Your job contains 1 sequence.
>000107
MASGSPRTRIDQFYASKKRKSRSPSVKSGRAEKDAKITVEVSPSAKGTLDNYLKNSQDDG
HTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSEV
GCHMKDGSAHIPESLELKQFPTDFLSLYCSEIHSSASSPSEAKLKDHKRHSSPSLLGGED
NKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGFIVKTGNLVPNSSQRVTDSNASLLLQ
ASLRKCDKSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPGEAFWNEAIEIADG
FFAHTDIGPSQIAEGIADSKSQNEINNSYNLRNKNYNKSKEMLNEGDSKVQHIKAGGSLK
QMGKDVIDSVKELSPLPIKHLDFLFEDKNLKGTKPGCGAADTSEAMMFRDGVVSEKGSVT
HKSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDSPTNVIKK
PVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQ
RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRH
VRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG
YLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQ
AALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGH
SVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEE
TLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRD
FIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMT
HAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTK
LYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWEL
YYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITS
NNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVS
VFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAE
ASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAEEARIAAFSAFKSLGL
NVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQISKKVD
LESAGEKLLETSDNELSALVEGGSITELQQKFDAENPPVPFVGPGTGGVEFNVNASEIKI
PDTTLSVQLGKNAIGTITSNRDLDLEVQDRPNRDPCLVNKDRACNKGPINAINASGGFDC
FLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKD
RFLIYGSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQ
RFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKK
RLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELIEALLNIEI
PLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLY
GHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLAR
ISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKIN
ARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSE
DSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAV
SSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSI
IVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLL
VPLLVKIQVGSTWGSLEPFQADNYTNVVPDL
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000107
(2191 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2125677 - symbol:AT4G32700 species:3702 "Arabi... 3990 0. 2
ZFIN|ZDB-GENE-040724-232 - symbol:si:rp71-1p14.5 "si:rp71... 1286 1.6e-183 6
UNIPROTKB|D4A628 - symbol:Polq "Polymerase (DNA directed)... 1247 1.8e-179 7
RGD|1309795 - symbol:Polq "polymerase (DNA directed), the... 1067 4.8e-178 7
UNIPROTKB|O75417 - symbol:POLQ "DNA polymerase theta" spe... 1060 4.1e-177 7
UNIPROTKB|E1BMC0 - symbol:POLQ "Uncharacterized protein" ... 1032 1.8e-175 9
FB|FBgn0002905 - symbol:mus308 "mutagen-sensitive 308" sp... 1240 1.9e-168 4
UNIPROTKB|F1NMU1 - symbol:POLQ "Uncharacterized protein" ... 1071 2.6e-152 3
UNIPROTKB|F1PXD9 - symbol:POLQ "Uncharacterized protein" ... 1015 1.6e-118 4
WB|WBGene00020964 - symbol:polq-1 species:6239 "Caenorhab... 478 2.4e-113 6
UNIPROTKB|D4A2B2 - symbol:Polq "Protein Polq" species:101... 394 9.1e-107 8
MGI|MGI:2176740 - symbol:Helq "helicase, POLQ-like" speci... 755 1.8e-100 2
DICTYBASE|DDB_G0279107 - symbol:DDB_G0279107 "Helicase PO... 500 9.2e-98 6
UNIPROTKB|E3W980 - symbol:HELQ "Helicase POLQ-like" speci... 769 4.1e-96 4
WB|WBGene00021905 - symbol:helq-1 species:6239 "Caenorhab... 612 1.3e-82 2
UNIPROTKB|F1NYH9 - symbol:HELQ "Uncharacterized protein" ... 686 2.4e-78 2
ZFIN|ZDB-GENE-060503-421 - symbol:helq "helicase, POLQ-li... 690 3.5e-77 2
FB|FBgn0002899 - symbol:mus301 "mutagen-sensitive 301" sp... 526 2.3e-76 4
UNIPROTKB|J9P160 - symbol:HELQ "Uncharacterized protein" ... 779 4.6e-74 2
UNIPROTKB|E2RST3 - symbol:HELQ "Uncharacterized protein" ... 779 4.4e-73 2
UNIPROTKB|Q8TDG4 - symbol:HELQ "Helicase POLQ-like" speci... 769 8.4e-73 3
UNIPROTKB|F1RVE2 - symbol:HELQ "Uncharacterized protein" ... 760 2.8e-71 2
UNIPROTKB|E9PT19 - symbol:Helq "Protein Helq" species:101... 671 2.1e-64 1
ZFIN|ZDB-GENE-100917-1 - symbol:poln "polymerase (DNA dir... 643 2.3e-58 5
UNIPROTKB|F1PCT5 - symbol:POLN "Uncharacterized protein" ... 589 2.3e-56 2
UNIPROTKB|F1NCR5 - symbol:POLN "Uncharacterized protein" ... 593 4.1e-56 1
UNIPROTKB|J9NTZ1 - symbol:J9NTZ1 "DNA polymerase" species... 387 3.5e-55 4
UNIPROTKB|E1BDC2 - symbol:POLN "Uncharacterized protein" ... 609 7.4e-55 2
UNIPROTKB|H0YA88 - symbol:POLN "DNA polymerase nu" specie... 580 1.0e-54 1
UNIPROTKB|Q7Z5Q5 - symbol:POLN "DNA polymerase nu" specie... 604 1.1e-54 2
UNIPROTKB|J9JHF4 - symbol:POLN "Uncharacterized protein" ... 595 9.9e-54 2
MGI|MGI:2675617 - symbol:Poln "DNA polymerase N" species:... 585 8.7e-53 2
UNIPROTKB|F1S8R8 - symbol:POLN "Uncharacterized protein" ... 589 3.0e-52 3
UNIPROTKB|F1M178 - symbol:F1M178 "Uncharacterized protein... 573 4.1e-52 2
UNIPROTKB|F1LWX6 - symbol:F1LWX6 "Uncharacterized protein... 568 1.9e-51 2
UNIPROTKB|E9PSY5 - symbol:Helq "Protein Helq" species:101... 505 5.3e-51 2
UNIPROTKB|J9NXC0 - symbol:POLN "Uncharacterized protein" ... 563 3.0e-50 2
DICTYBASE|DDB_G0277749 - symbol:DDB_G0277749 species:4468... 423 1.1e-47 2
TIGR_CMR|BA_4831 - symbol:BA_4831 "DNA polymerase I" spec... 395 1.2e-44 4
TIGR_CMR|CBU_1795 - symbol:CBU_1795 "DNA polymerase I" sp... 360 1.0e-43 2
UNIPROTKB|Q9KVN3 - symbol:VC_0108 "DNA polymerase I" spec... 381 7.2e-43 3
TIGR_CMR|VC_0108 - symbol:VC_0108 "DNA polymerase I" spec... 381 7.2e-43 3
UNIPROTKB|Q3ABL3 - symbol:polA "DNA polymerase" species:2... 383 7.9e-43 3
TIGR_CMR|CHY_1650 - symbol:CHY_1650 "DNA polymerase I" sp... 383 7.9e-43 3
TIGR_CMR|SO_4669 - symbol:SO_4669 "DNA polymerase I" spec... 365 3.4e-42 3
UNIPROTKB|F1M179 - symbol:F1M179 "Uncharacterized protein... 330 6.9e-42 3
TIGR_CMR|DET_1391 - symbol:DET_1391 "DNA-directed DNA pol... 367 7.3e-42 2
UNIPROTKB|P00582 - symbol:polA species:83333 "Escherichia... 379 6.6e-41 2
TIGR_CMR|CPS_4978 - symbol:CPS_4978 "DNA polymerase I" sp... 337 2.3e-40 4
UNIPROTKB|P0A550 - symbol:polA "DNA polymerase I" species... 372 1.1e-36 4
DICTYBASE|DDB_G0274419 - symbol:DDB_G0274419 species:4468... 379 2.4e-36 3
TIGR_CMR|GSU_0541 - symbol:GSU_0541 "DNA polymerase I" sp... 349 1.9e-35 3
UNIPROTKB|Q48PV5 - symbol:polA "DNA polymerase I" species... 343 3.1e-35 2
UNIPROTKB|Q0C2B4 - symbol:polA "DNA polymerase I" species... 339 7.6e-34 2
TIGR_CMR|CJE_0383 - symbol:CJE_0383 "DNA polymerase type ... 266 4.5e-32 3
TIGR_CMR|ECH_0080 - symbol:ECH_0080 "DNA polymerase I" sp... 227 2.5e-30 3
DICTYBASE|DDB_G0282679 - symbol:DDB_G0282679 "DNA polymer... 344 5.2e-28 3
TIGR_CMR|NSE_0675 - symbol:NSE_0675 "DNA polymerase I" sp... 200 3.7e-26 4
UNIPROTKB|E3W982 - symbol:HELQ "Helicase POLQ-like" speci... 323 7.2e-26 3
TIGR_CMR|SPO_3844 - symbol:SPO_3844 "DNA polymerase I" sp... 236 1.6e-25 3
TAIR|locus:2059969 - symbol:AT2G42270 species:3702 "Arabi... 273 2.0e-25 2
TAIR|locus:2037375 - symbol:emb1507 "embryo defective 150... 261 5.3e-23 2
GENEDB_PFALCIPARUM|PF14_0234 - symbol:PF14_0234 "DNA-dire... 191 6.5e-23 5
UNIPROTKB|Q8ILK9 - symbol:PF14_0234 "DNA-directed DNA pol... 191 6.5e-23 5
TIGR_CMR|APH_0001 - symbol:APH_0001 "DNA polymerase I" sp... 222 3.9e-22 3
UNIPROTKB|F1SU44 - symbol:F1SU44 "Uncharacterized protein... 264 7.2e-22 2
ASPGD|ASPL0000051297 - symbol:AN10194 species:162425 "Eme... 271 3.3e-21 4
UNIPROTKB|G3MYJ7 - symbol:SKIV2L2 "Uncharacterized protei... 249 1.2e-20 4
UNIPROTKB|F5H7E2 - symbol:SKIV2L2 "Superkiller viralicidi... 249 2.7e-20 4
CGD|CAL0003794 - symbol:orf19.1335 species:5476 "Candida ... 215 3.7e-20 4
UNIPROTKB|E2RCI5 - symbol:SKIV2L2 "Uncharacterized protei... 249 4.9e-20 4
UNIPROTKB|P42285 - symbol:SKIV2L2 "Superkiller viralicidi... 249 4.9e-20 4
UNIPROTKB|F1SLL6 - symbol:SKIV2L2 "Uncharacterized protei... 249 5.0e-20 4
DICTYBASE|DDB_G0275633 - symbol:DDB_G0275633 "superkiller... 227 5.9e-20 4
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 272 5.9e-20 4
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh... 251 6.0e-20 5
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc... 251 6.0e-20 5
MGI|MGI:1919448 - symbol:Skiv2l2 "superkiller viralicidic... 248 6.2e-20 4
UNIPROTKB|F1LNJ2 - symbol:Ascc3l1 "Protein Ascc3l1" speci... 271 9.6e-20 4
UNIPROTKB|O75643 - symbol:SNRNP200 "U5 small nuclear ribo... 271 1.2e-19 4
ZFIN|ZDB-GENE-081105-64 - symbol:si:ch211-251j10.5 "si:ch... 265 1.2e-19 4
ZFIN|ZDB-GENE-040426-2854 - symbol:skiv2l2 "superkiller v... 243 1.3e-19 4
UNIPROTKB|F1MJX4 - symbol:SKIV2L2 "Uncharacterized protei... 249 1.3e-19 5
UNIPROTKB|F1MAH7 - symbol:F1MAH7 "Uncharacterized protein... 234 5.1e-19 3
UNIPROTKB|G4N3Z7 - symbol:MGG_05900 "Uncharacterized prot... 235 8.2e-19 3
UNIPROTKB|F1RQW4 - symbol:SKIV2L "Uncharacterized protein... 221 1.8e-18 3
UNIPROTKB|F5H7B0 - symbol:SKIV2L "Helicase SKI2W" species... 219 1.9e-18 3
UNIPROTKB|F8VS23 - symbol:SKIV2L "Helicase SKI2W" species... 219 1.9e-18 3
UNIPROTKB|B4DM01 - symbol:SKIV2L "cDNA FLJ57529, highly s... 219 2.2e-18 3
UNIPROTKB|F8VNU1 - symbol:SKIV2L "Helicase SKI2W" species... 219 2.2e-18 3
FB|FBgn0001986 - symbol:l(2)35Df "lethal (2) 35Df" specie... 226 2.8e-18 4
UNIPROTKB|E1BMS0 - symbol:LOC100139548 "Uncharacterized p... 219 2.9e-18 3
UNIPROTKB|E2RSD6 - symbol:SKIV2L "Uncharacterized protein... 219 2.9e-18 3
UNIPROTKB|Q15477 - symbol:SKIV2L "Helicase SKI2W" species... 219 3.7e-18 3
POMBASE|SPAC17H9.02 - symbol:SPAC17H9.02 "TRAMP complex A... 231 4.1e-18 5
UNIPROTKB|F1LP39 - symbol:Skiv2l "Protein Skiv2l" species... 219 5.2e-18 3
RGD|1303059 - symbol:Skiv2l "superkiller viralicidic acti... 219 5.8e-18 3
ZFIN|ZDB-GENE-010430-5 - symbol:skiv2l "superkiller viral... 216 6.1e-18 3
UNIPROTKB|G4NH56 - symbol:MGG_03931 "FRQ-interacting RNA ... 206 6.7e-18 4
FB|FBgn0263599 - symbol:l(3)72Ab "lethal (3) 72Ab" specie... 255 7.0e-18 4
WARNING: Descriptions of 78 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2125677 [details] [associations]
symbol:AT4G32700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA;IGI] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0009640 "photomorphogenesis" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IGI] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00482 SMART:SM00490 GO:GO:0005524
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0009640 GO:GO:0006310 GO:GO:0010468 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:AB192295 IPI:IPI00570534 RefSeq:NP_001078482.1
UniGene:At.48069 ProteinModelPortal:Q588V7 SMR:Q588V7 STRING:Q588V7
PRIDE:Q588V7 EnsemblPlants:AT4G32700.2 GeneID:829406
KEGG:ath:AT4G32700 TAIR:At4g32700 HOGENOM:HOG000030860
PhylomeDB:Q588V7 ProtClustDB:CLSN2698843 Genevestigator:Q588V7
Uniprot:Q588V7
Length = 2154
Score = 3990 (1409.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 849/1405 (60%), Positives = 1006/1405 (71%)
Query: 1 MASGSPRTRIDQFYAXXXXXXXXXXXXXXXAEKDAKITVEVSPSAKGTLDNYLKNSQDDG 60
M S S ++RIDQFY EK+ K+T E SP KGTLD+YLK S DD
Sbjct: 1 MDSDSSKSRIDQFYVSKKRKHQSPNLKSGRNEKNVKVTGERSPGDKGTLDSYLKASLDDK 60
Query: 61 HTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSE- 119
T+ L +R E R L LE+ S + L ++ + + S++ + E
Sbjct: 61 STTNSGLQARQEAFTRKLDLEVSASSVGQNIHPCLPKPVSFATFKECLGQNGSQDLHKEG 120
Query: 120 VGC--HMKDG--SAHIPESLELKQFPTDFLSLYCXXXXXXXXXXXXXKLKDHKRHSSPSL 175
V H DG A+ ++ EL+ F T FLSLYC K + KR SS S
Sbjct: 121 VAAETHATDGLLCANQKDNSELRDFATSFLSLYCSGVQSVVGSPPHQKENELKRRSSSSS 180
Query: 176 LGGEDNKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGFIVKTGNLVPNSSQRVTD--- 232
L +D +I+ K+ C S + S + T E + + GN N + V+D
Sbjct: 181 LA-QDIQISHKRRCESENIPSLDDLTNPLGSKPES-----LARNGN---NRDKPVSDPTK 231
Query: 233 ---SNASLLLQASLRKCDKSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPGEA 289
SN S+ + LRKC K+ +S+ + T +TP S +K+ TPKS CG+S+FSPGEA
Sbjct: 232 KMPSNESVEIPMGLRKCSKAPESSAHLTEFHTPG-SAIKSCPVGTPKSGCGSSMFSPGEA 290
Query: 290 FWNEAIEIADGFFAHTDIGPSQIAEGIADSKSQNEIXXXXXXXXXXXXXXXEMLNEGDSK 349
FWNEAI++ADG + S A+ + D I L+ + +
Sbjct: 291 FWNEAIQVADGLTIPIENFGSVEAK-VRDQHVT--ILSCSKKTDKCTEKLERSLDLDEIR 347
Query: 350 VQHIKAGGSLKQMGKDVIDSVKELSPLPIKHLDFLFEDKNLKG-TKPGCGAADTSEAMMF 408
V+ A G K + K D KE+ LP+K+L+ LF+DKN+ G + C + D + +
Sbjct: 348 VKDKDAIGFSKVVEKHGRDFNKEVYQLPVKNLELLFQDKNINGGIQERCASFDQNNITL- 406
Query: 409 RDGVVSEKGSVTHKSCQKIKFKCHHDNTSRTEGISDVQ----EKDSVLIVHERKLDISSQ 464
+SE V +K C+ + +N +G+ E VL+ E +
Sbjct: 407 GSSRISESAFVGNKGCENLDIA---NNAQADKGLIGKMYPEPEGKKVLLCEENR------ 457
Query: 465 GIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISK 524
G+ S++ S N+ +KPVG+ +S+E+ TPSSS D L LS+WLPSE+CS+Y K+GISK
Sbjct: 458 GVRSVSMIS--NM-RKPVGSSESEESHTPSSSHRNYDGLSLSTWLPSEVCSVYNKKGISK 514
Query: 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584
LYPWQVECL VDGVLQ+RNLVYCASTSAGKSFVAE+LMLRR+I TGKMALLVLPYVSICA
Sbjct: 515 LYPWQVECLQVDGVLQKRNLVYCASTSAGKSFVAEVLMLRRVIRTGKMALLVLPYVSICA 574
Query: 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIG 644
EKAEHLEVLLEPLG+HVRSYYGNQGGG+LPKDTSVAVCTIEKANSL+NR+LEEGRLSE+G
Sbjct: 575 EKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSELG 634
Query: 645 IIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVG 704
IIVIDELHMV DQ+RGY RYAA KADPAHGLQIVG
Sbjct: 635 IIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGSSESSSGESSGTSSGKADPAHGLQIVG 694
Query: 705 MSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKD 764
MSATMPNV AVADWLQAALY+T FRPVPLEEYIKVG+ IY+KKM+VVRTI AA++GGKD
Sbjct: 695 MSATMPNVGAVADWLQAALYQTEFRPVPLEEYIKVGSTIYNKKMEVVRTIPKAADMGGKD 754
Query: 765 PDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAI 824
PDHIVELC+EVVQEG+SVLIFCSSRKGCESTARH+SK +K +NV +SEF+DI SAI
Sbjct: 755 PDHIVELCNEVVQEGNSVLIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAI 814
Query: 825 DALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVN 884
DALRR P+G+DPVLEETLPSGVAYHHAGLTVEERE+VETCYRKGLVRVLTATSTLAAGVN
Sbjct: 815 DALRRSPSGVDPVLEETLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVN 874
Query: 885 LPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNES 944
LPARRVIFRQP IGRDFIDGTRY+QM+GRAGRTGIDTKG+S+LICKP E+K+IM LLNE+
Sbjct: 875 LPARRVIFRQPMIGRDFIDGTRYKQMSGRAGRTGIDTKGDSVLICKPGELKRIMALLNET 934
Query: 945 CPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSL 1004
CPPL SCLSEDKNGMTHAILEVVAGGIVQTA+DIHRYVRCTLLNSTKPFQDVVKSAQDSL
Sbjct: 935 CPPLQSCLSEDKNGMTHAILEVVAGGIVQTAKDIHRYVRCTLLNSTKPFQDVVKSAQDSL 994
Query: 1005 RWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLV 1064
RWLCHRKFLEWNE+TKLY+TTPLGR +FGSSLCPEESLIVLDDL RAREG V+ASDLHLV
Sbjct: 995 RWLCHRKFLEWNEETKLYTTTPLGRGSFGSSLCPEESLIVLDDLLRAREGLVMASDLHLV 1054
Query: 1065 YLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDS 1124
YL TPINV VEP+WELYYERF+ELS L+QSVGN+VGV EP+LMRMAHGA +R ++ +D
Sbjct: 1055 YLVTPINVGVEPNWELYYERFMELSPLEQSVGNRVGVVEPFLMRMAHGATVRTLNRPQDV 1114
Query: 1125 TKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGM 1184
K L G+ + R G TS MLSD Q LRVCKRF+VALILS+LVQE V EVCE FKVARGM
Sbjct: 1115 KKNLRGEYDSRHGSTSMKMLSDEQMLRVCKRFFVALILSKLVQEASVTEVCEAFKVARGM 1174
Query: 1185 VQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRA 1244
VQALQENAGRF+SMVSVFCERLGW+DLEGL+AKFQNRVSFGVRAEIVELT+IPY+KGSRA
Sbjct: 1175 VQALQENAGRFSSMVSVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTSIPYIKGSRA 1234
Query: 1245 RALYKAGLRTPLAIAEASISEIVKALFESSSWIAEA--QRRVQLGVAKKIKNGARKIVLE 1302
RALYKAGLRT AIAEASI EIVKALFESS+W AE QRR+ LG+AKKIKNGARKIVLE
Sbjct: 1235 RALYKAGLRTSQAIAEASIPEIVKALFESSAWAAEGTGQRRIHLGLAKKIKNGARKIVLE 1294
Query: 1303 KAEEARIAAFSAFKSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPM 1362
KAEEAR AAFSAFKSLGL+V + S+P+ + G+E TT D S + P +
Sbjct: 1295 KAEEARAAAFSAFKSLGLDVNELSKPLPLAPASSLNGQE---TT--ERDISRGSVGPDGL 1349
Query: 1363 EHSDKPSLEANQISKKVDLESAGEK 1387
+ S +E + + D+++ EK
Sbjct: 1350 QQS----IEGHMECENFDMDNHREK 1370
Score = 2426 (859.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 473/721 (65%), Positives = 564/721 (78%)
Query: 1470 RPNRDPCLVNKDRACNKGPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLF 1529
R + P NKD KGP+ A N SGGFD FL+ W + EF+FD+HY+K + NS + +
Sbjct: 1440 RNDHIPLSSNKDGTGEKGPVTAGNISGGFDSFLELWGSAGEFFFDLHYNKLQDLNSRISY 1499
Query: 1530 EIHGLAVCWENSPVYYVNLPKDLWS-DHRRKDRFL---IYGSSDKNVLTPEHQLEMIKQR 1585
EIHG+A+CW SPVYYVNL KDL + + K + + + G S+ VL + L++IK R
Sbjct: 1500 EIHGIAICWNCSPVYYVNLNKDLPNLECVEKQKLIEDAVIGKSE--VLASHNMLDVIKSR 1557
Query: 1586 WKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLS 1645
W +I +IM + RKFTWN+KVQIQVLK A+SIQR LNL + E V S+L++
Sbjct: 1558 WNKISKIMGNVNTRKFTWNLKVQIQVLKSPAISIQRCTRLNLP-EGIRDELVDGSWLMMP 1616
Query: 1646 PVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAH 1705
P+H IDM IV WILWPD+ER SNPN++KEVKKRLS EAA AANRSGRW+NQ+RR AH
Sbjct: 1617 PLHTSHTIDMSIVIWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQIRRVAH 1676
Query: 1706 NGCCRRVAQTRALCSVLWKLLVSXXXXXXXXXXXXXXVNVLADMELWGIGVDMEGCLQAR 1765
NGCCRRVAQTRALCS LWK+LVS VNVLADMELWGIG+D+EGCL+AR
Sbjct: 1677 NGCCRRVAQTRALCSALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRAR 1736
Query: 1766 NLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCL 1825
N+L+ KLR LEKKA+ LAGM FSL+ ADIANVL+G LKLPIPE +KGK HPSTDKHCL
Sbjct: 1737 NILRDKLRSLEKKAFELAGMTFSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCL 1796
Query: 1826 DLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLS 1885
DLLR+EHP+VP+IKEHRTLAKLLNCTLGSICSLA++ +STQ+YTLHG WLQTSTATGRLS
Sbjct: 1797 DLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRWLQTSTATGRLS 1856
Query: 1886 MEEPNLQCVEHMVEFKM--SNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIE 1943
+EEPNLQ VEH VEFK+ + D+ +++ D KINARDFF+P+QENW+LL ADYSQIE
Sbjct: 1857 IEEPNLQSVEHEVEFKLDKNGRDV---SSDADRYKINARDFFVPTQENWLLLTADYSQIE 1913
Query: 1944 LRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMG 2003
LRLMAHFS+D +LI LS+P GDVFTMIAA+WTG++EDSV +RDQTKRLIYGILYGMG
Sbjct: 1914 LRLMAHFSRDSSLISKLSQPEGDVFTMIAAKWTGKAEDSVSPHDRDQTKRLIYGILYGMG 1973
Query: 2004 PNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIK 2063
N L+EQL C+S+EAKEKI+SFKSSFP V SWL+ +S C +KGY+++LKGR+RFLSKIK
Sbjct: 1974 ANRLAEQLECTSDEAKEKIRSFKSSFPAVTSWLNETISFCQEKGYIQTLKGRRRFLSKIK 2033
Query: 2064 FGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAAN--FQMLKG 2121
FGN KEKSKAQRQAVNS+CQGSAADIIKIAMINI+S I V SS ++ F MLKG
Sbjct: 2034 FGNAKEKSKAQRQAVNSMCQGSAADIIKIAMINIYSAIAEDVDTAASSSSSETRFHMLKG 2093
Query: 2122 RCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPFQA 2181
RCR+LLQVHDELVLEVDPS +K A L+Q ME+A LLVPL VK++VG TWGSLEPFQ
Sbjct: 2094 RCRILLQVHDELVLEVDPSYVKLAAMLLQTSMENAVSLLVPLHVKLKVGKTWGSLEPFQT 2153
Query: 2182 D 2182
D
Sbjct: 2154 D 2154
Score = 37 (18.1 bits), Expect = 2.2e-253, Sum P(2) = 2.2e-253
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 1396 LSALVEGGSITELQQKF 1412
LS LV+ S+TE+ + F
Sbjct: 1152 LSKLVQEASVTEVCEAF 1168
>ZFIN|ZDB-GENE-040724-232 [details] [associations]
symbol:si:rp71-1p14.5 "si:rp71-1p14.5" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 ZFIN:ZDB-GENE-040724-232 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0003887 EMBL:CU928848
EMBL:CU695000 IPI:IPI00492363 Ensembl:ENSDART00000065556
Uniprot:F1Q4P4
Length = 2576
Score = 1286 (457.8 bits), Expect = 1.6e-183, Sum P(6) = 1.6e-183
Identities = 346/1039 (33%), Positives = 534/1039 (51%)
Query: 415 EKGSVTHKSCQKIKFK-CHHDNTSRTEGI---SDVQEKDSVLIVHERKLDISSQGIDSIT 470
+K S KS QK+ F+ N S+ + + + ++ ++K + +Q + +T
Sbjct: 183 KKTSKVAKSKQKLNFREVTSPNDSKDYILFSPTHMAAAKERSVLQQQKRSLKNQSVSVLT 242
Query: 471 SDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLD---LSSW-LPSEICSIYKKRGISKLY 526
P + +G+ +A G D LD LSSW LP + Y+ G+ +++
Sbjct: 243 P--PPGLDLTVLGDATLSDAAQSIHMGRPADQLDKLLLSSWGLPKPVLEKYQSLGVHRMF 300
Query: 527 PWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEK 586
WQ ECL + VL+ +NLVY A TSAGK+ V+E+L+L+R++ T + A+ +LP+VS+ EK
Sbjct: 301 EWQAECLTLGKVLEGQNLVYSAPTSAGKTLVSELLILKRVLETRQKAMFILPFVSVAREK 360
Query: 587 AEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGII 646
+L+ + + G V Y G+ VAVCTIEKAN LVNR++EE +L +G +
Sbjct: 361 MFYLQNVFQEAGIRVEGYMGSTSAAGGFSALDVAVCTIEKANGLVNRLIEEDKLDLLGTV 420
Query: 647 VIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMS 706
V+DELHMV D RGY RY A G+QI+GMS
Sbjct: 421 VVDELHMVGDSGRGYLLELLLTKIRYIAQKTATRNSGQSTST----------GVQIIGMS 470
Query: 707 ATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPD 766
AT+PN+ +A WL A LY TN+RPVPL E++K+G IY +++VR A + G D D
Sbjct: 471 ATLPNLDLLARWLSAELYSTNYRPVPLMEWVKIGTNIYDGSLNLVRQFTPALPIKGDD-D 529
Query: 767 HIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSK-FLKKFSINVHS-SDSEFIDITSA- 823
HIV LC E VQ+GHS L+FC S+ CE A + + F + S S + I +
Sbjct: 530 HIVSLCFETVQDGHSALLFCPSKNWCEKLADSIGREFYNLHHKEMQSGSGGQSISLNQEG 589
Query: 824 -IDAL---RRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTL 879
+D L +R PAGLD VL+ T+P GVA+HHAGLT +ER+++E +R+G +RVL ATSTL
Sbjct: 590 LLDVLAQLKRTPAGLDHVLQRTVPWGVAFHHAGLTFDERDILEGAFRQGYIRVLAATSTL 649
Query: 880 AAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMG 939
++GVNLPARRVI R P +D Y+QM GRAGR G+DT GES+L+CK E K M
Sbjct: 650 SSGVNLPARRVIIRTPVFNGHLLDILTYKQMVGRAGRKGVDTIGESVLVCKEAERAKGMS 709
Query: 940 LLNESCPPLHSCL-SEDKNGMT----HAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQ 994
L+ S P+ SCL + G+T AILE++ GG+ + +D+ Y CTLL ++ +
Sbjct: 710 LIQGSLKPISSCLVKREGEGVTTSMLRAILEIIVGGVASSPQDVRMYAACTLLAASIAAE 769
Query: 995 DVVKSAQDS--LRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEE--SLIVLDDLSR 1050
+V + +S +EW D + G CP S + LS
Sbjct: 770 EVHQDGSESEARNKGAIEACIEWLMDNEFIHIQKEGDV---ERYCPTHLGSATLSSSLSP 826
Query: 1051 AREGFVLASDLHLVYLSTPINVEVEPDWELYYER---FLELSALDQSVGNQVGVSEPYLM 1107
E + +DL + E D + Y+ +++ + +D + P M
Sbjct: 827 P-EALGIFADLQRAMKGFVL----ENDLHILYQITPVYVDWTTIDWYQFFCLWEQLPSAM 881
Query: 1108 RMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQ 1167
+ A M + + + + GKL + T + + + KRF+ L+L LV
Sbjct: 882 KRV--AEM-VGIQEGFLARSVGGKL---IAKTEKQR----RQMAIHKRFFTTLVLLDLVS 931
Query: 1168 ETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVR 1227
E P+ V + + +RG +Q+LQ++A +A MV+VFC RLGW++LE L+++FQ+R+SFGV+
Sbjct: 932 EEPLGAVAKKYGCSRGQLQSLQQSASTYAGMVTVFCNRLGWHNLELLLSQFQSRLSFGVQ 991
Query: 1228 AEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL-----FESSSW-IAEAQ 1281
E+ +L I + RAR LY +G T +A A ++E+ KAL F+SS + E++
Sbjct: 992 RELCDLVRISLLTAQRARTLYSSGFVTVAELARADVTEVEKALRKAIPFKSSRQAVDESE 1051
Query: 1282 RRVQLGVAKK-IKNGARKIVLEKAEEARIAAFSAF---KSLGLNVPQFSRPILSTATENS 1337
Q + + I +K + E+ +I A + K L L +++ L T+
Sbjct: 1052 VEAQERKSMRCIWVSGKKALTEREAAQQIVAEAQLLLQKDLALLGVEWNPACLPAKTQ-- 1109
Query: 1338 TGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQISKKVDLESAGEKLLETSDNELS 1397
+ ++ T PR+ + EH L N +K+ LE+ +++N
Sbjct: 1110 --PDNSSNTEPRSMSGGT-------EHEGGQDLMLNVTEEKLLLEN------NSNNNSHP 1154
Query: 1398 ALVEGGSITELQQKFDAEN 1416
L S T L++ D ++
Sbjct: 1155 PLRPLESTTNLEKTMDVDS 1173
Score = 477 (173.0 bits), Expect = 1.6e-183, Sum P(6) = 1.6e-183
Identities = 113/270 (41%), Positives = 159/270 (58%)
Query: 1919 INARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGR 1978
++ R F+P ++LA DYSQ+ELR++AH S+D L+ +L+ DVF IAA W
Sbjct: 2306 VSMRHAFVPFSGG-LILAVDYSQLELRILAHLSRDRRLLHVLNSG-ADVFKSIAAEWKMV 2363
Query: 1979 SEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHV 2038
SV R Q K++ YGI+YGMG +L EQ+ N+A I++FKS + G+ ++L
Sbjct: 2364 DPASVDDNMRQQAKQICYGIIYGMGAKSLGEQMGIEENDAACYIETFKSRYNGIQNFLRE 2423
Query: 2039 AVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIH 2098
V C + GYV++L GRKRFL IK N KS A+RQAVN+ QGSAADI+K+A INI
Sbjct: 2424 TVQKCGKNGYVKTLLGRKRFLPGIKDSNVYIKSHAERQAVNTTVQGSAADIVKLATINIQ 2483
Query: 2099 SII---VGGV----YKPDSSLAAN----FQMLKGRCRLLLQVHDELVLEVDPSVIKEAVS 2147
I GV P L F+ L+G +LQ+HDEL+ EV + +
Sbjct: 2484 RRIEEAFPGVPTSHQHPSIRLGGRHRNQFRPLRGGY-FILQLHDELIYEVAEEDVIQVAQ 2542
Query: 2148 LVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177
+V++ MES L V L VK++VG +WG+L+
Sbjct: 2543 IVKREMESVVKLYVKLRVKVKVGPSWGNLQ 2572
Score = 137 (53.3 bits), Expect = 1.6e-183, Sum P(6) = 1.6e-183
Identities = 33/75 (44%), Positives = 45/75 (60%)
Query: 1746 LADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKL 1805
LA +EL GIG + C ++++Q KL LE +AY LAG FSL + D+A VL+ LKL
Sbjct: 2086 LALLELNGIGFSIAECEAQKHVMQAKLSALESQAYQLAGHSFSLTSPEDVAEVLFLELKL 2145
Query: 1806 PIPEGHNKGKQHPST 1820
P P G G ++ T
Sbjct: 2146 P-PNGDLNGLKNKKT 2159
Score = 85 (35.0 bits), Expect = 1.6e-183, Sum P(6) = 1.6e-183
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 1819 STDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTS 1878
ST K L+ L+ HP+ VI E R + L + + + + +H Q+
Sbjct: 2177 STTKDVLEKLKPLHPLPGVILEWRRITNALTKVVFPLQREKKWHSHLKMDRIHPI-SQSH 2235
Query: 1879 TATGRLSMEEPNLQCVEHMVEFKM 1902
TATGR+S EPN+Q V E +M
Sbjct: 2236 TATGRVSFTEPNIQNVPKDFEIQM 2259
Score = 49 (22.3 bits), Expect = 4.1e-49, Sum P(6) = 4.1e-49
Identities = 25/97 (25%), Positives = 42/97 (43%)
Query: 49 LDNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVI 108
L+ + + Q D T K +L H+ RN+ L + + +K + NQ ++KV+
Sbjct: 1397 LEEFGDSFQLDTQTEK--MLHGHDFSHRNVELNVVRENKQD-NQV-------DSTSEKVV 1446
Query: 109 SRCSSKEGNSEVGCHMKDGSAHIPESLELKQ--FPTD 143
+ S E + V G ESL L +PT+
Sbjct: 1447 KQSSFLEKENRVSKEQNKGPF---ESLSLHDNGWPTE 1480
Score = 45 (20.9 bits), Expect = 8.6e-38, Sum P(3) = 8.6e-38
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 364 KDVIDSVKELSPLP 377
KDV++ +K L PLP
Sbjct: 2180 KDVLEKLKPLHPLP 2193
Score = 44 (20.5 bits), Expect = 1.8e-169, Sum P(5) = 1.8e-169
Identities = 20/91 (21%), Positives = 40/91 (43%)
Query: 1567 SSDKNVLT---PEHQLEMIKQRWKRIGEIMEKRDV---RKFTWNMKVQIQVLKHAAVSIQ 1620
S+ K+VL P H L + W+RI + K R+ W+ +++ + + S
Sbjct: 2177 STTKDVLEKLKPLHPLPGVILEWRRITNALTKVVFPLQREKKWHSHLKMDRIHPISQSHT 2236
Query: 1621 RFGGLNLVGTSLGLENVGSSFLLLSPVHLKD 1651
G ++ T ++NV F + P +++
Sbjct: 2237 ATGRVSF--TEPNIQNVPKDFEIQMPTLIEE 2265
Score = 43 (20.2 bits), Expect = 1.6e-183, Sum P(6) = 1.6e-183
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 1533 GLAVCWENSPVYYVNLPKDL 1552
G++V W Y+V+L ++L
Sbjct: 1907 GISVSWGAKDAYFVSLQQEL 1926
Score = 43 (20.2 bits), Expect = 1.4e-47, Sum P(7) = 1.4e-47
Identities = 30/117 (25%), Positives = 45/117 (38%)
Query: 32 EKD-AKITVEVSPS---AKGTLDNYLKN---SQDDG--HTSKQSLLSRHEVVKRNLSLEI 82
+KD A + VE +P+ AK DN S G H Q L+ V + L LE
Sbjct: 1089 QKDLALLGVEWNPACLPAKTQPDNSSNTEPRSMSGGTEHEGGQDLMLN--VTEEKLLLEN 1146
Query: 83 DKYSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSEVGCHMKDGSAH-IPESLELK 138
+ + L + T V S SS E + C ++ H + +S+ K
Sbjct: 1147 NSNNNSHPPLRPLESTTNLEKTMDVDSGVSSAECQPDKKCELQSSVLHKVLKSINAK 1203
Score = 42 (19.8 bits), Expect = 1.6e-183, Sum P(6) = 1.6e-183
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 1322 VPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQISKKVDL 1381
VP+ + A + E T ++SSSF+F ++S ++E +D
Sbjct: 1504 VPEEEQCANKPAEQRENNESSDHVTDNSFNRSSSFLFDSLYDNSILDAME----EAAIDQ 1559
Query: 1382 ESAGEKLLETSDN 1394
++ G++ E N
Sbjct: 1560 DNKGDQEAEVKVN 1572
Score = 42 (19.8 bits), Expect = 2.4e-36, Sum P(3) = 2.4e-36
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 1847 LLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNL 1891
LL C + C S+ + Y LH +Q+ + +S+ + L
Sbjct: 546 LLFCPSKNWCEKLADSIGREFYNLHHKEMQSGSGGQSISLNQEGL 590
Score = 38 (18.4 bits), Expect = 5.3e-183, Sum P(6) = 5.3e-183
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 1556 HRRKDRFLIYGSSDKNVL 1573
++RKD FL+ G D V+
Sbjct: 1889 NKRKDGFLLKGYEDLVVI 1906
Score = 38 (18.4 bits), Expect = 4.6e-124, Sum P(3) = 4.6e-124
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 2130 HDELVLEVDPSVIKEAVSLVQ 2150
H ++E + V++EAVSL +
Sbjct: 1694 HSNSLVEPNAVVLEEAVSLTK 1714
Score = 38 (18.4 bits), Expect = 8.2e-41, Sum P(3) = 8.2e-41
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYT 1781
V+ D EL +G G L LL K+RY+ +K T
Sbjct: 420 VVVD-ELHMVGDSGRGYLL--ELLLTKIRYIAQKTAT 453
Score = 37 (18.1 bits), Expect = 1.4e-47, Sum P(7) = 1.4e-47
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 750 VVRTILTAANLGGK--DPDHIVELCDEVVQEGHSVLIFCSS 788
V+ +L + N K D + VE E +Q +S L C S
Sbjct: 1192 VLHKVLKSINAKDKGCDNNQTVESSSESLQRRNSCLNTCIS 1232
>UNIPROTKB|D4A628 [details] [associations]
symbol:Polq "Polymerase (DNA directed), theta (Predicted),
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
GO:GO:0003887 GO:GO:0043142 CTD:10721 KO:K02349 OrthoDB:EOG42RD6C
EMBL:CH473967 IPI:IPI00949142 RefSeq:NP_001099348.1
UniGene:Rn.131176 Ensembl:ENSRNOT00000063995 GeneID:288079
KEGG:rno:288079 NextBio:627549 Uniprot:D4A628
Length = 2547
Score = 1247 (444.0 bits), Expect = 1.8e-179, Sum P(7) = 1.8e-179
Identities = 327/902 (36%), Positives = 480/902 (53%)
Query: 501 DCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAE 559
D L L++W LP + Y G+ K++ WQ ECL + VL+ +NLVY A TSAGK+ VAE
Sbjct: 68 DQLLLANWGLPKAVLEKYHNFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAE 127
Query: 560 ILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619
+L+L+R++ T K AL +LP+VS+ EK +L+ L + +G V Y G+ V
Sbjct: 128 LLILKRVLETRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPTGRFSSLDV 187
Query: 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXX 679
AVCTIE+AN L+NR++EE ++ +G +V+DELHM+ D +RGY +
Sbjct: 188 AVCTIERANGLINRLIEENKMDLLGTVVVDELHMLGDSHRGYLLELLLTKVCFVTRKSAS 247
Query: 680 XXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKV 739
A +QIVGMSAT+PN+ VA WL A LY T+FRPVPL E IKV
Sbjct: 248 CQADSASAL--------ACAVQIVGMSATLPNLQLVASWLNAELYHTDFRPVPLLESIKV 299
Query: 740 GNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV 799
GN+IY M +VR + G D DHIV LC E V++ HSVL+FC S+K CE A +
Sbjct: 300 GNSIYDSSMKLVREFQPLLQVKG-DEDHIVSLCYETVRDNHSVLVFCPSKKWCEKVADII 358
Query: 800 SKFLKKFSINVHSS------DSEF----ID---ITSAIDALRRCPAGLDPVLEETLPSGV 846
++ +F N+H SEF +D + ID L+R P+GLD VL+ T+P GV
Sbjct: 359 AR---EF-YNLHHQPEGLVKSSEFPPVILDQKSLLEVIDQLKRSPSGLDSVLKNTVPWGV 414
Query: 847 AYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTR 906
A+HHAGLT EER+++E +R+GL+RVL ATSTL++GVNLPARRVI R P G +D
Sbjct: 415 AFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPVFGGQPLDILT 474
Query: 907 YRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLS---EDKNGMTHAI 963
Y+QM GRAGR G+DT GES+L+CK E K + LL S P+HSCL E + M AI
Sbjct: 475 YKQMVGRAGRKGVDTMGESILVCKNSEKSKGIALLQGSLEPVHSCLQSQGEVTSTMIRAI 534
Query: 964 LEVVAGGIVQTAEDIHRYVRCTLL-----NSTKPFQ----DVVKSAQDS-LRWLCHRKFL 1013
LE++ G+ T++D+ Y CT L + Q DV + A D+ + WL +F+
Sbjct: 535 LEIIVSGVASTSQDMQTYAACTFLAADVKEGKQGIQRNRDDVQRGAVDACVTWLLENEFI 594
Query: 1014 EWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVE 1073
+ E + GS+ SL D L + L + L +++
Sbjct: 595 QAAEPSDGTGGKVYHPTHLGSATL-SSSLSPTDTLDIFAD---LQRAMKGFVLENDLHIV 650
Query: 1074 --VEP---DWEL--YYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMR-ISSKLRDST 1125
V P DW +Y F L S+ V+E L+ + G R + K+ T
Sbjct: 651 YLVTPVFEDWTSIDWYRFFCLWEKLPTSMKR---VAE--LVGVEEGFLARCVKGKVVART 705
Query: 1126 KGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMV 1185
+ H + + + KRF+ +L+L L+ E P+ E+ + + RG +
Sbjct: 706 ERQH------------------RQMAIHKRFFTSLVLLDLISEIPLKEINQKYGCNRGQI 747
Query: 1186 QALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRAR 1245
Q+LQ++A +A M++VF RLGW+++E L+++FQ R++FG++ E+ +L + + RAR
Sbjct: 748 QSLQQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLIRVSSLNAQRAR 807
Query: 1246 ALYKAGLRTPLAIAEASISEIVKAL-----FESS-------SWIAEAQRRVQ-LGVAKKI 1292
LY +G T +A A E+ AL F+S+ AE +R ++ + VA K
Sbjct: 808 FLYASGFLTVADLARADTVEVEAALKDALPFKSARKAVDEEEEAAEERRSMRTIWVAGKS 867
Query: 1293 KNGARKIVLEKAEEARIAAFSAFKSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDK 1352
+ AR+ EEA++ +G+ S P+ S+ ++G E T K
Sbjct: 868 LS-AREAAALIVEEAKVILQQDLIEMGVQWGPHS-PLSSSTHSLTSGSEVKEHTFKSQTK 925
Query: 1353 SS 1354
SS
Sbjct: 926 SS 927
Score = 394 (143.8 bits), Expect = 1.8e-179, Sum P(7) = 1.8e-179
Identities = 80/179 (44%), Positives = 116/179 (64%)
Query: 1919 INARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGR 1978
++ R F+P ++LAADYSQ+ELR++AH S+D LI +L+ DVF IAA W
Sbjct: 2269 VSMRHAFVPFPGG-LILAADYSQLELRILAHLSRDCRLIQVLNSG-ADVFRSIAAEWKMI 2326
Query: 1979 SEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHV 2038
D+VG R Q K++ YGI+YGMG +L EQ+ N+A I SFKS + G+ ++
Sbjct: 2327 EPDAVGDNLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYKGINHFMRD 2386
Query: 2039 AVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINI 2097
V +C + G+VE++ GR+R+L IK N K+ A+RQA+N+ QGSAADI+K+A +NI
Sbjct: 2387 TVKNCRRDGFVETILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKVATVNI 2445
Score = 130 (50.8 bits), Expect = 1.8e-179, Sum P(7) = 1.8e-179
Identities = 32/68 (47%), Positives = 41/68 (60%)
Query: 1746 LADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKL 1805
LA +EL GIG C ++++Q KL +E +AY LAG FS +A DIA VL+ LKL
Sbjct: 2043 LALLELNGIGFSTAECETQKHIMQAKLDAIETQAYQLAGHSFSFTSADDIAQVLFLELKL 2102
Query: 1806 PIPEGHNK 1813
P P G K
Sbjct: 2103 P-PNGEMK 2109
Score = 113 (44.8 bits), Expect = 1.8e-179, Sum P(7) = 1.8e-179
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 2108 PDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKI 2167
P + F ++G +LQ+HDEL+ EV + + +V+ ME A L V L VK+
Sbjct: 2475 PKRKVKGMFCPMRGGF-FILQLHDELLYEVAEEDVVQVAQIVKNEMECAIKLSVKLKVKV 2533
Query: 2168 QVGSTWGSLEPF 2179
++G++WG L+ F
Sbjct: 2534 KIGASWGELKDF 2545
Score = 83 (34.3 bits), Expect = 1.8e-179, Sum P(7) = 1.8e-179
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 1819 STDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTS 1878
ST K L+ L+ HP+ +I E R ++ + + + ++ + ++ Q+
Sbjct: 2137 STSKDILNKLKDLHPLPGLILEWRRISNAITKVVFPLQREKHLNPFLRMERIYPV-SQSH 2195
Query: 1879 TATGRLSMEEPNLQCVEHMVEFKM 1902
TATGR++ EPN+Q V E KM
Sbjct: 2196 TATGRITFTEPNIQNVPRDFEIKM 2219
Score = 61 (26.5 bits), Expect = 1.8e-179, Sum P(7) = 1.8e-179
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 1533 GLAVCWENSPVYYVNLPKD 1551
GLAVCW YY++L K+
Sbjct: 1861 GLAVCWGGKDAYYLSLQKE 1879
Score = 54 (24.1 bits), Expect = 5.0e-49, Sum P(6) = 5.0e-49
Identities = 23/102 (22%), Positives = 40/102 (39%)
Query: 34 DAKITVEVSPSAKGTLDNYLKNSQDDGHTSKQSL-LSRHEVVKRNLSLEI-DKYSKDEKN 91
+A + E A G +N L + TS + + H V + D D ++
Sbjct: 1253 EAPQSSEALGQAGGQCENLLNSPGIQEKTSAHATNKTEHSHVANQAFCDFGDSLYLDTQS 1312
Query: 92 QALLSDQAQPQATQKVISRCSSKEGNSEVG-CHMKDGSAHIP 132
+ ++ A ATQ + ++EG++ H G HIP
Sbjct: 1313 EEIIEQMATKNATQGAEAAGITEEGSATQNEPHSTTGGQHIP 1354
Score = 50 (22.7 bits), Expect = 1.8e-179, Sum P(7) = 1.8e-179
Identities = 22/99 (22%), Positives = 40/99 (40%)
Query: 1316 KSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQI 1375
++LG N + P S A + G+ E +P + +S EHS +
Sbjct: 1243 QALGTNAGRTEAPQSSEALGQAGGQCENLLNSPGIQEKTSAHATNKTEHSHVANQAFCDF 1302
Query: 1376 SKKVDLESAGEKLLE-------TSDNELSALVEGGSITE 1407
+ L++ E+++E T E + + E GS T+
Sbjct: 1303 GDSLYLDTQSEEIIEQMATKNATQGAEAAGITEEGSATQ 1341
Score = 48 (22.0 bits), Expect = 2.0e-48, Sum P(6) = 2.0e-48
Identities = 26/100 (26%), Positives = 37/100 (37%)
Query: 189 CVSNLLQSGEQT-TCSNAKNIEETQSGFIVKTGNLVPNSSQRVTDSNASLLLQASLRKCD 247
C+ N S +QT TC+ K + E Q+G + V S +T L S
Sbjct: 1186 CLEN--HSEKQTNTCTRQKTLTEGQAGI-----SHVTRGSNDLTPIRCERLKLNSKEHDS 1238
Query: 248 KSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPG 287
L T A T P + + + C N + SPG
Sbjct: 1239 NPCPQALGTNAGRTEAPQSSEALGQAGGQ--CENLLNSPG 1276
Score = 46 (21.3 bits), Expect = 7.5e-36, Sum P(4) = 7.5e-36
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 364 KDVIDSVKELSPLP 377
KD+++ +K+L PLP
Sbjct: 2140 KDILNKLKDLHPLP 2153
Score = 42 (19.8 bits), Expect = 3.0e-121, Sum P(2) = 3.0e-121
