Query 000103
Match_columns 2224
No_of_seqs 215 out of 273
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 18:24:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1810 Cell cycle-associated 100.0 2E-131 4E-136 1250.7 83.9 1224 478-2170 159-1389(1417)
2 COG5543 Uncharacterized conser 100.0 8.6E-91 1.9E-95 848.7 74.7 919 433-1618 107-1031(1400)
3 PF10350 DUF2428: Putative dea 100.0 2.5E-51 5.5E-56 480.2 24.4 253 1041-1376 1-255 (255)
4 KOG1810 Cell cycle-associated 98.4 4.8E-07 1E-11 120.3 7.6 355 1478-1915 512-884 (1417)
5 PRK09687 putative lyase; Provi 91.3 3.6 7.8E-05 50.6 15.2 92 1714-1850 27-118 (280)
6 PF02985 HEAT: HEAT repeat; I 89.9 0.27 5.9E-06 40.4 2.7 28 1483-1510 1-28 (31)
7 PF01602 Adaptin_N: Adaptin N 88.1 80 0.0017 41.7 25.0 207 1709-1991 266-484 (526)
8 KOG1062 Vesicle coat complex A 82.6 1.9E+02 0.0041 40.3 23.7 242 1453-1739 122-379 (866)
9 PRK13800 putative oxidoreducta 79.2 19 0.00042 51.2 14.5 26 1712-1737 654-679 (897)
10 KOG1824 TATA-binding protein-i 79.1 1.6E+02 0.0034 41.7 21.3 57 1832-1918 579-635 (1233)
11 KOG1241 Karyopherin (importin) 78.1 1.9E+02 0.004 40.2 21.4 162 1333-1514 232-396 (859)
12 PF13513 HEAT_EZ: HEAT-like re 74.0 9.4 0.0002 35.0 6.3 29 1958-1986 25-53 (55)
13 PRK13800 putative oxidoreducta 73.4 24 0.00052 50.3 12.9 55 1713-1792 624-678 (897)
14 KOG2171 Karyopherin (importin) 71.6 51 0.0011 46.9 14.7 182 1777-2037 814-1003(1075)
15 PF02985 HEAT: HEAT repeat; I 69.0 5.9 0.00013 32.7 3.4 25 1965-1989 4-28 (31)
16 PF05004 IFRD: Interferon-rela 60.5 2.9E+02 0.0062 34.9 17.3 112 1712-1851 45-159 (309)
17 KOG2171 Karyopherin (importin) 60.2 5.9E+02 0.013 37.2 21.2 147 694-905 5-151 (1075)
18 PF12717 Cnd1: non-SMC mitotic 59.8 83 0.0018 36.1 11.6 92 1836-1990 1-92 (178)
19 PF13646 HEAT_2: HEAT repeats; 57.8 48 0.001 32.7 8.1 86 1713-1848 2-88 (88)
20 KOG0211 Protein phosphatase 2A 54.2 6.3E+02 0.014 35.9 20.0 146 1334-1524 295-440 (759)
21 PF03378 CAS_CSE1: CAS/CSE pro 52.9 31 0.00068 45.2 7.5 207 368-611 65-288 (435)
22 PF12719 Cnd3: Nuclear condens 52.7 1.9E+02 0.0042 35.9 14.0 116 1822-1991 26-144 (298)
23 KOG0212 Uncharacterized conser 52.3 5.7E+02 0.012 34.8 17.9 345 1212-1674 216-583 (675)
24 PF10508 Proteasom_PSMB: Prote 51.7 7.6E+02 0.016 33.3 24.0 39 1481-1519 118-156 (503)
25 KOG1077 Vesicle coat complex A 50.7 7E+02 0.015 34.9 18.5 107 1712-1856 331-437 (938)
26 PF12830 Nipped-B_C: Sister ch 48.5 2.2E+02 0.0048 33.2 12.7 67 805-899 6-72 (187)
27 PF01602 Adaptin_N: Adaptin N 47.8 8E+02 0.017 32.5 24.0 359 1483-2037 80-441 (526)
28 KOG1058 Vesicle coat complex C 44.4 78 0.0017 43.4 8.9 220 1457-1739 118-346 (948)
29 KOG2023 Nuclear transport rece 43.0 1.1E+03 0.025 32.8 23.1 144 1335-1527 375-523 (885)
30 PF12755 Vac14_Fab1_bd: Vacuol 34.8 34 0.00074 35.9 3.1 30 1482-1511 27-56 (97)
31 KOG1242 Protein containing ada 34.1 2.3E+02 0.0049 38.5 10.8 256 1454-1790 195-478 (569)
32 PF08167 RIX1: rRNA processing 28.2 3.9E+02 0.0084 30.6 10.3 101 97-241 60-163 (165)
33 KOG2160 Armadillo/beta-catenin 28.0 4.6E+02 0.0099 33.8 11.5 141 1823-2027 125-268 (342)
34 PF03224 V-ATPase_H_N: V-ATPas 25.9 5.5E+02 0.012 32.2 12.0 124 1962-2152 106-229 (312)
35 PF13251 DUF4042: Domain of un 25.5 2.5E+02 0.0055 32.9 8.3 117 1715-1849 45-171 (182)
36 PF13646 HEAT_2: HEAT repeats; 24.3 1.8E+02 0.0039 28.6 6.1 55 697-761 3-58 (88)
37 PF08506 Cse1: Cse1; InterPro 23.6 2.1E+02 0.0046 37.0 7.9 140 1332-1506 225-370 (370)
38 KOG1059 Vesicle coat complex A 23.2 8.7E+02 0.019 34.1 13.2 105 695-842 338-444 (877)
39 KOG1077 Vesicle coat complex A 21.3 7.6E+02 0.016 34.5 12.0 69 694-764 330-399 (938)
40 PF12830 Nipped-B_C: Sister ch 20.5 4.4E+02 0.0095 30.8 9.0 154 1889-2080 6-171 (187)
41 PF12333 Ipi1_N: Rix1 complex 20.3 1.5E+02 0.0032 31.5 4.7 21 697-717 15-35 (102)
No 1
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2e-131 Score=1250.75 Aligned_cols=1224 Identities=28% Similarity=0.357 Sum_probs=903.2
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHhhhChhhHhhcCccHHHHHHHHcccCCccccHHHHHHHHHHHHHhhhhccCCCC
Q 000103 478 LQKIASDLLCLGPRCKGRYVPLALLTKRLGAKTLLGMSPDLLSEIVNAYIDDDVCSAATSFLKCFLECLRDECWSSNGIS 557 (2224)
Q Consensus 478 l~~i~~~LL~l~w~~KgKY~~L~~Lv~~lGa~~iL~l~p~ll~ell~aM~d~~v~~aA~~lL~~l~~~L~~e~~~~~~~~ 557 (2224)
...+.-.++++...+||.|.+++.+. .+-++.++.+-+...|+++|...++++..+++++.+|.|.
T Consensus 159 ~~kvv~~~i~l~~~~~~~~~~~a~~p---------~~~~~~l~~l~n~~~~~~v~~~i~s~l~~~~e~~~~e~~~----- 224 (1417)
T KOG1810|consen 159 TLKVVFYLIHLLSYSKGLYEMHAHLP---------DFAQNSLFLLQNISSDTDVVRHISSALLHQVEQHAQEAEQ----- 224 (1417)
T ss_pred HHHHHHHHHHHHhhccccchHhhcCc---------hhhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhh-----
Confidence 34455567777778888888888775 3446666777777788888999999999999999999875
Q ss_pred cchhhHHhcchhHHHHHhhcCchhHHHhhHhhhhhhhhccCcCcHHHHHHhhccCCcccccCCCCCCCcCcchhhhhhhH
Q 000103 558 RGYAVYRGHCLPPFLYGLASGVSKLRSNLNTYALPVLLDMDVDSIFPMLAFVSVVPSEEENGLSYPELDCSSFELKVEQQ 637 (2224)
Q Consensus 558 ~~~~~W~~~Wv~PLl~~L~s~~~~l~~~I~~Y~LP~LfK~dp~sl~~mL~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 637 (2224)
-...|+++|-+-.+ .-+ .+......+..|.+|+||++.|.+ .|+..++..|- ..+
T Consensus 225 -~~~~~~q~~~~~~~-~y~-~~~q~~~~~sifl~~sl~~v~p~~--~~~s~l~~~~~--------------------kd~ 279 (1417)
T KOG1810|consen 225 -FQQVYRQFWDRCAL-AYG-MALQQLKAVSIFLCPSLFGVIPTS--MFVSALKNMPN--------------------KDR 279 (1417)
T ss_pred -HHHHHHHHHHHHHH-HHH-hhHHHHHHHHHHHHHHHhccCchH--HHHHHHhcCCc--------------------ccH
Confidence 23678888876665 221 223456788899999999999944 47888876551 222
Q ss_pred HHHHHHHHHHHHhcccccCcccccccccccccCCcccccccccchhhhhccccccccHHHHHHHHcCCChhHHHHHHHHh
Q 000103 638 VAVFVSLLKVSRSLALAEGDIDLWKNSSVLRTGSKFVTEGSNLYALVCIKGISFKVLVDWLVLALTHADELLRVDAAESL 717 (2224)
Q Consensus 638 l~~LlAlLkvAR~lgLve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~e~L~~aL~H~d~~VRi~ALeLL 717 (2224)
++++++||++|++|+++++... +.++ ....-.-|+|..+|+++++.+
T Consensus 280 -~llls~lkv~~~~~iie~~~~~------------------k~~a--------------~~~~~~k~~d~k~~l~~~~~l 326 (1417)
T KOG1810|consen 280 -GLLLSALKVPEKLQIIEELIAQ------------------KLEA--------------TVLAQVKLPDDKLPLSCFEAL 326 (1417)
T ss_pred -HHHHHHHHhhHHhhhhhhhhhh------------------hhhh--------------HHHHHhhCccccchhhHHHHH
Confidence 8899999999999999988641 1111 133445788889999999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcccccCCchh
Q 000103 718 FLNPKTASLPSHLELTLMKEAVPLNMRSCSTAFQMKWTSLFRKFFSRVRTALERQFKQGSWRPVVSCENSDRTLINGTDT 797 (2224)
Q Consensus 718 ~~SpKtT~ppS~~EL~LIk~fL~~nl~~~s~~~Rq~~~SllKkfl~RlR~s~~r~~k~~~~~~~~~~~ek~~~~~~~~e~ 797 (2224)
+.+||+++|+++.+++.||+.++.+|++.++++|+.+++.+|+|+.|.|+++..+.+..+.. +.++
T Consensus 327 ~l~~k~ss~~~~~~~~~mke~v~~~~~~~d~~~r~~~~ss~r~f~lr~r~s~~si~r~~r~~--------------~~dq 392 (1417)
T KOG1810|consen 327 ILGPKQSSPRRPNLLRGMKEEVEQAFIGLDDHTRLLALSSMRPFFLRNRDSMGSIARYVRSA--------------HSDQ 392 (1417)
T ss_pred HhCcccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHhcccHHHHHhHHHHHHHHHHhccc--------------chHH
Confidence 99999999999999999999999999999999999999999999999999998877765411 1122
Q ss_pred hH-HHHHHHHHHHHHHHHHHhhcccCCCCcchhhhHHHHHHHHHHHcCCCCCCCcccccccccccccCccCCCCcchHHH
Q 000103 798 VI-SKAENLFKFMRWLSCFLFFSCYPSAPYKRKIMAMELILTMMNIWSIAPPQEKLDSVSLESSLYPYNKGITAPNSTLL 876 (2224)
Q Consensus 798 ~~-~~le~~~~Fl~WL~~fL~~sL~PgAsYqRki~ALklL~~Lle~fg~d~~~~k~~~~~~~~~~~pf~~~i~~~~~~~l 876 (2224)
.. ..++..++||.|+++|++..|||+.+||+++++|+++.+++.. |+|.. ++.. -...+..|||+.-+.+.+.+++
T Consensus 393 ~~~~~~e~~~~fl~~l~s~~k~~~~ps~~yqq~l~sl~l~~~~i~f-~vd~~-~p~~-f~~~~~~ypfslvl~~~d~t~l 469 (1417)
T KOG1810|consen 393 LAYLLQEALKRFLFWLVSFRKSRLYPSQEYQQKLISLILTLILISF-GVDMY-GPEF-FSRFPHLYPFSLVLKDLDTTRL 469 (1417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHh-hhccc-Cchh-hcccchhcchHHHhcchhHHHH
Confidence 21 2367789999999999999999999999999999999999987 66552 1110 0112468999996667788999
Q ss_pred HHhhhcCcHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHhhhccccceeccc
Q 000103 877 LVGSIIDSWDRLRESSFRILLHFPSPLPGISSEDMVQKVITWSKKLVCSPRVRESDAGALALRLIFRKYVLDLGWIVRAS 956 (2224)
Q Consensus 877 Lld~L~DsyddVRe~A~~LL~~fPs~l~g~~s~e~l~~Ll~~Al~Ll~S~R~~esDaGA~ll~LLf~kyv~~lg~~~~~s 956 (2224)
++|||.|+||++|++|+++|..|+++--|..+ ++...++.||.++++|+|.++++++|-.++.-..
T Consensus 470 lId~L~dsyd~vr~ls~~iLl~~~s~~~~~s~-~d~~~~~n~~~~l~ts~rs~~~~g~a~~i~~~~~------------- 535 (1417)
T KOG1810|consen 470 LIDSLVDSYDRVRSLSAQILLLLKSLDLGISD-EDGTLLANRAKDLATSVRSRERDGHAPRIQSRNT------------- 535 (1417)
T ss_pred HHHhccCcHHHHHHHHHHHHHHhhcccccCCc-hhHHHHHhhHHHhccchhhHHhcCCCceeEEeee-------------
Confidence 99999999999999999999999986555444 5555677799999999999999998854431100
Q ss_pred ccccccCCCCcccccccccccCcccHHHHHHHHHHHHHHHHHHhhcchhhhhhhccchhHHHHHHHHHhccCcccccccc
Q 000103 957 VNVVCLHPQPQQLKGVGQICKSSAPVVEYIKSLIDWLEVAVKEGERDLSESCENSFVHGILLALRYTFEELDWNSNAVLS 1036 (2224)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~LL~~Le~~l~~ae~DLl~Aa~~spvHG~L~aLRyil~~l~~~s~~~~~ 1036 (2224)
. .....+. .+|..+++++.+.++.++.|+.++++++|+||.+.++||+++++.|++.. .
T Consensus 536 -----------~-------t~~~~p~-~~i~~~~~~l~~~~s~~q~dl~~~~k~n~ihg~lla~~~Ll~~~~~~s~~--~ 594 (1417)
T KOG1810|consen 536 -----------F-------TRAGVPF-SLIDHLIQWLNQLLSELQSDLTECAKNNHIHGTLLAVRHLLQNYKWKSLE--N 594 (1417)
T ss_pred -----------c-------cCCCCce-eHHHHHHHHHHHHHHhhhhhHHHHhhccccccHHHHHHHHHHhcchhhhc--c
Confidence 0 1112333 78899999999999999999999999999999999999999999999872 3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccCCCcccccccccccccCCCccccCcCCcchhhhhcCCCCcCCCCc
Q 000103 1037 GYSEMKCALEKLLELVMRITSLALWVVSA--DAWCLPEDMDDMIIDDNLLLDVPEEMDEPLRSLEDEEQNSKPAQDVRTS 1114 (2224)
Q Consensus 1037 ~~~~wr~~l~~Ll~L~~rI~~~~lwvvss--~~l~lPed~dd~~dd~~~l~~I~de~~~~~~~~E~~~~d~k~~~~~~~~ 1114 (2224)
....|++++.+++.+|..+|.++.+|++. +.|++|++.+...+. +.+. .-++..
T Consensus 595 ~~~~~~eiid~lv~~~lklw~~v~~vvc~dSpeg~lpD~~~~~~~~----------------------~~ts--~~~~~~ 650 (1417)
T KOG1810|consen 595 NQDFWEEIIDELVCTCLKLWLAVRPVVCLDSPEGNLPDILALLTCC----------------------GNTS--ALVDTP 650 (1417)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccccccCCccccCchHHHhhccc----------------------cccc--cccCCc
Confidence 46789999999999999995555555443 334444322111000 0000 012468
Q ss_pred ccchhhhHhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCcchhhhhhhccccCCHHHHHHHHHHHHHHHHhccc
Q 000103 1115 EQVVMVGCWLAMKEVSLLLGTIIRKIPLPINSSSDTVDSGSGTSDAADDLLMTMSDAMLDLKQLEKIGSHFLEVLLKMKH 1194 (2224)
Q Consensus 1115 ~Q~ILs~~WRamKEsSlLLgtLi~~~pL~~~~~~~~~~~~~~~~~~~~~~~~~~s~~lls~eqi~~IG~~~~~~Ll~~RH 1194 (2224)
+|+|++||||++||+|.+|++|+++. . ++.++|.+|++.||++|+.||.+|||
T Consensus 651 ~Qlill~~Wra~Kevs~ll~~Ii~k~-~--------------------------~~~~lt~~qLe~IG~lfl~~LaeikH 703 (1417)
T KOG1810|consen 651 PQLILLGAWRAVKEVSSLLETIIGKP-Q--------------------------QDALLTPAQLEYIGSLFLLQLAEIKH 703 (1417)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhh-c--------------------------cccccCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999973 1 13578999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHHHhhccccchhhhhccCChhHHHHHHHhcCCCCCCCCcHHH
Q 000103 1195 NGAIDKTRAGFTALCNRLLCSNDLRLCRLTESWMEQLMERTVAKGQIVDDLLRRSAGIPAAFIALFLAEPEGAPKKLLPQ 1274 (2224)
Q Consensus 1195 RGAfe~v~~~F~~lC~rL~~s~~~~L~~LP~~WL~~lL~~i~~~~qsv~~lTRRSAGLP~li~aIL~aEp~~~~~~LL~~ 1274 (2224)
||||+++++||+++|+ +++|++++++++|+.||+++|+.+.++++. +||||||+|+++++|+.+|++.++++++++
T Consensus 704 rGAfe~~~~gf~~lC~-f~~s~~~~~~~lp~~wLee~l~~i~~kt~~---itRRSaGlP~ll~al~~te~~~~~k~ll~r 779 (1417)
T KOG1810|consen 704 RGAFESARPGFTALCS-FLQSNESRFPELPELWLEELLEKILAKTSG---ITRRSAGLPFLLTALVETELKLGMKELLPR 779 (1417)
T ss_pred ccchhhccccHHHHHH-HHHhcccccccCcHHHHHHHHHHHHhhccc---chhccCCCCHHHHHHHHhhhcccchhhhHH
Confidence 9999999999999999 999999999999999999999999998887 699999999999999999999989999999
Q ss_pred HHHHHHHHHhhhhhhhhhhcccccccccccCCccccccCCCCCccccccCccccCCCCcchHHHHHHHHHHHcCCCcchh
Q 000103 1275 ALRWLIDVANRSLLDLIENKGAKTTMCEFSHSNQETESAVPPDIYATWNSSKIRDEGVVPTVHAFNILRAAFNDTNLAAD 1354 (2224)
Q Consensus 1275 ~m~~Ll~iA~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~~~~~~~~~e~~s~~~de~~lPqVHALNiLRaIF~Ds~Ls~~ 1354 (2224)
+|.+||.||+.++++. .++++.||||||||||+||++++|+.+
T Consensus 780 ~~~~Ll~ia~~p~~~~-------------------------------------~~~~~~p~VHA~NvmkaIf~~~~LS~~ 822 (1417)
T KOG1810|consen 780 CFCKLLKIAECPLPGE-------------------------------------WGEGDEPRVHAMNVMKAIFTSSILSNE 822 (1417)
T ss_pred HHHHHHHHhcCCCccc-------------------------------------cCCCcchhhhhHHHHHHHHccchhhHH
Confidence 9999999999886431 256779999999999999999999999
Q ss_pred hHHhHHHHHHHHHhccCCCchhhhchHHHHHHHHHHHHhccccCCchhhhhhccchhhhhhcCCChHHHHHHHHHHHHhh
Q 000103 1355 TSAFSAEALIISIRSFSSPYWEIRNSACLAYTALIRRMLGFLNVQKRESARRALTGLEFFHRYPSLHPFIFNELRVITEL 1434 (2224)
Q Consensus 1355 ~~~Yi~~aL~lAi~~F~S~~WaIRNsAlMLFsALi~RifG~~~~~~~~s~r~~~t~~eFF~RYP~L~~fLl~~L~~a~~~ 1434 (2224)
+..|.++|+++||++|+++.|++||||+|||+||++|+||+.++++..+.||++|+.+||+|||+|++||+.+|+.+..+
T Consensus 823 ~sef~s~Al~lAi~~fs~~~W~~RN~atlLfaALi~RvfGv~~s~~~~~~r~~~S~~~FFtkyp~L~~~ll~~Less~a~ 902 (1417)
T KOG1810|consen 823 RSEFQSRALRLAIEGFSHDMWAERNSATLLFAALINRVFGVIRSRLCLDHRNRLSGLEFFTKYPTLHPLLLTELESSDAQ 902 (1417)
T ss_pred HHHHHHHHHHHHHHhcCchHHhhhhhHHHHHHHHHHHHHHhhhHHhhcccccccchhhhhhcCccHHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999888888999999999999999999999999876322
Q ss_pred hcCCCCCCcccccccccccchHHHHHHHhccCCCCCCCCCCCCCCccccHHHHHHHhCCCChHHHHHHHHHhhccCCCCC
Q 000103 1435 LGNASSGQSASNLANVVHPSLCPMLILLCRLKPSALAGESGDDLDPFLFMPFIRRCSTQSNLKVRVLASRALTGLVPNEK 1514 (2224)
Q Consensus 1435 l~~~~s~~~es~~a~~~~psLfPiL~LLSRL~Ps~~~~~~~d~L~~~~F~p~I~rcl~s~~~~VRelAARALasLv~~~~ 1514 (2224)
. +|+. ...-+|+|+|.+||||+|++.+++ .+++.+|+|++++|..+++|+||+|||+++++|+..
