Query 000103
Match_columns 2224
No_of_seqs 215 out of 273
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 97.0 0.23 8E-06 62.6 30.0 185 1709-1988 401-585 (588)
2 4fdd_A Transportin-1; heat rep 96.8 0.52 1.8E-05 63.3 33.1 152 1710-1918 629-781 (852)
3 4fdd_A Transportin-1; heat rep 96.0 0.98 3.4E-05 60.7 28.4 192 1482-1739 90-285 (852)
4 1qgr_A Protein (importin beta 95.6 3.5 0.00012 54.8 31.0 212 1708-1989 604-826 (876)
5 1u6g_C TIP120 protein, CAND1; 95.5 13 0.00044 52.1 37.4 150 1334-1526 150-301 (1230)
6 2bpt_A Importin beta-1 subunit 95.5 3.7 0.00013 54.5 30.4 134 1333-1511 346-482 (861)
7 1qgr_A Protein (importin beta 94.5 19 0.00065 47.8 35.7 137 1333-1511 343-479 (876)
8 1b3u_A Protein (protein phosph 93.9 6.6 0.00022 49.4 25.5 186 1709-1989 362-547 (588)
9 1wa5_B Importin alpha subunit; 93.6 21 0.00071 45.1 29.5 209 1710-1991 299-511 (530)
10 4b8j_A Importin subunit alpha- 93.5 15 0.00053 46.1 27.9 209 1710-1990 286-496 (528)
11 3ltj_A Alpharep-4; protein eng 92.9 1.7 5.8E-05 47.5 15.7 61 1708-1793 12-72 (201)
12 1oyz_A Hypothetical protein YI 92.5 1.5 5E-05 50.6 15.1 94 1713-1851 26-119 (280)
13 3ltm_A Alpha-REP4; protein eng 91.7 2.9 9.8E-05 46.0 15.8 59 1710-1793 19-77 (211)
14 2bpt_A Importin beta-1 subunit 91.2 50 0.0017 43.7 48.0 32 1482-1513 369-400 (861)
15 1u6g_C TIP120 protein, CAND1; 90.0 80 0.0027 44.2 55.9 152 697-900 52-203 (1230)
16 2vgl_B AP-2 complex subunit be 89.6 55 0.0019 42.2 27.2 65 1483-1565 87-151 (591)
17 2qk2_A LP04448P; mini spindles 87.6 7.6 0.00026 44.0 15.4 187 1483-1742 16-208 (242)
18 1w63_A Adapter-related protein 86.9 39 0.0013 44.0 23.4 102 1712-1854 315-416 (618)
19 1w63_A Adapter-related protein 86.8 35 0.0012 44.4 22.9 47 1456-1511 125-171 (618)
20 4db6_A Armadillo repeat protei 84.1 30 0.001 37.5 17.5 195 1710-1988 12-207 (210)
21 2qk2_A LP04448P; mini spindles 82.8 19 0.00065 40.6 15.7 209 1118-1433 24-232 (242)
22 4db8_A Armadillo-repeat protei 82.4 23 0.00078 39.6 16.0 196 1710-1988 54-249 (252)
23 1ibr_B P95, importin beta-1 su 82.1 27 0.00092 42.3 17.7 120 1709-1858 127-252 (462)
24 2qk1_A Protein STU2; STU2P, XM 80.3 15 0.00051 42.5 13.8 198 1115-1395 22-224 (249)
25 1wa5_B Importin alpha subunit; 78.5 56 0.0019 41.2 19.4 197 1710-1989 87-285 (530)
26 2jdq_A Importin alpha-1 subuni 76.6 77 0.0026 38.3 19.3 195 1711-1989 108-304 (450)
27 2jdq_A Importin alpha-1 subuni 76.2 1.4E+02 0.0049 35.9 28.5 208 1710-1990 234-443 (450)
28 4b8j_A Importin subunit alpha- 75.8 1.7E+02 0.0058 36.6 27.3 200 1709-1990 243-443 (528)
29 2vgl_A Adaptor protein complex 73.3 2.3E+02 0.0078 37.0 28.4 108 1710-1855 329-436 (621)
30 4db8_A Armadillo-repeat protei 73.0 71 0.0024 35.5 16.4 194 1713-1989 15-208 (252)
31 3ul1_B Importin subunit alpha- 69.2 45 0.0015 42.2 15.2 197 1713-1989 60-260 (510)
32 4hxt_A De novo protein OR329; 68.3 1.4E+02 0.0049 32.6 19.1 198 1710-1990 44-241 (252)
33 4hxt_A De novo protein OR329; 66.6 1.5E+02 0.0053 32.4 21.4 194 1713-1989 5-198 (252)
34 1ibr_B P95, importin beta-1 su 65.5 16 0.00054 44.4 9.6 135 1335-1510 276-436 (462)
35 3ul1_B Importin subunit alpha- 65.1 2.8E+02 0.0097 34.9 24.7 203 1710-1990 274-478 (510)
36 2z6g_A B-catenin; FULL-length, 61.4 4.1E+02 0.014 35.5 32.7 118 1709-1851 398-517 (780)
37 3ltm_A Alpha-REP4; protein eng 60.5 66 0.0023 35.0 12.6 119 1712-1919 83-201 (211)
38 1oyz_A Hypothetical protein YI 60.2 93 0.0032 35.4 14.3 100 1711-1849 55-154 (280)
39 3tpo_A Importin subunit alpha- 58.9 94 0.0032 39.4 15.3 201 1712-1989 78-279 (529)
40 3tpo_A Importin subunit alpha- 56.4 3.9E+02 0.013 33.7 25.5 200 1710-1990 293-497 (529)
41 3ltj_A Alpharep-4; protein eng 52.5 1.2E+02 0.0042 32.6 13.0 119 1712-1919 78-196 (201)
42 1wa5_C Importin alpha RE-expor 49.7 23 0.0008 48.4 8.1 148 1333-1512 376-526 (960)
43 2qk1_A Protein STU2; STU2P, XM 46.0 83 0.0028 36.2 10.8 157 1708-1919 58-218 (249)
44 2z6h_A Catenin beta-1, beta-ca 42.9 6.6E+02 0.023 32.4 26.2 30 1482-1511 140-169 (644)
45 1te4_A Conserved protein MTH18 42.7 60 0.002 33.1 8.1 45 1905-1987 86-130 (131)
46 2z6h_A Catenin beta-1, beta-ca 41.2 3.1E+02 0.011 35.4 16.3 205 1709-1989 262-485 (644)
47 2of3_A ZYG-9; multifunctional 39.8 89 0.003 36.9 9.8 112 425-551 126-243 (266)
48 1jdh_A Beta-catenin; beta-cate 36.6 6.8E+02 0.023 30.7 26.0 31 1482-1512 143-173 (529)
49 2of3_A ZYG-9; multifunctional 35.1 5.3E+02 0.018 30.4 15.3 160 697-897 50-232 (266)
50 3now_A UNC-45 protein, SD10334 33.3 6.7E+02 0.023 34.1 17.8 163 369-547 44-236 (810)
51 4db6_A Armadillo repeat protei 33.1 4.8E+02 0.016 27.8 14.4 32 1482-1513 12-43 (210)
52 1jdh_A Beta-catenin; beta-cate 31.8 4.7E+02 0.016 32.1 15.2 72 1709-1793 265-337 (529)
53 2vgl_B AP-2 complex subunit be 25.9 1.1E+03 0.039 30.0 28.4 48 1457-1511 221-268 (591)
54 1xqr_A HSPBP1 protein; armadil 25.1 5.2E+02 0.018 30.5 13.3 107 1825-1990 84-196 (296)
55 1vsy_5 Proteasome activator BL 25.0 92 0.0032 43.2 7.6 103 1483-1594 844-948 (997)
56 3opb_A SWI5-dependent HO expre 23.5 1.5E+03 0.052 30.6 19.5 71 1887-1989 654-727 (778)
57 4ady_A RPN2, 26S proteasome re 20.1 4E+02 0.014 36.9 11.9 65 1965-2036 651-715 (963)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.97 E-value=0.23 Score=62.63 Aligned_cols=185 Identities=11% Similarity=0.112 Sum_probs=103.1
Q ss_pred hhhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHh
Q 000103 1709 SGLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLR 1788 (2224)
Q Consensus 1709 ~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~ 1788 (2224)
..+.+.|..++.|+.+.||..+++.+-...+..... . + ...+-+.+++. ..++++..+..+++
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-----------~-~----~~~l~~~l~~~-l~d~~~~Vr~~a~~ 463 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE-----------F-F----DEKLNSLCMAW-LVDHVYAIREAATS 463 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG-----------G-C----CHHHHHHHHHG-GGCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH-----------H-H----HHHHHHHHHHH-hcCCcHHHHHHHHH
Confidence 456667778889999999999999988765422211 0 0 11233444444 35566666666666
Q ss_pred HHhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000103 1789 LLFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARK 1868 (2224)
Q Consensus 1789 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 1868 (2224)
.+...-.. .+. + .....+-..+..+ ..+.+..+|...+.+++.+.+.+...
T Consensus 464 ~l~~l~~~----~~~-~------------~~~~~llp~l~~~-~~~~~~~~R~~a~~~l~~l~~~~~~~----------- 514 (588)
T 1b3u_A 464 NLKKLVEK----FGK-E------------WAHATIIPKVLAM-SGDPNYLHRMTTLFCINVLSEVCGQD----------- 514 (588)
T ss_dssp HHHHHHHH----HCH-H------------HHHHHTHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHH----hCc-h------------hHHHHHHHHHHHH-hhCCCHHHHHHHHHHHHHHHHhcCHH-----------
Confidence 66433211 000 0 0001122223333 23566788999888888755433221
Q ss_pred hhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCc
Q 000103 1869 KTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEP 1948 (2224)
Q Consensus 1869 ~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 1948 (2224)
..+..++..+.....+. -.++|.+++++|.... ..+|.
T Consensus 515 ------------------~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~-----~~~~~------------------ 552 (588)
T 1b3u_A 515 ------------------ITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIG-----PILDN------------------ 552 (588)
T ss_dssp ------------------HHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHG-----GGSCH------------------
T ss_pred ------------------HHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHH-----HHhch------------------
Confidence 01233333343333333 3589999999998852 21110
Q ss_pred ccccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhh
Q 000103 1949 QEAGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKC 1988 (2224)
Q Consensus 1949 ~~~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~ 1988 (2224)
+.+... +--.+.+|++|+|.+||+.+..++..+
T Consensus 553 ----~~~~~~---~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 553 ----STLQSE---VKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp ----HHHHHH---HHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred ----hhhHHH---HHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 111111 334455689999999999999988754
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.81 E-value=0.52 Score=63.33 Aligned_cols=152 Identities=12% Similarity=0.067 Sum_probs=84.7
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhH
Q 000103 1710 GLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRL 1789 (2224)
Q Consensus 1710 ~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~i 1789 (2224)
.+.+.++.++.|+.++||..+...+-...+.-... +..+ ...+-+.+.+.+ ....++..+.+...
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-------------~~~~-l~~~lp~l~~~l-~~~~~~v~~~a~~a 693 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH-------------VKPC-IADFMPILGTNL-NPEFISVCNNATWA 693 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG-------------TGGG-HHHHHHHHHHTC-CTTSHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHH-------------HHHH-HHHHHHHHHHHc-CccchHHHHHHHHH
Confidence 44556888999999999999998887765432221 1111 112344455555 33345555545444
Q ss_pred HhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhh-chhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000103 1790 LFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYEL-TRHAKIKESLINCMAICIRRFANLFTSSILVDARK 1868 (2224)
Q Consensus 1790 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~-~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 1868 (2224)
+...-.. .+ .+. . +-...+-..++.+... ..+..+++.++.++|+..++....+..+
T Consensus 694 lg~i~~~----~~-~~~--~--------p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~------- 751 (852)
T 4fdd_A 694 IGEISIQ----MG-IEM--Q--------PYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPM------- 751 (852)
T ss_dssp HHHHHHH----HG-GGG--G--------GGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGG-------
T ss_pred HHHHHHH----hh-HhH--H--------HHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCcc-------
Confidence 4432211 10 011 1 2223444556666554 3466789999999999777654433222
Q ss_pred hhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh
Q 000103 1869 KTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVA 1918 (2224)
Q Consensus 1869 ~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~ 1918 (2224)
+...+..|++.+....+ .+.|.+|-+.|..
T Consensus 752 ----------------l~~~~~~~~~~l~~~~d----~~e~~~a~~~l~~ 781 (852)
T 4fdd_A 752 ----------------LQQFIRPWCTSLRNIRD----NEEKDSAFRGICT 781 (852)
T ss_dssp ----------------HHHHHHHHHHHHHTSCS----SHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhccccc----cHHHHHHHHHHHH
Confidence 33456778877764333 3347777777665
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.01 E-value=0.98 Score=60.68 Aligned_cols=192 Identities=15% Similarity=0.207 Sum_probs=109.0
Q ss_pred ccHHHHHHHhCCCChHHHHHHHHHhhccCC---CCChHHHHHHHHHHhhhhcccCCcCccccccCCCCCChhHhHHHHHH
Q 000103 1482 LFMPFIRRCSTQSNLKVRVLASRALTGLVP---NEKLPDVLLNIASELLCVEGQNEAAPVSSLRGTHRASFNLIHGILLQ 1558 (2224)
Q Consensus 1482 ~F~p~I~rcl~s~~~~VRelAARALasLv~---~~~i~~~i~~Ll~~L~~~~~~~~~~~~~~~~~~~~~s~N~lHG~LLq 1558 (2224)
.+++.+.+++.+++-.||..||++++.+.. +..|++.+..|+..+. ..+.+..+|.+.+
T Consensus 90 ~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~------------------~~~~~~r~~al~~ 151 (852)
T 4fdd_A 90 FIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLD------------------SEDYNTCEGAFGA 151 (852)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHS------------------CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHc------------------CCCHHHHHHHHHH
Confidence 467777788889999999999999988864 5678888888887662 3467899999999
Q ss_pred HHHHHHhhccccCcchhhhhhHHHHHHHHhhhccccCCCCCCcHHHHHHHHHHHHHHHHHHHhhccCcch-hhHHHHHHH
Q 000103 1559 LGSLLDANCRNLVDFSKKDQILGDLIKVLGNCSWIANPKRCPCPILNASFLKVLDHMLSIARACHTSKSF-STVRNLLLE 1637 (2224)
Q Consensus 1559 i~~LL~~~~~~~~d~~~~~~~~~~l~~~l~~~~wl~~~~~~~Cpv~~a~yL~Vl~~ll~~~~~~~~~~~~-~~i~~~l~~ 1637 (2224)
+..+.+...... +.......+..++..+.. .+. .+-+-++.+-++.+..+... ..+.+ ..+...+..
T Consensus 152 L~~i~~~~~~~~-~~~~~~~~~~~il~~l~~--~l~----~~~~~vR~~A~~aL~~~~~~-----~~~~~~~~~~~~l~~ 219 (852)
T 4fdd_A 152 LQKICEDSAEIL-DSDVLDRPLNIMIPKFLQ--FFK----HSSPKIRSHAVACVNQFIIS-----RTQALMLHIDSFIEN 219 (852)
T ss_dssp HHHHHHHHTTHH-HHCSSSSCHHHHHHHHTT--TTT----CSSHHHHHHHHHHHHTTTTT-----TCHHHHTSHHHHHHH
T ss_pred HHHHHHHhHHHh-chhhhcchHHHHHHHHHH--Hhc----CCCHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHH
Confidence 999998652211 000001123344444332 121 24466777667766544321 00111 111222222
Q ss_pred HhhhhccccccCCCccCCCCHHHHHHHHHhhhhhccccccccchhhhhccCcccCCCCCccccCCCCCcchhhhHHHHHh
Q 000103 1638 LSTDCLDVDASYGLTYYDPTITELRKKAANSYFSCVFQASEESGEEVLQMPQRCSPVDSTLSKIPDMENTFSGLLERLVR 1717 (2224)
Q Consensus 1638 l~~~~l~~~~~~~~~~~~p~~~~l~~~aa~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 1717 (2224)
+.+... ++ -.+.++.|.. .++...... .+.. ...+.++.+-++.
T Consensus 220 l~~~~~-----------d~-~~~vr~~a~~-~L~~l~~~~----~~~~-------------------~~~l~~l~~~l~~ 263 (852)
T 4fdd_A 220 LFALAG-----------DE-EPEVRKNVCR-ALVMLLEVR----MDRL-------------------LPHMHNIVEYMLQ 263 (852)
T ss_dssp HHHHHT-----------CC-CHHHHHHHHH-HHHHHHHHC----HHHH-------------------GGGHHHHHHHHHH
T ss_pred HHHHcC-----------CC-CHHHHHHHHH-HHHHHHHhC----HHHH-------------------HHHHHHHHHHHHH
Confidence 332211 11 1345565543 121111100 0000 0123456666788
Q ss_pred hcCCchhHhHHHHHHHHHHhhh
Q 000103 1718 SLSDSSYEVRLSTLKWLLKFLK 1739 (2224)
Q Consensus 1718 ~L~~~~yevR~~tlk~ll~~~~ 1739 (2224)
++.|...+||..|++++....+
T Consensus 264 ~~~~~~~~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 264 RTQDQDENVALEACEFWLTLAE 285 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTT
T ss_pred HccCCcHHHHHHHHHHHHHHhc
Confidence 8899999999999999988754
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.62 E-value=3.5 Score=54.76 Aligned_cols=212 Identities=11% Similarity=0.050 Sum_probs=102.6
Q ss_pred hhhhHHHHHhhcCCch--hHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHH
Q 000103 1708 FSGLLERLVRSLSDSS--YEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNY 1785 (2224)
Q Consensus 1708 ~~~l~~~l~~~L~~~~--yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~ 1785 (2224)
...+.+.|+.+|.+.. ..||..+++.+-...+..+.. +..+. ..+-+.+...+....++.-+..