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 2143 KEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPFQADNYT 2185
+EA +L+ +E A ++L L I++G WG P + ++
Sbjct: 871 REAAALI---VEEAKVILQQDL--IEMGVQWGPHSPLSSSTHS 908
Score = 41 (19.5 bits), Expect = 9.9e-48, Sum P(6) = 9.9e-48
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 1463 LDLEVQDRPNRDPCLVNKDRACNKGPINAINAS 1495
LDL + + P ++ +N+ CN+G I ++ S
Sbjct: 725 LDL-ISEIPLKE---INQKYGCNRGQIQSLQQS 753
Score = 38 (18.4 bits), Expect = 4.6e-177, Sum P(7) = 4.6e-177
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 1498 FDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSP 1542
F F+ W+ F + +K + + S I G + NSP
Sbjct: 1796 FQTFVKEWQCQKRFSISLACEKMTSSTSSKTATIGG-RLKQVNSP 1839
Score = 37 (18.1 bits), Expect = 1.2e-47, Sum P(7) = 1.2e-47
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 836 PVLEETLPSGVAYHHAGLTVEEREVVE 862
P L SG A H+ + + VVE
Sbjct: 1118 PCLRRKPESGAAVDHSVAVSQNKNVVE 1144
Score = 37 (18.1 bits), Expect = 1.2e-47, Sum P(7) = 1.2e-47
Identities = 13/69 (18%), Positives = 27/69 (39%)
Query: 433 HDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDS----PTNVIKKPVGNEKSD 488
HD ++ + + EK + ++ L GI +T S P + + +++ D
Sbjct: 1178 HDTHPVSQCLENHSEKQTNTCTRQKTLTEGQAGISHVTRGSNDLTPIRCERLKLNSKEHD 1237
Query: 489 EAGTPSSSG 497
P + G
Sbjct: 1238 SNPCPQALG 1246
>RGD|1309795 [details] [associations]
symbol:Polq "polymerase (DNA directed), theta" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003887 OMA:CFSDESI IPI:IPI00362354
Ensembl:ENSRNOT00000034841 UCSC:RGD:1309795 Uniprot:D4ABI8
Length = 2540
Score = 1067 (380.7 bits), Expect = 4.8e-178, Sum P(7) = 4.8e-178
Identities = 235/541 (43%), Positives = 322/541 (59%)
Query: 501 DCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAE 559
D L L++W LP + Y G+ K++ WQ ECL + VL+ +NLVY A TSAGK+ VAE
Sbjct: 68 DQLLLANWGLPKAVLEKYHNFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAE 127
Query: 560 ILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619
+L+L+R++ T K AL +LP+VS+ EK +L+ L + +G V Y G+ V
Sbjct: 128 LLILKRVLETRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPTGRFSSLDV 187
Query: 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXX 679
AVCTIE+AN L+NR++EE ++ +G +V+DELHM+ D +RGY +
Sbjct: 188 AVCTIERANGLINRLIEENKMDLLGTVVVDELHMLGDSHRGYLLELLLTKVCFVTRKSAS 247
Query: 680 XXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKV 739
A +QIVGMSAT+PN+ VA WL A LY T+FRPVPL E IKV
Sbjct: 248 CQADSASAL--------ACAVQIVGMSATLPNLQLVASWLNAELYHTDFRPVPLLESIKV 299
Query: 740 GNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV 799
GN+IY M +VR + G D DHIV LC E V++ HSVL+FC S+K CE A +
Sbjct: 300 GNSIYDSSMKLVREFQPLLQVKG-DEDHIVSLCYETVRDNHSVLVFCPSKKWCEKVADII 358
Query: 800 SKFLKKFSINVHSS------DSEF----ID---ITSAIDALRRCPAGLDPVLEETLPSGV 846
++ +F N+H SEF +D + ID L+R P+GLD VL+ T+P GV
Sbjct: 359 AR---EF-YNLHHQPEGLVKSSEFPPVILDQKSLLEVIDQLKRSPSGLDSVLKNTVPWGV 414
Query: 847 AYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTR 906
A+HHAGLT EER+++E +R+GL+RVL ATSTL++GVNLPARRVI R P G +D
Sbjct: 415 AFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPVFGGQPLDILT 474
Query: 907 YRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLS---EDKNGMTHAI 963
Y+QM GRAGR G+DT GES+L+CK E K + LL S P+HSCL E + M AI
Sbjct: 475 YKQMVGRAGRKGVDTMGESILVCKNSEKSKGIALLQGSLEPVHSCLQSQGEVTSTMIRAI 534
Query: 964 LEVVAGGIVQTAEDIHRYVRCTLL-----NSTKPFQ----DVVKSAQDS-LRWLCHRKFL 1013
LE++ G+ T++D+ Y CT L + Q DV + A D+ + WL +F+
Sbjct: 535 LEIIVSGVASTSQDMQTYAACTFLAADVKEGKQGIQRNRDDVQRGAVDACVTWLLENEFI 594
Query: 1014 E 1014
+
Sbjct: 595 Q 595
Score = 394 (143.8 bits), Expect = 4.8e-178, Sum P(7) = 4.8e-178
Identities = 80/179 (44%), Positives = 116/179 (64%)
Query: 1919 INARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGR 1978
++ R F+P ++LAADYSQ+ELR++AH S+D LI +L+ DVF IAA W
Sbjct: 2262 VSMRHAFVPFPGG-LILAADYSQLELRILAHLSRDCRLIQVLNSG-ADVFRSIAAEWKMI 2319
Query: 1979 SEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHV 2038
D+VG R Q K++ YGI+YGMG +L EQ+ N+A I SFKS + G+ ++
Sbjct: 2320 EPDAVGDNLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYKGINHFMRD 2379
Query: 2039 AVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINI 2097
V +C + G+VE++ GR+R+L IK N K+ A+RQA+N+ QGSAADI+K+A +NI
Sbjct: 2380 TVKNCRRDGFVETILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKVATVNI 2438
Score = 237 (88.5 bits), Expect = 4.8e-178, Sum P(7) = 4.8e-178
Identities = 65/212 (30%), Positives = 113/212 (53%)
Query: 1156 FYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLI 1215
F+ +L+L L+ E P+ E+ + + RG +Q+LQ++A +A M++VF RLGW+++E L+
Sbjct: 720 FFTSLVLLDLISEIPLKEINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLL 779
Query: 1216 AKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL----- 1270
++FQ R++FG++ E+ +L + + RAR LY +G T +A A E+ AL
Sbjct: 780 SQFQKRLTFGIQRELCDLIRVSSLNAQRARFLYASGFLTVADLARADTVEVEAALKDALP 839
Query: 1271 FESS-------SWIAEAQRRVQ-LGVAKKIKNGARKIVLEKAEEARIAAFSAFKSLGLNV 1322
F+S+ AE +R ++ + VA K + AR+ EEA++ +G+
Sbjct: 840 FKSARKAVDEEEEAAEERRSMRTIWVAGKSLS-AREAAALIVEEAKVILQQDLIEMGVQW 898
Query: 1323 PQFSRPILSTATENSTGEEEAATTAPRNDKSS 1354
S P+ S+ ++G E T KSS
Sbjct: 899 GPHS-PLSSSTHSLTSGSEVKEHTFKSQTKSS 929
Score = 130 (50.8 bits), Expect = 4.8e-178, Sum P(7) = 4.8e-178
Identities = 32/68 (47%), Positives = 41/68 (60%)
Query: 1746 LADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKL 1805
LA +EL GIG C ++++Q KL +E +AY LAG FS +A DIA VL+ LKL
Sbjct: 2036 LALLELNGIGFSTAECETQKHIMQAKLDAIETQAYQLAGHSFSFTSADDIAQVLFLELKL 2095
Query: 1806 PIPEGHNK 1813
P P G K
Sbjct: 2096 P-PNGEMK 2102
Score = 113 (44.8 bits), Expect = 4.8e-178, Sum P(7) = 4.8e-178
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 2108 PDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKI 2167
P + F ++G +LQ+HDEL+ EV + + +V+ ME A L V L VK+
Sbjct: 2468 PKRKVKGMFCPMRGGF-FILQLHDELLYEVAEEDVVQVAQIVKNEMECAIKLSVKLKVKV 2526
Query: 2168 QVGSTWGSLEPF 2179
++G++WG L+ F
Sbjct: 2527 KIGASWGELKDF 2538
Score = 83 (34.3 bits), Expect = 4.8e-178, Sum P(7) = 4.8e-178
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 1819 STDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTS 1878
ST K L+ L+ HP+ +I E R ++ + + + ++ + ++ Q+
Sbjct: 2130 STSKDILNKLKDLHPLPGLILEWRRISNAITKVVFPLQREKHLNPFLRMERIYPV-SQSH 2188
Query: 1879 TATGRLSMEEPNLQCVEHMVEFKM 1902
TATGR++ EPN+Q V E KM
Sbjct: 2189 TATGRITFTEPNIQNVPRDFEIKM 2212
Score = 61 (26.5 bits), Expect = 4.8e-178, Sum P(7) = 4.8e-178
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 1533 GLAVCWENSPVYYVNLPKD 1551
GLAVCW YY++L K+
Sbjct: 1854 GLAVCWGGKDAYYLSLQKE 1872
Score = 54 (24.1 bits), Expect = 4.9e-49, Sum P(6) = 4.9e-49
Identities = 23/102 (22%), Positives = 40/102 (39%)
Query: 34 DAKITVEVSPSAKGTLDNYLKNSQDDGHTSKQSL-LSRHEVVKRNLSLEI-DKYSKDEKN 91
+A + E A G +N L + TS + + H V + D D ++
Sbjct: 1246 EAPQSSEALGQAGGQCENLLNSPGIQEKTSAHATNKTEHSHVANQAFCDFGDSLYLDTQS 1305
Query: 92 QALLSDQAQPQATQKVISRCSSKEGNSEVG-CHMKDGSAHIP 132
+ ++ A ATQ + ++EG++ H G HIP
Sbjct: 1306 EEIIEQMATKNATQGAEAAGITEEGSATQNEPHSTTGGQHIP 1347
Score = 50 (22.7 bits), Expect = 1.6e-158, Sum P(7) = 1.6e-158
Identities = 22/99 (22%), Positives = 40/99 (40%)
Query: 1316 KSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQI 1375
++LG N + P S A + G+ E +P + +S EHS +
Sbjct: 1236 QALGTNAGRTEAPQSSEALGQAGGQCENLLNSPGIQEKTSAHATNKTEHSHVANQAFCDF 1295
Query: 1376 SKKVDLESAGEKLLE-------TSDNELSALVEGGSITE 1407
+ L++ E+++E T E + + E GS T+
Sbjct: 1296 GDSLYLDTQSEEIIEQMATKNATQGAEAAGITEEGSATQ 1334
Score = 48 (22.0 bits), Expect = 2.0e-48, Sum P(6) = 2.0e-48
Identities = 26/100 (26%), Positives = 37/100 (37%)
Query: 189 CVSNLLQSGEQT-TCSNAKNIEETQSGFIVKTGNLVPNSSQRVTDSNASLLLQASLRKCD 247
C+ N S +QT TC+ K + E Q+G + V S +T L S
Sbjct: 1179 CLEN--HSEKQTNTCTRQKTLTEGQAGI-----SHVTRGSNDLTPIRCERLKLNSKEHDS 1231
Query: 248 KSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPG 287
L T A T P + + + C N + SPG
Sbjct: 1232 NPCPQALGTNAGRTEAPQSSEALGQAGGQ--CENLLNSPG 1269
Score = 46 (21.3 bits), Expect = 7.4e-36, Sum P(4) = 7.4e-36
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 364 KDVIDSVKELSPLP 377
KD+++ +K+L PLP
Sbjct: 2133 KDILNKLKDLHPLP 2146
Score = 42 (19.8 bits), Expect = 3.4e-100, Sum P(3) = 3.4e-100
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 2143 KEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPFQADNYT 2185
+EA +L+ +E A ++L L I++G WG P + ++
Sbjct: 873 REAAALI---VEEAKVILQQDL--IEMGVQWGPHSPLSSSTHS 910
Score = 41 (19.5 bits), Expect = 1.4e-157, Sum P(7) = 1.4e-157
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 1463 LDLEVQDRPNRDPCLVNKDRACNKGPINAINAS 1495
LDL + + P ++ +N+ CN+G I ++ S
Sbjct: 727 LDL-ISEIPLKE---INQKYGCNRGQIQSLQQS 755
Score = 38 (18.4 bits), Expect = 1.2e-175, Sum P(7) = 1.2e-175
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 1498 FDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSP 1542
F F+ W+ F + +K + + S I G + NSP
Sbjct: 1789 FQTFVKEWQCQKRFSISLACEKMTSSTSSKTATIGG-RLKQVNSP 1832
Score = 37 (18.1 bits), Expect = 4.3e-101, Sum P(2) = 4.3e-101
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 963 ILEVVAGGIVQTAEDIHRYVRCTLLNSTK 991
+ EV +VQ A+ + + C + S K
Sbjct: 2493 LYEVAEEDVVQVAQIVKNEMECAIKLSVK 2521
Score = 37 (18.1 bits), Expect = 1.2e-47, Sum P(7) = 1.2e-47
Identities = 13/69 (18%), Positives = 27/69 (39%)
Query: 433 HDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDS----PTNVIKKPVGNEKSD 488
HD ++ + + EK + ++ L GI +T S P + + +++ D
Sbjct: 1171 HDTHPVSQCLENHSEKQTNTCTRQKTLTEGQAGISHVTRGSNDLTPIRCERLKLNSKEHD 1230
Query: 489 EAGTPSSSG 497
P + G
Sbjct: 1231 SNPCPQALG 1239
>UNIPROTKB|O75417 [details] [associations]
symbol:POLQ "DNA polymerase theta" species:9606 "Homo
sapiens" [GO:0006260 "DNA replication" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271
Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194
SMART:SM00482 SMART:SM00490 GO:GO:0005524 GO:GO:0005654
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098
EMBL:AC069239 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 GO:GO:0008026 GO:GO:0003887 GO:GO:0043142
EMBL:AF052573 EMBL:AY338826 EMBL:AC079841 EMBL:AF043628
IPI:IPI00794779 IPI:IPI01012356 RefSeq:NP_955452.3
UniGene:Hs.241517 ProteinModelPortal:O75417 STRING:O75417
PhosphoSite:O75417 PaxDb:O75417 PRIDE:O75417 DNASU:10721
Ensembl:ENST00000264233 GeneID:10721 KEGG:hsa:10721 UCSC:uc003eed.3
UCSC:uc003eee.4 CTD:10721 GeneCards:GC03M121150 H-InvDB:HIX0030706
HGNC:HGNC:9186 HPA:HPA048931 MIM:604419 neXtProt:NX_O75417
PharmGKB:PA33506 HOGENOM:HOG000146444 HOVERGEN:HBG005525 KO:K02349
OrthoDB:EOG42RD6C ChEMBL:CHEMBL6025 GenomeRNAi:10721 NextBio:40701
ArrayExpress:O75417 Bgee:O75417 CleanEx:HS_POLH CleanEx:HS_POLQ
Genevestigator:O75417 GermOnline:ENSG00000051341 Uniprot:O75417
Length = 2590
Score = 1060 (378.2 bits), Expect = 4.1e-177, Sum P(7) = 4.1e-177
Identities = 241/588 (40%), Positives = 339/588 (57%)
Query: 462 SSQGIDSITSDS--PTNVIKKPVGNE---KSDEAGT--PSSSGMLKDCLDLSSW-LPSEI 513
S G DS S +V+ P G K+ AG P+ +D L L++W LP +
Sbjct: 21 SGSGGDSSASPQFLSGSVLSPPPGLGRCLKAAAAGECKPTVPDYERDKLLLANWGLPKAV 80
Query: 514 CSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMA 573
Y G+ K++ WQ ECL + VL+ +NLVY A TSAGK+ VAE+L+L+R++ K A
Sbjct: 81 LEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKA 140
Query: 574 LLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNR 633
L +LP+VS+ EK +L+ L + +G V Y G+ +AVCTIE+AN L+NR
Sbjct: 141 LFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINR 200
Query: 634 MLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXK 693
++EE ++ +G++V+DELHM+ D +RGY Y
Sbjct: 201 LIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSL----- 255
Query: 694 ADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++ +QIVGMSAT+PN+ VA WL A LY T+FRPVPL E +KVGN+IY M +VR
Sbjct: 256 ---SNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGNSIYDSSMKLVRE 312
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN---- 809
+ G D DH+V LC E + + HSVL+FC S+K CE A +++
Sbjct: 313 FEPMLQVKG-DEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGL 371
Query: 810 VHSSDS-----EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETC 864
V S+ E ++ +D LRR P+GLD VL++T+P GVA+HHAGLT EER+++E
Sbjct: 372 VKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGA 431
Query: 865 YRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGE 924
+R+GL+RVL ATSTL++GVNLPARRVI R P G +D Y+QM GRAGR G+DT GE
Sbjct: 432 FRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKGVDTVGE 491
Query: 925 SMLICKPEEVKKIMGLLNESCPPLHSCLS----EDKNG-MTHAILEVVAGGIVQTAEDIH 979
S+LICK E K + LL S P+ SCL E+ G M AILE++ GG+ T++D+H
Sbjct: 492 SILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMH 551
Query: 980 RYVRCTLLN-STKPFQDVVKSAQDSLR---------WLCHRKFLEWNE 1017
Y CT L S K + ++ Q+S++ WL +F++ E
Sbjct: 552 TYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFIQSTE 599
Score = 390 (142.3 bits), Expect = 4.1e-177, Sum P(7) = 4.1e-177
Identities = 83/179 (46%), Positives = 115/179 (64%)
Query: 1919 INARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGR 1978
I+ R F+P IL AADYSQ+ELR++AH S D LI +L+ DVF IAA W
Sbjct: 2312 ISMRHAFVPFPGGSIL-AADYSQLELRILAHLSHDRRLIQVLNTG-ADVFRSIAAEWKMI 2369
Query: 1979 SEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHV 2038
+SVG R Q K++ YGI+YGMG +L EQ+ N+A I SFKS + G+ ++
Sbjct: 2370 EPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTE 2429
Query: 2039 AVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINI 2097
V +C + G+V+++ GR+R+L IK N K+ A+RQA+N+I QGSAADI+KIA +NI
Sbjct: 2430 TVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNI 2488
Score = 247 (92.0 bits), Expect = 4.1e-177, Sum P(7) = 4.1e-177
Identities = 46/135 (34%), Positives = 87/135 (64%)
Query: 1150 LRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWY 1209
+ + KRF+ +L+L L+ E P+ E+ + + RG +Q+LQ++A +A M++VF RLGW+
Sbjct: 713 MAIHKRFFTSLVLLDLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWH 772
Query: 1210 DLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKA 1269
++E L+++FQ R++FG++ E+ +L + + RAR LY +G T +A A+I E V+
Sbjct: 773 NMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADLARANIVE-VEV 831
Query: 1270 LFESSSWIAEAQRRV 1284
+ +++ A++ V
Sbjct: 832 ILKNAVPFKSARKAV 846
Score = 240 (89.5 bits), Expect = 1.5e-87, Sum P(7) = 1.5e-87
Identities = 67/202 (33%), Positives = 103/202 (50%)
Query: 930 KPEEVKKIMGLLN--ESCPPLHSCLSEDKNG-MTHAILEVVAGGIVQTAEDIHRYVRCTL 986
K + + + G L SC L E+ G M AILE++ GG+ T++D+H Y CT
Sbjct: 501 KSKGIALLQGSLKPVRSC--LQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTF 558
Query: 987 LN-STKPFQDVVKSAQDSLR---------WLCHRKFLEWNE-----DTKLYSTTPLGRAA 1031
L S K + ++ Q+S++ WL +F++ E + K+Y T LG A
Sbjct: 559 LAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFIQSTEASDGTEGKVYHPTHLGSAT 618
Query: 1032 FGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVE-VEPDWELYYERFLELSA 1090
SSL P ++L + DL RA +GFVL +DLH++YL TP+ + DW ++ + +L
Sbjct: 619 LSSSLSPADTLDIFADLQRAMKGFVLENDLHILYLVTPMFEDWTTIDWYRFFCLWEKLPT 678
Query: 1091 LDQSVGNQVGVSEPYLMRMAHG 1112
+ V VGV E +L R G
Sbjct: 679 SMKRVAELVGVEEGFLARCVKG 700
Score = 123 (48.4 bits), Expect = 4.1e-177, Sum P(7) = 4.1e-177
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 1746 LADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKL 1805
LA +EL GIG C ++++Q KL +E +AY LAG FS ++ DIA VL+ LKL
Sbjct: 2084 LALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKL 2143
Query: 1806 PIP--EGHNKGKQ 1816
P P E N+G +
Sbjct: 2144 P-PNREMKNQGSK 2155
Score = 118 (46.6 bits), Expect = 4.1e-177, Sum P(7) = 4.1e-177
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 2126 LLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPF 2179
+LQ+HDEL+ EV + + +V+ MESA L V L VK+++G++WG L+ F
Sbjct: 2535 ILQLHDELLYEVAEEDVVQVAQIVKNEMESAVKLSVKLKVKVKIGASWGELKDF 2588
Score = 82 (33.9 bits), Expect = 4.1e-177, Sum P(7) = 4.1e-177
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 1814 GKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGH 1873
G+Q ST K L+ L+ HP+ +I E R ++ N + L R +
Sbjct: 2174 GRQF-STSKDVLNKLKALHPLPGLILEWR---RITNAITKVVFPLQREKCLNPFLGMERI 2229
Query: 1874 W--LQTSTATGRLSMEEPNLQCVEHMVEFKM 1902
+ Q+ TATGR++ EPN+Q V E KM
Sbjct: 2230 YPVSQSHTATGRITFTEPNIQNVPRDFEIKM 2260
Score = 58 (25.5 bits), Expect = 4.1e-177, Sum P(7) = 4.1e-177
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 1533 GLAVCWENSPVYYVNLPKD 1551
GLAVCW YY +L K+
Sbjct: 1902 GLAVCWGGRDAYYFSLQKE 1920
Score = 54 (24.1 bits), Expect = 3.7e-48, Sum P(7) = 3.7e-48
Identities = 22/87 (25%), Positives = 37/87 (42%)
Query: 398 GAADTSEAMMFRDGVVSEKGSVTHKSCQKIKFKCHHDNTSRTE--GISDVQEKDSVLIVH 455
GA DT+ A G++ +K V S + +CH + G + + D + V
Sbjct: 1343 GAKDTNLAA----GIM-QKSLVQQNSMNSFQKECHIPFPAEQHPLGATKIDHLD-LKTVG 1396
Query: 456 ERKLDISSQGIDSITSDSPTNVIKKPV 482
K S G+D +T +SP + P+
Sbjct: 1397 TMKQSSDSHGVDILTPESP--IFHSPI 1421
Score = 51 (23.0 bits), Expect = 2.6e-155, Sum P(6) = 2.6e-155
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 1159 ALILSRLVQETPVLEVCETFKVARGM-VQALQENAGRF-ASMVSV 1201
+++ S L E P+LE ET + + + + A E++GR+ AS+ S+
Sbjct: 2007 SIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESI 2051
Score = 49 (22.3 bits), Expect = 1.8e-164, Sum P(5) = 1.8e-164
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 1814 GKQHPSTDKHCLDLLRHEHPIV--PVIKEHRTL 1844
G S+D H +D+L E PI P++ E L
Sbjct: 1396 GTMKQSSDSHGVDILTPESPIFHSPILLEENGL 1428
Score = 49 (22.3 bits), Expect = 3.7e-48, Sum P(7) = 3.7e-48
Identities = 14/67 (20%), Positives = 27/67 (40%)
Query: 62 TSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSEVG 121
T +S + H + + S K + K+ + SD + V S+E S
Sbjct: 912 THSESEVKEHTFISQTKS-SYKKLTSKNKSNTIFSDSYIKHSPNIVQDLNKSREHTSSFN 970
Query: 122 CHMKDGS 128
C+ ++G+
Sbjct: 971 CNFQNGN 977
Score = 46 (21.3 bits), Expect = 9.2e-35, Sum P(5) = 9.2e-35
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 341 EMLNEGDSKV-----QHIKAGGSLK-----QMGKDVIDSVKELSPLP 377
EM N+G K + I G L+ KDV++ +K L PLP
Sbjct: 2148 EMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLP 2194
Score = 44 (20.5 bits), Expect = 6.4e-156, Sum P(7) = 6.4e-156
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 1463 LDLEVQDRPNRDPCLVNKDRACNKGPINAINAS 1495
LDL + + P R+ +N+ CN+G I ++ S
Sbjct: 726 LDL-ISEVPLRE---INQKYGCNRGQIQSLQQS 754
Score = 44 (20.5 bits), Expect = 3.8e-47, Sum P(7) = 3.8e-47
Identities = 27/120 (22%), Positives = 54/120 (45%)
Query: 174 SLLGGEDNKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGFIVKTGNLVPNSSQRVTDS 233
S L ++ ++ +++ +SNL Q ++ N E +S ++ N++ D
Sbjct: 1666 SSLNRKNTELNEEQEVISNLETKQVQGISFSSNN--EVKSKI-----EMLENNANH--DE 1716
Query: 234 NASLLLQASLRKCDKSS---KSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPGEAF 290
+SLL + D + + + T+A P I++T V P T N++ PGE++
Sbjct: 1717 TSSLLPRKESNIVDDNGLIPPTPIPTSASKLTFPGILETPVN--PWKT--NNVLQPGESY 1772
Score = 43 (20.2 bits), Expect = 1.4e-107, Sum P(3) = 1.4e-107
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 1130 GKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPV-----LEVCE-TFKV--- 1180
G+ Y GI NN A R V + +V+ V LE TFK
Sbjct: 2445 GRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGH 2504
Query: 1181 ARGMVQALQENAGRFASMVSVFCE-RLGWYDLE 1212
GM+Q+ Q R + +FC R G++ L+
Sbjct: 2505 REGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQ 2537
Score = 43 (20.2 bits), Expect = 4.8e-47, Sum P(7) = 4.8e-47
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 170 HSSPSLLGGEDNKIAKKKYCVSNLLQSGEQTTCSNAKNI 208
H S SL ED + KK N + +Q TCSN ++I
Sbjct: 1521 HFSDSLCLQED--LIKKSNVNENQ-DTHQQLTCSNDESI 1556
Score = 40 (19.1 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 1847 LLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNED 1906
LL L IC + R S S Q L + +S PNL+ V + ++ + D
Sbjct: 229 LLELLLTKICYITRKSASCQADLASS--LSNAVQIVGMSATLPNLELVASWLNAELYHTD 286
Score = 39 (18.8 bits), Expect = 1.3e-136, Sum P(6) = 1.3e-136
Identities = 10/64 (15%), Positives = 25/64 (39%)
Query: 1828 LRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSME 1887
++ +P E + + ++ + I +A +++ Q T H + G L +
Sbjct: 2453 IKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSD 2512
Query: 1888 EPNL 1891
+ L
Sbjct: 2513 QTGL 2516
>UNIPROTKB|E1BMC0 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887
GO:GO:0043142 EMBL:DAAA02001581 EMBL:DAAA02001582 EMBL:DAAA02001583
IPI:IPI00687324 Ensembl:ENSBTAT00000002501 OMA:CFSDESI
Uniprot:E1BMC0
Length = 2728
Score = 1032 (368.3 bits), Expect = 1.8e-175, Sum P(9) = 1.8e-175
Identities = 226/529 (42%), Positives = 321/529 (60%)
Query: 501 DCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAE 559
D L L++W LP+ + Y G+ K++ WQ ECL + VL+ +NLVY A TSAGK+ VAE
Sbjct: 199 DKLLLANWGLPTAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAE 258
Query: 560 ILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619
+L+L+R++ K AL +LP+VS+ EK +L+ L + +G V Y G+ +
Sbjct: 259 LLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPTRHFSSLDI 318
Query: 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXX 679
AVCTIE+AN L+NR++EE ++ +G++V+DELHM+ D +RGY Y
Sbjct: 319 AVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYITQKSAS 378
Query: 680 XXXXXXXXXXXXXKADP-AHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIK 738
A P ++ +QIVGMSAT+PN+ VA WL A LY T+FRPVPL E IK
Sbjct: 379 CQADL---------AIPLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESIK 429
Query: 739 VGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARH 798
+GN+IY M +VR + G D DH+V LC E V++ HSVL+FC S+K CE A
Sbjct: 430 IGNSIYDSSMKLVREFQPMLQVKG-DEDHVVSLCYETVRDNHSVLLFCPSKKWCEKLADI 488
Query: 799 VSKFLKKFSIN--------VHSSDS-----EFIDITSAIDALRRCPAGLDPVLEETLPSG 845
+++ + +S++ V SS+ E + +D L+R P+GLD VL++T+P G
Sbjct: 489 IAR--EFYSLHHQAEVTGLVRSSELPPVMLEQKGLLEVMDQLKRSPSGLDSVLQKTVPWG 546
Query: 846 VAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGT 905
VA+HHAGLT EER+++E +R+G +RVL ATSTL++GVNLPARRVI R P +D
Sbjct: 547 VAFHHAGLTFEERDIIEGAFRQGQIRVLAATSTLSSGVNLPARRVIIRTPIFSGRLLDIL 606
Query: 906 RYRQMAGRAGRTGIDT---KGESMLICKPEEVKKIMGLLNESCPPLHSCLS-----EDKN 957
Y+QM GRAGR G+DT GES+L+CK E K + LL S P+HSCL E +
Sbjct: 607 TYKQMVGRAGRKGVDTVGNTGESILVCKNSEKSKGITLLQGSLKPVHSCLQRHEGEEVTS 666
Query: 958 GMTHAILEVVAGGIVQTAEDIHRYVRCTLLN-STKPFQDVVKSAQDSLR 1005
M AILE++ GG+ T++DI Y CT L S K + ++ +DS++
Sbjct: 667 SMIRAILEIIVGGVASTSQDIQTYASCTFLAASMKEGKQGIQKNKDSVQ 715
Score = 389 (142.0 bits), Expect = 1.8e-175, Sum P(9) = 1.8e-175
Identities = 80/179 (44%), Positives = 116/179 (64%)
Query: 1919 INARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGR 1978
++ R F+P ++LAADYSQ+ELR++AH S D LI +L+ DVF IAA W
Sbjct: 2448 VSMRHAFVPFTGG-LILAADYSQLELRILAHLSHDRRLIQVLNTG-ADVFRSIAAEWKMI 2505
Query: 1979 SEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHV 2038
+SVG R Q K++ YGI+YGMG +L EQ+ N+A I SFKS + G++ ++
Sbjct: 2506 EPESVGDNLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGISHFMRE 2565
Query: 2039 AVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINI 2097
V +C + G+V+++ GR+R+L IK N K+ A+RQA+N+ QGSAADI+KIA +NI
Sbjct: 2566 TVKNCKRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTRVQGSAADIVKIATVNI 2624
Score = 244 (91.0 bits), Expect = 1.8e-175, Sum P(9) = 1.8e-175
Identities = 43/121 (35%), Positives = 79/121 (65%)
Query: 1150 LRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWY 1209
+ + KRF+ +L+L L+ E P+ E+ + + RG +Q+LQ++A +A M++VF RLGW+
Sbjct: 850 MAIHKRFFTSLVLLDLISEVPLKEINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWH 909
Query: 1210 DLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKA 1269
++E L+++FQ R++FG++ E+ +L + + RAR LY +G T +A A ++E+
Sbjct: 910 NMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARFLYASGFLTVSDLARADVAEVESV 969
Query: 1270 L 1270
L
Sbjct: 970 L 970
Score = 242 (90.2 bits), Expect = 4.5e-88, Sum P(10) = 4.5e-88
Identities = 67/201 (33%), Positives = 101/201 (50%)
Query: 930 KPEEVKKIMGLLN--ESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
K + + + G L SC H E + M AILE++ GG+ T++DI Y CT L
Sbjct: 638 KSKGITLLQGSLKPVHSCLQRHEG-EEVTSSMIRAILEIIVGGVASTSQDIQTYASCTFL 696
Query: 988 N-STKPFQDVVKSAQDSLR---------WLCHRKFLEWNE-----DTKLYSTTPLGRAAF 1032
S K + ++ +DS++ WL +F++ E + +Y T LG A
Sbjct: 697 AASMKEGKQGIQKNKDSVQLGAIEACVMWLLENEFIQITEASDGTEGNVYHPTHLGSATL 756
Query: 1033 GSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVE-VEPDWELYYERFLELSAL 1091
SSL P ++L + DL RA +GFVL +DLH+VYL TP+ + DW ++ + +L A
Sbjct: 757 SSSLSPIDTLDIFADLQRAMKGFVLENDLHIVYLVTPVFEDWTTIDWYRFFCLWEKLPAS 816
Query: 1092 DQSVGNQVGVSEPYLMRMAHG 1112
+ V VGV E +L R G
Sbjct: 817 MKRVAELVGVEEGFLARCVKG 837
Score = 131 (51.2 bits), Expect = 1.8e-175, Sum P(9) = 1.8e-175
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 1746 LADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKL 1805
LA +EL GIG C ++++Q KL +E +AY LAG FS ++ DIA VL+ LKL
Sbjct: 2218 LALLELNGIGFSTAECESQKHIMQAKLDAIEMQAYQLAGHSFSFTSSDDIAEVLFLELKL 2277
Query: 1806 PIP--EGHNKG 1814
P P EG N+G
Sbjct: 2278 P-PNGEGKNQG 2287
Score = 122 (48.0 bits), Expect = 1.8e-175, Sum P(9) = 1.8e-175
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 2108 PDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKI 2167
P L F ++G +LQ+HDEL+ EV + + +V+ MESA L V L VK+
Sbjct: 2656 PKKKLQGMFCPIRGGF-FILQLHDELLYEVAEEDVVQVAQIVKNEMESAIKLSVKLRVKV 2714
Query: 2168 QVGSTWGSLEPF 2179
++G++WG L+ F
Sbjct: 2715 RIGASWGELKDF 2726
Score = 89 (36.4 bits), Expect = 1.8e-175, Sum P(9) = 1.8e-175
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 1814 GKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGH 1873
GKQ ST K L+ LR HP+ +I E R + + + + R++ ++
Sbjct: 2308 GKQF-STSKGVLNKLRALHPLPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPV 2366
Query: 1874 WLQTSTATGRLSMEEPNLQCVEHMVEFKM 1902
Q+ TATGR++ EPN+Q V E KM
Sbjct: 2367 -SQSHTATGRITFIEPNIQNVPRDFEIKM 2394
Score = 66 (28.3 bits), Expect = 1.8e-175, Sum P(9) = 1.8e-175
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 1533 GLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKRIGEI 1592
GLAVCW YY +L K+ H LI S D + LT + +L ++ + + E
Sbjct: 2036 GLAVCWGGKDAYYFSLQKE--QKHSEISASLIPPSLDPS-LTVKDRLRHLQSCFHK--ES 2090
Query: 1593 MEKRDVRKFTWNMKVQIQVLKHAAVSIQR 1621
++R V + + +I +L +S+++
Sbjct: 2091 DKERSVIIYDFIQSYKILLLS-CGISLEQ 2118
Score = 51 (23.0 bits), Expect = 1.7e-49, Sum P(8) = 1.7e-49
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 580 VSIC-AEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEK 626
+ +C E + +L+ E + + + + NQ G PKDTS+A I+K
Sbjct: 1448 LDLCDLEDSFYLDTQSEKIIQQIATANANQEG---PKDTSLATGMIQK 1492
Score = 48 (22.0 bits), Expect = 1.7e-49, Sum P(8) = 1.7e-49
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 76 RNLSLEIDKYSKDE-KNQALLSDQAQPQATQKVISRCSSKEGNSEVGCHMK 125
R L++E +K +K +N + + + I++C K+ N E H+K
Sbjct: 1294 RELAIESEKKNKVVIQNDSKIQNVYVKHHDTHPINQCLEKQFNKETNTHIK 1344
Score = 46 (21.3 bits), Expect = 5.3e-49, Sum P(8) = 5.3e-49
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 460 DISSQGIDSITSDSPTNVIKKPVGNEKSD 488
+I+S D P +IKKP NE D
Sbjct: 1650 EITSVHFDDSLCLQPEGIIKKPDMNENQD 1678
Score = 44 (20.5 bits), Expect = 1.8e-175, Sum P(9) = 1.8e-175
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 419 VTHKSCQKIKFKCHHDNTSRTEGISDVQEKDSVL---IVHE 456
V H+S K+ H TSR + + K + L I+H+
Sbjct: 19 VKHRSINKLLVPNDHSGTSRAPSMQRLLSKKNNLCPTIIHQ 59
Score = 44 (20.5 bits), Expect = 8.4e-49, Sum P(8) = 8.4e-49
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 165 KDHKRHSSPSLLGGEDNKIAKKKYCVSNLLQSGEQTTCSN 204
K+H H S G +DN + LLQ+G Q T ++
Sbjct: 1915 KNHDLHPE-SRNGFKDNSSIRDTNFSPQLLQNGSQLTLAS 1953
Score = 43 (20.2 bits), Expect = 4.9e-160, Sum P(6) = 4.9e-160
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 1819 STDKHCLDLLRHEHPIV--PVI 1838
STD H +D L E PI PV+
Sbjct: 1535 STDSHEVDTLTPERPIFYSPVL 1556
Score = 41 (19.5 bits), Expect = 2.2e-154, Sum P(9) = 2.2e-154
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 1463 LDLEVQDRPNRDPCLVNKDRACNKGPINAINAS 1495
LDL + + P ++ +N+ CN+G I ++ S
Sbjct: 863 LDL-ISEVPLKE---INQKYGCNRGQIQSLQQS 891
Score = 39 (18.8 bits), Expect = 1.8e-175, Sum P(9) = 1.8e-175
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 1498 FDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGL 1534
F F+ W++ F + +K S S I G+
Sbjct: 1971 FQTFMKEWQSKTRFSISLACEKISNLTSSKSATIGGM 2007
Score = 38 (18.4 bits), Expect = 4.5e-88, Sum P(10) = 4.5e-88
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 542 RNLVYCASTSAGKSFVAEI 560
R L +C S + G+ F I
Sbjct: 117 RTLGFCVSLNGGEDFAMNI 135
Score = 37 (18.1 bits), Expect = 4.4e-46, Sum P(8) = 4.4e-46
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 726 TNFRP--VPLEEYIKVGNAIYSKKMDVVRT 753
++F P +PL E I+ G I S ++V T
Sbjct: 2144 SHFLPHELPLLEEIETGQGIQSLGLNVSTT 2173
>FB|FBgn0002905 [details] [associations]
symbol:mus308 "mutagen-sensitive 308" species:7227
"Drosophila melanogaster" [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR003583 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00278 SMART:SM00482 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006200 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
GO:GO:0006303 GO:GO:0006289 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:L76559 EMBL:BT044169 PIR:T13858 RefSeq:NP_524333.1
UniGene:Dm.23677 HSSP:P00582 SMR:O18475 STRING:O18475
EnsemblMetazoa:FBtr0082662 GeneID:41571 KEGG:dme:Dmel_CG6019
UCSC:CG6019-RA CTD:41571 FlyBase:FBgn0002905 InParanoid:O18475
OrthoDB:EOG4FJ6QM GenomeRNAi:41571 NextBio:824448 Uniprot:O18475
Length = 2059
Score = 1240 (441.6 bits), Expect = 1.9e-168, Sum P(4) = 1.9e-168
Identities = 323/888 (36%), Positives = 477/888 (53%)
Query: 429 FKCHHDNTSRTEGIS-DVQEKDSVLIVHERKLDISSQGIDSITSDSPTNVIKKPVGNEKS 487
F C + +E + D+ SVL E +IS Q +++S SP + P N
Sbjct: 134 FLCPAQDEEASEQLKEDILHSHSVLAKQEFYQEIS-QVTQNLSSMSPNQLRVSP--NSSR 190
Query: 488 DEAGTPSSSGM---LKDCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVL-QRR 542
P M L +S+W LP I + YKK+G+ ++ WQVECL +L +
Sbjct: 191 IREAMPERPAMPLDLNTLRSISAWNLPMSIQAEYKKKGVVDMFDWQVECLSKPRLLFEHC 250
Query: 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602
NLVY A TSAGK+ V+EILML+ ++ GK LL+LP++S+ EK +++ LL P G V
Sbjct: 251 NLVYSAPTSAGKTLVSEILMLKTVLERGKKVLLILPFISVVREKMFYMQDLLTPAGYRVE 310
Query: 603 SYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYX 662
+YG + VA+CTIEKANS+VN+++E+G+L IG++V+DE+H+++D+ RGY
Sbjct: 311 GFYGGYTPPGGFESLHVAICTIEKANSIVNKLMEQGKLETIGMVVVDEVHLISDKGRGYI 370
Query: 663 XXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQAA 722
Y + +Q++ MSAT+ NV + WL A
Sbjct: 371 LELLLAKILYMSRRNGLQ-------------------IQVITMSATLENVQLLQSWLDAE 411
Query: 723 LYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTA-ANLGG--KDPDHIVELCDEVVQEG 779
LY TN+RPV L+E IKVG IY ++ +VR + L G D D + LC E + EG
Sbjct: 412 LYITNYRPVALKEMIKVGTVIYDHRLKLVRDVAKQKVLLKGLENDSDDVALLCIETLLEG 471
Query: 780 HSVLIFCSSRKGCES------TARHVSKFLKKFSINVHSSDSEFID--ITSAIDALRRCP 831
SV++FC S+ CE+ TA HV +K ++ + I LR P
Sbjct: 472 CSVIVFCPSKDWCENLAVQLATAIHVQ--IKSETVLGQRLRTNLNPRAIAEVKQQLRDIP 529
Query: 832 AGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVI 891
GLD V+ + + A+HHAGLT EER+++E ++ G ++VL ATSTL++GVNLPARRV+
Sbjct: 530 TGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVL 589
Query: 892 FRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMG--LLNESCPPLH 949
R P G + YRQM GRAGR G DT GES+LIC E+ MG L+ P+
Sbjct: 590 IRSPLFGGKQMSSLTYRQMIGRAGRMGKDTLGESILICN--EINARMGRDLVVSELQPIT 647
Query: 950 SCLSEDKNGMTH---AILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQ------DVVKSA 1000
SCL D +G TH A+LEV++ G+ T EDI +V CTLL++ K F D A
Sbjct: 648 SCL--DMDGSTHLKRALLEVISSGVANTKEDIDFFVNCTLLSAQKAFHAKEKPPDEESDA 705
Query: 1001 Q---DSLRWLCHRKF--LEWNED--TKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRARE 1053
D+L +L +F L+ NE+ T +Y T LG A SS+ P + LI+ +L ++R
Sbjct: 706 NYINDALDFLVEYEFVRLQRNEERETAVYVATRLGAACLASSMPPTDGLILFAELQKSRR 765
Query: 1054 GFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGA 1113
FVL S+LH VYL TP +V Y +L +D + V + E +
Sbjct: 766 SFVLESELHAVYLVTPYSV-------CY-----QLQDIDWLL--YVHMWEKL------SS 805
Query: 1114 PMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLE 1173
PM+ +L G+ Y+ + L D + +++ KRFY+AL L LV ETP+
Sbjct: 806 PMKKVGEL----VGVRDAFLYK-ALRGQTKL-DYKQMQIHKRFYIALALEELVNETPINV 859
Query: 1174 VCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVEL 1233
V +K RGM+Q+LQ+ A FA +V+ FC L W L ++++F++R+ FG+ ++++L
Sbjct: 860 VVHKYKCHRGMLQSLQQMASTFAGIVTAFCNSLQWSTLALIVSQFKDRLFFGIHRDLIDL 919
Query: 1234 TTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQ 1281
IP + RARAL+ AG+ + + +A A E+ K L+ S S+ + Q
Sbjct: 920 MRIPDLSQKRARALFDAGITSLVELAGADPVELEKVLYNSISFDSAKQ 967
Score = 492 (178.3 bits), Expect = 1.9e-168, Sum P(4) = 1.9e-168
Identities = 118/308 (38%), Positives = 177/308 (57%)
Query: 1870 LHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQ 1929
+HG + T TATGR+SM EPNLQ V EF + G ++V H I+ R F+P+
Sbjct: 1768 IHGQSI-TYTATGRISMTEPNLQNVAK--EFSIQ----VG--SDVVH--ISCRSPFMPTD 1816
Query: 1930 ENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERD 1989
E+ LL+AD+ Q+E+R++AH S+D AL+ ++ K D+F IAA W E V R+
Sbjct: 1817 ESRCLLSADFCQLEMRILAHMSQDKALLEVM-KSSQDLFIAIAAHWNKIEESEVTQDLRN 1875
Query: 1990 QTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYV 2049
TK++ YGI+YGMG +L+E LNCS EA+ F ++ G+ + V+ KG+V
Sbjct: 1876 STKQVCYGIVYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFARSKGFV 1935
Query: 2050 ESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPD 2109
E++ GR+R+L I K++A+RQAVNS QGSAADI K A++ + I Y+
Sbjct: 1936 ETITGRRRYLENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIER--YREK 1993
Query: 2110 SSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQV 2169
+L N L++ +HDEL+ EV K+ ++ ME+ L VPL VK+++
Sbjct: 1994 LALGDN------SVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVKLSVPLKVKLRI 2047
Query: 2170 GSTWGSLE 2177
G +WG +
Sbjct: 2048 GRSWGEFK 2055
Score = 85 (35.0 bits), Expect = 1.1e-125, Sum P(4) = 1.1e-125
Identities = 50/215 (23%), Positives = 88/215 (40%)
Query: 1746 LADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKL 1805
L MEL G + Q + ++ +E K Y G +F+L ++ +A VL G
Sbjct: 1661 LCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRFNLGSSQAVAKVL-GL--- 1716
Query: 1806 PIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSI---CSLARIS 1862
H K K +T + L+ L PI +I +R L+ LL ++ + C RI
Sbjct: 1717 -----HRKAKGRVTTSRQVLEKLNS--PISHLILGYRKLSGLLAKSIQPLMECCQADRIH 1769
Query: 1863 MSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAE----VDHCK 1918
+ YT G T ++ +E ++Q +V + + + D C+
Sbjct: 1770 GQSITYTATGRISMTEPNLQNVA-KEFSIQVGSDVVHISCRSPFMPTDESRCLLSADFCQ 1828
Query: 1919 INARDFFIPSQENWILLAADYSQ-IELRLMAHFSK 1952
+ R SQ+ +L SQ + + + AH++K
Sbjct: 1829 LEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNK 1863
Score = 54 (24.1 bits), Expect = 1.9e-168, Sum P(4) = 1.9e-168
Identities = 39/174 (22%), Positives = 73/174 (41%)
Query: 1518 DKHSEANSGVLFE------IHGLAVCWENSPVYYVNLPKDLWSDHRR-----KDRFLIYG 1566
++ + A VLF+ I G++ C ++ YY N+ D + ++ K + L
Sbjct: 1468 NREAAARERVLFQVDDTNFISGVSFCLADNVAYYWNMQIDERAAYQGVPTPLKVQELCNL 1527
Query: 1567 SSDKNVLTPEH----QLEMIKQRWKRIGEIMEK-RDVRKFTWNMKVQ--IQVLKHAAVSI 1619
+ K++ H QL+M+++ ++ I K D + W ++ + L
Sbjct: 1528 MARKDLTLVMHDGKEQLKMLRKAIPQLKRISAKLEDAKVANWLLQPDKTVNFLNMCQTFA 1587
Query: 1620 QRFGGL-NLVGTSLGLENVG--SSFLLLSPVHLKDGIDMCIVSWILWPDDERSS 1670
GL NL G+ G + G +S +L P ++ I+ C+ IL E S
Sbjct: 1588 PECTGLANLCGSGRGYSSYGLDTSSAIL-P-RIRTAIESCVTLHILQGQTENLS 1639
Score = 54 (24.1 bits), Expect = 6.1e-39, Sum P(5) = 6.1e-39
Identities = 36/137 (26%), Positives = 58/137 (42%)
