
L+ GI +P++Y L+++ LD NG D+N H I ++PGL +++
Sbjct: 132 LIDKGILNRKGFPESYDMPLLLN-FLDTVKNGGDVNIPVYSHEIYDIVPGLTQKISQPNF 190
Query: 721 RIAEGSQLSEAIHVYSN--ERRLVLHELLFDQSIYVNVAAQNQK 762
I EG I+V+ N +RL + + FD SIY++ +N K
Sbjct: 191 LIVEG------INVFQNPINQRLYMSD-YFDFSIYIDADVKNIK 227
>sp|Q03L30|COAA_STRTD Pantothenate kinase OS=Streptococcus thermophilus (strain ATCC
BAA-491 / LMD-9) GN=coaA PE=3 SV=1
Length = 306
Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 16/104 (15%)
Query: 667 LVRAGIF----YPQAYVRQLMVSGILDM--NGLDLNRRRRHHRILKVLPGLFLRVALEEA 720
L+ GI +P++Y L+++ LD NG D+N H I ++PGL +++
Sbjct: 132 LIDKGILNRKGFPESYDMPLLLN-FLDTVKNGGDVNIPVYSHEIYDIVPGLTQKISQPNF 190
Query: 721 RIAEGSQLSEAIHVYSN--ERRLVLHELLFDQSIYVNVAAQNQK 762
I EG I+V+ N +RL + + FD SIY++ +N K
Sbjct: 191 LIVEG------INVFQNPINQRLYMSD-YFDFSIYIDADVKNIK 227
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1
Length = 1026
Score = 34.7 bits (78), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 1603 GLDLQLKSMAFVPLRA-RLFLNAIIDCKMPSSLFKPEDFNRVSGHTESKSHRAENEAKLL 1661
G DL + VP+ R+ + + K+P+ + KP+ R+ G + + R N+ LL
Sbjct: 703 GFDLPKRRWIRVPMTIDRITAISAVRLKVPADIDKPDGQMRLDGMMAAATKRFGNQIPLL 762
Query: 1662 DKLVHVLDSLQPAKFHWQWVELR-LLLNEQALIDRLENHEMSLAEAIRSLSPSPEKAAAS 1720
D + + VE++ L+ E++L RLE H M+ + ++ L E+ +
Sbjct: 763 DPI---------QDMEIKTVEMKELIAREKSLEGRLETHSMTKRDNMKDLKKQFEQKQDA 813
Query: 1721 ENENN 1725
E N
Sbjct: 814 VKELN 818
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 819,531,621
Number of Sequences: 539616
Number of extensions: 35016308
Number of successful extensions: 96291
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 96144
Number of HSP's gapped (non-prelim): 127
length of query: 2239
length of database: 191,569,459
effective HSP length: 134
effective length of query: 2105
effective length of database: 119,260,915
effective search space: 251044226075
effective search space used: 251044226075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)