T Consensus 604 ~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~-------------~~~~~-~~~~~~l~~~l~~~~~~~vr~~ 669 (876)
T 1qgr_A 604 SDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE-------------FLKYM-EAFKPFLGIGLKNYAEYQVCLA 669 (876)
T ss_dssp HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG-------------GGGGH-HHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhh-------------HHHHH-HHHHHHHHHHHcCcchHHHHHH
Confidence 3567777888888764 468999998887765533221 11111 1233555666655446665555
Q ss_pred HHhHHhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhh-chhhHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000103 1786 VLRLLFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYEL-TRHAKIKESLINCMAICIRRFANLFTSSILV 1864 (2224)
Q Consensus 1786 ~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~-~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~ 1864 (2224)
++..+..+-.. .+ +.. . +-...+-..++..... +.+..+|..++.++|.+.+.+...+..+
T Consensus 670 a~~~l~~l~~~----~~-~~~------~----~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~--- 731 (876)
T 1qgr_A 670 AVGLVGDLCRA----LQ-SNI------I----PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKY--- 731 (876)
T ss_dssp HHHHHHHHHHH----HG-GGG------H----HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGG---
T ss_pred HHHHHHHHHHH----HH-Hhh------h----hhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHH---
Confidence 66555433221 00 000 0 1112222333333333 2456789999999998766555433222
Q ss_pred hhhhhhccccccccccccchHHHHHHHHHHHHHhhcCCCCC------hHHHHHHHHHHHhhchhhhhhcccccccccCCC
Q 000103 1865 DARKKTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEP------VNMRKAATGSIVASGLLEQADLIGSYVSNHQIP 1938 (2224)
Q Consensus 1865 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p------~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~ 1938 (2224)
+-..+....+......+++.+ .++|.++.+++... +.. .|+.+.+.. +
T Consensus 732 --------------------l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i--~~~---~~~~~~~~~-~ 785 (876)
T 1qgr_A 732 --------------------LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGI--VQG---LKGDQENVH-P 785 (876)
T ss_dssp --------------------HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHH--HHH---HHCSSSSCC-G
T ss_pred --------------------HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHH--HHH---HccCccccc-c
Confidence 111122222222111111111 37899998888653 111 111110000 0
Q ss_pred CCCCCCCCCcccccchhhHHHHHHHHHHHHhhccc--CHHHHHHHHHHHHhhh
Q 000103 1939 SENSSLHFEPQEAGNMYAHQVLVIWFTCIKLLEDE--DDGIRQRLAIDVQKCF 1989 (2224)
Q Consensus 1939 ~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~LLeDe--D~~iR~~~a~~v~~~~ 1989 (2224)
. .+...-|... ++-.+..+.+|+ ++.||..++..+.++.
T Consensus 786 ---~------~~~~~~~~~~---i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~ 826 (876)
T 1qgr_A 786 ---D------VMLVQPRVEF---ILSFIDHIAGDEDHTDGVVACAAGLIGDLC 826 (876)
T ss_dssp ---G------GGGSGGGHHH---HHHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred ---h------HHHHHHHHHH---HHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 0 0111223333 344455666888 7899999988887776
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.53 E-value=13 Score=52.13 Aligned_cols=150 Identities=13% Similarity=0.196 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHHcCCCcchhhHHhHHHHHHHHHhccCCCchhhhchHHHHHHHHHHHHhccccCCchhhhhhccchhhh
Q 000103 1334 PTVHAFNILRAAFNDTNLAADTSAFSAEALIISIRSFSSPYWEIRNSACLAYTALIRRMLGFLNVQKRESARRALTGLEF 1413 (2224)
Q Consensus 1334 PqVHALNiLRaIF~Ds~Ls~~~~~Yi~~aL~lAi~~F~S~~WaIRNsAlMLFsALi~RifG~~~~~~~~s~r~~~t~~eF 1413 (2224)
.+..|+.+|..+..+. +....+|+.+.+..-+..+.++...||..++-.+++++..+ | ..|
T Consensus 150 ~~~~al~~l~~~~~~~--~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~-~----------------~~~ 210 (1230)
T 1u6g_C 150 VQLEALDIMADMLSRQ--GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC-G----------------NIV 210 (1230)
T ss_dssp HHHHHHHHHHHHHHHT--CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc-C----------------HHH
Confidence 4778999998887642 33456799999999999999999999999998887775321 1 023
Q ss_pred hhcCCChHHHHHHHHHHHHhhhcCCCCCCcccccccccccchHHHHHHHhccCCCCCCCCCCCCCCccccHHHHHHHhCC
Q 000103 1414 FHRYPSLHPFIFNELRVITELLGNASSGQSASNLANVVHPSLCPMLILLCRLKPSALAGESGDDLDPFLFMPFIRRCSTQ 1493 (2224)
Q Consensus 1414 F~RYP~L~~fLl~~L~~a~~~l~~~~s~~~es~~a~~~~psLfPiL~LLSRL~Ps~~~~~~~d~L~~~~F~p~I~rcl~s 1493 (2224)
|+.+.+.|.+.|....+ . ......+-.+..+.+..|.... ..+ ..++|.+.+.+.+
T Consensus 211 ---~~~~l~~l~~~L~~~~~----~-----------~~r~~a~~~l~~l~~~~~~~~~----~~l--~~l~~~ll~~l~d 266 (1230)
T 1u6g_C 211 ---FVDLIEHLLSELSKNDS----M-----------STTRTYIQCIAAISRQAGHRIG----EYL--EKIIPLVVKFCNV 266 (1230)
T ss_dssp ---CTTHHHHHHHHHHHTCS----S-----------CSCTTHHHHHHHHHHHSSGGGT----TSC--TTHHHHHHHHHSS
T ss_pred ---HHHHHHHHHHHhccCCc----h-----------hHHHHHHHHHHHHHHHhHHHHH----HHH--HHHHHHHHHHhcC
Confidence 67788888888865310 0 1112345555556555443221 112 3589999999999
Q ss_pred CChHHHHHHHHHhhccCC--CCChHHHHHHHHHHh
Q 000103 1494 SNLKVRVLASRALTGLVP--NEKLPDVLLNIASEL 1526 (2224)
Q Consensus 1494 ~~~~VRelAARALasLv~--~~~i~~~i~~Ll~~L 1526 (2224)
+...||+.|..++..++. .+++...+..++..+
T Consensus 267 ~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~l 301 (1230)
T 1u6g_C 267 DDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC 301 (1230)
T ss_dssp CCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHH
Confidence 999999999999877654 344445566666554
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.49 E-value=3.7 Score=54.50 Aligned_cols=134 Identities=15% Similarity=0.109 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHHHcCCCcchhhHHhHHHHHHHHHhccCCCchhhhchHHHHHHHHHHHHhccccCCchhhhhhccchhh
Q 000103 1333 VPTVHAFNILRAAFNDTNLAADTSAFSAEALIISIRSFSSPYWEIRNSACLAYTALIRRMLGFLNVQKRESARRALTGLE 1412 (2224)
Q Consensus 1333 lPqVHALNiLRaIF~Ds~Ls~~~~~Yi~~aL~lAi~~F~S~~WaIRNsAlMLFsALi~RifG~~~~~~~~s~r~~~t~~e 1412 (2224)
.++..|..+|..+... +++.+ +...+......+.++.|.+|.++++.++++.. | .+.. .
T Consensus 346 ~~r~~a~~~L~~l~~~--~~~~~---~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~---~----~~~~---------~ 404 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQN--CGNHI---LEPVLEFVEQNITADNWRNREAAVMAFGSIMD---G----PDKV---------Q 404 (861)
T ss_dssp HHHHHHHHHHHHHHHH--HGGGG---HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS---S----SCHH---------H
T ss_pred cHHHHHHHHHHHHHHH--ccHhH---HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHc---C----CCHH---------H
Confidence 4667888998877653 23333 33444455566778999999999999988751 1 0000 0
Q ss_pred hhhcCCChHHHHHHHHHHHHhhhcCCCCCCcccccccccccchHHHHHHHhccC---CCCCCCCCCCCCCccccHHHHHH
Q 000103 1413 FFHRYPSLHPFIFNELRVITELLGNASSGQSASNLANVVHPSLCPMLILLCRLK---PSALAGESGDDLDPFLFMPFIRR 1489 (2224)
Q Consensus 1413 FF~RYP~L~~fLl~~L~~a~~~l~~~~s~~~es~~a~~~~psLfPiL~LLSRL~---Ps~~~~~~~d~L~~~~F~p~I~r 1489 (2224)
+-...|.+.+.|.+.|+. +. ..+. ..++..|+++. +.... ....+ ...+|.+.+
T Consensus 405 ~~~~l~~il~~l~~~l~d-------~~---------~~vr---~~a~~~l~~l~~~~~~~~~--~~~~~--~~~l~~l~~ 461 (861)
T 2bpt_A 405 RTYYVHQALPSILNLMND-------QS---------LQVK---ETTAWCIGRIADSVAESID--PQQHL--PGVVQACLI 461 (861)
T ss_dssp HHHHHHHHHHHHHHGGGC-------SC---------HHHH---HHHHHHHHHHHHHHGGGSC--TTTTH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-------Cc---------HHHH---HHHHHHHHHHHHHhhhhcC--CHHHH--HHHHHHHHH
Confidence 111123344444433321 10 0111 12223333322 11110 00112 357888889
Q ss_pred HhCCCChHHHHHHHHHhhccCC
Q 000103 1490 CSTQSNLKVRVLASRALTGLVP 1511 (2224)
Q Consensus 1490 cl~s~~~~VRelAARALasLv~ 1511 (2224)
+++++ ..||..|+.++..++.
T Consensus 462 ~l~~~-~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 462 GLQDH-PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHTSC-HHHHHHHHHHHHHHHH
T ss_pred HhccC-hHHHHHHHHHHHHHHH
Confidence 99887 9999999999987764
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.47 E-value=19 Score=47.79 Aligned_cols=137 Identities=16% Similarity=0.172 Sum_probs=74.3
Q ss_pred cchHHHHHHHHHHHcCCCcchhhHHhHHHHHHHHHhccCCCchhhhchHHHHHHHHHHHHhccccCCchhhhhhccchhh
Q 000103 1333 VPTVHAFNILRAAFNDTNLAADTSAFSAEALIISIRSFSSPYWEIRNSACLAYTALIRRMLGFLNVQKRESARRALTGLE 1412 (2224)
Q Consensus 1333 lPqVHALNiLRaIF~Ds~Ls~~~~~Yi~~aL~lAi~~F~S~~WaIRNsAlMLFsALi~RifG~~~~~~~~s~r~~~t~~e 1412 (2224)
.++.-|..+|..+...- ++. .+...+..-...+.++.|.+|.++++.++.+.. | . +.. .
T Consensus 343 ~~r~~a~~~l~~l~~~~--~~~---~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~---~---~-~~~---------~ 401 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCC--EDD---IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE---G---P-EPS---------Q 401 (876)
T ss_dssp CHHHHHHHHHHHHHHHH--GGG---GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS---S---S-CHH---------H
T ss_pred HHHHHHHHHHHHHHHHC--cHh---hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHc---C---C-CHH---------H
Confidence 46777888888776532 222 344455555667788999999999998877642 1 0 000 0
Q ss_pred hhhcCCChHHHHHHHHHHHHhhhcCCCCCCcccccccccccchHHHHHHHhccCCCCCCCCCCCCCCccccHHHHHHHhC
Q 000103 1413 FFHRYPSLHPFIFNELRVITELLGNASSGQSASNLANVVHPSLCPMLILLCRLKPSALAGESGDDLDPFLFMPFIRRCST 1492 (2224)
Q Consensus 1413 FF~RYP~L~~fLl~~L~~a~~~l~~~~s~~~es~~a~~~~psLfPiL~LLSRL~Ps~~~~~~~d~L~~~~F~p~I~rcl~ 1492 (2224)
+-...|.+.+.|...|++.. ..+....+-+|.-++...+..... ...+ ...+|.+.+++.
T Consensus 402 ~~~~~~~~l~~l~~~l~d~~----------------~~vr~~a~~~l~~~~~~~~~~~~~--~~~l--~~~l~~l~~~l~ 461 (876)
T 1qgr_A 402 LKPLVIQAMPTLIELMKDPS----------------VVVRDTAAWTVGRICELLPEAAIN--DVYL--APLLQCLIEGLS 461 (876)
T ss_dssp HHHHHHHHHHHHHHHHTCSS----------------HHHHHHHHHHHHHHHHHCGGGTSS--TTTH--HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHHHhCchhccc--HHHH--HHHHHHHHHHHc
Confidence 11112445555555542110 011111122222222222221100 0111 357788888888
Q ss_pred CCChHHHHHHHHHhhccCC
Q 000103 1493 QSNLKVRVLASRALTGLVP 1511 (2224)
Q Consensus 1493 s~~~~VRelAARALasLv~ 1511 (2224)
++ .+||+.|++++..++.
T Consensus 462 ~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 462 AE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp SC-HHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHH
Confidence 85 8999999999987763
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=93.88 E-value=6.6 Score=49.43 Aligned_cols=186 Identities=15% Similarity=0.133 Sum_probs=107.6
Q ss_pred hhhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHh
Q 000103 1709 SGLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLR 1788 (2224)
Q Consensus 1709 ~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~ 1788 (2224)
.++.+.+..+|.|...+||..+++.|-...+..... +....+-+.+.+. ..+++.+-+..++.
T Consensus 362 ~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----------------~~~~~~lp~l~~~-~~d~~~~vr~~~~~ 424 (588)
T 1b3u_A 362 EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR----------------QLSQSLLPAIVEL-AEDAKWRVRLAIIE 424 (588)
T ss_dssp HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH----------------HHHHHHHHHHHHH-HTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH----------------HHHHHHHHHHHHH-hcCCCchHHHHHHH
Confidence 456666788899999999999998887765422210 0112233444443 35667776666666
Q ss_pred HHhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000103 1789 LLFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARK 1868 (2224)
Q Consensus 1789 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 1868 (2224)
.+..+-. ..+.... . ..+...++.. -.+.+..+|+.++.++|.+.+.+...+.
T Consensus 425 ~l~~l~~----~~~~~~~-----------~--~~l~~~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--------- 477 (588)
T 1b3u_A 425 YMPLLAG----QLGVEFF-----------D--EKLNSLCMAW-LVDHVYAIREAATSNLKKLVEKFGKEWA--------- 477 (588)
T ss_dssp HHHHHHH----HHCGGGC-----------C--HHHHHHHHHG-GGCSSHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred HHHHHHH----HcCHHHH-----------H--HHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHhCchhH---------
Confidence 6654422 1111000 0 1234444443 3456677999999999886655433110
Q ss_pred hhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCc
Q 000103 1869 KTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEP 1948 (2224)
Q Consensus 1869 ~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 1948 (2224)
+...+..+.... .+....+|.+++++|...+ ...+.
T Consensus 478 --------------------~~~llp~l~~~~-~~~~~~~R~~a~~~l~~l~-----~~~~~------------------ 513 (588)
T 1b3u_A 478 --------------------HATIIPKVLAMS-GDPNYLHRMTTLFCINVLS-----EVCGQ------------------ 513 (588)
T ss_dssp --------------------HHHTHHHHHHTT-TCSCHHHHHHHHHHHHHHH-----HHHHH------------------
T ss_pred --------------------HHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHH-----HhcCH------------------
Confidence 122222232222 2455689999999987652 21110
Q ss_pred ccccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhhh
Q 000103 1949 QEAGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKCF 1989 (2224)
Q Consensus 1949 ~~~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~ 1989 (2224)
..+...+ .-.++++|+|++..||..++..+.++.
T Consensus 514 ----~~~~~~~---~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 514 ----DITTKHM---LPTVLRMAGDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp ----HHHHHHT---HHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred ----HHHHHHH---HHHHHhhCCCCCchHHHHHHHHHHHHH
Confidence 1122222 235677899999999999999998776
No 9
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=93.62 E-value=21 Score=45.10 Aligned_cols=209 Identities=11% Similarity=0.053 Sum_probs=113.1
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhH
Q 000103 1710 GLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRL 1789 (2224)
Q Consensus 1710 ~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~i 1789 (2224)
++.+.|+.+|.++..+||..++..|-........ ..+.....++-+.++.+|... ++.-...++..
T Consensus 299 ~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~-------------~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~a 364 (530)
T 1wa5_B 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL-------------QTQVVINAGVLPALRLLLSSP-KENIKKEACWT 364 (530)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-------------HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHH-------------HHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHH
Confidence 4556788899999999999999998877532111 011112234455666766554 56666666666
Q ss_pred HhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHH--HHhhhhhhhhh
Q 000103 1790 LFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFAN--LFTSSILVDAR 1867 (2224)
Q Consensus 1790 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~--~~~~~~~~~~~ 1867 (2224)
|..+... .+.....+ + ...+...++.+.. ..+.++|..++.+++.+...... .....+.
T Consensus 365 L~~l~~~------~~~~~~~~-~-------~~~~l~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~---- 425 (530)
T 1wa5_B 365 ISNITAG------NTEQIQAV-I-------DANLIPPLVKLLE-VAEYKTKKEACWAISNASSGGLQRPDIIRYLV---- 425 (530)
T ss_dssp HHHHTTS------CHHHHHHH-H-------HTTCHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHH----
T ss_pred HHHHHcC------CHHHHHHH-H-------HCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHH----
Confidence 5543220 00000000 0 0012444666554 35677888888777774332110 0000100
Q ss_pred hhhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCC
Q 000103 1868 KKTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFE 1947 (2224)
Q Consensus 1868 ~~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 1947 (2224)
+. ..+..+++++.. ...++|.+|+.+|..- +...+... ..+. .