Query: 832 AGLDPV-LEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRV 890
AG DPV LE+ L + +++ A + E + ++ +VR T V+ A+ +
Sbjct: 945 AGADPVELEKVLYNSISFDSA--KQHDHENADEAAKRNVVRNFYITGKAGMTVSEAAKLL 1002
Query: 891 I-----FRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESC 945
I F Q IG I T+ + G++ S I EV M L E
Sbjct: 1003 IGEARQFVQHEIGLGTIKWTQTQ--------AGVEIA--SRAIHDGGEVDLHMSLEEEQ- 1051
Query: 946 PPLHSCLSEDKNGMTHA 962
PP+ LS ++NG ++
Sbjct: 1052 PPVKRKLSIEENGTANS 1068
Score = 45 (20.9 bits), Expect = 2.6e-40, Sum P(3) = 2.6e-40
Identities = 22/81 (27%), Positives = 33/81 (40%)
Query: 58 DDGHTS-KQSLLSRHEVVKRNLSLEIDKYSKDEKNQAL--LSDQAQPQATQKVISRCSSK 114
D G SL VKR LS+E + + +KN L + D + K I+ S
Sbjct: 1037 DGGEVDLHMSLEEEQPPVKRKLSIEENGTANSQKNPRLETVVDTQRGYKVDKNIANQSKM 1096
Query: 115 EGN-SEVGCHMK---DGSAHI 131
N E+ K + +AH+
Sbjct: 1097 NPNLKEIDAQNKARRNSTAHM 1117
Score = 42 (19.8 bits), Expect = 8.7e-39, Sum P(4) = 8.7e-39
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 1366 DKPSLEANQISKKVDLESAGEKLLETSDNELSALVEGGSITELQQ 1410
D+P+L+ N E A E+L E + S L + E+ Q
Sbjct: 125 DQPNLDENSFLCPAQDEEASEQLKEDILHSHSVLAKQEFYQEISQ 169
Score = 42 (19.8 bits), Expect = 1.4e-36, Sum P(5) = 1.4e-36
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 1565 YGSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRD 1597
Y D + L H E + K++GE++ RD
Sbjct: 786 YQLQDIDWLLYVHMWEKLSSPMKKVGELVGVRD 818
Score = 41 (19.5 bits), Expect = 1.3e-37, Sum P(5) = 1.3e-37
Identities = 18/73 (24%), Positives = 32/73 (43%)
Query: 1171 VLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEI 1230
V +V + A+G V ++ + S +S LG+ L GL+AK + +A+
Sbjct: 1710 VAKVLGLHRKAKGRVTTSRQVLEKLNSPISHLI--LGYRKLSGLLAKSIQPLMECCQADR 1767
Query: 1231 VELTTIPYVKGSR 1243
+ +I Y R
Sbjct: 1768 IHGQSITYTATGR 1780
Score = 40 (19.1 bits), Expect = 1.9e-168, Sum P(4) = 1.9e-168
Identities = 9/42 (21%), Positives = 29/42 (69%)
Query: 63 SKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQAT 104
++QS+++ +V ++++++ ++ S+D+ + L+DQ Q++
Sbjct: 72 AEQSVVNVSQV-QQHMAVVSNQDSEDQSRSSALNDQICTQSS 112
Score = 39 (18.8 bits), Expect = 7.1e-167, Sum P(4) = 7.1e-167
Identities = 15/70 (21%), Positives = 30/70 (42%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGH 1802
V+ D +GI D+ ++ +L QK+ R L T ++ + ++ VLY
Sbjct: 901 VSQFKDRLFFGIHRDLIDLMRIPDLSQKRARALFDAGITSL-VELAGADPVELEKVLYNS 959
Query: 1803 LKLPIPEGHN 1812
+ + H+
Sbjct: 960 ISFDSAKQHD 969
Score = 38 (18.4 bits), Expect = 6.1e-39, Sum P(5) = 6.1e-39
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 343 LNEGDSKVQHIKAGGSLKQMGKDVIDSVKELS 374
+ + +S V + G L+ +G V+D V +S
Sbjct: 332 IEKANSIVNKLMEQGKLETIGMVVVDEVHLIS 363
Score = 37 (18.1 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 43 PSAKGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLEIDKYSKDEKN 91
P G L + + Q + S +R + EID SK+E N
Sbjct: 1322 PEVIGALTPHASRLKRSDQLRSQRIQSPSPTPQREI--EIDLESKNESN 1368
>UNIPROTKB|F1NMU1 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0006281 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 GO:GO:0003887 GO:GO:0043142 EMBL:AADN02037908
IPI:IPI00584654 Ensembl:ENSGALT00000024072 Uniprot:F1NMU1
Length = 904
Score = 1071 (382.1 bits), Expect = 2.6e-152, Sum P(3) = 2.6e-152
Identities = 230/539 (42%), Positives = 322/539 (59%)
Query: 501 DCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAE 559
D L L+SW LP + Y G+ +++ WQ ECL + VL+ +NLVY A TSAGK+ VAE
Sbjct: 32 DKLLLASWGLPKAVLEKYHSLGVVQMFEWQAECLMLGQVLEGKNLVYSAPTSAGKTLVAE 91
Query: 560 ILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619
+L+L+R++ T K AL +LP+VS+ EK +L+ L + + V Y G+ V
Sbjct: 92 LLILKRVLETRKKALFILPFVSVAKEKKCYLQALFQEVDMRVGGYMGSISPAGRFSLLDV 151
Query: 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXX 679
AVCTIEKAN L+NR++EE ++ +G++V+DELHM+ D +RGY RY
Sbjct: 152 AVCTIEKANGLINRLIEENQMDSLGVVVVDELHMLGDSHRGYLLELLLTKVRYITEKAAK 211
Query: 680 XXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKV 739
K+ G+Q+VGMSAT+PN+ +A WL A LY T+FRPVPL+E++K+
Sbjct: 212 RKTKM--------KSPGFGGIQVVGMSATLPNLGLLASWLDAELYCTDFRPVPLKEWVKI 263
Query: 740 GNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV 799
GN IY M++VR L G D DH+V LC E V +GHSVL+FC S+ CE A +
Sbjct: 264 GNNIYDSSMNLVREFQPKLQLKG-DEDHVVSLCYETVCDGHSVLLFCPSKNWCEKLADII 322
Query: 800 SK-FL-----KKFSINVHSSDSEFID---ITSAIDALRRCPAGLDPVLEETLPSGVAYHH 850
++ F +K S S +D I +D LRR +GLD VL+ TLP GVA+HH
Sbjct: 323 AREFYSLQQAEKGSAKNSSLSPVVVDREGIDEVLDQLRRSLSGLDSVLQRTLPWGVAFHH 382
Query: 851 AGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQM 910
AGLT +ER+++E +R+ +RVL ATSTL++GVNLPARRVI R P G +D Y+QM
Sbjct: 383 AGLTFDERDIIEGAFRQSTIRVLAATSTLSSGVNLPARRVIIRTPMFGGTLLDVLTYKQM 442
Query: 911 AGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDK-----NGMTHAILE 965
AGRAGR G+DT+GES+L+CKP E K LL S P+ SCL + + M AILE
Sbjct: 443 AGRAGRKGVDTEGESILVCKPSERSKGTALLQGSLKPVRSCLLRKEGEGVASSMKRAILE 502
Query: 966 VVAGGIVQTAEDIHRYVRCTLLNST--------KPFQDVVKSA--QDSLRWLCHRKFLE 1014
++ G+ T +D+ Y CTLL S+ + QD V++ + + WL +F++
Sbjct: 503 IIVSGVANTPDDVQTYASCTLLASSLKDNKRENEKEQDKVQTGPIEACIAWLLENEFIQ 561
Score = 257 (95.5 bits), Expect = 2.6e-152, Sum P(3) = 2.6e-152
Identities = 48/124 (38%), Positives = 82/124 (66%)
Query: 1150 LRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWY 1209
+ + KRF+ +L L L+ E P+ ++ + + +RG +Q+LQ++A +A MV+VFC RLGW+
Sbjct: 678 MAIHKRFFTSLALLDLISEVPLKDMTKKYGCSRGQLQSLQQSAATYAGMVTVFCNRLGWH 737
Query: 1210 DLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKA 1269
++E L+++FQ+R++FGV E+ +L + + RAR LY AG T +A+AS ++ A
Sbjct: 738 NMELLLSQFQSRLTFGVHRELCDLVRVSLLNAQRARMLYNAGFVTVADLAKASPGDVATA 797
Query: 1270 LFES 1273
L S
Sbjct: 798 LKNS 801
Score = 231 (86.4 bits), Expect = 2.6e-152, Sum P(3) = 2.6e-152
Identities = 59/172 (34%), Positives = 90/172 (52%)
Query: 957 NGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNST--------KPFQDVVKSA--QDSLRW 1006
+ M AILE++ G+ T +D+ Y CTLL S+ + QD V++ + + W
Sbjct: 494 SSMKRAILEIIVSGVANTPDDVQTYASCTLLASSLKDNKRENEKEQDKVQTGPIEACIAW 553
Query: 1007 LCHRKF---LEWNED--TKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDL 1061
L +F LE +D K++ T LG A SSL P E++ + DL RA + FVL +DL
Sbjct: 554 LLENEFIQVLERADDKKAKIFHPTHLGSATLSSSLSPTEAMEIFSDLQRAMKSFVLENDL 613
Query: 1062 HLVYLSTPINVE-VEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHG 1112
H+VYL TP+ + DW ++ + +L A + V VG+ E +L R G
Sbjct: 614 HIVYLVTPVYEDWTTIDWYQFFCLWEKLPASMKRVAELVGIEEGFLARSVKG 665
>UNIPROTKB|F1PXD9 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AAEX03017021 Ensembl:ENSCAFT00000018256
OMA:NECHITF Uniprot:F1PXD9
Length = 1835
Score = 1015 (362.4 bits), Expect = 1.6e-118, Sum P(4) = 1.6e-118
Identities = 220/518 (42%), Positives = 311/518 (60%)
Query: 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584
++ WQ ECL + VL+ +NLVY A TSAGK+ VAE+LML+R++ K AL +LP+VS+
Sbjct: 1 MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLMLKRVLEMRKKALFILPFVSVAK 60
Query: 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIG 644
EK +L+ L + +G +V Y G+ +AVCTIE+AN L+NR++EE ++ +G
Sbjct: 61 EKKYYLQSLFQEIGINVDGYMGSTSPTGHFSSLDIAVCTIERANGLINRLIEENKMDLLG 120
Query: 645 IIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADP-AHGLQIV 703
++V+DELHM+ D +RGY Y A P ++ +QIV
Sbjct: 121 MVVVDELHMLGDSHRGYLLELLLTKICYITHKSASCQADL---------ASPLSNAVQIV 171
Query: 704 GMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGK 763
GMSAT+PN+ VA WL A LY TNFRPVPL E +K+GN+IY M +VR + G
Sbjct: 172 GMSATLPNLEIVASWLNAELYHTNFRPVPLLESVKIGNSIYDSSMKLVREFQPNLQVKG- 230
Query: 764 DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVS-KFLK---KFSINVHSSDS---- 815
D DH+V LC E + + HSVLIFC S+K CE A ++ +F + + V SS+
Sbjct: 231 DEDHVVSLCYETICDNHSVLIFCPSKKWCEKLADIIACEFYNLHHQATGLVRSSELPPVV 290
Query: 816 -EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874
E + +D L+R P+GLD VL++T+P GVA+HHAGLT EER+++E +R+G +RVL
Sbjct: 291 LEQKGLLEVMDQLKRSPSGLDSVLQKTIPWGVAFHHAGLTFEERDIIEGAFRQGQIRVLA 350
Query: 875 ATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEV 934
ATSTL++GVNLPARRVI R P G +D Y+QM GRAGR G+DT GES+L+CK E
Sbjct: 351 ATSTLSSGVNLPARRVIIRTPIFGGQPLDILTYKQMVGRAGRKGVDTVGESILVCKNSEK 410
Query: 935 KKIMGLLNESCPPLHSCLSEDKN-----GMTHAILEVVAGGIVQTAEDIHRYVRCTLLNS 989
K + LL S P+ SCL K M AILE++ GG+ T++D+ Y CT L +
Sbjct: 411 SKGIALLQGSLKPVRSCLQRQKGEEVTASMIRAILEIIVGGVASTSQDMQTYASCTFLAA 470
Query: 990 T--------KPFQDVVK--SAQDSLRWLCHRKFLEWNE 1017
+ + QD V+ + + + WL +F++ E
Sbjct: 471 SMKEGKLGSQKNQDCVQLGAIEACVMWLLENEFIQITE 508
Score = 252 (93.8 bits), Expect = 1.6e-118, Sum P(4) = 1.6e-118
Identities = 47/135 (34%), Positives = 90/135 (66%)
Query: 1150 LRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWY 1209
+ + KRF+ +L+L L+ E P+ E+ + + +RG +Q+LQ++A +A M++VF RLGW+
Sbjct: 622 MAIHKRFFTSLVLLDLISEVPLKEINQKYGCSRGQIQSLQQSAAVYAGMITVFSNRLGWH 681
Query: 1210 DLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKA 1269
++E L+++FQ R++FG++ E+ +L + + RAR LY +G T +A A+I+E V+A
Sbjct: 682 NMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARFLYASGFLTVADLARANIAE-VEA 740
Query: 1270 LFESSSWIAEAQRRV 1284
+ +++ A++ V
Sbjct: 741 VLKNAVPFKSARKAV 755
Score = 223 (83.6 bits), Expect = 1.9e-32, Sum P(4) = 1.9e-32
Identities = 57/170 (33%), Positives = 89/170 (52%)
Query: 959 MTHAILEVVAGGIVQTAEDIHRYVRCTLLNST--------KPFQDVVK--SAQDSLRWLC 1008
M AILE++ GG+ T++D+ Y CT L ++ + QD V+ + + + WL
Sbjct: 440 MIRAILEIIVGGVASTSQDMQTYASCTFLAASMKEGKLGSQKNQDCVQLGAIEACVMWLL 499
Query: 1009 HRKFLEWNE-----DTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHL 1063
+F++ E + +Y T LG A SSL P ++L + DL RA +GFVL +DLH+
Sbjct: 500 ENEFIQITETGDGTEGTVYHPTHLGSATLSSSLSPTDTLDIFADLQRAMKGFVLENDLHI 559
Query: 1064 VYLSTPINVE-VEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHG 1112
VYL TP+ + DW ++ + +L + V VGV E +L R G
Sbjct: 560 VYLVTPMFEDWATIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKG 609
Score = 58 (25.5 bits), Expect = 1.6e-118, Sum P(4) = 1.6e-118
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 1533 GLAVCWENSPVYYVNLPKD 1551
GLAVCW YY +L K+
Sbjct: 1811 GLAVCWGGRDAYYFSLQKE 1829
Score = 45 (20.9 bits), Expect = 3.2e-118, Sum P(3) = 3.2e-118
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 1675 EKEVKKRLSSEAAAAANRSGRWKNQ--MRRAAHN 1706
EK K+ L+ + + SG WK+ ++R+ H+
Sbjct: 931 EKTKKEALNFSSEKISTASGSWKHSKHVKRSRHS 964
Score = 38 (18.4 bits), Expect = 1.6e-118, Sum P(4) = 1.6e-118
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 1498 FDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHG 1533
F F+ W+ + F + +K S S I G
Sbjct: 1746 FQTFIKEWQCKNRFSISLACEKISNFTSSKSAAIGG 1781
Score = 37 (18.1 bits), Expect = 2.2e-117, Sum P(3) = 2.2e-117
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 1650 KDGIDMCIVSWILWP--DDERSSNPNLEKEVKKR 1681
+D ++M V W L + + S+P+ E EVK++
Sbjct: 798 QDLVEMG-VQWNLHSLLNSDTQSSPSSESEVKEQ 830
>WB|WBGene00020964 [details] [associations]
symbol:polq-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887 KO:K02349
EMBL:FO081687 EMBL:FO081686 RefSeq:NP_498250.3
ProteinModelPortal:A0FLQ6 PaxDb:A0FLQ6 EnsemblMetazoa:W03A3.2
GeneID:175810 KEGG:cel:CELE_W03A3.2 UCSC:W03A3.2 CTD:175810
WormBase:W03A3.2 InParanoid:A0FLQ6 OMA:EASIPEI NextBio:889766
Uniprot:A0FLQ6
Length = 1661
Score = 478 (173.3 bits), Expect = 2.4e-113, Sum P(6) = 2.4e-113
Identities = 127/378 (33%), Positives = 201/378 (53%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA-LYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++I+GMSAT+P + + WL A ++E FRP+ L+ +I +G+ + K D +L
Sbjct: 181 VRIIGMSATIPELYRIGKWLDGAKVFEARFRPIVLQNHIVIGSEL-RKSGD--NKVLREF 237
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
+ +DP ++ L +E + L+ SS+ E TA +++ +F ++ +DS +
Sbjct: 238 S---EDP--LILLTEESFRRNSQTLVMISSKLDAEKTALNIAS---RFH-EINKTDSSLL 288
Query: 819 DITSA-IDALRRCPAGL------DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
+I + L GL D + TL GVAYHHAGLT+EERE +E +R+ +
Sbjct: 289 EILKERANGLLFIKHGLERNGCKDRNVMSTLAWGVAYHHAGLTMEERECIELGFREKNIV 348
Query: 872 VLTATSTLAAGVNLPARRVIFR-QPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
+L ATSTLA+GVNLPA RV+ + QPR G + YRQM GRAGRTG T+GE+ L+ K
Sbjct: 349 ILVATSTLASGVNLPAERVLIKAQPR-GPSALTSLNYRQMVGRAGRTGHATRGETYLLIK 407
Query: 931 PEEVKKIMGLLNESCPP--LHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLN 988
+ ++ ++ L ++ ++ ILE + G+ T IH + L N
Sbjct: 408 KCDRDAVLKIIETPIDQGVLTRKRDAERTNLSRFILEGICTGLTTTRSQIHDLCKLLLFN 467
Query: 989 STKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDL 1048
S ++ + ++ L F+ +E+ S T LGRAA SSL PE SL + +DL
Sbjct: 468 SEN-----LQLSDIAIEMLLRNSFISQDENDDQLSPTQLGRAAIASSLPPEASLAIFEDL 522
Query: 1049 SRAREGFVLASDLHLVYL 1066
+ A L ++LH++YL
Sbjct: 523 NSASRAIALDTELHMLYL 540
Score = 288 (106.4 bits), Expect = 2.4e-113, Sum P(6) = 2.4e-113
Identities = 64/153 (41%), Positives = 91/153 (59%)
Query: 508 WLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
W+ S+I Y ++ I L+ WQ++ L+ + ++L++ A TSAGKS VAE+L + +
Sbjct: 11 WVSSKIIDYYAEQNIKALFDWQIDVLNEARQFEDQHLIFSAPTSAGKSIVAELLSWK-VA 69
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKA 627
STG+ L VLPY+S+ EK ++ V + G Q S P + AVCTIEKA
Sbjct: 70 STGRKVLFVLPYISVAREKLHQIQRCWRRDDISVCGFIGPQA--SNPNEWLGAVCTIEKA 127
Query: 628 NSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
SL NR L E EIG+IV+DE+HMV D +RG
Sbjct: 128 ASLTNRALSEDWFEEIGMIVVDEMHMVFDSSRG 160
Score = 280 (103.6 bits), Expect = 2.4e-113, Sum P(6) = 2.4e-113
Identities = 63/183 (34%), Positives = 109/183 (59%)
Query: 1919 INARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGR 1978
++AR FI + EN +L+ ADY Q+ELR++AH S D L+ L++ D+F ++ +W
Sbjct: 1431 MSARQLFIANSEN-LLIGADYKQLELRVLAHLSNDSNLVNLITSDR-DLFEELSIQW--- 1485
Query: 1979 SEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHV 2038
+ RD K+L YG++YGMG +LSE S +A++ +K+F + FPGV S+++
Sbjct: 1486 ------NFPRDAVKQLCYGLIYGMGAKSLSELTRMSIEDAEKMLKAFFAMFPGVRSYINE 1539
Query: 2039 AVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIH 2098
++ + ++ GR+ + G +E+++ +R AVN QGSA++I K A+++I
Sbjct: 1540 TKEKVCKEEPISTIIGRRTIIKASGIG--EERARIERVAVNYTIQGSASEIFKTAIVDIE 1597
Query: 2099 SII 2101
S I
Sbjct: 1598 SKI 1600
Score = 232 (86.7 bits), Expect = 2.4e-113, Sum P(6) = 2.4e-113
Identities = 72/294 (24%), Positives = 139/294 (47%)
Query: 1129 HGKLEYRLGITSNNMLSDAQ------TLRVCKRFYVALILSRLVQETPVLEVCETFKVAR 1182
H ++ +G++ +L Q L++ RF+ AL L L+ E + EV +++ R
Sbjct: 626 HKRIAKLVGVSEKFILDQLQGRRNDKLLQIHIRFFSALALFDLISEMSIYEVSHKYRIPR 685
Query: 1183 GMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGS 1242
G +Q LQ + +A+M+ FC RLGW L+ L+ F R+ FGVR+E+ EL I + G
Sbjct: 686 GCLQTLQSQSATYAAMIVAFCLRLGWTYLKALLDGFATRLLFGVRSELSELVAIEGIDGQ 745
Query: 1243 RARALYKAGLRTPLAIAEASISEIVKAL-----FESSS-------WI-AEAQRRVQLGVA 1289
RAR L++ G+ ++ S++ L + SS+ W+ E + RV + A
Sbjct: 746 RARILHERGVTCLSHLSACDSSKLAHFLTLAVPYSSSNSNDGLGEWLFGEPRMRVDVA-A 804
Query: 1290 KKIKNGARKIVLEKAEEARIAA-FSAFKSLGLNVPQFSRPILSTATENSTGEEEAATTAP 1348
+ +K ARK+++ + +E I+ F+ N+ + L + E E E
Sbjct: 805 RTLKERARKVLIRRVQELGISVELPKFEENEENIQESCDSGLPDSCEGMEDELEEKENIV 864
Query: 1349 RNDKSSSFIFPVPM-EHSDKPSLEANQISKKVDLESAGEKLLETSDNELSALVE 1401
+ ++ + + + + +++ E + K++ +E + + D + +VE
Sbjct: 865 KMEEMTKSVTEMSLTDNTISFKSEDDLFKKEIKVEEDEVFIKKEIDEDEEEIVE 918
Score = 155 (59.6 bits), Expect = 2.4e-100, Sum P(6) = 2.4e-100
Identities = 60/213 (28%), Positives = 100/213 (46%)
Query: 1753 GIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHN 1812
GI D C ++K++ LE+ + LA KF+++++ ++ANVL+ L L PE
Sbjct: 1288 GIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKFNIHSSNEVANVLFYRLGLIYPETSG 1347
Query: 1813 -KGK-QHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTL 1870
K K +H T+K L+ + +HPIV I E+R + L L M K+
Sbjct: 1348 CKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQHTLTQCL----------MPLAKFIG 1397
Query: 1871 HGH-WLQTSTATGRLSMEEPNLQCVEHMVEFK-MSNEDIYGGNAE-----VDHCKINARD 1923
H W + T+TGR+ PNLQ V + MS ++ N+E D+ ++ R
Sbjct: 1398 RIHCWFEMCTSTGRILTSVPNLQNVPKRISSDGMSARQLFIANSENLLIGADYKQLELRV 1457
Query: 1924 F-FIPSQENWI-LLAADYSQIE-LRLMAHFSKD 1953
+ + N + L+ +D E L + +F +D
Sbjct: 1458 LAHLSNDSNLVNLITSDRDLFEELSIQWNFPRD 1490
Score = 89 (36.4 bits), Expect = 2.4e-113, Sum P(6) = 2.4e-113
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 2124 RLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAA--LLLVPLLVKIQVGSTWGSLE 2177
+++L +HDE+++E + A ++ CM++A LL VP+ V ++ G +W L+
Sbjct: 1606 QIVLTIHDEVLVECPEIHVAAASESIENCMQNALSHLLRVPMRVSMKTGRSWADLK 1661
Score = 71 (30.1 bits), Expect = 2.4e-113, Sum P(6) = 2.4e-113
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 1068 TPINVEV--EPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHG 1112
TPINV V E DW + F +L + + + VGVSE +++ G
Sbjct: 600 TPINVSVWQECDWHHLFSIFSKLPSDHKRIAKLVGVSEKFILDQLQG 646
Score = 45 (20.9 bits), Expect = 7.6e-22, Sum P(3) = 7.6e-22
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 63 SKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSSKE 115
+++ L+ R V + +S+E+ K+ ++E+N D P + + + KE
Sbjct: 811 ARKVLIRR--VQELGISVELPKFEENEENIQESCDSGLPDSCEGMEDELEEKE 861
Score = 43 (20.2 bits), Expect = 1.9e-65, Sum P(4) = 1.9e-65
Identities = 27/141 (19%), Positives = 52/141 (36%)
Query: 1262 SISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAEEARIAAFSAFKSLGLN 1321
S+SE+ + E + + +A + GV I K+ E+ I + K+ G+
Sbjct: 1507 SLSELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKVCKEEPISTIIGRRTIIKASGIG 1566
Query: 1322 VPQ--FSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQISKKV 1379
+ R ++ + S E K F + + D+ +E +I
Sbjct: 1567 EERARIERVAVNYTIQGSASEIFKTAIVDIESKIKEFGAQIVLTIHDEVLVECPEIH--- 1623
Query: 1380 DLESAGEKLLETSDNELSALV 1400
+ +A E + N LS L+
Sbjct: 1624 -VAAASESIENCMQNALSHLL 1643
Score = 40 (19.1 bits), Expect = 2.0e-88, Sum P(6) = 2.0e-88
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 1452 NAIGTITSNRDL--DLEVQDRPNRD 1474
N + ITS+RDL +L +Q RD
Sbjct: 1466 NLVNLITSDRDLFEELSIQWNFPRD 1490
Score = 37 (18.1 bits), Expect = 7.3e-22, Sum P(3) = 7.3e-22
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 1984 GSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEK 2021
G ++R+ L +G+ Y T+ E+ C +EK
Sbjct: 309 GCKDRNVMSTLAWGVAYHHAGLTMEER-ECIELGFREK 345
>UNIPROTKB|D4A2B2 [details] [associations]
symbol:Polq "Protein Polq" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR019760
Pfam:PF00270 Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00482 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0008026 GO:GO:0003887 IPI:IPI00391259
ProteinModelPortal:D4A2B2 Ensembl:ENSRNOT00000034851 Uniprot:D4A2B2
Length = 2261
Score = 394 (143.8 bits), Expect = 9.1e-107, Sum P(8) = 9.1e-107
Identities = 80/179 (44%), Positives = 116/179 (64%)
Query: 1919 INARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGR 1978
++ R F+P ++LAADYSQ+ELR++AH S+D LI +L+ DVF IAA W
Sbjct: 1983 VSMRHAFVPFPGG-LILAADYSQLELRILAHLSRDCRLIQVLNSG-ADVFRSIAAEWKMI 2040
Query: 1979 SEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHV 2038
D+VG R Q K++ YGI+YGMG +L EQ+ N+A I SFKS + G+ ++
Sbjct: 2041 EPDAVGDNLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYKGINHFMRD 2100
Query: 2039 AVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINI 2097
V +C + G+VE++ GR+R+L IK N K+ A+RQA+N+ QGSAADI+K+A +NI
Sbjct: 2101 TVKNCRRDGFVETILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKVATVNI 2159
Score = 316 (116.3 bits), Expect = 9.1e-107, Sum P(8) = 9.1e-107
Identities = 63/145 (43%), Positives = 93/145 (64%)
Query: 501 DCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAE 559
D L L++W LP + Y G+ K++ WQ ECL + VL+ +NLVY A TSAGK+ VAE
Sbjct: 68 DQLLLANWGLPKAVLEKYHNFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAE 127
Query: 560 ILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619
+L+L+R++ T K AL +LP+VS+ EK +L+ L + +G V Y G+ V
Sbjct: 128 LLILKRVLETRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPTGRFSSLDV 187
Query: 620 AVCTIEKANSLVNRMLEEGRLSEIG 644
AVCTIE+AN L+NR++EE ++ +G
Sbjct: 188 AVCTIERANGLINRLIEENKMDLLG 212
Score = 237 (88.5 bits), Expect = 9.1e-107, Sum P(8) = 9.1e-107
Identities = 65/212 (30%), Positives = 113/212 (53%)
Query: 1156 FYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLI 1215
F+ +L+L L+ E P+ E+ + + RG +Q+LQ++A +A M++VF RLGW+++E L+
Sbjct: 441 FFTSLVLLDLISEIPLKEINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLL 500
Query: 1216 AKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL----- 1270
++FQ R++FG++ E+ +L + + RAR LY +G T +A A E+ AL
Sbjct: 501 SQFQKRLTFGIQRELCDLIRVSSLNAQRARFLYASGFLTVADLARADTVEVEAALKDALP 560
Query: 1271 FESS-------SWIAEAQRRVQ-LGVAKKIKNGARKIVLEKAEEARIAAFSAFKSLGLNV 1322
F+S+ AE +R ++ + VA K + AR+ EEA++ +G+
Sbjct: 561 FKSARKAVDEEEEAAEERRSMRTIWVAGKSLS-AREAAALIVEEAKVILQQDLIEMGVQW 619
Query: 1323 PQFSRPILSTATENSTGEEEAATTAPRNDKSS 1354
S P+ S+ ++G E T KSS
Sbjct: 620 GPHS-PLSSSTHSLTSGSEVKEHTFKSQTKSS 650
Score = 152 (58.6 bits), Expect = 9.1e-107, Sum P(8) = 9.1e-107
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 919 IDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLS---EDKNGMTHAILEVVAGGIVQTA 975
+D GES+L+CK E K + LL S P+HSCL E + M AILE++ G+ T+
Sbjct: 208 MDLLGESILVCKNSEKSKGIALLQGSLEPVHSCLQSQGEVTSTMIRAILEIIVSGVASTS 267
Query: 976 EDIHRYVRCTLL-----NSTKPFQ----DVVKSAQDS-LRWLCHRKFLE 1014
+D+ Y CT L + Q DV + A D+ + WL +F++
Sbjct: 268 QDMQTYAACTFLAADVKEGKQGIQRNRDDVQRGAVDACVTWLLENEFIQ 316
Score = 130 (50.8 bits), Expect = 9.1e-107, Sum P(8) = 9.1e-107
Identities = 32/68 (47%), Positives = 41/68 (60%)
Query: 1746 LADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKL 1805
LA +EL GIG C ++++Q KL +E +AY LAG FS +A DIA VL+ LKL
Sbjct: 1757 LALLELNGIGFSTAECETQKHIMQAKLDAIETQAYQLAGHSFSFTSADDIAQVLFLELKL 1816
Query: 1806 PIPEGHNK 1813
P P G K
Sbjct: 1817 P-PNGEMK 1823
Score = 113 (44.8 bits), Expect = 9.1e-107, Sum P(8) = 9.1e-107
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 2108 PDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKI 2167
P + F ++G +LQ+HDEL+ EV + + +V+ ME A L V L VK+
Sbjct: 2189 PKRKVKGMFCPMRGGF-FILQLHDELLYEVAEEDVVQVAQIVKNEMECAIKLSVKLKVKV 2247
Query: 2168 QVGSTWGSLEPF 2179
++G++WG L+ F
Sbjct: 2248 KIGASWGELKDF 2259
Score = 83 (34.3 bits), Expect = 9.1e-107, Sum P(8) = 9.1e-107
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 1819 STDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTS 1878
ST K L+ L+ HP+ +I E R ++ + + + ++ + ++ Q+
Sbjct: 1851 STSKDILNKLKDLHPLPGLILEWRRISNAITKVVFPLQREKHLNPFLRMERIYPV-SQSH 1909
Query: 1879 TATGRLSMEEPNLQCVEHMVEFKM 1902
TATGR++ EPN+Q V E KM
Sbjct: 1910 TATGRITFTEPNIQNVPRDFEIKM 1933
Score = 61 (26.5 bits), Expect = 9.1e-107, Sum P(8) = 9.1e-107
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 1533 GLAVCWENSPVYYVNLPKD 1551
GLAVCW YY++L K+
Sbjct: 1575 GLAVCWGGKDAYYLSLQKE 1593
Score = 54 (24.1 bits), Expect = 2.1e-49, Sum P(6) = 2.1e-49
Identities = 23/102 (22%), Positives = 40/102 (39%)
Query: 34 DAKITVEVSPSAKGTLDNYLKNSQDDGHTSKQSL-LSRHEVVKRNLSLEI-DKYSKDEKN 91
+A + E A G +N L + TS + + H V + D D ++
Sbjct: 967 EAPQSSEALGQAGGQCENLLNSPGIQEKTSAHATNKTEHSHVANQAFCDFGDSLYLDTQS 1026
Query: 92 QALLSDQAQPQATQKVISRCSSKEGNSEVG-CHMKDGSAHIP 132
+ ++ A ATQ + ++EG++ H G HIP
Sbjct: 1027 EEIIEQMATKNATQGAEAAGITEEGSATQNEPHSTTGGQHIP 1068
Score = 50 (22.7 bits), Expect = 1.7e-87, Sum P(8) = 1.7e-87
Identities = 22/99 (22%), Positives = 40/99 (40%)
Query: 1316 KSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQI 1375
++LG N + P S A + G+ E +P + +S EHS +
Sbjct: 957 QALGTNAGRTEAPQSSEALGQAGGQCENLLNSPGIQEKTSAHATNKTEHSHVANQAFCDF 1016
Query: 1376 SKKVDLESAGEKLLE-------TSDNELSALVEGGSITE 1407
+ L++ E+++E T E + + E GS T+
Sbjct: 1017 GDSLYLDTQSEEIIEQMATKNATQGAEAAGITEEGSATQ 1055
Score = 48 (22.0 bits), Expect = 8.4e-49, Sum P(6) = 8.4e-49
Identities = 26/100 (26%), Positives = 37/100 (37%)
Query: 189 CVSNLLQSGEQT-TCSNAKNIEETQSGFIVKTGNLVPNSSQRVTDSNASLLLQASLRKCD 247
C+ N S +QT TC+ K + E Q+G + V S +T L S
Sbjct: 900 CLEN--HSEKQTNTCTRQKTLTEGQAGI-----SHVTRGSNDLTPIRCERLKLNSKEHDS 952
Query: 248 KSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPG 287
L T A T P + + + C N + SPG
Sbjct: 953 NPCPQALGTNAGRTEAPQSSEALGQAGGQ--CENLLNSPG 990
Score = 46 (21.3 bits), Expect = 4.1e-36, Sum P(4) = 4.1e-36
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 364 KDVIDSVKELSPLP 377
KD+++ +K+L PLP
Sbjct: 1854 KDILNKLKDLHPLP 1867
Score = 42 (19.8 bits), Expect = 3.8e-30, Sum P(4) = 3.8e-30
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 2143 KEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPFQADNYT 2185
+EA +L+ +E A ++L L I++G WG P + ++
Sbjct: 594 REAAALI---VEEAKVILQQDL--IEMGVQWGPHSPLSSSTHS 631
Score = 41 (19.5 bits), Expect = 1.4e-86, Sum P(8) = 1.4e-86
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 1463 LDLEVQDRPNRDPCLVNKDRACNKGPINAINAS 1495
LDL + + P ++ +N+ CN+G I ++ S
Sbjct: 448 LDL-ISEIPLKE---INQKYGCNRGQIQSLQQS 476
Score = 38 (18.4 bits), Expect = 2.1e-104, Sum P(8) = 2.1e-104
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 1498 FDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSP 1542
F F+ W+ F + +K + + S I G + NSP
Sbjct: 1510 FQTFVKEWQCQKRFSISLACEKMTSSTSSKTATIGG-RLKQVNSP 1553
Score = 38 (18.4 bits), Expect = 6.8e-27, Sum P(3) = 6.8e-27
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 850 HAGLTVEEREVVETCYRKGLVRVLTATSTLAAGV 883
+ G+ R+ V+ C R G V + G+
Sbjct: 2091 YKGINHFMRDTVKNCRRDGFVETILGRRRYLPGI 2124
Score = 37 (18.1 bits), Expect = 4.4e-48, Sum P(7) = 4.4e-48
Identities = 13/69 (18%), Positives = 27/69 (39%)
Query: 433 HDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDS----PTNVIKKPVGNEKSD 488
HD ++ + + EK + ++ L GI +T S P + + +++ D
Sbjct: 892 HDTHPVSQCLENHSEKQTNTCTRQKTLTEGQAGISHVTRGSNDLTPIRCERLKLNSKEHD 951
Query: 489 EAGTPSSSG 497
P + G
Sbjct: 952 SNPCPQALG 960
Score = 37 (18.1 bits), Expect = 4.6e-19, Sum P(3) = 4.6e-19
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 963 ILEVVAGGIVQTAEDIHRYVRCTLLNSTK 991
+ EV +VQ A+ + + C + S K
Sbjct: 2214 LYEVAEEDVVQVAQIVKNEMECAIKLSVK 2242
>MGI|MGI:2176740 [details] [associations]
symbol:Helq "helicase, POLQ-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017116 "single-stranded
DNA-dependent ATP-dependent DNA helicase activity" evidence=ISO]
[GO:0017117 "single-stranded DNA-dependent ATP-dependent DNA
helicase complex" evidence=ISO] InterPro:IPR001650
InterPro:IPR010995 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2176740 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
SUPFAM:SSF47794 GO:GO:0017116 CTD:113510 OMA:SRPLENC
OrthoDB:EOG4THVSJ EMBL:BC082601 EMBL:BC109169 EMBL:BC109170
EMBL:AK052427 EMBL:AF436846 IPI:IPI00226287 IPI:IPI00886160
IPI:IPI00890018 RefSeq:NP_001074576.1 UniGene:Mm.21469
ProteinModelPortal:Q2VPA6 SMR:Q2VPA6 STRING:Q2VPA6
PhosphoSite:Q2VPA6 PRIDE:Q2VPA6 Ensembl:ENSMUST00000044684
GeneID:191578 KEGG:mmu:191578 UCSC:uc008yhz.1 UCSC:uc012dzs.1
HOGENOM:HOG000110747 InParanoid:Q2VPA6 NextBio:371088 Bgee:Q2VPA6
Genevestigator:Q2VPA6 GO:GO:0017117 Uniprot:Q2VPA6
Length = 1069
Score = 755 (270.8 bits), Expect = 1.8e-100, Sum P(2) = 1.8e-100
Identities = 207/596 (34%), Positives = 325/596 (54%)
Query: 701 QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIY---SKKMD--VVRTIL 755
QI+GMSAT+ NV + +L+A Y + FRPV L+E++KV + IY S+ D +L
Sbjct: 451 QIIGMSATLNNVEDLQAFLKAEYYTSQFRPVELKEFLKVNDTIYEVDSQAADGMTFSRLL 510
Query: 756 T---AANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812
+ + L DPD +V L EV+ +S L+FC S+K CE+ A + KFL K +N H
Sbjct: 511 SYKYSEALKKMDPDRLVALVTEVIPN-YSCLVFCPSKKNCENVAEMLCKFLSKDYLN-HR 568
Query: 813 SDSEFIDITSAIDALRRCPAG-LDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
+ E ++ I +LR G + PVL+ T+P G+AYHH+GLT EER+++E Y G++
Sbjct: 569 -EKEKCEV---IKSLRNIGNGKVCPVLKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLC 624
Query: 872 VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931
+LT TSTLAAGVNLPARRVI R P + F+ +Y+QM GRAGR GIDT GES+L+ +
Sbjct: 625 LLTCTSTLAAGVNLPARRVILRAPYVANTFLKRNQYKQMVGRAGRAGIDTAGESILLLQE 684
Query: 932 EEVKKIMGLLNESCPPLHSCLS----EDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
++ ++++ L++ PL +C S E G+ L ++ I + DI++++ T
Sbjct: 685 KDKQQVLELISG---PLETCCSHLVEEFTKGIQALFLSLIGLKIAASLGDIYQFMSGTFF 741
Query: 988 NSTKPFQDVVKS----AQDSLRWLCHRKFLEW-----NEDTKL-YSTTPLGRAAFGSSLC 1037
+ KS D+L L + L+ NE + + T LG+A+F ++
Sbjct: 742 GVQQKILLKEKSLWEITVDALEHLTEKGLLQKDSCGDNEGLECHFRITKLGQASFKGAID 801
Query: 1038 PEESLIVLDDLSRAREGFVLASDLHLVYLSTPINV--EVEPDWELYYERFLELSALDQSV 1095
+ DL + EG VL S LHL+YL+TP ++ + EPDW +Y+++F +LS +Q+V
Sbjct: 802 LAYCDTLYRDLKKGLEGLVLESLLHLIYLTTPYDLAAQSEPDWMVYFKQFGQLSPTEQNV 861
Query: 1096 GNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKR 1155
+GVSE ++ + A G +R K D V R
Sbjct: 862 AALLGVSESFIGKKAAGQAVR---KKVDKN--------------------------VVNR 892
Query: 1156 FYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYDLEGL 1214
Y++ +L L++ET V V E F + RG +Q L A F+S V FCE L ++ + L
Sbjct: 893 LYLSFVLYSLLKETNVWSVSEKFNLPRGYIQNLLMGAASFSSCVLHFCEELEEFWVYKAL 952
Query: 1215 IAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
+ + ++++ V+AE++ L + V RA+ LY AG R+ + +A A+ +VK +
Sbjct: 953 LVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYRSIMHLANANPEVLVKTI 1008
Score = 321 (118.1 bits), Expect = 1.8e-100, Sum P(2) = 1.8e-100
Identities = 70/156 (44%), Positives = 99/156 (63%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LPS++ +Y + +GI KLY WQ CL + V +R+NL+Y TS GK+ VAEILML+ L+
Sbjct: 278 LPSKVRDLYVQLKGIKKLYDWQHTCLTLRSVQERKNLIYSLPTSGGKTLVAEILMLQELL 337
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK---DTSVAVCTI 624
K L++LPYV+I EK L LG V Y G++G K S+ + TI
Sbjct: 338 CRQKDVLMILPYVAIVQEKISSLSSFGIELGFFVEEYAGSKGRFPPIKRREKKSLYIATI 397
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
EKA+SLVN ++E RLS +G++V+DELHM+ + +RG
Sbjct: 398 EKAHSLVNALIETSRLSTLGLVVVDELHMIGEGSRG 433
Score = 178 (67.7 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 50/155 (32%), Positives = 84/155 (54%)
Query: 1152 VCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYD 1210
V R Y++ +L L++ET V V E F + RG +Q L A F+S V FCE L ++
Sbjct: 889 VVNRLYLSFVLYSLLKETNVWSVSEKFNLPRGYIQNLLMGAASFSSCVLHFCEELEEFWV 948
Query: 1211 LEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
+ L+ + ++++ V+AE++ L + V RA+ LY AG R+ + +A A+ +VK +
Sbjct: 949 YKALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYRSIMHLANANPEVLVKTI 1008
Query: 1271 FESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAE 1305
S RR A++I + A+ ++ EKAE
Sbjct: 1009 DHLS-------RRQ----ARQIVSSAKMLLHEKAE 1032
Score = 43 (20.2 bits), Expect = 6.7e-23, Sum P(2) = 6.7e-23
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQK 1770
+L + LW I VD L + LLQK
Sbjct: 748 LLKEKSLWEITVDALEHLTEKGLLQK 773
Score = 41 (19.5 bits), Expect = 6.2e-71, Sum P(2) = 6.2e-71
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 534 HVDGVLQR-RNLVYCASTSAGKSFVAEILM--LRRLISTGKMALLVLPYVSICAEKAEHL 590
HVD + QR L C A S ++ L+ + + L P S +K HL
Sbjct: 83 HVDDLEQRYMQLPECGDRDAD-SGTKDLCSAGLKNNLRVTTVINLTDPETSEHGQKQSHL 141
Query: 591 EVLLEP 596
+V EP
Sbjct: 142 DVPAEP 147
Score = 39 (18.8 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 1885 SMEEPNLQCVEHMVEFKMSNEDIYGGNAEVD-HCKI 1919
S+ E + +EH+ E + +D G N ++ H +I
Sbjct: 753 SLWEITVDALEHLTEKGLLQKDSCGDNEGLECHFRI 788
>DICTYBASE|DDB_G0279107 [details] [associations]
symbol:DDB_G0279107 "Helicase POLQ-like"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0279107 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000027 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 SUPFAM:SSF47794 GO:GO:0008026 RefSeq:XP_641869.1
ProteinModelPortal:Q54X98 EnsemblProtists:DDB0205039 GeneID:8621875
KEGG:ddi:DDB_G0279107 InParanoid:Q54X98 OMA:LTNDERE
ProtClustDB:CLSZ2430718 Uniprot:Q54X98
Length = 1238
Score = 500 (181.1 bits), Expect = 9.2e-98, Sum P(6) = 9.2e-98
Identities = 121/319 (37%), Positives = 184/319 (57%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTIL-TAA 758
+QI+GMSAT+PN+ + W + +Y+ FRPVPL EYIK+G+ +Y K+ ++V+++ T A
Sbjct: 607 IQIIGMSATIPNIDNLQKWFRGGVYQGTFRPVPLTEYIKIGDKLYDKENNLVKSLQGTEA 666
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
N +H ++LC EVV + HSVLIFC+S+ S A ++K + ++ + E +
Sbjct: 667 N-----ENHTLQLCLEVVPK-HSVLIFCASKLLTVSLALQLAKSFPQAILDNRRDEREIL 720
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
I++ C D + + +GVAYH+A LT +EREV+E +++ + VL ATST
Sbjct: 721 --IQLIESSNGCKVEED--FKRMIMAGVAYHNADLTNDEREVIERGFKERSLLVLCATST 776
Query: 879 LAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICK---PEEVK 935
L+ GVNLPARRVI R PR+GR+ +D YRQM GRAGR GID GES+L+C P++ K
Sbjct: 777 LSTGVNLPARRVILRSPRMGRNVLDIRSYRQMVGRAGRAGIDEFGESILMCDHFAPDKAK 836
Query: 936 KIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNS------ 989
K LL PL S ++++ IL+ + GI I + T ++
Sbjct: 837 K---LLTSPMDPLLSSINKNVESFQKIILDSICSGIASDKFSILSFFSYTFYSTHLLPPK 893
Query: 990 -TKPFQDVVKSAQDSLRWL 1007
P++ + K DS+ L
Sbjct: 894 DMTPYEYIRKLVNDSVEAL 912
Score = 343 (125.8 bits), Expect = 9.2e-98, Sum P(6) = 9.2e-98
Identities = 67/165 (40%), Positives = 99/165 (60%)
Query: 496 SGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKS 555
S +++C LP + +IYK+RG+ +LY WQ ECL +L NL+Y TS GK+
Sbjct: 425 SNDIEECCVKIFGLPKSVGTIYKRRGMKQLYDWQKECLSDSNLLLGENLIYSLPTSGGKT 484
Query: 556 FVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615
VAEI++ R L+ K +L + P+VSI EK E + L V Y+G G +
Sbjct: 485 LVAEIILFRNLLIKNKKSLFIFPFVSIVCEKTESMHEFSSALQIPVEGYHGCNGTIPVLP 544
Query: 616 DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
+ +CTIEKAN +VN+++E+GRL +IG +V+DE+HM+ D RG
Sbjct: 545 GKRLLICTIEKANIIVNQLIEDGRLLDIGCVVVDEIHMIGDGERG 589
Score = 243 (90.6 bits), Expect = 9.2e-98, Sum P(6) = 9.2e-98
Identities = 61/158 (38%), Positives = 91/158 (57%)
Query: 1154 KRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEG 1213
+RF+ A++L+ L+ E P+ V + + RG VQ+L A A MVS+FC++LGW +LE
Sbjct: 1056 RRFFSAMVLNDLIHEVPLSMVSTKYNLNRGTVQSLMNGAASHAWMVSLFCKKLGWVELEA 1115
Query: 1214 LIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFES 1273
L+ + R+ GVR EIV L I VK +RARAL+ AG +T +IA AS E+ KA+
Sbjct: 1116 LVNLYIQRLDKGVRHEIVPLVEINGVKQARARALWAAGFKTVKSIALASPEELNKAV--- 1172
Query: 1274 SSWIAEAQRRVQLGVAKKIKNGARKIVLEKAEEARIAA 1311
+ + + +A I A K++ K+EE R A
Sbjct: 1173 -----KLGKFNSISIAATIIREAGKLLERKSEELRAKA 1205
Score = 110 (43.8 bits), Expect = 9.2e-98, Sum P(6) = 9.2e-98
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 1017 EDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASD-LHLVYLSTPI-NVEV 1074
E++ Y TPLG A F S L + + + D+L + G V+ S+ LH+ Y+ +P+ N+
Sbjct: 946 EESIRYEYTPLGYACFRSGLSIKNAKFLYDELRIIQNGAVVISEQLHMCYIISPVHNIPE 1005
Query: 1075 EPDWELYYERFLELSALDQSVGNQVGVSEPYL 1106
PD + Y + +L Q V + +S+ Y+
Sbjct: 1006 IPDLDQYGKFLSKLKGPKQLVAKLLEISDQYV 1037
Score = 46 (21.3 bits), Expect = 2.5e-22, Sum P(5) = 2.5e-22
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 2067 NKEKSKAQRQAVNSICQGSAADIIKIAMINIHS 2099
NK Q+ ++SIC G A+D K ++++ S
Sbjct: 851 NKNVESFQKIILDSICSGIASD--KFSILSFFS 881
Score = 43 (20.2 bits), Expect = 3.7e-68, Sum P(4) = 3.7e-68
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 480 KPVGNEKSDEA-GTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGV 538
KP N KS+ G S + + LSS L + S K I K +Q + + G+
Sbjct: 134 KPYVNNKSEGLIGASSYRSVSNNSTALSSTLKKQSLSTNNKTNIPK-NNYQNDNKKIIGI 192
Query: 539 LQRRN 543
+ N
Sbjct: 193 INTHN 197
Score = 39 (18.8 bits), Expect = 9.2e-98, Sum P(6) = 9.2e-98
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 118 SEVGCHMKDGSAHIPESLELKQFPTDFLS 146
S+ ++ GS+ S+EL+ F D S
Sbjct: 294 SQFDYDVESGSSESESSIELENFDFDLAS 322
Score = 39 (18.8 bits), Expect = 2.5e-22, Sum P(5) = 2.5e-22
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 1439 KIPDTTLSVQLGKNAIGTITSNR--DLDLEVQDRPNRDPCLVNKD 1481