T Consensus 903 ~----sgs~------q~s~aL~piLl~LSrL~~~~~~~~---~~~ls~F~p~l~ect~q~~~~vRemAs~vl~~L~~~-- 967 (1417)
T KOG1810|consen 903 L----SGSE------QSSLALWPILLMLSRLYPSAPRSA---TLGLSVFVPFLQECTCQSNLKVREMASLVLLALVDA-- 967 (1417)
T ss_pred C----Cccc------CccccHHHHHHHHHhhcccCCccc---cCCchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH--
Confidence 1 1211 112269999999999999987654 466788999999999999999999999999999876
Q ss_pred hHHHHHHHHHHhhhhcccCCcCccccccCCCCCChhHhHHHHHHHHHHHHhhccccCcchhhhhhHHHHHHHH--hhhcc
Q 000103 1515 LPDVLLNIASELLCVEGQNEAAPVSSLRGTHRASFNLIHGILLQLGSLLDANCRNLVDFSKKDQILGDLIKVL--GNCSW 1592 (2224)
Q Consensus 1515 i~~~i~~Ll~~L~~~~~~~~~~~~~~~~~~~~~s~N~lHG~LLqi~~LL~~~~~~~~d~~~~~~~~~~l~~~l--~~~~w 1592 (2224)
+...+...++.. +.....+|.+||.||++..++.-.... ....+.++++++.+ .-..|
T Consensus 968 ~~e~l~~~~dl~----------------~~q~~~qN~lhg~Ll~l~~Ll~c~~s~----~~~~qvVe~~l~~l~m~v~~w 1027 (1417)
T KOG1810|consen 968 VLEDLRQVLDLK----------------APQGRLQNLLHGLLLLLDNLLACVLSL----LRMHQVVEDILESLRMEVNEW 1027 (1417)
T ss_pred HHHHHHHHHhcc----------------cccccchhHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444421 124568999999999999999733110 11234444444443 11122
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHHHhhccCcchhhHHHHHHHHhhhhccccccCCCccCCCCHHHHHHHHHhhhhhc
Q 000103 1593 IANPKRCPCPILNASFLKVLDHMLSIARACHTSKSFSTVRNLLLELSTDCLDVDASYGLTYYDPTITELRKKAANSYFSC 1672 (2224)
Q Consensus 1593 l~~~~~~~Cpv~~a~yL~Vl~~ll~~~~~~~~~~~~~~i~~~l~~l~~~~l~~~~~~~~~~~~p~~~~l~~~aa~~~~~~ 1672 (2224)
. |..+.+.|+. ..+.|++...+ +.+|....
T Consensus 1028 a-------ef~~~k~~l~---------------------------a~~~~Le~~~s----~~D~s~e~------------ 1057 (1417)
T KOG1810|consen 1028 A-------EFLIKKLYLC---------------------------AHLFCLEVDVS----WRDPSLED------------ 1057 (1417)
T ss_pred H-------HHhHHHHHHH---------------------------HHHHHHHHhcc----CCCccHHH------------
Confidence 2 3344444433 22334444432 44555322
Q ss_pred cccccccchhhhhccCcccCCCCCccccCCCCCcchhhhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccc
Q 000103 1673 VFQASEESGEEVLQMPQRCSPVDSTLSKIPDMENTFSGLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSS 1752 (2224)
Q Consensus 1673 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~ 1752 (2224)
++++||.. ..++. +.....+.+.+-|-....|+||.++.-++-.. |+.
T Consensus 1058 ------------~q~lqR~~-------~v~e~-~~~~~~~~r~l~~~~~~~~~vr~e~~vy~~~~-----------~l~- 1105 (1417)
T KOG1810|consen 1058 ------------LQLLQRMK-------EVAEA-CHQLVDNFRELPCAQEFDKTVRLERSVYLDVE-----------DLG- 1105 (1417)
T ss_pred ------------HHHHhchH-------HHHHH-hhhhhhhhhhcchHHHHHHHHHhhhhhhhHHH-----------Hhh-
Confidence 11111110 00000 01112222333445567889998883332221 110
Q ss_pred cchhhhhhh-hhhhhHHHHHHHhhhcCCcchHHHHHhHHhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhh
Q 000103 1753 YEIKSIQNW-TKNNLQATLMSRLELEKNPRCTNYVLRLLFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSY 1831 (2224)
Q Consensus 1753 ~~~~~~~~~-~~~~l~~~~~~~l~~E~~~~C~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~ 1831 (2224)
..-| .....|-.++..+..+.+ | ++..+.+..+-+.+.-...+..+..|.++++++
T Consensus 1106 -----~~~s~~f~~aqL~lL~~l~~s~~-------------~-----k~s~n~~~l~~~~i~~~~~~~~~~~~~~~~sl~ 1162 (1417)
T KOG1810|consen 1106 -----FLISAEFLEAQLILLALLDGSFP-------------W-----KESENNEVLSEIDIYAESRDLTLPRTALALSLL 1162 (1417)
T ss_pred -----hhhhhHHHHHHHHHHHHHccccc-------------c-----ccccchHHHHHHHHhccCccchHHHHHHHHHHH
Confidence 0112 222234444444444322 2 122333444444445555678899999999999
Q ss_pred hhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 000103 1832 ELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKKTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKA 1911 (2224)
Q Consensus 1832 ~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~A 1911 (2224)
+...+. .+ .++.|.+.+..... -+++.. .-+..|+.+|...=-++-+++|+--.+.+
T Consensus 1163 er~~~~---~s---L~~tcs~~l~~~~~----------ikesk~-------scvs~~l~~~~sq~~~q~~leq~~la~~~ 1219 (1417)
T KOG1810|consen 1163 ERELNG---QS---LYATCSSVLHMMHS----------IKESKN-------SCVSSCLIKLKSQTFEQDNLEQNQLAQRC 1219 (1417)
T ss_pred HHHhcC---Cc---eeeehHHHHHHHHh----------hhhHHH-------HHHHHHHHHHHhhhHhhhchhhHHHHHHH
Confidence 854333 22 22666665554221 112222 11345667776666666688999999999
Q ss_pred HHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhhhhc
Q 000103 1912 ATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQEAGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKCFSL 1991 (2224)
Q Consensus 1912 aa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~~~ 1991 (2224)
+++.+.+- .++. .+ .+|+.- +..+|++| .+|+|||+.||..++ +.
T Consensus 1220 ~~d~i~~~----~~~~-----------------~~--~~a~~~-s~~~lely----~~L~Dede~IR~~~~-----~~-- 1264 (1417)
T KOG1810|consen 1220 SEDHITHQ----EAGL-----------------AY--GLAEKI-SSKMLELY----HFLPDEDEEIRSKAP-----FG-- 1264 (1417)
T ss_pred HHhhhHHH----Hhhh-----------------hh--hhHHHH-HHHHHHHH----HhccCchHHHHhcCc-----cc--
Confidence 99986653 1111 00 023333 67889999 999999999999998 11
Q ss_pred cccCCCCCCccchhhHHHHHHHHHHHHHhcCchhhHHHHHHHHhccCCccccCCCeeeeeccccccchhhhHHHHHHHHH
Q 000103 1992 RRFGSSSHGVPNQVEKVIELSFEHLSSIFGCWIEYFDYLCQWVLVAASHVVSGGDLVRRVFDKEIDNHHEEKLLISQICC 2071 (2224)
Q Consensus 1992 ~~~~~~~~~vp~q~~~vle~~f~~l~~~f~~~~~y~~~l~~~~~~~~~~~~~~~d~vr~lFdkE~dN~~~E~Ll~~Q~~~ 2071 (2224)
.++ ..+|.|..+++ +++.|++.+++||.++ +++....+-...+ |++|+++.|| .|.|
T Consensus 1265 --~t~--~~l~tq~~~v~-~~rnh~~~~l~~~~e~-------~f~~~~~~~~~~~--l~~~~l~~~~--------~~~C- 1321 (1417)
T KOG1810|consen 1265 --QTK--VYLRTQAWEVC-LARNHLRFILTHDFED-------VFNDIGLVEDFCG--LVLFLLHNDA--------QLFC- 1321 (1417)
T ss_pred --cch--hHHHHHHHHHH-HHHHHHHHHhccccce-------eecccccccCccc--ceeehhcCcH--------HHHH-
Confidence 111 56778999999 9999999999999877 5665553322222 9999999999 6666
Q ss_pred HhhhccccchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccCCccchHHHHHHHHHHHHhhhh
Q 000103 2072 CQLEKIPILKSWVADSLNKDHARNYILGWRQRFSHQLMSFAKDHGRKYEGVDWIGGVGNHKDAFLPLYANLLGFYALSIC 2151 (2224)
Q Consensus 2072 ~~l~k~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~l~~~~~~~~~~~~~~~w~gg~~~~~d~F~~~~~~llg~~~l~~~ 2151 (2224)
.++++.+..+. +.+| .|.+++.+..-. .+|||+|.|+|.++|+.+ ..+
T Consensus 1322 ~f~~~~~n~~~---------------------~~~Q---ka~~~l~~~~~~------~~~kd~~~~l~~~ll~~~--~d~ 1369 (1417)
T KOG1810|consen 1322 LFLQERPNLGQ---------------------SQEQ---KAMDPLIKPSAL------PFLKDMIGKLTFALLNMF--EDD 1369 (1417)
T ss_pred HHHHhcccccc---------------------cHHH---HHHhhhhccccc------hHHHHHHHHhHHHHHHHH--Hhh
Confidence 88888876632 1122 566666666433 899999999999999999 555
Q ss_pred h-ccccccccchhhHHHhhh
Q 000103 2152 I-FKVEAEDGMHLLSDVVEL 2170 (2224)
Q Consensus 2152 ~-~~~~~~d~~~~~~~i~~~ 2170 (2224)
+ +.-+-+|.+.++++|.++
T Consensus 1370 ~~~p~~~~d~~~lf~~i~~l 1389 (1417)
T KOG1810|consen 1370 IDEPLGTADAMELFSKIENL 1389 (1417)
T ss_pred hcCCCCCccchHHHHHHHHH
Confidence 5 245566889999999665
No 2
>COG5543 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.6e-91 Score=848.67 Aligned_cols=919 Identities=18% Similarity=0.178 Sum_probs=705.5
Q ss_pred HHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhhcccCCCchhchHHHHHHHHHHhCCCccccccccHHHHHhhhChhhHh
Q 000103 433 LRIIWNNLEDPLSQTVKQVHLVFDLFLDIESSLRWDVGSERIKSFLQKIASDLLCLGPRCKGRYVPLALLTKRLGAKTLL 512 (2224)
Q Consensus 433 L~~Iw~nWE~Pl~~~~~Q~~~iF~~LL~I~~~~~~~~~~~~~~~Fl~~i~~~LL~l~w~~KgKY~~L~~Lv~~lGa~~iL 512 (2224)
.+++-..|-+-..++-.-.+..|.++|++.-.... .+.-++|+-++-..+|.++.|-|.-|.....|+..-||.++.
T Consensus 107 ~e~v~~f~~~g~~~~~~A~~d~fskll~l~l~~cP---~e~vkD~L~n~mnh~L~~~s~a~v~~~li~~L~~~~~a~~~~ 183 (1400)
T COG5543 107 GEEVRDFGHLGRYKEEEAKTDFFSKLLELQLGRCP---KEAVKDVLFNWMNHLLLLLSGADVASQLIIFLMFYKLAVKYK 183 (1400)
T ss_pred hhHHHhccCcccchHHHHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhhcceeEe
Confidence 34555567777778888889999999998743222 345679999999999999999999999999999999999999
Q ss_pred hcCccHHHHHHHHcccCCccccHHHHHHHHHHHHHhhhhccCCCCcchhhHHhcchhHHHHHhhcCchhHHHhhHhhhhh
Q 000103 513 GMSPDLLSEIVNAYIDDDVCSAATSFLKCFLECLRDECWSSNGISRGYAVYRGHCLPPFLYGLASGVSKLRSNLNTYALP 592 (2224)
Q Consensus 513 ~l~p~ll~ell~aM~d~~v~~aA~~lL~~l~~~L~~e~~~~~~~~~~~~~W~~~Wv~PLl~~L~s~~~~l~~~I~~Y~LP 592 (2224)
..+|+|+.+.+.-|.+..++.+.++.+.+.+-.-.+.-.+ ....-...|-..|-|-.+.-. .+......+..|+.|
T Consensus 184 ~~~p~f~~~s~~ll~~~~la~aV~ktIi~~llnr~~~~f~--e~e~~e~~wmnlwcp~~L~Y~--~Dkq~~~~~s~~~v~ 259 (1400)
T COG5543 184 VYDPRFLHKSKTLLHLIHLARAVLKTIIAYLLNRVDLVFN--EFEGEEVMWMNLWCPKDLKYI--HDKQPADPDSIRAVK 259 (1400)
T ss_pred eeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcchHHHHHHHHhhhhhhhhc--cccCCCCCcchhhhH
Confidence 9999999999999999999999999888877643222111 112235677788888777433 334456789999999
Q ss_pred hhhccCcCc-HHHHHHhhccCCcccccCCCCCCCcCcchhhhhhhHHHHHHHHHHHHHhcccccCcccccccccccccCC
Q 000103 593 VLLDMDVDS-IFPMLAFVSVVPSEEENGLSYPELDCSSFELKVEQQVAVFVSLLKVSRSLALAEGDIDLWKNSSVLRTGS 671 (2224)
Q Consensus 593 ~LfK~dp~s-l~~mL~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~LlAlLkvAR~lgLve~~~~~~~~~~~~~~~~ 671 (2224)
+||+..|.+ |.+.++.+.. .+.+..+++..||+|+..|++++..-
T Consensus 260 ~Lf~~mp~~~F~~~l~~~~n----------------------kD~r~~~~L~~lki~~~~~i~~el~~------------ 305 (1400)
T COG5543 260 RLFSSMPKASFRYSLRILKN----------------------KDERFFVYLPDLKISTGYSILRELLG------------ 305 (1400)
T ss_pred HHhccCChHHHHHHHHhccC----------------------CChhhhhhhhHhhhccchhhhhhhhc------------
Confidence 999999974 4444555531 25668889999999999999986642
Q ss_pred cccccccccchhhhhccccccccHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhcccccCCCCHHHH
Q 000103 672 KFVTEGSNLYALVCIKGISFKVLVDWLVLALTHADELLRVDAAESLFLNPKTASLPSHLELTLMKEAVPLNMRSCSTAFQ 751 (2224)
Q Consensus 672 ~~~~~~~~~~~~~~i~~~~~~v~~e~L~~aL~H~d~~VRi~ALeLL~~SpKtT~ppS~~EL~LIk~fL~~nl~~~s~~~R 751 (2224)
+...+..+...-|.+.++.+..|++|+.++|.++|.+...++-++..+...++...++.|
T Consensus 306 --------------------~~~~~~v~si~K~~~~~~kL~~f~~l~l~~k~s~P~rff~f~~ve~~ie~~f~i~~~~~r 365 (1400)
T COG5543 306 --------------------KLSPDRVRSIIKIVGDEYKLQSFARLFLPLKMSDPQRFFTFRSVEVRIESLFHIDGVGLR 365 (1400)
T ss_pred --------------------ccChHHHHHHHhccchHHHHHHHHHHhcccccCCCccchhhhhHHhhhheeeecCChHHH
Confidence 224456788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcccccCCchhhH--HHHHHHHHHHHHHHHHHhhcccCCCCcchh
Q 000103 752 MKWTSLFRKFFSRVRTALERQFKQGSWRPVVSCENSDRTLINGTDTVI--SKAENLFKFMRWLSCFLFFSCYPSAPYKRK 829 (2224)
Q Consensus 752 q~~~SllKkfl~RlR~s~~r~~k~~~~~~~~~~~ek~~~~~~~~e~~~--~~le~~~~Fl~WL~~fL~~sL~PgAsYqRk 829 (2224)
+.+++.+++||+|.|+++....|.-. ++|.|+.. ..+++...|+.|++++++-.|+||..|||.