T Consensus 426 -------------~~----~~l~~L~~ll~~-----~~~~v~~~al~aL~~l--~~~~~~~~--~~~~---~-------- 468 (530)
T 1wa5_B 426 -------------SQ----GCIKPLCDLLEI-----ADNRIIEVTLDALENI--LKMGEADK--EARG---L-------- 468 (530)
T ss_dssp -------------HT----TCHHHHHHHTTT-----CCHHHHHHHHHHHHHH--HHHHHHHH--HHHT---C--------
T ss_pred -------------HC----CCHHHHHHHHhC-----CCHHHHHHHHHHHHHH--HHhhhhhh--hccc---c--------
Confidence 00 134566666542 2468999999999764 22211100 0000 0
Q ss_pred cccccchhhHHHH--HHHHHHHHhhcccCHHHHHHHHHHHHhhhhc
Q 000103 1948 PQEAGNMYAHQVL--VIWFTCIKLLEDEDDGIRQRLAIDVQKCFSL 1991 (2224)
Q Consensus 1948 ~~~~~~~~~~~~l--~~W~~~~~LLeDeD~~iR~~~a~~v~~~~~~ 1991 (2224)
..+.|...+. ...-.+..|++|++..||..+..++.+++..
T Consensus 469 ---~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 469 ---NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp ---SSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred ---cccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 0122333332 2466788999999999999999999999853
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.49 E-value=15 Score=46.09 Aligned_cols=209 Identities=10% Similarity=0.075 Sum_probs=114.5
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhH
Q 000103 1710 GLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRL 1789 (2224)
Q Consensus 1710 ~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~i 1789 (2224)
++.+.|+.+|.++..+||..++..|-......... .+.....++=+.|+.+|..+.++.....+...
T Consensus 286 g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 286 GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQ-------------TQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-------------HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHH-------------HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 45567899999999999999999998775311110 11122234455677777665577777777766
Q ss_pred HhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 000103 1790 LFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKK 1869 (2224)
Q Consensus 1790 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1869 (2224)
|..+... .+.....+... .+...++.+.... +.++|+.++.+++.+...-.......+. +
T Consensus 353 L~nl~~~------~~~~~~~~~~~--------~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~---- 412 (528)
T 4b8j_A 353 ISNITAG------NKDQIQAVINA--------GIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLV-S---- 412 (528)
T ss_dssp HHHHHTS------CHHHHHHHHHT--------TCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHH-H----
T ss_pred HHHHHCC------CHHHHHHHHHC--------CCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHH-H----
Confidence 6543220 00100000000 1123455665544 6778888887777643320000001100 0
Q ss_pred hccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcc
Q 000103 1870 TIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQ 1949 (2224)
Q Consensus 1870 ~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 (2224)
...+..+++++.. ...++|..|+++|... +...+... -.. .
T Consensus 413 ----------------~~~i~~L~~lL~~-----~d~~v~~~al~~L~~l--~~~~~~~~--~~~---~----------- 453 (528)
T 4b8j_A 413 ----------------EGCIKPLCDLLIC-----PDIRIVTVCLEGLENI--LKVGETDK--TLA---A----------- 453 (528)
T ss_dssp ----------------TTCHHHHHHGGGC-----SCHHHHHHHHHHHHHH--HHHHHHHH--HHH---T-----------
T ss_pred ----------------CCCHHHHHHHHcC-----CCHHHHHHHHHHHHHH--HHHHHHhh--hcc---c-----------
Confidence 0134667776653 2358899999998774 11111000 000 0
Q ss_pred cccchhhHHHH--HHHHHHHHhhcccCHHHHHHHHHHHHhhhh
Q 000103 1950 EAGNMYAHQVL--VIWFTCIKLLEDEDDGIRQRLAIDVQKCFS 1990 (2224)
Q Consensus 1950 ~~~~~~~~~~l--~~W~~~~~LLeDeD~~iR~~~a~~v~~~~~ 1990 (2224)
...+.|...+- ..+-.+..|+.++++.|+.++..++.+.+.
T Consensus 454 ~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 454 GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp CSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred ccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 00122333332 235567788999999999999999999884
No 11
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=92.88 E-value=1.7 Score=47.48 Aligned_cols=61 Identities=20% Similarity=0.135 Sum_probs=42.4
Q ss_pred hhhhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHH
Q 000103 1708 FSGLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVL 1787 (2224)
Q Consensus 1708 ~~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l 1787 (2224)
.....+.++.+|.|+.++||..++++|-+.-. ...-+.++++| .++++..+..++
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------------------~~~~~~L~~~l-~~~~~~vr~~a~ 66 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------------------ERAVEPLIKAL-KDEDAWVRRAAA 66 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------------------GGGHHHHHHHT-TCSSHHHHHHHH
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------------------hhHHHHHHHHH-cCCCHHHHHHHH
Confidence 34556778999999999999999999987621 01123344555 466777777777
Q ss_pred hHHhcc
Q 000103 1788 RLLFTW 1793 (2224)
Q Consensus 1788 ~il~~~ 1793 (2224)
+.|...
T Consensus 67 ~~L~~~ 72 (201)
T 3ltj_A 67 DALGQI 72 (201)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776543
No 12
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=92.47 E-value=1.5 Score=50.61 Aligned_cols=94 Identities=15% Similarity=0.036 Sum_probs=61.6
Q ss_pred HHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHhc
Q 000103 1713 ERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLFT 1792 (2224)
Q Consensus 1713 ~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~~ 1792 (2224)
+.|+..|.|+..+||..+.+.|-+.-. ...-+.+++++ ..+++.....+...|..
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~~------------------------~~~~~~L~~~l-~d~~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRGG------------------------QDAVRLAIEFC-SDKNYIRRDIGAFILGQ 80 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC------------------------HHHHHHHHHHH-TCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC------------------------chHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 457888999999999999999987720 11223344544 45677777777777654
Q ss_pred cchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHH
Q 000103 1793 WNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICI 1851 (2224)
Q Consensus 1793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~ 1851 (2224)
+... + .....+...+.+....+.++.+|..++.++|...
T Consensus 81 l~~~-------~-------------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~ 119 (280)
T 1oyz_A 81 IKIC-------K-------------KCEDNVFNILNNMALNDKSACVRATAIESTAQRC 119 (280)
T ss_dssp SCCC-------T-------------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred hccc-------c-------------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 4320 0 1123344455555667788889999999988844
No 13
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.74 E-value=2.9 Score=46.01 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=39.9
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhH
Q 000103 1710 GLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRL 1789 (2224)
Q Consensus 1710 ~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~i 1789 (2224)
+..+.|+..|.|+..+||..+++.|-+.-. ...-+.++++|. .+++.....+++.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------------------~~~~~~L~~~l~-~~~~~vr~~a~~a 73 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------------------ERAVEPLIKALK-DEDAWVRRAAADA 73 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------------------GGGHHHHHHHTT-CSCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------------------ccHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 344567888999999999999999987721 012234445444 4577777777776
Q ss_pred Hhcc
Q 000103 1790 LFTW 1793 (2224)
Q Consensus 1790 l~~~ 1793 (2224)
|..+
T Consensus 74 L~~~ 77 (211)
T 3ltm_A 74 LGQI 77 (211)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6543
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=91.18 E-value=50 Score=43.72 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=27.7
Q ss_pred ccHHHHHHHhCCCChHHHHHHHHHhhccCCCC
Q 000103 1482 LFMPFIRRCSTQSNLKVRVLASRALTGLVPNE 1513 (2224)
Q Consensus 1482 ~F~p~I~rcl~s~~~~VRelAARALasLv~~~ 1513 (2224)
.++|++...+.+++|++|+.|..++..+....
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~ 400 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGP 400 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC
Confidence 47788888899999999999999999988543
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=90.01 E-value=80 Score=44.20 Aligned_cols=152 Identities=12% Similarity=0.059 Sum_probs=95.9
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000103 697 WLVLALTHADELLRVDAAESLFLNPKTASLPSHLELTLMKEAVPLNMRSCSTAFQMKWTSLFRKFFSRVRTALERQFKQG 776 (2224)
Q Consensus 697 ~L~~aL~H~d~~VRi~ALeLL~~SpKtT~ppS~~EL~LIk~fL~~nl~~~s~~~Rq~~~SllKkfl~RlR~s~~r~~k~~ 776 (2224)
.|-.+|.+.+..+|-.|...|..--+. .++..+.-|...+...+.++++..|......++++..-+-. .
T Consensus 52 ~Ll~~L~d~~~~vR~~A~~~L~~l~~~---~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~--------~ 120 (1230)
T 1u6g_C 52 MILKLLEDKNGEVQNLAVKCLGPLVSK---VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP--------A 120 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHTT---SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC--------c
Confidence 366778899999999998877552221 23356666777776668888888898887777666543210 0
Q ss_pred CCCCccccCCCcccccCCchhhHHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhHHHHHHHHHHHcCCCCCCCcccccc
Q 000103 777 SWRPVVSCENSDRTLINGTDTVISKAENLFKFMRWLSCFLFFSCYPSAPYKRKIMAMELILTMMNIWSIAPPQEKLDSVS 856 (2224)
Q Consensus 777 ~~~~~~~~~ek~~~~~~~~e~~~~~le~~~~Fl~WL~~fL~~sL~PgAsYqRki~ALklL~~Lle~fg~d~~~~k~~~~~ 856 (2224)
. . .. .. ......+.+..+.+.+.+ ......+..|+++|.-+++.+|- .
T Consensus 121 ~----~-~~----------~~---~~~~~~~llp~L~~~l~~----~~~~~~~~~al~~l~~~~~~~~~----~------ 168 (1230)
T 1u6g_C 121 S----S-GS----------AL---AANVCKKITGRLTSAIAK----QEDVSVQLEALDIMADMLSRQGG----L------ 168 (1230)
T ss_dssp --------C----------CT---HHHHHHHHHHHHHHHHSC----CSCHHHHHHHHHHHHHHHHHTCS----S------
T ss_pred c----c-cc----------ch---HHHHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHHHHHhHh----H------
Confidence 0 0 00 00 011234455555554432 23567888999999999987542 0
Q ss_pred cccccccCccCCCCcchHHHHHhhhcCcHHHHHHHHHHHHHhCC
Q 000103 857 LESSLYPYNKGITAPNSTLLLVGSIIDSWDRLRESSFRILLHFP 900 (2224)
Q Consensus 857 ~~~~~~pf~~~i~~~~~~~lLld~L~DsyddVRe~A~~LL~~fP 900 (2224)
.-|| .+.....|+..|.|+=..||..|...|..+-
T Consensus 169 ----l~~~-----~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 169 ----LVNF-----HPSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp ----CTTT-----HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred ----HHHH-----HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1232 2445667888888887899999999997743
No 16
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=89.55 E-value=55 Score=42.23 Aligned_cols=65 Identities=12% Similarity=0.049 Sum_probs=45.8
Q ss_pred cHHHHHHHhCCCChHHHHHHHHHhhccCCCCChHHHHHHHHHHhhhhcccCCcCccccccCCCCCChhHhHHHHHHHHHH
Q 000103 1483 FMPFIRRCSTQSNLKVRVLASRALTGLVPNEKLPDVLLNIASELLCVEGQNEAAPVSSLRGTHRASFNLIHGILLQLGSL 1562 (2224)
Q Consensus 1483 F~p~I~rcl~s~~~~VRelAARALasLv~~~~i~~~i~~Ll~~L~~~~~~~~~~~~~~~~~~~~~s~N~lHG~LLqi~~L 1562 (2224)
..+.+.+-+++++-.||.+|.|+++.+..++-....+..+..-+ ...+..--....+++..+
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L------------------~d~~~~VRk~A~~al~~i 148 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL------------------KDEDPYVRKTAAVCVAKL 148 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHS------------------SCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc------------------CCCChHHHHHHHHHHHHH
Confidence 45667778889999999999999999975554433333344333 234567778888888888
Q ss_pred HHh
Q 000103 1563 LDA 1565 (2224)
Q Consensus 1563 L~~ 1565 (2224)
.+.
T Consensus 149 ~~~ 151 (591)
T 2vgl_B 149 HDI 151 (591)
T ss_dssp HHS
T ss_pred Hhh
Confidence 764
No 17
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=87.64 E-value=7.6 Score=43.95 Aligned_cols=187 Identities=11% Similarity=0.108 Sum_probs=106.7
Q ss_pred cHHHHHHHhCCCChHHHHHHHHHhhccCCC------CChHHHHHHHHHHhhhhcccCCcCccccccCCCCCChhHhHHHH
Q 000103 1483 FMPFIRRCSTQSNLKVRVLASRALTGLVPN------EKLPDVLLNIASELLCVEGQNEAAPVSSLRGTHRASFNLIHGIL 1556 (2224)
Q Consensus 1483 F~p~I~rcl~s~~~~VRelAARALasLv~~------~~i~~~i~~Ll~~L~~~~~~~~~~~~~~~~~~~~~s~N~lHG~L 1556 (2224)
+-|.+.+.+.+++|+.|..|+.+|..++.. .++...+..+...+. ...+.+-..+.+
T Consensus 16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~-----------------kd~~~~V~~~a~ 78 (242)
T 2qk2_A 16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVIT-----------------KDSNVVLVAMAG 78 (242)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHH-----------------HCSCHHHHHHHH
T ss_pred CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhc-----------------cCCCHHHHHHHH
Confidence 445577788999999999999999888753 233333333333331 124667788999
Q ss_pred HHHHHHHHhhccccCcchhhhhhHHHHHHHHhhhccccCCCCCCcHHHHHHHHHHHHHHHHHHHhhccCcchhhHHHHHH
Q 000103 1557 LQLGSLLDANCRNLVDFSKKDQILGDLIKVLGNCSWIANPKRCPCPILNASFLKVLDHMLSIARACHTSKSFSTVRNLLL 1636 (2224)
Q Consensus 1557 Lqi~~LL~~~~~~~~d~~~~~~~~~~l~~~l~~~~wl~~~~~~~Cpv~~a~yL~Vl~~ll~~~~~~~~~~~~~~i~~~l~ 1636 (2224)
-++..+.+..-. .+ ......++..+.. -+.+ +-+.++.+-.+.+..+... -+++ ..+.
T Consensus 79 ~~l~~la~~l~~---~~---~~~~~~ilp~ll~--~l~d----~~~~vr~~a~~aL~~~~~~-------~~~~---~ll~ 136 (242)
T 2qk2_A 79 KCLALLAKGLAK---RF---SNYASACVPSLLE--KFKE----KKPNVVTALREAIDAIYAS-------TSLE---AQQE 136 (242)
T ss_dssp HHHHHHHHHHGG---GG---HHHHHHHHHHHHH--GGGC----CCHHHHHHHHHHHHHHHTT-------SCHH---HHHH
T ss_pred HHHHHHHHHHhh---hH---HHHHHHHHHHHHH--HHcC----CCHHHHHHHHHHHHHHHHc-------CCHH---HHHH
Confidence 999888865321 11 1222333333321 1222 3367887777777776432 1222 2333
Q ss_pred HHhhhhccccccCCCccCCCCHHHHHHHHHhhhhhccccccccchhhhhccCcccCCCCCccccCCCCCcchhhhHHHHH
Q 000103 1637 ELSTDCLDVDASYGLTYYDPTITELRKKAANSYFSCVFQASEESGEEVLQMPQRCSPVDSTLSKIPDMENTFSGLLERLV 1716 (2224)
Q Consensus 1637 ~l~~~~l~~~~~~~~~~~~p~~~~l~~~aa~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 1716 (2224)
.+... +... . .+.+..+ ..+++.++.... +.. .....+..+.+.|.
T Consensus 137 ~l~~~-l~~~--------~---~~vr~~~-l~~l~~~l~~~~---------------~~~------~~~~~l~~l~p~l~ 182 (242)
T 2qk2_A 137 SIVES-LSNK--------N---PSVKSET-ALFIARALTRTQ---------------PTA------LNKKLLKLLTTSLV 182 (242)
T ss_dssp HHHHH-TTCS--------C---HHHHHHH-HHHHHHHHTTCC---------------GGG------CCHHHHHHHHHHHH
T ss_pred HHHHH-HcCC--------C---hHHHHHH-HHHHHHHHHHcC---------------CCC------ccHHHHHHHHHHHH
Confidence 33332 2211 1 2334444 556655543110 000 01124567888899
Q ss_pred hhcCCchhHhHHHHHHHHHHhhhccC
Q 000103 1717 RSLSDSSYEVRLSTLKWLLKFLKSTE 1742 (2224)
Q Consensus 1717 ~~L~~~~yevR~~tlk~ll~~~~s~~ 1742 (2224)
.+|.|+.++||.+|.+.|-...+..+
T Consensus 183 ~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 183 KTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999988765443
No 18
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=86.88 E-value=39 Score=43.99 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=63.6
Q ss_pred HHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHh
Q 000103 1712 LERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLF 1791 (2224)
Q Consensus 1712 ~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~ 1791 (2224)
.+.|..+|+++..++|..+|.+|.+..... + . .....+..++..+ .++++.-++++|.+|+
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~-p------------~-----~~~~~~~~i~~~l-~d~d~~Ir~~alelL~ 375 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTD-H------------N-----AVQRHRSTIVDCL-KDLDVSIKRRAMELSF 375 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHH-H------------H-----HHGGGHHHHHHGG-GSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhC-H------------H-----HHHHHHHHHHHHc-cCCChhHHHHHHHHHH
Confidence 345666788888899999999988875311 0 0 1122344555555 4677889999999987
Q ss_pred ccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHH
Q 000103 1792 TWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRF 1854 (2224)
Q Consensus 1792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~ 1854 (2224)
.+--. .+ ...+=+.++.... +.+...|..++..+|.|..+|
T Consensus 376 ~l~~~-------~n--------------v~~iv~eL~~~l~-~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 376 ALVNG-------NN--------------IRGMMKELLYFLD-SCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp HHCCS-------SS--------------THHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHSS
T ss_pred HHccc-------cc--------------HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHh
Confidence 55321 00 0111133343333 355668899999999998875
No 19
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=86.80 E-value=35 Score=44.43 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=37.2
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCccccHHHHHHHhCCCChHHHHHHHHHhhccCC
Q 000103 1456 CPMLILLCRLKPSALAGESGDDLDPFLFMPFIRRCSTQSNLKVRVLASRALTGLVP 1511 (2224)
Q Consensus 1456 fPiL~LLSRL~Ps~~~~~~~d~L~~~~F~p~I~rcl~s~~~~VRelAARALasLv~ 1511 (2224)
..+|..|+++..+.+. ..+.|.|.+|+.+++-.||.-|+.|+..+..