K+ +L++QL K+ I NR + ++ +Q + + C V +D
Sbjct: 691 KLLTVSLALQLAKSFPQAILDNRRDEREILIQLIESSNGCKVEED 735
Score = 39 (18.8 bits), Expect = 3.0e-18, Sum P(5) = 3.0e-18
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 453 IVHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGM 498
+V++ + G I+ + P KK +G K D G P+ +
Sbjct: 904 LVNDSVEALIKSGHIQISCNQPDPNDKKTIGTAKFDLDGKPTEESI 949
Score = 38 (18.4 bits), Expect = 9.2e-98, Sum P(6) = 9.2e-98
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 247 DKSSKSTLNTTACYTPEPSIVKTYVRETPKS 277
+ + KST TTA T + + T KS
Sbjct: 362 NNNKKSTTTTTAITTTKTTTTTTNTSSPSKS 392
>UNIPROTKB|E3W980 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 GO:GO:0004386 EMBL:AC096768
HGNC:HGNC:18536 IPI:IPI00965172 ProteinModelPortal:E3W980
SMR:E3W980 Ensembl:ENST00000510985 UCSC:uc010ikb.3
ArrayExpress:E3W980 Bgee:E3W980 Uniprot:E3W980
Length = 1034
Score = 769 (275.8 bits), Expect = 4.1e-96, Sum P(4) = 4.1e-96
Identities = 206/597 (34%), Positives = 322/597 (53%)
Query: 701 QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYS--KKMDVVRTILTAA 758
QI+GMSAT+ NV + +LQA Y + FRPV L+EY+K+ + IY K + T
Sbjct: 425 QIIGMSATLNNVEDLQKFLQAEYYTSQFRPVELKEYLKINDTIYEVDSKAENGMTFSRLL 484
Query: 759 N------LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812
N L DPDH+V L EV+ +S L+FC S+K CE+ A + KFL K + H
Sbjct: 485 NYKYSDTLKKMDPDHLVALVTEVIPN-YSCLVFCPSKKNCENVAEMICKFLSKEYLK-HK 542
Query: 813 SDSEFIDITSAIDALRRCPAG-LDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
+ E ++ I L+ G L PVL+ T+P GVAYHH+GLT +ER+++E Y G++
Sbjct: 543 -EKEKCEV---IKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLC 598
Query: 872 VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931
+ T TSTLAAGVNLPARRVI R P + ++F+ +Y+QM GRAGR GIDT GES+LI +
Sbjct: 599 LFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQE 658
Query: 932 EEVKKIMGLLNESCPPLHSCLS----EDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
++ ++++ L+ + PL +C S E G+ L ++ I +DI+ ++ T
Sbjct: 659 KDKQQVLELITK---PLENCYSHLVQEFTKGIQTLFLSLIGLKIATNLDDIYHFMNGTFF 715
Query: 988 NSTKPFQDVVKS----AQDSLRWLCHRKFLEWN-----EDTKLYS--TTPLGRAAFGSSL 1036
+ KS +SLR+L + L+ + E+ Y+ T LGRA+F ++
Sbjct: 716 GVQQKVLLKEKSLWEITVESLRYLTEKGLLQKDTIYKSEEEVQYNFHITKLGRASFKGTI 775
Query: 1037 CPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINV--EVEPDWELYYERFLELSALDQS 1094
I+ DL + EG VL S LHL+YL+TP ++ + PDW +Y+ +F +LS +Q+
Sbjct: 776 DLAYCDILYRDLKKGLEGLVLESLLHLIYLTTPYDLVSQCNPDWMIYFRQFSQLSPAEQN 835
Query: 1095 VGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCK 1154
V +GVSE ++ + A G + GK + N V
Sbjct: 836 VAAILGVSESFIGKKASGQAI--------------GKK-----VDKN----------VVN 866
Query: 1155 RFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYDLEG 1213
R Y++ +L L++ET + V E F + RG +Q L F+S V FCE L ++
Sbjct: 867 RLYLSFVLYTLLKETNIWTVSEKFNMPRGYIQNLLTGTASFSSCVLHFCEELEEFWVYRA 926
Query: 1214 LIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
L+ + ++++ V+AE++ L + V RA+ LY AG ++ + +A A+ +V+ +
Sbjct: 927 LLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTI 983
Score = 196 (74.1 bits), Expect = 4.1e-96, Sum P(4) = 4.1e-96
Identities = 39/79 (49%), Positives = 55/79 (69%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LPS++ +Y + +GI KLY WQ CL ++ V +R+NL+Y TS GK+ VAEILML+ L+
Sbjct: 319 LPSKVRDLYAQFKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELL 378
Query: 568 STGKMALLVLPYVSICAEK 586
K L++LPYV+I EK
Sbjct: 379 CCRKDVLMILPYVAIVQEK 397
Score = 169 (64.5 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
Identities = 47/155 (30%), Positives = 82/155 (52%)
Query: 1152 VCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYD 1210
V R Y++ +L L++ET + V E F + RG +Q L F+S V FCE L ++
Sbjct: 864 VVNRLYLSFVLYTLLKETNIWTVSEKFNMPRGYIQNLLTGTASFSSCVLHFCEELEEFWV 923
Query: 1211 LEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
L+ + ++++ V+AE++ L + V RA+ LY AG ++ + +A A+ +V+ +
Sbjct: 924 YRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTI 983
Query: 1271 FESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAE 1305
S RR AK+I + A+ ++ EKAE
Sbjct: 984 DHLS-------RRQ----AKQIVSSAKMLLHEKAE 1007
Score = 48 (22.0 bits), Expect = 4.1e-96, Sum P(4) = 4.1e-96
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 444 DVQEKDSVLIVHERK-LDISSQGIDSITSDSPTNVIKKPVGN-EKSDEAGTPSSSGMLKD 501
++Q + L H K D S +++ + P N I++P N E S + T S K
Sbjct: 205 NLQNSSNDLGDHSMKERDWKSSSHNTVNEELPHNCIEQPQQNDESSSKVRTSSDMNRRKS 264
Query: 502 CLD 504
D
Sbjct: 265 IKD 267
Score = 45 (20.9 bits), Expect = 6.8e-94, Sum P(3) = 6.8e-94
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 32 EKDAKITVEVSPSAKGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNL-SLEIDKYSK 87
E +K+ + + ++ ++LKN+ ++ + SR + +K L S EI+ K
Sbjct: 248 ESSSKVRTSSDMNRRKSIKDHLKNAMTGNAKAQTPIFSRSKQLKDTLLSEEINVAKK 304
Score = 45 (20.9 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 21/67 (31%), Positives = 29/67 (43%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYL--EKKAYTLAGMKF---SLYTAADIA--N 1797
+L + LW I V+ L + LLQK Y E+ Y K S D+A +
Sbjct: 722 LLKEKSLWEITVESLRYLTEKGLLQKDTIYKSEEEVQYNFHITKLGRASFKGTIDLAYCD 781
Query: 1798 VLYGHLK 1804
+LY LK
Sbjct: 782 ILYRDLK 788
Score = 42 (19.8 bits), Expect = 4.1e-96, Sum P(4) = 4.1e-96
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 163 KLKDHKRHSSPSLLGGEDNKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGF 215
+L +HK+H++ ++ K K ++ + G T K+ E QSG+
Sbjct: 132 QLPEHKKHATDFATENLCSESIKNKLSITTI---GNLTELQTDKHTEN-QSGY 180
>WB|WBGene00021905 [details] [associations]
symbol:helq-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IGI] [GO:0051117 "ATPase
binding" evidence=IPI] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0000712 GO:GO:0017116
OMA:SRPLENC EMBL:FO080183 RefSeq:NP_001022911.1
ProteinModelPortal:H2KY86 SMR:H2KY86 EnsemblMetazoa:Y55B1AL.3a
GeneID:175210 KEGG:cel:CELE_Y55B1AL.3 CTD:175210
WormBase:Y55B1AL.3a Uniprot:H2KY86
Length = 923
Score = 612 (220.5 bits), Expect = 1.3e-82, Sum P(2) = 1.3e-82
Identities = 196/609 (32%), Positives = 324/609 (53%)
Query: 701 QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIY--SKKMDVVRT-ILTA 757
QIVGMSAT+PN+ + L+A +Y TNFRPV L E++K+G ++ S+ D+ L
Sbjct: 323 QIVGMSATLPNIDDLKFALRAFVYSTNFRPVELTEFVKIGQTMHQVSENGDLNPAGDLPT 382
Query: 758 ANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSE- 816
NL DPD I +L +++ + +S +IFC ++K CE+ A ++K L ++S+
Sbjct: 383 NNLKSTDPDGICQLLAKLIPK-NSAVIFCPNKKNCENVAVLIAKTLPAHIRQAKRAESDA 441
Query: 817 FIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
F+ + + R +D VL++ + SGVAYHH+GLT +ER+ VE + +GL+ V+ AT
Sbjct: 442 FLQSYLSDNDDER----MDAVLKQCILSGVAYHHSGLTQDERKCVEAAFMEGLIYVVCAT 497
Query: 877 STLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP-EEVK 935
STLAAGVNLP RRVI + P +GR+ + +Y QMAGRAGR G DTKG+ + I K EE +
Sbjct: 498 STLAAGVNLPVRRVIIKAPMVGRERLGKAQYLQMAGRAGRAGFDTKGDCITIIKAGEEER 557
Query: 936 KIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQD 995
+L P S LS +++ M IL+ V + + E+I VR +L + + ++
Sbjct: 558 WFREMLKSDIPRCMSSLSSEES-MGSFILDCVVLKLAENIEEIMTAVRYSLFYAQESPEN 616
Query: 996 VVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRA--RE 1053
+ K + S++ L F+ + ++ P +A SS+ I DL A
Sbjct: 617 IRKLVESSVKRLEEHYFITIEPLEQDVASEPSAQA---SSIPRVPGKISPSDLGNAVFNA 673
Query: 1054 GFVL--ASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAH 1111
GF A+ LH +S+ +N V + ++ ++ +Q V N ++ + M +
Sbjct: 674 GFDPDEATRLHADLVSS-LNQGVI--FASHFHLLFIITPYEQ-VCN---INWDLFLLMYN 726
Query: 1112 GAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPV 1171
P L + GL K IT ++ A T R+ R Y+AL+L ++ P+
Sbjct: 727 ALPSSERKLLAEC--GLEEKFILEAIITRVDLT--AGTPRM--RLYIALMLQKIWNHEPM 780
Query: 1172 LEVCETFKVARGMVQA-LQENAGRFASMVSVFCERLG-WYDLEGLIAKFQNRVSFGVRAE 1229
V E F V +G +QA LQ + + AS ++ F E++ + L L+ + R+S + E
Sbjct: 781 YTVAERFGVEKGWLQATLQSSISQAAS-IAKFSEKITTMWPLRKLLPELVQRLSEAAQPE 839
Query: 1230 IVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL-----FESSSWIAEAQRRV 1284
++ L T+ +K +RA L+KAG +T IA A+ ++V+ L +++S IA A+ +
Sbjct: 840 LLPLMTVDGIKKARAAILFKAGYKTVGMIARANPLKLVQELGTIRMAQANSIIASARMVL 899
Query: 1285 QLGVAKKIK 1293
+ V +K++
Sbjct: 900 RDQVDEKME 908
Score = 302 (111.4 bits), Expect = 1.3e-82, Sum P(2) = 1.3e-82
Identities = 66/162 (40%), Positives = 92/162 (56%)
Query: 503 LDLSSWLPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEIL 561
LD S LP +Y+K + + K Y WQ ECL +L N + T AGK+ +AE+L
Sbjct: 145 LDPSKCLPERDMEMYRKIKKLDKFYDWQQECLSDKRLLDGENCILSLPTGAGKTLIAEVL 204
Query: 562 MLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG---SLPKDTS 618
MLR I + A+LVLPYV+I EK L + G ++ Y N+G K S
Sbjct: 205 MLREAIVRKRNAILVLPYVAIVQEKISALAPFEDAFGINIEEYASNKGRFPPIKRRKRVS 264
Query: 619 VAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
V V TIEKAN L+N ++ +G+L +G++V+DELHM+ D RG
Sbjct: 265 VYVATIEKANMLINSLITQGQLDRVGMVVVDELHMIGDGGRG 306
Score = 42 (19.8 bits), Expect = 9.8e-20, Sum P(3) = 9.8e-20
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 1498 FDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIH 1532
F+ D EAT +H D S N GV+F H
Sbjct: 671 FNAGFDPDEATR-----LHADLVSSLNQGVIFASH 700
Score = 40 (19.1 bits), Expect = 5.3e-55, Sum P(2) = 5.3e-55
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 384 LFEDKNLKGTKP-GCGAADTSEAMMFRDGVVSEKGSV 419
L + +N + P G G +E +M R+ +V ++ ++
Sbjct: 181 LLDGENCILSLPTGAGKTLIAEVLMLREAIVRKRNAI 217
Score = 38 (18.4 bits), Expect = 9.8e-20, Sum P(3) = 9.8e-20
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 1359 PVPMEHSDKPSLEANQISKKVDLESAGEKLLETSDNELSALVEGGSITELQQKFDAEN 1416
PV + K +Q+S+ DL AG+ L T N L + G I +L K +N
Sbjct: 352 PVELTEFVKIGQTMHQVSENGDLNPAGD--LPT--NNLKSTDPDG-ICQLLAKLIPKN 404
>UNIPROTKB|F1NYH9 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:AADN02009041 IPI:IPI00596471
Ensembl:ENSGALT00000018274 Uniprot:F1NYH9
Length = 995
Score = 686 (246.5 bits), Expect = 2.4e-78, Sum P(2) = 2.4e-78
Identities = 176/500 (35%), Positives = 274/500 (54%)
Query: 702 IVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIY---SKKMD--VVRTILT 756
+VGMSAT+ NV + +LQA Y NFRPV L+EYIK+ + IY SK + +L
Sbjct: 400 VVGMSATLNNVGDLQKFLQAEYYTKNFRPVELKEYIKIRDTIYEVDSKAENGFTFSRLLN 459
Query: 757 ---AANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813
+++L DPDHIV L EV+ + +S LIFC ++K CE+ A V K+L K H
Sbjct: 460 FKYSSSLEKADPDHIVALVTEVIPK-YSCLIFCPTKKNCENVATMVCKYLNK-EFRAHR- 516
Query: 814 DSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVL 873
+ E D+ + + + PVL +T+P GVAYHH+GLT +ER+ +E Y +G++ +L
Sbjct: 517 EKEKQDLIKNLKDIGN--GSICPVLRQTIPFGVAYHHSGLTNDERKSIEEAYSRGVLCLL 574
Query: 874 TATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933
T+TLAAGVNLPARRVI R P + +F+ +Y+QM GRAGR GID GES+L+ + ++
Sbjct: 575 ACTATLAAGVNLPARRVILRAPYVASEFLKKNQYKQMIGRAGRAGIDNAGESILVVQEKD 634
Query: 934 VKKIMGLLNESCPPLHSCLS----EDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLN- 988
+ L+ PL +C S E GM + +L +V I T E+++ ++ TLL
Sbjct: 635 KHLVRDLITS---PLENCYSNLLPEITKGMQYLLLSLVGLKIAVTQEEVYSFMCHTLLGV 691
Query: 989 ------STKPFQDVVKSAQDSL--RWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEE 1040
K ++V+ ++L + L K ++ N + L + T LG+A + S+
Sbjct: 692 QQQLLLKEKSLSEIVRDELENLIEKGLLKGKIMDQNSKSTL-TVTLLGKATYKGSIDVSY 750
Query: 1041 SLIVLDDLSRAREGFVLASDLHLVYLSTPINV--EVEPDWELYYERFLELSALDQSVGNQ 1098
++ +L + EG VL S LHL+YL+TP ++ PDW +Y +F +LS+ +Q V +
Sbjct: 751 CNLLYKELRKGLEGLVLESSLHLLYLATPYDMVSNCSPDWMIYLRQFNQLSSAEQKVADM 810
Query: 1099 VGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLG--ITSNNMLSDAQTLRVCKRF 1156
VGV E ++ + A G +R K DST L + L + N+ S ++ + + +
Sbjct: 811 VGVPESFIAKKASGQAIR---KNVDSTAVNRLYLSFVLYALLKETNVWSVSEKFNMSRGY 867
Query: 1157 YVALILSRLVQETPVLEVCE 1176
L+ S + +L CE
Sbjct: 868 VQNLLTSAASFASCILHFCE 887
Score = 353 (129.3 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 102/330 (30%), Positives = 161/330 (48%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LPS++ + ++ RGI LY WQ +CL + + QR+NL+Y TS GK+ VAEIL+L+ L+
Sbjct: 226 LPSKVKHLLRQFRGIETLYEWQHDCLTLKSLQQRKNLIYSLPTSGGKTLVAEILILQELL 285
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK---DTSVAVCTI 624
K L++LPYV+I EK L LG V Y G++G K S+ + TI
Sbjct: 286 CRQKDVLMILPYVAIVQEKVWGLSSFGIELGFLVEEYAGSKGRFPPIKRRIKKSLYIATI 345
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXX 684
EK ++LVN ++E R+ ++G++V+DELHM+ + +RG YA+
Sbjct: 346 EKGHALVNSLIETDRIDDLGLVVVDELHMIGEGSRGAVLEMTLAKILYASKNTHVVGMSA 405
Query: 685 XXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQA--ALYETNFRPVPLEEYIKVGNA 742
D LQ + V + ++++ +YE + + + ++ N
Sbjct: 406 TLNNV----GDLQKFLQAEYYTKNFRPVE-LKEYIKIRDTIYEVDSKAENGFTFSRLLNF 460
Query: 743 IYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF 802
YS ++ DPDHIV L EV+ + +S LIFC ++K CE+ A V K+
Sbjct: 461 KYSSSLEKA------------DPDHIVALVTEVIPK-YSCLIFCPTKKNCENVATMVCKY 507
Query: 803 L-KKFSINVHSSDSEFIDITSAIDALRRCP 831
L K+F + + I I CP
Sbjct: 508 LNKEFRAHREKEKQDLIKNLKDIGNGSICP 537
Score = 184 (69.8 bits), Expect = 2.4e-78, Sum P(2) = 2.4e-78
Identities = 46/153 (30%), Positives = 83/153 (54%)
Query: 1155 RFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYDLEG 1213
R Y++ +L L++ET V V E F ++RG VQ L +A FAS + FCE L ++ +
Sbjct: 838 RLYLSFVLYALLKETNVWSVSEKFNMSRGYVQNLLTSAASFASCILHFCEELEEFWVYKA 897
Query: 1214 LIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFES 1273
L+ + R+++ V+ E++ L + V +RA+ LY AG +T +A A+ +VK +
Sbjct: 898 LLTELTKRLTYCVKTELIPLMEVAGVLEARAKQLYNAGYKTLAHLANANPETLVKTI--- 954
Query: 1274 SSWIAEAQRRVQLGVAKKIKNGARKIVLEKAEE 1306
++ Q + + AK + + + + E+ EE
Sbjct: 955 -EHLSRRQAKQMVSSAKMLLSEKAEALQEEVEE 986
Score = 40 (19.1 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 1251 GLRTPLAIAEASISEIVKALFES 1273
G++ L + E S+SEIV+ E+
Sbjct: 690 GVQQQLLLKEKSLSEIVRDELEN 712
Score = 38 (18.4 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 227 SQRVTDSNASLLLQASLRK--CDKSSKSTLNTT 257
S+ V D +L+ + L+ D++SKSTL T
Sbjct: 703 SEIVRDELENLIEKGLLKGKIMDQNSKSTLTVT 735
>ZFIN|ZDB-GENE-060503-421 [details] [associations]
symbol:helq "helicase, POLQ-like" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR010995 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060503-421 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
EMBL:BX649525 CTD:113510 IPI:IPI00799443 RefSeq:XP_691411.3
UniGene:Dr.86132 Ensembl:ENSDART00000109412 GeneID:562952
KEGG:dre:562952 NextBio:20884669 Uniprot:F1Q4P2
Length = 1010
Score = 690 (248.0 bits), Expect = 3.5e-77, Sum P(2) = 3.5e-77
Identities = 168/440 (38%), Positives = 247/440 (56%)
Query: 701 QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYS--KKMDVVRTILTAA 758
Q++GMSAT+ NV + +L+A Y NFRPV L+EY+K+ ++IY K + T
Sbjct: 413 QVIGMSATLGNVKDLQSFLRAENYTNNFRPVELKEYVKIKDSIYEVDPKEEACFTFSRLL 472
Query: 759 NL---GGK---DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812
N G DPDHI+ L EV+ + S LIFC+++K CE+ A + K+L K I H
Sbjct: 473 NFKYSSGMQKMDPDHIIALATEVIPQ-QSCLIFCATKKNCENLAGMICKYLNKEFIK-HK 530
Query: 813 SDSEFIDITSAIDALRRCPAG-LDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
+ I + L+ G L PVL++T+P G+AYHH+GLT +ER++VE Y G++
Sbjct: 531 EAEKAI----LLGELKSSGNGSLCPVLQKTIPFGLAYHHSGLTSDERKLVEEAYSSGVLC 586
Query: 872 VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931
+LT TSTLAAG+NLPARRVI R P + DF+ ++Y+QM GRAGR GID GES+LI +
Sbjct: 587 LLTCTSTLAAGINLPARRVILRSPYVAADFLKRSQYKQMVGRAGRAGIDAMGESILILQD 646
Query: 932 EEVKKIMGLLNESCPPLHSCLS----EDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
+++ LL C P+ C S + G+ IL ++ I T E + ++ T L
Sbjct: 647 KDINTAKKLL---CAPMEKCYSNLLHDGGRGLLSLILSLIGLKITTTVEQVKDLMKGTFL 703
Query: 988 NSTKPFQDVVKSAQD----SLRWLCHRKFLEWNEDTK---LYSTTPLGRAAFGSSLCPEE 1040
+ KS D S++ L + +E + D + T LGRA + S+
Sbjct: 704 GVQEAQVSPEKSLWDLTVESIQTLKQKNLIEVSSDENNQNILQITRLGRATYKGSVDLSY 763
Query: 1041 SLIVLDDLSRAREGFVLASDLHLVYLSTPINV--EVEPDWELYYERFLELSALDQSVGNQ 1098
++ DLS+ EG +L S LHLVYL TP ++ + +PDW +Y+ +F LSA +Q +
Sbjct: 764 CDVLYRDLSKGLEGLLLNSFLHLVYLVTPYDMVHQCKPDWMIYFRQFTNLSAAEQKMATT 823
Query: 1099 VGVSEPYLMRMAHGAPMRIS 1118
VGV E ++ R A G +R S
Sbjct: 824 VGVPESFVARKAAGQSVRKS 843
Score = 366 (133.9 bits), Expect = 3.9e-41, Sum P(2) = 3.9e-41
Identities = 98/302 (32%), Positives = 147/302 (48%)
Query: 509 LPSEICS-IYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LPS++ I++ +GI LY WQ CL +D + QRRNL+Y TS GK+ VAEIL+ + L+
Sbjct: 240 LPSKVKDLIFRLKGIQDLYEWQKTCLSLDSIQQRRNLIYSLPTSGGKTLVAEILIFKELL 299
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK---DTSVAVCTI 624
K ALL+LPY+S+ EK L L V Y G++G K S+ + TI
Sbjct: 300 CRKKDALLILPYISLVQEKVRGLSSFGIELDFLVEEYAGSKGKFPPVKRRNKNSLYITTI 359
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXX 684
EK +SLVN ++E RL IG++V+DELHM+ D +RG Y +
Sbjct: 360 EKGHSLVNSLIENDRLDNIGLVVVDELHMLGDGSRGAILEMTLSKILYMSKSTQVIGMSA 419
Query: 685 XXXXXXXXKAD-PAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAI 743
++ A + + D ++YE + + + ++ N
Sbjct: 420 TLGNVKDLQSFLRAENYTNNFRPVELKEYVKIKD----SIYEVDPKEEACFTFSRLLNFK 475
Query: 744 YSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFL 803
YS M + DPDHI+ L EV+ + S LIFC+++K CE+ A + K+L
Sbjct: 476 YSSGMQKM------------DPDHIIALATEVIPQ-QSCLIFCATKKNCENLAGMICKYL 522
Query: 804 KK 805
K
Sbjct: 523 NK 524
Score = 170 (64.9 bits), Expect = 3.5e-77, Sum P(2) = 3.5e-77
Identities = 45/136 (33%), Positives = 78/136 (57%)
Query: 1152 VCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYD 1210
V R Y+AL+L L++ET + V E F++ RG VQ L +A F S V F E L ++
Sbjct: 848 VVNRLYLALVLFSLLKETNLWIVSERFQLTRGFVQTLLSSASAFGSSVLHFTEELEEFWA 907
Query: 1211 LEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEA---SISEIV 1267
+ L+++ R+++ V+AE++ L + V RA+ LY AG +T +A A ++ + +
Sbjct: 908 YKALLSELTRRLTYCVQAELIPLMEVSGVLEHRAKQLYSAGYKTLSHLANADPQTLVQTI 967
Query: 1268 KALFESSSW--IAEAQ 1281
+ LF+ ++ IA A+
Sbjct: 968 ENLFKKQAYQIIASAK 983
Score = 41 (19.5 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 1279 EAQRRVQLGVAKKIKNGARKIVLEK 1303
EA++ + LG K NG+ VL+K
Sbjct: 531 EAEKAILLGELKSSGNGSLCPVLQK 555
Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 38 TVE-VSPSAKGTLDNYLKNSQDDGHTSKQSL-LSRHEVVKRNLSLEIDKYSKDEKNQALL 95
TVE V KGT ++ +Q S L + + +K+ +E+ S DE NQ +L
Sbjct: 690 TVEQVKDLMKGTFLG-VQEAQVSPEKSLWDLTVESIQTLKQKNLIEV---SSDENNQNIL 745
Query: 96 SDQAQPQATQK 106
+AT K
Sbjct: 746 QITRLGRATYK 756
>FB|FBgn0002899 [details] [associations]
symbol:mus301 "mutagen-sensitive 301" species:7227
"Drosophila melanogaster" [GO:0007294 "germarium-derived oocyte
fate determination" evidence=IGI;IMP] [GO:0008298 "intracellular
mRNA localization" evidence=IMP;TAS] [GO:0048477 "oogenesis"
evidence=IGI;TAS] [GO:0009949 "polarity specification of
anterior/posterior axis" evidence=IMP] [GO:0030717 "karyosome
formation" evidence=IMP] [GO:0009951 "polarity specification of
dorsal/ventral axis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0009994 "oocyte differentiation" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016321 "female meiosis chromosome segregation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009949 GO:GO:0007294 EMBL:AE014296 GO:GO:0006417
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 GO:GO:0008298
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0030717 GO:GO:0016321
GO:GO:0008026 OMA:SRPLENC GO:GO:0009951 EMBL:BT011090
RefSeq:NP_648178.1 UniGene:Dm.15493 SMR:Q9VSE2 IntAct:Q9VSE2
STRING:Q9VSE2 EnsemblMetazoa:FBtr0076689 GeneID:38905
KEGG:dme:Dmel_CG7972 UCSC:CG7972-RA CTD:38905 FlyBase:FBgn0002899
InParanoid:Q9VSE2 OrthoDB:EOG4MKKXB GenomeRNAi:38905 NextBio:810944
Uniprot:Q9VSE2
Length = 1051
Score = 526 (190.2 bits), Expect = 2.3e-76, Sum P(4) = 2.3e-76
Identities = 143/389 (36%), Positives = 214/389 (55%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYS-----KKMDVV--- 751
+QIVGMSAT+ N++ ++ +L A +Y FRPV L+EYIK G + + ++ +
Sbjct: 419 IQIVGMSATIGNLSEISSFLNADVYTRGFRPVELKEYIKCGPDLLEINSAGQTLEEIFVP 478
Query: 752 -RTILTAANLGGK--DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSI 808
R++ + K DPDH+ L E E H L+FC SRK CE+ A +S+ + K
Sbjct: 479 SRSVEYNYSEAVKRADPDHLAGLISECAPE-HCCLVFCPSRKNCENVALLLSRIVPKHKF 537
Query: 809 NVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKG 868
H SE +D+ A+D + C L PVL +TLP G+AYHH+GLT +ER+ +ET YR G
Sbjct: 538 FEHRR-SEKLDLMDALDKM--CGI-LSPVLAKTLPYGIAYHHSGLTTDERKYIETAYRFG 593
Query: 869 LVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLI 928
+V V+ TSTLAAGVNLPA+RVI R P +G++F+ +Y+QM GRAGR G+ GES+LI
Sbjct: 594 VVTVICCTSTLAAGVNLPAKRVIIRAPYVGQEFLTLCKYKQMVGRAGRAGLGEAGESILI 653
Query: 929 CKPEEVKKIMGLLNESCPPLHSCLSE-DKN---GMTHAILEVVAGGIVQTAEDIHRYVRC 984
+ ++ ++G + S P+ LS D+N G+ IL VV + + D++R V
Sbjct: 654 AQSKD-NLLVGQMLFS--PMDKALSSLDQNEAVGLQSLILSVVGLNLAECRRDLNRLVNS 710
Query: 985 TLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIV 1044
TLL+ KS + ++ + R E ++ L P ++ SS +I
Sbjct: 711 TLLSVQ------AKSLEVAVNEIVLRILREMFKNKVLQLAEPQAKSKINSS-----DIIT 759
Query: 1045 LDDLSRAREGFVLASDLHLVY-LSTPINV 1072
D+S+A A D L+ STP +
Sbjct: 760 SQDVSQANRP---AGDRRLLIGQSTPFKL 785
Score = 279 (103.3 bits), Expect = 2.3e-76, Sum P(4) = 2.3e-76
Identities = 62/158 (39%), Positives = 92/158 (58%)
Query: 509 LPSEICS-IYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LP ++ I + +GI+ LY WQ ECL++ + QR+NL+Y TS GK+ VAEILMLR L+
Sbjct: 247 LPDKVKKMILEHKGINSLYEWQDECLNLPAIRQRKNLIYALPTSGGKTLVAEILMLRELL 306
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP-----KDTSVAVC 622
+ L +LPYVSI EK + L V Y G G P K S+ +
Sbjct: 307 CRERNVLFILPYVSIVQEKVSAMSPFAIDLDFIVEEY--TAGKGKCPPQPRRKRRSLFIA 364
Query: 623 TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
+IEK L++ +++ R EIG++V+DELH++ ++ RG
Sbjct: 365 SIEKGAVLMDSLIDVQRPHEIGLVVVDELHLIGEKGRG 402
Score = 122 (48.0 bits), Expect = 2.3e-76, Sum P(4) = 2.3e-76
Identities = 43/152 (28%), Positives = 73/152 (48%)
Query: 1155 RFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYDLEG 1213
R Y LIL+ ++ P+ V + V RG +Q L + AS + CE L ++ +
Sbjct: 892 RLYKVLILADILNLLPIPSVASKYNVERGTLQHLISQSTAAASAIVRLCEELEEFWCYKP 951
Query: 1214 LIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFES 1273
L + +++ E+ L +P VK +RAR LY AG +T IA S +V++L
Sbjct: 952 LFERILHKMDRCGTFELEPLMELPAVKINRARQLYAAGFQTIGDIARVRPSHLVQSL--- 1008
Query: 1274 SSWIAEAQRRVQLGVAKKIKNGARKIVLEKAE 1305
+ L VA +I + A+ I+++K +
Sbjct: 1009 --------EHMPLRVATEIVSAAKIILMKKLD 1032
Score = 81 (33.6 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 24/94 (25%), Positives = 48/94 (51%)
Query: 1022 YSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINV-----EVEP 1076
+ T +GRAAF + + + + + +L +A++ +L + LHL+YL N E+ P
Sbjct: 783 FKLTNIGRAAFKAGIDYKRANAIHKELKQAQQQLILTNYLHLLYLVVCFNSNERGDELFP 842
Query: 1077 -DWELYYERFLELSALDQSVGNQVGVSEPYLMRM 1109
D + + + L Q++ Q+G +E + R+
Sbjct: 843 ADASILFGVYTSLPLDSQAMFKQLGFTEAHAARL 876
Score = 45 (20.9 bits), Expect = 2.4e-68, Sum P(4) = 2.4e-68
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 1073 EVEPDWEL---YYERFLELSALD-QSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKG- 1127
E+EP EL R +L A Q++G+ V +L++ P+R+++++ + K
Sbjct: 967 ELEPLMELPAVKINRARQLYAAGFQTIGDIARVRPSHLVQSLEHMPLRVATEIVSAAKII 1026
Query: 1128 LHGKLEYRLGITSN 1141
L KL++ T N
Sbjct: 1027 LMKKLDHLEEETEN 1040
Score = 43 (20.2 bits), Expect = 1.5e-15, Sum P(5) = 1.5e-15
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 1548 LPKDLWSDHRRKDRFLIYGSSDK--NVLTP 1575
+PK + +HRR ++ + + DK +L+P
Sbjct: 532 VPKHKFFEHRRSEKLDLMDALDKMCGILSP 561
Score = 39 (18.8 bits), Expect = 2.3e-76, Sum P(4) = 2.3e-76
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 179 EDNKIAKKKYCVSNLLQSGEQTTCSNAKN 207
+D+ K + L+Q + TC KN
Sbjct: 183 DDSMSFISKSVIEGLVQGTQYVTCEELKN 211
Score = 37 (18.1 bits), Expect = 1.1e-66, Sum P(5) = 1.1e-66
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 1662 LWPDDERSSNPNLEKEVKKRLSSEAAAAAN 1691
L P +S N+E+ + L S++ AAA+
Sbjct: 905 LLPIPSVASKYNVERGTLQHLISQSTAAAS 934
Score = 37 (18.1 bits), Expect = 1.1e-66, Sum P(5) = 1.1e-66
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 1744 NVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTL 1782
+++ +E + V E A+ +L KKL +LE++ L
Sbjct: 1003 HLVQSLEHMPLRVATEIVSAAKIILMKKLDHLEEETENL 1041
>UNIPROTKB|J9P160 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 CTD:113510 EMBL:AAEX03016730 RefSeq:XP_544959.2
Ensembl:ENSCAFT00000044378 GeneID:487837 KEGG:cfa:487837
Uniprot:J9P160
Length = 1072
Score = 779 (279.3 bits), Expect = 4.6e-74, Sum P(2) = 4.6e-74
Identities = 203/597 (34%), Positives = 323/597 (54%)
Query: 701 QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYS--KKMDVVRTILTAA 758
QI+GMSAT+ NV + +LQA Y + FRPV L+EY+K+ +AIY K + T
Sbjct: 464 QIIGMSATLTNVEDLQKFLQAEYYTSQFRPVELKEYLKINDAIYEVDSKAENGMTFSRLL 523
Query: 759 N------LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812
N L DPDH+V L EV+ HS L+FC ++K CE+ A + +FL K +
Sbjct: 524 NCQYSDTLKKMDPDHLVALATEVIPN-HSCLVFCPTKKNCENVAEMICRFLSKQYLKHRE 582
Query: 813 SDSEFIDITSAIDALRRCPAG-LDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
+ + I L+ +G L P+L+ T+P GVAYHH+GLT +ER+++E Y G++
Sbjct: 583 KEKHEV-----IKNLKNISSGNLCPILKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLC 637
Query: 872 VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931
+ T TSTLAAGVNLPARRVI R P + ++F+ +Y+QM GRAGR GID+ GES+LI +
Sbjct: 638 LFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAGRAGIDSIGESILILQE 697
Query: 932 EEVKKIMGLLNESCPPLHSCLS----EDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
++ ++++ L++ PL +C S E G+ L ++ I +DI+ ++ T
Sbjct: 698 KDKQQVLELISR---PLENCYSHLVQEFTKGIQTLFLSLIGLKIATNLDDIYHFMCGTFF 754
Query: 988 NSTKPFQDVVKSAQD----SLRWLCHRKFLEWNEDTK-----LYS--TTPLGRAAFGSSL 1036
+ KS D SLR+L + L+ + K YS T LGRA+F ++
Sbjct: 755 GVQQKILLQEKSLWDITIESLRYLTEKGLLQKDTIDKPKEEIQYSFHITKLGRASFKGTI 814
Query: 1037 CPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVE--VEPDWELYYERFLELSALDQS 1094
I+ DL + EG VL S LHL+YL+TP ++ +PDW +Y+ +F +LS +Q+
Sbjct: 815 DLAYCNILYRDLKKGLEGLVLESLLHLIYLTTPYDMASCCDPDWMIYFRQFSQLSPAEQN 874
Query: 1095 VGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCK 1154
V +GVSE ++ + A G P++ K++ D +
Sbjct: 875 VAALLGVSENFIGKKASGQPIK-------------KKVD-----------KD-----IVN 905
Query: 1155 RFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYDLEG 1213
R Y++ +L L++ET + V E F + RG +Q+L A F+S V FCE L ++
Sbjct: 906 RLYLSFVLYTLLKETNIWSVSEKFNMPRGYIQSLLTGAASFSSCVLHFCEELEEFWVYRA 965
Query: 1214 LIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
L+ + ++++ V+AE++ L + V RA+ LY AG ++ +A A+ +++ +
Sbjct: 966 LLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYKSLTHLANANPEVLIRTI 1022
Score = 544 (196.6 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 197/693 (28%), Positives = 318/693 (45%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LP+++ +Y + +GI KLY WQ CL ++ V +R+NL+Y TS GK+ VAEILML+ L+
Sbjct: 291 LPTKVRDLYVQFKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELL 350
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK---DTSVAVCTI 624
+ L++LPYV+I EK L LG V Y G++G K S+ + TI
Sbjct: 351 CRRRDVLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGKFPPIKRRGKKSLYIATI 410
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXX 684
EK NSLVN ++E GR+S +G++V+DELHM+ + +RG Y +
Sbjct: 411 EKGNSLVNSLIETGRISSLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSA 470
Query: 685 XXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQA--ALYETNFRPVPLEEYIKVGNA 742
D LQ ++ V + ++L+ A+YE + + + ++ N
Sbjct: 471 TLTNVE----DLQKFLQAEYYTSQFRPVE-LKEYLKINDAIYEVDSKAENGMTFSRLLNC 525
Query: 743 IYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF 802
YS D ++ + DPDH+V L EV+ HS L+FC ++K CE+ A + +F
Sbjct: 526 QYS---DTLKKM---------DPDHLVALATEVIPN-HSCLVFCPTKKNCENVAEMICRF 572
Query: 803 LKKFSINVHSSDS-EFIDITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEER 858
L K + + E I I + CP L + + SG+ L E
Sbjct: 573 LSKQYLKHREKEKHEVIKNLKNISSGNLCPI-LKRTIPFGVAYHHSGLTSDERKLLEEAY 631
Query: 859 EVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTG 918
C + + A V L A V + + R+ R AGRAG
Sbjct: 632 STGVLCLFTCTSTLAAGVNLPARRVILRAPYVA--KEFLKRNQYKQMIGR--AGRAGIDS 687
Query: 919 IDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDI 978
I + ++V +++ E+C H + E G+ L ++ I +DI
Sbjct: 688 IGESILILQEKDKQQVLELISRPLENCYS-H-LVQEFTKGIQTLFLSLIGLKIATNLDDI 745
Query: 979 HRYVRCTLLNSTKPFQDVVKSAQD----SLRWLCHRKFLEWNEDTK-----LYS--TTPL 1027
+ ++ T + KS D SLR+L + L+ + K YS T L
Sbjct: 746 YHFMCGTFFGVQQKILLQEKSLWDITIESLRYLTEKGLLQKDTIDKPKEEIQYSFHITKL 805
Query: 1028 GRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVE--VEPDWELYYERF 1085
GRA+F ++ I+ DL + EG VL S LHL+YL+TP ++ +PDW +Y+ +F
Sbjct: 806 GRASFKGTIDLAYCNILYRDLKKGLEGLVLESLLHLIYLTTPYDMASCCDPDWMIYFRQF 865
Query: 1086 LELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKL-RDSTKGLH-GKLEYRLGITSNNM 1143
+LS +Q+V +GVSE ++ + A G P I K+ +D L+ + Y L + N+
Sbjct: 866 SQLSPAEQNVAALLGVSENFIGKKASGQP--IKKKVDKDIVNRLYLSFVLYTL-LKETNI 922
Query: 1144 LSDAQTLRVCKRFYVALILSRLVQETPVLEVCE 1176
S ++ + + + +L+ + VL CE
Sbjct: 923 WSVSEKFNMPRGYIQSLLTGAASFSSCVLHFCE 955
Score = 168 (64.2 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 45/155 (29%), Positives = 83/155 (53%)
Query: 1152 VCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYD 1210
+ R Y++ +L L++ET + V E F + RG +Q+L A F+S V FCE L ++
Sbjct: 903 IVNRLYLSFVLYTLLKETNIWSVSEKFNMPRGYIQSLLTGAASFSSCVLHFCEELEEFWV 962
Query: 1211 LEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
L+ + ++++ V+AE++ L + V RA+ LY AG ++ +A A+ +++ +
Sbjct: 963 YRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYKSLTHLANANPEVLIRTI 1022
Query: 1271 FESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAE 1305
S R Q AK++ + A+ ++ EKAE
Sbjct: 1023 DHLS--------RHQ---AKQMVSSAKMLLHEKAE 1046
Score = 38 (18.4 bits), Expect = 4.6e-74, Sum P(2) = 4.6e-74
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 212 QSGFIVKTGNLVPNSSQRVTDSNASLLLQASLRKCDKSSKST 253
++G I G +V + + + + +L+ +L K +SK+T
Sbjct: 422 ETGRISSLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTT 463
>UNIPROTKB|E2RST3 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 OMA:SRPLENC EMBL:AAEX03016730
Ensembl:ENSCAFT00000014486 Uniprot:E2RST3
Length = 1106
Score = 779 (279.3 bits), Expect = 4.4e-73, Sum P(2) = 4.4e-73
Identities = 203/597 (34%), Positives = 323/597 (54%)
Query: 701 QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYS--KKMDVVRTILTAA 758
QI+GMSAT+ NV + +LQA Y + FRPV L+EY+K+ +AIY K + T
Sbjct: 498 QIIGMSATLTNVEDLQKFLQAEYYTSQFRPVELKEYLKINDAIYEVDSKAENGMTFSRLL 557
Query: 759 N------LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812
N L DPDH+V L EV+ HS L+FC ++K CE+ A + +FL K +
Sbjct: 558 NCQYSDTLKKMDPDHLVALATEVIPN-HSCLVFCPTKKNCENVAEMICRFLSKQYLKHRE 616
Query: 813 SDSEFIDITSAIDALRRCPAG-LDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
+ + I L+ +G L P+L+ T+P GVAYHH+GLT +ER+++E Y G++
Sbjct: 617 KEKHEV-----IKNLKNISSGNLCPILKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLC 671
Query: 872 VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931
+ T TSTLAAGVNLPARRVI R P + ++F+ +Y+QM GRAGR GID+ GES+LI +
Sbjct: 672 LFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAGRAGIDSIGESILILQE 731
Query: 932 EEVKKIMGLLNESCPPLHSCLS----EDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
++ ++++ L++ PL +C S E G+ L ++ I +DI+ ++ T
Sbjct: 732 KDKQQVLELISR---PLENCYSHLVQEFTKGIQTLFLSLIGLKIATNLDDIYHFMCGTFF 788
Query: 988 NSTKPFQDVVKSAQD----SLRWLCHRKFLEWNEDTK-----LYS--TTPLGRAAFGSSL 1036
+ KS D SLR+L + L+ + K YS T LGRA+F ++
Sbjct: 789 GVQQKILLQEKSLWDITIESLRYLTEKGLLQKDTIDKPKEEIQYSFHITKLGRASFKGTI 848
Query: 1037 CPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVE--VEPDWELYYERFLELSALDQS 1094
I+ DL + EG VL S LHL+YL+TP ++ +PDW +Y+ +F +LS +Q+
Sbjct: 849 DLAYCNILYRDLKKGLEGLVLESLLHLIYLTTPYDMASCCDPDWMIYFRQFSQLSPAEQN 908
Query: 1095 VGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCK 1154
V +GVSE ++ + A G P++ K++ D +
Sbjct: 909 VAALLGVSENFIGKKASGQPIK-------------KKVD-----------KD-----IVN 939
Query: 1155 RFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYDLEG 1213
R Y++ +L L++ET + V E F + RG +Q+L A F+S V FCE L ++
Sbjct: 940 RLYLSFVLYTLLKETNIWSVSEKFNMPRGYIQSLLTGAASFSSCVLHFCEELEEFWVYRA 999
Query: 1214 LIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
L+ + ++++ V+AE++ L + V RA+ LY AG ++ +A A+ +++ +
Sbjct: 1000 LLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYKSLTHLANANPEVLIRTI 1056
Score = 544 (196.6 bits), Expect = 4.6e-60, Sum P(2) = 4.6e-60
Identities = 197/693 (28%), Positives = 318/693 (45%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LP+++ +Y + +GI KLY WQ CL ++ V +R+NL+Y TS GK+ VAEILML+ L+
Sbjct: 325 LPTKVRDLYVQFKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELL 384
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK---DTSVAVCTI 624
+ L++LPYV+I EK L LG V Y G++G K S+ + TI
Sbjct: 385 CRRRDVLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGKFPPIKRRGKKSLYIATI 444
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXX 684
EK NSLVN ++E GR+S +G++V+DELHM+ + +RG Y +
Sbjct: 445 EKGNSLVNSLIETGRISSLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSA 504
Query: 685 XXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQA--ALYETNFRPVPLEEYIKVGNA 742
D LQ ++ V + ++L+ A+YE + + + ++ N
Sbjct: 505 TLTNVE----DLQKFLQAEYYTSQFRPVE-LKEYLKINDAIYEVDSKAENGMTFSRLLNC 559
Query: 743 IYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF 802
YS D ++ + DPDH+V L EV+ HS L+FC ++K CE+ A + +F
Sbjct: 560 QYS---DTLKKM---------DPDHLVALATEVIPN-HSCLVFCPTKKNCENVAEMICRF 606
Query: 803 LKKFSINVHSSDS-EFIDITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEER 858
L K + + E I I + CP L + + SG+ L E
Sbjct: 607 LSKQYLKHREKEKHEVIKNLKNISSGNLCPI-LKRTIPFGVAYHHSGLTSDERKLLEEAY 665
Query: 859 EVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTG 918
C + + A V L A V + + R+ R AGRAG
Sbjct: 666 STGVLCLFTCTSTLAAGVNLPARRVILRAPYVA--KEFLKRNQYKQMIGR--AGRAGIDS 721
Query: 919 IDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDI 978
I + ++V +++ E+C H + E G+ L ++ I +DI
Sbjct: 722 IGESILILQEKDKQQVLELISRPLENCYS-H-LVQEFTKGIQTLFLSLIGLKIATNLDDI 779
Query: 979 HRYVRCTLLNSTKPFQDVVKSAQD----SLRWLCHRKFLEWNEDTK-----LYS--TTPL 1027
+ ++ T + KS D SLR+L + L+ + K YS T L
Sbjct: 780 YHFMCGTFFGVQQKILLQEKSLWDITIESLRYLTEKGLLQKDTIDKPKEEIQYSFHITKL 839
Query: 1028 GRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVE--VEPDWELYYERF 1085
GRA+F ++ I+ DL + EG VL S LHL+YL+TP ++ +PDW +Y+ +F
Sbjct: 840 GRASFKGTIDLAYCNILYRDLKKGLEGLVLESLLHLIYLTTPYDMASCCDPDWMIYFRQF 899
Query: 1086 LELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKL-RDSTKGLH-GKLEYRLGITSNNM 1143
+LS +Q+V +GVSE ++ + A G P I K+ +D L+ + Y L + N+
Sbjct: 900 SQLSPAEQNVAALLGVSENFIGKKASGQP--IKKKVDKDIVNRLYLSFVLYTL-LKETNI 956
Query: 1144 LSDAQTLRVCKRFYVALILSRLVQETPVLEVCE 1176
S ++ + + + +L+ + VL CE
Sbjct: 957 WSVSEKFNMPRGYIQSLLTGAASFSSCVLHFCE 989
Score = 168 (64.2 bits), Expect = 4.6e-60, Sum P(2) = 4.6e-60
Identities = 45/155 (29%), Positives = 83/155 (53%)
Query: 1152 VCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYD 1210
+ R Y++ +L L++ET + V E F + RG +Q+L A F+S V FCE L ++
Sbjct: 937 IVNRLYLSFVLYTLLKETNIWSVSEKFNMPRGYIQSLLTGAASFSSCVLHFCEELEEFWV 996
Query: 1211 LEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
L+ + ++++ V+AE++ L + V RA+ LY AG ++ +A A+ +++ +
Sbjct: 997 YRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYKSLTHLANANPEVLIRTI 1056
Query: 1271 FESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAE 1305
S R Q AK++ + A+ ++ EKAE
Sbjct: 1057 DHLS--------RHQ---AKQMVSSAKMLLHEKAE 1080
Score = 38 (18.4 bits), Expect = 4.4e-73, Sum P(2) = 4.4e-73
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 212 QSGFIVKTGNLVPNSSQRVTDSNASLLLQASLRKCDKSSKST 253
++G I G +V + + + + +L+ +L K +SK+T