T Consensus 366 ~~fl~smq~Ffir~R~~~~slaR~~R--------------k~~~eq~~l~~~veea~~flt~~~~vik~~L~pt~~yq~v 431 (1400)
T COG5543 366 RRFLESMQHFFIRSRSMLKSLARYFR--------------KFPDEQLWLKEKVEEAHKFLTMYLEVIKPMLRPTNAYQRV 431 (1400)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH--------------hCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchHHHH
Confidence 99999999999999999865443221 12333332 457888999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcccccccccccccCcc-CCCCcchHHHHHhhhcCcHHHHHHHHHHHHHhCCCCCCCCCC
Q 000103 830 IMAMELILTMMNIWSIAPPQEKLDSVSLESSLYPYNK-GITAPNSTLLLVGSIIDSWDRLRESSFRILLHFPSPLPGISS 908 (2224)
Q Consensus 830 i~ALklL~~Lle~fg~d~~~~k~~~~~~~~~~~pf~~-~i~~~~~~~lLld~L~DsyddVRe~A~~LL~~fPs~l~g~~s 908 (2224)
..+|.++.+++.. |+|+....+. ...++..|||+. -+++.+..++++|.|.|+|+|||+++.+||..+-+ ++++-+
T Consensus 432 l~Sl~lmd~LI~~-GiD~s~~qk~-l~q~k~efPfs~~~l~D~d~~rlmID~L~~~Y~DIr~ls~kiLl~~~s-~~~~~~ 508 (1400)
T COG5543 432 LGSLYLMDSLIAE-GIDKSTPQKF-LIQNKREFPFSAQLLFDSDHERLMIDLLVSNYADIRKLSTKILLGLES-MSESRG 508 (1400)
T ss_pred HHHHHHHHHHHHh-cccccChhhH-HHhhhccCCCceeeeecccHHHHHHHHhhccHHHHHHHHHHHHHhHhh-cccccc
Confidence 9999999999977 9877433211 112457899999 57788999999999999999999999999987543 344333
Q ss_pred HHHHHHHHHHHHHhcCCCCcccchHHH--HHHHHHHHhhhccccceecccccccccCCCCcccccccccccCcccHHHHH
Q 000103 909 EDMVQKVITWSKKLVCSPRVRESDAGA--LALRLIFRKYVLDLGWIVRASVNVVCLHPQPQQLKGVGQICKSSAPVVEYI 986 (2224)
Q Consensus 909 ~e~l~~Ll~~Al~Ll~S~R~~esDaGA--~ll~LLf~kyv~~lg~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I 986 (2224)
.-.-.-.....+..++|-|.++++||| ..+...|-+- .....++...
T Consensus 509 ~~~~~~~~N~~~~~~~s~~Sh~~~G~A~a~~~c~~f~~~-------------------------------~~~rsfv~~t 557 (1400)
T COG5543 509 LFLDTLDANALKVKIESHQSHDVHGDAGATVYCVEFIKS-------------------------------CQSRSFVGHT 557 (1400)
T ss_pred hhHHHHhhhhHHHHHHHHhhhhccCCCCceEEEeeeehh-------------------------------cCchhhHHHH
Confidence 222222334455577888888877755 3344433321 0012345666
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhhccchhHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHHhhhhhhhccC
Q 000103 987 KSLIDWLEVAVKEGERDLSESCENSFVHGILLALRYTFEELDWNSNAVLSGYSEMKCALEKLLELVMRITSLALWVVSAD 1066 (2224)
Q Consensus 987 ~~LL~~Le~~l~~ae~DLl~Aa~~spvHG~L~aLRyil~~l~~~s~~~~~~~~~wr~~l~~Ll~L~~rI~~~~lwvvss~ 1066 (2224)
+.+++.+.+.+..++..+.++.-++|..|+..-+. +|+.. ..+.+.|+ ++.+++.....+ |+...+
T Consensus 558 k~Il~~~~~n~~~~k~s~~E~sI~~~~~~~~l~l~-~fnS~-------eN~qdt~k-I~seli~~~~~~-----W~~i~~ 623 (1400)
T COG5543 558 KSILDSHMKNFVSGKKSMEEISIGPHFAALSLILG-LFNSE-------ENHQDTSK-ILSELIEHDIIT-----WVDIVY 623 (1400)
T ss_pred HHHHHHHHHHHhccchhHHHhccCcchHHHHHHHH-Hhcch-------hccchHHH-HHHHHHHhhHhh-----HHHHHH
Confidence 77788888888889999999988888888877765 45433 12345687 899999988777 777777
Q ss_pred CccCCCcccccccccccccCCCccccCcCCcchhhhhcCCCCcCCCCcccchhhhHhHHHHHHHHHHHHHHHhCCCCCCC
Q 000103 1067 AWCLPEDMDDMIIDDNLLLDVPEEMDEPLRSLEDEEQNSKPAQDVRTSEQVVMVGCWLAMKEVSLLLGTIIRKIPLPINS 1146 (2224)
Q Consensus 1067 ~l~lPed~dd~~dd~~~l~~I~de~~~~~~~~E~~~~d~k~~~~~~~~~Q~ILs~~WRamKEsSlLLgtLi~~~pL~~~~ 1146 (2224)
++|. |. .++ ++++. + .++++.+|+|+++.||+|||+|.|+.+++.+.|+.
T Consensus 624 v~C~--ds----~~g----~Lp~~----------------e-~~~~~P~Qvils~~wR~~KE~ssll~~~l~k~~~T--- 673 (1400)
T COG5543 624 VCCF--DS----LSG----VLPGQ----------------E-DDCGVPDQVILSVYWRNMKECSSLLCGMLLKYPLT--- 673 (1400)
T ss_pred HHhc--Cc----ccc----CCCCc----------------c-ccCCCcceeehHHHHHHHHHHHHHHHHHHhcCCCC---
Confidence 7774 11 111 11111 1 12458899999999999999999999999987653
Q ss_pred CCCCCCCCCCCCCcchhhhhhhccccCCHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHcCCchHHHHhHHH
Q 000103 1147 SSDTVDSGSGTSDAADDLLMTMSDAMLDLKQLEKIGSHFLEVLLKMKHNGAIDKTRAGFTALCNRLLCSNDLRLCRLTES 1226 (2224)
Q Consensus 1147 ~~~~~~~~~~~~~~~~~~~~~~s~~lls~eqi~~IG~~~~~~Ll~~RHRGAfe~v~~~F~~lC~rL~~s~~~~L~~LP~~ 1226 (2224)
..++.-+|++++.||..+||+|||.+|+++|..+|.|| +-+++.+|..
T Consensus 674 ----------------------------~~~l~~~g~L~~v~L~~IrH~Gaf~~V~p~l~~~c~~C----~~ef~e~~~~ 721 (1400)
T COG5543 674 ----------------------------RGNLALSGRLVQVLLSHIRHLGAFLQVSPYLNMVCKRC----NMEFEEDELL 721 (1400)
T ss_pred ----------------------------CchHHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHh----cccCcccchH
Confidence 35788999999999999999999999999999999888 3457888999
Q ss_pred HHHHHHHHHhhccccchhhhhccCChhHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhhhhhhhhhhcccccccccccCC
Q 000103 1227 WMEQLMERTVAKGQIVDDLLRRSAGIPAAFIALFLAEPEGAPKKLLPQALRWLIDVANRSLLDLIENKGAKTTMCEFSHS 1306 (2224)
Q Consensus 1227 WL~~lL~~i~~~~qsv~~lTRRSAGLP~li~aIL~aEp~~~~~~LL~~~m~~Ll~iA~~~~~~~~d~~~~~~~~~~~~~~ 1306 (2224)
||.+....+..+.+. +||||||||++|++||.||.. +.++++.+++++|+++|+.|...++
T Consensus 722 ~L~k~~~~~~ek~~~---ItRRSGGiPll~tsIL~A~~~-K~~~Lle~t~~~Ll~~a~~p~~~~~--------------- 782 (1400)
T COG5543 722 ELVKVSFNRIEKCKA---ITRRSGGIPLLFTSILRAEVT-KYPSLLERTLKRLLELAETPESSHQ--------------- 782 (1400)
T ss_pred HHHHHHHHHHHHhhH---HHhcCCCcchhHHHHHHhccc-ccchHHHHHHHHHHHHHhCCCCccc---------------
Confidence 999999877666554 799999999999999999987 4689999999999999998865432
Q ss_pred ccccccCCCCCccccccCccccCCCCcchHHHHHHHHHHHcCCCcchhhHHhHHHHHHHHHhccCCCchhhhchHHHHHH
Q 000103 1307 NQETESAVPPDIYATWNSSKIRDEGVVPTVHAFNILRAAFNDTNLAADTSAFSAEALIISIRSFSSPYWEIRNSACLAYT 1386 (2224)
Q Consensus 1307 ~~~~~s~~~~~~~~~e~~s~~~de~~lPqVHALNiLRaIF~Ds~Ls~~~~~Yi~~aL~lAi~~F~S~~WaIRNsAlMLFs 1386 (2224)
++-++|||||||||+.||.+..|+.++..|+++|+.+|++||++..|+||||+.|||+
T Consensus 783 ----------------------~eFDLpqVha~N~l~~If~e~~Lss~~~~~ieea~~La~~~f~~~lWaiRNcsImLFT 840 (1400)
T COG5543 783 ----------------------DEFDLPQVHALNILSRIFEEGCLSSKLPLQIEEAFGLAFKCFRSNLWAIRNCSIMLFT 840 (1400)
T ss_pred ----------------------ccccchhhHHHHHHHHHHhccccccccHHHHHHHHHHHHhccccceeeecccchHHHH
Confidence 4556999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCchhhhhhccchhhhhhcCCChHHHHHHHHHHHHhhhcCCCCCCcccccccccccchHHHHHHHhccC
Q 000103 1387 ALIRRMLGFLNVQKRESARRALTGLEFFHRYPSLHPFIFNELRVITELLGNASSGQSASNLANVVHPSLCPMLILLCRLK 1466 (2224)
Q Consensus 1387 ALi~RifG~~~~~~~~s~r~~~t~~eFF~RYP~L~~fLl~~L~~a~~~l~~~~s~~~es~~a~~~~psLfPiL~LLSRL~ 1466 (2224)
+|++|+||.++.+. .+..+..+...||++||+|++.|++.|..+..++... .-+|.. . .++|.++..|-|++
T Consensus 841 ~LvnRaFg~~~~~~-vg~~~~~s~klff~k~s~lrd~ll~~L~~sIa~lsg~---~r~s~g---~-e~I~~v~~~l~rl~ 912 (1400)
T COG5543 841 NLVNRAFGRGPEGI-VGMAHAGSRKLFFKKLSLLRDKLLDVLALSIAHLSGR---MRESNG---E-ESIFLVTEALWRLS 912 (1400)
T ss_pred HHHHHHhCCCCCcc-cccchhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcC---cCcccc---c-chHHHHHHHHHHhC
Confidence 99999999765442 1112244445799999999999999999988766321 111111 1 15555566666677
Q ss_pred CCCCCCCCCCCCCccccHHHHHHHhCCCChHHHHHHHHHhhccCCCCChHHHHHHHHHHhhhhcccCCcCccccccCCCC
Q 000103 1467 PSALAGESGDDLDPFLFMPFIRRCSTQSNLKVRVLASRALTGLVPNEKLPDVLLNIASELLCVEGQNEAAPVSSLRGTHR 1546 (2224)
Q Consensus 1467 Ps~~~~~~~d~L~~~~F~p~I~rcl~s~~~~VRelAARALasLv~~~~i~~~i~~Ll~~L~~~~~~~~~~~~~~~~~~~~ 1546 (2224)
|..... +| ..|-|.+.+|.++|+|++|++|++.|.+++...+..-.+.-.+... .
T Consensus 913 p~gg~t----GL--k~fn~~~~kc~~~~~~K~r~~as~vl~~ll~~~e~~~rvl~~L~s~-------------------a 967 (1400)
T COG5543 913 PRGGVT----GL--KSFNICTKKCWKMPNWKARPRASMVLNPLLSEGEVLLRVLILLDSE-------------------A 967 (1400)
T ss_pred ccCCcc----cc--cccccHHHHHhcCcccccchhHHhhhhhhhcccHHHHHHHHHhhHH-------------------H
Confidence 765432 23 5799999999999999999999999999999888655555555543 2
Q ss_pred CChhHhHHHHHHHHHHHHhhccccCcchhhhhhHHHHHHHHhhhccccCCCCCCcHHHHHHHHHHHHHHHHH
Q 000103 1547 ASFNLIHGILLQLGSLLDANCRNLVDFSKKDQILGDLIKVLGNCSWIANPKRCPCPILNASFLKVLDHMLSI 1618 (2224)
Q Consensus 1547 ~s~N~lHG~LLqi~~LL~~~~~~~~d~~~~~~~~~~l~~~l~~~~wl~~~~~~~Cpv~~a~yL~Vl~~ll~~ 1618 (2224)
..||.+||.||.+++++..+...--+ -+.+..+.++. -...++ .+-|.++.++|+..-..++..
T Consensus 968 ~~qn~~hg~lL~~~~~ls~y~s~~l~----~~~Vqri~ei~-~~~~~~---~~l~f~s~k~~~~l~c~fle~ 1031 (1400)
T COG5543 968 VEQNGMHGSLLENVYGLSSYSSEYLK----HYTVQRICEIG-YQEAAA---QRLRFYSLKIERSLSCFFLES 1031 (1400)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHhhhC
Confidence 57999999999999999987542211 11222222211 113333 245888888888776666543
No 3
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=100.00 E-value=2.5e-51 Score=480.19 Aligned_cols=253 Identities=40% Similarity=0.687 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcc--CCccCCCcccccccccccccCCCccccCcCCcchhhhhcCCCCcCCCCcccch
Q 000103 1041 MKCALEKLLELVMRITSLALWVVSA--DAWCLPEDMDDMIIDDNLLLDVPEEMDEPLRSLEDEEQNSKPAQDVRTSEQVV 1118 (2224)
Q Consensus 1041 wr~~l~~Ll~L~~rI~~~~lwvvss--~~l~lPed~dd~~dd~~~l~~I~de~~~~~~~~E~~~~d~k~~~~~~~~~Q~I 1118 (2224)
|+.++++++++|++|++++++|++. |++++|++.++..+ ..+..++..+++|+|
T Consensus 1 W~~~~~~ll~l~~~i~~~~~~vl~~~speg~~~~~~~~~~~------------------------~~~~~~~~~~~~q~i 56 (255)
T PF10350_consen 1 WRSILNRLLSLCFRIWEFVLPVLCNDSPEGHLPEDEEDEED------------------------NDEDEEDSSPSSQLI 56 (255)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCcCcCCccchhhhcc------------------------ccchhhhcCCcchHH
Confidence 8999999999999999999999986 55666544311100 011112344889999
Q ss_pred hhhHhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCcchhhhhhhccccCCHHHHHHHHHHHHHHHHhccccchh
Q 000103 1119 MVGCWLAMKEVSLLLGTIIRKIPLPINSSSDTVDSGSGTSDAADDLLMTMSDAMLDLKQLEKIGSHFLEVLLKMKHNGAI 1198 (2224)
Q Consensus 1119 Ls~~WRamKEsSlLLgtLi~~~pL~~~~~~~~~~~~~~~~~~~~~~~~~~s~~lls~eqi~~IG~~~~~~Ll~~RHRGAf 1198 (2224)
++||||+|||+|+||++|++++|++... ....++.+++++||++|++||++|||||||
T Consensus 57 l~~~Wr~iKE~s~Ll~~l~~~~~~~~~~----------------------~~~~ls~~~i~~ig~~l~~~L~~~rHrGAf 114 (255)
T PF10350_consen 57 LSCCWRSIKESSLLLGTLVEKIPLPPDS----------------------SNSLLSPDQIEKIGELLIEQLLEIRHRGAF 114 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCcc----------------------cccCCCHHHHHHHHHHHHHHHHhcccccHH
Confidence 9999999999999999999999876411 245789999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHHHhhccccchhhhhccCChhHHHHHHHhcCCCCCCCCcHHHHHHH
Q 000103 1199 DKTRAGFTALCNRLLCSNDLRLCRLTESWMEQLMERTVAKGQIVDDLLRRSAGIPAAFIALFLAEPEGAPKKLLPQALRW 1278 (2224)
Q Consensus 1199 e~v~~~F~~lC~rL~~s~~~~L~~LP~~WL~~lL~~i~~~~qsv~~lTRRSAGLP~li~aIL~aEp~~~~~~LL~~~m~~ 1278 (2224)
+++|+||.++|++|++++++++++||+.||+++|+.|..++++..++|||||||||+|++||.+||++.+ ++|+++|++
T Consensus 115 e~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~-~ll~~~~~~ 193 (255)
T PF10350_consen 115 ESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSR-PLLHRTMKS 193 (255)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcch-hHHHHHHHH
Confidence 9999999999999999999999999999999999999887555567899999999999999999999765 999999999
Q ss_pred HHHHHhhhhhhhhhhcccccccccccCCccccccCCCCCccccccCccccCCCCcchHHHHHHHHHHHcCCCcchhhHHh
Q 000103 1279 LIDVANRSLLDLIENKGAKTTMCEFSHSNQETESAVPPDIYATWNSSKIRDEGVVPTVHAFNILRAAFNDTNLAADTSAF 1358 (2224)
Q Consensus 1279 Ll~iA~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~~~~~~~~~e~~s~~~de~~lPqVHALNiLRaIF~Ds~Ls~~~~~Y 1358 (2224)
|+++|+.+..... .+..++||||||||||+||+|++|++++.+|
T Consensus 194 Ll~ia~~~~~~~~------------------------------------~~~~d~~qVHAlNiLr~if~ds~L~~~~~~y 237 (255)
T PF10350_consen 194 LLEIAKSPSTQHE------------------------------------DEKSDLPQVHALNILRAIFRDSKLSEDVSPY 237 (255)
T ss_pred HHHHhcCCccccc------------------------------------ccccchHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 9999998743210 0122589999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchh
Q 000103 1359 SAEALIISIRSFSSPYWE 1376 (2224)
Q Consensus 1359 i~~aL~lAi~~F~S~~Wa 1376 (2224)
+++++++|+++|+||+|+
T Consensus 238 i~~~l~lai~~f~s~~Wa 255 (255)
T PF10350_consen 238 IEDALILAIKGFSSPDWA 255 (255)
T ss_pred HHHHHHHHHHhCCCccCC
Confidence 999999999999999996
No 4
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=4.8e-07 Score=120.27 Aligned_cols=355 Identities=17% Similarity=0.088 Sum_probs=190.4
Q ss_pred CCccccHHHHHHHhCCCChHHHHHHHHHhhccCCCCChHHHHHHHHHHhhhhcccCCcCccccccCCCCCChhHhHHHHH
Q 000103 1478 LDPFLFMPFIRRCSTQSNLKVRVLASRALTGLVPNEKLPDVLLNIASELLCVEGQNEAAPVSSLRGTHRASFNLIHGILL 1557 (2224)
Q Consensus 1478 L~~~~F~p~I~rcl~s~~~~VRelAARALasLv~~~~i~~~i~~Ll~~L~~~~~~~~~~~~~~~~~~~~~s~N~lHG~LL 1557 (2224)
.+...+.+...+|++.+.++-|.+.+++.+++.--..+...+.+++.+++ +..+.....|++||+|+
T Consensus 512 ~~l~ts~rs~~~~g~a~~i~~~~~~t~~~~p~~~i~~~~~~l~~~~s~~q-------------~dl~~~~k~n~ihg~ll 578 (1417)
T KOG1810|consen 512 KDLATSVRSRERDGHAPRIQSRNTFTRAGVPFSLIDHLIQWLNQLLSELQ-------------SDLTECAKNNHIHGTLL 578 (1417)
T ss_pred HHhccchhhHHhcCCCceeEEeeeccCCCCceeHHHHHHHHHHHHHHhhh-------------hhHHHHhhccccccHHH
Confidence 35567889999999999999999999999888555555566666666543 11134567899999999
Q ss_pred HHHHHHHhhccccCcchhhhhhHHHHHHH---HhhhccccCCCCCCcH-HHHHHHHHHHHHHHHHHHhhcc-Cc------
Q 000103 1558 QLGSLLDANCRNLVDFSKKDQILGDLIKV---LGNCSWIANPKRCPCP-ILNASFLKVLDHMLSIARACHT-SK------ 1626 (2224)
Q Consensus 1558 qi~~LL~~~~~~~~d~~~~~~~~~~l~~~---l~~~~wl~~~~~~~Cp-v~~a~yL~Vl~~ll~~~~~~~~-~~------ 1626 (2224)
+++++++.+.-+.. ...+....+++.. ++...|.... .++|- ...+-|-|.....++...+... +.