T Consensus 125 ~lAL~~L~~i~~~~~~---------~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~ 171 (618)
T 1w63_A 125 GLALCTLGCMGSSEMC---------RDLAGEVEKLLKTSNSYLRKKAALCAVHVIR 171 (618)
T ss_dssp HHHHHHHHHHCCHHHH---------HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHH---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4678888888754221 2468999999999999999999999987753
No 20
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=84.06 E-value=30 Score=37.50 Aligned_cols=195 Identities=13% Similarity=0.089 Sum_probs=106.9
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhH
Q 000103 1710 GLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRL 1789 (2224)
Q Consensus 1710 ~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~i 1789 (2224)
...+.|..+|.++..++|..++..|-......... .......+.=+.++++|..+ ++.....++..
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~ 77 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQ-------------IQAVIDAGALPALVQLLSSP-NEQILQEALWA 77 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-------------HHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHH-------------HHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHH
Confidence 33445788899999999999999998875322111 11222233445566766554 78888888888
Q ss_pred HhccchhhhhhcCCCcccccc-ccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000103 1790 LFTWNLLQFQKLGSNVCTETI-FVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARK 1868 (2224)
Q Consensus 1790 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 1868 (2224)
|...-.. .++....+ ..| ....++.+-... ++.+|+.+..+++.+.. . ..+.
T Consensus 78 L~~l~~~------~~~~~~~i~~~g---------~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~--------~-~~~~-- 130 (210)
T 4db6_A 78 LSNIASG------GNEQIQAVIDAG---------ALPALVQLLSSP-NEQILQEALWALSNIAS--------G-GNEQ-- 130 (210)
T ss_dssp HHHHTTS------CHHHHHHHHHTT---------CHHHHHHHTTCS-CHHHHHHHHHHHHHHTT--------S-CHHH--
T ss_pred HHHHhcC------CcHHHHHHHHCC---------CHHHHHHHHcCC-cHHHHHHHHHHHHHHHc--------C-CHHH--
Confidence 7654321 00000000 001 133455555444 56677777766665221 0 0000
Q ss_pred hhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCc
Q 000103 1869 KTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEP 1948 (2224)
Q Consensus 1869 ~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 1948 (2224)
.... ++ ...+..+++++.. ...++|..|+.+|.... .- ++
T Consensus 131 -~~~~-----~~-----~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~-----~~------~~------------- 170 (210)
T 4db6_A 131 -IQAV-----ID-----AGALPALVQLLSS-----PNEQILQEALWALSNIA-----SG------GN------------- 170 (210)
T ss_dssp -HHHH-----HH-----TTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHH-----TS------CH-------------
T ss_pred -HHHH-----HH-----cCcHHHHHHHHcC-----CCHHHHHHHHHHHHHHH-----cC------Cc-------------
Confidence 0000 00 0135666666653 24689999999987741 10 00
Q ss_pred ccccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhh
Q 000103 1949 QEAGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKC 1988 (2224)
Q Consensus 1949 ~~~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~ 1988 (2224)
+..... .-....-.++++|+++|..||..++.++...
T Consensus 171 -~~~~~~--~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 171 -EQKQAV--KEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp -HHHHHH--HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred -HHHHHH--HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 000000 0012455688999999999999999888765
No 21
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=82.80 E-value=19 Score=40.63 Aligned_cols=209 Identities=14% Similarity=0.154 Sum_probs=129.5
Q ss_pred hhhhHhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCcchhhhhhhccccCCHHHHHHHHHHHHHHHHhccccch
Q 000103 1118 VMVGCWLAMKEVSLLLGTIIRKIPLPINSSSDTVDSGSGTSDAADDLLMTMSDAMLDLKQLEKIGSHFLEVLLKMKHNGA 1197 (2224)
Q Consensus 1118 ILs~~WRamKEsSlLLgtLi~~~pL~~~~~~~~~~~~~~~~~~~~~~~~~~s~~lls~eqi~~IG~~~~~~Ll~~RHRGA 1197 (2224)
+-+-.|+.=|++..-|+.++...|- . .. ..+.++...+...|.+=.|--+
T Consensus 24 l~s~~w~~R~~a~~~L~~l~~~~~~-~----------------------------~~-~~~~~i~~~L~~~l~kd~~~~V 73 (242)
T 2qk2_A 24 LEEKKWTLRKESLEVLEKLLTDHPK-L----------------------------EN-GEYGALVSALKKVITKDSNVVL 73 (242)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCSS-B----------------------------CC-CCCHHHHHHHHHHHHHCSCHHH
T ss_pred hccCCHHHHHHHHHHHHHHHccCCC-C----------------------------CC-CCHHHHHHHHHHHhccCCCHHH
Confidence 3455799999999999999986330 0 00 1234566667777654567778
Q ss_pred hhhhHHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHHHhhccccchhhhhccCChhHHHHHHHhcCCCCCCCCcHHHHHH
Q 000103 1198 IDKTRAGFTALCNRLLCSNDLRLCRLTESWMEQLMERTVAKGQIVDDLLRRSAGIPAAFIALFLAEPEGAPKKLLPQALR 1277 (2224)
Q Consensus 1198 fe~v~~~F~~lC~rL~~s~~~~L~~LP~~WL~~lL~~i~~~~qsv~~lTRRSAGLP~li~aIL~aEp~~~~~~LL~~~m~ 1277 (2224)
...+..++..+|..+.. .+...-...+..+++.+..+.+ .+|..|.- ++.+++... -++..|.
T Consensus 74 ~~~a~~~l~~la~~l~~----~~~~~~~~ilp~ll~~l~d~~~----~vr~~a~~--aL~~~~~~~-------~~~~ll~ 136 (242)
T 2qk2_A 74 VAMAGKCLALLAKGLAK----RFSNYASACVPSLLEKFKEKKP----NVVTALRE--AIDAIYAST-------SLEAQQE 136 (242)
T ss_dssp HHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHHGGGCCCH----HHHHHHHH--HHHHHHTTS-------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHcCCCH----HHHHHHHH--HHHHHHHcC-------CHHHHHH
Confidence 88888999999987642 3344445566666666543322 35654432 333444321 1455565
Q ss_pred HHHHHHhhhhhhhhhhcccccccccccCCccccccCCCCCccccccCccccCCCCcchHHHHHHHHHHHcCCCcchhhHH
Q 000103 1278 WLIDVANRSLLDLIENKGAKTTMCEFSHSNQETESAVPPDIYATWNSSKIRDEGVVPTVHAFNILRAAFNDTNLAADTSA 1357 (2224)
Q Consensus 1278 ~Ll~iA~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~~~~~~~~~e~~s~~~de~~lPqVHALNiLRaIF~Ds~Ls~~~~~ 1357 (2224)
.|+..-+. ...-.+..++..|..++....-.....+
T Consensus 137 ~l~~~l~~--------------------------------------------~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 137 SIVESLSN--------------------------------------------KNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHHHHTTC--------------------------------------------SCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHcC--------------------------------------------CChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 55553221 1113577889999887766432234567
Q ss_pred hHHHHHHHHHhccCCCchhhhchHHHHHHHHHHHHhccccCCchhhhhhccchhhhhhcCCChHHHHHHHHHHHHh
Q 000103 1358 FSAEALIISIRSFSSPYWEIRNSACLAYTALIRRMLGFLNVQKRESARRALTGLEFFHRYPSLHPFIFNELRVITE 1433 (2224)
Q Consensus 1358 Yi~~aL~lAi~~F~S~~WaIRNsAlMLFsALi~RifG~~~~~~~~s~r~~~t~~eFF~RYP~L~~fLl~~L~~a~~ 1433 (2224)
|+...+..-...+.++.|.||.+|.-.++.+. +.+|.. .|-.-.|.|.+.-.+.++...+
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~-~~vg~~---------------~~~~~l~~L~~~~~~~i~~~~~ 232 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI-KLMGDK---------------AVTPLLADVDPLKMAKIKECQE 232 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH-HHHCHH---------------HHGGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HHcCHH---------------HHHHHHHhcCHHHHHHHHHHHH
Confidence 88888888888899999999999999998887 455521 1222235566666666665543
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=82.45 E-value=23 Score=39.59 Aligned_cols=196 Identities=13% Similarity=0.040 Sum_probs=110.8
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhH
Q 000103 1710 GLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRL 1789 (2224)
Q Consensus 1710 ~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~i 1789 (2224)
+..+.|+.+|.++..++|..++..|-......... .......+.=+.++++|.. .+++....++..
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~ 119 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-------------IQAVIDAGALPALVQLLSS-PNEQILQEALWA 119 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH-------------HHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-------------HHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHH
Confidence 45567889999989999999999998875421111 0111222344556666665 578888888888
Q ss_pred HhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 000103 1790 LFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKK 1869 (2224)
Q Consensus 1790 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1869 (2224)
|...... +... ...+. .......++.+.... ++.+|+.++.+++.+...-.. .
T Consensus 120 L~~l~~~-------~~~~-~~~~~------~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~---------~--- 172 (252)
T 4db8_A 120 LSNIASG-------GNEQ-IQAVI------DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNE---------Q--- 172 (252)
T ss_dssp HHHHTTS-------CHHH-HHHHH------HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHH---------H---
T ss_pred HHHhhcC-------CchH-HHHHH------HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChH---------H---
Confidence 7654331 0000 00000 011345567666544 667888888777763220000 0
Q ss_pred hccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcc
Q 000103 1870 TIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQ 1949 (2224)
Q Consensus 1870 ~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 (2224)
... +-+ ...+...++++.. ...++|..|+.+|..-. . .++
T Consensus 173 ~~~------~~~----~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~-----~------~~~-------------- 212 (252)
T 4db8_A 173 IQA------VID----AGALPALVQLLSS-----PNEQILQEALWALSNIA-----S------GGN-------------- 212 (252)
T ss_dssp HHH------HHH----TTCHHHHHHGGGC-----SSHHHHHHHHHHHHHHT-----T------SCH--------------
T ss_pred HHH------HHH----CCCHHHHHHHHCC-----CCHHHHHHHHHHHHHHh-----c------CCH--------------
Confidence 000 000 0124566666652 26789999999998741 0 000
Q ss_pred cccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhh
Q 000103 1950 EAGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKC 1988 (2224)
Q Consensus 1950 ~~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~ 1988 (2224)
+....+. --...-.++.+|+++|..+|..++.++..+
T Consensus 213 ~~~~~~~--~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 213 EQKQAVK--EAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHH--HTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHH--HCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 0000000 012456788999999999999999888765
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=82.12 E-value=27 Score=42.34 Aligned_cols=120 Identities=10% Similarity=0.162 Sum_probs=72.3
Q ss_pred hhhHHHHHhhcCCc--hhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcC-CcchHHH
Q 000103 1709 SGLLERLVRSLSDS--SYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEK-NPRCTNY 1785 (2224)
Q Consensus 1709 ~~l~~~l~~~L~~~--~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~-~~~C~~~ 1785 (2224)
.++.+.|..++.+. ..++|..+++.|-+.++...+.. +... ...+-+.++..+..++ ++..+..
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~------------~~~~-~~~ll~~l~~~l~~~~~~~~vr~~ 193 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ------------LQDK-SNEILTAIIQGMRKEEPSNNVKLA 193 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG------------TGGG-HHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh------------hHhH-HHHHHHHHHHHhCCCCCCHHHHHH
Confidence 46777788888887 89999999999998876443210 1111 1235556667676664 7888888
Q ss_pred HHhHHhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHh---hhhchhhHhHHHHHHHHHHHHHHHHHHH
Q 000103 1786 VLRLLFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSS---YELTRHAKIKESLINCMAICIRRFANLF 1858 (2224)
Q Consensus 1786 ~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~---~~~~~~~~~r~~~i~~~~~~~~~~~~~~ 1858 (2224)
+++.+..|-.. ++. .. + + ..+++.++.. ...+.++.+|..++.|++.+..++...+
T Consensus 194 a~~~l~~~~~~-~~~--------~~-----~-~--~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 252 (462)
T 1ibr_B 194 ATNALLNSLEF-TKA--------NF-----D-K--ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM 252 (462)
T ss_dssp HHHHHHHHTTT-THH--------HH-----T-S--HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHH-HHH--------hh-----h-h--hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988764210 000 00 0 0 0112211211 2344677889999999988777655443
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=80.33 E-value=15 Score=42.48 Aligned_cols=198 Identities=11% Similarity=0.142 Sum_probs=129.3
Q ss_pred ccchhhhHhHHHHHHHHHHHH-HHHhCCCCCCCCCCCCCCCCCCCCcchhhhhhhccccCCHHHHHHHHHHHHHHHHhcc
Q 000103 1115 EQVVMVGCWLAMKEVSLLLGT-IIRKIPLPINSSSDTVDSGSGTSDAADDLLMTMSDAMLDLKQLEKIGSHFLEVLLKMK 1193 (2224)
Q Consensus 1115 ~Q~ILs~~WRamKEsSlLLgt-Li~~~pL~~~~~~~~~~~~~~~~~~~~~~~~~~s~~lls~eqi~~IG~~~~~~Ll~~R 1193 (2224)
.+.+-+-=|.-=||+-.-|+. ++...|--. + +..++..+-+.+...|.+=.
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~----~------------------------~~~~~~~~~~~L~~~l~~D~ 73 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLK----S------------------------TSQNYSNLLGIYGHIIQKDA 73 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBC----C------------------------TTCCCHHHHHHHHHHHHHCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccc----c------------------------CcccHHHHHHHHHHHhccCC
Confidence 345667789999998888888 775422000 0 01122344555666665555
Q ss_pred ccchhhhhHHHHHHHHHHHH-cCCchHHH-HhHHHHHHHHHHHHhhccccchhhhhccCChhHHHHHHHhcCCCCCCCCc
Q 000103 1194 HNGAIDKTRAGFTALCNRLL-CSNDLRLC-RLTESWMEQLMERTVAKGQIVDDLLRRSAGIPAAFIALFLAEPEGAPKKL 1271 (2224)
Q Consensus 1194 HRGAfe~v~~~F~~lC~rL~-~s~~~~L~-~LP~~WL~~lL~~i~~~~qsv~~lTRRSAGLP~li~aIL~aEp~~~~~~L 1271 (2224)
|--+...+..++..+|+.+. .. +. ..-..-+-.+++.+..+.+. .|+.|. .++.+++.+-+.....+.
T Consensus 74 n~~v~~~A~~al~~la~~l~~~~----f~~~y~~~llp~ll~~l~dkk~~----V~~aa~--~al~~i~~~~~~~~~~~~ 143 (249)
T 2qk1_A 74 NIQAVALAAQSVELICDKLKTPG----FSKDYVSLVFTPLLDRTKEKKPS----VIEAIR--KALLTICKYYDPLASSGR 143 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTT----SCHHHHHHHHHHHHHGGGCCCHH----HHHHHH--HHHHHHHHHSCTTCTTCT
T ss_pred CHHHHHHHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHHHcCCCHH----HHHHHH--HHHHHHHHHccccccCCc
Confidence 65566777888888887663 22 22 23334556677766544433 455554 456667664322233334
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccccccCCCCCccccccCccccCCCCcchHHHHHHHHHHHcCCCc
Q 000103 1272 LPQALRWLIDVANRSLLDLIENKGAKTTMCEFSHSNQETESAVPPDIYATWNSSKIRDEGVVPTVHAFNILRAAFNDTNL 1351 (2224)
Q Consensus 1272 L~~~m~~Ll~iA~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~~~~~~~~~e~~s~~~de~~lPqVHALNiLRaIF~Ds~L 1351 (2224)
++.+|+.|+..-+.+ ..-.+.-++++|..++..+.-
T Consensus 144 l~~ll~~l~~~l~~k--------------------------------------------~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 144 NEDMLKDILEHMKHK--------------------------------------------TPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp THHHHHHHHHHTTCS--------------------------------------------SHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCC--------------------------------------------ChHHHHHHHHHHHHHHHHcCC
Confidence 888999888765432 001467799999999988765
Q ss_pred c-hhhHHhH-HHHHHHHHhccCCCchhhhchHHHHHHHHHHHHhcc
Q 000103 1352 A-ADTSAFS-AEALIISIRSFSSPYWEIRNSACLAYTALIRRMLGF 1395 (2224)
Q Consensus 1352 s-~~~~~Yi-~~aL~lAi~~F~S~~WaIRNsAlMLFsALi~RifG~ 1395 (2224)
. ....+|+ .+.+-.-.+.+..+.-.||++|.-.++++. +++|.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~-~~vG~ 224 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI-KIFGM 224 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH-HHHCS
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHhCH
Confidence 4 4566888 888888888999999999999999999997 78885
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=78.45 E-value=56 Score=41.15 Aligned_cols=197 Identities=12% Similarity=0.065 Sum_probs=111.6
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHHhhhccC-CchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHh
Q 000103 1710 GLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTE-SDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLR 1788 (2224)
Q Consensus 1710 ~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~ 1788 (2224)
...+.|+..|.+...++|..|++.|.+.+.... +. +......++=+.++++|..+.++.....++.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~-------------~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~ 153 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPP-------------IDVVIQAGVVPRLVEFMRENQPEMLQLEAAW 153 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCS-------------HHHHHHTTCHHHHHHTTSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCcc-------------HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 335668888999899999999999999875322 11 1122334556777888877768887777777
Q ss_pred HHhccchhhhhhcCCCccccccc-cCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 000103 1789 LLFTWNLLQFQKLGSNVCTETIF-VGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDAR 1867 (2224)
Q Consensus 1789 il~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1867 (2224)
+|...-.. .++....+. .+ .-..++.+.. +.++.+|+.++.+++.+...-.. .+.. +
T Consensus 154 ~L~~l~~~------~~~~~~~~~~~g---------~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~-~~~~-----~ 211 (530)
T 1wa5_B 154 ALTNIASG------TSAQTKVVVDAD---------AVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTD-YRDY-----V 211 (530)
T ss_dssp HHHHHTTS------CHHHHHHHHHTT---------CHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHH-HHHH-----H
T ss_pred HHHHHhCC------CHHHHHHHHHCC---------CHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCcc-chHH-----H
Confidence 77543321 001100000 01 0122344443 35677888888887773321000 0000 0
Q ss_pred hhhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCC
Q 000103 1868 KKTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFE 1947 (2224)
Q Consensus 1868 ~~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 1947 (2224)
+. ...+...++++.. ...++|..|+.+|..- .. +. .|.
