Query 000102
Match_columns 2239
No_of_seqs 148 out of 186
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 15:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lqo_A Putative glutaredoxin R 30.4 10 0.00035 37.1 -0.1 26 847-874 8-33 (92)
2 1rw1_A Conserved hypothetical 17.7 30 0.001 34.6 0.3 25 847-873 4-28 (114)
3 3rdw_A Putative arsenate reduc 14.9 48 0.0016 33.8 1.0 26 846-873 8-33 (121)
4 3dd7_B PHD, prevent HOST death 14.3 56 0.0019 26.0 1.0 14 1592-1605 3-16 (23)
5 3f0i_A Arsenate reductase; str 14.1 48 0.0016 33.8 0.8 26 846-873 7-32 (119)
6 1s3c_A Arsenate reductase; ARS 13.6 50 0.0017 34.6 0.8 26 847-874 6-31 (141)
7 2kok_A Arsenate reductase; bru 13.1 40 0.0014 34.0 -0.1 26 847-874 9-34 (120)
8 3gkx_A Putative ARSC family re 12.9 46 0.0016 33.9 0.2 27 846-874 7-33 (120)
9 3l4n_A Monothiol glutaredoxin- 12.6 47 0.0016 34.2 0.2 17 847-864 18-34 (127)
10 3fz4_A Putative arsenate reduc 12.5 46 0.0016 33.9 0.1 29 844-874 4-32 (120)
No 1
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=30.38 E-value=10 Score=37.13 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=20.6
Q ss_pred CCCCCCchhhhhhhhhcccccCCCceec
Q 000102 847 SEGTPGCEDCKRVKRQKLCEDRSSVLQI 874 (2239)
Q Consensus 847 ~~~~~gce~c~r~krqkl~~~~~~~~q~ 874 (2239)
++.+++|..|.+||+- | ++++-.|.-
T Consensus 8 vYs~~~Cp~C~~aK~~-L-~~~gi~y~~ 33 (92)
T 2lqo_A 8 IYTTSWCGYCLRLKTA-L-TANRIAYDE 33 (92)
T ss_dssp EEECTTCSSHHHHHHH-H-HHTTCCCEE
T ss_pred EEcCCCCHhHHHHHHH-H-HhcCCceEE
Confidence 6779999999999998 7 566655553
No 2
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=17.66 E-value=30 Score=34.59 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=19.0
Q ss_pred CCCCCCchhhhhhhhhcccccCCCcee
Q 000102 847 SEGTPGCEDCKRVKRQKLCEDRSSVLQ 873 (2239)
Q Consensus 847 ~~~~~gce~c~r~krqkl~~~~~~~~q 873 (2239)
++.+|+|..|++||+- | ++++-.|+
T Consensus 4 iY~~~~C~~C~kak~~-L-~~~gi~~~ 28 (114)
T 1rw1_A 4 LYGIKACDTMKKARTW-L-DEHKVAYD 28 (114)
T ss_dssp EEECSSCHHHHHHHHH-H-HHTTCCEE
T ss_pred EEECCCChHHHHHHHH-H-HHCCCceE
Confidence 4678999999999998 7 55554444
No 3
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=14.93 E-value=48 Score=33.83 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=20.8
Q ss_pred cCCCCCCchhhhhhhhhcccccCCCcee
Q 000102 846 LSEGTPGCEDCKRVKRQKLCEDRSSVLQ 873 (2239)
Q Consensus 846 ~~~~~~gce~c~r~krqkl~~~~~~~~q 873 (2239)
+++.+|+|..|++||+- | ++++-.|+
T Consensus 8 ~iY~~p~C~~c~ka~~~-L-~~~gi~~~ 33 (121)
T 3rdw_A 8 TIYHNPRCSKSRETLAL-V-EQQGITPQ 33 (121)
T ss_dssp EEECCTTCHHHHHHHHH-H-HTTTCCCE
T ss_pred EEEECCCCHHHHHHHHH-H-HHcCCCcE
Confidence 36789999999999998 7 66665554
No 4
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=14.32 E-value=56 Score=25.99 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=12.2
Q ss_pred hHHHHHHHhhcCcc
Q 000102 1592 DAEFAAMLELNGLD 1605 (2239)
Q Consensus 1592 d~efa~~le~~~~d 1605 (2239)
|+|||+++..||..