Sbjct: 456 ETGRISSLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTT 497
>UNIPROTKB|Q8TDG4 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AF436845 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GO:GO:0008026 EMBL:AK128665
EMBL:AC096768 EMBL:BC015428 EMBL:BC095473 EMBL:AL512702
IPI:IPI00152527 IPI:IPI00647582 IPI:IPI00807650 IPI:IPI00889496
RefSeq:NP_598375.2 UniGene:Hs.480101 ProteinModelPortal:Q8TDG4
SMR:Q8TDG4 IntAct:Q8TDG4 STRING:Q8TDG4 PhosphoSite:Q8TDG4
DMDM:296434521 PaxDb:Q8TDG4 PRIDE:Q8TDG4 DNASU:113510
Ensembl:ENST00000295488 GeneID:113510 KEGG:hsa:113510
UCSC:uc003hom.3 UCSC:uc003hoo.1 UCSC:uc003hop.1 CTD:113510
GeneCards:GC04M084328 HGNC:HGNC:18536 HPA:HPA036853 MIM:606769
neXtProt:NX_Q8TDG4 PharmGKB:PA164720529 InParanoid:Q8TDG4
OMA:SRPLENC OrthoDB:EOG4THVSJ PhylomeDB:Q8TDG4 GenomeRNAi:113510
NextBio:78853 ArrayExpress:Q8TDG4 Bgee:Q8TDG4 Genevestigator:Q8TDG4
Uniprot:Q8TDG4
Length = 1101
Score = 769 (275.8 bits), Expect = 8.4e-73, Sum P(3) = 8.4e-73
Identities = 206/597 (34%), Positives = 322/597 (53%)
Query: 701 QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYS--KKMDVVRTILTAA 758
QI+GMSAT+ NV + +LQA Y + FRPV L+EY+K+ + IY K + T
Sbjct: 492 QIIGMSATLNNVEDLQKFLQAEYYTSQFRPVELKEYLKINDTIYEVDSKAENGMTFSRLL 551
Query: 759 N------LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812
N L DPDH+V L EV+ +S L+FC S+K CE+ A + KFL K + H
Sbjct: 552 NYKYSDTLKKMDPDHLVALVTEVIPN-YSCLVFCPSKKNCENVAEMICKFLSKEYLK-HK 609
Query: 813 SDSEFIDITSAIDALRRCPAG-LDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
+ E ++ I L+ G L PVL+ T+P GVAYHH+GLT +ER+++E Y G++
Sbjct: 610 -EKEKCEV---IKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLC 665
Query: 872 VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931
+ T TSTLAAGVNLPARRVI R P + ++F+ +Y+QM GRAGR GIDT GES+LI +
Sbjct: 666 LFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQE 725
Query: 932 EEVKKIMGLLNESCPPLHSCLS----EDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
++ ++++ L+ + PL +C S E G+ L ++ I +DI+ ++ T
Sbjct: 726 KDKQQVLELITK---PLENCYSHLVQEFTKGIQTLFLSLIGLKIATNLDDIYHFMNGTFF 782
Query: 988 NSTKPFQDVVKS----AQDSLRWLCHRKFLEWN-----EDTKLYS--TTPLGRAAFGSSL 1036
+ KS +SLR+L + L+ + E+ Y+ T LGRA+F ++
Sbjct: 783 GVQQKVLLKEKSLWEITVESLRYLTEKGLLQKDTIYKSEEEVQYNFHITKLGRASFKGTI 842
Query: 1037 CPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINV--EVEPDWELYYERFLELSALDQS 1094
I+ DL + EG VL S LHL+YL+TP ++ + PDW +Y+ +F +LS +Q+
Sbjct: 843 DLAYCDILYRDLKKGLEGLVLESLLHLIYLTTPYDLVSQCNPDWMIYFRQFSQLSPAEQN 902
Query: 1095 VGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCK 1154
V +GVSE ++ + A G + GK + N V
Sbjct: 903 VAAILGVSESFIGKKASGQAI--------------GKK-----VDKN----------VVN 933
Query: 1155 RFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYDLEG 1213
R Y++ +L L++ET + V E F + RG +Q L F+S V FCE L ++
Sbjct: 934 RLYLSFVLYTLLKETNIWTVSEKFNMPRGYIQNLLTGTASFSSCVLHFCEELEEFWVYRA 993
Query: 1214 LIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
L+ + ++++ V+AE++ L + V RA+ LY AG ++ + +A A+ +V+ +
Sbjct: 994 LLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTI 1050
Score = 381 (139.2 bits), Expect = 1.0e-41, Sum P(3) = 1.0e-41
Identities = 101/303 (33%), Positives = 155/303 (51%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LPS++ +Y + +GI KLY WQ CL ++ V +R+NL+Y TS GK+ VAEILML+ L+
Sbjct: 319 LPSKVRDLYAQFKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELL 378
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK---DTSVAVCTI 624
K L++LPYV+I EK L LG V Y G++G K S+ + TI
Sbjct: 379 CCRKDVLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATI 438
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXX 684
EK +SLVN ++E GR+ +G++V+DELHM+ + +RG Y +
Sbjct: 439 EKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILYTSKTTQIIGMSA 498
Query: 685 XXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQA--ALYETNFRPVPLEEYIKVGNA 742
D LQ ++ V + ++L+ +YE + + + ++ N
Sbjct: 499 TLNNVE----DLQKFLQAEYYTSQFRPVE-LKEYLKINDTIYEVDSKAENGMTFSRLLNY 553
Query: 743 IYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF 802
YS D ++ + DPDH+V L EV+ +S L+FC S+K CE+ A + KF
Sbjct: 554 KYS---DTLKKM---------DPDHLVALVTEVIPN-YSCLVFCPSKKNCENVAEMICKF 600
Query: 803 LKK 805
L K
Sbjct: 601 LSK 603
Score = 169 (64.5 bits), Expect = 1.0e-41, Sum P(3) = 1.0e-41
Identities = 47/155 (30%), Positives = 82/155 (52%)
Query: 1152 VCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYD 1210
V R Y++ +L L++ET + V E F + RG +Q L F+S V FCE L ++
Sbjct: 931 VVNRLYLSFVLYTLLKETNIWTVSEKFNMPRGYIQNLLTGTASFSSCVLHFCEELEEFWV 990
Query: 1211 LEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
L+ + ++++ V+AE++ L + V RA+ LY AG ++ + +A A+ +V+ +
Sbjct: 991 YRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTI 1050
Query: 1271 FESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAE 1305
S RR AK+I + A+ ++ EKAE
Sbjct: 1051 DHLS-------RRQ----AKQIVSSAKMLLHEKAE 1074
Score = 48 (22.0 bits), Expect = 8.4e-73, Sum P(3) = 8.4e-73
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 444 DVQEKDSVLIVHERK-LDISSQGIDSITSDSPTNVIKKPVGN-EKSDEAGTPSSSGMLKD 501
++Q + L H K D S +++ + P N I++P N E S + T S K
Sbjct: 205 NLQNSSNDLGDHSMKERDWKSSSHNTVNEELPHNCIEQPQQNDESSSKVRTSSDMNRRKS 264
Query: 502 CLD 504
D
Sbjct: 265 IKD 267
Score = 45 (20.9 bits), Expect = 1.0e-41, Sum P(3) = 1.0e-41
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 32 EKDAKITVEVSPSAKGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNL-SLEIDKYSK 87
E +K+ + + ++ ++LKN+ ++ + SR + +K L S EI+ K
Sbjct: 248 ESSSKVRTSSDMNRRKSIKDHLKNAMTGNAKAQTPIFSRSKQLKDTLLSEEINVAKK 304
Score = 45 (20.9 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 21/67 (31%), Positives = 29/67 (43%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYL--EKKAYTLAGMKF---SLYTAADIA--N 1797
+L + LW I V+ L + LLQK Y E+ Y K S D+A +
Sbjct: 789 LLKEKSLWEITVESLRYLTEKGLLQKDTIYKSEEEVQYNFHITKLGRASFKGTIDLAYCD 848
Query: 1798 VLYGHLK 1804
+LY LK
Sbjct: 849 ILYRDLK 855
Score = 42 (19.8 bits), Expect = 8.4e-73, Sum P(3) = 8.4e-73
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 163 KLKDHKRHSSPSLLGGEDNKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGF 215
+L +HK+H++ ++ K K ++ + G T K+ E QSG+
Sbjct: 132 QLPEHKKHATDFATENLCSESIKNKLSITTI---GNLTELQTDKHTEN-QSGY 180
>UNIPROTKB|F1RVE2 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:CU467102 EMBL:CU468150 Ensembl:ENSSSCT00000010115
Uniprot:F1RVE2
Length = 1103
Score = 760 (272.6 bits), Expect = 2.8e-71, Sum P(2) = 2.8e-71
Identities = 205/597 (34%), Positives = 317/597 (53%)
Query: 701 QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYS--KKMDVVRTILTAA 758
QIVGMSAT+ NV + +L+A Y + FRPV L+EY+K+ + IY K + T
Sbjct: 494 QIVGMSATLNNVEDLQAFLRAEYYSSWFRPVELKEYLKINDTIYEVDSKAENGMTFSRLL 553
Query: 759 N------LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812
N L DPDH+V L EV+ HS L+FC ++K CE+ A + K L K +
Sbjct: 554 NYKYSDTLKKLDPDHLVALVTEVIPN-HSCLVFCPTKKNCENVAEMICKILSKEYLKHRE 612
Query: 813 SDS-EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
+ E + AI CP VL+ T+P GVAYHH+GLT +ER+++E + G++
Sbjct: 613 KEKHELLKNLKAISGGSVCP-----VLKHTIPFGVAYHHSGLTNDERKLLEEAHSAGVLC 667
Query: 872 VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931
+LT TSTLAAGVNLPA+RVI R P + ++F+ +Y+QM GRAGR GID+ GES+LI +
Sbjct: 668 LLTCTSTLAAGVNLPAQRVILRAPYVAKEFLKRNQYKQMIGRAGRAGIDSVGESILIFQE 727
Query: 932 EEVKKIMGLLNESCPPLHSCLS----EDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
++ ++++ L++ PL +C S E G+ L ++ I T DI+ ++ T
Sbjct: 728 KDKQQVLELISR---PLENCYSRLVQEFTKGIQTLFLSLIGLKIATTLGDIYHFMSGTFF 784
Query: 988 NSTKPFQDVVKS----AQDSLRWLCHRKFLE-----WNEDTKLYS--TTPLGRAAFGSSL 1036
+ KS +SLR+L + L+ +E+ YS T LGRA+F ++
Sbjct: 785 GVQQKILLKEKSLWEITVESLRYLTEKGLLQKDTVLGSEEEFQYSFRITKLGRASFKGTI 844
Query: 1037 CPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINV--EVEPDWELYYERFLELSALDQS 1094
I+ DL + EG VL S LHL+YL+TP ++ +PDW +Y+ +F +LS +Q+
Sbjct: 845 DLAYCDILYRDLKKGLEGLVLESLLHLIYLTTPYDMASRCDPDWMVYFRQFSQLSPAEQN 904
Query: 1095 VGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCK 1154
V VGVSE ++ + A G I K+ D T +
Sbjct: 905 VATLVGVSENFIGKKASG--QAIKKKV-DKT--------------------------IVN 935
Query: 1155 RFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYDLEG 1213
R Y++ +L L++ET V V E F + RG +Q L A F+S V FCE L ++
Sbjct: 936 RLYLSFVLYTLLKETSVWRVSEKFNMPRGHIQNLLSGAAAFSSCVLHFCEELEEFWVYRA 995
Query: 1214 LIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
L+ + ++++ V+AE++ L + V RA+ LY AG ++ +A A +++ +
Sbjct: 996 LLVELTKKLTYCVKAELIPLMEVAGVLEGRAKQLYNAGYKSLAHLANADPEVLIRTI 1052
Score = 386 (140.9 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
Identities = 121/405 (29%), Positives = 195/405 (48%)
Query: 434 DNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEAGTP 493
D++S+ SD + S+ + + +++ S+ S T +K+ + +E+ + A
Sbjct: 250 DSSSKVRTSSDGNRRQSLKDHLKSAMAGNARAHTSVFSR--TKQLKETLLSEEINVAKKT 307
Query: 494 SSSGMLKDCLDLSSWLPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSA 552
+S D L LPS++ +Y + RGI KLY WQ CL + V +R+NL+Y TS
Sbjct: 308 IASS--SDDLGPFYSLPSKVRDLYAQFRGIEKLYEWQHTCLTLKSVQERKNLIYSLPTSG 365
Query: 553 GKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS 612
GK+ VAEILML+ L+ K AL++LPYV+I EK L LG V Y G++G
Sbjct: 366 GKTLVAEILMLQELLCRRKDALMILPYVAIVQEKIAGLSSFGIELGFFVEEYAGSKGKFP 425
Query: 613 LPK---DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXX 669
K S+ + TIEK +SLVN ++E GR+ +G++V+DELHM+ + +RG
Sbjct: 426 PIKRREKKSLYIATIEKGHSLVNSLIETGRIGGLGLVVVDELHMIGEGSRGATLEMTLAK 485
Query: 670 XRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQA--ALYETN 727
Y + +A L+ S+ V + ++L+ +YE +
Sbjct: 486 ILYTSKTTQIVGMSATLNNVEDLQAF----LRAEYYSSWFRPVE-LKEYLKINDTIYEVD 540
Query: 728 FRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCS 787
+ + ++ N YS D ++ + DPDH+V L EV+ HS L+FC
Sbjct: 541 SKAENGMTFSRLLNYKYS---DTLKKL---------DPDHLVALVTEVIPN-HSCLVFCP 587
Query: 788 SRKGCESTARHVSKFLKKFSINVHSSDS-EFIDITSAIDALRRCP 831
++K CE+ A + K L K + + E + AI CP
Sbjct: 588 TKKNCENVAEMICKILSKEYLKHREKEKHELLKNLKAISGGSVCP 632
Score = 170 (64.9 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
Identities = 47/155 (30%), Positives = 81/155 (52%)
Query: 1152 VCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLG-WYD 1210
+ R Y++ +L L++ET V V E F + RG +Q L A F+S V FCE L ++
Sbjct: 933 IVNRLYLSFVLYTLLKETSVWRVSEKFNMPRGHIQNLLSGAAAFSSCVLHFCEELEEFWV 992
Query: 1211 LEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
L+ + ++++ V+AE++ L + V RA+ LY AG ++ +A A +++ +
Sbjct: 993 YRALLVELTKKLTYCVKAELIPLMEVAGVLEGRAKQLYNAGYKSLAHLANADPEVLIRTI 1052
Query: 1271 FESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAE 1305
S RR AK+I + A+ ++ EKAE
Sbjct: 1053 DHLS-------RRQ----AKQIVSSAKMLLHEKAE 1076
Score = 43 (20.2 bits), Expect = 2.8e-71, Sum P(2) = 2.8e-71
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 32 EKDAKITVEVSPSAKGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLEIDKYSKDEKN 91
+ +K+ + + +L ++LK++ + S+ SR + +K L E +K K
Sbjct: 250 DSSSKVRTSSDGNRRQSLKDHLKSAMAGNARAHTSVFSRTKQLKETLLSEEINVAK--KT 307
Query: 92 QALLSDQAQP 101
A SD P
Sbjct: 308 IASSSDDLGP 317
Score = 42 (19.8 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKK--LRYLEKKAYTLAGMKF---SLYTAADIA--N 1797
+L + LW I V+ L + LLQK L E+ Y+ K S D+A +
Sbjct: 791 LLKEKSLWEITVESLRYLTEKGLLQKDTVLGSEEEFQYSFRITKLGRASFKGTIDLAYCD 850
Query: 1798 VLYGHLK 1804
+LY LK
Sbjct: 851 ILYRDLK 857
Score = 38 (18.4 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 1751 LWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEG 1810
L G+ + G + ++KK+ +K + F LYT +V K +P G
Sbjct: 908 LVGVSENFIGKKASGQAIKKKV---DKTIVNRLYLSFVLYTLLKETSVWRVSEKFNMPRG 964
Query: 1811 H 1811
H
Sbjct: 965 H 965
>UNIPROTKB|E9PT19 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1560216
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 IPI:IPI00958253 Ensembl:ENSRNOT00000002974
ArrayExpress:E9PT19 Uniprot:E9PT19
Length = 879
Score = 671 (241.3 bits), Expect = 2.1e-64, P = 2.1e-64
Identities = 166/439 (37%), Positives = 254/439 (57%)
Query: 701 QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIY---SKKMDVVRTILTA 757
QI+GMSAT+ NV + +L+A Y + FRPV L+E++KV + IY S+ +D + T
Sbjct: 447 QIIGMSATLNNVEDLQAFLKAEYYTSQFRPVELKEFLKVNDTIYEVDSRAVDGM-TFSRL 505
Query: 758 AN------LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVH 811
N L DPD +V L EV+ +S L+FC S+K CE+ A + KFL + +N H
Sbjct: 506 LNYKYSDALKKVDPDRLVALVTEVIPN-YSCLVFCPSKKNCENVAEMLCKFLSRDYLN-H 563
Query: 812 SSDSEFIDITSAIDALRRCPAG-LDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLV 870
+ + I +LR G + PVL+ T+P GVAYHH+GLT +ER+++E Y G++
Sbjct: 564 REEEK----GELIKSLRNVGHGKVCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVL 619
Query: 871 RVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
+ T TSTLAAGVNLPARRVI R P + F+ +Y+QM GRAGR GIDT GES+L+ +
Sbjct: 620 CLFTCTSTLAAGVNLPARRVILRAPYVANTFLKRNQYKQMIGRAGRAGIDTAGESILLLQ 679
Query: 931 PEEVKKIMGLLNESCPPLHSCLSED-KNGMTHAILEVVAGGIVQTAEDIHRYVRCTL--- 986
++ ++++GL+N HS L E+ G+ L ++ I ++ DI++++ TL
Sbjct: 680 EKDKQQVLGLINGPLEDCHSHLVEEFTKGIQSLFLSLIGLKIAESLGDIYQFMNGTLFGV 739
Query: 987 ----LNSTKPFQDVVKSAQDSL--RWLCHRKFLEWNEDTKL-YSTTPLGRAAFGSSLCPE 1039
L K +V A + L + L + E+++ + T LG+A+F ++
Sbjct: 740 QQKTLLREKSLWEVTVGALEHLTEKGLLQKDSHGSPEESRCHFRITKLGQASFKGAIDLT 799
Query: 1040 ESLIVLDDLSRAREGFVLASDLHLVYLSTPINV--EVEPDWELYYERFLELSALDQSVGN 1097
+ DL + EG VL S LHLVYL+TP ++ + EPDW +Y+ +F +LS +QSV
Sbjct: 800 YCDTLYRDLKKGLEGLVLESLLHLVYLTTPYDLAAQSEPDWMVYFRQFSQLSPAEQSVAT 859
Query: 1098 QVGVSEPYLMRMAHGAPMR 1116
+G+SE ++ R A G +R
Sbjct: 860 LLGISESFIGRKASGQAIR 878
Score = 380 (138.8 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 105/330 (31%), Positives = 164/330 (49%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LPS++ +Y + +GI +LY WQ CL + V +R+NL+Y TS GK+ VAEILML+ L+
Sbjct: 274 LPSKVRDLYAQLKGIKRLYDWQHTCLTLSSVQERKNLIYSLPTSGGKTLVAEILMLQELL 333
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK---DTSVAVCTI 624
K LL+LPYV+I EK L LG V Y G++G K S+ + TI
Sbjct: 334 CRQKDVLLILPYVAIVQEKISSLSSFGIELGFFVEEYAGSKGRFPPIKRREKKSLYIATI 393
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXX 684
EK +SLVN ++E GR+ +G++V+DELHM+ + +RG Y +
Sbjct: 394 EKGHSLVNALIETGRMGTLGLVVVDELHMIGEGSRGATLEMTLAKVLYTSKTTQIIGMSA 453
Query: 685 XXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQA--ALYETNFRPVPLEEYIKVGNA 742
+A L+ ++ V + ++L+ +YE + R V + ++ N
Sbjct: 454 TLNNVEDLQAF----LKAEYYTSQFRPVE-LKEFLKVNDTIYEVDSRAVDGMTFSRLLNY 508
Query: 743 IYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF 802
YS D ++ + DPD +V L EV+ +S L+FC S+K CE+ A + KF
Sbjct: 509 KYS---DALKKV---------DPDRLVALVTEVIPN-YSCLVFCPSKKNCENVAEMLCKF 555
Query: 803 LKKFSINVHSSDS-EFIDITSAIDALRRCP 831
L + +N + E I + + CP
Sbjct: 556 LSRDYLNHREEEKGELIKSLRNVGHGKVCP 585
Score = 44 (20.5 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 1869 TLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHC 1917
TL G +Q T S+ E + +EH+ E + +D +G + E C
Sbjct: 735 TLFG--VQQKTLLREKSLWEVTVGALEHLTEKGLLQKDSHG-SPEESRC 780
>ZFIN|ZDB-GENE-100917-1 [details] [associations]
symbol:poln "polymerase (DNA directed) nu"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR001098
InterPro:IPR002298 Pfam:PF00476 PRINTS:PR00868 SMART:SM00482
ZFIN:ZDB-GENE-100917-1 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
GeneTree:ENSGT00640000091560 EMBL:CR376795 IPI:IPI00499550
Ensembl:ENSDART00000108753 Bgee:F1RDP8 Uniprot:F1RDP8
Length = 1146
Score = 643 (231.4 bits), Expect = 2.3e-58, Sum P(5) = 2.3e-58
Identities = 161/445 (36%), Positives = 243/445 (54%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGH 1802
+ VLA ME + + VD E + +L KL+ LE++A+ AG KF + ++A + +L+
Sbjct: 712 IPVLAAMESYKMHVDKEALKKTSEMLGSKLKQLEQEAHQAAGQKFLVSSSAQLRLILFEK 771
Query: 1803 LKL-PIPEGHNKGK---QHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSL 1858
L+L + E K Q ST + L L+ HP+ +I E+R + K+ + I S
Sbjct: 772 LRLHELCENKKLPKTVKQQQSTSETALLQLQKLHPLPKIILEYRQIHKIKTTFVDGILSC 831
Query: 1859 ARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCK 1918
T+K + W QTST +GRLS + PN Q + + ++S + G A D
Sbjct: 832 ------TRKTFISSTWNQTSTVSGRLSAKHPNFQALPKL-PLQISKKQYIHGKAS-DIVT 883
Query: 1919 INARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGR 1978
++ R FIP +E W L+AD+ Q+ELRL+AH S DP L+ + P D FTM+AA+W G
Sbjct: 884 VHPRAMFIP-REGWTFLSADFCQVELRLLAHLSADPQLLRIFQSPEADAFTMLAAQWKGV 942
Query: 1979 SEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHV 2038
SED V ++R+Q KR++Y ++YG G LS L S+ EA SF ++ V +++
Sbjct: 943 SEDRVSLEDREQAKRIVYSVVYGAGRERLSGILGVSAEEASRFQDSFLKTYREVPAFIQH 1002
Query: 2039 AVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIH 2098
+ C G+V S+ GR+RFL I + +++A+RQAVN + QGSAAD+ K+AMI I
Sbjct: 1003 TIQHCQSHGFVRSIMGRRRFLPHIHSADWSLRNQAERQAVNFVLQGSAADLAKLAMIRIC 1062
Query: 2099 SIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESA-- 2156
S + DS A RL+ Q+HDEL+ EV+ S + + +LV+K MES
Sbjct: 1063 SQV-----SSDSQTA----------RLVAQIHDELLFEVEISQLDQFAALVKKTMESLQH 1107
Query: 2157 -----ALLLVPLLVKIQVGSTWGSL 2176
L VPL V + G +WGS+
Sbjct: 1108 IEYLNVNLSVPLKVLLSTGRSWGSM 1132
Score = 63 (27.2 bits), Expect = 2.3e-58, Sum P(5) = 2.3e-58
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 413 VSEKGSVTHKSCQKIK-FKCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITS 471
V + S K C+ I F+C D +R++ + D ++ V ER+ DI+ S S
Sbjct: 273 VPMENSPDAKRCESISVFECQQDTANRSDKMMD-SSREKVDNGTERR-DITKLRTSSPQS 330
Query: 472 DSPTNVIKKPVGNEKSDEAGTPSSSGM 498
D N + PV + + A + S + M
Sbjct: 331 DD--NTVVMPVLEGEMECAASSSRNAM 355
Score = 47 (21.6 bits), Expect = 2.3e-58, Sum P(5) = 2.3e-58
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 1359 PVPMEHSDKPSLEANQISKKVDLESAGEKLLETSDNELSALVEGGSI-TELQQKFD 1413
P PM + L +I K + KL +TSD+ LS E I +E +K D
Sbjct: 419 PQPMVKRQRRLLRPQKIFKSKRGKKQN-KLTKTSDSSLSGSKESSHILSETDRKED 473
Score = 39 (18.8 bits), Expect = 2.3e-58, Sum P(5) = 2.3e-58
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 1761 CLQARNLLQKKLRYLEKKAYT 1781
C +A++LL+ LR+ ++T
Sbjct: 602 CFKAKDLLRTVLRHFRDLSWT 622
Score = 39 (18.8 bits), Expect = 2.3e-58, Sum P(5) = 2.3e-58
Identities = 24/117 (20%), Positives = 48/117 (41%)
Query: 79 SLEIDKYSKDEKNQALLSDQAQPQATQKVIS--RCSSKEGNSEVGCHMKDGSAHIPESLE 136
+L + K ++++A SDQ A Q+ GNS ++ + + H S E
Sbjct: 24 ALRVQYVQKADRSRATWSDQGFGMAQQQDGDDRNVELHSGNSR-DLNLNELAEH-SNSSE 81
Query: 137 LKQFPTDFLSLYCXXXXXXXXXXXXXKLKDHKRHSSPSLLGGEDNKIAKKKYCVSNL 193
L+ D +L + +H +PS+ G ED+ + +C++++
Sbjct: 82 LEDMAIDRFALNLPIIERFVFDHADNIITPIGQHFTPSVQG-EDSL---QTFCLTSM 134
Score = 38 (18.4 bits), Expect = 2.2e-55, Sum P(4) = 2.2e-55
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 1690 ANRSGRWKNQMRRAAHNGCCRR 1711
ANRS + + R NG RR
Sbjct: 297 ANRSDKMMDSSREKVDNGTERR 318
>UNIPROTKB|F1PCT5 [details] [associations]
symbol:POLN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR002298 Pfam:PF00476 PRINTS:PR00868 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
GeneTree:ENSGT00640000091560 EMBL:AAEX03002458
Ensembl:ENSCAFT00000023669 Uniprot:F1PCT5
Length = 546
Score = 589 (212.4 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 154/446 (34%), Positives = 246/446 (55%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGH 1802
+ +LA ME I V+ E + LL +L+ LE++A+ +AG +F + + + +L+G
Sbjct: 65 IPILAVMESHSIRVNREEMERTSALLGSRLKELEQEAHFVAGEQFLITSNNQLQEILFGK 124
Query: 1803 LKL----PIPEGHNKGKQH-PSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTL-GSIC 1856
LKL P+ G Q PST + L+ L+ HP+ +I E+R + K + + G +
Sbjct: 125 LKLHLMSPMETLPRTGLQRLPSTSEAVLNALQDLHPLPKIILEYRRVHKTKSAFVDGLLA 184
Query: 1857 SLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCV-EHMVEFKMSNEDIYGGNAEVD 1915
L + S+S+ W QT T TGRLS PN+Q + +H + K++ + G E
Sbjct: 185 FLIKGSISSM-------WNQTGTVTGRLSARHPNIQGISKHPI--KITKPQNFKGT-EGT 234
Query: 1916 HCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKP-HGDVFTMIAAR 1974
I+ R F+ + E+ LAAD+SQIELR++AH S DP L+ L + DVF+ + ++
Sbjct: 235 MLTISPRSMFV-APESHTFLAADFSQIELRILAHLSGDPELLKLFRESGRDDVFSTLTSQ 293
Query: 1975 WTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVAS 2034
W + V +R+QTK+++Y ++YG G L+ L + EA + ++SF + +
Sbjct: 294 WKDIPPECVTYADREQTKKVVYSVVYGAGKERLAACLGVTVQEAAQFLESFLQKYKKIKD 353
Query: 2035 WLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAM 2094
++ ++ CHQ GYV S+ GR+R L ++ + + +++A+RQAVN + QGSAAD+ K+AM
Sbjct: 354 FVQTTIAQCHQTGYVASIMGRRRPLPRVHDQDQQLRAQAERQAVNFVVQGSAADLCKMAM 413
Query: 2095 INIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCME 2154
I I + P +L A RL+ Q+HDEL+ EV+ S I E +LV+ ME
Sbjct: 414 IRIFRAVATS---P--TLTA---------RLVAQIHDELLFEVEDSQIPEFAALVRGTME 459
Query: 2155 SAALLLVPLLVKIQVGSTWGSLEPFQ 2180
S L VPL V + G +WG L P Q
Sbjct: 460 S--LQYVPLKVSLSAGPSWGHLVPLQ 483
Score = 39 (18.8 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 212 QSGFIVKTGNLVPNSSQRVTDSNASLLLQASLR 244
+S VK + NSS+ V + N + L+ R
Sbjct: 7 ESSISVKVNSTYGNSSRNVVNQNVRVNLKILYR 39
>UNIPROTKB|F1NCR5 [details] [associations]
symbol:POLN "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR001098
InterPro:IPR002298 Pfam:PF00476 PRINTS:PR00868 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
GeneTree:ENSGT00640000091560 EMBL:AADN02014956 EMBL:AADN02014957
EMBL:AADN02014958 IPI:IPI00580534 Ensembl:ENSGALT00000025307
Uniprot:F1NCR5
Length = 660
Score = 593 (213.8 bits), Expect = 4.1e-56, P = 4.1e-56
Identities = 159/452 (35%), Positives = 250/452 (55%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGH 1802
+ VLA ME I VD + + +L +L+ LE++A+ +AG +F L +++ + VL+
Sbjct: 233 IKVLAVMETHKIHVDKQELKKTSEILGLRLKELEEEAHQIAGERFLLTSSSQLREVLFEK 292
Query: 1803 LKL-----PIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICS 1857
LKL IP + +Q ST + L L+ HP+ ++ E+R + K+ + + +
Sbjct: 293 LKLHTLCEKIPR--TERQQVASTSEVVLSKLQDLHPLPKLMLEYRQVRKMKSTYVDGL-- 348
Query: 1858 LARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCV-EHMVEFKMSNEDIYGGNAEVDH 1916
R M +K + W QT T TGRLS + PN+Q + +H V + I G E+
Sbjct: 349 --RTCM--RKGFICPTWNQTGTVTGRLSSKHPNIQGISKHPVRIT-KKQYIKGKEEEI-- 401
Query: 1917 CKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHG-DVFTMIAARW 1975
I+ R F+ S++ + LAAD+SQIELR++A S +P L+ L +P D+FT +A++W
Sbjct: 402 LTISPRALFV-SKKGYTFLAADFSQIELRILADLSAEPELLKLFQEPETTDIFTSLASQW 460
Query: 1976 TGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASW 2035
G + V +R+Q KR++Y ++YG G L+E L + +EA I+SF + V +
Sbjct: 461 KGIPSEQVKQTDREQAKRIVYSVVYGAGKERLAECLGITPHEAGHFIESFMQKYKKVHEF 520
Query: 2036 LHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMI 2095
+ C KGYV S+ GRKR L+ I + K +++A+RQAVN + QGSAAD+ K+AM+
Sbjct: 521 TKKTIGQCQNKGYVVSIMGRKRLLANINSQDYKLRTQAERQAVNFVVQGSAADLCKMAMV 580
Query: 2096 NIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMES 2155
I + +V P +L A RL+ Q+HDEL+ EV+ S I+E +LV++ MES
Sbjct: 581 EIFTSVV---VSP--TLTA---------RLIAQIHDELLFEVEDSQIQEFSALVKRTMES 626
Query: 2156 ----AAL---LLVPLLVKIQVGSTWGSLEPFQ 2180
AL L VPL V + G +WG + Q
Sbjct: 627 LQQTTALEVPLKVPLKVLLTTGKSWGCMTELQ 658
>UNIPROTKB|J9NTZ1 [details] [associations]
symbol:J9NTZ1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR019760 Pfam:PF00476 PROSITE:PS00447 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GeneTree:ENSGT00640000091272
GO:GO:0003887 OMA:KERAMCD EMBL:AAEX03017021
Ensembl:ENSCAFT00000044293 Uniprot:J9NTZ1
Length = 535
Score = 387 (141.3 bits), Expect = 3.5e-55, Sum P(4) = 3.5e-55
Identities = 79/179 (44%), Positives = 115/179 (64%)
Query: 1919 INARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGR 1978
++ R F+P ++LAADYSQ+ELR++AH S D LI +L+ DVF IAA W
Sbjct: 257 VSMRHAFVPFSGG-LILAADYSQLELRILAHLSHDRRLIQVLNTG-ADVFRSIAAEWKMI 314
Query: 1979 SEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHV 2038
+SVG R Q K++ YGI+YGMG +L EQ+ N+A I+SFKS + G+ ++
Sbjct: 315 EPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIESFKSRYTGINHFMRE 374
Query: 2039 AVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINI 2097
V +C + G+V+++ GR+R+L I N K+ A+RQA+N+ QGSAADI+KIA +NI
Sbjct: 375 TVKNCKRNGFVQTILGRRRYLPGINDNNPYHKAHAERQAINTTVQGSAADIVKIATVNI 433
Score = 128 (50.1 bits), Expect = 3.5e-55, Sum P(4) = 3.5e-55
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 1746 LADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKL 1805
LA +EL GIG C ++++Q KL +E +AY LAG FS ++ DIA VL+ LKL
Sbjct: 28 LALLELNGIGFSTTECESQKHIMQAKLDAIEIQAYQLAGHSFSFTSSDDIAEVLFLELKL 87
Query: 1806 PIPEGHNKGKQHPST 1820
P P G K + T
Sbjct: 88 P-PNGEIKNQASKKT 101
Score = 104 (41.7 bits), Expect = 3.5e-55, Sum P(4) = 3.5e-55
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 2125 LLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177
L+LQ+HDEL EV + + +V+ ME A L V L V++++G++WG L+
Sbjct: 479 LILQLHDELFYEVAQEDVVQVAHIVKNEMERAIELSVKLKVRVKIGASWGDLK 531
Score = 88 (36.0 bits), Expect = 3.5e-55, Sum P(4) = 3.5e-55
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 1814 GKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGH 1873
GKQ ST K L+ L+ HP+ +I E R + + + + R++ ++
Sbjct: 118 GKQF-STSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPV 176
Query: 1874 WLQTSTATGRLSMEEPNLQCVEHMVEFKM 1902
Q+ TATGR++ EPN+Q V E KM
Sbjct: 177 -SQSHTATGRITFMEPNIQNVPRDFEIKM 204
Score = 45 (20.9 bits), Expect = 8.8e-41, Sum P(3) = 8.8e-41
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 346 GDSKVQHIKAGGSLKQMGKDVIDSVKELSPLP 377
G+ + ++ G KDV++ +K L PLP
Sbjct: 108 GNDSRRKLRLGKQFST-SKDVLNKLKALHPLP 138
Score = 41 (19.5 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 1836 PVIKEHRTLAKLLNCTL-GS---ICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNL 1891
P K H + +N T+ GS I +A +++ Q TLH + G L E L
Sbjct: 403 PYHKAHAE-RQAINTTVQGSAADIVKIATVNIQKQLETLHSTFKSHGHREGMLQSERTGL 461
Score = 39 (18.8 bits), Expect = 3.7e-40, Sum P(3) = 3.7e-40
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 226 SSQRVTDSNASLLLQASLRKCDKSSKSTLNTTACYTPEPSIVKTYVRET 274
S++R DS L L K +SK LN P P ++ + R T
Sbjct: 104 STRRGNDSRRKL----RLGKQFSTSKDVLNKLKALHPLPGLILEWRRIT 148
>UNIPROTKB|E1BDC2 [details] [associations]
symbol:POLN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001098 InterPro:IPR002298
Pfam:PF00476 PRINTS:PR00868 SMART:SM00482 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 OMA:CKCPVIC
GeneTree:ENSGT00640000091560 EMBL:DAAA02018506 EMBL:DAAA02018507
EMBL:DAAA02018508 IPI:IPI00689047 Ensembl:ENSBTAT00000023023
Uniprot:E1BDC2
Length = 893
Score = 609 (219.4 bits), Expect = 7.4e-55, Sum P(2) = 7.4e-55
Identities = 175/555 (31%), Positives = 284/555 (51%)
Query: 1652 GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRR 1711
G+D I +W++ P D + P+ E V K L + N N R+ + +
Sbjct: 341 GLDPRIAAWLIDPSD---AAPSFEDLVAKYLGNPTTLTVN--SMHGNSSRKTVNQTVRAK 395
Query: 1712 VAQTRALCSVLWKLLVSXXXXXXXXXXXXXXVNVLADMELWGIGVDMEGCLQARNLLQKK 1771
+ L L L + +LA ME I V+ E + LL +
Sbjct: 396 LRVLHRLTMHLCSQLQVCGLWQLFWTLELPLIPILAVMESHRIRVNKEEMERMSALLGSR 455
Query: 1772 LRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPI--PEGHNKG---KQHPSTDKHCLD 1826
L+ LE++A+ +AG +F + + + +L+G L+L + P+ + ++ PST L+
Sbjct: 456 LKELEQEAHFVAGEQFLITSNHQLREILFGKLRLHLLRPQDASPATGLRRLPSTSGAELN 515
Query: 1827 LLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSM 1886
L+ HP+ +I E+R + K+ + + + + + + K ++ W QT T +GRLS
Sbjct: 516 ALQDLHPLPRIILEYRQVHKIKSTFVDGLLACMKKLI---KGSVSSTWNQTGTVSGRLSA 572
Query: 1887 EEPNLQCV-EHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELR 1945
+ PN+Q + +H ++ ++ + G E D I+ R F+ S E + LAAD+SQIELR
Sbjct: 573 KHPNIQGISKHPIQ--ITKPQSFKG--EEDELSISPRTAFV-SSEGYTFLAADFSQIELR 627
Query: 1946 LMAHFSKDPALIGLLSKPH-GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGP 2004
++AH S DP L+ L + DVF+ + ++W S + V +R+QTK+++Y ++YG G
Sbjct: 628 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVSPERVTHADREQTKKVVYAVVYGAGK 687
Query: 2005 NTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKF 2064
L+ L EA ++SF + + + V+ C Q GYVES+ GR+R L +I+
Sbjct: 688 ERLAACLGVPVREAARFLESFLQKYKKIKDFTQATVARCQQTGYVESIMGRRRPLPRIRA 747
Query: 2065 GNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCR 2124
+ + +++A+RQA N + QGSAAD+ K+AMI I + + P +L A R
Sbjct: 748 HDPQLRAQAERQAANFVVQGSAADLCKMAMIRIFTAMATS---P--TLTA---------R 793
Query: 2125 LLLQVHDELVLEVDPSVIKEAVSLVQKCMESA----AL---LLVPLLVKIQVGSTWGSLE 2177
LL Q+HDEL+ EV+ S + E +LVQ ME+ AL L VPL V + G +WG L
Sbjct: 794 LLAQIHDELLFEVEDSQVPEFTALVQGTMEALQHVPALELQLQVPLKVSLSAGRSWGHLV 853
Query: 2178 PFQ-ADNYTNVVPDL 2191
P Q A TNV P L
Sbjct: 854 PLQGAPGPTNVPPSL 868
Score = 39 (18.8 bits), Expect = 7.4e-55, Sum P(2) = 7.4e-55
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 94 LLSDQAQPQATQKVISRCSSKEGNSEVGC--HMKDGSAHIPE 133
L +DQ+Q + SRCS + + + M+ H+P+
Sbjct: 100 LSADQSQKGISSSAPSRCSVPQCDQQASVLQKMECKRKHLPK 141
>UNIPROTKB|H0YA88 [details] [associations]
symbol:POLN "DNA polymerase nu" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] InterPro:IPR001098 InterPro:IPR002298
Pfam:PF00476 PRINTS:PR00868 SMART:SM00482 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 EMBL:AL136360 EMBL:AL158068
HGNC:HGNC:18870 ChiTaRS:POLN Ensembl:ENST00000511098 Uniprot:H0YA88
Length = 524
Score = 580 (209.2 bits), Expect = 1.0e-54, P = 1.0e-54
Identities = 147/445 (33%), Positives = 246/445 (55%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGH 1802
+ +LA ME I V+ E + LL +L+ LE++A+ +AG +F + + + +L+G
Sbjct: 66 IPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGK 125
Query: 1803 LKLPIPEGHNK----GKQ-HPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICS 1857
LKL + N G Q +PST + L+ LR HP+ +I E+R + K+ + + + +
Sbjct: 126 LKLHLLSQRNSLPRTGLQKYPSTSE-ALNALRDLHPLPKIILEYRQVHKIKSTFVDGLLA 184
Query: 1858 LARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCV-EHMVEFKMSNEDIYGGNAEVDH 1916
+ K ++ W QT T TGRLS + PN+Q + +H ++ + ++ G ++
Sbjct: 185 CMK------KGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIQIT-TPKNFKGKEDKI-- 235
Query: 1917 CKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPH-GDVFTMIAARW 1975
I+ R F+ S+ + LAAD+SQIELR++ H S DP L+ L + DVF+ + ++W
Sbjct: 236 LTISPRAMFVSSKGH-TFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQW 294
Query: 1976 TGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASW 2035
+ V +R+QTK+++Y ++YG G L+ L EA + ++SF + + +
Sbjct: 295 KDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDF 354
Query: 2036 LHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMI 2095
A++ CHQ G V S+ GR+R L +I + + +++A+RQAVN + QGSAAD+ K+AMI
Sbjct: 355 ARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMI 414
Query: 2096 NIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMES 2155
++ + + +L A RL+ Q+HDEL+ EV+ I E +LV++ MES
Sbjct: 415 HVFTAVAAS-----HTLTA---------RLVAQIHDELLFEVEDPQIPECAALVRRTMES 460
Query: 2156 AALLLVPLLVKIQVGSTWGSLEPFQ 2180
L VPL V + G +WG L P Q
Sbjct: 461 --LEQVPLKVSLSAGRSWGHLVPLQ 483
>UNIPROTKB|Q7Z5Q5 [details] [associations]
symbol:POLN "DNA polymerase nu" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001098
InterPro:IPR002298 Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00482 EMBL:AY136549 GO:GO:0005634 EMBL:CH471131
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003887
eggNOG:COG0749 EMBL:AK131239 EMBL:DQ060036 EMBL:AL136360
EMBL:AL158068 IPI:IPI00385298 RefSeq:NP_861524.2 UniGene:Hs.368454
ProteinModelPortal:Q7Z5Q5 SMR:Q7Z5Q5 STRING:Q7Z5Q5
PhosphoSite:Q7Z5Q5 DMDM:90101282 PaxDb:Q7Z5Q5 PRIDE:Q7Z5Q5
DNASU:353497 Ensembl:ENST00000382865 Ensembl:ENST00000511885
GeneID:353497 KEGG:hsa:353497 UCSC:uc003ger.2 CTD:353497
GeneCards:GC04M002040 H-InvDB:HIX0004033 HGNC:HGNC:18870 MIM:610887
neXtProt:NX_Q7Z5Q5 PharmGKB:PA134979866 HOGENOM:HOG000230904
HOVERGEN:HBG079981 InParanoid:Q7Z5Q5 KO:K16618 OMA:CKCPVIC
OrthoDB:EOG4VQ9NK ChiTaRS:POLN GenomeRNAi:353497 NextBio:99808
ArrayExpress:Q7Z5Q5 Bgee:Q7Z5Q5 CleanEx:HS_POLN
Genevestigator:Q7Z5Q5 GermOnline:ENSG00000130997 Uniprot:Q7Z5Q5
Length = 900
Score = 604 (217.7 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 167/549 (30%), Positives = 278/549 (50%)
Query: 1648 HLKD--GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAH 1705
H+ D G+D I +W++ P D + P+ E V+K N + + N R +
Sbjct: 340 HVADFIGLDPRIAAWLIDPSD---ATPSFEDLVEKYCEKSITVKVNST--YGNSSRNIVN 394
Query: 1706 NGCCRRVAQTRALCSVLWKLLVSXXXXXXXXXXXXXXVNVLADMELWGIGVDMEGCLQAR 1765
+ L L L + +LA ME I V+ E +
Sbjct: 395 QNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTS 454
Query: 1766 NLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNK----GKQ-HPST 1820
LL +L+ LE++A+ +AG +F + + + +L+G LKL + N G Q +PST
Sbjct: 455 ALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPST 514
Query: 1821 DKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTA 1880
+ L+ LR HP+ +I E+R + K+ + + + + + K ++ W QT T
Sbjct: 515 SEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMK------KGSISSTWNQTGTV 568
Query: 1881 TGRLSMEEPNLQCV-EHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADY 1939
TGRLS + PN+Q + +H ++ + ++ G ++ I+ R F+ S+ + LAAD+
Sbjct: 569 TGRLSAKHPNIQGISKHPIQIT-TPKNFKGKEDKI--LTISPRAMFVSSKGH-TFLAADF 624
Query: 1940 SQIELRLMAHFSKDPALIGLLSKPH-GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGI 1998
SQIELR++ H S DP L+ L + DVF+ + ++W + V +R+QTK+++Y +
Sbjct: 625 SQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAV 684
Query: 1999 LYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRF 2058
+YG G L+ L EA + ++SF + + + A++ CHQ G V S+ GR+R
Sbjct: 685 VYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRP 744
Query: 2059 LSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQM 2118
L +I + + +++A+RQAVN + QGSAAD+ K+AMI++ + + +L A
Sbjct: 745 LPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAAS-----HTLTA---- 795
Query: 2119 LKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESA----AL---LLVPLLVKIQVGS 2171
RL+ Q+HDEL+ EV+ I E +LV++ MES AL L VPL V + G
Sbjct: 796 -----RLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGR 850
Query: 2172 TWGSLEPFQ 2180
+WG L P Q
Sbjct: 851 SWGHLVPLQ 859
Score = 44 (20.5 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 64 KQSLLS-RHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSEVGC 122
K+ L S R + + + L +S +Q L +DQ Q + +S C + N E
Sbjct: 70 KKDLKSLRSQTSRGSAKLSPQSFSVRLTDQ-LSADQKQKSISSLTLSSCLIPQYNQEASV 128
Query: 123 HMKDG 127
K G
Sbjct: 129 LQKKG 133
>UNIPROTKB|J9JHF4 [details] [associations]
symbol:POLN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR002298 Pfam:PF00476 PRINTS:PR00868 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 OMA:CKCPVIC
GeneTree:ENSGT00640000091560 EMBL:AAEX03002458
Ensembl:ENSCAFT00000046101 Uniprot:J9JHF4
Length = 899
Score = 595 (214.5 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
Identities = 185/590 (31%), Positives = 293/590 (49%)
Query: 1606 KVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPD 1665
KV Q LK + F + V T L + G+ VH G+D I +W++ P
Sbjct: 304 KVLFQTLKCPVIC---FNAKDFVRTVLQI--FGNEGSWKHVVHFV-GLDPRIAAWLIDPG 357
Query: 1666 DERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKL 1725
+ +S +L V K L S + N + + N R + + L L
Sbjct: 358 EAATSFEDL---VAKFLESSISVKVNST--YGNSSRNVVNQNVRVNLKILYRLTMGLCSQ 412
Query: 1726 LVSXXXXXXXXXXXXXXVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGM 1785
L + +LA ME I V+ E + LL +L+ LE++A+ +AG
Sbjct: 413 LKVYGLWQLFCTLELPLIPILAVMESHSIRVNREEMERTSALLGSRLKELEQEAHFVAGE 472
Query: 1786 KFSLYTAADIANVLYGHLKL----PIPEGHNKGKQH-PSTDKHCLDLLRHEHPIVPVIKE 1840
+F + + + +L+G LKL P+ G Q PST + L+ L+ HP+ +I E
Sbjct: 473 QFLITSNNQLQEILFGKLKLHLMSPMETLPRTGLQRLPSTSEAVLNALQDLHPLPKIILE 532
Query: 1841 HRTLAKLLNCTL-GSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCV-EHMV 1898
+R + K + + G + L + S+S+ W QT T TGRLS PN+Q + +H +