T Consensus 212 -----------~~-----~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~L-----~~-------~~-~~~-------- 249 (530)
T 1wa5_B 212 -----------LQ-----CNAMEPILGLFNS-----NKPSLIRTATWTLSNL-----CR-------GK-KPQ-------- 249 (530)
T ss_dssp -----------HH-----TTCHHHHHHGGGS-----CCHHHHHHHHHHHHHH-----HC-------CS-SSC--------
T ss_pred -----------HH-----cCcHHHHHHHhcc-----CCHHHHHHHHHHHHHH-----hC-------CC-CCC--------
Confidence 00 0123555566543 4578999999988763 11 00 000
Q ss_pred cccccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhhh
Q 000103 1948 PQEAGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKCF 1989 (2224)
Q Consensus 1948 ~~~~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~ 1989 (2224)
... ...-.+.-.++.+|.|+|..||..++..+..+.
T Consensus 250 ----~~~--~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 250 ----PDW--SVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp ----CCH--HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred ----CcH--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 000 111234567889999999999999988887664
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=76.62 E-value=77 Score=38.28 Aligned_cols=195 Identities=9% Similarity=0.002 Sum_probs=107.4
Q ss_pred hHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHH
Q 000103 1711 LLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLL 1790 (2224)
Q Consensus 1711 l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il 1790 (2224)
+.+.|+.+|.++..+||..++..|-......... -......+.-+.+++++..++++.....++..|
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~-------------~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L 174 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC-------------RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL 174 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-------------HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHH-------------HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4556888899999999999999998775321100 011122344566777777677888888888777
Q ss_pred hccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 000103 1791 FTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKKT 1870 (2224)
Q Consensus 1791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 1870 (2224)
...-.. ..+...... .......++.+... .++.+|+.+..+++.+...-. +..
T Consensus 175 ~~l~~~-----~~~~~~~~~---------~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~---------~~~--- 227 (450)
T 2jdq_A 175 SNLCRG-----KSPPPEFAK---------VSPCLNVLSWLLFV-SDTDVLADACWALSYLSDGPN---------DKI--- 227 (450)
T ss_dssp HHHHCC-----SSSCCCGGG---------TGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSSH---------HHH---
T ss_pred HHHhCC-----CCCCCCHHH---------HHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHCCCc---------HHH---
Confidence 643321 001110000 01122335555443 345566666655555221000 000
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCccc
Q 000103 1871 IEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQE 1950 (2224)
Q Consensus 1871 ~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1950 (2224)
.. +-. ...+...++++. +...++|.+|+.+|..-. . + .
T Consensus 228 ~~------~~~----~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~-----~-------~------~--------- 265 (450)
T 2jdq_A 228 QA------VID----AGVCRRLVELLM-----HNDYKVVSPALRAVGNIV-----T-------G------D--------- 265 (450)
T ss_dssp HH------HHH----TTTHHHHHHHTT-----CSCHHHHHHHHHHHHHHT-----T-------S------C---------
T ss_pred HH------HHH----cCcHHHHHHHHC-----CCchhHHHHHHHHHHHHh-----h-------C------C---------
Confidence 00 000 013455666664 234689999999987641 0 0 0
Q ss_pred ccchhhHHHH--HHHHHHHHhhcccCHHHHHHHHHHHHhhh
Q 000103 1951 AGNMYAHQVL--VIWFTCIKLLEDEDDGIRQRLAIDVQKCF 1989 (2224)
Q Consensus 1951 ~~~~~~~~~l--~~W~~~~~LLeDeD~~iR~~~a~~v~~~~ 1989 (2224)
+...+.++ .+.-.++.+|++++..+|..++.++..+.
T Consensus 266 --~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 266 --DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp --HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred --hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 00001111 24567889999999999999999988764
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=76.19 E-value=1.4e+02 Score=35.94 Aligned_cols=208 Identities=12% Similarity=0.103 Sum_probs=113.1
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhH
Q 000103 1710 GLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRL 1789 (2224)
Q Consensus 1710 ~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~i 1789 (2224)
++.+.|+.+|.++..+||..++..|-......... .+.....++-+.+++++.. +++.-.+.++..
T Consensus 234 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~~~~~~~l~~L~~ll~~-~~~~vr~~a~~~ 299 (450)
T 2jdq_A 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQ-------------TQVILNCSALQSLLHLLSS-PKESIKKEACWT 299 (450)
T ss_dssp TTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-------------HHHHHTTTHHHHHHHHTTC-SSHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHH-------------HHHHHHCccHHHHHHHHcC-CCHHHHHHHHHH
Confidence 45567888999999999999999998875321110 1111122344556666655 567777777777
Q ss_pred HhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 000103 1790 LFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKK 1869 (2224)
Q Consensus 1790 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1869 (2224)
|...-.. .+.....+ . ...+...++.+... .++++|..+..+++.+...........+. +
T Consensus 300 L~~l~~~------~~~~~~~~--~------~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~l~-~---- 359 (450)
T 2jdq_A 300 ISNITAG------NRAQIQTV--I------DANIFPALISILQT-AEFRTRKEAAWAITNATSGGSAEQIKYLV-E---- 359 (450)
T ss_dssp HHHHTTS------CHHHHHHH--H------HTTHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHCCHHHHHHHH-H----
T ss_pred HHHHHcC------CHHHHHHH--H------HCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHcCCCHHHHHHHH-H----
Confidence 7543320 00000000 0 01234445555553 46778888877777644321100000000 0
Q ss_pred hccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcc
Q 000103 1870 TIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQ 1949 (2224)
Q Consensus 1870 ~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 (2224)
...+..+++++.. ...++|.+|+++|..- +...+. .... + .
T Consensus 360 ----------------~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l--~~~~~~---~~~~-----~--~------ 400 (450)
T 2jdq_A 360 ----------------LGCIKPLCDLLTV-----MDSKIVQVALNGLENI--LRLGEQ---EAKR-----N--G------ 400 (450)
T ss_dssp ----------------HTCHHHHHHGGGS-----SCHHHHHHHHHHHHHH--HHHHHH---HHHH-----S--C------
T ss_pred ----------------CCCHHHHHHHhcC-----CCHHHHHHHHHHHHHH--HHhchh---hhhc-----c--c------
Confidence 0134556665542 2468999999999764 111111 0000 0 0
Q ss_pred cccchhhHHH--HHHHHHHHHhhcccCHHHHHHHHHHHHhhhh
Q 000103 1950 EAGNMYAHQV--LVIWFTCIKLLEDEDDGIRQRLAIDVQKCFS 1990 (2224)
Q Consensus 1950 ~~~~~~~~~~--l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~~ 1990 (2224)
...+.|...+ ...+-.+..|+++++..||..+..++.+.|.
T Consensus 401 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 401 TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp SCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 0112233332 2335567889999999999999999999884
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=75.76 E-value=1.7e+02 Score=36.61 Aligned_cols=200 Identities=17% Similarity=0.071 Sum_probs=111.1
Q ss_pred hhhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHh
Q 000103 1709 SGLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLR 1788 (2224)
Q Consensus 1709 ~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~ 1788 (2224)
.++.+.|+.+|.+...+||..++..|........ ..++.....+.=+.++++|... ++.....+++
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-------------~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~ 308 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTN-------------DKIQAVIEAGVCPRLVELLLHP-SPSVLIPALR 308 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-------------HHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-------------HHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHH
Confidence 4566778899999999999999999988753111 1112222234445666666544 5677777777
Q ss_pred HHhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000103 1789 LLFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARK 1868 (2224)
Q Consensus 1789 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 1868 (2224)
+|...-.. .+..... +.. ..+...++.+.....++.+|..+..+++.+... +.+.+
T Consensus 309 ~L~nl~~~------~~~~~~~--~~~------~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~---------~~~~~- 364 (528)
T 4b8j_A 309 TVGNIVTG------DDAQTQC--IID------HQALPCLLSLLTQNLKKSIKKEACWTISNITAG---------NKDQI- 364 (528)
T ss_dssp HHHHHTTS------CHHHHHH--HHT------TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS---------CHHHH-
T ss_pred HHHHHHcC------CHHHHHH--HHH------hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC---------CHHHH-
Confidence 77543321 0000000 000 112344666665554677887777777663320 00000
Q ss_pred hhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCc
Q 000103 1869 KTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEP 1948 (2224)
Q Consensus 1869 ~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 1948 (2224)
... +.. ..+..+++++... ..++|.+|+.+|.....- + ++
T Consensus 365 --~~~-----~~~-----~~i~~L~~lL~~~-----~~~v~~~a~~aL~nl~~~------~----~~------------- 404 (528)
T 4b8j_A 365 --QAV-----INA-----GIIGPLVNLLQTA-----EFDIKKEAAWAISNATSG------G----SH------------- 404 (528)
T ss_dssp --HHH-----HHT-----TCHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHH------S----CH-------------
T ss_pred --HHH-----HHC-----CCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHcC------C----CH-------------
Confidence 000 000 1245666666543 568999999999764110 0 00
Q ss_pred ccccchh-hHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhhhh
Q 000103 1949 QEAGNMY-AHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKCFS 1990 (2224)
Q Consensus 1949 ~~~~~~~-~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~~ 1990 (2224)
+....+ .. ..--.++.||+++|..||..+...+..++.
T Consensus 405 -~~~~~l~~~---~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 405 -DQIKYLVSE---GCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp -HHHHHHHHT---TCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHC---CCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 000000 01 123457789999999999999999988874
No 29
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=73.31 E-value=2.3e+02 Score=37.00 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=69.8
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhH
Q 000103 1710 GLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRL 1789 (2224)
Q Consensus 1710 ~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~i 1789 (2224)
...+.|...|+++..++|..+|.+|.+....... +-.....+..++..|..++++.-++++|.+
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~----------------~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~l 392 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS----------------HEAVKTHIETVINALKTERDVSVRQRAVDL 392 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT----------------HHHHHTTHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc----------------HHHHHHHHHHHHHHhccCCCHhHHHHHHHH
Confidence 3445577778889999999999999999642210 001233466777777668889999999999
Q ss_pred HhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHH
Q 000103 1790 LFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFA 1855 (2224)
Q Consensus 1790 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~ 1855 (2224)
|+.+--. ++...+=+.+.+... ......|..++..+|.|..+|.
T Consensus 393 L~~l~~~---------------------~Nv~~Iv~eL~~yl~-~~d~~~~~~~v~~I~~la~k~~ 436 (621)
T 2vgl_A 393 LYAMCDR---------------------SNAQQIVAEMLSYLE-TADYSIREEIVLKVAILAEKYA 436 (621)
T ss_dssp HHHHCCH---------------------HHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCh---------------------hhHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcC
Confidence 8754321 111222222333332 2344577788889999988874
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=72.98 E-value=71 Score=35.53 Aligned_cols=194 Identities=11% Similarity=0.049 Sum_probs=107.4
Q ss_pred HHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHhc
Q 000103 1713 ERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLFT 1792 (2224)
Q Consensus 1713 ~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~~ 1792 (2224)
+.+...|.+...++|..+.+.|.+.+...... .......+.=+.++++|..+ ++.....++.+|..
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~-------------~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~ 80 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQ-------------IQAVIDAGALPALVQLLSSP-NEQILQEALWALSN 80 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHH-------------HHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCch-------------HHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 34677788999999999999998765421111 11222334445666766654 48888888888764
Q ss_pred cchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 000103 1793 WNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKKTIE 1872 (2224)
Q Consensus 1793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1872 (2224)
.... .++....+ . .......++.+... .++.+|+.++.+++.+...-... ...
T Consensus 81 l~~~------~~~~~~~i--~------~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~------------~~~ 133 (252)
T 4db8_A 81 IASG------GNEQIQAV--I------DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQ------------IQA 133 (252)
T ss_dssp HTTS------CHHHHHHH--H------HTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHH------------HHH
T ss_pred HhcC------CHHHHHHH--H------HcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchH------------HHH
Confidence 4331 01100000 0 00123446666655 45678888887777632100000 000
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCccccc
Q 000103 1873 ISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQEAG 1952 (2224)
Q Consensus 1873 ~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1952 (2224)
.. + ...+...++++.. ...++|.+|+.+|..-. .- + .+..
T Consensus 134 ~~------~----~~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~-----~~------~--------------~~~~ 173 (252)
T 4db8_A 134 VI------D----AGALPALVQLLSS-----PNEQILQEALWALSNIA-----SG------G--------------NEQI 173 (252)
T ss_dssp HH------H----TTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHT-----TS------C--------------HHHH
T ss_pred HH------H----CCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHH-----cC------C--------------hHHH
Confidence 00 0 0134556666632 25689999999987741 10 0 0000
Q ss_pred chhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhhh
Q 000103 1953 NMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKCF 1989 (2224)
Q Consensus 1953 ~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~ 1989 (2224)
.... --..--.++.+|.++|..+|..++.++..+.
T Consensus 174 ~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 174 QAVI--DAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHH--HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHH--HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 0000 0123456889999999999999999988775
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=69.17 E-value=45 Score=42.23 Aligned_cols=197 Identities=16% Similarity=0.175 Sum_probs=111.8
Q ss_pred HHHHhhcCCchhHhHHHHHHHHHHhhhccC-CchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHh
Q 000103 1713 ERLVRSLSDSSYEVRLSTLKWLLKFLKSTE-SDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLF 1791 (2224)
Q Consensus 1713 ~~l~~~L~~~~yevR~~tlk~ll~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~ 1791 (2224)
++++..|.+...|+++.|.+.+.|.+..++ +.+ ...-..+.=+.|+++|....++.....+..+|.
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi-------------~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~ 126 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPI-------------DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 126 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCH-------------HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchH-------------HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 557888999999999999999999875433 222 222334566778888888888887766666664
Q ss_pred ccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHH---HHHHHhhhhhhhhhh
Q 000103 1792 TWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRR---FANLFTSSILVDARK 1868 (2224)
Q Consensus 1792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~---~~~~~~~~~~~~~~~ 1868 (2224)
..-. ..++....+.-.| .+ ..++.+-. +.++.+|+.++.+++.+... ....+.
T Consensus 127 nias------~~~e~~~~vv~~G-------aI-p~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~~v~--------- 182 (510)
T 3ul1_B 127 NIAS------GTSEQTKAVVDGG-------AI-PAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDLVI--------- 182 (510)
T ss_dssp HHHT------SCHHHHHHHHHTT-------HH-HHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHH---------
T ss_pred HHhc------CCHHHHHHHHHCC-------CH-HHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHH---------
Confidence 3211 0011100110000 11 12444443 45677888888888773320 000000
Q ss_pred hhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCc
Q 000103 1869 KTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEP 1948 (2224)
Q Consensus 1869 ~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 1948 (2224)
.. ..+..++.++.....+.....+.+.++.+|... .. +. .+.
T Consensus 183 -----------~~-----G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl-----~~-------~~-~~~--------- 224 (510)
T 3ul1_B 183 -----------KH-----GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL-----CR-------NK-NPA--------- 224 (510)
T ss_dssp -----------HT-----TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH-----HC-------CC-SSC---------
T ss_pred -----------Hc-----CChHHHHHHHHhccchhhhHHHHHHHHHHHHHH-----hh-------cc-cch---------
Confidence 00 124666777765555555666666666666543 11 10 000
Q ss_pred ccccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhhh
Q 000103 1949 QEAGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKCF 1989 (2224)
Q Consensus 1949 ~~~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~ 1989 (2224)
... ..+=.+--.+.+||+++|..+|..++.++..+.
T Consensus 225 ---~~~--~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 225 ---PPL--DAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp ---CCH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ---hHH--HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 010 111123346788999999999999998887664
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=68.27 E-value=1.4e+02 Score=32.61 Aligned_cols=198 Identities=14% Similarity=0.081 Sum_probs=112.1
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhH
Q 000103 1710 GLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRL 1789 (2224)
Q Consensus 1710 ~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~i 1789 (2224)
+..+.|+.+|.++..++|..++..|.......... -......+.=+.+++++. .++++....++..
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~ 109 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA-------------IKAIVDAGGVEVLVKLLT-STDSEVQKEAARA 109 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-------------HHHHHHTTHHHHHHHHTT-CSSHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH-------------HHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHH
Confidence 44566888999999999999999998885431111 111122233445666665 5678888888888
Q ss_pred HhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 000103 1790 LFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKK 1869 (2224)
Q Consensus 1790 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1869 (2224)
|..+-.. .++....+ . .......++.+... .++.+|..++.+++.+...-- +.