T Consensus 579 a~~~Ll~~~~~~s~--~~~~~~~~eiid~lv~~~lklw~~v~-~vvc~dSpeg~lpD~~~~~~~~~~ts~~~~~~~Qlil 655 (1417)
T KOG1810|consen 579 AVRHLLQNYKWKSL--ENNQDFWEEIIDELVCTCLKLWLAVR-PVVCLDSPEGNLPDILALLTCCGNTSALVDTPPQLIL 655 (1417)
T ss_pred HHHHHHHhcchhhh--ccccHHHHHHHHHHHHHHHHHHHHhc-cccccCCccccCchHHHhhccccccccccCCchhhhh
Confidence 99999987432221 1112222333332 2344788754 35665 2222333333332211000000 00
Q ss_pred -----chhhHHHHHHHHhhhhccccccCCCccCCCCHHHHHHHHHhhhhhccccccccchhhhhccCcccCCCCCccccC
Q 000103 1627 -----SFSTVRNLLLELSTDCLDVDASYGLTYYDPTITELRKKAANSYFSCVFQASEESGEEVLQMPQRCSPVDSTLSKI 1701 (2224)
Q Consensus 1627 -----~~~~i~~~l~~l~~~~l~~~~~~~~~~~~p~~~~l~~~aa~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1701 (2224)
..+.+...+..+.+-|.. -...+|+. ..|+|+-++.. ...++.+ +--+
T Consensus 656 l~~Wra~Kevs~ll~~Ii~k~~~------~~~lt~~q--------Le~IG~lfl~~------LaeikHr--GAfe----- 708 (1417)
T KOG1810|consen 656 LGAWRAVKEVSSLLETIIGKPQQ------DALLTPAQ--------LEYIGSLFLLQ------LAEIKHR--GAFE----- 708 (1417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc------ccccCHHH--------HHHHHHHHHHH------HHHHHhc--cchh-----
Confidence 011111112222222100 01123332 23333333311 1111110 0000
Q ss_pred CCCCcchhhhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcc
Q 000103 1702 PDMENTFSGLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPR 1781 (2224)
Q Consensus 1702 ~~~~~~~~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~ 1781 (2224)
.+.-.|..+=. +..|.++...|++...|+.+++.+++..++ .-+++.+ +. ....++-.+-.+.-+++.+|+
T Consensus 709 -~~~~gf~~lC~-f~~s~~~~~~~lp~~wLee~l~~i~~kt~~---itRRSaG---lP-~ll~al~~te~~~~~k~ll~r 779 (1417)
T KOG1810|consen 709 -SARPGFTALCS-FLQSNESRFPELPELWLEELLEKILAKTSG---ITRRSAG---LP-FLLTALVETELKLGMKELLPR 779 (1417)
T ss_pred -hccccHHHHHH-HHHhcccccccCcHHHHHHHHHHHHhhccc---chhccCC---CC-HHHHHHHHhhhcccchhhhHH
Confidence 01235566655 777888999999999999999998877765 2233333 22 244566677777777899999
Q ss_pred hHHHHHhHHhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhh
Q 000103 1782 CTNYVLRLLFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSS 1861 (2224)
Q Consensus 1782 C~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~ 1861 (2224)
|+++.++|..+.... .+...++- .++-- +....+| ..+..++.+.+ ...-|+ |++..--++
T Consensus 780 ~~~~Ll~ia~~p~~~--~~~~~~~p--~VHA~----NvmkaIf--~~~~LS~~~se------f~s~Al---~lAi~~fs~ 840 (1417)
T KOG1810|consen 780 CFCKLLKIAECPLPG--EWGEGDEP--RVHAM----NVMKAIF--TSSILSNERSE------FQSRAL---RLAIEGFSH 840 (1417)
T ss_pred HHHHHHHHhcCCCcc--ccCCCcch--hhhhH----HHHHHHH--ccchhhHHHHH------HHHHHH---HHHHHhcCc
Confidence 999999999876652 12222221 11111 3455666 45555555555 333333 444322222
Q ss_pred hhhhhhhhhccccccccccccchHHHHHHHHHHHHHhh--cCCCCChHHHHHHHHH
Q 000103 1862 ILVDARKKTIEISESDHLGRSAHLFACITAFVNIINRH--SSSSEPVNMRKAATGS 1915 (2224)
Q Consensus 1862 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~--s~~~~p~~~R~Aaa~a 1915 (2224)
+. - ..-|...-|+..+.+|+--|... +.+.++...+++--+-
T Consensus 841 ---~~-----W----~~RN~atlLfaALi~RvfGv~~s~~~~~~r~~~S~~~FFtk 884 (1417)
T KOG1810|consen 841 ---DM-----W----AERNSATLLFAALINRVFGVIRSRLCLDHRNRLSGLEFFTK 884 (1417)
T ss_pred ---hH-----H----hhhhhHHHHHHHHHHHHHHhhhHHhhcccccccchhhhhhc
Confidence 11 0 01133444677888888887776 7777777666655443
No 5
>PRK09687 putative lyase; Provisional
Probab=91.31 E-value=3.6 Score=50.56 Aligned_cols=92 Identities=18% Similarity=0.116 Sum_probs=61.2
Q ss_pred HHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHhcc
Q 000103 1714 RLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLFTW 1793 (2224)
Q Consensus 1714 ~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~~~ 1793 (2224)
.|...|.|..++||..+.+.|-+. .+. . .-..+.+ +...+++..+..+.++|...
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~-~~~--------------~---------~~~~l~~-ll~~~d~~vR~~A~~aLg~l 81 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLR-GGQ--------------D---------VFRLAIE-LCSSKNPIERDIGADILSQL 81 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-Ccc--------------h---------HHHHHHH-HHhCCCHHHHHHHHHHHHhc
Confidence 467788999999999999998766 100 1 1112333 45666788777777777665
Q ss_pred chhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHH
Q 000103 1794 NLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAIC 1850 (2224)
Q Consensus 1794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~ 1850 (2224)
... ... -......|..++..+..+.+|..++..+|..
T Consensus 82 g~~--------~~~------------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 82 GMA--------KRC------------QDNVFNILNNLALEDKSACVRASAINATGHR 118 (280)
T ss_pred CCC--------ccc------------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 431 110 1233455677778888899999999999984
No 6
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.94 E-value=0.27 Score=40.43 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=24.3
Q ss_pred cHHHHHHHhCCCChHHHHHHHHHhhccC
Q 000103 1483 FMPFIRRCSTQSNLKVRVLASRALTGLV 1510 (2224)
Q Consensus 1483 F~p~I~rcl~s~~~~VRelAARALasLv 1510 (2224)
++|.+.+++++++|.||..|+++|..+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999997764
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=88.11 E-value=80 Score=41.65 Aligned_cols=207 Identities=16% Similarity=0.216 Sum_probs=112.0
Q ss_pred hhhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHh
Q 000103 1709 SGLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLR 1788 (2224)
Q Consensus 1709 ~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~ 1788 (2224)
......|...|+++..++|..+|+.|........+. +. -....+..+..+.++.++.++|.
T Consensus 266 ~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~-------------v~------~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 266 QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA-------------VF------NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH-------------HG------THHHHHHHHHCSSSHHHHHHHHH
T ss_pred HhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh-------------hh------hhhhhhheecCCCChhHHHHHHH
Confidence 445556888899999999999999999886533111 11 12334456667889999999999
Q ss_pred HHhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHH---HHhhhhhhh
Q 000103 1789 LLFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFAN---LFTSSILVD 1865 (2224)
Q Consensus 1789 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~---~~~~~~~~~ 1865 (2224)
+|...--. ...-.+=+.+..-.........|..++..++.|..++.. +.... .++
T Consensus 327 lL~~l~~~---------------------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~-l~~ 384 (526)
T PF01602_consen 327 LLYKLANE---------------------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDT-LLK 384 (526)
T ss_dssp HHHHH--H---------------------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHH-HHH
T ss_pred HHhhcccc---------------------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHH-HHH
Confidence 99854331 111222233444443333445888899999998887653 22222 222
Q ss_pred hhhhhccccccc------c-c--cccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccC
Q 000103 1866 ARKKTIEISESD------H-L--GRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQ 1936 (2224)
Q Consensus 1866 ~~~~~~~~~~~~------~-~--~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~ 1936 (2224)
.+...++..... . + +++.. ...+.+.++.+.. ... .+++.+++-.|-.- ..... +
T Consensus 385 ll~~~~~~~~~~~~~~i~~ll~~~~~~~-~~~l~~L~~~l~~---~~~-~~~~~~~~wilGEy-----~~~~~----~-- 448 (526)
T PF01602_consen 385 LLEISGDYVSNEIINVIRDLLSNNPELR-EKILKKLIELLED---ISS-PEALAAAIWILGEY-----GELIE----N-- 448 (526)
T ss_dssp HHHCTGGGCHCHHHHHHHHHHHHSTTTH-HHHHHHHHHHHTS---SSS-HHHHHHHHHHHHHH-----CHHHT----T--
T ss_pred hhhhccccccchHHHHHHHHhhcChhhh-HHHHHHHHHHHHH---hhH-HHHHHHHHhhhccc-----CCccc----c--
Confidence 222211111100 0 0 11111 1234444444444 222 22455555554442 22100 0
Q ss_pred CCCCCCCCCCCcccccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhhhhc
Q 000103 1937 IPSENSSLHFEPQEAGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKCFSL 1991 (2224)
Q Consensus 1937 ~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~~~ 1991 (2224)
. . .+.+.=..+....-+|+..+|..+=....|.+..
T Consensus 449 ----~-----------~----~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 449 ----T-----------E----SAPDILRSLIENFIEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp ----T-----------T----HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred ----c-----------c----cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhh
Confidence 0 0 2233444566777889999999999999999843
No 8
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.59 E-value=1.9e+02 Score=40.33 Aligned_cols=242 Identities=17% Similarity=0.193 Sum_probs=131.6
Q ss_pred cchHHHHHHHhccCCCCCCCCCCCCCCccccHHHHHHHhCCCChHHHHHHHHHhhccCCCCChHHHHHHHHHHhhhhccc
Q 000103 1453 PSLCPMLILLCRLKPSALAGESGDDLDPFLFMPFIRRCSTQSNLKVRVLASRALTGLVPNEKLPDVLLNIASELLCVEGQ 1532 (2224)
Q Consensus 1453 psLfPiL~LLSRL~Ps~~~~~~~d~L~~~~F~p~I~rcl~s~~~~VRelAARALasLv~~~~i~~~i~~Ll~~L~~~~~~ 1532 (2224)
.-+..+|.-|+++-++.+-- ...|.|.+.+.+++=-||.-|+-|.+-++. +.++.+..++..-.
T Consensus 122 ~vVglAL~alg~i~s~Emar---------dlapeVe~Ll~~~~~~irKKA~Lca~r~ir--K~P~l~e~f~~~~~----- 185 (866)
T KOG1062|consen 122 YVVGLALCALGNICSPEMAR---------DLAPEVERLLQHRDPYIRKKAALCAVRFIR--KVPDLVEHFVIAFR----- 185 (866)
T ss_pred eehHHHHHHhhccCCHHHhH---------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHH--cCchHHHHhhHHHH-----
Confidence 46789999999999887631 378999999999999999999999988874 22233333333211
Q ss_pred CCcCccccccCCCCCChhHhHHHHHHHHHHHHhhccccCcch-hhhhhHHHHHHHHhhhc--ccc---CCCCCCcHHHHH
Q 000103 1533 NEAAPVSSLRGTHRASFNLIHGILLQLGSLLDANCRNLVDFS-KKDQILGDLIKVLGNCS--WIA---NPKRCPCPILNA 1606 (2224)
Q Consensus 1533 ~~~~~~~~~~~~~~~s~N~lHG~LLqi~~LL~~~~~~~~d~~-~~~~~~~~l~~~l~~~~--wl~---~~~~~~Cpv~~a 1606 (2224)
.....++ ||+|+..-+++...|...++.. ......+.++..|++.. -+- +...-+=|+++-
T Consensus 186 ------------~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi 252 (866)
T KOG1062|consen 186 ------------KLLCEKH-HGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI 252 (866)
T ss_pred ------------HHHhhcC-CceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHH
Confidence 0011111 9999999999888776643321 12335666666665431 110 111235577765
Q ss_pred HHHHHHHHHHHHHHhhccCcchh-hHHHHHHHHhhhhccccccCCCccC--CCC------HHHHHHHHHhhhhhcccccc
Q 000103 1607 SFLKVLDHMLSIARACHTSKSFS-TVRNLLLELSTDCLDVDASYGLTYY--DPT------ITELRKKAANSYFSCVFQAS 1677 (2224)
Q Consensus 1607 ~yL~Vl~~ll~~~~~~~~~~~~~-~i~~~l~~l~~~~l~~~~~~~~~~~--~p~------~~~l~~~aa~~~~~~v~~~~ 1677 (2224)
--|++|..| |+...... ...-.|.++++++=.+.+.+..-.| +-+ -+.||..|++ .++-.+.-.
T Consensus 253 ~iLrlLriL------Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrvlain-iLgkFL~n~ 325 (866)
T KOG1062|consen 253 RILRLLRIL------GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAIN-ILGKFLLNR 325 (866)
T ss_pred HHHHHHHHh------cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHH-HHHHHhcCC
Confidence 555555444 44443333 3334577777776444444332222 000 0236666653 333333322
Q ss_pred ccchhhh-hccCcccCCCCCccccCCCCCcchhhhHHHHHhhcCCchhHhHHHHHHHHHHhhh
Q 000103 1678 EESGEEV-LQMPQRCSPVDSTLSKIPDMENTFSGLLERLVRSLSDSSYEVRLSTLKWLLKFLK 1739 (2224)
Q Consensus 1678 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~ 1739 (2224)
+..--.+ .+...+.-..+... ..-+. ..++.||.|+..-+|..||+-++...+
T Consensus 326 d~NirYvaLn~L~r~V~~d~~a-------vqrHr--~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 326 DNNIRYVALNMLLRVVQQDPTA-------VQRHR--STILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred ccceeeeehhhHHhhhcCCcHH-------HHHHH--HHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 2110000 00000000000000 01111 246789999999999999999998865
No 9
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=79.22 E-value=19 Score=51.15 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=21.0
Q ss_pred HHHHHhhcCCchhHhHHHHHHHHHHh
Q 000103 1712 LERLVRSLSDSSYEVRLSTLKWLLKF 1737 (2224)
Q Consensus 1712 ~~~l~~~L~~~~yevR~~tlk~ll~~ 1737 (2224)
.+.|..+|.|+..+||..|.+.|-+.
T Consensus 654 ~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 654 GPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34577788999999999998888665
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=79.13 E-value=1.6e+02 Score=41.69 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=40.1
Q ss_pred hhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 000103 1832 ELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKKTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKA 1911 (2224)
Q Consensus 1832 ~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~A 1911 (2224)
.++.--++||++|.|||..+..|.-.+... |-+++-.+++-+++ +..|.+
T Consensus 579 a~d~DqeVkeraIscmgq~i~~fgD~l~~e-----------------------L~~~L~il~eRl~n-------EiTRl~ 628 (1233)
T KOG1824|consen 579 ATDSDQEVKERAISCMGQIIANFGDFLGNE-----------------------LPRTLPILLERLGN-------EITRLT 628 (1233)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhhh-----------------------hHHHHHHHHHHHhc-------hhHHHH
Confidence 344677899999999999888777533332 34566666666653 457899
Q ss_pred HHHHHHh
Q 000103 1912 ATGSIVA 1918 (2224)
Q Consensus 1912 aa~al~~ 1918 (2224)
|++|+.-
T Consensus 629 AvkAlt~ 635 (1233)
T KOG1824|consen 629 AVKALTL 635 (1233)
T ss_pred HHHHHHH
Confidence 9888754
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.12 E-value=1.9e+02 Score=40.19 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=97.4
Q ss_pred cchHHHHHHHHHHHcCCCcchhhHHhHHH-HHHHHHhccCCCchhhhchHHHHHHHHHHHHhccccCCchhhhhhccchh
Q 000103 1333 VPTVHAFNILRAAFNDTNLAADTSAFSAE-ALIISIRSFSSPYWEIRNSACLAYTALIRRMLGFLNVQKRESARRALTGL 1411 (2224)
Q Consensus 1333 lPqVHALNiLRaIF~Ds~Ls~~~~~Yi~~-aL~lAi~~F~S~~WaIRNsAlMLFsALi~RifG~~~~~~~~s~r~~~t~~ 1411 (2224)
--|+-||-||-.|.. --=+.+.+|+++ .+.+-+.+|.|+.=.|-==++=.+|.+-.-=+-..-.-++...+..-+..
T Consensus 232 ~i~~aa~~ClvkIm~--LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~ 309 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMS--LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSS 309 (859)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Confidence 368999999988763 123578999999 55788889999887776666666665543322100000000000001111
Q ss_pred hhhhc--CCChHHHHHHHHHHHHhhhcCCCCCCcccccccccccchHHHHHHHhccCCCCCCCCCCCCCCccccHHHHHH
Q 000103 1412 EFFHR--YPSLHPFIFNELRVITELLGNASSGQSASNLANVVHPSLCPMLILLCRLKPSALAGESGDDLDPFLFMPFIRR 1489 (2224)
Q Consensus 1412 eFF~R--YP~L~~fLl~~L~~a~~~l~~~~s~~~es~~a~~~~psLfPiL~LLSRL~Ps~~~~~~~d~L~~~~F~p~I~r 1489 (2224)
.+|.| -|.+.|.|++.|.+-.+.-+++ .. .++-.-=--|+++.+..-. +.+. .-+|||..