Sbjct: 533 YRRVHKTKSAFVDGLLAFLIKGSISSM-------WNQTGTVTGRLSARHPNIQGISKHPI 585
Query: 1899 EFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIG 1958
K++ + G E I+ R F+ + E+ LAAD+SQIELR++AH S DP L+
Sbjct: 586 --KITKPQNFKGT-EGTMLTISPRSMFV-APESHTFLAADFSQIELRILAHLSGDPELLK 641
Query: 1959 LLSKP-HGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNE 2017
L + DVF+ + ++W + V +R+QTK+++Y ++YG G L+ L + E
Sbjct: 642 LFRESGRDDVFSTLTSQWKDIPPECVTYADREQTKKVVYSVVYGAGKERLAACLGVTVQE 701
Query: 2018 AKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQA 2077
A + ++SF + + ++ ++ CHQ GYV S+ GR+R L ++ + + +++A+RQA
Sbjct: 702 AAQFLESFLQKYKKIKDFVQTTIAQCHQTGYVASIMGRRRPLPRVHDQDQQLRAQAERQA 761
Query: 2078 VNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEV 2137
VN + QGSAAD+ K+AMI I + P +L A RL+ Q+HDEL+ EV
Sbjct: 762 VNFVVQGSAADLCKMAMIRIFRAVATS---P--TLTA---------RLVAQIHDELLFEV 807
Query: 2138 DPSVIKEAVSLVQKCMESA----AL---LLVPLLVKIQVGSTWGSLEPFQ 2180
+ S I E +LV+ MES AL L VPL V + G +WG L P Q
Sbjct: 808 EDSQIPEFAALVRGTMESLQYVRALGLQLQVPLKVSLSAGPSWGHLVPLQ 857
Score = 45 (20.9 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
Identities = 22/114 (19%), Positives = 47/114 (41%)
Query: 418 SVTHKSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDSPTNV 477
S H S ++ K ++ +E +++ K SVL+ + + + + S TS +
Sbjct: 26 SAMH-SGDLVESKNWRESEKTSEVVNNSCIKYSVLLEDGKNQSLEKRNLKSFTSQTSRTS 84
Query: 478 IK---KPVGNEKSDEAGTPSSSGMLKDCLDLSSWLP--SEICSIYKKRGISKLY 526
IK +P +D+ T + S ++P ++ S+ +K + Y
Sbjct: 85 IKLRLQPSSIRHTDQLSTYQKQKNISSLAPPSCFVPQCNQEASVLQKMECKRKY 138
>MGI|MGI:2675617 [details] [associations]
symbol:Poln "DNA polymerase N" species:10090 "Mus musculus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=ISO]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR001098 InterPro:IPR002298 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00482 MGI:MGI:2675617
GO:GO:0005634 GO:GO:0003677 GO:GO:0006281 GO:GO:0006261
GO:GO:0003887 eggNOG:COG0749 CTD:353497 HOGENOM:HOG000230904
HOVERGEN:HBG079981 KO:K16618 OrthoDB:EOG4VQ9NK EMBL:AY135562
EMBL:AK133063 IPI:IPI00380433 IPI:IPI00742408 RefSeq:NP_862905.1
UniGene:Mm.319286 ProteinModelPortal:Q7TQ07 SMR:Q7TQ07
STRING:Q7TQ07 PhosphoSite:Q7TQ07 PRIDE:Q7TQ07
Ensembl:ENSMUST00000042954 GeneID:272158 KEGG:mmu:272158
UCSC:uc008xbt.1 UCSC:uc008xbu.1 GeneTree:ENSGT00640000091560
InParanoid:Q7TQ07 NextBio:393551 Bgee:Q7TQ07 CleanEx:MM_POLN
Genevestigator:Q7TQ07 GermOnline:ENSMUSG00000045102 Uniprot:Q7TQ07
Length = 864
Score = 585 (211.0 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 171/549 (31%), Positives = 277/549 (50%)
Query: 1648 HLKD--GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAH 1705
H+ D G+D + +W++ P D + P+ E V K L E + S ++ R
Sbjct: 339 HVADFVGLDPRVAAWLIDPSD---TAPSFEDLVAKHL--EKSITVKPSSTFREASRNTLS 393
Query: 1706 NGCCRRVAQTRALCSVLWKLLVSXXXXXXXXXXXXXXVNVLADMELWGIGVDMEGCLQAR 1765
+ L L L + + +LA ME I VD E +
Sbjct: 394 QNVFMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTS 453
Query: 1766 NLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPI--PEGH--NKGKQHP-ST 1820
LL +L+ LE++A+ +AG +F + + + +L+G LKL + H G Q+ ST
Sbjct: 454 ALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLST 513
Query: 1821 DKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTA 1880
+ L+ L+ HP+ +I E+R + K+ + + + LA + +K ++ W QT T
Sbjct: 514 SEAMLNSLQDLHPLPKLILEYRQVHKIKSTFIDGL--LAYM----KKGSISSTWNQTGTV 567
Query: 1881 TGRLSMEEPNLQCV-EHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADY 1939
TGRLS + PN+Q + +H + K+S + G E + I+ R F+ S E LAAD+
Sbjct: 568 TGRLSAKHPNIQGISKHPI--KISKPWNFKGKEE-ETVTISPRTLFV-SSEGHTFLAADF 623
Query: 1940 SQIELRLMAHFSKDPALIGLLSKPH-GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGI 1998
SQIELR++AH S DP L+ L + DVF+ + ++W + V +R+QTK+++Y +
Sbjct: 624 SQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSV 683
Query: 1999 LYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRF 2058
+YG G L+ L + EA ++ F + + + + CH GYV S+ GR+R
Sbjct: 684 VYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVTSILGRRRP 743
Query: 2059 LSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQM 2118
L +I + + +++A+RQAVN + QGSAAD+ K+AMI I + + P +L A
Sbjct: 744 LPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATS---P--TLTA---- 794
Query: 2119 LKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAAL-------LLVPLLVKIQVGS 2171
RL+ Q+HDEL+ EV+ + + E +LV++ MES L VPL V + VG
Sbjct: 795 -----RLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGR 849
Query: 2172 TWGSLEPFQ 2180
+WG L P Q
Sbjct: 850 SWGHLTPLQ 858
Score = 44 (20.5 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 435 NTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDSPTNVIK 479
NTS+ S V SVL HE + ++ +S+ + +P I+
Sbjct: 44 NTSKVAKKSSVHY--SVLAEHEETQSLGTKNPESLITQTPRGSIE 86
Score = 39 (18.8 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 1336 NSTGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSL 1370
+S E E+ T+ + K SS + V EH + SL
Sbjct: 35 DSRNEGESTNTS-KVAKKSSVHYSVLAEHEETQSL 68
Score = 39 (18.8 bits), Expect = 1.5e-51, Sum P(3) = 1.5e-51
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 181 NKIAKKKYCVSNLLQSGEQTTCSNAKNIE 209
+K+AKK ++L E+T KN E
Sbjct: 46 SKVAKKSSVHYSVLAEHEETQSLGTKNPE 74
Score = 37 (18.1 bits), Expect = 1.5e-51, Sum P(3) = 1.5e-51
Identities = 17/80 (21%), Positives = 28/80 (35%)
Query: 1337 STGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQISKKVDLESAGEKLLETSDNEL 1396
S G + + + + S + P P L A Q+ + L+ D E
Sbjct: 67 SLGTKNPESLITQTPRGSIELCPQPSITKLTCQLSAGQVQNSISSLGLSSYLIPQCDQEA 126
Query: 1397 SALVEGGSITELQQKFDAEN 1416
S L ++ +Q F EN
Sbjct: 127 SVLP---NMEHKRQHFLKEN 143
>UNIPROTKB|F1S8R8 [details] [associations]
symbol:POLN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001098 InterPro:IPR002298
Pfam:PF00476 PRINTS:PR00868 SMART:SM00482 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 OMA:CKCPVIC
GeneTree:ENSGT00640000091560 EMBL:FP089546
Ensembl:ENSSSCT00000009501 Uniprot:F1S8R8
Length = 872
Score = 589 (212.4 bits), Expect = 3.0e-52, Sum P(3) = 3.0e-52
Identities = 175/545 (32%), Positives = 275/545 (50%)
Query: 1652 GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSS-EAAAAANRSGRWKNQMRRAAHNGCCR 1710
G+D I +W++ P D + P+ E V K L S A ++ +G R
Sbjct: 350 GLDPRIAAWLIDPSD---AAPSFEDLVAKYLGSLTAVPESSTNGSSATNTVHQNVRADLR 406
Query: 1711 RVAQ-TRALCSVLWKLLVSXXXXXXXXXXXXXXVNVLADMELWGIGVDMEGCLQARNLLQ 1769
+++ T LCS L K + + +L + + L
Sbjct: 407 TLSRLTMGLCSQLKK---TEGLRILFTYLPFPLIPLLKQNNNNKKPCEKTDMRRTGVCLG 463
Query: 1770 KKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPI--PEGH--NKGKQHP-STDKHC 1824
+L+ LE++A+ +AG +F + + + + +L+G LKL + P G Q P ST
Sbjct: 464 FRLKELEQEAHFVAGEQFLITSNSQLREMLFGKLKLHLLHPRATLPRMGLQRPPSTSDTV 523
Query: 1825 LDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRL 1884
L L+ HP+ +I E+R + K+ + + + R M K ++ W QT T TGRL
Sbjct: 524 LSALQDLHPLPRIILEYRQVHKIKSTFVDGL----RAHMKKIKGSVSSVWNQTGTVTGRL 579
Query: 1885 SMEEPNLQCV-EHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIE 1943
S + PN+Q + +H ++ G A D ++AR F+ S E LAAD+SQIE
Sbjct: 580 SAKRPNIQGISKHPIQITAPRNA--KGEAG-DALTVSARSLFV-SPEGRSFLAADFSQIE 635
Query: 1944 LRLMAHFSKDPALIGLLSKPH-GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGM 2002
LR++AH S DP L+ L +P DVF+ + ++W G S + V +R+QTK+++Y ++YG
Sbjct: 636 LRILAHLSGDPELLKLFQEPERDDVFSALTSQWKGISPEHVTQADREQTKKVVYAVVYGA 695
Query: 2003 GPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKI 2062
G L+ L + EA +SF + + + ++ CHQ GYVES+ GR+R L +I
Sbjct: 696 GRERLAACLGVTLREAARFGESFLQKYKKIKDFTQATIARCHQTGYVESVMGRRRPLPRI 755
Query: 2063 KFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGR 2122
+ + K +++A+RQAVN + QGSAAD+ K+AMI I + + P +L A
Sbjct: 756 RARDQKLRAQAERQAVNFVVQGSAADLCKMAMIRIFAAVATS---P--TLTA-------- 802
Query: 2123 CRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESA----AL---LLVPLLVKIQVGSTWGS 2175
RL+ Q+HDEL+ EV+ S I E +LV+ ME+ AL L VPL V + G +WG
Sbjct: 803 -RLVAQIHDELLFEVEDSQIPEFAALVRGAMEALQEVPALGLQLQVPLKVSLSTGRSWGH 861
Query: 2176 LEPFQ 2180
L P Q
Sbjct: 862 LAPLQ 866
Score = 40 (19.1 bits), Expect = 3.0e-52, Sum P(3) = 3.0e-52
Identities = 22/99 (22%), Positives = 40/99 (40%)
Query: 434 DNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEAGTP 493
++ TE ++ KDSVL + + + + S +S + IK + ++ A P
Sbjct: 43 ESEKTTEVVNKSSVKDSVLREDGKNQLLEKKNLHSCSSHTARVSIKLSPQSSRNRRAEQP 102
Query: 494 SSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQVEC 532
+ +SS PS + +G L +VEC
Sbjct: 103 CPDRTQRR---ISSLAPSRGLIAQRDQGAPVLQ--EVEC 136
Score = 39 (18.8 bits), Expect = 3.0e-52, Sum P(3) = 3.0e-52
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 1108 RMAHGAPMRISSKLRDSTKG 1127
R+ G+P+ +S+LR S G
Sbjct: 161 RVTRGSPLEKASELRASGDG 180
>UNIPROTKB|F1M178 [details] [associations]
symbol:F1M178 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR001098
InterPro:IPR002298 Pfam:PF00476 PRINTS:PR00868 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
GeneTree:ENSGT00640000091560 IPI:IPI00766058
Ensembl:ENSRNOT00000058068 ArrayExpress:F1M178 Uniprot:F1M178
Length = 817
Score = 573 (206.8 bits), Expect = 4.1e-52, Sum P(2) = 4.1e-52
Identities = 168/545 (30%), Positives = 271/545 (49%)
Query: 1652 GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRR 1711
G+D + +W++ P D + P+ E V K L E + S + + C
Sbjct: 296 GLDPRVAAWLIDPSD---TAPSFEDLVAKHL--EKSIIVKPSSTFNDASINIVSQNVCVN 350
Query: 1712 VAQTRALCSVLWKLLVSXXXXXXXXXXXXXXVNVLADMELWGIGVDMEGCLQARNLLQKK 1771
+ L L L + + +LA ME I +D E + LL
Sbjct: 351 LKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKISIDKEEMERTSALLGAH 410
Query: 1772 LRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPI--PEGH--NKGKQHP-STDKHCLD 1826
L+ LE++A+ +AG +F + + + +L+G LKL + H G Q+ ST + L+
Sbjct: 411 LKKLEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLN 470
Query: 1827 LLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSM 1886
L+ HP+ +I E+R + K+ + + + LA + +K ++ W QT T TGRLS
Sbjct: 471 SLQDLHPLPKIILEYRQVHKIKSTFIDGL--LAYM----KKGSISSTWNQTGTVTGRLSA 524
Query: 1887 EEP--NLQ-CVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIE 1943
+ P N+Q H + F + + G E + I+ R F+ S E + LAAD+SQIE
Sbjct: 525 KHPPSNVQGSKSHPLSFSPPWD--FKGKEE-ETATISPRTLFV-SSEGYTFLAADFSQIE 580
Query: 1944 LRLMAHFSKDPALIGLLSKPH-GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGM 2002
LR++AH S DP L+ L + DVF+ + ++W + V +R+QTK+++Y ++YG
Sbjct: 581 LRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGA 640
Query: 2003 GPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKI 2062
G L+ L + EA ++ F + + + + CH GYV S+ GR+R L +I
Sbjct: 641 GKERLAACLGVTVLEATHFLEQFLQKYKKIKDFAQTVIGQCHSAGYVASILGRRRPLPRI 700
Query: 2063 KFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGR 2122
N + +++A+RQAVN + QGSAAD+ K+AMI I + + P +L A
Sbjct: 701 CAQNQQLRAQAERQAVNFVVQGSAADLCKLAMIRIFAAVATS---P--TLTA-------- 747
Query: 2123 CRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAAL-------LLVPLLVKIQVGSTWGS 2175
RL+ Q+HDEL+ EV+ + I E +LV++ MES L VPL V + +G +WG
Sbjct: 748 -RLVAQIHDELLFEVEDTQIPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSIGRSWGH 806
Query: 2176 LEPFQ 2180
L P Q
Sbjct: 807 LTPLQ 811
Score = 45 (20.9 bits), Expect = 4.1e-52, Sum P(2) = 4.1e-52
Identities = 19/65 (29%), Positives = 25/65 (38%)
Query: 1342 EAATTAPRNDKS-SSFIFPVP---MEHSDKPS---LEANQISKKVDLESAGEKLLETSDN 1394
E T P K+ S I P +E S +PS L A Q+ + L+ D
Sbjct: 16 EHEKTQPLETKNPKSLINQTPRGSVELSSQPSITKLSAGQVQNSISSSGLSSYLIPQCDQ 75
Query: 1395 ELSAL 1399
E S L
Sbjct: 76 EASVL 80
Score = 38 (18.4 bits), Expect = 2.2e-51, Sum P(2) = 2.2e-51
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 450 SVLIVHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLD---LS 506
SVL HE+ + ++ S+ + +P ++ S + T S+G +++ + LS
Sbjct: 12 SVLAEHEKTQPLETKNPKSLINQTPRGSVEL-----SSQPSITKLSAGQVQNSISSSGLS 66
Query: 507 SWL 509
S+L
Sbjct: 67 SYL 69
>UNIPROTKB|F1LWX6 [details] [associations]
symbol:F1LWX6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR001098
InterPro:IPR002298 Pfam:PF00476 PRINTS:PR00868 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
GeneTree:ENSGT00640000091560 IPI:IPI00389090
Ensembl:ENSRNOT00000029784 ArrayExpress:F1LWX6 Uniprot:F1LWX6
Length = 817
Score = 568 (205.0 bits), Expect = 1.9e-51, Sum P(2) = 1.9e-51
Identities = 170/547 (31%), Positives = 274/547 (50%)
Query: 1652 GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKN-QMRRAAHNGCCR 1710
G+D + +W++ P D + P+ E V K L E + S + + + + N C
Sbjct: 296 GLDPRVAAWLIDPSD---TAPSFEDLVAKHL--EKSIIVKPSSTFNDASINIVSQNVCVN 350
Query: 1711 -RVAQ--TRALCSVLWKLLVSXXXXXXXXXXXXXXVNVLADMELWGIGVDMEGCLQARNL 1767
++ T LCS L + + +LA ME I +D E + L
Sbjct: 351 LKILYDLTMDLCSKL--KAKAYGLWQLFCTLELPLIPILAVMENHKISIDKEEMERTSAL 408
Query: 1768 LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPI--PEGH--NKGKQHP-STDK 1822
L L+ LE++A+ +AG +F + + + +L+G LKL + H G Q+ ST +
Sbjct: 409 LGAHLKKLEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSE 468
Query: 1823 HCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATG 1882
L+ L+ HP+ +I E+R + K+ + + + LA + +K ++ W QT T TG
Sbjct: 469 AMLNSLQDLHPLPKIILEYRQVHKIKSTFIDGL--LAYM----KKGSISSTWNQTGTVTG 522
Query: 1883 RLSMEEPNLQCVEHMVEFKMSNEDIYGGNA-EVDHCKINARDFFIPSQENWILLAADYSQ 1941
RLS + P+ Q + K E Y E + I+ R F+ S E + LAAD+SQ
Sbjct: 523 RLSAKHPHSQ-TSNSHPLKAMKE--YNLRCKEEETATISPRTLFV-SSEGYTFLAADFSQ 578
Query: 1942 IELRLMAHFSKDPALIGLLSKPH-GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILY 2000
IELR++AH S DP L+ L + DVF+ + ++W + V +R+QTK+++Y ++Y
Sbjct: 579 IELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVY 638
Query: 2001 GMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLS 2060
G G L+ L + EA ++ F + + + + CH GYV S+ GR+R L
Sbjct: 639 GAGKERLAACLGVTVLEATHFLEQFLQKYKKIKDFAQTVIGQCHSAGYVASILGRRRPLP 698
Query: 2061 KIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLK 2120
+I N + +++A+RQAVN + QGSAAD+ K+AMI I + + P +L A
Sbjct: 699 RICAQNQQLRAQAERQAVNFVVQGSAADLCKLAMIRIFAAVATS---P--TLTA------ 747
Query: 2121 GRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAAL-------LLVPLLVKIQVGSTW 2173
RL+ Q+HDEL+ EV+ + I E +LV++ MES L VPL V + +G +W
Sbjct: 748 ---RLVAQIHDELLFEVEDTQIPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSIGRSW 804
Query: 2174 GSLEPFQ 2180
G L P Q
Sbjct: 805 GHLTPLQ 811
Score = 45 (20.9 bits), Expect = 1.9e-51, Sum P(2) = 1.9e-51
Identities = 19/65 (29%), Positives = 25/65 (38%)
Query: 1342 EAATTAPRNDKS-SSFIFPVP---MEHSDKPS---LEANQISKKVDLESAGEKLLETSDN 1394
E T P K+ S I P +E S +PS L A Q+ + L+ D
Sbjct: 16 EHEKTQPLETKNPKSLINQTPRGSVELSSQPSITKLSAGQVQNSISSSGLSSYLIPQCDQ 75
Query: 1395 ELSAL 1399
E S L
Sbjct: 76 EASVL 80
Score = 38 (18.4 bits), Expect = 1.0e-50, Sum P(2) = 1.0e-50
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 450 SVLIVHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLD---LS 506
SVL HE+ + ++ S+ + +P ++ S + T S+G +++ + LS
Sbjct: 12 SVLAEHEKTQPLETKNPKSLINQTPRGSVEL-----SSQPSITKLSAGQVQNSISSSGLS 66
Query: 507 SWL 509
S+L
Sbjct: 67 SYL 69
>UNIPROTKB|E9PSY5 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1560216 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI01007603 Ensembl:ENSRNOT00000031633 ArrayExpress:E9PSY5
Uniprot:E9PSY5
Length = 805
Score = 505 (182.8 bits), Expect = 5.3e-51, Sum P(2) = 5.3e-51
Identities = 120/293 (40%), Positives = 177/293 (60%)
Query: 701 QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIY---SKKMDVVRTILTA 757
QI+GMSAT+ NV + +L+A Y + FRPV L+E++KV + IY S+ +D + T
Sbjct: 447 QIIGMSATLNNVEDLQAFLKAEYYTSQFRPVELKEFLKVNDTIYEVDSRAVDGM-TFSRL 505
Query: 758 AN------LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVH 811
N L DPD +V L EV+ +S L+FC S+K CE+ A + KFL + +N H
Sbjct: 506 LNYKYSDALKKVDPDRLVALVTEVIPN-YSCLVFCPSKKNCENVAEMLCKFLSRDYLN-H 563
Query: 812 SSDSEFIDITSAIDALRRCPAG-LDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLV 870
+ + I +LR G + PVL+ T+P GVAYHH+GLT +ER+++E Y G++
Sbjct: 564 REEEK----GELIKSLRNVGHGKVCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVL 619
Query: 871 RVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
+ T TSTLAAGVNLPARRVI R P + F+ +Y+QM GRAGR GIDT GES+L+ +
Sbjct: 620 CLFTCTSTLAAGVNLPARRVILRAPYVANTFLKRNQYKQMIGRAGRAGIDTAGESILLLQ 679
Query: 931 PEEVKKIMGLLNESCPPLHSCLSED-KNGMTHAILEVVA---GGIVQTAEDIH 979
++ ++++GL+N HS L E+ G+ L ++ G++Q +D H
Sbjct: 680 EKDKQQVLGLINGPLEDCHSHLVEEFTKGIQSLFLSLIGLKEKGLLQ--KDSH 730
Score = 380 (138.8 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 105/330 (31%), Positives = 164/330 (49%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LPS++ +Y + +GI +LY WQ CL + V +R+NL+Y TS GK+ VAEILML+ L+
Sbjct: 274 LPSKVRDLYAQLKGIKRLYDWQHTCLTLSSVQERKNLIYSLPTSGGKTLVAEILMLQELL 333
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK---DTSVAVCTI 624
K LL+LPYV+I EK L LG V Y G++G K S+ + TI
Sbjct: 334 CRQKDVLLILPYVAIVQEKISSLSSFGIELGFFVEEYAGSKGRFPPIKRREKKSLYIATI 393
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXX 684
EK +SLVN ++E GR+ +G++V+DELHM+ + +RG Y +
Sbjct: 394 EKGHSLVNALIETGRMGTLGLVVVDELHMIGEGSRGATLEMTLAKVLYTSKTTQIIGMSA 453
Query: 685 XXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQA--ALYETNFRPVPLEEYIKVGNA 742
+A L+ ++ V + ++L+ +YE + R V + ++ N
Sbjct: 454 TLNNVEDLQAF----LKAEYYTSQFRPVE-LKEFLKVNDTIYEVDSRAVDGMTFSRLLNY 508
Query: 743 IYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF 802
YS D ++ + DPD +V L EV+ +S L+FC S+K CE+ A + KF
Sbjct: 509 KYS---DALKKV---------DPDRLVALVTEVIPN-YSCLVFCPSKKNCENVAEMLCKF 555
Query: 803 LKKFSINVHSSDS-EFIDITSAIDALRRCP 831
L + +N + E I + + CP
Sbjct: 556 LSRDYLNHREEEKGELIKSLRNVGHGKVCP 585
Score = 112 (44.5 bits), Expect = 5.3e-51, Sum P(2) = 5.3e-51
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 1022 YSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINV--EVEPDWE 1079
+ T LG+A+F ++ + DL + EG VL S LHLVYL+TP ++ + EPDW
Sbjct: 740 FRITKLGQASFKGAIDLTYCDTLYRDLKKGLEGLVLESLLHLVYLTTPYDLAAQSEPDWM 799
Query: 1080 LYYER 1084
+Y+ +
Sbjct: 800 VYFRQ 804
>UNIPROTKB|J9NXC0 [details] [associations]
symbol:POLN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR002298 Pfam:PF00476 PRINTS:PR00868 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
GeneTree:ENSGT00640000091560 EMBL:AAEX03002458
Ensembl:ENSCAFT00000048536 Uniprot:J9NXC0
Length = 865
Score = 563 (203.2 bits), Expect = 3.0e-50, Sum P(2) = 3.0e-50
Identities = 170/557 (30%), Positives = 276/557 (49%)
Query: 1606 KVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPD 1665
KV Q LK + F + V T L + G+ VH G+D I +W++ P
Sbjct: 316 KVLFQTLKCPVIC---FNAKDFVRTVLQI--FGNEGSWKHVVHFV-GLDPRIAAWLIDPG 369
Query: 1666 DERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKL 1725
+ +S +L V K L S + N + + N R + + L L
Sbjct: 370 EAATSFEDL---VAKFLESSISVKVNST--YGNSSRNVVNQNVRVNLKILYRLTMGLCSQ 424
Query: 1726 LVSXXXXXXXXXXXXXXVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGM 1785
L + +LA ME I V+ E + LL +L+ LE++A+ +AG
Sbjct: 425 LKVYGLWQLFCTLELPLIPILAVMESHSIRVNREEMERTSALLGSRLKELEQEAHFVAGE 484
Query: 1786 KFSLYTAADIANVLYGHLKL----PIPEGHNKGKQH-PSTDKHCLDLLRHEHPIVPVIKE 1840
+F + + + +L+G LKL P+ G Q PST + L+ L+ HP+ +I E
Sbjct: 485 QFLITSNNQLQEILFGKLKLHLMSPMETLPRTGLQRLPSTSEAVLNALQDLHPLPKIILE 544
Query: 1841 HRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCV-EHMVE 1899
+R + K + + + + R K ++ W QT T TGRLS PN+Q + +H +
Sbjct: 545 YRRVHKTKSAFVDGLLAFVR------KGSISSMWNQTGTVTGRLSARHPNIQGISKHPI- 597
Query: 1900 FKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGL 1959
K++ + G E I+ R F+ + E+ LAAD+SQIELR++AH S DP L+ L
Sbjct: 598 -KITKPQNFKGT-EGTMLTISPRSMFV-APESHTFLAADFSQIELRILAHLSGDPELLKL 654
Query: 1960 LSKP-HGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEA 2018
+ DVF+ + ++W + V +R+QTK+++Y ++YG G L+ L + EA
Sbjct: 655 FRESGRDDVFSTLTSQWKDIPPECVTYADREQTKKVVYSVVYGAGKERLAACLGVTVQEA 714
Query: 2019 KEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAV 2078
+ ++SF + + ++ ++ CHQ GYV S+ GR+R L ++ + + +++A+RQAV
Sbjct: 715 AQFLESFLQKYKKIKDFVQTTIAQCHQTGYVASIMGRRRPLPRVHDQDQQLRAQAERQAV 774
Query: 2079 NSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVD 2138
N + QGSAAD+ K+AMI I + P +L A RL+ Q+HDEL+ EV+
Sbjct: 775 NFVVQGSAADLCKMAMIRIFRAVATS---P--TLTA---------RLVAQIHDELLFEVE 820
Query: 2139 PSVIKEAVSLVQKCMES 2155
S I E +LV+ MES
Sbjct: 821 DSQIPEFAALVRGTMES 837
Score = 45 (20.9 bits), Expect = 3.0e-50, Sum P(2) = 3.0e-50
Identities = 22/114 (19%), Positives = 47/114 (41%)
Query: 418 SVTHKSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDSPTNV 477
S H S ++ K ++ +E +++ K SVL+ + + + + S TS +
Sbjct: 38 SAMH-SGDLVESKNWRESEKTSEVVNNSCIKYSVLLEDGKNQSLEKRNLKSFTSQTSRTS 96
Query: 478 IK---KPVGNEKSDEAGTPSSSGMLKDCLDLSSWLP--SEICSIYKKRGISKLY 526
IK +P +D+ T + S ++P ++ S+ +K + Y
Sbjct: 97 IKLRLQPSSIRHTDQLSTYQKQKNISSLAPPSCFVPQCNQEASVLQKMECKRKY 150
>DICTYBASE|DDB_G0277749 [details] [associations]
symbol:DDB_G0277749 species:44689 "Dictyostelium
discoideum" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR019760 Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00482 dictyBase:DDB_G0277749 GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000022 GO:GO:0003887 eggNOG:COG0749 RefSeq:XP_642487.1
ProteinModelPortal:Q86KS9 EnsemblProtists:DDB0169382 GeneID:8621198
KEGG:ddi:DDB_G0277751 InParanoid:Q86KS9 OMA:KERAMCD Uniprot:Q86KS9
Length = 516
Score = 423 (154.0 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 109/341 (31%), Positives = 184/341 (53%)
Query: 1854 SICSLARISMSTQKYTLHGHWLQTSTATGRLSME-EPNLQCVEHMVE-FKMSNEDIYGGN 1911
++ RISM+ H ++ A ++ + +++ + + F +N+ +
Sbjct: 181 TVVPTGRISMAFPNLQNISHPIEFRVAPSETDLQSQDSIKSFQDEIHTFDYTNDQNFKNL 240
Query: 1912 AEVD-HC---KINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHG-D 1966
E++ C K++ R+ F + ++LL+ADYSQ+ELR++ H+SKDP LI + + D
Sbjct: 241 LEIESRCSFTKVSLRNSFTCAN-GYVLLSADYSQLELRILTHYSKDPNLIEMFNYSRELD 299
Query: 1967 VFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFK 2026
VF IA + +G + V +ER+ K L+YGILYGMG N+++ +L +AK +++ FK
Sbjct: 300 VFKCIAHQLSGVDYEKVSDEERNFAKHLVYGILYGMGINSIASELKVDKEKAKVQLERFK 359
Query: 2027 SSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNN--KEKSKAQRQAVNSICQG 2084
+++ + +L Y+++L GR R S I K+ K +R A NS+ QG
Sbjct: 360 NTYRTLIDFLESIEDRVFIDAYIKTLFGRIRNFSAIHDPKTLPKDIGKIKRGARNSVPQG 419
Query: 2085 SAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKE 2144
+AADI K+AMINI S F L ++LQ+HDEL+ EV + I +
Sbjct: 420 TAADITKLAMINIQS---------------QFDQLSINVHMVLQLHDELLFEVPLTDIDQ 464
Query: 2145 AVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPFQADNYT 2185
+ ++++ ME+ L VPL +K+ +G+ WGSLE F N+T
Sbjct: 465 SAKIIKESMENVVKLNVPLPIKMSIGTNWGSLESFNF-NFT 504
Score = 124 (48.7 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLA-GMKFSLYTAADIANVLYGHL 1803
+ A ME GIG + + C R +Q K+ YLE KA L G FSL + DI+ +L+ L
Sbjct: 31 IFAMMEFVGIGFNEKICESGREKVQNKINYLEYKAKVLLPGKVFSLSSTEDISQLLFQDL 90
Query: 1804 KLPIPEGHNKGKQH 1817
K+P+PE +Q+
Sbjct: 91 KIPVPEIAKANQQY 104
Score = 96 (38.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 1815 KQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHW 1874
+Q+ ST L+ + H HP+ +I E R KL + + L + + ++ + +
Sbjct: 119 RQNYSTKGAVLEHISHHHPLPGLIIEIR---KLTHHITHYVDILGKYEYHSDRFNMRRIY 175
Query: 1875 L---QTSTATGRLSMEEPNLQCVEHMVEFKMS 1903
QT TGR+SM PNLQ + H +EF+++
Sbjct: 176 STIQQTVVPTGRISMAFPNLQNISHPIEFRVA 207
Score = 41 (19.5 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 588 EHLEVLLEPLGRHVRSYYGNQGGG 611
+ L++ + + + + Y GN+GGG
Sbjct: 88 QDLKIPVPEIAKANQQYNGNKGGG 111
>TIGR_CMR|BA_4831 [details] [associations]
symbol:BA_4831 "DNA polymerase I" species:198094 "Bacillus
anthracis str. Ames" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_847034.1 RefSeq:YP_021476.2 HSSP:P52026
ProteinModelPortal:Q81L03 SMR:Q81L03 IntAct:Q81L03
EnsemblBacteria:EBBACT00000010925 EnsemblBacteria:EBBACT00000018409
GeneID:1083984 GeneID:2815024 KEGG:ban:BA_4831 KEGG:bar:GBAA_4831
PATRIC:18787240 BioCyc:BANT261594:GJ7F-4693-MONOMER Uniprot:Q81L03
Length = 877
Score = 395 (144.1 bits), Expect = 1.2e-44, Sum P(4) = 1.2e-44
Identities = 100/252 (39%), Positives = 137/252 (54%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R F+PS+E WI+ AADYSQIELR++AH + D L+ D+ T A G +D
Sbjct: 638 RQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQHDM-DIHTKTAMDVFGVEKD 696
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
V S R Q K + +GI+YG+ LS+ L + A E I+ + SFPGV ++ V
Sbjct: 697 EVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVK 756
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
QKGYV +L R+R++ +I N +S A+R A+N+ QG+AADIIK AMI I+
Sbjct: 757 DAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMI----IM 812
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
+ + L A RLLLQVHDEL+ E +++ LV + ME A L V
Sbjct: 813 ADRL--EEEGLQA---------RLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELAV 861
Query: 2162 PLLVKIQVGSTW 2173
PL V G TW
Sbjct: 862 PLKVDYSYGPTW 873
Score = 189 (71.6 bits), Expect = 1.2e-44, Sum P(4) = 1.2e-44
Identities = 54/155 (34%), Positives = 81/155 (52%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLK 1804
VLADME+ G+ VD E L +L+ +E++ Y LAG +F++ + + +L+ +L
Sbjct: 485 VLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLN 544
Query: 1805 LPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMS 1864
LP+ + K K ST LD L H I+P I +R L KL N T I L ++ +
Sbjct: 545 LPVIK---KTKTGYSTSADVLDKLMDHHEIIPNILHYRQLGKL-NSTY--IEGLLKV-VH 597
Query: 1865 TQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVE 1899
+H + Q T TGRLS +PNLQ + +E
Sbjct: 598 EDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLE 632
Score = 40 (19.1 bits), Expect = 1.2e-44, Sum P(4) = 1.2e-44
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 81 EIDKYSKDEKNQALLSDQAQPQATQKVIS 109
E++ Y D+ L + ++ A+ KVIS
Sbjct: 104 ELENYEADDIMGTLAKEASEQGASVKVIS 132
Score = 39 (18.8 bits), Expect = 1.2e-44, Sum P(4) = 1.2e-44
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 1597 DVRKFTWNMKVQIQVLKHAAVSIQ 1620
++RK+T++ K I LK + +Q
Sbjct: 366 EMRKYTFDAKRAIVALKWNGIDMQ 389
>TIGR_CMR|CBU_1795 [details] [associations]
symbol:CBU_1795 "DNA polymerase I" species:227377
"Coxiella burnetii RSA 493" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_820774.2 ProteinModelPortal:Q83AT5 PRIDE:Q83AT5
GeneID:1209706 KEGG:cbu:CBU_1795 PATRIC:17932329
BioCyc:CBUR227377:GJ7S-1767-MONOMER Uniprot:Q83AT5
Length = 902
Score = 360 (131.8 bits), Expect = 1.0e-43, Sum P(2) = 1.0e-43
Identities = 91/252 (36%), Positives = 134/252 (53%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R F P + ++AADYSQ+ELR++AH SKDP+LI K D+ AA G + +
Sbjct: 665 RAFIAPP--GFQMVAADYSQVELRIIAHISKDPSLIKAFDK-EWDIHRATAAEVFGVNLE 721
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
V ++R + K + +G+LYGM L QL + AKE I + +P V ++
Sbjct: 722 QVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAKEYIDIYFKRYPKVHEYMQKIRI 781
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
+GYVE+L GR+ +L I N + + A+R A+N+ QG+AADIIKIAMI + +
Sbjct: 782 VAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINAPMQGTAADIIKIAMIKVSDWL 841
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
Q L++QVHDELV EV +++ + ++K ME A L V
Sbjct: 842 ---------------QKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEAVALSV 886
Query: 2162 PLLVKIQVGSTW 2173
PL+V + VG W
Sbjct: 887 PLVVDVGVGGNW 898
Score = 199 (75.1 bits), Expect = 1.0e-43, Sum P(2) = 1.0e-43
Identities = 56/151 (37%), Positives = 88/151 (58%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNL-LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYG 1801
V +L ME+ G+ VD LQA+++ L ++ LE++AY LAG +F+L + + +LY
Sbjct: 508 VPILMKMEMRGVLVDT-AMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYE 566
Query: 1802 HLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARI 1861
LKLPI + G Q PST ++ L L ++P+ VI EHR+L KL + ++
Sbjct: 567 ELKLPIFK-KTPGGQ-PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLP--VQV 622
Query: 1862 SMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
++++ +H + QT T+TGRLS PNLQ
Sbjct: 623 HPASRR--IHTSYNQTVTSTGRLSSNNPNLQ 651
Score = 38 (18.4 bits), Expect = 7.6e-27, Sum P(2) = 7.6e-27
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 1785 MKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTL 1844
+KF + + + H+ L +K + + D + L H H ++P+I++ + L
Sbjct: 445 VKFEDVAGKGVKQISFNHVTL------DKATAYAAEDAD-VTLQLH-HKLMPLIEKEKNL 496
Query: 1845 AKL 1847
K+
Sbjct: 497 KKV 499
>UNIPROTKB|Q9KVN3 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 381 (139.2 bits), Expect = 7.2e-43, Sum P(3) = 7.2e-43
Identities = 97/252 (38%), Positives = 138/252 (54%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R F+ + W ++A DYSQIELR+MAH S D AL+ + D+ AA G D
Sbjct: 695 RQAFV-APHGWKIMAVDYSQIELRIMAHLSGDQALLDAF-RDGKDIHAATAAEIIGVPID 752
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
V S++R + K + +G++YGM L++QL EA+E + + +PGV ++ S
Sbjct: 753 QVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRS 812
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
Q GYVE++ GR+ L +I N + A+R A+N+ QG+AADIIK AM+ + I
Sbjct: 813 RAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWI 872
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
+ D GR +LL+QVHDELV EV S + E S VQ+ MESAA L V
Sbjct: 873 ER---EGD-----------GRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAAELAV 918
Query: 2162 PLLVKIQVGSTW 2173
PL+ + G W
Sbjct: 919 PLVAEAGHGDNW 930
Score = 180 (68.4 bits), Expect = 7.2e-43, Sum P(3) = 7.2e-43
Identities = 52/151 (34%), Positives = 85/151 (56%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNL-LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYG 1801
V VL+ +E G+ +D + L A++ + +L LE+ AY LAG F+L + + +L+
Sbjct: 539 VPVLSRIERTGVMID-DMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFE 597
Query: 1802 HLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARI 1861
+KLP+ + G PST++ L L ++P+ V+ E+R LAKL + + + I
Sbjct: 598 QMKLPVLQKTPSGT--PSTNEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKM--I 653
Query: 1862 SMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
+ ST + +H + Q TATGRLS +PNLQ
Sbjct: 654 NPSTGR--VHTSYHQAVTATGRLSSTDPNLQ 682
Score = 41 (19.5 bits), Expect = 7.2e-43, Sum P(3) = 7.2e-43
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 234 NASLLLQASLRKCDKSSKSTLNTTACYTPE-PSIVKTYVRETPKS 277
NA L Q + KCD + + T TP+ +++ Y + KS
Sbjct: 242 NAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKS 286
Score = 38 (18.4 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1122 RDSTKGLHGKLEYRLGIT 1139
RD+ L+GKL ++ +T
Sbjct: 272 RDALMSLYGKLAFKSWLT 289
Score = 37 (18.1 bits), Expect = 1.9e-42, Sum P(3) = 1.9e-42
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 1178 FKVARGMVQALQENAG 1193
F+ ++ M Q L+EN G
Sbjct: 226 FRGSKTMAQKLEENRG 241
>TIGR_CMR|VC_0108 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 381 (139.2 bits), Expect = 7.2e-43, Sum P(3) = 7.2e-43
Identities = 97/252 (38%), Positives = 138/252 (54%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R F+ + W ++A DYSQIELR+MAH S D AL+ + D+ AA G D
Sbjct: 695 RQAFV-APHGWKIMAVDYSQIELRIMAHLSGDQALLDAF-RDGKDIHAATAAEIIGVPID 752
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
V S++R + K + +G++YGM L++QL EA+E + + +PGV ++ S
Sbjct: 753 QVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRS 812
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
Q GYVE++ GR+ L +I N + A+R A+N+ QG+AADIIK AM+ + I
Sbjct: 813 RAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWI 872
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
+ D GR +LL+QVHDELV EV S + E S VQ+ MESAA L V
Sbjct: 873 ER---EGD-----------GRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAAELAV 918
Query: 2162 PLLVKIQVGSTW 2173
PL+ + G W
Sbjct: 919 PLVAEAGHGDNW 930
Score = 180 (68.4 bits), Expect = 7.2e-43, Sum P(3) = 7.2e-43
Identities = 52/151 (34%), Positives = 85/151 (56%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNL-LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYG 1801
V VL+ +E G+ +D + L A++ + +L LE+ AY LAG F+L + + +L+
Sbjct: 539 VPVLSRIERTGVMID-DMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFE 597
Query: 1802 HLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARI 1861
+KLP+ + G PST++ L L ++P+ V+ E+R LAKL + + + I
Sbjct: 598 QMKLPVLQKTPSGT--PSTNEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKM--I 653
Query: 1862 SMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
+ ST + +H + Q TATGRLS +PNLQ
Sbjct: 654 NPSTGR--VHTSYHQAVTATGRLSSTDPNLQ 682
Score = 41 (19.5 bits), Expect = 7.2e-43, Sum P(3) = 7.2e-43
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 234 NASLLLQASLRKCDKSSKSTLNTTACYTPE-PSIVKTYVRETPKS 277
NA L Q + KCD + + T TP+ +++ Y + KS
Sbjct: 242 NAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKS 286
Score = 38 (18.4 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1122 RDSTKGLHGKLEYRLGIT 1139
RD+ L+GKL ++ +T
Sbjct: 272 RDALMSLYGKLAFKSWLT 289
Score = 37 (18.1 bits), Expect = 1.9e-42, Sum P(3) = 1.9e-42
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 1178 FKVARGMVQALQENAG 1193
F+ ++ M Q L+EN G
Sbjct: 226 FRGSKTMAQKLEENRG 241
>UNIPROTKB|Q3ABL3 [details] [associations]
symbol:polA "DNA polymerase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278 SMART:SM00279
SMART:SM00475 SMART:SM00482 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_360471.1 ProteinModelPortal:Q3ABL3
STRING:Q3ABL3 GeneID:3728305 KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 383 (139.9 bits), Expect = 7.9e-43, Sum P(3) = 7.9e-43
Identities = 96/252 (38%), Positives = 140/252 (55%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R FIPS +++ADYSQIELRL+AHFS++P LI K D+ A+ G S +
Sbjct: 592 RKMFIPSPGYDYIVSADYSQIELRLLAHFSEEPKLIEAYQKGE-DIHRKTASEVFGVSLE 650
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
V + R K + +GI+YG+ L L A + IK++ +++P V +L V
Sbjct: 651 EVTPEMRAHAKSVNFGIVYGISDFGLGRDLKIPREVAGKYIKNYFANYPKVREYLDELVR 710
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
+ +KGYV +L GR+R++ ++ N + +R A+N+ QGSAADIIK+AMIN+
Sbjct: 711 TAREKGYVTTLFGRRRYIPELSSKNRTVQGFGERTAMNTPLQGSAADIIKLAMINV---- 766
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
+ L A K + RLLL VHDELVLEV ++E +LV+ MES L V
Sbjct: 767 -------EKELKAR----KLKSRLLLSVHDELVLEVPAEELEEVKALVKGVMESVVELKV 815
Query: 2162 PLLVKIQVGSTW 2173
PL+ ++ G W
Sbjct: 816 PLIAEVGAGKNW 827
Score = 171 (65.3 bits), Expect = 7.9e-43, Sum P(3) = 7.9e-43
Identities = 55/155 (35%), Positives = 79/155 (50%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLK 1804
VLA ME GI VD E + L +++ L ++ Y LAG +F+L + + +L+ L
Sbjct: 439 VLAQMEHTGIQVDREALKEMSLELGEQIEELIREIYVLAGEEFNLNSPRQLGVILFEKLG 498
Query: 1805 LPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMS 1864
LP+ + K K STD L+ L H I+ I +R L KL + + L I+
Sbjct: 499 LPVIK---KTKTGYSTDAEVLEELLPFHEIIGKILNYRQLMKLKSTYTDGLMPL--INER 553
Query: 1865 TQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVE 1899
T K LH + QT T TGRL+ EPNLQ + +E
Sbjct: 554 TGK--LHTTFNQTGTLTGRLASSEPNLQNIPIRLE 586
Score = 44 (20.5 bits), Expect = 7.9e-43, Sum P(3) = 7.9e-43
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 750 VVRTILTAAN-----LGGKDPDHIV-ELCDEVVQEGHSVLIFCSSR 789
+VR +L N L G + D I+ L +GH V+I+ + R
Sbjct: 89 LVREVLKVLNVPYIELDGYEADDIIGHLSRAFAGQGHEVVIYTADR 134
>TIGR_CMR|CHY_1650 [details] [associations]
symbol:CHY_1650 "DNA polymerase I" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 RefSeq:YP_360471.1
ProteinModelPortal:Q3ABL3 STRING:Q3ABL3 GeneID:3728305
KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 383 (139.9 bits), Expect = 7.9e-43, Sum P(3) = 7.9e-43
Identities = 96/252 (38%), Positives = 140/252 (55%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R FIPS +++ADYSQIELRL+AHFS++P LI K D+ A+ G S +