T Consensus 110 L~~l~~~------~~~~~~~~--~------~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~---------~~--- 162 (252)
T 4hxt_A 110 LANIASG------PDEAIKAI--V------DAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPD---------EA--- 162 (252)
T ss_dssp HHHHTTS------CHHHHHHH--H------HTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCH---------HH---
T ss_pred HHHHHcC------CHHHHHHH--H------HCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCH---------HH---
Confidence 7654421 01110000 0 01134556666554 446678777777776322000 00
Q ss_pred hccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcc
Q 000103 1870 TIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQ 1949 (2224)
Q Consensus 1870 ~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 (2224)
... +-+ ...+..+++++. +...++|.+|+.+|..-. .- ++
T Consensus 163 ~~~------~~~----~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~-----~~------~~-------------- 202 (252)
T 4hxt_A 163 IKA------IVD----AGGVEVLVKLLT-----STDSEVQKEAARALANIA-----SG------PT-------------- 202 (252)
T ss_dssp HHH------HHH----TTHHHHHHHHTT-----CSCHHHHHHHHHHHHHHT-----TS------BH--------------
T ss_pred HHH------HHH----CcCHHHHHHHHC-----CCCHHHHHHHHHHHHHHH-----cC------CH--------------
Confidence 000 000 013466666665 233589999999987741 00 00
Q ss_pred cccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhhhh
Q 000103 1950 EAGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKCFS 1990 (2224)
Q Consensus 1950 ~~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~~ 1990 (2224)
+...... --...-.++.+|+++|..+|..+..++..+..
T Consensus 203 ~~~~~l~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 203 SAIKAIV--DAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHH--HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 0000000 01245678999999999999999999998874
No 33
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=66.63 E-value=1.5e+02 Score=32.36 Aligned_cols=194 Identities=12% Similarity=0.091 Sum_probs=106.8
Q ss_pred HHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHhc
Q 000103 1713 ERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLFT 1792 (2224)
Q Consensus 1713 ~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~~ 1792 (2224)
+.|+.+|.++..++|..+++.|.......... .......+.=+.+++++.. .++.....++.+|..
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~-------------~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~ 70 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASA-------------IKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALAN 70 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-------------HHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH-------------HHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 56888899988999999999998885432211 1122233444556666655 458888888887764
Q ss_pred cchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 000103 1793 WNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKKTIE 1872 (2224)
Q Consensus 1793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1872 (2224)
.... .++.... +. ....-..++.+... .++.+|+.++.+++.+... . .+. ...
T Consensus 71 l~~~------~~~~~~~--~~------~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~-------~--~~~---~~~ 123 (252)
T 4hxt_A 71 IASG------PDEAIKA--IV------DAGGVEVLVKLLTS-TDSEVQKEAARALANIASG-------P--DEA---IKA 123 (252)
T ss_dssp HTTS------CHHHHHH--HH------HTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTS-------C--HHH---HHH
T ss_pred HHcC------ChHHHHH--HH------HCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcC-------C--HHH---HHH
Confidence 4331 0110000 00 00123335555553 4566777777776663210 0 000 000
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCccccc
Q 000103 1873 ISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQEAG 1952 (2224)
Q Consensus 1873 ~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1952 (2224)
+-+. ..+...++++.. ...++|..|+.+|..-. .- + ++...
T Consensus 124 ------~~~~----~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~-----~~------~-------------~~~~~ 164 (252)
T 4hxt_A 124 ------IVDA----GGVEVLVKLLTS-----TDSEVQKEAARALANIA-----SG------P-------------DEAIK 164 (252)
T ss_dssp ------HHHT----THHHHHHHHTTC-----SCHHHHHHHHHHHHHHT-----TS------C-------------HHHHH
T ss_pred ------HHHC----CCHHHHHHHHcC-----CCHHHHHHHHHHHHHHH-----cC------C-------------HHHHH
Confidence 0000 134555555542 23679999999998741 10 0 00000
Q ss_pred chhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhhh
Q 000103 1953 NMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKCF 1989 (2224)
Q Consensus 1953 ~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~ 1989 (2224)
.... -..--.++.+|+++|..+|..++..+..+.
T Consensus 165 ~~~~---~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 165 AIVD---AGGVEVLVKLLTSTDSEVQKEAARALANIA 198 (252)
T ss_dssp HHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHH---CcCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 1111 124456789999999999999999998775
No 34
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=65.46 E-value=16 Score=44.37 Aligned_cols=135 Identities=10% Similarity=0.086 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHcC-------------------CCcchhhHHhHHHHHHHHHhccC-------CCchhhhchHHHHHHHH
Q 000103 1335 TVHAFNILRAAFND-------------------TNLAADTSAFSAEALIISIRSFS-------SPYWEIRNSACLAYTAL 1388 (2224)
Q Consensus 1335 qVHALNiLRaIF~D-------------------s~Ls~~~~~Yi~~aL~lAi~~F~-------S~~WaIRNsAlMLFsAL 1388 (2224)
+..|+..+..+... ..+...+.+|+...+-..++.+. +..|.+|-+|..++..+
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l 355 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence 56677766666543 23334455666666666655553 46799999999998887
Q ss_pred HHHHhccccCCchhhhhhccchhhhhhcCCChHHHHHHHHHHHHhhhcCCCCCCcccccccccccchHHHHHHHhccCCC
Q 000103 1389 IRRMLGFLNVQKRESARRALTGLEFFHRYPSLHPFIFNELRVITELLGNASSGQSASNLANVVHPSLCPMLILLCRLKPS 1468 (2224)
Q Consensus 1389 i~RifG~~~~~~~~s~r~~~t~~eFF~RYP~L~~fLl~~L~~a~~~l~~~~s~~~es~~a~~~~psLfPiL~LLSRL~Ps 1468 (2224)
... +|. . . .|.+.+++.+.|+. .. . ..-..++..|+.+-..
T Consensus 356 ~~~-~~~-------~---------~---~~~~~~~l~~~l~~-------~~---------~---~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 356 ATC-CED-------D---------I---VPHVLPFIKEHIKN-------PD---------W---RYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHH-TTT-------T---------H---HHHHHHHHHHHTTC-------SS---------H---HHHHHHHHHHHHTSSS
T ss_pred HHh-ccH-------H---------H---HHHHHHHHHHHhcC-------CC---------h---HHHHHHHHHHHHHhcC
Confidence 664 331 0 0 12344444433321 00 0 0224666777776643
Q ss_pred CCCCCCCCCCCccccHHHHHHHhCCCChHHHHHHHHHhhccC
Q 000103 1469 ALAGESGDDLDPFLFMPFIRRCSTQSNLKVRVLASRALTGLV 1510 (2224)
Q Consensus 1469 ~~~~~~~d~L~~~~F~p~I~rcl~s~~~~VRelAARALasLv 1510 (2224)
.......+.+ ..++|.+.+++.+++..||..|+.+|..+.
T Consensus 397 ~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 397 PEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp SCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2111011222 358999999999999999999999986654
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=65.06 E-value=2.8e+02 Score=34.86 Aligned_cols=203 Identities=11% Similarity=0.064 Sum_probs=101.2
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhH
Q 000103 1710 GLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRL 1789 (2224)
Q Consensus 1710 ~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~i 1789 (2224)
.+.+.|+.+|.+...+|+..+++.|-......... .......+.-+.+..+| ..+++...+.+...
T Consensus 274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~-------------~~~i~~~g~l~~L~~LL-~~~~~~v~~~A~~a 339 (510)
T 3ul1_B 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-------------TQKVIDAGALAVFPSLL-TNPKTNIQKEATWT 339 (510)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH-------------HHHHHHTTGGGGCC-CT-TCSSHHHHHHHHHH
T ss_pred ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHH-------------HHHHhhccchHHHHHHh-cCCCHHHHHHHHHH
Confidence 45567889999999999999999988764321110 00000111111222333 44555555555554
Q ss_pred HhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 000103 1790 LFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKK 1869 (2224)
Q Consensus 1790 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1869 (2224)
|...... .+.....+.. ..+-..++.+.... +.++|..+..+++.+...-....... +
T Consensus 340 L~nl~a~------~~~~~~~v~~--------~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~-----L-- 397 (510)
T 3ul1_B 340 MSNITAG------RQDQIQQVVN--------HGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVY-----L-- 397 (510)
T ss_dssp HHHHTTS------CHHHHHHHHH--------TTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHH-----H--
T ss_pred HHHHHcC------cHHHHHHHHh--------cCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHH-----H--
Confidence 4322210 0000000000 01223455555544 45566666555554222100000000 0
Q ss_pred hccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcc
Q 000103 1870 TIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQ 1949 (2224)
Q Consensus 1870 ~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 (2224)
. +. .++..+++++. +...+++..+.++|... |..++..+ +
T Consensus 398 ----~-----~~-----g~i~~L~~LL~-----~~d~~i~~~~L~aL~ni--l~~~~~~~-----------------~-- 437 (510)
T 3ul1_B 398 ----V-----HC-----GIIEPLMNLLS-----AKDTKIIQVILDAISNI--FQAAEKLG-----------------E-- 437 (510)
T ss_dssp ----H-----HT-----TCHHHHHHGGG-----CSCHHHHHHHHHHHHHH--HHHHHTTT-----------------C--
T ss_pred ----H-----HC-----CCHHHHHHHhc-----CCCHHHHHHHHHHHHHH--HHHhHhcc-----------------c--
Confidence 0 00 13566777764 23568999999998763 33222110 0
Q ss_pred cccchhhHHH--HHHHHHHHHhhcccCHHHHHHHHHHHHhhhh
Q 000103 1950 EAGNMYAHQV--LVIWFTCIKLLEDEDDGIRQRLAIDVQKCFS 1990 (2224)
Q Consensus 1950 ~~~~~~~~~~--l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~~ 1990 (2224)
.+.|...+ ...+-.+-.|..+|++.|++++..++.+.|.
T Consensus 438 --~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 438 --TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp --HHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred --hHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 02222221 1234555677778999999999999999984
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=61.36 E-value=4.1e+02 Score=35.50 Aligned_cols=118 Identities=11% Similarity=-0.018 Sum_probs=63.4
Q ss_pred hhhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCC-cchHHHHH
Q 000103 1709 SGLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKN-PRCTNYVL 1787 (2224)
Q Consensus 1709 ~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~-~~C~~~~l 1787 (2224)
.++.+.|+.+|.+...+||..+...|-......... .......+.=+.|+++|..... ......++
T Consensus 398 ~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~-------------~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al 464 (780)
T 2z6g_A 398 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-------------KMMVCQVGGIEALVRTVLRAGDREDITEPAI 464 (780)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH-------------HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH-------------HHHHHHCCCHHHHHHHHHccCCHHHHHHHHH
Confidence 567788999999999999999999888774321100 0111112233455666665433 36777777
Q ss_pred hHHhccchhhhhhcCCCccccc-cccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHH
Q 000103 1788 RLLFTWNLLQFQKLGSNVCTET-IFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICI 1851 (2224)
Q Consensus 1788 ~il~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~ 1851 (2224)
+.|..+... .++.... ..+. .......|+.+........+|+.+..+++.+.
T Consensus 465 ~aL~nL~~~------~~~~~~~~~~v~------~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa 517 (780)
T 2z6g_A 465 CALRHLTSR------HQDAEMAQNAVR------LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 517 (780)
T ss_dssp HHHHHTTSS------STTHHHHHHHHH------HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc------CchHHHHHHHHH------HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHh
Confidence 777644321 0000000 0000 00113446666665555567777766666643
No 37
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.53 E-value=66 Score=35.02 Aligned_cols=119 Identities=14% Similarity=0.053 Sum_probs=74.1
Q ss_pred HHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHh
Q 000103 1712 LERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLF 1791 (2224)
Q Consensus 1712 ~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~ 1791 (2224)
.+.|+.+|.|+.++||..+++.|-+.-. ...-+.+.+++ .++++.-...+.+.|.
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------------------~~~~~~L~~~l-~d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD------------------------ERAVEPLIKAL-KDEDWFVRIAAAFALG 137 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------------------------GGGHHHHHHHT-TCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------------------------HHHHHHHHHHH-hCCCHHHHHHHHHHHH
Confidence 3457788999999999999999987711 01123344544 6778888888877776
Q ss_pred ccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 000103 1792 TWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKKTI 1871 (2224)
Q Consensus 1792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1871 (2224)
.+.- ++ . ...+..+. .+.++.+|..++..++.. ..
T Consensus 138 ~~~~--------~~-------------~----~~~L~~~l-~d~~~~vr~~a~~aL~~~--------~~----------- 172 (211)
T 3ltm_A 138 EIGD--------ER-------------A----VEPLIKAL-KDEDGWVRQSAADALGEI--------GG----------- 172 (211)
T ss_dssp HHCC--------GG-------------G----HHHHHHHT-TCSSHHHHHHHHHHHHHH--------CS-----------
T ss_pred HcCC--------HH-------------H----HHHHHHHH-cCCCHHHHHHHHHHHHHh--------Cc-----------
Confidence 5432 11 0 12244443 456677888888887771 00
Q ss_pred cccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhh
Q 000103 1872 EISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVAS 1919 (2224)
Q Consensus 1872 ~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s 1919 (2224)
-+.+..+.+++.. ....+|.+|+++|...
T Consensus 173 --------------~~~~~~L~~~l~d-----~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 173 --------------ERVRAAMEKLAET-----GTGFARKVAVNYLETH 201 (211)
T ss_dssp --------------HHHHHHHHHHHHH-----CCHHHHHHHHHHHHC-
T ss_pred --------------hhHHHHHHHHHhC-----CCHHHHHHHHHHHHhc
Confidence 0123444455442 2356999999999886
No 38
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=60.21 E-value=93 Score=35.45 Aligned_cols=100 Identities=8% Similarity=0.010 Sum_probs=60.3
Q ss_pred hHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHH
Q 000103 1711 LLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLL 1790 (2224)
Q Consensus 1711 l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il 1790 (2224)
..+.|+.+|.|+.++||..+...|-+.-.... ....+-+.+.+.+.+++++.....+.+.|
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-------------------~~~~l~~~L~~~~~~d~~~~vr~~a~~aL 115 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-------------------CEDNVFNILNNMALNDKSACVRATAIEST 115 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-------------------THHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-------------------cchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 44567888999999999999988866521100 01123334444567889999988888888
Q ss_pred hccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHH
Q 000103 1791 FTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAI 1849 (2224)
Q Consensus 1791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~ 1849 (2224)
..+... .+. ....+...++... .+.++.+|..++.++|.
T Consensus 116 ~~l~~~------~~~-------------~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 116 AQRCKK------NPI-------------YSPKIVEQSQITA-FDKSTNVRRATAFAISV 154 (280)
T ss_dssp HHHHHH------CGG-------------GHHHHHHHHHHHT-TCSCHHHHHHHHHHHHT
T ss_pred HHHhcc------CCc-------------ccHHHHHHHHHHh-hCCCHHHHHHHHHHHHh
Confidence 765431 000 0112223333332 34667788877777765
No 39
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=58.90 E-value=94 Score=39.39 Aligned_cols=201 Identities=15% Similarity=0.138 Sum_probs=110.7
Q ss_pred HHHHHhhcCCchhHhHHHHHHHHHHhhhccCC-chhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHH
Q 000103 1712 LERLVRSLSDSSYEVRLSTLKWLLKFLKSTES-DREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLL 1790 (2224)
Q Consensus 1712 ~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il 1790 (2224)
.++++..|.+...++++.+++.+.|.+..... . +...-..+.=+.|+++|....++.....+..+|
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~-------------i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL 144 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPP-------------IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 144 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCC-------------HHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCch-------------HHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45678888999999999999999998743332 2 223334556677888888888888888777776
Q ss_pred hccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 000103 1791 FTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKKT 1870 (2224)
Q Consensus 1791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 1870 (2224)
..+-.. .++....+...| .+- .++.+. .+.++.+|+.++.++|.+... .
T Consensus 145 ~nia~~------~~~~~~~vv~~G-------aip-~Lv~LL-~s~~~~v~e~A~~aL~nLa~~------------~---- 193 (529)
T 3tpo_A 145 TNIASG------TSEQTKAVVDGG-------AIP-AFISLL-ASPHAHISEQAVWALGNIAGA------------G---- 193 (529)
T ss_dssp HHHHTS------CHHHHHHHHHTT-------HHH-HHHHHT-TCSCHHHHHHHHHHHHHHHTT------------C----
T ss_pred HHHHcC------CHHHHHHHHHCC-------CHH-HHHHHH-cCCCHHHHHHHHHHHHHHhcc------------C----
Confidence 533220 011100111110 111 234433 345667888888777763210 0
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCccc
Q 000103 1871 IEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQE 1950 (2224)
Q Consensus 1871 ~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1950 (2224)
.+.+. .+-.. ..+..++.++.....+.....+.+.++.+|... .. +. .|.
T Consensus 194 ~~~r~--~i~~~----g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl-----~~-------~~-~~~----------- 243 (529)
T 3tpo_A 194 SAFRD--LVIKH----GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL-----CR-------NK-NPA----------- 243 (529)
T ss_dssp HHHHH--HHHHT----TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH-----HC-------CC-TTC-----------
T ss_pred HHHHH--HHHHc----CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH-----Hh-------cc-cch-----------
Confidence 00000 00000 124566666665544555566666666666542 00 10 000
Q ss_pred ccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhhh
Q 000103 1951 AGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKCF 1989 (2224)
Q Consensus 1951 ~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~ 1989 (2224)
... ..+-.+=-.+++||+++|+.|+..++.++..+.
T Consensus 244 -~~~--~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~ 279 (529)
T 3tpo_A 244 -PPL--DAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 279 (529)
T ss_dssp -CCH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred -hhH--HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 010 111112235778999999999999988887654
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=56.43 E-value=3.9e+02 Score=33.67 Aligned_cols=200 Identities=13% Similarity=0.119 Sum_probs=101.8
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhH
Q 000103 1710 GLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRL 1789 (2224)
Q Consensus 1710 ~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~i 1789 (2224)
++.+.|+.+|.++..+|+..+++.|.......... .......+.-+.+..+|. .+++...+.+...