T Consensus 310 ~~fa~~a~~~v~P~Ll~~L~kqde~~d~D-dW--------np~kAAg~CL~l~A~~~~D-------~Iv~--~Vl~Fiee 371 (859)
T KOG1241|consen 310 KYFARQALQDVVPVLLELLTKQDEDDDDD-DW--------NPAKAAGVCLMLFAQCVGD-------DIVP--HVLPFIEE 371 (859)
T ss_pred hHHHHHHHhHhhHHHHHHHHhCCCCcccc-cC--------cHHHHHHHHHHHHHHHhcc-------cchh--hhHHHHHH
Confidence 34444 3467888888886632111111 01 1111112457778776643 3343 47899999
Q ss_pred HhCCCChHHHHHHHHHhhccCCCCC
Q 000103 1490 CSTQSNLKVRVLASRALTGLVPNEK 1514 (2224)
Q Consensus 1490 cl~s~~~~VRelAARALasLv~~~~ 1514 (2224)
..++|+|+=|++|+-|+-+.+.-.+
T Consensus 372 ~i~~pdwr~reaavmAFGSIl~gp~ 396 (859)
T KOG1241|consen 372 NIQNPDWRNREAAVMAFGSILEGPE 396 (859)
T ss_pred hcCCcchhhhhHHHHHHHhhhcCCc
Confidence 9999999999999999998876444
No 12
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=73.98 E-value=9.4 Score=35.02 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q 000103 1958 QVLVIWFTCIKLLEDEDDGIRQRLAIDVQ 1986 (2224)
Q Consensus 1958 ~~l~~W~~~~~LLeDeD~~iR~~~a~~v~ 1986 (2224)
..-.+.-.++.+|+|+++.||..++.++.
T Consensus 25 ~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 25 YLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 44567788899999999999999987764
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=73.37 E-value=24 Score=50.25 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=38.1
Q ss_pred HHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHhc
Q 000103 1713 ERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLFT 1792 (2224)
Q Consensus 1713 ~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~~ 1792 (2224)
+.|+..|.|+..+||..|.++|-+.-. ....+.|.+.| .++++.-+..++.-|..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~------------------------~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~ 678 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP------------------------PGFGPALVAAL-GDGAAAVRRAAAEGLRE 678 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc------------------------hhHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 467889999999999999999988721 01122333433 67788777777666643
No 14
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.57 E-value=51 Score=46.94 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=124.2
Q ss_pred cCCcchHHHHHhHHhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHH
Q 000103 1777 EKNPRCTNYVLRLLFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFAN 1856 (2224)
Q Consensus 1777 E~~~~C~~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~ 1856 (2224)
|+.-.|..++..++...-.. .+.. =.+.+..+|-.++..+...+--. |+-++|+++-
T Consensus 814 e~d~~ll~~i~~i~~~l~k~-----~k~~----------f~p~f~~~~p~iv~~l~~~~~~~-r~~av~~~~d------- 870 (1075)
T KOG2171|consen 814 EQDAYLLDAISDILAALAKA-----LKGS----------FLPFFENFLPLIVKLLKSKKTVA-RQWAVCIFDD------- 870 (1075)
T ss_pred hhhHHHHHHHHHHHHHHHHH-----cccc----------ccHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHH-------
Confidence 88889999999998865442 1111 12667788888888888776555 9999988887
Q ss_pred HHhhhhhhhhhhhhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccC
Q 000103 1857 LFTSSILVDARKKTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQ 1936 (2224)
Q Consensus 1857 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~ 1936 (2224)
++.+ +.+- -+.....|.-.|-+...++.| |+|+||+..+--. +..
T Consensus 871 -~ie~--------~~~a-----------~~~~~~~~~p~~~~~~~d~~p-EVRqaAsYGiGvl-----aq~--------- 915 (1075)
T KOG2171|consen 871 -LIEG--------CGEA-----------SAKYKERFLPLVLEALQDSDP-EVRQAAAYGMGVL-----AQF--------- 915 (1075)
T ss_pred -HHHh--------cccc-----------cchHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHH-----HHH---------
Confidence 1111 1121 135668888888888888777 7999999876543 332
Q ss_pred CCCCCCCCCCCcccccchhhHHHHHHHHHHHHhhcccCHH------HHHHHHHHHHhhhhccccCCCCCCccchhhHHHH
Q 000103 1937 IPSENSSLHFEPQEAGNMYAHQVLVIWFTCIKLLEDEDDG------IRQRLAIDVQKCFSLRRFGSSSHGVPNQVEKVIE 2010 (2224)
Q Consensus 1937 ~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~LLeDeD~~------iR~~~a~~v~~~~~~~~~~~~~~~vp~q~~~vle 2010 (2224)
++..|+..+.+.--.+.+.+|..+.. .++.+.-+|+|++.. ++ ..+| +++|+.
T Consensus 916 --------------~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~---~~--~~i~--vdqvl~ 974 (1075)
T KOG2171|consen 916 --------------GGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLF---NP--NRIP--VDQVLP 974 (1075)
T ss_pred --------------cCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHh---CC--ccCc--HHHHHH
Confidence 12337777888877888888876654 556666677888742 33 4455 899999
Q ss_pred HHHHHHH--HHhcCchhhHHHHHHHHhcc
Q 000103 2011 LSFEHLS--SIFGCWIEYFDYLCQWVLVA 2037 (2224)
Q Consensus 2011 ~~f~~l~--~~f~~~~~y~~~l~~~~~~~ 2037 (2224)
.+|.||- .-+-.|..-++||+.+.=+.
T Consensus 975 ~~l~~LPl~~D~eEa~~iy~~l~~L~e~n 1003 (1075)
T KOG2171|consen 975 AWLSWLPLKEDKEEAVPIYTFLSDLYESN 1003 (1075)
T ss_pred HHHHhCCCccchhhhhhHHHHHHHHHHhC
Confidence 9999974 33445555668888886553
No 15
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=68.97 E-value=5.9 Score=32.65 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=20.8
Q ss_pred HHHHhhcccCHHHHHHHHHHHHhhh
Q 000103 1965 TCIKLLEDEDDGIRQRLAIDVQKCF 1989 (2224)
Q Consensus 1965 ~~~~LLeDeD~~iR~~~a~~v~~~~ 1989 (2224)
.++++|+|++..||.+++..+.++.
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4679999999999999999887664
No 16
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=60.49 E-value=2.9e+02 Score=34.91 Aligned_cols=112 Identities=20% Similarity=0.282 Sum_probs=61.4
Q ss_pred HHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHh
Q 000103 1712 LERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLF 1791 (2224)
Q Consensus 1712 ~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~ 1791 (2224)
++..+..|.+.....|.++|+.+.+.+...-.. ..+.. ....|-..+.+-+.+.+--+ ...++|++.
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~-----------d~v~~-~~~tL~~~~~k~lkkg~~~E-~~lA~~~l~ 111 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLP-----------DFVED-RRETLLDALLKSLKKGKSEE-QALAARALA 111 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH-----------HHHHH-HHHHHHHHHHHHhccCCHHH-HHHHHHHHH
Confidence 345566778889999999999999998643321 11222 11224555666666555422 334556554
Q ss_pred ccchhhhhhcCCCccccccccC-CCCCchh-HHHHHHHHHhhhh-chhhHhHHHHHHHHHHHH
Q 000103 1792 TWNLLQFQKLGSNVCTETIFVG-SVDCDSV-VQFWDRLMSSYEL-TRHAKIKESLINCMAICI 1851 (2224)
Q Consensus 1792 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~w~~l~~~~~~-~~~~~~r~~~i~~~~~~~ 1851 (2224)
..-+ .+| +.+.+.. ..+...|..+... +.+.+.|..++.|||+|.
T Consensus 112 Ll~l---------------tlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~ 159 (309)
T PF05004_consen 112 LLAL---------------TLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICT 159 (309)
T ss_pred HHhh---------------hcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence 3333 111 1111111 2233334444333 457788999999999953
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.16 E-value=5.9e+02 Score=37.16 Aligned_cols=147 Identities=20% Similarity=0.174 Sum_probs=92.6
Q ss_pred cHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000103 694 LVDWLVLALTHADELLRVDAAESLFLNPKTASLPSHLELTLMKEAVPLNMRSCSTAFQMKWTSLFRKFFSRVRTALERQF 773 (2224)
Q Consensus 694 ~~e~L~~aL~H~d~~VRi~ALeLL~~SpKtT~ppS~~EL~LIk~fL~~nl~~~s~~~Rq~~~SllKkfl~RlR~s~~r~~ 773 (2224)
+.+.|.+.|..+|..+|-.|=+.+-.-.++++ .+-.+. .+--.+++|..||=-.-++||++.|+..++
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-----~l~~L~---~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l---- 72 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP-----LLPALA---HILATSADPQVRQLAAVLLRKLLTKHWSRL---- 72 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc-----hHHHHH---HHHhcCCChHHHHHHHHHHHHHHHHHhhcC----
Confidence 55678888999999999999988877666553 111121 222356789999999999999999953221
Q ss_pred hcCCCCCccccCCCcccccCCchhhHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhHHHHHHHHHHHcCCCCCCCccc
Q 000103 774 KQGSWRPVVSCENSDRTLINGTDTVISKAENLFKFMRWLSCFLFFSCYPSAPYKRKIMAMELILTMMNIWSIAPPQEKLD 853 (2224)
Q Consensus 774 k~~~~~~~~~~~ek~~~~~~~~e~~~~~le~~~~Fl~WL~~fL~~sL~PgAsYqRki~ALklL~~Lle~fg~d~~~~k~~ 853 (2224)
+ .|.. + .-.+.+...+..+= -....-++=..+.+....
T Consensus 73 ---~-----------------~e~~----~---siks~lL~~~~~E~-------~~~vr~k~~dviAeia~~-------- 110 (1075)
T KOG2171|consen 73 ---S-----------------AEVQ----Q---SIKSSLLEIIQSET-------EPSVRHKLADVIAEIARN-------- 110 (1075)
T ss_pred ---C-----------------HHHH----H---HHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHh--------
Confidence 1 0110 1 11222333333331 122233444455554211
Q ss_pred ccccccccccCccCCCCcchHHHHHhhhcCcHHHHHHHHHHHHHhCCCCCCC
Q 000103 854 SVSLESSLYPYNKGITAPNSTLLLVGSIIDSWDRLRESSFRILLHFPSPLPG 905 (2224)
Q Consensus 854 ~~~~~~~~~pf~~~i~~~~~~~lLld~L~DsyddVRe~A~~LL~~fPs~l~g 905 (2224)
..|- -.|+....|++|..|+=+..||.|+.||..+|..+..
T Consensus 111 -------~l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~ 151 (1075)
T KOG2171|consen 111 -------DLPE----KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN 151 (1075)
T ss_pred -------cccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc
Confidence 1111 2467888999999999999999999999999986654
No 18
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=59.85 E-value=83 Score=36.13 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=59.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 000103 1836 HAKIKESLINCMAICIRRFANLFTSSILVDARKKTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGS 1915 (2224)
Q Consensus 1836 ~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~a 1915 (2224)
|+.+|..++-+||-.+.|+.+. ++.|+..+...=.++ -..+|+.|.-.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~-------------------------------ve~~~~~l~~~L~D~-~~~VR~~al~~ 48 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL-------------------------------VEPYLPNLYKCLRDE-DPLVRKTALLV 48 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH-------------------------------HHhHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 5678999999999877777652 234444444333333 46789998888
Q ss_pred HHhhchhhhhhcccccccccCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhhhh
Q 000103 1916 IVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQEAGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKCFS 1990 (2224)
Q Consensus 1916 l~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~~ 1990 (2224)
|..= ..... +.. +.. +-...+.+|+|+|+.||+.|.........
T Consensus 49 Ls~L---i~~d~---------ik~-----------------k~~--l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 49 LSHL---ILEDM---------IKV-----------------KGQ--LFSRILKLLVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred HHHH---HHcCc---------eee-----------------hhh--hhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 7662 11111 100 111 22345578899999999999999998874
No 19
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=57.77 E-value=48 Score=32.71 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=59.7
Q ss_pred HHHHhhc-CCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHh
Q 000103 1713 ERLVRSL-SDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLF 1791 (2224)
Q Consensus 1713 ~~l~~~L-~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~ 1791 (2224)
+.|+..| +|+.+.||..+.+.|-+. . .....+.+.+++ +.+++.-...+.+-|.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~-~-----------------------~~~~~~~L~~~l-~d~~~~vr~~a~~aL~ 56 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL-G-----------------------DPEAIPALIELL-KDEDPMVRRAAARALG 56 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC-T-----------------------HHHHHHHHHHHH-TSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc-C-----------------------CHhHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 4567777 899999999999998744 1 012355666766 6788887777777776
Q ss_pred ccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHH
Q 000103 1792 TWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMA 1848 (2224)
Q Consensus 1792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~ 1848 (2224)
.... ...+..+......+....+|+.++..+|
T Consensus 57 ~i~~-------------------------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 57 RIGD-------------------------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp CCHH-------------------------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HhCC-------------------------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 5532 2235557777878777777888887775
No 20
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=54.18 E-value=6.3e+02 Score=35.90 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHcCCCcchhhHHhHHHHHHHHHhccCCCchhhhchHHHHHHHHHHHHhccccCCchhhhhhccchhhh
Q 000103 1334 PTVHAFNILRAAFNDTNLAADTSAFSAEALIISIRSFSSPYWEIRNSACLAYTALIRRMLGFLNVQKRESARRALTGLEF 1413 (2224)
Q Consensus 1334 PqVHALNiLRaIF~Ds~Ls~~~~~Yi~~aL~lAi~~F~S~~WaIRNsAlMLFsALi~RifG~~~~~~~~s~r~~~t~~eF 1413 (2224)
.-+.+++.+=.+|.+.. .-....+..++.....+.|.+|+...-.|..|. +.||.... +
T Consensus 295 ~a~~~~~~l~~l~~~~~------d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~-~~~~~~~~------~-------- 353 (759)
T KOG0211|consen 295 AAVESLVSLLDLLDDDD------DVVKSLTESLVQAVEDGSWRVSYMVADKFSELS-SAVGPSAT------R-------- 353 (759)
T ss_pred HHHHHHHHHHHhcCCch------hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHH-HHhccccC------c--------
Confidence 34444555555555543 344455667788889999999999999998875 56664111 1
Q ss_pred hhcCCChHHHHHHHHHHHHhhhcCCCCCCcccccccccccchHHHHHHHhccCCCCCCCCCCCCCCccccHHHHHHHhCC
Q 000103 1414 FHRYPSLHPFIFNELRVITELLGNASSGQSASNLANVVHPSLCPMLILLCRLKPSALAGESGDDLDPFLFMPFIRRCSTQ 1493 (2224)
Q Consensus 1414 F~RYP~L~~fLl~~L~~a~~~l~~~~s~~~es~~a~~~~psLfPiL~LLSRL~Ps~~~~~~~d~L~~~~F~p~I~rcl~s 1493 (2224)
|.+.+...++++..-.. + .-..+..+ .-|...-+..+ + .+... ....|.++.+..+
T Consensus 354 ----~~~~~~~~~l~~~~~~e------~--r~a~a~~~-----~~l~~~l~~~~--~---~~i~~--~~ilp~~~~lv~d 409 (759)
T KOG0211|consen 354 ----TQLVPPVSNLLKDEEWE------V--RYAIAKKV-----QKLACYLNASC--Y---PNIPD--SSILPEVQVLVLD 409 (759)
T ss_pred ----ccchhhHHHHhcchhhh------h--hHHhhcch-----HHHhhhcCccc--c---cccch--hhhhHHHHHHHhc
Confidence 33444444444332110 0 00011111 11111111111 0 11122 2357999999999
Q ss_pred CChHHHHHHHHHhhccCCCCChHHHHHHHHH
Q 000103 1494 SNLKVRVLASRALTGLVPNEKLPDVLLNIAS 1524 (2224)
Q Consensus 1494 ~~~~VRelAARALasLv~~~~i~~~i~~Ll~ 1524 (2224)
++-+||...|-.++.+.|-.-...++..++.
T Consensus 410 ~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp 440 (759)
T KOG0211|consen 410 NALHVRSALASVITGLSPILPKERTISELLP 440 (759)
T ss_pred ccchHHHHHhccccccCccCCcCcCccccCh
Confidence 9999999999998888665544444444443
No 21
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=52.89 E-value=31 Score=45.22 Aligned_cols=207 Identities=14% Similarity=0.167 Sum_probs=109.5
Q ss_pred hhHhhhchhHHHhhhccCCCccccchhHHHHHHHHHHHHHHHHhhcccccCCCCCCCchhHHHHHHHHHhhcCCCcchhh
Q 000103 368 KTILYNGILPELCSYCENPTDSHFNFHALTVLQICLQQIKTSILANLTNVSFDYDPIPEDMGTRILRIIWNNLEDPLSQT 447 (2224)
Q Consensus 368 ~~~l~d~i~~~~~~~c~~~~d~h~~f~Al~~L~~~l~~~K~~l~~~~~~~~~~~~~~~~~~~~rlL~~Iw~nWE~Pl~~~ 447 (2224)
-..+.+.+...+..-|.||-+.||+..-+|++.++... .-.++ ++.+..+.+.+|--..+=|.+=
T Consensus 65 ~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~---~~~~~------------~~~v~~~E~~L~P~f~~ILq~d 129 (435)
T PF03378_consen 65 AVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF---VCEAD------------PEAVSQFEEALFPPFQEILQQD 129 (435)
T ss_dssp HHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH---S-GGG------------HH---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh---ccCCC------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677888999999999999999987554 22222 3444455555554444444333
Q ss_pred H----HHHHHHHHHHHHHHhhhcccCCCchhchHHHHHHHHHHhC-CCccccccccHHHHHhhh---ChhhHhhcCccHH
Q 000103 448 V----KQVHLVFDLFLDIESSLRWDVGSERIKSFLQKIASDLLCL-GPRCKGRYVPLALLTKRL---GAKTLLGMSPDLL 519 (2224)
Q Consensus 448 ~----~Q~~~iF~~LL~I~~~~~~~~~~~~~~~Fl~~i~~~LL~l-~w~~KgKY~~L~~Lv~~l---Ga~~iL~l~p~ll 519 (2224)
+ --+-+|+..||+.|.. ..--+....+..-|+.- -|.++|-.=.|..|+.-+ |+..+. .++-+
T Consensus 130 V~EF~PYvfQIla~Lle~~~~-------~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~--~~~~l 200 (435)
T PF03378_consen 130 VQEFIPYVFQILAQLLELRPS-------SPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIV--ANNQL 200 (435)
T ss_dssp -TTTHHHHHHHHHHHHHHSS---------S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------S-C
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------CCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhc--chhhH
Confidence 2 2345677777777641 11122455666666644 499999998888888864 777663 23333
Q ss_pred HHHHHH----cccCCccccHHHHHHHHHHHHHhhhhccCCCCcchhhHHhcchhHHHHHhh-----cCchhHHHhhHhhh
Q 000103 520 SEIVNA----YIDDDVCSAATSFLKCFLECLRDECWSSNGISRGYAVYRGHCLPPFLYGLA-----SGVSKLRSNLNTYA 590 (2224)
Q Consensus 520 ~ell~a----M~d~~v~~aA~~lL~~l~~~L~~e~~~~~~~~~~~~~W~~~Wv~PLl~~L~-----s~~~~l~~~I~~Y~ 590 (2224)
..+++. +....-=.++=++++++++.+..+.+ +. |+++++..|. +..++....+...+
T Consensus 201 ~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l---------~~----yl~~I~~lll~RLq~skT~kf~~~fv~F~ 267 (435)
T PF03378_consen 201 EPILGVFQKLIASKANDHYGFDLLESIVENLPPEAL---------EP----YLKQIFTLLLTRLQSSKTEKFVKRFVVFL 267 (435)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHH---------GG----GHHHHHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHH---------HH----HHHHHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence 444332 22222235577899999998876543 22 3444444433 23333333444333
Q ss_pred hhhhhccCcCcHHHHHHhhcc
Q 000103 591 LPVLLDMDVDSIFPMLAFVSV 611 (2224)
Q Consensus 591 LP~LfK~dp~sl~~mL~~L~~ 611 (2224)
--...|..|+.+...++-++.