Sbjct: 592 RKMFIPSPGYDYIVSADYSQIELRLLAHFSEEPKLIEAYQKGE-DIHRKTASEVFGVSLE 650
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
V + R K + +GI+YG+ L L A + IK++ +++P V +L V
Sbjct: 651 EVTPEMRAHAKSVNFGIVYGISDFGLGRDLKIPREVAGKYIKNYFANYPKVREYLDELVR 710
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
+ +KGYV +L GR+R++ ++ N + +R A+N+ QGSAADIIK+AMIN+
Sbjct: 711 TAREKGYVTTLFGRRRYIPELSSKNRTVQGFGERTAMNTPLQGSAADIIKLAMINV---- 766
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
+ L A K + RLLL VHDELVLEV ++E +LV+ MES L V
Sbjct: 767 -------EKELKAR----KLKSRLLLSVHDELVLEVPAEELEEVKALVKGVMESVVELKV 815
Query: 2162 PLLVKIQVGSTW 2173
PL+ ++ G W
Sbjct: 816 PLIAEVGAGKNW 827
Score = 171 (65.3 bits), Expect = 7.9e-43, Sum P(3) = 7.9e-43
Identities = 55/155 (35%), Positives = 79/155 (50%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLK 1804
VLA ME GI VD E + L +++ L ++ Y LAG +F+L + + +L+ L
Sbjct: 439 VLAQMEHTGIQVDREALKEMSLELGEQIEELIREIYVLAGEEFNLNSPRQLGVILFEKLG 498
Query: 1805 LPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMS 1864
LP+ + K K STD L+ L H I+ I +R L KL + + L I+
Sbjct: 499 LPVIK---KTKTGYSTDAEVLEELLPFHEIIGKILNYRQLMKLKSTYTDGLMPL--INER 553
Query: 1865 TQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVE 1899
T K LH + QT T TGRL+ EPNLQ + +E
Sbjct: 554 TGK--LHTTFNQTGTLTGRLASSEPNLQNIPIRLE 586
Score = 44 (20.5 bits), Expect = 7.9e-43, Sum P(3) = 7.9e-43
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 750 VVRTILTAAN-----LGGKDPDHIV-ELCDEVVQEGHSVLIFCSSR 789
+VR +L N L G + D I+ L +GH V+I+ + R
Sbjct: 89 LVREVLKVLNVPYIELDGYEADDIIGHLSRAFAGQGHEVVIYTADR 134
>TIGR_CMR|SO_4669 [details] [associations]
symbol:SO_4669 "DNA polymerase I" species:211586
"Shewanella oneidensis MR-1" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 HSSP:P00582 HOGENOM:HOG000020999
RefSeq:NP_720184.1 ProteinModelPortal:Q8E8J5 GeneID:1172251
KEGG:son:SO_4669 PATRIC:23529003 ProtClustDB:CLSK907759
Uniprot:Q8E8J5
Length = 922
Score = 365 (133.5 bits), Expect = 3.4e-42, Sum P(3) = 3.4e-42
Identities = 95/252 (37%), Positives = 140/252 (55%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R FI + E +LAADYSQIELR+MAH S+D L+ ++ D+ AA G D
Sbjct: 683 RQAFI-APEGRKILAADYSQIELRIMAHLSQDAGLLNAFAEGK-DIHRATAAEVFGTDFD 740
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
SV S++R + K + +G++YGM L+ QL+ NEA+ I ++ + +PGV ++ +
Sbjct: 741 SVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFARYPGVLRYMEETRA 800
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
S GYV +L GR+ +L +I+ N + A+R A+N+ QG+AADIIK AMI+I I
Sbjct: 801 SAADLGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMISIADWI 860
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
K D+ +G +++QVHDELV EVD + V + M AA L V
Sbjct: 861 -----KTDT---------QGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKAANLDV 906
Query: 2162 PLLVKIQVGSTW 2173
LL + +G W
Sbjct: 907 ELLAEAGIGDNW 918
Score = 179 (68.1 bits), Expect = 3.4e-42, Sum P(3) = 3.4e-42
Identities = 50/150 (33%), Positives = 80/150 (53%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGH 1802
+++L+D+E G+ +D Q L +K+ LE KAY +AG KF+L + + + +
Sbjct: 527 IHILSDIERQGVFIDSMLLGQQSEELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEK 586
Query: 1803 LKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARIS 1862
L P+ + KG PST + L L + P+ VI EHR+L KL + + + ++
Sbjct: 587 LGYPVIKKTPKGA--PSTAEEVLVELALDFPLPKVILEHRSLTKLKSTYTDKLPLM--VN 642
Query: 1863 MSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
T + +H + Q + ATGRLS EPNLQ
Sbjct: 643 AKTGR--VHTSYHQANAATGRLSSSEPNLQ 670
Score = 52 (23.4 bits), Expect = 3.4e-42, Sum P(3) = 3.4e-42
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 1587 KRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQ 1620
+++ I+E ++K N+K I VL +A +++Q
Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLANAGITLQ 429
Score = 40 (19.1 bits), Expect = 6.0e-41, Sum P(3) = 6.0e-41
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 557 VAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616
VAE++ + + GK A L L + + A + + LE L + + G +L D
Sbjct: 358 VAELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILEDAKLKKVGQNLKYD 417
Query: 617 TSV 619
SV
Sbjct: 418 ISV 420
>UNIPROTKB|F1M179 [details] [associations]
symbol:F1M179 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR001098
InterPro:IPR002298 Pfam:PF00476 PRINTS:PR00868 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
GeneTree:ENSGT00640000091560 IPI:IPI00777551
Ensembl:ENSRNOT00000058067 ArrayExpress:F1M179 Uniprot:F1M179
Length = 773
Score = 330 (121.2 bits), Expect = 6.9e-42, Sum P(3) = 6.9e-42
Identities = 104/361 (28%), Positives = 174/361 (48%)
Query: 1652 GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRR 1711
G+D + +W++ P D + P+ E V K L E + S + + C
Sbjct: 296 GLDPRVAAWLIDPSD---TAPSFEDLVAKHL--EKSIIVKPSSTFNDASINIVSQNVCVN 350
Query: 1712 VAQTRALCSVLWKLLVSXXXXXXXXXXXXXXVNVLADMELWGIGVDMEGCLQARNLLQKK 1771
+ L L L + + +LA ME I +D E + LL
Sbjct: 351 LKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKISIDKEEMERTSALLGAH 410
Query: 1772 LRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPI--PEGH--NKGKQHP-STDKHCLD 1826
L+ LE++A+ +AG +F + + + +L+G LKL + H G Q+ ST + L+
Sbjct: 411 LKKLEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLN 470
Query: 1827 LLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSM 1886
L+ HP+ +I E+R + K+ + + + LA + +K ++ W QT T TGRLS
Sbjct: 471 SLQDLHPLPKIILEYRQVHKIKSTFIDGL--LAYM----KKGSISSTWNQTGTVTGRLSA 524
Query: 1887 EEP--NLQ-CVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIE 1943
+ P N+Q H + F + + G E + I+ R F+ S E + LAAD+SQIE
Sbjct: 525 KHPPSNVQGSKSHPLSFSPPWD--FKGKEE-ETATISPRTLFV-SSEGYTFLAADFSQIE 580
Query: 1944 LRLMAHFSKDPALIGLLSKPH-GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGM 2002
LR++AH S DP L+ L + DVF+ + ++W + V +R+QTK+++Y ++YG
Sbjct: 581 LRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGA 640
Query: 2003 G 2003
G
Sbjct: 641 G 641
Score = 215 (80.7 bits), Expect = 6.9e-42, Sum P(3) = 6.9e-42
Identities = 59/150 (39%), Positives = 85/150 (56%)
Query: 2038 VAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINI 2097
V S + GYV S+ GR+R L +I N + +++A+RQAVN + QGSAAD+ K+AMI I
Sbjct: 632 VVYSVVYGAGYVASILGRRRPLPRICAQNQQLRAQAERQAVNFVVQGSAADLCKLAMIRI 691
Query: 2098 HSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAA 2157
+ + P +L A RL+ Q+HDEL+ EV+ + I E +LV++ MES
Sbjct: 692 FAAVATS---P--TLTA---------RLVAQIHDELLFEVEDTQIPEFAALVRRIMESLQ 737
Query: 2158 L-------LLVPLLVKIQVGSTWGSLEPFQ 2180
L VPL V + +G +WG L P Q
Sbjct: 738 QVQTLELQLQVPLKVNLSIGRSWGHLTPLQ 767
Score = 45 (20.9 bits), Expect = 6.9e-42, Sum P(3) = 6.9e-42
Identities = 19/65 (29%), Positives = 25/65 (38%)
Query: 1342 EAATTAPRNDKS-SSFIFPVP---MEHSDKPS---LEANQISKKVDLESAGEKLLETSDN 1394
E T P K+ S I P +E S +PS L A Q+ + L+ D
Sbjct: 16 EHEKTQPLETKNPKSLINQTPRGSVELSSQPSITKLSAGQVQNSISSSGLSSYLIPQCDQ 75
Query: 1395 ELSAL 1399
E S L
Sbjct: 76 EASVL 80
Score = 42 (19.8 bits), Expect = 7.4e-11, Sum P(3) = 7.4e-11
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 1360 VPMEHSDKPSLEANQISKKVDLES---AGEKLLETSDNELSALVEG 1402
+ E ++ S KK++ E+ AGE+ L S+N+L ++ G
Sbjct: 395 IDKEEMERTSALLGAHLKKLEQEAHFVAGEQFLIMSNNQLREILFG 440
Score = 38 (18.4 bits), Expect = 3.7e-41, Sum P(3) = 3.7e-41
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 450 SVLIVHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLD---LS 506
SVL HE+ + ++ S+ + +P ++ S + T S+G +++ + LS
Sbjct: 12 SVLAEHEKTQPLETKNPKSLINQTPRGSVEL-----SSQPSITKLSAGQVQNSISSSGLS 66
Query: 507 SWL 509
S+L
Sbjct: 67 SYL 69
>TIGR_CMR|DET_1391 [details] [associations]
symbol:DET_1391 "DNA-directed DNA polymerase I"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR002562
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_182100.1 ProteinModelPortal:Q3Z6P9
STRING:Q3Z6P9 GeneID:3229334 KEGG:det:DET1391 PATRIC:21609809
ProtClustDB:CLSK836946 BioCyc:DETH243164:GJNF-1392-MONOMER
Uniprot:Q3Z6P9
Length = 903
Score = 367 (134.2 bits), Expect = 7.3e-42, Sum P(2) = 7.3e-42
Identities = 91/256 (35%), Positives = 135/256 (52%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R F P +LLA DYSQI+LR++AH S+DPALI D+ T AAR
Sbjct: 666 RAFIAPP--GTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQ-DIHTATAARLLNIPPS 722
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
V ++R K + +G++YGM L + S EA + IK++ +P VA +
Sbjct: 723 KVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIKAYFEKYPRVAVYFSEIKQ 782
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
+GYVE+L GR+R++ +I N + A+R A+N QG++ADIIK+AM+ +
Sbjct: 783 QVRTQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRL---- 838
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
D L + LK R LLLQVHDEL+ EV + + L+ + M A +
Sbjct: 839 -------DEKLKE--EKLKSR--LLLQVHDELIFEVPKTELGRMSDLLVETMSGAVAFEI 887
Query: 2162 PLLVKIQVGSTWGSLE 2177
PL V+++ G+ WG +E
Sbjct: 888 PLKVELKSGANWGDME 903
Score = 174 (66.3 bits), Expect = 7.3e-42, Sum P(2) = 7.3e-42
Identities = 50/148 (33%), Positives = 79/148 (53%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLK 1804
+L ME GI +D + +++ LE+ Y AG F++ + + +L+ LK
Sbjct: 512 ILLGMERTGIMLDTDLLKAMAEKTGRQIFKLEEDIYARAGHNFNIGSPQQLGRILFDELK 571
Query: 1805 LPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMS 1864
LP+ + K K ST L+ L+ +H IV +I E+R L KL + L ++ + ++
Sbjct: 572 LPVIK---KTKTGYSTGAEVLEELKGKHRIVDLILEYRMLVKLKSTYLDTLPRM--VNPH 626
Query: 1865 TQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
T++ LH + QT TATGRLS EPNLQ
Sbjct: 627 TRR--LHTSFNQTRTATGRLSSSEPNLQ 652
Score = 44 (20.5 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 550 TSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602
T G S AE+L L ++ L+L Y + K+ +L+ L + H R
Sbjct: 578 TKTGYSTGAEVL--EELKGKHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTR 628
>UNIPROTKB|P00582 [details] [associations]
symbol:polA species:83333 "Escherichia coli K-12"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IDA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA;IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA;IMP]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0006261
GO:GO:0005622 SUPFAM:SSF53098 EMBL:L19201 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
EMBL:V00317 EMBL:J01663 EMBL:J01664 PIR:A92360 RefSeq:NP_418300.1
RefSeq:YP_491586.1 PDB:1D8Y PDB:1D9D PDB:1D9F PDB:1DPI PDB:1KFD
PDB:1KFS PDB:1KLN PDB:1KRP PDB:1KSP PDB:1QSL PDB:2KFN PDB:2KFZ
PDB:2KZM PDB:2KZZ PDBsum:1D8Y PDBsum:1D9D PDBsum:1D9F PDBsum:1DPI
PDBsum:1KFD PDBsum:1KFS PDBsum:1KLN PDBsum:1KRP PDBsum:1KSP
PDBsum:1QSL PDBsum:2KFN PDBsum:2KFZ PDBsum:2KZM PDBsum:2KZZ
ProteinModelPortal:P00582 SMR:P00582 DIP:DIP-10524N IntAct:P00582
MINT:MINT-1225247 SWISS-2DPAGE:P00582 PaxDb:P00582 PRIDE:P00582
EnsemblBacteria:EBESCT00000001399 EnsemblBacteria:EBESCT00000014390
GeneID:12933188 GeneID:948356 KEGG:ecj:Y75_p3322 KEGG:eco:b3863
PATRIC:32123225 EchoBASE:EB0739 EcoGene:EG10746
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
BioCyc:EcoCyc:EG10746-MONOMER BioCyc:ECOL316407:JW3835-MONOMER
BioCyc:MetaCyc:EG10746-MONOMER SABIO-RK:P00582 BindingDB:P00582
ChEMBL:CHEMBL4298 DrugBank:DB00548 EvolutionaryTrace:P00582
Genevestigator:P00582 TIGRFAMs:TIGR00593 Uniprot:P00582
Length = 928
Score = 379 (138.5 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 90/252 (35%), Positives = 143/252 (56%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R FI + E++++++ADYSQIELR+MAH S+D L+ ++ D+ AA G +
Sbjct: 690 RQAFI-APEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGK-DIHRATAAEVFGLPLE 747
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
+V S++R K + +G++YGM L+ QLN EA++ + + +PGV ++ +
Sbjct: 748 TVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRA 807
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
++GYVE+L GR+ +L IK N ++ A+R A+N+ QG+AADIIK AMI +
Sbjct: 808 QAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAV---- 863
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
D+ L A + R R+++QVHDELV EV + + + ME+ L V
Sbjct: 864 -------DAWLQAE----QPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDV 912
Query: 2162 PLLVKIQVGSTW 2173
PLLV++ G W
Sbjct: 913 PLLVEVGSGENW 924
Score = 153 (58.9 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 49/150 (32%), Positives = 78/150 (52%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGH 1802
V VL+ +E G+ +D + L +L LEKKA+ +AG +F+L + + +L+
Sbjct: 534 VPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEK 593
Query: 1803 LKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARIS 1862
+ P G PST + L+ L ++P+ VI E+R LAKL + + + I+
Sbjct: 594 QGIK-PLKKTPGGA-PSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLM--IN 649
Query: 1863 MSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
T + +H + Q TATGRLS +PNLQ
Sbjct: 650 PKTGR--VHTSYHQAVTATGRLSSTDPNLQ 677
>TIGR_CMR|CPS_4978 [details] [associations]
symbol:CPS_4978 "DNA polymerase I" species:167879
"Colwellia psychrerythraea 34H" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_271617.1 ProteinModelPortal:Q47UA6 SMR:Q47UA6
STRING:Q47UA6 GeneID:3519378 KEGG:cps:CPS_4978 PATRIC:21472749
BioCyc:CPSY167879:GI48-4979-MONOMER Uniprot:Q47UA6
Length = 936
Score = 337 (123.7 bits), Expect = 2.3e-40, Sum P(4) = 2.3e-40
Identities = 83/252 (32%), Positives = 132/252 (52%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R FI +++ I+ A DYSQIELR+MAH S D L+ S+ D+ AA
Sbjct: 697 RQAFIAPKDHKIV-AIDYSQIELRIMAHLSNDKGLVTAFSEGK-DIHRATAAEIFAVELG 754
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
V + +R K + +G++YGM L++QL+ +A+E + +PGV +++
Sbjct: 755 EVTTDQRRSAKAINFGLIYGMSAFGLAKQLHIGRQQAQEYQDKYFQRYPGVLTYMEDTRQ 814
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
++GYVE+L GR+ +L I N K A+R A+N+ QG+AADIIK AM+ + S +
Sbjct: 815 QASEQGYVETLYGRRLYLPDINAKNGMRKKAAERAAINAPMQGTAADIIKKAMLAVDSWL 874
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
L N R ++ +QVHDEL+ E+ +++E + + M A L V
Sbjct: 875 ----------LEQN----DDRIKMTMQVHDELIFEIHQDIVEETTAKLVTLMNDAVELSV 920
Query: 2162 PLLVKIQVGSTW 2173
PL+ + +G W
Sbjct: 921 PLIAEAGIGDNW 932
Score = 182 (69.1 bits), Expect = 2.3e-40, Sum P(4) = 2.3e-40
Identities = 52/148 (35%), Positives = 81/148 (54%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLK 1804
VLA ME G+ +D + + L ++L LE +A+ LAG F+L + + +L+ LK
Sbjct: 543 VLARMEQTGVLIDSDILAEQSFTLGQRLDELEIEAHNLAGKSFNLASPKQLQQILFEDLK 602
Query: 1805 LPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMS 1864
+P+ + KG PST + L L ++P+ VI E+R L+KL + + + +S
Sbjct: 603 IPVIKKTPKGA--PSTAEEVLQELALDYPLPKVILENRGLSKLKSTYTDKLPLM--VSDK 658
Query: 1865 TQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
T + LH + Q TATGRLS +PNLQ
Sbjct: 659 TNR--LHTSYHQAVTATGRLSSTDPNLQ 684
Score = 61 (26.5 bits), Expect = 2.3e-40, Sum P(4) = 2.3e-40
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 1580 EMIKQRW--KRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQ--RFGGL------NLVG 1629
E + + W ++ ++E + ++K N+K VL H +++Q F + N V
Sbjct: 401 EQLDKEWVLAQLKPLLESKTIKKIGQNLKYDANVLSHYDIALQGIEFDTMIESYCYNSVA 460
Query: 1630 TSLGLENVGSSFLLLSPVHLKD 1651
T ++ + +L VH +D
Sbjct: 461 TRHNMDALALKYLDYQTVHFED 482
Score = 48 (22.0 bits), Expect = 2.3e-40, Sum P(4) = 2.3e-40
Identities = 30/130 (23%), Positives = 52/130 (40%)
Query: 99 AQPQATQKVISRCSSKEGNSEVGCHMKDGSAHIPESLELKQFPTDFLSLYCXXXXXXXXX 158
A+ Q+VI+ +G ++G +++D +P S +L D + L
Sbjct: 216 AEHGTMQEVIANADKVKG--KIGENLRDALEQLPLSYQLATIKCD-VELEQTAGELAASE 272
Query: 159 XXXXKLKD-HKRHSSPSLL-----GGED-----NKIAKKKYCVSNLLQSGEQTTCSNAKN 207
L + +++ LL GG D + +AKK S GEQ A +
Sbjct: 273 PDVDALAELYQKFELKRLLADLGKGGSDVGASTSSVAKKTKADSTA-SVGEQAVEIKAVD 331
Query: 208 IEETQSGFIV 217
+E+TQ I+
Sbjct: 332 VEKTQYDIIL 341
Score = 37 (18.1 bits), Expect = 6.9e-38, Sum P(4) = 6.9e-38
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1372 ANQIS-KKVDLESAGEKLLETSD 1393
A Q++ ++D+E AG E +D
Sbjct: 488 AKQLTFNQIDIEKAGHYAAEDAD 510
>UNIPROTKB|P0A550 [details] [associations]
symbol:polA "DNA polymerase I" species:1773 "Mycobacterium
tuberculosis" [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:BX842577 GO:GO:0005622
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 EMBL:L11920 PIR:C70559
RefSeq:NP_216145.1 RefSeq:NP_336121.1 RefSeq:YP_006515018.1
ProteinModelPortal:P0A550 SMR:P0A550 PRIDE:P0A550
EnsemblBacteria:EBMYCT00000000077 EnsemblBacteria:EBMYCT00000072282
GeneID:13316408 GeneID:885074 GeneID:924198 KEGG:mtc:MT1665
KEGG:mtu:Rv1629 KEGG:mtv:RVBD_1629 PATRIC:18125424
TubercuList:Rv1629 HOGENOM:HOG000020997 Uniprot:P0A550
Length = 904
Score = 372 (136.0 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 91/252 (36%), Positives = 139/252 (55%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
RD F+ L+ ADYSQIE+R+MAH S D LI + D+ + +A+R G D
Sbjct: 664 RDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE-DLHSFVASRAFGVPID 722
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
V + R + K + YG+ YG+ LS+QL S+ EA E++ ++ + F GV +L V
Sbjct: 723 EVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFARFGGVRDYLRAVVE 782
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
+ GY ++ GR+R+L ++ N + + A+R A+N+ QGSAADIIK+AMI + +
Sbjct: 783 RARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIQVDKAL 842
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
++ LA+ R+LLQVHDEL+ E+ P + +LV+ M A L V
Sbjct: 843 ------NEAQLAS---------RMLLQVHDELLFEIAPGERERVEALVRDKMGGAYPLDV 887
Query: 2162 PLLVKIQVGSTW 2173
PL V + G +W
Sbjct: 888 PLEVSVGYGRSW 899
Score = 126 (49.4 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 44/150 (29%), Positives = 72/150 (48%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLK 1804
VLA ME GI VD+ + ++ ++R + AY + G + +L + + VL+ L
Sbjct: 511 VLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELG 570
Query: 1805 LPIPEGHNKGKQHPSTDKHCLDLL--RHEHPIVPVIKEHRTLAKLLNCTLGSICSLARIS 1862
+P + G +TD L L + HP + + HR + +L T+ + L ++
Sbjct: 571 MPKTKRTKTGY---TTDADALQSLFDKTGHPFLQHLLAHRDVTRL-KVTVDGL--LQAVA 624
Query: 1863 MSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
+ +H + QT ATGRLS EPNLQ
Sbjct: 625 ADGR---IHTTFNQTIAATGRLSSTEPNLQ 651
Score = 52 (23.4 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 21/92 (22%), Positives = 44/92 (47%)
Query: 563 LRRLISTGKMALLVLPYVSICAEKAEHLEVLLE-PLGRHVRSYYGNQGGGSLPKDTSVAV 621
L R+ ST + + LP + A K E + ++ P+ ++S +G+Q +D +
Sbjct: 492 LARIDSTALLGEMELPVQRVLA-KMESAGIAVDLPMLTELQSQFGDQ-----IRDAA--- 542
Query: 622 CTIEKANSLVNRMLEEGRLSEIGIIVIDELHM 653
E A ++ + + G ++ +++ DEL M
Sbjct: 543 ---EAAYGVIGKQINLGSPKQLQVVLFDELGM 571
Score = 49 (22.3 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 1621 RFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKK 1680
R GL +VGT L + G + + V DG + + L PDD+ + L K
Sbjct: 338 RRAGLTVVGTHL--PHGGDATAMA--VAAADGEGAYLDTATLTPDDDAALAAWLADPAKP 393
Query: 1681 RLSSEAAAAANR-SGR-W 1696
+ EA AA + +GR W
Sbjct: 394 KALHEAKAAVHDLAGRGW 411
Score = 42 (19.8 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 13/63 (20%), Positives = 28/63 (44%)
Query: 744 YSKKMDVVRTILTAANL------GGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTAR 797
++ ++D+ + +L A + G + D I L + EG+ VL+ R + +
Sbjct: 98 FAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSD 157
Query: 798 HVS 800
V+
Sbjct: 158 DVT 160
>DICTYBASE|DDB_G0274419 [details] [associations]
symbol:DDB_G0274419 species:44689 "Dictyostelium
discoideum" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001098 Pfam:PF00476
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:AAFI02000012
GO:GO:0003887 eggNOG:COG0749 RefSeq:XP_644204.1
ProteinModelPortal:Q86HT8 EnsemblProtists:DDB0167627 GeneID:8619633
KEGG:ddi:DDB_G0274421 InParanoid:Q86HT8 Uniprot:Q86HT8
Length = 519
Score = 379 (138.5 bits), Expect = 2.4e-36, Sum P(3) = 2.4e-36
Identities = 106/278 (38%), Positives = 162/278 (58%)
Query: 1919 INARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWT-G 1977
IN R+ FI S+E + L+A DY+QIELR+MAH+SKD LI DV M+A+R G
Sbjct: 218 INIRNSFI-SREGYSLVALDYNQIELRIMAHYSKDKHLIEYFESGK-DVINMMASRLIDG 275
Query: 1978 RSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLH 2037
++V + RD+ KR++YGILYG+ N+L + L S +EA+E I +F F V+S+
Sbjct: 276 VDPNNVKKEIRDKVKRIVYGILYGIQKNSLHKLLGVSLDEAQEHINNFNLKFEEVSSF-- 333
Query: 2038 VAVSSCHQKGYVESLKGR-KRFL--SKI--KFGNNKEKSKAQRQAVNSICQGSAADIIKI 2092
+ ++S + G + ++ R +RF S I ++ S + QA+NSI QGS+ADIIK+
Sbjct: 334 IKINSQIKNGKILTIGNRIRRFQDHSSIIPSTSSSSSLSSSPIQAINSIMQGSSADIIKM 393
Query: 2093 AMINIHSIIVGGVYKPDSSLAANFQM-LKGRCRLLLQVHDELVLEVDPSVIK-EAVSL-- 2148
AMINI + ++ + K + N + + G R +LQVHDELV E+ ++ E++ L
Sbjct: 394 AMINIMNELLLPLSKLREFIGVNSKGDVVGTPRFVLQVHDELVFEIPDQLLSDESIRLDL 453
Query: 2149 -VQKCMESAAL---LLVPLLVKIQVGSTWGSLEPFQAD 2182
++ ME LLVPL+ + +G +GSL D
Sbjct: 454 LIKYQMERIGNHFNLLVPLVTSLSIGKKYGSLSRVMVD 491
Score = 65 (27.9 bits), Expect = 2.4e-36, Sum P(3) = 2.4e-36
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 1842 RTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
R L KL + + I R + K+ W QT T TGRLS +PN Q
Sbjct: 99 RKLTKLNSSYIKIILKSNRTN--NLKFQFSCLWNQTGTTTGRLSSTKPNFQ 147
Score = 41 (19.5 bits), Expect = 2.4e-36, Sum P(3) = 2.4e-36
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 784 IFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
+ C + K ++ + + K +K+ + +V++ DS+ I
Sbjct: 6 VCCDTSK-LDNCSEKILKRIKEINCSVYNEDSKLI 39
>TIGR_CMR|GSU_0541 [details] [associations]
symbol:GSU_0541 "DNA polymerase I" species:243231
"Geobacter sulfurreducens PCA" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HSSP:P00582
RefSeq:NP_951599.1 ProteinModelPortal:Q74FR5 SMR:Q74FR5
GeneID:2685802 KEGG:gsu:GSU0541 PATRIC:22023837
BioCyc:GSUL243231:GH27-525-MONOMER Uniprot:Q74FR5
Length = 891
Score = 349 (127.9 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 95/253 (37%), Positives = 138/253 (54%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R FI ++E ++L+ADYSQIELR++AH S+D ++ D+ T AA G +
Sbjct: 653 RRAFI-AEEGHLILSADYSQIELRVLAHLSEDRVFCDAFARDE-DIHTRTAAEVFGLFPE 710
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
V + R Q K + +G++YG G +L++QL ++ AKE I ++ + PG ++L V+
Sbjct: 711 MVTPEMRRQAKAINFGVIYGQGAFSLAKQLGITTKVAKEFIDNYFARHPGARAFLDGCVA 770
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
+GYV +L GR+ + I N ++ AQR AVN QGSAADIIK AM+ + +
Sbjct: 771 EAEARGYVTTLMGRRLPIPDIASSNGNIRAFAQRNAVNYPIQGSAADIIKAAMVRVTERM 830
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVS-LVQKCMESAALLL 2160
L + RL++QVHDELV EV P + A+ LVQ ME AA L
Sbjct: 831 ------RREGLTS---------RLIMQVHDELVFEV-PEGERTAMERLVQHEMEHAAPLR 874
Query: 2161 VPLLVKIQVGSTW 2173
VPL + VG W
Sbjct: 875 VPLRADVNVGRNW 887
Score = 143 (55.4 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 52/153 (33%), Positives = 75/153 (49%)
Query: 1743 VNVLADMELWGIGVDME--GCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLY 1800
V +LA+ME G+ +D+ G L A L +L LE++ LA F+L + + VL+
Sbjct: 495 VPILAEMETAGVKLDLALLGELSAG--LGSQLTALEEQVMALAPEPFNLNSPKQLGEVLF 552
Query: 1801 GHLKLPIPEGHNKGKQHPSTDKHCLDLLRHE-HPIVPVIKEHRTLAKLLNCTLGSICSLA 1859
+KLP + K K ST+ L+ L H I I +R LAKL + ++ L
Sbjct: 553 EKMKLPAGK-KTKTKTGWSTNVEELERLAEAGHEIAAAILRYRGLAKLKSTYTDALPRLV 611
Query: 1860 RISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
+ +H + QT T TGRLS EPNLQ
Sbjct: 612 HPASGR----VHTSYNQTVTNTGRLSSSEPNLQ 640
Score = 39 (18.8 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 1598 VRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCI 1657
VRK N+K QVL+ R G +V + + + +S+L+ +PV G+D
Sbjct: 376 VRKVGQNLKYDYQVLR-------RHG---IVMAGVWCDTMVASYLI-NPVRSGHGLDSLA 424
Query: 1658 V 1658
V
Sbjct: 425 V 425
Score = 38 (18.4 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 1831 EHPIVPVIKEHRTLAKLLNCTL 1852
E P+VP++ E T L+ L
Sbjct: 491 EMPLVPILAEMETAGVKLDLAL 512
Score = 37 (18.1 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 999 SAQDS-LRWLCHRKFL 1013
S +D+ WL HR FL
Sbjct: 460 SCEDADAAWLLHRLFL 475
>UNIPROTKB|Q48PV5 [details] [associations]
symbol:polA "DNA polymerase I" species:264730 "Pseudomonas
syringae pv. phaseolicola 1448A" [GO:0008408 "3'-5' exonuclease
activity" evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_272564.1 ProteinModelPortal:Q48PV5 SMR:Q48PV5
STRING:Q48PV5 GeneID:3558423 KEGG:psp:PSPPH_0259 PATRIC:19969530
Uniprot:Q48PV5
Length = 921
Score = 343 (125.8 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 85/252 (33%), Positives = 140/252 (55%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R F+ + + + LLAADYSQIELR+MAH ++D L+ DV AA G +
Sbjct: 683 RQAFV-APKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL-DVHRATAAEVFGVELE 740
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
+V + R K + +G++YGM L++Q+ +++ + + + +PGV ++ +
Sbjct: 741 NVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
++G+VE++ GR+ +L I N + A+R A+N+ QG+AADIIK AM+ ++
Sbjct: 801 QAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNG-- 858
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
+ +S L A R++LQVHDELVLEV ++ + ++ M AA L V
Sbjct: 859 ----WLEESGLDA---------RVILQVHDELVLEVREDLVDQISEQIRPHMSGAAELAV 905
Query: 2162 PLLVKIQVGSTW 2173
PLLV++ VG+ W
Sbjct: 906 PLLVEVGVGNNW 917
Score = 136 (52.9 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 44/151 (29%), Positives = 78/151 (51%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNL-LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYG 1801
V VLA +E G VD L +++ L K+ LE++A+ +AG +F+L + + +LY
Sbjct: 526 VPVLAGIERQGALVDAN-LLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYE 584
Query: 1802 HLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARI 1861
L +PI G Q + + +L + P+ V+ ++R+++KL + + +I
Sbjct: 585 KLGMPILSKTATG-QASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPE--QI 641
Query: 1862 SMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
+ T + +H + Q TGRLS +PNLQ
Sbjct: 642 NPRTGR--IHTSYHQAVAVTGRLSSSDPNLQ 670
>UNIPROTKB|Q0C2B4 [details] [associations]
symbol:polA "DNA polymerase I" species:228405 "Hyphomonas
neptunium ATCC 15444" [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_760129.1 ProteinModelPortal:Q0C2B4
STRING:Q0C2B4 GeneID:4289511 KEGG:hne:HNE_1412 PATRIC:32215643
HOGENOM:HOG000020999 BioCyc:HNEP228405:GI69-1446-MONOMER
Uniprot:Q0C2B4
Length = 929
Score = 339 (124.4 bits), Expect = 7.6e-34, Sum P(2) = 7.6e-34
Identities = 94/258 (36%), Positives = 137/258 (53%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R FI + N +L++ADYSQIELR++AH + PAL K D+ M A+ G +
Sbjct: 688 RQAFIAEEGN-VLVSADYSQIELRILAHMADIPALKQAF-KDGLDIHAMTASEMFGVPIE 745
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
+ R Q K + +GI+YG+ L QL S EA + IK++ FPG+ ++
Sbjct: 746 GMDPMVRRQAKAINFGIIYGISGFGLGRQLGIPSGEANQYIKTYFERFPGIRQYMDETKE 805
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
G+V++ GRK L IK +S A+RQA+N+ QGSAADIIK AMI +
Sbjct: 806 FARATGFVKTAFGRKIHLPDIK-SKGPARSFAERQAINAPIQGSAADIIKRAMIRM---- 860
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESA---AL 2158
P++ A + ++LLQVHDELV E ++ + LVQK M +A +L
Sbjct: 861 ------PEALAEAGL-----KAQMLLQVHDELVFECPEKEAEKLIKLVQKTMAAADGPSL 909
Query: 2159 LL-VPLLVKIQVGSTWGS 2175
L VPL+V+ + TW +
Sbjct: 910 RLSVPLVVEAKAADTWAA 927
Score = 127 (49.8 bits), Expect = 7.6e-34, Sum P(2) = 7.6e-34
Identities = 43/150 (28%), Positives = 73/150 (48%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLK 1804
VLA+ME G+ VD + + +++ LE +A+ AG F++ + + +L+ +
Sbjct: 533 VLAEMEQAGVKVDRDMLSRLSADFNQRMAALEAEAHEQAGRSFNIGSPKQLGEILFDEMN 592
Query: 1805 LPIPEGHNKGKQHP-STDKHCLDLLRHE-HPIVPVIKEHRTLAKLLNCTLGSICSLARIS 1862
LP G K K TD L+ L + H + I + R L+KL + ++ A I+
Sbjct: 593 LP---GGKKTKTGAWVTDGDVLEGLAADGHALPRTIVDWRMLSKLRSTYTEAL--QAAIN 647
Query: 1863 MSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
T + +H ++ TGRLS +PNLQ
Sbjct: 648 KKTGR--VHTSYMMAGAQTGRLSSTDPNLQ 675
Score = 38 (18.4 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 613 LPKDTSVAVCTIE-KANSLVNRMLEEGRLSEIGIIVIDELHM 653
L D + + +E +A+ R G ++G I+ DE+++
Sbjct: 552 LSADFNQRMAALEAEAHEQAGRSFNIGSPKQLGEILFDEMNL 593
>TIGR_CMR|CJE_0383 [details] [associations]
symbol:CJE_0383 "DNA polymerase type I" species:195099
"Campylobacter jejuni RM1221" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 RefSeq:YP_178402.1 ProteinModelPortal:Q5HWD3
STRING:Q5HWD3 GeneID:3231145 KEGG:cjr:CJE0383 PATRIC:20042470
BioCyc:CJEJ195099:GJC0-388-MONOMER Uniprot:Q5HWD3
Length = 879
Score = 266 (98.7 bits), Expect = 4.5e-32, Sum P(3) = 4.5e-32
Identities = 62/183 (33%), Positives = 103/183 (56%)
Query: 1921 ARDF---FIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTG 1977
A+D+ F+ +++ + ++ DYSQIELR++AHFS+D L+ + D+ A G
Sbjct: 645 AKDYKSCFV-AKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDE-DIHARTAIMIFG 702
Query: 1978 RSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLH 2037
S + R K + +G++YGMG TLS+ L ++ AK I+ + +F + +
Sbjct: 703 ESN----YETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFE 758
Query: 2038 VAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKA--QRQAVNSICQGSAADIIKIAMI 2095
+ Q G++ +L GRKR+ F N K A +R+++NSI QGSAAD+IK+AM+
Sbjct: 759 TVKNEAKQNGFITTLSGRKRYFD---FENAKPMQIAMYERESINSILQGSAADVIKLAML 815
Query: 2096 NIH 2098
I+
Sbjct: 816 EIN 818
Score = 197 (74.4 bits), Expect = 4.5e-32, Sum P(3) = 4.5e-32
Identities = 48/151 (31%), Positives = 83/151 (54%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGH 1802
+ ++ ME GI +D + +++ L ++ YTL +F+L + + ++L+
Sbjct: 493 IKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEK 552
Query: 1803 LKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICS-LARI 1861
LKLP KGK STD+ L+ L +HP + I ++R LAKL + + C L ++
Sbjct: 553 LKLP---SRKKGKTGYSTDEKVLNALLDKHPAITKILDYRELAKLYS----TYCEPLLKL 605
Query: 1862 SMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
++ + ++ +LQT TATGRLS ++PNLQ
Sbjct: 606 ALKDKNSRIYSSFLQTGTATGRLSSKDPNLQ 636
Score = 94 (38.1 bits), Expect = 4.3e-14, Sum P(3) = 4.3e-14
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 2090 IKIAMI---NIHSIIVGG---VYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIK 2143
++IAM +I+SI+ G V K + L N ++ + + +L+LQ+HDEL+ EV + +
Sbjct: 788 MQIAMYERESINSILQGSAADVIKL-AMLEINKELNEDK-KLILQIHDELIFEVKDDLCE 845
Query: 2144 EAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177
V + ME+ L V L + WG L+
Sbjct: 846 NFVKKTRDIMENIVKLKVKLKTSSSIAKNWGDLK 879
Score = 41 (19.5 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 913 RAGRTGIDT--KGESMLICKPEEVKKIMG------LLNESCPPLHSCLSEDKNGMTHA 962
+ G+TG T K + L+ K + KI+ L + C PL +DKN ++
Sbjct: 559 KKGKTGYSTDEKVLNALLDKHPAITKILDYRELAKLYSTYCEPLLKLALKDKNSRIYS 616
Score = 39 (18.8 bits), Expect = 4.5e-32, Sum P(3) = 4.5e-32
Identities = 25/127 (19%), Positives = 54/127 (42%)
Query: 1315 FKSLGLNVPQFSRPILSTATENSTGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQ 1374
+++L L + SR +L + EN+ ++ A+ N + + I ++P L+ +
Sbjct: 211 YENLTLVRNERSRNLLLESKENAFLSKKLASLYD-NLEVQNLIEKATYP-DEEPLLKILE 268
Query: 1375 ISKKVDLESAGEKLLETSDNELSALVEGGSITELQQK-FDAENXXXXXXXXXXXXXEFNV 1433
I + +L + +KL + DN+ L ++ + + K F+ N +
Sbjct: 269 ILEHYELNTLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGL 328
Query: 1434 NASEIKI 1440
+ E KI
Sbjct: 329 DTKEAKI 335
Score = 39 (18.8 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1011 KFLEWNEDTKLYST 1024
K L++ E KLYST
Sbjct: 584 KILDYRELAKLYST 597
Score = 38 (18.4 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 991 KPFQDVVKSAQDSLRWLCHRKF 1012
K F++ +K+ + + LC +F
Sbjct: 516 KKFENEIKNLSEEIYTLCEDRF 537
>TIGR_CMR|ECH_0080 [details] [associations]
symbol:ECH_0080 "DNA polymerase I" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_506910.1 ProteinModelPortal:Q2GI23
STRING:Q2GI23 GeneID:3927608 KEGG:ech:ECH_0080 PATRIC:20575721
BioCyc:ECHA205920:GJNR-80-MONOMER Uniprot:Q2GI23
Length = 944
Score = 227 (85.0 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 60/186 (32%), Positives = 103/186 (55%)
Query: 1920 NA-RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGR 1978
NA R F+ +++ + L++ADYSQIELR+MAH + A D+ ++ A +
Sbjct: 704 NAIRRAFV-ARKGYKLVSADYSQIELRIMAHIAGVQAFKDAFFLDQ-DIHSITAEQIF-- 759
Query: 1979 SEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHV 2038
S+ R + K + +GI+YGM L++QL S +EA I ++ S+P + S+++
Sbjct: 760 CTQSLDKNLRRKAKSINFGIIYGMSAFGLAKQLGISRSEANAYIDNYFKSYPEIQSYMNN 819
Query: 2039 AVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIH 2098
GY ++ GRK F+ I N ++ ++R A+N+ QG++ADIIK++MI++
Sbjct: 820 IKIYAKTYGYTRTIFGRKCFIRDINSSNAAARNFSERAAINAPLQGTSADIIKMSMIHLF 879
Query: 2099 SIIVGG 2104
I G
Sbjct: 880 DKITHG 885
Score = 138 (53.6 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 44/151 (29%), Positives = 75/151 (49%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGH 1802
+ VL ME G+ +D++ + +K+ LE + Y LAG +F++ ++ + VL+
Sbjct: 550 IRVLDSMEKVGMLIDIDILKTLSSTFSEKVSVLENEIYRLAGTEFNIASSKQLGTVLFD- 608
Query: 1803 LKLPIPEGHNKGKQHPSTDKHCL-DLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARI 1861
K+ I + STD L DL+ +E I I + R KL + ++ +I
Sbjct: 609 -KMGIKKSKKLSSGSYSTDAEVLNDLVFNEIEIADKILQWRHFTKLKSTYTDALGK--QI 665
Query: 1862 SMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
+ ++ + +H + STATGRLS PNLQ
Sbjct: 666 NSNSGR--IHTFYSMISTATGRLSSSNPNLQ 694
Score = 123 (48.4 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 2125 LLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPF 2179
L+LQVHDEL+ E+ + AV ++ K ME L VPL V I++G+ W L P+
Sbjct: 887 LILQVHDELLFEILEEYVDYAVEVITKVMEGIVKLSVPLKVDIRIGTNWADLVPY 941
Score = 40 (19.1 bits), Expect = 3.3e-20, Sum P(3) = 3.3e-20
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 1011 KFLEWNEDTKLYST 1024
K L+W TKL ST
Sbjct: 643 KILQWRHFTKLKST 656
>DICTYBASE|DDB_G0282679 [details] [associations]
symbol:DDB_G0282679 "DNA polymerase nu" species:44689
"Dictyostelium discoideum" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001098 Pfam:PF00476 SMART:SM00482
dictyBase:DDB_G0282679 EMBL:AAFI02000047 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 eggNOG:COG0749 RefSeq:XP_640197.1
EnsemblProtists:DDB0204913 GeneID:8623737 KEGG:ddi:DDB_G0282679
InParanoid:Q54S42 OMA:IIQGSSA Uniprot:Q54S42
Length = 1459
Score = 344 (126.2 bits), Expect = 5.2e-28, Sum P(3) = 5.2e-28
Identities = 102/284 (35%), Positives = 161/284 (56%)
Query: 1904 NEDIYGGNAEVDHCKI-NARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSK 1962
N +I N D I N R+ FI S+E + L+ DY+Q+ELR++AHFS+D LI
Sbjct: 1165 NNNINNNNNNDDDDNIINIRNSFI-SREGFSLVVLDYNQVELRIIAHFSRDKHLIEYFES 1223
Query: 1963 PHGDVFTMIAARWTGRSE---DSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAK 2019
DV M+A R + R + ++V + RD+ KR++YGILYG+ +L + LN +A
Sbjct: 1224 G-SDVINMMAVRLSDRDDLDVNNVDKETRDRVKRIVYGILYGIQAFSLGKLLNIPIYKAS 1282
Query: 2020 EKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVN 2079
+ IK+F F GV++++ + S+ +K +V G++ + K+ ++K K+KA VN
Sbjct: 1283 DHIKNFYFKFDGVSNFIQITKSNA-EKSHVVPTLGKR--IRKL---DSKFKTKA----VN 1332
Query: 2080 SICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDP 2139
SI QGS+ADIIK+AMI I + ++ P +L +N R LLQVHDELV EV
Sbjct: 1333 SIIQGSSADIIKLAMITI----MNELFLPLLNLNSNNN--NKIPRFLLQVHDELVFEVPD 1386
Query: 2140 SVIKE-AVS---LVQKCMESAAL---LLVPLLVKIQVGSTWGSL 2176
+ + ++ L++ ME+ + + VPL + +G +GSL
Sbjct: 1387 EYLGDNSIRMDLLIKYQMENVSNYFNMCVPLSTSLSIGKKYGSL 1430
Score = 85 (35.0 bits), Expect = 5.2e-28, Sum P(3) = 5.2e-28
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 1838 IKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCV 1894
+K H LL T + + R S + + + W QT TATGRLS EPNLQ +
Sbjct: 1051 LKGHYIEPYLLKYTNTTTTTKTR-SNTNSTFQISCQWNQTGTATGRLSSSEPNLQTI 1106
Score = 41 (19.5 bits), Expect = 5.2e-28, Sum P(3) = 5.2e-28
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 36 KITVEV-SPSAKGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLEIDKYSKDEKN-QA 93