T Consensus 293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~-------------~~~i~~~g~l~~L~~LL~-~~~~~i~~~a~~a 358 (529)
T 3tpo_A 293 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-------------TQKVIDAGALAVFPSLLT-NPKTNIQKEATWT 358 (529)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH-------------HHHHHHTTGGGGHHHHTT-CSSHHHHHHHHHH
T ss_pred cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHH-------------HHHHhhcccHHHHHHHHc-CCCHHHHHHHHHH
Confidence 45567889999999999999999988774321110 001111112223444443 4556555555544
Q ss_pred Hhcc---chhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000103 1790 LFTW---NLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDA 1866 (2224)
Q Consensus 1790 l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~ 1866 (2224)
|... +..+.+..- - ..+...++.+.... +.++|..+..+++.+... + +.+.
T Consensus 359 L~nl~~~~~~~~~~v~---------~--------~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~-------~-~~~~ 412 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVV---------N--------HGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSG-------G-TVEQ 412 (529)
T ss_dssp HHHHHTSCHHHHHHHH---------H--------TTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH-------S-CHHH
T ss_pred HHHHhcccHHHHHHHH---------h--------cCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcC-------C-CHHH
Confidence 4322 221111100 0 01223355555544 445666665555542211 0 0000
Q ss_pred hhhhccccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCC
Q 000103 1867 RKKTIEISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHF 1946 (2224)
Q Consensus 1867 ~~~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~ 1946 (2224)
+ .... +. .++..+++++. +...+++..+.++|... |..++..+
T Consensus 413 ~---~~l~-----~~-----g~i~~L~~LL~-----~~d~~i~~~~L~aL~ni--l~~~~~~~----------------- 455 (529)
T 3tpo_A 413 I---VYLV-----HC-----GIIEPLMNLLS-----AKDTKIIQVILDAISNI--FQAAEKLG----------------- 455 (529)
T ss_dssp H---HHHH-----HT-----TCHHHHHHGGG-----CSCHHHHHHHHHHHHHH--HHHHHTTT-----------------
T ss_pred H---HHHH-----HC-----cCHHHHHHHhc-----CCCHHHHHHHHHHHHHH--HHHhHhcc-----------------
Confidence 0 0000 00 13566777764 23467899999998763 33332110
Q ss_pred CcccccchhhHHH--HHHHHHHHHhhcccCHHHHHHHHHHHHhhhh
Q 000103 1947 EPQEAGNMYAHQV--LVIWFTCIKLLEDEDDGIRQRLAIDVQKCFS 1990 (2224)
Q Consensus 1947 ~~~~~~~~~~~~~--l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~~ 1990 (2224)
+ .+.|...+ ...+-.+-.|..++++.|+.++..++.+-|.
T Consensus 456 ~----~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 456 E----TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp C----HHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred C----hHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 0 01222211 1234456678889999999999999999884
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=52.46 E-value=1.2e+02 Score=32.59 Aligned_cols=119 Identities=14% Similarity=0.057 Sum_probs=74.1
Q ss_pred HHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcCCcchHHHHHhHHh
Q 000103 1712 LERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEKNPRCTNYVLRLLF 1791 (2224)
Q Consensus 1712 ~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~~~~C~~~~l~il~ 1791 (2224)
.+.|+.+|.|+..+||..+++.|-+.-. ...-+.+.+++ .++++.-+..+.+.|.
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------------------~~~~~~L~~~l-~d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGD------------------------ERAVEPLIKAL-KDEDWFVRIAAAFALG 132 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------------------------GGGHHHHHHHT-TCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------------------------HHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 3457788999999999999999987611 01223344544 5678888888877776
Q ss_pred ccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 000103 1792 TWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKKTI 1871 (2224)
Q Consensus 1792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1871 (2224)
.+.- ++ ....++.+.. +.++.+|..++..+|.. . .
T Consensus 133 ~~~~--------~~-----------------~~~~L~~~l~-d~~~~vr~~A~~aL~~~----~----~----------- 167 (201)
T 3ltj_A 133 EIGD--------ER-----------------AVEPLIKALK-DEDGWVRQSAADALGEI----G----G----------- 167 (201)
T ss_dssp HHTC--------GG-----------------GHHHHHHHTT-CSSHHHHHHHHHHHHHH----C----S-----------
T ss_pred HhCC--------HH-----------------HHHHHHHHHc-CCCHHHHHHHHHHHHHh----C----c-----------
Confidence 5532 11 1222444443 45677888888887772 0 0
Q ss_pred cccccccccccchHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhh
Q 000103 1872 EISESDHLGRSAHLFACITAFVNIINRHSSSSEPVNMRKAATGSIVAS 1919 (2224)
Q Consensus 1872 ~~~~~~~~~~~~~l~~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s 1919 (2224)
-+.+..+.+++.. ....+|.+|+++|..-
T Consensus 168 --------------~~~~~~L~~~l~d-----~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 168 --------------ERVRAAMEKLAET-----GTGFARKVAVNYLETH 196 (201)
T ss_dssp --------------HHHHHHHHHHHHH-----CCHHHHHHHHHHHHHC
T ss_pred --------------hhHHHHHHHHHhC-----CCHHHHHHHHHHHHHH
Confidence 0123444444432 2467999999999874
No 42
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=49.70 E-value=23 Score=48.37 Aligned_cols=148 Identities=12% Similarity=0.080 Sum_probs=86.8
Q ss_pred cchHHHHHHHHHHHcCCC--cchhhHHhHHHHHHHHHhccCCCchhhhchHHHHHHHHHHHHhccccCCchhhhhhccch
Q 000103 1333 VPTVHAFNILRAAFNDTN--LAADTSAFSAEALIISIRSFSSPYWEIRNSACLAYTALIRRMLGFLNVQKRESARRALTG 1410 (2224)
Q Consensus 1333 lPqVHALNiLRaIF~Ds~--Ls~~~~~Yi~~aL~lAi~~F~S~~WaIRNsAlMLFsALi~RifG~~~~~~~~s~r~~~t~ 1410 (2224)
.|+.-|.++|+.+...-. +.+.+.+|+.+.+.-.. .-.++.|..|=+|+++|+++..+..|... +.. .
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~-~~~~~~w~~reaal~algaia~~~~~~~~---~~~---~--- 445 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYM-SDPSKNWKFKDLYIYLFTALAINGNITNA---GVS---S--- 445 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-C----CHHHHHHHHHHHHHHHBSSCCBTT---BCC---C---
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhc-cCcchhHHHHHHHHHHHHHHHHHhccccC---Ccc---c---
Confidence 689999999998876632 22234445544443211 11368899999999999999655433210 000 0
Q ss_pred hhhhhcCCChHHHHHHHHHHHHhhhcCCCCCCcccccccccccch-HHHHHHHhccCCCCCCCCCCCCCCccccHHHHHH
Q 000103 1411 LEFFHRYPSLHPFIFNELRVITELLGNASSGQSASNLANVVHPSL-CPMLILLCRLKPSALAGESGDDLDPFLFMPFIRR 1489 (2224)
Q Consensus 1411 ~eFF~RYP~L~~fLl~~L~~a~~~l~~~~s~~~es~~a~~~~psL-fPiL~LLSRL~Ps~~~~~~~d~L~~~~F~p~I~r 1489 (2224)
-..++.+.+||.+.+-... .++. ..||-| .-++..|+|...- .. .+. ....+|.+.+
T Consensus 446 ---~~~~~~l~~~l~~~v~p~l---~~~~----------~~~p~vr~~a~~~lg~~~~~-~~---~~~--l~~~l~~l~~ 503 (960)
T 1wa5_C 446 ---TNNLLNVVDFFTKEIAPDL---TSNN----------IPHIILRVDAIKYIYTFRNQ-LT---KAQ--LIELMPILAT 503 (960)
T ss_dssp ---BCTTCCHHHHHHHHTHHHH---HCSS----------CSCHHHHHHHHHHHHHTGGG-SC---HHH--HHHHHHHHHH
T ss_pred ---ccccccHHHHHHHHhHHHh---cCCC----------CCCceehHHHHHHHHHHHhh-CC---HHH--HHHHHHHHHH
Confidence 0123466676655433221 1110 013322 4566788876542 11 011 1357788899
Q ss_pred HhCCCChHHHHHHHHHhhccCCC
Q 000103 1490 CSTQSNLKVRVLASRALTGLVPN 1512 (2224)
Q Consensus 1490 cl~s~~~~VRelAARALasLv~~ 1512 (2224)
++.+++..||..||.|+..|+..
T Consensus 504 ~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 504 FLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HhCCCChhHHHHHHHHHHHHHhc
Confidence 99999999999999999998763
No 43
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=46.03 E-value=83 Score=36.23 Aligned_cols=157 Identities=11% Similarity=0.119 Sum_probs=91.8
Q ss_pred hhhhHHHHHhhc-CCchhHhHHHHHHHHHHhhhccC-Cchhhhhccccchhhhh-hhhhhhhHHHHHHHhhhcCCcchHH
Q 000103 1708 FSGLLERLVRSL-SDSSYEVRLSTLKWLLKFLKSTE-SDREVCELSSYEIKSIQ-NWTKNNLQATLMSRLELEKNPRCTN 1784 (2224)
Q Consensus 1708 ~~~l~~~l~~~L-~~~~yevR~~tlk~ll~~~~s~~-~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~E~~~~C~~ 1784 (2224)
+.++.+.|...| .|+..-||.+|++.|-...+.-+ +. +. .... .+=+.+++.+ .|+++....
T Consensus 58 ~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~-------------f~~~y~~-~llp~ll~~l-~dkk~~V~~ 122 (249)
T 2qk1_A 58 YSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG-------------FSKDYVS-LVFTPLLDRT-KEKKPSVIE 122 (249)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT-------------SCHHHHH-HHHHHHHHGG-GCCCHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc-------------ccHHHHH-HHHHHHHHHH-cCCCHHHHH
Confidence 456667788888 69999999999999988754222 21 22 2222 2334455544 688887766
Q ss_pred HHHhHHhccchhhhhhcCCCccccccccCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000103 1785 YVLRLLFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILV 1864 (2224)
Q Consensus 1785 ~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~ 1864 (2224)
.+-..+..+-.. .++.. .+ .....+++.+.....+ .+..+|+..+.+++.|+......
T Consensus 123 aa~~al~~i~~~-----~~~~~---~~------~~l~~ll~~l~~~l~~-k~~~vk~~al~~l~~~~~~~~~~------- 180 (249)
T 2qk1_A 123 AIRKALLTICKY-----YDPLA---SS------GRNEDMLKDILEHMKH-KTPQIRMECTQLFNASMKEEKDG------- 180 (249)
T ss_dssp HHHHHHHHHHHH-----SCTTC---TT------CTTHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCCSC-------
T ss_pred HHHHHHHHHHHH-----ccccc---cC------CcHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCc-------
Confidence 655555433331 00000 00 0123566666655444 47889999999999976542210
Q ss_pred hhhhhhccccccccccccchHHHHH-HHHHHHHHhhcCCCCChHHHHHHHHHHHhh
Q 000103 1865 DARKKTIEISESDHLGRSAHLFACI-TAFVNIINRHSSSSEPVNMRKAATGSIVAS 1919 (2224)
Q Consensus 1865 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s 1919 (2224)
+ ..+.+++ +..+..+...-.++ -.++|.||.+.|...
T Consensus 181 --------~---------~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 181 --------Y---------STLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAIL 218 (249)
T ss_dssp --------S---------HHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHH
T ss_pred --------c---------hhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 0 0022334 44455555444444 567999999999996
No 44
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=42.88 E-value=6.6e+02 Score=32.36 Aligned_cols=30 Identities=13% Similarity=0.023 Sum_probs=26.6
Q ss_pred ccHHHHHHHhCCCChHHHHHHHHHhhccCC
Q 000103 1482 LFMPFIRRCSTQSNLKVRVLASRALTGLVP 1511 (2224)
Q Consensus 1482 ~F~p~I~rcl~s~~~~VRelAARALasLv~ 1511 (2224)
..+|.+.+++.++++++|..|+++|..+..
T Consensus 140 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 140 GGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999988875
No 45
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=42.69 E-value=60 Score=33.10 Aligned_cols=45 Identities=18% Similarity=0.064 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHH
Q 000103 1905 PVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQEAGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAID 1984 (2224)
Q Consensus 1905 p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~ 1984 (2224)
...+|.+|+++|...|. .. ..-.++++|+|+|..||..++..
T Consensus 86 ~~~VR~~A~~aL~~~~~-----------------------------------~~---a~~~L~~~l~d~~~~vr~~A~~a 127 (131)
T 1te4_A 86 SGFVRSGAARSLEQIGG-----------------------------------ER---VRAAMEKLAETGTGFARKVAVNY 127 (131)
T ss_dssp CTHHHHHHHHHHHHHCS-----------------------------------HH---HHHHHHHHTTSCCTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-----------------------------------HH---HHHHHHHHHhCCCHHHHHHHHHH
Confidence 35899999999988641 01 22346788999999999999887
Q ss_pred HHh
Q 000103 1985 VQK 1987 (2224)
Q Consensus 1985 v~~ 1987 (2224)
+.+
T Consensus 128 L~~ 130 (131)
T 1te4_A 128 LET 130 (131)
T ss_dssp GGG
T ss_pred HHh
Confidence 654
No 46
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=41.21 E-value=3.1e+02 Score=35.45 Aligned_cols=205 Identities=12% Similarity=0.017 Sum_probs=108.3
Q ss_pred hhhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhhcC-CcchHHHHH
Q 000103 1709 SGLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLELEK-NPRCTNYVL 1787 (2224)
Q Consensus 1709 ~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~E~-~~~C~~~~l 1787 (2224)
.++.+.|+.+|.+...+||..+...|.......... .......+.=+.++++|.... ++.....++
T Consensus 262 ~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~-------------~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~ 328 (644)
T 2z6h_A 262 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-------------KMMVCQVGGIEALVRTVLRAGDREDITEPAI 328 (644)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-------------HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-------------HHHHHHcCCHHHHHHHHHccCCcHHHHHHHH
Confidence 467778999999999999999999988774321110 111122233455666666543 467777777
Q ss_pred hHHhccchhhhhhcCCCccccccc-cCCCCCchhHHHHHHHHHhhhhchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000103 1788 RLLFTWNLLQFQKLGSNVCTETIF-VGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDA 1866 (2224)
Q Consensus 1788 ~il~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~l~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~~~~~ 1866 (2224)
+.|..+... .++...... +. .......++.+.....++.+|+.+..+++.+.. + . +.
T Consensus 329 ~aL~nL~~~------~~~~~~~q~~v~------~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~--------~-~-~~ 386 (644)
T 2z6h_A 329 CALRHLTSR------HQEAEMAQNAVR------LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--------C-P-AN 386 (644)
T ss_dssp HHHHHHTSS------STTHHHHHHHHH------HTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT--------S-G-GG
T ss_pred HHHHHHhcC------CchHHHHHHHHH------HccChHHHHHHhCccCchHHHHHHHHHHHHHcc--------C-H-HH
Confidence 777654320 000000000 00 001234566666655555666666655554221 0 0 00
Q ss_pred hhhhccccccccccccchHHHHHHHHHHHHHh-----------------hcCCCCChHHHHHHHHHHHhhchhhhhhccc
Q 000103 1867 RKKTIEISESDHLGRSAHLFACITAFVNIINR-----------------HSSSSEPVNMRKAATGSIVASGLLEQADLIG 1929 (2224)
Q Consensus 1867 ~~~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~-----------------~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~ 1929 (2224)
... +-+. ..+..+++++.. ......+.+++.+|+.+|.... .
T Consensus 387 ---~~~------i~~~----~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La-----~--- 445 (644)
T 2z6h_A 387 ---HAP------LREQ----GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-----R--- 445 (644)
T ss_dssp ---HHH------HHHT----THHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHT-----T---
T ss_pred ---HHH------HHHc----CCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHh-----c---
Confidence 000 0000 122333444333 2333457788999999887641 1
Q ss_pred ccccccCCCCCCCCCCCCcccccchhhHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhhh
Q 000103 1930 SYVSNHQIPSENSSLHFEPQEAGNMYAHQVLVIWFTCIKLLEDEDDGIRQRLAIDVQKCF 1989 (2224)
Q Consensus 1930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~LLeDeD~~iR~~~a~~v~~~~ 1989 (2224)
++ .+...-.--..+-.++.||.|.++.||..++..+..+.
T Consensus 446 ----~~----------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~ 485 (644)
T 2z6h_A 446 ----DV----------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 485 (644)
T ss_dssp ----SH----------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred ----CH----------------HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 00 01100011135678899999999999999998887764
No 47
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=39.84 E-value=89 Score=36.92 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=76.9
Q ss_pred chhHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhhcccCCCchhchHHHHHHHHHHhCCCccc-cccccHHHHH
Q 000103 425 PEDMGTRILRIIWNNLEDPLSQTVKQVHLVFDLFLDIESSLRWDVGSERIKSFLQKIASDLLCLGPRCK-GRYVPLALLT 503 (2224)
Q Consensus 425 ~~~~~~rlL~~Iw~nWE~Pl~~~~~Q~~~iF~~LL~I~~~~~~~~~~~~~~~Fl~~i~~~LL~l~w~~K-gKY~~L~~Lv 503 (2224)
...-...++=++-.-.-|+=+.+|.+++.|+..+..+.. ....+..+...+-.-.|..| +-.-.+.+++
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~----------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG----------PLKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC----------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 344457788888888899999999999999988777642 13344444444444444322 1223466777
Q ss_pred hhhChhhHhhcCccHH---HHHHHHcccCC--ccccHHHHHHHHHHHHHhhhh
Q 000103 504 KRLGAKTLLGMSPDLL---SEIVNAYIDDD--VCSAATSFLKCFLECLRDECW 551 (2224)
Q Consensus 504 ~~lGa~~iL~l~p~ll---~ell~aM~d~~--v~~aA~~lL~~l~~~L~~e~~ 551 (2224)
+..|... ...+ ..+...++|.+ |..+|-..+..+|....+.-|
T Consensus 196 ~~~G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~ 243 (266)
T 2of3_A 196 TNAGISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW 243 (266)
T ss_dssp HHHCSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HhcCCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 8889872 3345 67777777666 899999999999988866544
No 48
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=36.59 E-value=6.8e+02 Score=30.70 Aligned_cols=31 Identities=13% Similarity=0.027 Sum_probs=26.9
Q ss_pred ccHHHHHHHhCCCChHHHHHHHHHhhccCCC
Q 000103 1482 LFMPFIRRCSTQSNLKVRVLASRALTGLVPN 1512 (2224)
Q Consensus 1482 ~F~p~I~rcl~s~~~~VRelAARALasLv~~ 1512 (2224)
..+|.+.+++.++++.+|..|+.+|..+...