T Consensus 268 ~~~~~~~g~~~li~~id~IQ~ 288 (435)
T PF03378_consen 268 SLFAIKYGPDFLIQTIDSIQP 288 (435)
T ss_dssp HHHHHHH-HHHHHHHHHTTST
T ss_pred HHHHHHcCHHHHHHHHHHhcC
Confidence 344455567666555555543
No 22
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=52.67 E-value=1.9e+02 Score=35.90 Aligned_cols=116 Identities=13% Similarity=0.245 Sum_probs=72.4
Q ss_pred HHHHHHHHhhhhchhhHhHHHHHHHHHHHHH---HHHHHHhhhhhhhhhhhhccccccccccccchHHHHHHHHHHHHHh
Q 000103 1822 QFWDRLMSSYELTRHAKIKESLINCMAICIR---RFANLFTSSILVDARKKTIEISESDHLGRSAHLFACITAFVNIINR 1898 (2224)
Q Consensus 1822 ~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~ 1898 (2224)
.+++.++--+-...+..+|+.++.|+|.|.- +++. +.+..|.+.++.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~------------------------------~~l~l~~~~~~~ 75 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK------------------------------EHLPLFLQALQK 75 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH------------------------------HHHHHHHHHHHh
Confidence 5677777666777788999999999999664 2221 123444444422
Q ss_pred hcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHhhcccCHHHH
Q 000103 1899 HSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQEAGNMYAHQVLVIWFTCIKLLEDEDDGIR 1978 (2224)
Q Consensus 1899 ~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~LLeDeD~~iR 1978 (2224)
.+.++|..|..+|.-- +...+. ..+ .....+. .+-....+ =....+.|+++++.+|
T Consensus 76 -----~~~~v~~~al~~l~Dl--l~~~g~--~~~-----~~~~~~~-------~~~~~~~l---~~~l~~~l~~~~~~~~ 131 (298)
T PF12719_consen 76 -----DDEEVKITALKALFDL--LLTHGI--DIF-----DSESDND-------ESVDSKSL---LKILTKFLDSENPELQ 131 (298)
T ss_pred -----CCHHHHHHHHHHHHHH--HHHcCc--hhc-----cchhccC-------ccchHhHH---HHHHHHHHhcCCHHHH
Confidence 3889999999999765 222111 001 1100000 01111233 3447788999999999
Q ss_pred HHHHHHHHhhhhc
Q 000103 1979 QRLAIDVQKCFSL 1991 (2224)
Q Consensus 1979 ~~~a~~v~~~~~~ 1991 (2224)
..+++-+-|.+-.
T Consensus 132 ~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 132 AIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999843
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.25 E-value=5.7e+02 Score=34.78 Aligned_cols=345 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHcCCchHHHHhHHHHHHHHHHHHhhccccchhhhhccCChhHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhhhhhhhh
Q 000103 1212 LLCSNDLRLCRLTESWMEQLMERTVAKGQIVDDLLRRSAGIPAAFIALFLAEPEGAPKKLLPQALRWLIDVANRSLLDLI 1291 (2224)
Q Consensus 1212 L~~s~~~~L~~LP~~WL~~lL~~i~~~~qsv~~lTRRSAGLP~li~aIL~aEp~~~~~~LL~~~m~~Ll~iA~~~~~~~~ 1291 (2224)
++..+.++..++.+.-|.+.+.+|.++-.+ .++--=+|.++..+=+++|. +=..++.|+.++.+.+-.+..
T Consensus 216 ~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s----~d~~~~i~vlv~~l~ss~~~-----iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 216 MLSDSSDEVRTLTDTLLSEFLAEIRSSPSS----MDYDDMINVLVPHLQSSEPE-----IQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHhcCccc----cCcccchhhccccccCCcHH-----HHHHHHHHHHHHhcCCCcchh
Q ss_pred hhcc----cc-cccccccCCccccccCCCCCccccccCccccCCCCcchHHHHHH--HHHHHcCCCcchhhHHhHHHHHH
Q 000103 1292 ENKG----AK-TTMCEFSHSNQETESAVPPDIYATWNSSKIRDEGVVPTVHAFNI--LRAAFNDTNLAADTSAFSAEALI 1364 (2224)
Q Consensus 1292 d~~~----~~-~~~~~~~~~~~~~~s~~~~~~~~~e~~s~~~de~~lPqVHALNi--LRaIF~Ds~Ls~~~~~Yi~~aL~ 1364 (2224)
.... .+ +|+++. ++...--+-.++. |..+|....+.++ --+...+.
T Consensus 287 ~~~s~il~~iLpc~s~~-------------------------e~~~i~~~a~~~n~~l~~l~s~~~~~~~--id~~~ii~ 339 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDT-------------------------EEMSIKEYAQMVNGLLLKLVSSERLKEE--IDYGSIIE 339 (675)
T ss_pred hhhhhhhhhcccCCCCC-------------------------ccccHHHHHHHHHHHHHHHHhhhhhccc--cchHHHHH
Q ss_pred HHHhccCCCchhhhchHHHHHHHHHHHHhccccCCchhhhhhccchhhhhhcCCChHHHHHHHHHHHHhhhcCCCCCCcc
Q 000103 1365 ISIRSFSSPYWEIRNSACLAYTALIRRMLGFLNVQKRESARRALTGLEFFHRYPSLHPFIFNELRVITELLGNASSGQSA 1444 (2224)
Q Consensus 1365 lAi~~F~S~~WaIRNsAlMLFsALi~RifG~~~~~~~~s~r~~~t~~eFF~RYP~L~~fLl~~L~~a~~~l~~~~s~~~e 1444 (2224)
+.-+.+++..=.-|=|++==-..|.++.=| +.+-..-.+.+.|++.|.+..+.
T Consensus 340 vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-----------------ql~~h~~~if~tLL~tLsd~sd~---------- 392 (675)
T KOG0212|consen 340 VLTKYLSDDREETRIAVLNWIILLYHKAPG-----------------QLLVHNDSIFLTLLKTLSDRSDE---------- 392 (675)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHhhCcc-----------------hhhhhccHHHHHHHHhhcCchhH----------
Q ss_pred cccccccccchHHHHHHHhccCCCCCCCCCCCCCCccccHHHHHHHhCCCChHHHHHHH---HHhhccCCCCChHHHHHH
Q 000103 1445 SNLANVVHPSLCPMLILLCRLKPSALAGESGDDLDPFLFMPFIRRCSTQSNLKVRVLAS---RALTGLVPNEKLPDVLLN 1521 (2224)
Q Consensus 1445 s~~a~~~~psLfPiL~LLSRL~Ps~~~~~~~d~L~~~~F~p~I~rcl~s~~~~VRelAA---RALasLv~~~~i~~~i~~ 1521 (2224)
-+--.|.+++.+--++ ......+|.--+.....-..--++.-++ |-++.++.++.+..++..
T Consensus 393 ---------vvl~~L~lla~i~~s~------~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ 457 (675)
T KOG0212|consen 393 ---------VVLLALSLLASICSSS------NSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIAD 457 (675)
T ss_pred ---------HHHHHHHHHHHHhcCc------ccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHH
Q ss_pred HHHHhhhhcccCCcCccccccCCCCCCh-----hHhHHHHHHHHHH--HHhhccccCcchhhhhhHHHHHHHHhhhcccc
Q 000103 1522 IASELLCVEGQNEAAPVSSLRGTHRASF-----NLIHGILLQLGSL--LDANCRNLVDFSKKDQILGDLIKVLGNCSWIA 1594 (2224)
Q Consensus 1522 Ll~~L~~~~~~~~~~~~~~~~~~~~~s~-----N~lHG~LLqi~~L--L~~~~~~~~d~~~~~~~~~~l~~~l~~~~wl~ 1594 (2224)
|++.= ....+ -.+|+.||..-+| |+...+.+.. .....++.++=+ +|-
T Consensus 458 ILe~e------------------~nl~FAstMV~~Ln~iLlTStELf~LR~~Lk~lsn-----~es~~lF~cLy~-sWc- 512 (675)
T KOG0212|consen 458 ILERE------------------ENLKFASTMVQALNTILLTSTELFQLRNKLKDLSN-----EESQNLFCCLYR-SWC- 512 (675)
T ss_pred HHhcc------------------ccchHHHHHHHHHHhhhcccHHHHHHHHHHHhccC-----hhhhHHHHHHHH-HHc-
Q ss_pred CCCCCC------cHHHHHHHHHHHHHHHHHHHhhccCcchhhHHHHHHHHhhhhccccccCCCccCCCCHHHHHHHHHhh
Q 000103 1595 NPKRCP------CPILNASFLKVLDHMLSIARACHTSKSFSTVRNLLLELSTDCLDVDASYGLTYYDPTITELRKKAANS 1668 (2224)
Q Consensus 1595 ~~~~~~------Cpv~~a~yL~Vl~~ll~~~~~~~~~~~~~~i~~~l~~l~~~~l~~~~~~~~~~~~p~~~~l~~~aa~~ 1668 (2224)
+|| |..++. |-..-+.+...+ ..+---.++.|+-+.+--.| .|.+.+.+=||-+..-+.
T Consensus 513 ---hnPva~~SLClLtQn-YqhA~~liq~fa-------~~eitvd~L~elDKLVqLiE----sPIFtylRLqLLe~~~~p 577 (675)
T KOG0212|consen 513 ---HNPVATLSLCLLTQN-YQHAYDLIQLFA-------DVEITVDFLVELDKLVQLIE----SPIFTYLRLQLLEPKNNP 577 (675)
T ss_pred ---CCcHHHHHHHHHHHH-HHHHHHHHHHHh-------hhhhhHHHHHHHHHHHHHHh----cchHHHHHHHHhccccCc
Q ss_pred hhhccc
Q 000103 1669 YFSCVF 1674 (2224)
Q Consensus 1669 ~~~~v~ 1674 (2224)
|+..++
T Consensus 578 yL~kaL 583 (675)
T KOG0212|consen 578 YLHKAL 583 (675)
T ss_pred hHHHHH
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=51.72 E-value=7.6e+02 Score=33.30 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=34.2
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHhhccCCCCChHHHH
Q 000103 1481 FLFMPFIRRCSTQSNLKVRVLASRALTGLVPNEKLPDVL 1519 (2224)
Q Consensus 1481 ~~F~p~I~rcl~s~~~~VRelAARALasLv~~~~i~~~i 1519 (2224)
....|.|..|+++++..|-+.|+++|..+.......+.+
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 358999999999999999999999999999877665554
No 25
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.71 E-value=7e+02 Score=34.85 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=74.4
Q ss_pred HHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHh
Q 000103 1712 LERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLF 1791 (2224)
Q Consensus 1712 ~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~ 1791 (2224)
-.+|...|+|+.--.|-.||+.|-+.+.|+-+- + . +.+ =|.+|+..|..|+...-+++++.+||
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~--------d--a-vK~-----h~d~Ii~sLkterDvSirrravDLLY 394 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEFSI--------D--A-VKK-----HQDTIINSLKTERDVSIRRRAVDLLY 394 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccchH--------H--H-HHH-----HHHHHHHHhccccchHHHHHHHHHHH
Confidence 345777899999999999999999998764431 1 1 222 28899999999999999999999999
Q ss_pred ccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHH
Q 000103 1792 TWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFAN 1856 (2224)
Q Consensus 1792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~ 1856 (2224)
.+-=. + .....+=+.| .|-.+-..-+||.++--.|++.-+||.
T Consensus 395 ~mcD~---------~-----------Nak~IV~elL--qYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 395 AMCDV---------S-----------NAKQIVAELL--QYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHhch---------h-----------hHHHHHHHHH--HHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 76432 0 1112222222 233334555788888788887777764
No 26
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=48.46 E-value=2.2e+02 Score=33.17 Aligned_cols=67 Identities=9% Similarity=0.248 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCcchhhhHHHHHHHHHHHcCCCCCCCcccccccccccccCccCCCCcchHHHHHhhhcCc
Q 000103 805 LFKFMRWLSCFLFFSCYPSAPYKRKIMAMELILTMMNIWSIAPPQEKLDSVSLESSLYPYNKGITAPNSTLLLVGSIIDS 884 (2224)
Q Consensus 805 ~~~Fl~WL~~fL~~sL~PgAsYqRki~ALklL~~Lle~fg~d~~~~k~~~~~~~~~~~pf~~~i~~~~~~~lLld~L~Ds 884 (2224)
.+.|+..+.+..... ..+=+..|++++..+++- |+-.|.. .+-.|+.+..|+
T Consensus 6 ~Qryl~~Il~~~~~~-----~~~vr~~Al~~l~~il~q-GLvnP~~----------------------cvp~lIAL~ts~ 57 (187)
T PF12830_consen 6 VQRYLKNILELCLSS-----DDSVRLAALQVLELILRQ-GLVNPKQ----------------------CVPTLIALETSP 57 (187)
T ss_pred HHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHhc-CCCChHH----------------------HHhHhhhhhCCC
Confidence 356666666654433 556678999999999986 6533211 234678889999
Q ss_pred HHHHHHHHHHHHHhC
Q 000103 885 WDRLRESSFRILLHF 899 (2224)
Q Consensus 885 yddVRe~A~~LL~~f 899 (2224)
-..+|..|..+|...
T Consensus 58 ~~~ir~~A~~~l~~l 72 (187)
T PF12830_consen 58 NPSIRSRAYQLLKEL 72 (187)
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999999999863
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=47.79 E-value=8e+02 Score=32.45 Aligned_cols=359 Identities=17% Similarity=0.200 Sum_probs=180.5
Q ss_pred cHHHHHHHhCCCChHHHHHHHHHhhccCCCCChHHHHHHHHHHhhhhcccCCcCccccccCCCCCChhHhHHHHHHHHHH
Q 000103 1483 FMPFIRRCSTQSNLKVRVLASRALTGLVPNEKLPDVLLNIASELLCVEGQNEAAPVSSLRGTHRASFNLIHGILLQLGSL 1562 (2224)
Q Consensus 1483 F~p~I~rcl~s~~~~VRelAARALasLv~~~~i~~~i~~Ll~~L~~~~~~~~~~~~~~~~~~~~~s~N~lHG~LLqi~~L 1562 (2224)
....+++-+.+++-.+|.+|=|+++.+..++-+...+..+..-+. ..+..-..-.++++..+
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~------------------~~~~~VRk~A~~~l~~i 141 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLS------------------DPSPYVRKKAALALLKI 141 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHH------------------SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhc------------------CCchHHHHHHHHHHHHH
Confidence 567788999999999999999999998865554444444444332 23456677778888888
Q ss_pred HHhhccccCcchhhhhhHHHHHHHHhhhccccCCCCCCcHHHHHHHHHHHHHHHHHHHhhccCcch-hhHHHHHHHHhhh
Q 000103 1563 LDANCRNLVDFSKKDQILGDLIKVLGNCSWIANPKRCPCPILNASFLKVLDHMLSIARACHTSKSF-STVRNLLLELSTD 1641 (2224)
Q Consensus 1563 L~~~~~~~~d~~~~~~~~~~l~~~l~~~~wl~~~~~~~Cpv~~a~yL~Vl~~ll~~~~~~~~~~~~-~~i~~~l~~l~~~ 1641 (2224)
.+...... ... ..+.+.+.+.. . . |.+..+-+.++..+ . +.. +.+ .-+......+++.
T Consensus 142 ~~~~p~~~----~~~-~~~~l~~lL~d------~--~--~~V~~~a~~~l~~i-~----~~~-~~~~~~~~~~~~~L~~~ 200 (526)
T PF01602_consen 142 YRKDPDLV----EDE-LIPKLKQLLSD------K--D--PSVVSAALSLLSEI-K----CND-DSYKSLIPKLIRILCQL 200 (526)
T ss_dssp HHHCHCCH----HGG-HHHHHHHHTTH------S--S--HHHHHHHHHHHHHH-H----CTH-HHHTTHHHHHHHHHHHH
T ss_pred hccCHHHH----HHH-HHHHHhhhccC------C--c--chhHHHHHHHHHHH-c----cCc-chhhhhHHHHHHHhhhc
Confidence 87632111 011 23333333321 1 1 33444445555544 1 000 000 1222233333332
Q ss_pred hccccccCCCccCCCCHHHHHHHHHhhhhhccccccccchhhhhccCcccCCCCCccccCCCCCcch--hhhHHHHHhhc
Q 000103 1642 CLDVDASYGLTYYDPTITELRKKAANSYFSCVFQASEESGEEVLQMPQRCSPVDSTLSKIPDMENTF--SGLLERLVRSL 1719 (2224)
Q Consensus 1642 ~l~~~~~~~~~~~~p~~~~l~~~aa~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~L 1719 (2224)
. . +| +++-.......+..... . ..... ..+.+.+..+|
T Consensus 201 l---------~--~~--~~~~q~~il~~l~~~~~------------------~---------~~~~~~~~~~i~~l~~~l 240 (526)
T PF01602_consen 201 L---------S--DP--DPWLQIKILRLLRRYAP------------------M---------EPEDADKNRIIEPLLNLL 240 (526)
T ss_dssp H---------T--CC--SHHHHHHHHHHHTTSTS------------------S---------SHHHHHHHHHHHHHHHHH
T ss_pred c---------c--cc--chHHHHHHHHHHHhccc------------------C---------ChhhhhHHHHHHHHHHHh
Confidence 1 0 11 11111111111111111 0 00111 35666778888
Q ss_pred CCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHhccchhhhh
Q 000103 1720 SDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLFTWNLLQFQ 1799 (2224)
Q Consensus 1720 ~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~~~~~~~~~ 1799 (2224)
.+..+.|+..+.+.+.+...+.. .....-..+.+++. .+++.=.+-+|+.|...-..