T Consensus 3 DaEFaaIm~~hg~t 16 (23)
T 3dd7_B 3 DAEFASLFDTLDST 16 (26)
T ss_pred hhHHHHHHHHHhHH
Confidence 89999999998854
No 5
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=14.11 E-value=48 Score=33.75 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=20.5
Q ss_pred cCCCCCCchhhhhhhhhcccccCCCcee
Q 000102 846 LSEGTPGCEDCKRVKRQKLCEDRSSVLQ 873 (2239)
Q Consensus 846 ~~~~~~gce~c~r~krqkl~~~~~~~~q 873 (2239)
+++.+|+|..|++||+- | ++++-.|+
T Consensus 7 ~iY~~p~C~~c~ka~~~-L-~~~gi~~~ 32 (119)
T 3f0i_A 7 VIYHNPKCSKSRETLAL-L-ENQGIAPQ 32 (119)
T ss_dssp EEECCTTCHHHHHHHHH-H-HHTTCCCE
T ss_pred EEEECCCChHHHHHHHH-H-HHcCCceE
Confidence 46789999999999988 7 55655554
No 6
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=13.63 E-value=50 Score=34.64 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=20.6
Q ss_pred CCCCCCchhhhhhhhhcccccCCCceec
Q 000102 847 SEGTPGCEDCKRVKRQKLCEDRSSVLQI 874 (2239)
Q Consensus 847 ~~~~~gce~c~r~krqkl~~~~~~~~q~ 874 (2239)
++.+|+|..|++||+- | ++++-.|+-
T Consensus 6 iY~~p~C~~crkak~~-L-~~~gi~~~~ 31 (141)
T 1s3c_A 6 IYHNPASGTSRNTLEM-I-RNSGTEPTI 31 (141)
T ss_dssp EECCTTCHHHHHHHHH-H-HHTTCCCEE
T ss_pred EEECCCChHHHHHHHH-H-HHcCCCEEE
Confidence 6789999999999998 7 666655554
No 7
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=13.09 E-value=40 Score=33.95 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCCCCCchhhhhhhhhcccccCCCceec
Q 000102 847 SEGTPGCEDCKRVKRQKLCEDRSSVLQI 874 (2239)
Q Consensus 847 ~~~~~gce~c~r~krqkl~~~~~~~~q~ 874 (2239)
++.+|+|..|++||+- | ++++-.|+-
T Consensus 9 iY~~~~C~~C~ka~~~-L-~~~gi~y~~ 34 (120)
T 2kok_A 9 IYGIKNCDTMKKARIW-L-EDHGIDYTF 34 (120)
T ss_dssp EEECSSCHHHHHHHHH-H-HHHTCCEEE
T ss_pred EEECCCChHHHHHHHH-H-HHcCCcEEE
Confidence 6789999999999988 7 555555443
No 8
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=12.91 E-value=46 Score=33.90 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=20.5
Q ss_pred cCCCCCCchhhhhhhhhcccccCCCceec
Q 000102 846 LSEGTPGCEDCKRVKRQKLCEDRSSVLQI 874 (2239)
Q Consensus 846 ~~~~~~gce~c~r~krqkl~~~~~~~~q~ 874 (2239)
+++.+|+|..|++||+- | ++++-.|+-
T Consensus 7 ~iY~~p~C~~c~ka~~~-L-~~~gi~~~~ 33 (120)
T 3gkx_A 7 LFLQYPACSTCQKAKKW-L-IENNIEYTN 33 (120)
T ss_dssp EEEECTTCHHHHHHHHH-H-HHTTCCCEE
T ss_pred EEEECCCChHHHHHHHH-H-HHcCCceEE
Confidence 36789999999999987 7 565554443
No 9
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=12.57 E-value=47 Score=34.22 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.8
Q ss_pred CCCCCCchhhhhhhhhcc
Q 000102 847 SEGTPGCEDCKRVKRQKL 864 (2239)
Q Consensus 847 ~~~~~gce~c~r~krqkl 864 (2239)
+..+++|..|.+||+- |
T Consensus 18 vysk~~Cp~C~~ak~l-L 34 (127)
T 3l4n_A 18 IFSKSTCSYSKGMKEL-L 34 (127)
T ss_dssp EEECTTCHHHHHHHHH-H
T ss_pred EEEcCCCccHHHHHHH-H
Confidence 5568999999999987 7
No 10
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=12.46 E-value=46 Score=33.89 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=22.1
Q ss_pred cccCCCCCCchhhhhhhhhcccccCCCceec
Q 000102 844 MDLSEGTPGCEDCKRVKRQKLCEDRSSVLQI 874 (2239)
Q Consensus 844 ~d~~~~~~gce~c~r~krqkl~~~~~~~~q~ 874 (2239)
|=+++.+|+|..|++||+- | ++++-.|+-
T Consensus 4 Mi~iY~~~~C~~c~ka~~~-L-~~~gi~~~~ 32 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAE-L-DDLAWDYDA 32 (120)
T ss_dssp SEEEEECSSCHHHHHHHHH-H-HHHTCCEEE
T ss_pred eEEEEeCCCChHHHHHHHH-H-HHcCCceEE
Confidence 4457889999999999987 7 666655543
Done!