T Consensus 143 g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 143 GGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 3688899999999999999999999877653
No 49
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=35.09 E-value=5.3e+02 Score=30.39 Aligned_cols=160 Identities=17% Similarity=0.145 Sum_probs=104.1
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcCCCCCCCCCHHH----HHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHH--
Q 000103 697 WLVLALTHADELLRVDAAESLFLNPKTASLPSHLE----LTLMKEAVPLNMRSCSTAFQMKWTSLFRKFFSRVRTALE-- 770 (2224)
Q Consensus 697 ~L~~aL~H~d~~VRi~ALeLL~~SpKtT~ppS~~E----L~LIk~fL~~nl~~~s~~~Rq~~~SllKkfl~RlR~s~~-- 770 (2224)
.+...|.|.|..-|+.|++.|...-.. .+.+ ++++-+.+..-+.+.++..=+..+..+..++.|+++--+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADT----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHH----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhh----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 467778999999999999999885321 2234 777777776666788999999999999999999976310
Q ss_pred -----------HHHhcCCCCCccccCCCcccccCCchhhHHHHHHHHHHH------HHHHHHHhhcccCCCCcchhhhHH
Q 000103 771 -----------RQFKQGSWRPVVSCENSDRTLINGTDTVISKAENLFKFM------RWLSCFLFFSCYPSAPYKRKIMAM 833 (2224)
Q Consensus 771 -----------r~~k~~~~~~~~~~~ek~~~~~~~~e~~~~~le~~~~Fl------~WL~~fL~~sL~PgAsYqRki~AL 833 (2224)
-.-|.|. +.+.....+.++..-+ .-+..++.+.+ -+-+...+.-+|
T Consensus 126 ~~~ea~~~lP~LveKlGd----------------~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~R~e~l 188 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGE----------------AKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQRSECL 188 (266)
T ss_dssp CHHHHHHHHHHHHHGGGC----------------SSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC----------------ChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-ccCCHHHHHHHH
Confidence 0112221 1122211122111111 22444555544 566778888999
Q ss_pred HHHHHHHHHcCCCCCCCcccccccccccccCccCCCCcchHHHHHhhhcCcHHHHHHHHHHHHH
Q 000103 834 ELILTMMNIWSIAPPQEKLDSVSLESSLYPYNKGITAPNSTLLLVGSIIDSWDRLRESSFRILL 897 (2224)
Q Consensus 834 klL~~Lle~fg~d~~~~k~~~~~~~~~~~pf~~~i~~~~~~~lLld~L~DsyddVRe~A~~LL~ 897 (2224)
+.+..+++.+|..+ .+ ..+ ....+..++.|+=..||+.|...+.
T Consensus 189 ~~l~~li~~~G~~~--~~---------~l~---------~~~~ia~ll~D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 189 LVIEYYITNAGISP--LK---------SLS---------VEKTVAPFVGDKDVNVRNAAINVLV 232 (266)
T ss_dssp HHHHHHHHHHCSGG--GG---------GGC---------HHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCc--cc---------ccc---------chHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999988731 00 000 0145678889999999999988876
No 50
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=33.34 E-value=6.7e+02 Score=34.09 Aligned_cols=163 Identities=10% Similarity=0.148 Sum_probs=105.3
Q ss_pred hHhhhchhHHHhhhccCCCccccchhHHHHHH-HHH---HHHHHHHhhcccccCCCCCCCchhHHHHHHHHHhhcCCCcc
Q 000103 369 TILYNGILPELCSYCENPTDSHFNFHALTVLQ-ICL---QQIKTSILANLTNVSFDYDPIPEDMGTRILRIIWNNLEDPL 444 (2224)
Q Consensus 369 ~~l~d~i~~~~~~~c~~~~d~h~~f~Al~~L~-~~l---~~~K~~l~~~~~~~~~~~~~~~~~~~~rlL~~Iw~nWE~Pl 444 (2224)
.|+=++-+..|.+.+++..|.-+..+|+++|. .|- .+.+..+.- + -..++.+++-+.=|+-.
T Consensus 44 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~----~----------~~~~~~~~~~~~~~~~~ 109 (810)
T 3now_A 44 LLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTE----L----------GVPWFMRVLDQKHENCV 109 (810)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH----S----------CHHHHHHHHHCCSTTHH
T ss_pred HHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHH----c----------CHHHHHHHHcCCCHHHH
Confidence 56667777777788876566677888888884 332 233332221 1 13478888888888888
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcccC-------CCchhchHHHHHHHHHHhCCCccccccccHHHHHhhhChh------hH
Q 000103 445 SQTVKQVHLVFDLFLDIESSLRWDV-------GSERIKSFLQKIASDLLCLGPRCKGRYVPLALLTKRLGAK------TL 511 (2224)
Q Consensus 445 ~~~~~Q~~~iF~~LL~I~~~~~~~~-------~~~~~~~Fl~~i~~~LL~l~w~~KgKY~~L~~Lv~~lGa~------~i 511 (2224)
..+.+-.+.+|+.|-.+....+.+. +...-+.++..+...+-+....-.||-..+..|++-+.-+ .+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 189 (810)
T 3now_A 110 STAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERL 189 (810)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccch
Confidence 9999999999999887654433221 1123356777777778788888899999999999988222 22
Q ss_pred hhcCccHHHHHHHHccc-------------CCccccHHHHHHHHHHHHH
Q 000103 512 LGMSPDLLSEIVNAYID-------------DDVCSAATSFLKCFLECLR 547 (2224)
Q Consensus 512 L~l~p~ll~ell~aM~d-------------~~v~~aA~~lL~~l~~~L~ 547 (2224)
.. .+-+..++..-+. .+....|+-.+..+|+.++
T Consensus 190 ~~--~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~ 236 (810)
T 3now_A 190 VE--IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMY 236 (810)
T ss_dssp HH--TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCC
T ss_pred hh--HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhc
Confidence 22 2344555555332 2234456666777776653
No 51
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=33.09 E-value=4.8e+02 Score=27.85 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=28.1
Q ss_pred ccHHHHHHHhCCCChHHHHHHHHHhhccCCCC
Q 000103 1482 LFMPFIRRCSTQSNLKVRVLASRALTGLVPNE 1513 (2224)
Q Consensus 1482 ~F~p~I~rcl~s~~~~VRelAARALasLv~~~ 1513 (2224)
.+.|.+.+++.+++..+|..|+++|..+...+
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~ 43 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGG 43 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 57889999999999999999999999998544
No 52
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=31.81 E-value=4.7e+02 Score=32.14 Aligned_cols=72 Identities=15% Similarity=0.050 Sum_probs=46.0
Q ss_pred hhhHHHHHhhcCCchhHhHHHHHHHHHHhhhccCCchhhhhccccchhhhhhhhhhhhHHHHHHHhhh-cCCcchHHHHH
Q 000103 1709 SGLLERLVRSLSDSSYEVRLSTLKWLLKFLKSTESDREVCELSSYEIKSIQNWTKNNLQATLMSRLEL-EKNPRCTNYVL 1787 (2224)
Q Consensus 1709 ~~l~~~l~~~L~~~~yevR~~tlk~ll~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-E~~~~C~~~~l 1787 (2224)
.+..+.|+.+|.+...+||..+...|.......... .......+.-+.+++++.. ..++.....++
T Consensus 265 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-------------~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~ 331 (529)
T 1jdh_A 265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-------------KMMVCQVGGIEALVRTVLRAGDREDITEPAI 331 (529)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH-------------HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-------------HHHHHHcCChHHHHHHHHccCCHHHHHHHHH
Confidence 466778899999999999999999988874421111 1111222333456666655 34577777777
Q ss_pred hHHhcc
Q 000103 1788 RLLFTW 1793 (2224)
Q Consensus 1788 ~il~~~ 1793 (2224)
+.|..+
T Consensus 332 ~~L~nl 337 (529)
T 1jdh_A 332 CALRHL 337 (529)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777544
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=25.86 E-value=1.1e+03 Score=29.95 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=37.7
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCccccHHHHHHHhCCCChHHHHHHHHHhhccCC
Q 000103 1457 PMLILLCRLKPSALAGESGDDLDPFLFMPFIRRCSTQSNLKVRVLASRALTGLVP 1511 (2224)
Q Consensus 1457 PiL~LLSRL~Ps~~~~~~~d~L~~~~F~p~I~rcl~s~~~~VRelAARALasLv~ 1511 (2224)
-+|.+|+++.|.+.. ....+++.+..++++++..||--|++++..+.+
T Consensus 221 ~il~~l~~l~~~~~~-------~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 221 FILDCLSNYNPKDDR-------EAQSICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp HHHHHHHTSCCCSHH-------HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCCCChH-------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 467788888875311 113588899999999999999999999999864
No 54
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=25.13 E-value=5.2e+02 Score=30.50 Aligned_cols=107 Identities=10% Similarity=0.118 Sum_probs=67.1
Q ss_pred HHHHH-hhhhchhhHhHHHHHHHHHHHHH---HHHHHHhhhhhhhhhhhhccccccccccccchHHHHHHHHHHHHHhhc
Q 000103 1825 DRLMS-SYELTRHAKIKESLINCMAICIR---RFANLFTSSILVDARKKTIEISESDHLGRSAHLFACITAFVNIINRHS 1900 (2224)
Q Consensus 1825 ~~l~~-~~~~~~~~~~r~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~lv~~~s 1900 (2224)
..++. +- ...++.+|+.+..++|.+.. .....+... ..+..+++++...
T Consensus 84 ~~Lv~~lL-~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~-------------------------g~l~~Ll~LL~~~- 136 (296)
T 1xqr_A 84 HLLVGRYL-EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL-------------------------GALRKLLRLLDRD- 136 (296)
T ss_dssp HHHHHTTT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT-------------------------THHHHHHHHHHHC-
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC-------------------------CCHHHHHHHHccC-
Confidence 34555 43 34577889999989988543 111111100 2467788888642
Q ss_pred CCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcccccchhhHHHH--HHHHHHHHhhcccCHHHH
Q 000103 1901 SSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQEAGNMYAHQVL--VIWFTCIKLLEDEDDGIR 1978 (2224)
Q Consensus 1901 ~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~W~~~~~LLeDeD~~iR 1978 (2224)
.+.++|..|+-+|... .. ++ . +. .+.++ ..+-.++.+|++.|..+|
T Consensus 137 ---~~~~v~~~A~~ALsnl---~~---------~~-~------------~~----~~~~~~~ggi~~L~~lL~~~d~~v~ 184 (296)
T 1xqr_A 137 ---ACDTVRVKALFAISCL---VR---------EQ-E------------AG----LLQFLRLDGFSVLMRAMQQQVQKLK 184 (296)
T ss_dssp ---SCHHHHHHHHHHHHHH---HT---------TC-H------------HH----HHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred ---CCHHHHHHHHHHHHHH---Hc---------CC-c------------HH----HHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 2478999999998763 00 00 0 00 01111 356788999999999999
Q ss_pred HHHHHHHHhhhh
Q 000103 1979 QRLAIDVQKCFS 1990 (2224)
Q Consensus 1979 ~~~a~~v~~~~~ 1990 (2224)
..++-++..+..
T Consensus 185 ~~A~~aLs~L~~ 196 (296)
T 1xqr_A 185 VKSAFLLQNLLV 196 (296)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988763
No 55
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=24.96 E-value=92 Score=43.22 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=59.7
Q ss_pred cHHHHHHHhCCCC-hHHHHHHHHHhhccCCCC-ChHHHHHHHHHHhhhhcccCCcCccccccCCCCCChhHhHHHHHHHH
Q 000103 1483 FMPFIRRCSTQSN-LKVRVLASRALTGLVPNE-KLPDVLLNIASELLCVEGQNEAAPVSSLRGTHRASFNLIHGILLQLG 1560 (2224)
Q Consensus 1483 F~p~I~rcl~s~~-~~VRelAARALasLv~~~-~i~~~i~~Ll~~L~~~~~~~~~~~~~~~~~~~~~s~N~lHG~LLqi~ 1560 (2224)
....|..++.++. .-||++||.+|+.++.-. .. ..+.+++..+...-.+.+.....- .....+.-..||..|-+.
T Consensus 844 i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~-~~~~~li~~f~~~~~~~~~~~~~~--~~~~~~~~~rH~aVLgL~ 920 (997)
T 1vsy_5 844 ILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEE-QPLLSLIERFAKGLDVNKYTSKER--QKLSKTDIKIHGNVLGLG 920 (997)
T ss_dssp THHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSH-HHHHHHHHHHTTSSTTTSSCHHHH--HHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCch-hhHHHHHHHHHHHHhhcccccccc--cccchHHHHHHHHHHHHH
Confidence 5667888888999 999999999999998665 32 334466665531000000000000 000011258899999999
Q ss_pred HHHHhhccccCcchhhhhhHHHHHHHHhhhcccc
Q 000103 1561 SLLDANCRNLVDFSKKDQILGDLIKVLGNCSWIA 1594 (2224)
Q Consensus 1561 ~LL~~~~~~~~d~~~~~~~~~~l~~~l~~~~wl~ 1594 (2224)
.++...--..+.+ .-+++++..|. .|..
T Consensus 921 AlV~a~Py~vP~P----~w~P~~l~~La--~~~~ 948 (997)
T 1vsy_5 921 AIISAFPYVFPLP----PWIPKNLSNLS--SWAR 948 (997)
T ss_dssp HHHTTCSCCSSCC----THHHHHHHHHH--TTSS
T ss_pred HHHhhCCCCCCCC----cccHHHHHHHH--HHhC
Confidence 9998754333211 24556655554 3454
No 56
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=23.47 E-value=1.5e+03 Score=30.58 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhhchhhhhhcccccccccCCCCCCCCCCCCcccccchhhH-HHHHHHHH
Q 000103 1887 ACITAFVNIINRHSSSSEPVNMRKAATGSIVASGLLEQADLIGSYVSNHQIPSENSSLHFEPQEAGNMYAH-QVLVIWFT 1965 (2224)
Q Consensus 1887 ~~~~~~v~lv~~~s~~~~p~~~R~Aaa~al~~s~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~W~~ 1965 (2224)
++++.||++.. +.-.++|+||+.+|.-. +.. ++ .-+...+.. ..++.|
T Consensus 654 ~rL~lLV~Ll~-----s~D~~~r~AAagALAnL-----ts~------~~-------------~ia~~ll~~~~gi~~L-- 702 (778)
T 3opb_A 654 RNFNILVKLLQ-----LSDVESQRAVAAIFANI-----ATT------IP-------------LIAKELLTKKELIENA-- 702 (778)
T ss_dssp HHHHHHHHGGG-----CSCHHHHHHHHHHHHHH-----HHH------CH-------------HHHHHHTTCHHHHHHH--
T ss_pred ccHHHHHHHHc-----CCCHHHHHHHHHHHHHh-----cCC------Ch-------------HHHHHHHHccccHHHH--
Confidence 35778888773 35679999999888763 110 00 000011111 233444
Q ss_pred HHHhhcc--cCHHHHHHHHHHHHhhh
Q 000103 1966 CIKLLED--EDDGIRQRLAIDVQKCF 1989 (2224)
Q Consensus 1966 ~~~LLeD--eD~~iR~~~a~~v~~~~ 1989 (2224)
+.+|+| +|+++|.+++..+...+
T Consensus 703 -l~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 703 -IQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp -HHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHhccCCCHHHHHHHHHHHHHHH
Confidence 678889 99999999999998887
No 57
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=20.07 E-value=4e+02 Score=36.92 Aligned_cols=65 Identities=12% Similarity=-0.013 Sum_probs=39.9
Q ss_pred HHHHhhcccCHHHHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHHHHhcCchhhHHHHHHHHhc
Q 000103 1965 TCIKLLEDEDDGIRQRLAIDVQKCFSLRRFGSSSHGVPNQVEKVIELSFEHLSSIFGCWIEYFDYLCQWVLV 2036 (2224)
Q Consensus 1965 ~~~~LLeDeD~~iR~~~a~~v~~~~~~~~~~~~~~~vp~q~~~vle~~f~~l~~~f~~~~~y~~~l~~~~~~ 2036 (2224)
.+..|+.|.|+.||+.|+.+...+..-.. ..++.-+...++.--.|++.. |-..-.+|..+.+.|
T Consensus 651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn-----na~~~rva~~l~~L~~~~~dk--~~d~~~~fga~iAqG 715 (963)
T 4ady_A 651 VLDPLTKDPVDFVRQAAMIALSMILIQQT-----EKLNPQVADINKNFLSVITNK--HQEGLAKFGACVAQG 715 (963)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHSTTCC-----TTTCTTHHHHHHHHHHHHHCS--SSCHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhcCCc-----cccchHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHH
Confidence 67888999999999999999988874311 222224455666555554421 112334555666554
Done!