T Consensus 241 ~s~~~~V~~e~~~~i~~l~~~~~-------------------~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~--- 297 (526)
T PF01602_consen 241 QSSSPSVVYEAIRLIIKLSPSPE-------------------LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQS--- 297 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSHH-------------------HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCH---
T ss_pred hccccHHHHHHHHHHHHhhcchH-------------------HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcc---
Confidence 89999999999999997632111 11233445556555 55665566677766544332
Q ss_pred hcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccc
Q 000103 1800 KLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKKTIEISESDHL 1879 (2224)
Q Consensus 1800 ~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1879 (2224)
. .+..+ .....+.....+...-+|...+..+.. ++. . +
T Consensus 298 -----~-----------~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~----l~~----~----------~------- 335 (526)
T PF01602_consen 298 -----N-----------PPAVF-NQSLILFFLLYDDDPSIRKKALDLLYK----LAN----E----------S------- 335 (526)
T ss_dssp -----C-----------HHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHH----H------H----------H-------
T ss_pred -----c-----------chhhh-hhhhhhheecCCCChhHHHHHHHHHhh----ccc----c----------c-------
Confidence 0 01111 111122222223333344444433333 111 1 0
Q ss_pred cccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcccccchhhHHH
Q 000103 1880 GRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQEAGNMYAHQV 1959 (2224)
Q Consensus 1880 ~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1959 (2224)
+....++.+.+.+... ...++|..++.+|... +.. + |. ...+|-
T Consensus 336 ----n~~~Il~eL~~~l~~~----~d~~~~~~~i~~I~~l-----a~~---~------~~-----------~~~~~v--- 379 (526)
T PF01602_consen 336 ----NVKEILDELLKYLSEL----SDPDFRRELIKAIGDL-----AEK---F------PP-----------DAEWYV--- 379 (526)
T ss_dssp ----HHHHHHHHHHHHHHHC------HHHHHHHHHHHHHH-----HHH---H------GS-----------SHHHHH---
T ss_pred ----chhhHHHHHHHHHHhc----cchhhhhhHHHHHHHH-----Hhc---c------Cc-----------hHHHHH---
Confidence 0112234444444222 1334899999998886 222 0 00 001111
Q ss_pred HHHHHHHHHhhcccCHHHHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHHHHhcCchhhHHHHHHHHhcc
Q 000103 1960 LVIWFTCIKLLEDEDDGIRQRLAIDVQKCFSLRRFGSSSHGVPNQVEKVIELSFEHLSSIFGCWIEYFDYLCQWVLVA 2037 (2224)
Q Consensus 1960 l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~~~~~~~~~~~~vp~q~~~vle~~f~~l~~~f~~~~~y~~~l~~~~~~~ 2037 (2224)
-+++++|+..++.++..+...+.+++.. .|...+++++..++++.+ -...+ ..-..-|++|+
T Consensus 380 ----~~l~~ll~~~~~~~~~~~~~~i~~ll~~---------~~~~~~~~l~~L~~~l~~--~~~~~-~~~~~~wilGE 441 (526)
T PF01602_consen 380 ----DTLLKLLEISGDYVSNEIINVIRDLLSN---------NPELREKILKKLIELLED--ISSPE-ALAAAIWILGE 441 (526)
T ss_dssp ----HHHHHHHHCTGGGCHCHHHHHHHHHHHH---------STTTHHHHHHHHHHHHTS--SSSHH-HHHHHHHHHHH
T ss_pred ----HHHHHhhhhccccccchHHHHHHHHhhc---------ChhhhHHHHHHHHHHHHH--hhHHH-HHHHHHhhhcc
Confidence 2678888888888888888888888732 233457778888888777 22222 46667788886
No 28
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.35 E-value=78 Score=43.43 Aligned_cols=220 Identities=23% Similarity=0.309 Sum_probs=119.0
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCccccHHHHHHHhCCCChHHHHHHHHHhhccCCC-CChHHHHHHHHHHhhhhcccCCc
Q 000103 1457 PMLILLCRLKPSALAGESGDDLDPFLFMPFIRRCSTQSNLKVRVLASRALTGLVPN-EKLPDVLLNIASELLCVEGQNEA 1535 (2224)
Q Consensus 1457 PiL~LLSRL~Ps~~~~~~~d~L~~~~F~p~I~rcl~s~~~~VRelAARALasLv~~-~~i~~~i~~Ll~~L~~~~~~~~~ 1535 (2224)
..|-+|++|+-+. .+ .+|+|.|+.|+.+++-=||.=|--|+-++... +++....-+|+.......
T Consensus 118 ~TLRFLckLkE~E-------Ll--epl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e----- 183 (948)
T KOG1058|consen 118 STLRFLCKLKEPE-------LL--EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTE----- 183 (948)
T ss_pred hhhhhhhhcCcHH-------Hh--hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhc-----
Confidence 3566788887553 23 36999999999999999999998887776655 444344444444432111
Q ss_pred CccccccCCCCCChhHhHHHHHHH-----HHHHHhhccccCcchhhhhhHHHH-HHHHhhhccccCCCCCCcHHHHHHHH
Q 000103 1536 APVSSLRGTHRASFNLIHGILLQL-----GSLLDANCRNLVDFSKKDQILGDL-IKVLGNCSWIANPKRCPCPILNASFL 1609 (2224)
Q Consensus 1536 ~~~~~~~~~~~~s~N~lHG~LLqi-----~~LL~~~~~~~~d~~~~~~~~~~l-~~~l~~~~wl~~~~~~~Cpv~~a~yL 1609 (2224)
. +..-.-|+.-+.+.+= .||.. +....++. ...+..+ ++.+.. .-. .-|--++-|+
T Consensus 184 -~------DpsCkRNAFi~L~~~D~ErAl~Yl~~-~idqi~~~---~~~LqlViVE~Irk-v~~------~~p~~~~~~i 245 (948)
T KOG1058|consen 184 -Q------DPSCKRNAFLMLFTTDPERALNYLLS-NIDQIPSF---NDSLQLVIVELIRK-VCL------ANPAEKARYI 245 (948)
T ss_pred -c------CchhHHHHHHHHHhcCHHHHHHHHHh-hHhhccCc---cHHHHHHHHHHHHH-HHh------cCHHHhhHHH
Confidence 0 1233457777766543 33332 22222221 1233332 222221 111 2366788899
Q ss_pred HHHHHHHHHHHhhccCcchhhHHHHHHHHhhhhccccccCC-CccCCCCHHHHHHHHHhhhhhccccccccchhhhh-cc
Q 000103 1610 KVLDHMLSIARACHTSKSFSTVRNLLLELSTDCLDVDASYG-LTYYDPTITELRKKAANSYFSCVFQASEESGEEVL-QM 1687 (2224)
Q Consensus 1610 ~Vl~~ll~~~~~~~~~~~~~~i~~~l~~l~~~~l~~~~~~~-~~~~~p~~~~l~~~aa~~~~~~v~~~~~~~~~~~~-~~ 1687 (2224)
+++-.+|+.. ...--| |..+- .... + -++..|.||..|+.++..-++....-+. +-
T Consensus 246 ~~i~~lL~st---ssaV~f-----------------Eaa~tlv~lS-~-~p~alk~Aa~~~i~l~~kesdnnvklIvldr 303 (948)
T KOG1058|consen 246 RCIYNLLSST---SSAVIF-----------------EAAGTLVTLS-N-DPTALKAAASTYIDLLVKESDNNVKLIVLDR 303 (948)
T ss_pred HHHHHHHhcC---Cchhhh-----------------hhcceEEEcc-C-CHHHHHHHHHHHHHHHHhccCcchhhhhHHH
Confidence 8777766431 100001 10000 0111 1 1445678888888776654433211111 11
Q ss_pred CcccCCCCCccccCCCCCcchhhhHHHHHhhcCCchhHhHHHHHHHHHHhhh
Q 000103 1688 PQRCSPVDSTLSKIPDMENTFSGLLERLVRSLSDSSYEVRLSTLKWLLKFLK 1739 (2224)
Q Consensus 1688 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~ 1739 (2224)
... +... ..--+.+|.-.+++.|+.+..|||-.||...++...
T Consensus 304 l~~-------l~~~--~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 304 LSE-------LKAL--HEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred HHH-------Hhhh--hHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhh
Confidence 110 1000 011257777788899999999999999999999843
No 29
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.04 E-value=1.1e+03 Score=32.82 Aligned_cols=144 Identities=27% Similarity=0.326 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHcCCCcchhhHHhHHHHHHHHHhccCCCchhhhchHHHHHHHHHHHHhccccCCchhhhhhccchhhhh
Q 000103 1335 TVHAFNILRAAFNDTNLAADTSAFSAEALIISIRSFSSPYWEIRNSACLAYTALIRRMLGFLNVQKRESARRALTGLEFF 1414 (2224)
Q Consensus 1335 qVHALNiLRaIF~Ds~Ls~~~~~Yi~~aL~lAi~~F~S~~WaIRNsAlMLFsALi~RifG~~~~~~~~s~r~~~t~~eFF 1414 (2224)
-.-|+-+|-.+|++--| +...|++. +.+.++.|-||-|+.+.++|+-.-. |. -|.
T Consensus 375 SAAaLDVLanvf~~elL-~~l~PlLk-------~~L~~~~W~vrEagvLAlGAIAEGc---------------M~--g~~ 429 (885)
T KOG2023|consen 375 SAAALDVLANVFGDELL-PILLPLLK-------EHLSSEEWKVREAGVLALGAIAEGC---------------MQ--GFV 429 (885)
T ss_pred cHHHHHHHHHhhHHHHH-HHHHHHHH-------HHcCcchhhhhhhhHHHHHHHHHHH---------------hh--hcc
Confidence 35689999999887433 22333333 3557799999999999999975422 22 277
Q ss_pred hcCCChHHHHHHHHHHHHhhhcCCCCCCcccccccccccchHHHHHHHhccCCCCCCCCCCCCCCccccHH---HHHHHh
Q 000103 1415 HRYPSLHPFIFNELRVITELLGNASSGQSASNLANVVHPSLCPMLILLCRLKPSALAGESGDDLDPFLFMP---FIRRCS 1491 (2224)
Q Consensus 1415 ~RYP~L~~fLl~~L~~a~~~l~~~~s~~~es~~a~~~~psLfPiL~LLSRL~Ps~~~~~~~d~L~~~~F~p---~I~rcl 1491 (2224)
..-|.|.|||+..|.+-.... -+++-- -|||..+--... ..+ .-|.| -+.+++
T Consensus 430 p~LpeLip~l~~~L~DKkplV--------RsITCW-----------TLsRys~wv~~~-~~~----~~f~pvL~~ll~~l 485 (885)
T KOG2023|consen 430 PHLPELIPFLLSLLDDKKPLV--------RSITCW-----------TLSRYSKWVVQD-SRD----EYFKPVLEGLLRRL 485 (885)
T ss_pred cchHHHHHHHHHHhccCccce--------eeeeee-----------eHhhhhhhHhcC-ChH----hhhHHHHHHHHHHH
Confidence 788999999999985421100 011000 133433221111 111 12444 356677
Q ss_pred CCCChHHHHHHHHHhhccCC--CCChHHHHHHHHHHhh
Q 000103 1492 TQSNLKVRVLASRALTGLVP--NEKLPDVLLNIASELL 1527 (2224)
Q Consensus 1492 ~s~~~~VRelAARALasLv~--~~~i~~~i~~Ll~~L~ 1527 (2224)
-..+-+|-|.|--|++-|-. .+++...+..|+..+.
T Consensus 486 lD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~ 523 (885)
T KOG2023|consen 486 LDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLV 523 (885)
T ss_pred hcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 78899999999999988865 3445556667777664
No 30
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=34.83 E-value=34 Score=35.92 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=27.1
Q ss_pred ccHHHHHHHhCCCChHHHHHHHHHhhccCC
Q 000103 1482 LFMPFIRRCSTQSNLKVRVLASRALTGLVP 1511 (2224)
Q Consensus 1482 ~F~p~I~rcl~s~~~~VRelAARALasLv~ 1511 (2224)
.++|.|.+|+++++|+||..|..+|-.++.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k 56 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISK 56 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999877754
No 31
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=34.09 E-value=2.3e+02 Score=38.49 Aligned_cols=256 Identities=22% Similarity=0.217 Sum_probs=137.6
Q ss_pred chHHHHHHHhccCCCCCCCCCCCCCCccccHHHHHHHhCCCChHHHHHH---HHHhhccCCCCChHHHHHHHHHHhhhhc
Q 000103 1454 SLCPMLILLCRLKPSALAGESGDDLDPFLFMPFIRRCSTQSNLKVRVLA---SRALTGLVPNEKLPDVLLNIASELLCVE 1530 (2224)
Q Consensus 1454 sLfPiL~LLSRL~Ps~~~~~~~d~L~~~~F~p~I~rcl~s~~~~VRelA---ARALasLv~~~~i~~~i~~Ll~~L~~~~ 1530 (2224)
.++..-.....|.|+.... ..++.|.|..|.++..=.||+.| +||+..-++...+...+-.++..+.
T Consensus 195 ~~~a~~~~~~~Lg~~~EPy-------iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~--- 264 (569)
T KOG1242|consen 195 ALLAFEAAQGNLGPPFEPY-------IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLL--- 264 (569)
T ss_pred HHHHHHHHHHhcCCCCCch-------HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHH---
Confidence 3444444555555543211 13689999999999999999865 6667777777777777777777764
Q ss_pred ccCCcCccccccCCCCCChhHhHHHHHHHHHHHHhhccccCcchhhhhhHHHHHHHHhhhccccCCCCCCcHHHHHHHHH
Q 000103 1531 GQNEAAPVSSLRGTHRASFNLIHGILLQLGSLLDANCRNLVDFSKKDQILGDLIKVLGNCSWIANPKRCPCPILNASFLK 1610 (2224)
Q Consensus 1531 ~~~~~~~~~~~~~~~~~s~N~lHG~LLqi~~LL~~~~~~~~d~~~~~~~~~~l~~~l~~~~wl~~~~~~~Cpv~~a~yL~ 1610 (2224)
...++.--+.+-.+..+.... +..-+...++++..+....|=.. |-++++..+
T Consensus 265 ---------------~~kWrtK~aslellg~m~~~a------p~qLs~~lp~iiP~lsevl~DT~------~evr~a~~~ 317 (569)
T KOG1242|consen 265 ---------------EAKWRTKMASLELLGAMADCA------PKQLSLCLPDLIPVLSEVLWDTK------PEVRKAGIE 317 (569)
T ss_pred ---------------HHhhhhHHHHHHHHHHHHHhc------hHHHHHHHhHhhHHHHHHHccCC------HHHHHHHHH
Confidence 124455445444444333321 11123455677777776667642 678999988
Q ss_pred HHHHHHHHHHhhccCcchhhHHHHHHHHh-------hhhccccccCCCccC--CCCHHH---HHH------------HHH
Q 000103 1611 VLDHMLSIARACHTSKSFSTVRNLLLELS-------TDCLDVDASYGLTYY--DPTITE---LRK------------KAA 1666 (2224)
Q Consensus 1611 Vl~~ll~~~~~~~~~~~~~~i~~~l~~l~-------~~~l~~~~~~~~~~~--~p~~~~---l~~------------~aa 1666 (2224)
.+..+-++-.. ...+.+.+.+.+-- -.|++....+-+--| .|+++- +-+ +++
T Consensus 318 ~l~~~~svidN----~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~ 393 (569)
T KOG1242|consen 318 TLLKFGSVIDN----PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTA 393 (569)
T ss_pred HHHHHHHhhcc----HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHH
Confidence 87776544211 01222223222221 123333222222222 344322 222 221
Q ss_pred h-hhhhccccccccchhhhhccCcccCCCCCccccCCCCCcchhhhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCch
Q 000103 1667 N-SYFSCVFQASEESGEEVLQMPQRCSPVDSTLSKIPDMENTFSGLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDR 1745 (2224)
Q Consensus 1667 ~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~ 1745 (2224)
+ ...-|-++ .+ ++ +..--+..|.+.|-+.+-+..+|||..+.|+|-..++.-+-.
T Consensus 394 ~IidNm~~Lv---------eD-p~-------------~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~- 449 (569)
T KOG1242|consen 394 IIIDNMCKLV---------ED-PK-------------DLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV- 449 (569)
T ss_pred HHHHHHHHhh---------cC-HH-------------HHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh-
Confidence 1 11111111 00 00 112245777888888888999999999999996665422110
Q ss_pred hhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHH
Q 000103 1746 EVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLL 1790 (2224)
Q Consensus 1746 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il 1790 (2224)
. . ..+-+.+.+.+..|+--.|.--..+-+
T Consensus 450 ----------~----f--~d~~p~l~e~~~~~k~~~~~~g~aq~l 478 (569)
T KOG1242|consen 450 ----------S----F--DDLIPELSETLTSEKSLVDRSGAAQDL 478 (569)
T ss_pred ----------c----c--cccccHHHHhhccchhhhhhHHHhhhH
Confidence 0 0 334555667776776666665554444
No 32
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=28.21 E-value=3.9e+02 Score=30.61 Aligned_cols=101 Identities=21% Similarity=0.268 Sum_probs=57.1
Q ss_pred hhccCCchhhHHHHHHhhhhhhhH--HHHHHHHHHHHHHhCCCCCCCCcCcceeehhHHHHhhcCCcc-chHHHHHhHhH
Q 000103 97 MFLENSLPLHRTLVSALAKERKFQ--ALIVSCFRDLCDEYGGGGRASDQNKRFCVSRVVLSVMSLPKL-GYLMDVIQDCA 173 (2224)
Q Consensus 97 ~f~~~s~~~h~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 173 (2224)
.|.++.-+.=|.+++.|.+-.... +....++..+++.=++.-. ++|=. .-|++ +++.-.+.-..
T Consensus 60 ~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~---------l~Rei----~tp~l~~~i~~ll~l~~ 126 (165)
T PF08167_consen 60 ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT---------LTREI----ATPNLPKFIQSLLQLLQ 126 (165)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc---------hHHHH----hhccHHHHHHHHHHHHh
Confidence 677888888899999999855533 2355666666653222211 12211 12333 22221111100
Q ss_pred HHHHHHHhhhhhHHHHHhhhccCCChhHHHHHHHHHHHHHHHHhhhccccccCCCchhhHHHHHHHHH
Q 000103 174 VLVAWDVVLGLNGVVLETQEWARPSPIVMEQCQEALSCLYYLLQRCLDKFKGLSGQKESIMEMIFVVL 241 (2224)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~me~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~l 241 (2224)
. .+.-..++.++..|+++||..|+.+ .+.+++++..+
T Consensus 127 ~---------------------------~~~~~~~l~~L~~ll~~~ptt~rp~----~~ki~~~l~~l 163 (165)
T PF08167_consen 127 D---------------------------SSCPETALDALATLLPHHPTTFRPF----ANKIESALLSL 163 (165)
T ss_pred c---------------------------cccHHHHHHHHHHHHHHCCccccch----HHHHHHHHHHH
Confidence 0 2223467888889999999999876 45566655544
No 33
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.95 E-value=4.6e+02 Score=33.76 Aligned_cols=141 Identities=13% Similarity=0.136 Sum_probs=85.9
Q ss_pred HHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccc-ccccccchHHHHHHHHHHHHHhhcC
Q 000103 1823 FWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKKTIEISES-DHLGRSAHLFACITAFVNIINRHSS 1901 (2224)
Q Consensus 1823 ~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~v~lv~~~s~ 1901 (2224)
.|..++. |.+.+++.+|+.+...+|-|..- .+.+ ..+.+. +-.-.+++..+
T Consensus 125 gl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qN-------------------NP~~Qe~v~E~-------~~L~~Ll~~ls- 176 (342)
T KOG2160|consen 125 GLVPLLG-YLENSDAELRELAARVIGTAVQN-------------------NPKSQEQVIEL-------GALSKLLKILS- 176 (342)
T ss_pred CHHHHHH-HhcCCcHHHHHHHHHHHHHHHhc-------------------CHHHHHHHHHc-------ccHHHHHHHHc-
Confidence 4888888 88889999999999888886541 1111 011111 23345566666
Q ss_pred CCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHhhcc--cCHHHHH
Q 000103 1902 SSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQEAGNMYAHQVLVIWFTCIKLLED--EDDGIRQ 1979 (2224)
Q Consensus 1902 ~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~LLeD--eD~~iR~ 1979 (2224)
.+.|.+.|-.|--||-+ |..... | |+ -.-.-+..|-+++..||+ .++-.+.
T Consensus 177 ~~~~~~~r~kaL~Aiss---LIRn~~----------~-g~-------------~~fl~~~G~~~L~~vl~~~~~~~~lkr 229 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISS---LIRNNK----------P-GQ-------------DEFLKLNGYQVLRDVLQSNNTSVKLKR 229 (342)
T ss_pred cCCCchHHHHHHHHHHH---HHhcCc----------H-HH-------------HHHHhcCCHHHHHHHHHcCCcchHHHH
Confidence 78889988776655544 333221 1 11 011235679999999999 7888888
Q ss_pred HHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHHHHhcCchhhH
Q 000103 1980 RLAIDVQKCFSLRRFGSSSHGVPNQVEKVIELSFEHLSSIFGCWIEYF 2027 (2224)
Q Consensus 1980 ~~a~~v~~~~~~~~~~~~~~~vp~q~~~vle~~f~~l~~~f~~~~~y~ 2027 (2224)
++...++..+.. .+...+-+-.+-|.+.--.+..|.+++
T Consensus 230 K~~~Ll~~Ll~~---------~~s~~d~~~~~~f~~~~~~l~~~l~~~ 268 (342)
T KOG2160|consen 230 KALFLLSLLLQE---------DKSDEDIASSLGFQRVLENLISSLDFE 268 (342)
T ss_pred HHHHHHHHHHHh---------hhhhhhHHHHhhhhHHHHHHhhccchh
Confidence 888888888732 222233444455555555555555544
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=25.92 E-value=5.5e+02 Score=32.20 Aligned_cols=124 Identities=20% Similarity=0.203 Sum_probs=68.8
Q ss_pred HHHHHHHhhcccCHHHHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHHHHhcCchhhHHHHHHHHhccCCcc
Q 000103 1962 IWFTCIKLLEDEDDGIRQRLAIDVQKCFSLRRFGSSSHGVPNQVEKVIELSFEHLSSIFGCWIEYFDYLCQWVLVAASHV 2041 (2224)
Q Consensus 1962 ~W~~~~~LLeDeD~~iR~~~a~~v~~~~~~~~~~~~~~~vp~q~~~vle~~f~~l~~~f~~~~~y~~~l~~~~~~~~~~~ 2041 (2224)
.|-..+++|+-.|..|...++.++...+..+.... .. -+++++...|+||.++...
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~--~~---~~~~~l~~ll~~L~~~l~~------------------- 161 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS--EK---LVKEALPKLLQWLSSQLSS------------------- 161 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT----HH---HHHHHHHHHHHHHH-TT-H-------------------
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc--cc---hHHHHHHHHHHHHHHhhcC-------------------
Confidence 79999999999999999999999999986433322 10 1146677777777764433
Q ss_pred ccCCCeeeeeccccccchhhhHHHHHHHHHHhhhccccchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 000103 2042 VSGGDLVRRVFDKEIDNHHEEKLLISQICCCQLEKIPILKSWVADSLNKDHARNYILGWRQRFSHQLMSFAKDHGRKYEG 2121 (2224)
Q Consensus 2042 ~~~~d~vr~lFdkE~dN~~~E~Ll~~Q~~~~~l~k~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~l~~~~~~~~~~~~~ 2121 (2224)
+..-..++|...++.+...+ +.|... |..+....++. .++..
T Consensus 162 --------------------~~~~~~~~av~~L~~LL~~~----------~~R~~f--~~~~~v~~l~~----iL~~~-- 203 (312)
T PF03224_consen 162 --------------------SDSELQYIAVQCLQNLLRSK----------EYRQVF--WKSNGVSPLFD----ILRKQ-- 203 (312)
T ss_dssp --------------------HHH---HHHHHHHHHHHTSH----------HHHHHH--HTHHHHHHHHH----HHH----
T ss_pred --------------------CCcchHHHHHHHHHHHhCcc----------hhHHHH--HhcCcHHHHHH----HHHhh--
Confidence 11111166777777765442 222222 33444444433 33211
Q ss_pred ccccccccCCccchHHHHHHHHHHHHhhhhh
Q 000103 2122 VDWIGGVGNHKDAFLPLYANLLGFYALSICI 2152 (2224)
Q Consensus 2122 ~~w~gg~~~~~d~F~~~~~~llg~~~l~~~~ 2152 (2224)
+-..++.-+.-.|..++-+|-|+-.-
T Consensus 204 -----~~~~~~~~~Ql~Y~~ll~lWlLSF~~ 229 (312)
T PF03224_consen 204 -----ATNSNSSGIQLQYQALLCLWLLSFEP 229 (312)
T ss_dssp ------------HHHHHHHHHHHHHHHTTSH
T ss_pred -----cccCCCCchhHHHHHHHHHHHHhcCH
Confidence 12234555889999999999998653
No 35
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=25.55 E-value=2.5e+02 Score=32.94 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=69.2
Q ss_pred HHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhcccc---chhhhhhhh------hhhhHHHHHHHhhhcCCcchHHH
Q 000103 1715 LVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSY---EIKSIQNWT------KNNLQATLMSRLELEKNPRCTNY 1785 (2224)
Q Consensus 1715 l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~---~~~~~~~~~------~~~l~~~~~~~l~~E~~~~C~~~ 1785 (2224)
+-+.+.|+..-||.+|+..|-..+....+- .-++.+ ....+.... ...|+..++..|..|+++.+.-.
T Consensus 45 lt~il~Dp~~kvR~aA~~~l~~lL~gsk~~---L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 45 LTCILKDPSPKVRAAAASALAALLEGSKPF---LAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred hHHHHcCCchhHHHHHHHHHHHHHHccHHH---HHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 445677999999999988877655322210 111111 011111111 12378899999999999999999
Q ss_pred HHhHHhc-cchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHH
Q 000103 1786 VLRLLFT-WNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAI 1849 (2224)
Q Consensus 1786 ~l~il~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~ 1849 (2224)
+||++.. -.-.++.+++. +=.-.+|+.+..+... +..-+|-..+-|||.
T Consensus 122 ~lK~la~Lv~~tPY~rL~~--------------~ll~~~v~~v~~~l~~-~d~~v~v~~l~~~~~ 171 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRLPP--------------GLLTEVVTQVRPLLRH-RDPNVRVAALSCLGA 171 (182)
T ss_pred HHHHHHHHHccCChhhcCH--------------hHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHH
Confidence 9999973 23323344431 2223456545444444 444467777778877
No 36
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=24.32 E-value=1.8e+02 Score=28.60 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=41.5
Q ss_pred HHHHHH-cCCChhHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHH
Q 000103 697 WLVLAL-THADELLRVDAAESLFLNPKTASLPSHLELTLMKEAVPLNMRSCSTAFQMKWTSLFRKF 761 (2224)
Q Consensus 697 ~L~~aL-~H~d~~VRi~ALeLL~~SpKtT~ppS~~EL~LIk~fL~~nl~~~s~~~Rq~~~SllKkf 761 (2224)
.|.+.| .+++..+|..|...|+.. -++.....+...+ +++++.+|...+..+.++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~------~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGEL------GDPEAIPALIELL----KDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCC------THHHHHHHHHHHH----TSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc------CCHhHHHHHHHHH----cCCCHHHHHHHHHHHHHh
Confidence 355555 999999999999999943 2334455555554 779999999999988875
No 37
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=23.61 E-value=2.1e+02 Score=36.99 Aligned_cols=140 Identities=18% Similarity=0.210 Sum_probs=76.4
Q ss_pred CcchHHHHHHHHHHHcC--CCcchhhHHhHHHHHHHHHhccCCCchhhhchHHHHHHHHHHHHhccccCCchhhhhhccc
Q 000103 1332 VVPTVHAFNILRAAFND--TNLAADTSAFSAEALIISIRSFSSPYWEIRNSACLAYTALIRRMLGFLNVQKRESARRALT 1409 (2224)
Q Consensus 1332 ~lPqVHALNiLRaIF~D--s~Ls~~~~~Yi~~aL~lAi~~F~S~~WaIRNsAlMLFsALi~RifG~~~~~~~~s~r~~~t 1409 (2224)
..|+.=|.|.||.+.+. ....+-+..|+...+.--- .-.+..|.-.-+|+.|+++|..|..+... |-.+...-+.
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~-~~~~~~w~~KD~Al~Li~ala~k~~t~~~--Gvt~~~~~v~ 301 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYA-SNPSNNWRSKDGALYLIGALASKGSTTKS--GVTQTNELVD 301 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TTT-HHHHHHHHHHHHHHHBSS--BTT--B-S-B-TTS-
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-hCCcccHHHHHHHHHHHHHHHhhhccccC--Cccccccccc
Confidence 46999999999999754 2222334455555444221 23567999999999999999999865321 1111122344
Q ss_pred hhhhhhcCCChHHHHHHHHHHHHhhhcCCCCCCcccccccccccch----HHHHHHHhccCCCCCCCCCCCCCCccccHH
Q 000103 1410 GLEFFHRYPSLHPFIFNELRVITELLGNASSGQSASNLANVVHPSL----CPMLILLCRLKPSALAGESGDDLDPFLFMP 1485 (2224)
Q Consensus 1410 ~~eFF~RYP~L~~fLl~~L~~a~~~l~~~~s~~~es~~a~~~~psL----fPiL~LLSRL~Ps~~~~~~~d~L~~~~F~p 1485 (2224)
..+||+.+ ++-+|+ . +. ..||-| .=.+..++..-|.+ .+ ....|
T Consensus 302 v~~Ff~~~------v~peL~-~------~~----------~~~piLka~aik~~~~Fr~~l~~~-------~l--~~~~~ 349 (370)
T PF08506_consen 302 VVDFFSQH------VLPELQ-P------DV----------NSHPILKADAIKFLYTFRNQLPKE-------QL--LQIFP 349 (370)
T ss_dssp HHHHHHHH------TCHHHH--------SS-----------S-HHHHHHHHHHHHHHGGGS-HH-------HH--HHHHH
T ss_pred HHHHHHHH------hHHHhc-c------cC----------CCCcchHHHHHHHHHHHHhhCCHH-------HH--HHHHH
Confidence 45788775 111222 0 00 112111 01112222222221 11 35899
Q ss_pred HHHHHhCCCChHHHHHHHHHh
Q 000103 1486 FIRRCSTQSNLKVRVLASRAL 1506 (2224)
Q Consensus 1486 ~I~rcl~s~~~~VRelAARAL 1506 (2224)
.+.+|+++++.-|+.-||.|+
T Consensus 350 ~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 350 LLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhCCCCcchhhhhhhhC
Confidence 999999999999999999885
No 38
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.20 E-value=8.7e+02 Score=34.07 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCCCH-HHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000103 695 VDWLVLALTHADELLRVDAAESLFLNPKTASLPSH-LELTLMKEAVPLNMRSCSTAFQMKWTSLFRKFFSRVRTALERQF 773 (2224)
Q Consensus 695 ~e~L~~aL~H~d~~VRi~ALeLL~~SpKtT~ppS~-~EL~LIk~fL~~nl~~~s~~~Rq~~~SllKkfl~RlR~s~~r~~ 773 (2224)
-+.+-++|...|++||+.||.||-. +++. .-+++.|.-+.+....+...+|++++ .||=+.+.+.
T Consensus 338 kdlIlrcL~DkD~SIRlrALdLl~g------mVskkNl~eIVk~LM~~~~~ae~t~yrdell-------~~II~iCS~s- 403 (877)
T KOG1059|consen 338 KDLILRCLDDKDESIRLRALDLLYG------MVSKKNLMEIVKTLMKHVEKAEGTNYRDELL-------TRIISICSQS- 403 (877)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHH------HhhhhhHHHHHHHHHHHHHhccchhHHHHHH-------HHHHHHhhhh-
Confidence 3468899999999999999999965 3332 34778888888878877778888764 4554433211
Q ss_pred hcCCCCCccccCCCcccccCCchhhHHHHHHHHHHHHHHHHHHhhc-ccCCCCcchhhhHHHHHHHHHHH
Q 000103 774 KQGSWRPVVSCENSDRTLINGTDTVISKAENLFKFMRWLSCFLFFS-CYPSAPYKRKIMAMELILTMMNI 842 (2224)
Q Consensus 774 k~~~~~~~~~~~ek~~~~~~~~e~~~~~le~~~~Fl~WL~~fL~~s-L~PgAsYqRki~ALklL~~Lle~ 842 (2224)
..+ +..=+.||...|.+= -.||..+.+.| |=+++.+.+++
T Consensus 404 ---------------------------nY~-~ItdFEWYlsVlveLa~l~~~~~G~~I-~eQi~Dv~iRV 444 (877)
T KOG1059|consen 404 ---------------------------NYQ-YITDFEWYLSVLVELARLEGTRHGSLI-AEQIIDVAIRV 444 (877)
T ss_pred ---------------------------hhh-hhhhHHHHHHHHHHHHhccccchhhHH-HHHHHHHheec
Confidence 122 233358998888754 46776666554 34555555544
No 39
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.28 E-value=7.6e+02 Score=34.52 Aligned_cols=69 Identities=16% Similarity=0.087 Sum_probs=49.4
Q ss_pred cHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhcccccC-CCCHHHHHHHHHHHHHHHHH
Q 000103 694 LVDWLVLALTHADELLRVDAAESLFLNPKTASLPSHLELTLMKEAVPLNMR-SCSTAFQMKWTSLFRKFFSR 764 (2224)
Q Consensus 694 ~~e~L~~aL~H~d~~VRi~ALeLL~~SpKtT~ppS~~EL~LIk~fL~~nl~-~~s~~~Rq~~~SllKkfl~R 764 (2224)
....|.++|.|.+.++|-.|||-+|.=-. .-++.++..-=+.-+-..++ ..+.++|++.+.++..|.-|
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~s--s~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLAS--SEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHh--ccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 45679999999999999999999987322 24444443332333344566 67789999999999888765
No 40
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=20.48 E-value=4.4e+02 Score=30.76 Aligned_cols=154 Identities=15% Similarity=0.092 Sum_probs=96.0
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcccccchhhHHHHHHHHHHHH
Q 000103 1889 ITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQEAGNMYAHQVLVIWFTCIK 1968 (2224)
Q Consensus 1889 ~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~ 1968 (2224)
+++|.+-|-+.|- +.-..+|++|.+.|... ... | +.|| .+.. =+++.
T Consensus 6 ~Qryl~~Il~~~~-~~~~~vr~~Al~~l~~i-----l~q-G--LvnP-------------~~cv-----------p~lIA 52 (187)
T PF12830_consen 6 VQRYLKNILELCL-SSDDSVRLAALQVLELI-----LRQ-G--LVNP-------------KQCV-----------PTLIA 52 (187)
T ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-----Hhc-C--CCCh-------------HHHH-----------hHhhh
Confidence 3555555555444 34467999999998875 221 2 3332 1111 24678
Q ss_pred hhcccCHHHHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHHHHhcCchh--------hHHHHHHHHhccCCc
Q 000103 1969 LLEDEDDGIRQRLAIDVQKCFSLRRFGSSSHGVPNQVEKVIELSFEHLSSIFGCWIE--------YFDYLCQWVLVAASH 2040 (2224)
Q Consensus 1969 LLeDeD~~iR~~~a~~v~~~~~~~~~~~~~~~vp~q~~~vle~~f~~l~~~f~~~~~--------y~~~l~~~~~~~~~~ 2040 (2224)
|.-|.+..||..|-...+....+ -+ .-+....-+.++.+|+|-...+++... ++..|-+.+-+....
T Consensus 53 L~ts~~~~ir~~A~~~l~~l~eK---~~--s~v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~ 127 (187)
T PF12830_consen 53 LETSPNPSIRSRAYQLLKELHEK---HE--SLVESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKS 127 (187)
T ss_pred hhCCCChHHHHHHHHHHHHHHHH---hH--HHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHh
Confidence 99999999999998888777632 11 344456778899999999998888664 223333333322110
Q ss_pred cccCCCeeeeeccccc----cchhhhHHHHHHHHHHhhhccccc
Q 000103 2041 VVSGGDLVRRVFDKEI----DNHHEEKLLISQICCCQLEKIPIL 2080 (2224)
Q Consensus 2041 ~~~~~d~vr~lFdkE~----dN~~~E~Ll~~Q~~~~~l~k~~~~ 2080 (2224)
-..=-...-+.||.+. .+.-.+.+-.+-++|.+|.-++-.
T Consensus 128 R~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nLA~l~y~ 171 (187)
T PF12830_consen 128 RRKFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENLATLPYQ 171 (187)
T ss_pred HHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHhcCCCC
Confidence 0000223345566554 455677888888999999999765
No 41
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=20.28 E-value=1.5e+02 Score=31.45 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.2
Q ss_pred HHHHHHcCCChhHHHHHHHHh
Q 000103 697 WLVLALTHADELLRVDAAESL 717 (2224)
Q Consensus 697 ~L~~aL~H~d~~VRi~ALeLL 717 (2224)
.+..|++|-+.+||.||+.+|
T Consensus 15 ~i~sAMTHi~~~Ir~dsl~~L 35 (102)
T PF12333_consen 15 YISSAMTHISPDIREDSLKFL 35 (102)
T ss_pred HHHHHHHhCCHHHHHhHHHHH
Confidence 478999999999999999886
Done!