KIT V P K DN + N D+ + + + ++ + N +++ Y+ D + Q+
Sbjct: 571 KITQFVYDPPTKRP-DNTVNNEDDNNNQKRVHRIQTDKLKEPNGFIKVGGYNSDCNSIQS 629
Query: 94 L--LSDQAQP 101
L L +Q +P
Sbjct: 630 LEQLYNQFKP 639
Score = 37 (18.1 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 1331 STATENSTGEEEAATTAPRNDKSSSFIFPVPMEHSD 1366
+T + T + + P K + F++ P + D
Sbjct: 550 TTTSPTFTLNSNSPSNTPNKKKITQFVYDPPTKRPD 585
>TIGR_CMR|NSE_0675 [details] [associations]
symbol:NSE_0675 "DNA polymerase I" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335
OMA:EQRRYAK ProtClustDB:PRK05755 RefSeq:YP_506553.1
ProteinModelPortal:Q2GD93 STRING:Q2GD93 GeneID:3932157
KEGG:nse:NSE_0675 PATRIC:22681369
BioCyc:NSEN222891:GHFU-689-MONOMER Uniprot:Q2GD93
Length = 829
Score = 200 (75.5 bits), Expect = 3.7e-26, Sum P(4) = 3.7e-26
Identities = 52/170 (30%), Positives = 91/170 (53%)
Query: 1928 SQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQE 1987
++E L ADYSQIELR++A+ + L L+ D+ T+ A++ D +
Sbjct: 586 AKEGHHFLCADYSQIELRILAYIANVERLKCALASGT-DLHTLTASQIF--KTDKITPDL 642
Query: 1988 RDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKG 2047
R++ K + +GI+YG+ LS+QL S EA I+ + +P + +++ + +
Sbjct: 643 RNKAKAVNFGIVYGITNFGLSKQLAISKEEAASYIQKYFDEYPEIKIYMNHIRNQARKDT 702
Query: 2048 YVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINI 2097
YV+++ RK + I N A+R A+N+ QG+AADII+ AM+ +
Sbjct: 703 YVKTMMNRKCPIQNINSNNRTISLVAERSAINAPIQGTAADIIRTAMVRM 752
Score = 160 (61.4 bits), Expect = 3.7e-26, Sum P(4) = 3.7e-26
Identities = 44/160 (27%), Positives = 75/160 (46%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGH 1802
+N + ME GI +D+E L + KL +E K + +AG FSL + + VL+
Sbjct: 426 INAIKHMEKNGISLDVEQLLSLSTQISGKLEEIESKIFDIAGKTFSLQSPKQLGKVLFEE 485
Query: 1803 LKLPIPEGHNKGKQHPSTDKHCLDLLRHE-HPIVPVIKEHRTLAKLLNCTLGSICSLARI 1861
+++P+ + G STD L L + + I + R KL + + L ++
Sbjct: 486 MQIPVQKKLKSGLS--STDNEVLTSLSIQGYEIADYLLSWRHYIKLKTAYIDPL--LLKV 541
Query: 1862 SMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFK 1901
+ + +K+ + + T T TGRLS PNLQ + E +
Sbjct: 542 NPNEEKHRISTTYSATLTLTGRLSSSNPNLQNIPREKEIR 581
Score = 97 (39.2 bits), Expect = 3.7e-26, Sum P(4) = 3.7e-26
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 2125 LLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLEPFQAD 2182
+++QVHDELV E++ VI++ +++ ME + +PLLV+++ G G LE + +
Sbjct: 762 MVMQVHDELVFELETDVIQQLAKKIKRIMEESHG--IPLLVELKHGPNLGELEDLKLE 817
Score = 37 (18.1 bits), Expect = 3.7e-26, Sum P(4) = 3.7e-26
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 492 TPSSSGMLKDCLDLSSWLPSEI 513
TP + +L++C+D+ + P EI
Sbjct: 83 TPQFA-LLRECVDVLNLNPLEI 103
>UNIPROTKB|E3W982 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC096768 HGNC:HGNC:18536 IPI:IPI00965450
ProteinModelPortal:E3W982 SMR:E3W982 Ensembl:ENST00000508591
UCSC:uc003hon.1 ArrayExpress:E3W982 Bgee:E3W982 Uniprot:E3W982
Length = 489
Score = 323 (118.8 bits), Expect = 7.2e-26, Sum P(3) = 7.2e-26
Identities = 68/156 (43%), Positives = 99/156 (63%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LPS++ +Y + +GI KLY WQ CL ++ V +R+NL+Y TS GK+ VAEILML+ L+
Sbjct: 319 LPSKVRDLYAQFKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELL 378
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK---DTSVAVCTI 624
K L++LPYV+I EK L LG V Y G++G K S+ + TI
Sbjct: 379 CCRKDVLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATI 438
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
EK +SLVN ++E GR+ +G++V+DELHM+ + +RG
Sbjct: 439 EKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRG 474
Score = 48 (22.0 bits), Expect = 7.2e-26, Sum P(3) = 7.2e-26
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 444 DVQEKDSVLIVHERK-LDISSQGIDSITSDSPTNVIKKPVGN-EKSDEAGTPSSSGMLKD 501
++Q + L H K D S +++ + P N I++P N E S + T S K
Sbjct: 205 NLQNSSNDLGDHSMKERDWKSSSHNTVNEELPHNCIEQPQQNDESSSKVRTSSDMNRRKS 264
Query: 502 CLD 504
D
Sbjct: 265 IKD 267
Score = 45 (20.9 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 32 EKDAKITVEVSPSAKGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNL-SLEIDKYSK 87
E +K+ + + ++ ++LKN+ ++ + SR + +K L S EI+ K
Sbjct: 248 ESSSKVRTSSDMNRRKSIKDHLKNAMTGNAKAQTPIFSRSKQLKDTLLSEEINVAKK 304
Score = 42 (19.8 bits), Expect = 7.2e-26, Sum P(3) = 7.2e-26
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 163 KLKDHKRHSSPSLLGGEDNKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGF 215
+L +HK+H++ ++ K K ++ + G T K+ E QSG+
Sbjct: 132 QLPEHKKHATDFATENLCSESIKNKLSITTI---GNLTELQTDKHTEN-QSGY 180
>TIGR_CMR|SPO_3844 [details] [associations]
symbol:SPO_3844 "DNA polymerase I" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279
SMART:SM00474 SMART:SM00475 SMART:SM00482 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HOGENOM:HOG000020999 RefSeq:YP_169032.1
ProteinModelPortal:Q5LLS7 GeneID:3195865 KEGG:sil:SPO3844
PATRIC:23381191 Uniprot:Q5LLS7
Length = 933
Score = 236 (88.1 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 72/252 (28%), Positives = 124/252 (49%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R+ F+ N +LL+ DYSQIELR++AH + PAL + D+ M A+ D
Sbjct: 694 REAFVAEPGN-VLLSLDYSQIELRILAHIADIPALKQAFADGL-DIHAMTASEMFDVPLD 751
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
+ + R + K + +G++YG+ L+ L EA+E I + FPG+ +++ ++
Sbjct: 752 QMTPEVRRRAKAINFGVIYGISGFGLARNLRIPRAEAQEFIDRYFERFPGIRTYMDDTIA 811
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
+ G+V++L GR+ +I A+R A+N+ QG+AAD+I+ AM+ + I
Sbjct: 812 FAKEHGFVQTLFGRRIHTPEIN-AKGPHAGFARRAAINAPIQGTAADVIRRAMVRMPDAI 870
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLV 2161
L A +L+ LL +V +E V + I A +++ + A L V
Sbjct: 871 --------RDLPAKM-LLQVHDELLFEVAEEAVEDT----IAAARDIMEGAADPAVRLDV 917
Query: 2162 PLLVKIQVGSTW 2173
L+V G+ W
Sbjct: 918 RLVVDAGRGANW 929
Score = 159 (61.0 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 49/151 (32%), Positives = 78/151 (51%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGH 1802
V VLA+ME+ G+ VD E + N +K+ LE + + LAG F++ + A + +L+
Sbjct: 538 VPVLAEMEMHGVKVDREVLSRMSNAFAQKMAGLEAEIHELAGEPFNVGSPAQVGEILFDK 597
Query: 1803 LKLPIPEGHNKGKQHP-STDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARI 1861
+ L EG KGK ST L+ L EH + I + R L+KL + ++ + I
Sbjct: 598 MSL---EGGKKGKTGKYSTPADVLEDLATEHELPARILDWRQLSKLKSTYTDALQT--HI 652
Query: 1862 SMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
+ T + +H + T TGRL+ +PNLQ
Sbjct: 653 NPDTGR--VHTSYSITGANTGRLASTDPNLQ 681
Score = 46 (21.3 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 872 VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTR---YRQMAGRAGRTGIDTKGESMLI 928
+L + L G N+ IF + + ID T Y G G G+DT E L
Sbjct: 414 MLEDPAILKIGQNMKYDAKIFARYGVAVAPIDDTMLLSYAMHGGLHGH-GMDTLSERYLS 472
Query: 929 CKPEEVKKIMG 939
P +K ++G
Sbjct: 473 HTPIPIKPLLG 483
Score = 44 (20.5 bits), Expect = 2.6e-25, Sum P(3) = 2.6e-25
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 1435 ASEIKIP-------DTTLSVQLGKNAIGTITSNRDLDLEVQDRPNRDP 1475
A EIK P D ++L K + + +N LD + D RDP
Sbjct: 224 AEEIKQPKRRQTLIDMRAQIELSKRLV-ELDANTPLDFTLDDLELRDP 270
Score = 39 (18.8 bits), Expect = 8.5e-25, Sum P(3) = 8.5e-25
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 1260 EASISEIVKALFESSSWIAEAQRR 1283
+AS E V+ +WIA+A+ R
Sbjct: 322 DASRYECVRDAAALETWIAQARER 345
Score = 39 (18.8 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 1225 GVRAEIVELTTIPYVKGSRAR 1245
G+ AEI EL P+ GS A+
Sbjct: 569 GLEAEIHELAGEPFNVGSPAQ 589
>TAIR|locus:2059969 [details] [associations]
symbol:AT2G42270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 EMBL:AC002561 GO:GO:0030529
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 UniGene:At.12448 UniGene:At.43726 KO:K12854
OMA:RDTHESS GO:GO:0008026 IPI:IPI00539463 PIR:T00936
RefSeq:NP_181756.1 ProteinModelPortal:O48534 SMR:O48534
STRING:O48534 PaxDb:O48534 PRIDE:O48534 EnsemblPlants:AT2G42270.1
GeneID:818828 KEGG:ath:AT2G42270 TAIR:At2g42270 InParanoid:O48534
PhylomeDB:O48534 ProtClustDB:CLSN2679454 ArrayExpress:O48534
Genevestigator:O48534 Uniprot:O48534
Length = 2172
Score = 273 (101.2 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 96/294 (32%), Positives = 148/294 (50%)
Query: 700 LQIVGMSATMPNVAAVADWLQAAL------YETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
+++VG+SAT+PN VA +L+ L ++ ++RPVPL + +G I KK +R
Sbjct: 671 IRLVGLSATLPNCDDVASFLRVDLKNGLFIFDRSYRPVPLGQQY-IG--INVKKP--LRR 725
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813
++ + +V + + H VLIF SRK TAR + + + + +
Sbjct: 726 FQLMNDICYQK---VVAVAGK-----HQVLIFVHSRKETAKTARAI-----RDTAMANDT 772
Query: 814 DSEFIDITSAIDALRRCPAGL--DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
S F+ S + +C AGL + L+E LP G A HHAGLT +RE+VE +R G ++
Sbjct: 773 LSRFLKEDSQSREILKCLAGLLKNNDLKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQ 832
Query: 872 VLTATSTLAAGVNLPARRVIFR-----QPRIGRDF-IDGTRYRQMAGRAGRTGIDTKGES 925
VL +T+TLA GVNLPA VI + P G + QM GRAGR D +GE
Sbjct: 833 VLISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEG 892
Query: 926 MLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIH 979
++I +++ + L+NE P +S+ + + E+V G I E H
Sbjct: 893 IIITGYSKLQYYLRLMNEQLPIESQFISKLADQLN---AEIVLGTIQNAREACH 943
Score = 124 (48.7 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 41/152 (26%), Positives = 76/152 (50%)
Query: 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRL---------ISTG 570
RG+ +L Q + ++ + + N++ CA T AGK+ VA + +L +L + G
Sbjct: 501 RGMQQLNRVQSK-VYGTALFKADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHG 559
Query: 571 KMALL-VLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQG-GGSLPKDTSVAVCTIEKAN 628
++ V P ++ AE + L L+ G V+ G+Q G K+T + V T EK +
Sbjct: 560 NYKIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWD 619
Query: 629 SLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
+ + + + +++IDE+H++ D NRG
Sbjct: 620 IITRKSGDRTYTQLVRLLIIDEIHLL-DDNRG 650
Score = 120 (47.3 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 44/168 (26%), Positives = 75/168 (44%)
Query: 835 DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894
+ L+ETL G+ Y H GL+ ++E+V + G ++V +S+L G L A V+
Sbjct: 1634 EETLKETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVV-- 1691
Query: 895 PRIGRDFIDG----------TRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNES 944
+G F DG + QM GR R +D G+ ++ C + L E+
Sbjct: 1692 --MGTHFYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVIFCHAPRKEYYKKFLYEA 1749
Query: 945 CPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKP 992
P + S L + +A EVVA +++ +D Y+ + + P
Sbjct: 1750 LP-VESHLQHFLHDNFNA--EVVAR-VIENKQDAVDYLTWSFMYRRLP 1793
Score = 109 (43.4 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 48/205 (23%), Positives = 86/205 (41%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL---PYVSICAEKAEHLEVLL-EPLG 598
N+V A T +GK+ AE +LR + A+ V+ P +I E+ E + LG
Sbjct: 1369 NVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLG 1428
Query: 599 RHVRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657
V G L + + + T EK ++L R + + ++ + ++DELH++ Q
Sbjct: 1429 LRVVELTGETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQ 1488
Query: 658 NRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVAD 717
G RY + + + ++IV +S ++ N + +
Sbjct: 1489 G-GQVLEVIVSRMRYIS-------------------SQVGNKIRIVALSTSLANAKDLGE 1528
Query: 718 WLQAAL-----YETNFRPVPLEEYI 737
W+ A+ + N RPVPLE +I
Sbjct: 1529 WIGASSCGVFNFPPNVRPVPLEIHI 1553
>TAIR|locus:2037375 [details] [associations]
symbol:emb1507 "embryo defective 1507" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 EMBL:CP002684 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 GO:GO:0016020 GO:GO:0003676
GO:GO:0030529 EMBL:AC007369 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 KO:K12854 OMA:KWDVLSR
GO:GO:0008026 ProtClustDB:CLSN2679454 IPI:IPI00536616 PIR:E86342
RefSeq:NP_001185050.1 RefSeq:NP_173520.1 UniGene:At.11196
UniGene:At.21273 ProteinModelPortal:Q9SYP1 SMR:Q9SYP1 IntAct:Q9SYP1
STRING:Q9SYP1 PRIDE:Q9SYP1 ProMEX:Q9SYP1 EnsemblPlants:AT1G20960.1
EnsemblPlants:AT1G20960.2 GeneID:838690 KEGG:ath:AT1G20960
TAIR:At1g20960 InParanoid:Q9SYP1 PhylomeDB:Q9SYP1
Genevestigator:Q9SYP1 Uniprot:Q9SYP1
Length = 2171
Score = 261 (96.9 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 96/297 (32%), Positives = 146/297 (49%)
Query: 700 LQIVGMSATMPNVAAVADWLQAAL------YETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
+++VG+SAT+PN VA +L+ L ++ ++RPVPL + +G ++ K + R
Sbjct: 670 IRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQY-IGISV---KKPLQRF 725
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEG---HSVLIFCSSRKGCESTARHVSKFLKKFSINV 810
L N +LC + V G H VLIF SRK TAR + + +
Sbjct: 726 QLM--N----------DLCYQKVLAGAGKHQVLIFVHSRKETSKTARAI-----RDTAMA 768
Query: 811 HSSDSEFIDITSAI-DALRRCPAGL-DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKG 868
+ + S F+ S D L + + L++ LP G A HHAGL+ +RE+VET + +G
Sbjct: 769 NDTLSRFLKEDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQG 828
Query: 869 LVRVLTATSTLAAGVNLPARRVIFR-----QPRIGRDF-IDGTRYRQMAGRAGRTGIDTK 922
V+VL +T+TLA GVNLPA VI + P G + QM GRAGR D
Sbjct: 829 HVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQH 888
Query: 923 GESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIH 979
GE ++I E++ + L+NE P +S+ + + E+V G + E H
Sbjct: 889 GEGIIITGYSELQYYLSLMNEQLPIESQFISKLADQLN---AEIVLGTVQNAREACH 942
Score = 136 (52.9 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 71/307 (23%), Positives = 129/307 (42%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYET-NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IV +S ++ N + +W+ A+ + NF P V I+ + +D+ + A
Sbjct: 1510 IRIVALSTSLANAKDLGEWIGASSHGLFNFPP----GVRPVPLEIHIQGVDI--SSFEAR 1563
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD---S 815
P + + + + ++F +RK TA V N S D
Sbjct: 1564 MQAMTKPTYTAIV--QHAKNKKPAIVFVPTRKHVRLTA--VDLMAYSHMDNPQSPDFLLG 1619
Query: 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTA 875
+ ++ ++ +R + L+ETL G+ Y H GL+ ++E+V + G ++V
Sbjct: 1620 KLEELDPFVEQIR------EETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVM 1673
Query: 876 TSTLAAGVNLPARRVIFRQPRIGRDFIDGTR-----YR-----QMAGRAGRTGIDTKGES 925
+S+L G L A V+ +G + DG Y QM GRA R +D G+
Sbjct: 1674 SSSLCWGTPLTAHLVVV----MGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKC 1729
Query: 926 MLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCT 985
++ C + L E+ P + S L + +A EVVAG +++ +D Y+ T
Sbjct: 1730 VIFCHAPRKEYYKKFLYEAFP-VESQLQHFLHDNFNA--EVVAG-VIENKQDAVDYLTWT 1785
Query: 986 LLNSTKP 992
+ P
Sbjct: 1786 FMYRRLP 1792
Score = 113 (44.8 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 40/152 (26%), Positives = 77/152 (50%)
Query: 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRL---------ISTG 570
+G+ +L Q + ++ + + N++ CA T AGK+ VA + +L++L + G
Sbjct: 500 KGMQQLNRVQSK-VYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHG 558
Query: 571 KMALL-VLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQG-GGSLPKDTSVAVCTIEKAN 628
++ V P ++ AE +L L+ G VR G+Q G ++T + V T EK +
Sbjct: 559 DYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWD 618
Query: 629 SLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
+ + + + +++IDE+H++ D NRG
Sbjct: 619 IITRKSGDRTYTQLVRLLIIDEIHLLHD-NRG 649
Score = 82 (33.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 29/121 (23%), Positives = 54/121 (44%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL---PYVSICAEKAEHLEVLL-EPLG 598
N++ A T +GK+ AE +LR + V+ P +I E+ E + LG
Sbjct: 1368 NVLVAAPTGSGKTICAEFAILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLG 1427
Query: 599 RHVRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657
V G L + + + T EK ++L R + + ++ + ++DELH++ Q
Sbjct: 1428 LRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQ 1487
Query: 658 N 658
+
Sbjct: 1488 H 1488
>GENEDB_PFALCIPARUM|PF14_0234 [details] [associations]
symbol:PF14_0234 "DNA-directed DNA polymerase,
putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
RefSeq:XP_001348408.1 ProteinModelPortal:Q8ILK9
EnsemblProtists:PF14_0234:mRNA GeneID:811816 KEGG:pfa:PF14_0234
EuPathDB:PlasmoDB:PF3D7_1425400 HOGENOM:HOG000281276
ProtClustDB:CLSZ2432457 Uniprot:Q8ILK9
Length = 1236
Score = 191 (72.3 bits), Expect = 6.5e-23, Sum P(5) = 6.5e-23
Identities = 45/166 (27%), Positives = 91/166 (54%)
Query: 781 SVLIFCSSRKGCESTARHVSKFLKKF-SINVHSS-DSEFIDITSAIDALRRCPAGLDPVL 838
+ LIFC ++K CE ++++L S+ + D + ++ I + +C + +
Sbjct: 641 NTLIFCCTKKMCEFYINLINEYLNTLKSLPIPQYIDMKRKELKEKIYNIDKC---IYEKM 697
Query: 839 EETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIG 898
+ + +G+ Y+++ ++ + ++E Y++ + +LT TSTL+ G+NL RVI P +
Sbjct: 698 HKLISNGLCYYYSDISHSVKRLLEVAYKEKTLFLLTCTSTLSVGLNLFVDRVIISSPFVA 757
Query: 899 RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNES 944
++F+ T+Y+QM GRA R KG+S + E KK++ + E+
Sbjct: 758 QNFLTYTQYKQMIGRAARL---KKGDSFIFVDKEYEKKMLNIFKET 800
Score = 125 (49.1 bits), Expect = 6.5e-23, Sum P(5) = 6.5e-23
Identities = 40/154 (25%), Positives = 71/154 (46%)
Query: 484 NEKSDEAGTPSSSGMLKDCLDLSSWLPSEIC-SIYKKRGISKLYPWQVECLH-VDGVLQR 541
+EK +E +K + ++ + I YKK I +LY WQ ECL + V
Sbjct: 22 DEKKNEKLKDVCKNFIKKDYSIHHYVTNPIIIDNYKKEKIKELYEWQDECLRELRKVNWE 81
Query: 542 R--NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599
+ N + A TS GK+ V E+ + + + K + P S+ EK +L+ + + G
Sbjct: 82 KGENFICVAPTSGGKTLVTELFIFEEIKNGKKQIFFLFPLKSLINEKMTYLKNICK--GT 139
Query: 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNR 633
++R G ++ + +CT EK N+ +N+
Sbjct: 140 NIRI-------GVEIEENDIILCTYEKFNNYLNK 166
Score = 83 (34.3 bits), Expect = 6.5e-23, Sum P(5) = 6.5e-23
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMD 749
++I+ MS T+ N++ + W++A Y + +RP ++E+ +Y K D
Sbjct: 242 IKIICMSGTLNNISILKKWMKAKFYISTYRPQEIKEHYVCNFNVYKKVQD 291
Score = 68 (29.0 bits), Expect = 6.5e-23, Sum P(5) = 6.5e-23
Identities = 15/77 (19%), Positives = 43/77 (55%)
Query: 1145 SDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCE 1204
S++Q R + Y++++L + + + +C +K+ +++++ ++ + +++ F +
Sbjct: 1136 SNSQLERKYSKLYLSILLFLYLNDEDIQIICSIYKITPDVLKSIVKHTYMYINILISFFD 1195
Query: 1205 RLGWYDLEGLIAKF-QN 1220
+L + L L+ KF QN
Sbjct: 1196 KLNEWILVCLLKKFLQN 1212
Score = 51 (23.0 bits), Expect = 6.5e-23, Sum P(5) = 6.5e-23
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 622 CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
CT N N LE + I I++IDE H + ++ RG
Sbjct: 188 CTNNNNN---NNNLENLKNDNI-IVIIDEFHHINEKGRG 222
Score = 51 (23.0 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 1266 IVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAEEARIAAFSAFKSLGLNV 1322
I+ + F + +++ Q + +G A ++K G I ++K E ++ + FK N+
Sbjct: 750 IISSPFVAQNFLTYTQYKQMIGRAARLKKGDSFIFVDKEYEKKM--LNIFKETFTNI 804
Score = 39 (18.8 bits), Expect = 5.2e-20, Sum P(5) = 5.2e-20
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 2019 KEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESL 2052
K+ + FK +F + S +H +K +E L
Sbjct: 791 KKMLNIFKETFTNITSTMHANTFEELEKYVIEFL 824
>UNIPROTKB|Q8ILK9 [details] [associations]
symbol:PF14_0234 "DNA-directed DNA polymerase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
RefSeq:XP_001348408.1 ProteinModelPortal:Q8ILK9
EnsemblProtists:PF14_0234:mRNA GeneID:811816 KEGG:pfa:PF14_0234
EuPathDB:PlasmoDB:PF3D7_1425400 HOGENOM:HOG000281276
ProtClustDB:CLSZ2432457 Uniprot:Q8ILK9
Length = 1236
Score = 191 (72.3 bits), Expect = 6.5e-23, Sum P(5) = 6.5e-23
Identities = 45/166 (27%), Positives = 91/166 (54%)
Query: 781 SVLIFCSSRKGCESTARHVSKFLKKF-SINVHSS-DSEFIDITSAIDALRRCPAGLDPVL 838
+ LIFC ++K CE ++++L S+ + D + ++ I + +C + +
Sbjct: 641 NTLIFCCTKKMCEFYINLINEYLNTLKSLPIPQYIDMKRKELKEKIYNIDKC---IYEKM 697
Query: 839 EETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIG 898
+ + +G+ Y+++ ++ + ++E Y++ + +LT TSTL+ G+NL RVI P +
Sbjct: 698 HKLISNGLCYYYSDISHSVKRLLEVAYKEKTLFLLTCTSTLSVGLNLFVDRVIISSPFVA 757
Query: 899 RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNES 944
++F+ T+Y+QM GRA R KG+S + E KK++ + E+
Sbjct: 758 QNFLTYTQYKQMIGRAARL---KKGDSFIFVDKEYEKKMLNIFKET 800
Score = 125 (49.1 bits), Expect = 6.5e-23, Sum P(5) = 6.5e-23
Identities = 40/154 (25%), Positives = 71/154 (46%)
Query: 484 NEKSDEAGTPSSSGMLKDCLDLSSWLPSEIC-SIYKKRGISKLYPWQVECLH-VDGVLQR 541
+EK +E +K + ++ + I YKK I +LY WQ ECL + V
Sbjct: 22 DEKKNEKLKDVCKNFIKKDYSIHHYVTNPIIIDNYKKEKIKELYEWQDECLRELRKVNWE 81
Query: 542 R--NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599
+ N + A TS GK+ V E+ + + + K + P S+ EK +L+ + + G
Sbjct: 82 KGENFICVAPTSGGKTLVTELFIFEEIKNGKKQIFFLFPLKSLINEKMTYLKNICK--GT 139
Query: 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNR 633
++R G ++ + +CT EK N+ +N+
Sbjct: 140 NIRI-------GVEIEENDIILCTYEKFNNYLNK 166
Score = 83 (34.3 bits), Expect = 6.5e-23, Sum P(5) = 6.5e-23
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMD 749
++I+ MS T+ N++ + W++A Y + +RP ++E+ +Y K D
Sbjct: 242 IKIICMSGTLNNISILKKWMKAKFYISTYRPQEIKEHYVCNFNVYKKVQD 291
Score = 68 (29.0 bits), Expect = 6.5e-23, Sum P(5) = 6.5e-23
Identities = 15/77 (19%), Positives = 43/77 (55%)
Query: 1145 SDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCE 1204
S++Q R + Y++++L + + + +C +K+ +++++ ++ + +++ F +
Sbjct: 1136 SNSQLERKYSKLYLSILLFLYLNDEDIQIICSIYKITPDVLKSIVKHTYMYINILISFFD 1195
Query: 1205 RLGWYDLEGLIAKF-QN 1220
+L + L L+ KF QN
Sbjct: 1196 KLNEWILVCLLKKFLQN 1212
Score = 51 (23.0 bits), Expect = 6.5e-23, Sum P(5) = 6.5e-23
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 622 CTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
CT N N LE + I I++IDE H + ++ RG
Sbjct: 188 CTNNNNN---NNNLENLKNDNI-IVIIDEFHHINEKGRG 222
Score = 51 (23.0 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 1266 IVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAEEARIAAFSAFKSLGLNV 1322
I+ + F + +++ Q + +G A ++K G I ++K E ++ + FK N+
Sbjct: 750 IISSPFVAQNFLTYTQYKQMIGRAARLKKGDSFIFVDKEYEKKM--LNIFKETFTNI 804
Score = 39 (18.8 bits), Expect = 5.2e-20, Sum P(5) = 5.2e-20
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 2019 KEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESL 2052
K+ + FK +F + S +H +K +E L
Sbjct: 791 KKMLNIFKETFTNITSTMHANTFEELEKYVIEFL 824
>TIGR_CMR|APH_0001 [details] [associations]
symbol:APH_0001 "DNA polymerase I" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_504640.1 ProteinModelPortal:Q2GLW1 STRING:Q2GLW1
GeneID:3930741 KEGG:aph:APH_0001 PATRIC:20948540
BioCyc:APHA212042:GHPM-43-MONOMER Uniprot:Q2GLW1
Length = 853
Score = 222 (83.2 bits), Expect = 3.9e-22, Sum P(3) = 3.9e-22
Identities = 64/225 (28%), Positives = 114/225 (50%)
Query: 1922 RDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED 1981
R FI +++ L+AADYSQ+EL+++AH + A ++ D+ + A + G +
Sbjct: 616 RSAFI-AEKGHKLIAADYSQMELKILAHIADVKAFRQAFAEGL-DIHVVTAQQIFGEYYE 673
Query: 1982 SVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVS 2041
+ + R + K + +GI+YGMG L+ + S EA E ++ + +P + ++ +
Sbjct: 674 -IDYELRRRAKSINFGIIYGMGSYGLARNIGISRREASEYVEQYFQYYPEIKRYMETTKA 732
Query: 2042 SCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSII 2101
+ GY + GRK F+ I S A+R A+N+ QG+AADI+K AM+ + +
Sbjct: 733 YAKKHGYTITAFGRKCFIEGINSPKRALSSVAERAAINAPIQGTAADIVKKAMVRLQDRL 792
Query: 2102 VGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAV 2146
G +L+ LL++V +E VL V ++KE +
Sbjct: 793 TQGT-----------MLLQVHDELLVEVPEEHVLSV-ARLMKEVM 825
Score = 125 (49.1 bits), Expect = 3.9e-22, Sum P(3) = 3.9e-22
Identities = 40/151 (26%), Positives = 74/151 (49%)
Query: 1743 VNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGH 1802
V V+ ++E GI +D E Q + + LE++ + LAG KF++ ++ + VL+ H
Sbjct: 459 VPVIYELEKTGIKIDTELLKQLSDEFSLSISNLEEEIFGLAGCKFNIASSQQLGKVLFEH 518
Query: 1803 LKLPIPEGHNKGKQHPSTDKHCLDLLRHEH-PIVPVIKEHRTLAKLLNCTLGSICSLARI 1861
+++ + G T+ L L + + I + R KL + ++ + ++
Sbjct: 519 MRIGGAKKMPSGSY--CTNAEVLTALALDGVEVADKILKWRHFTKLKSTYTDAL--VRQV 574
Query: 1862 SMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
+T + +H + T+TATGRLS PNLQ
Sbjct: 575 DANTGR--VHTKYSMTATATGRLSSSNPNLQ 603
Score = 116 (45.9 bits), Expect = 6.0e-11, Sum P(3) = 6.0e-11
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 2125 LLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSL 2176
+LLQVHDEL++EV + L+++ MESA + +PL V I VG WG +
Sbjct: 797 MLLQVHDELLVEVPEEHVLSVARLMKEVMESAVVFSLPLDVNISVGDNWGDM 848
Score = 60 (26.2 bits), Expect = 3.9e-22, Sum P(3) = 3.9e-22
Identities = 27/131 (20%), Positives = 57/131 (43%)
Query: 1179 KVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRA-EIVELTTIP 1237
K R M+ + A ++S+ C + ++EG + K+ RV V+ +E +
Sbjct: 222 KKCRDMLTEYADRAILSRDLISL-CHDV---EVEGDLEKYAKRVPDPVKLMAFLEKYELT 277
Query: 1238 YVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGAR 1297
++G A+ Y + P+ +E E K + + ++ + QR LG+ +++ G
Sbjct: 278 SLEGKVAK--YCKMVAAPIQSSEVVKKENEKCIDKLEEFLEQCQRSGLLGLYIEVEQGFI 335
Query: 1298 KIVLEKAEEAR 1308
+ +E R
Sbjct: 336 STIFAACDETR 346
Score = 52 (23.4 bits), Expect = 2.6e-21, Sum P(3) = 2.6e-21
Identities = 37/165 (22%), Positives = 67/165 (40%)
Query: 1131 KLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQE 1190
KL G N + S Q + R + R + ++ +C +V G L++
Sbjct: 201 KLINEFGSLDNVLNSVEQVAQKKCRDMLTEYADRAILSRDLISLCHDVEV-EG---DLEK 256
Query: 1191 NAGRFASMVSV--FCERLGWYDLEGLIAKFQNRVSFGVRA-EIVELTTIPYVKGSRA--R 1245
A R V + F E+ LEG +AK+ V+ +++ E+V+ +
Sbjct: 257 YAKRVPDPVKLMAFLEKYELTSLEGKVAKYCKMVAAPIQSSEVVKKENEKCIDKLEEFLE 316
Query: 1246 ALYKAGLR-TPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVA 1289
++GL + + + IS I A E+ S+ + +VQ VA
Sbjct: 317 QCQRSGLLGLYIEVEQGFISTIFAACDETRSFTVSSPEKVQKFVA 361
Score = 40 (19.1 bits), Expect = 4.5e-20, Sum P(3) = 4.5e-20
Identities = 26/93 (27%), Positives = 45/93 (48%)
Query: 1046 DDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERF---LELSA-LDQ-SVGNQVG 1100
D L+ + +L+ DL +S +VEVE D E Y +R ++L A L++ + + G
Sbjct: 226 DMLTEYADRAILSRDL----ISLCHDVEVEGDLEKYAKRVPDPVKLMAFLEKYELTSLEG 281
Query: 1101 VSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLE 1133
Y +A AP++ S ++ + KLE
Sbjct: 282 KVAKYCKMVA--APIQSSEVVKKENEKCIDKLE 312
Score = 39 (18.8 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 1011 KFLEWNEDTKLYST 1024
K L+W TKL ST
Sbjct: 552 KILKWRHFTKLKST 565
Score = 38 (18.4 bits), Expect = 7.2e-20, Sum P(3) = 7.2e-20
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 180 DNKIAKKKYC--VSNLLQSGEQTTCSNAKNIEETQ 212
+ K+AK YC V+ +QS E N K I++ +
Sbjct: 280 EGKVAK--YCKMVAAPIQSSEVVKKENEKCIDKLE 312
Score = 38 (18.4 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 1831 EHPIVPVIKE-HRTLAKLLNCTLGSICSLARISMSTQKYTLHG 1872
E P+VPVI E +T K+ L + +S+S + + G
Sbjct: 455 ERPLVPVIYELEKTGIKIDTELLKQLSDEFSLSISNLEEEIFG 497
>UNIPROTKB|F1SU44 [details] [associations]
symbol:F1SU44 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000008903 OMA:NETIATY Uniprot:F1SU44
Length = 1027
Score = 264 (98.0 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 96/290 (33%), Positives = 146/290 (50%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++++G+SAT+PN VA +L+ ++ +FRPVPLE+ VG I KK + R
Sbjct: 646 VRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTY-VG--ITEKKA-IKRF 701
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF-LKKFSINVHS 812
+ + K +H + + VL+F SRK TAR + L+K ++ +
Sbjct: 702 QIMNEIVYEKIMEHAGK---------NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFL 752
Query: 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872
+ +A +C L+ L++ LP G A HHAG+T +R +VE + ++V
Sbjct: 753 REGSASTEVLRTEA-EQCK-NLE--LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQV 808
Query: 873 LTATSTLAAGVNLPARRVIFR-----QPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGESM 926
L +T+TLA GVNLPA VI + P GR + QM GRAGR DTKGE +
Sbjct: 809 LVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGI 868
Query: 927 LICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAE 976
LI E++ + LLN+ P + S + M +A E+V G VQ A+
Sbjct: 869 LITSHGELQYYLSLLNQQLP-IESQMVAKLPDMLNA--EIVLGN-VQNAK 914
Score = 91 (37.1 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 37/132 (28%), Positives = 60/132 (45%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL---------ISTGKMALL-VLPYVSICAEKAEHLEV 592
NL+ CA T AGK+ VA + MLR + I+ ++ + P S+ E
Sbjct: 498 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 557
Query: 593 LLEPLGRHVRSYYGNQGGGSLPKD----TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVI 648
L G V G+ L K+ T + VCT EK + + + E + +I++
Sbjct: 558 RLATYGITVAELTGDH---QLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIIL 614
Query: 649 DELHMVADQNRG 660
DE+H++ D +RG
Sbjct: 615 DEIHLLHD-DRG 625
>ASPGD|ASPL0000051297 [details] [associations]
symbol:AN10194 species:162425 "Emericella nidulans"
[GO:0000393 "spliceosomal conformational changes to generate
catalytic conformation" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:BN001307
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0046540 GO:GO:0000388 GO:GO:0008026
EnsemblFungi:CADANIAT00008099 OMA:AMNEACY Uniprot:C8VMF3
Length = 2208
Score = 271 (100.5 bits), Expect = 3.3e-21, Sum P(4) = 3.3e-21
Identities = 92/287 (32%), Positives = 147/287 (51%)
Query: 700 LQIVGMSATMPNVAAVADWLQA----ALY--ETNFRPVPL-EEYIKVGNAIYSKKMDVVR 752
++IVG+SAT+PN VA +L+ L+ + ++RP PL +E+I V + K++ ++
Sbjct: 699 VRIVGLSATLPNYRDVASFLRVDPAKGLFHFDGSYRPCPLKQEFIGVTDKKPIKQLKIMN 758
Query: 753 TILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV-SKFLKKFSIN-V 810
I + ++E V Q + +LIF SRK TA+++ K L+ +I +
Sbjct: 759 DICY---------NKVIE---HVGQNRNQMLIFVHSRKETAKTAKYLRDKALEMETIGQI 806
Query: 811 HSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLV 870
SDS + AI A + D L++ LP G HHAGL++ +R+ V+ ++ G +
Sbjct: 807 LKSDSA----SRAILA-EEAESVNDAALKDILPYGFGIHHAGLSLADRDSVQALFKDGSI 861
Query: 871 RVLTATSTLAAGVNLPARRVIFR-----QPRIGRDF-IDGTRYRQMAGRAGRTGIDTKGE 924
+VL T+TLA GVNLPA VI + P G + QM GRAGR DT GE
Sbjct: 862 QVLVCTATLAWGVNLPAHTVIIKGTQVYSPEKGSWVELSPQDVLQMLGRAGRPQYDTYGE 921
Query: 925 SMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGI 971
++I E++ + L+N+ P +S+ + M E+V G I
Sbjct: 922 GIIITTQAEIQYYLSLMNQQLPIESQLVSKLADNMN---AEIVLGNI 965
Score = 135 (52.6 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 69/288 (23%), Positives = 127/288 (44%)
Query: 699 GLQIVGMSATMPNVAAVADWLQAALYET-NFRPVPLEEYIKVGNAIYSKKMDVVRTILTA 757
G++IVG+S + N + +W+ A+ + NF P +++ I S + +++ A
Sbjct: 1541 GMRIVGLSVPLSNARDIGEWIGASKHTIYNFSPHARPVPLELH--IQSFSIPHFPSLMLA 1598
Query: 758 ANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF 817
P ++ L + LIF +RK +TA + L SI+ + F
Sbjct: 1599 M----ARPAYLSIL---QLSADKPALIFVPNRKQTRATAIDL---LTACSID--DDEDRF 1646
Query: 818 I--DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTA 875
+ DI L R + L E+L G+ Y+H L+ ++ +V Y G ++V+ A
Sbjct: 1647 LHADIEELQPLLGRVH---ERTLAESLSHGIGYYHEALSQTDKRIVSHLYNIGAIQVVIA 1703
Query: 876 TSTLAAGVNLPARRVIFRQPRI--GRD--FIDG--TRYRQMAGRAGRTGIDTKGESMLIC 929
+ + +NL V+ + GR+ +ID + QM G+A R G D G +L+
Sbjct: 1704 SRDVCWELNLTGHLVVVMGTQFFEGREHRYIDYPISEILQMFGKASRPGQDKVGRGVLMV 1763
Query: 930 KPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAED 977
+ + LNE+ P + S L + M A + ++ G + + +D
Sbjct: 1764 PTVKREYYKKFLNEALP-VESHL---QLYMHDAFVTEISQGTIASTQD 1807
Score = 108 (43.1 bits), Expect = 3.3e-21, Sum P(4) = 3.3e-21
Identities = 38/130 (29%), Positives = 63/130 (48%)
Query: 543 NLVYCASTSAGKSFVAEILMLR-----RLISTGKMAL------LVLPYVSICAEKAEHLE 591
N++ CA T +GK+ VA + +LR R TG++ L + P ++ E+ E+
Sbjct: 550 NMLVCAPTGSGKTNVAMLSILREVGKNRNSQTGEIMLDDFKIVYISPLKALVQEQVENFG 609
Query: 592 VLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDE 650
L P G V G+ Q +T V V T EK + + + E + +I+IDE
Sbjct: 610 RRLAPYGIKVAELTGDRQLTKQQIAETQVIVTTPEKFDVITRKASETSYTKLVRLIIIDE 669
Query: 651 LHMVADQNRG 660
+H++ D+ RG
Sbjct: 670 IHLLHDE-RG 678
Score = 46 (21.3 bits), Expect = 3.3e-21, Sum P(4) = 3.3e-21
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 990 TKPFQDVVKSAQDSLRWLCHRKFLE-WNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDL 1048
T+ Q + S QDS+ WL + F + Y T + S+ E L +L
Sbjct: 1795 TEISQGTIASTQDSVDWLTYTYFYRRLLANPSFYGLTDISHEGL-STFLSELVENTLKEL 1853
Query: 1049 SRAR 1052
S A+
Sbjct: 1854 SEAK 1857
Score = 44 (20.5 bits), Expect = 6.2e-20, Sum P(5) = 6.2e-20
Identities = 17/80 (21%), Positives = 37/80 (46%)
Query: 1564 IYGSSDKNVLTPEHQLEMIKQRWK-----RIGEIMEKRDVRKFTW--NMKVQIQVLKHAA 1616
I SD + TP Q +++ ++W+ R E+ ++ ++ V + +
Sbjct: 1475 ILAGSDLVLATPT-QWDVLSRQWQKRKNVRAVELFVADELHMLGGYGGYVYEVVVSRMHS 1533
Query: 1617 VSIQRFGGLNLVGTSLGLEN 1636
+++Q G+ +VG S+ L N
Sbjct: 1534 IALQTESGMRIVGLSVPLSN 1553
Score = 39 (18.8 bits), Expect = 3.3e-21, Sum P(4) = 3.3e-21
Identities = 27/128 (21%), Positives = 56/128 (43%)
Query: 1831 EHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPN 1890
E I+ + +E +++ L ++G+ +++ I+M T L S T + E
Sbjct: 1855 EAKIIDLDEEDDSVSPLNAASIGAYYNISYITMQT-------FLLSLSARTKLKGILEIV 1907
Query: 1891 LQCVE-HMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAH 1949
E V+ + E I + K + F P ++++LL A +S+++L +
Sbjct: 1908 TAATEFESVQMRRHEEHILRRVYDRVPVKTSQVAFDSPHFKSFVLLQAHFSRMQLPI--D 1965
Query: 1950 FSKDPALI 1957
+KD +I
Sbjct: 1966 LAKDQEVI 1973
Score = 38 (18.4 bits), Expect = 6.2e-20, Sum P(5) = 6.2e-20
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 1190 ENAGRFASMVSVFCERLGW 1208
++AGR + C R GW
Sbjct: 1140 QSAGRILRALFEICLRRGW 1158
>UNIPROTKB|G3MYJ7 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 EMBL:DAAA02050346 EMBL:DAAA02050343
EMBL:DAAA02050344 EMBL:DAAA02050345 Ensembl:ENSBTAT00000064767
Uniprot:G3MYJ7
Length = 605
Score = 249 (92.7 bits), Expect = 1.2e-20, Sum P(4) = 1.2e-20
Identities = 69/200 (34%), Positives = 107/200 (53%)
Query: 761 GGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G K P ++ ++ +++ V+IF S+K CE+ A ++K F+ + E +
Sbjct: 365 GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKL--DFNTDEEKKMVEEV- 421
Query: 820 ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
++AID L L P +E LP G+ HH GL +E +E + +GL++ L AT
Sbjct: 422 FSNAIDCLSDEDKKL-PQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT 480
Query: 877 STLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
T A G+N+PAR V+F R G+DF I Y QM+GRAGR G+D +G +L+ E
Sbjct: 481 ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD-E 539
Query: 933 EVKKIMG--LLNESCPPLHS 950
++ +G LL S PL+S
Sbjct: 540 KMSPTIGKQLLKGSADPLNS 559
Score = 74 (31.1 bits), Expect = 1.2e-20, Sum P(4) = 1.2e-20
Identities = 31/141 (21%), Positives = 61/141 (43%)
Query: 523 SKLYPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579
+K YP+ ++ + + ++++ A TSAGK+ AE + L ++ + P
Sbjct: 131 AKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRV-IFTSPI 189
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR 639
++ +K + + +G G ++ S V T E S++ R E R
Sbjct: 190 KALSNQKYREMYEEFQDVGLMT-------GDVTINPTASCLVMTTEILRSMLYRGSEVMR 242
Query: 640 LSEIGIIVIDELHMVADQNRG 660
E+ ++ DE+H + D RG
Sbjct: 243 --EVAWVIFDEIHYMRDSERG 261
Score = 67 (28.6 bits), Expect = 1.2e-20, Sum P(4) = 1.2e-20
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 703 VGMSATMPNVAAVADWL-----QAA--LYETNFRPVPLEEYI 737
V +SAT+PN A+W+ Q +Y T++RP PL+ YI
Sbjct: 278 VFLSATIPNARQFAEWICHLHKQPCHVIY-TDYRPTPLQHYI 318
Score = 37 (18.1 bits), Expect = 1.2e-20, Sum P(4) = 1.2e-20
Identities = 14/53 (26%), Positives = 19/53 (35%)
Query: 468 SITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKR 520
S+ D T EK G P S+ C D L SE ++ K +
Sbjct: 11 SVFEDDSTTAPGAKKDKEKGKWKGPPGSAEKAGRCFD--GKLQSESTNVGKNK 61
>UNIPROTKB|F5H7E2 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:18734 ChiTaRS:SKIV2L2 EMBL:AC010480
EMBL:AC020728 IPI:IPI01011073 ProteinModelPortal:F5H7E2 SMR:F5H7E2
Ensembl:ENST00000545714 UCSC:uc011cqi.2 ArrayExpress:F5H7E2
Bgee:F5H7E2 Uniprot:F5H7E2
Length = 941
Score = 249 (92.7 bits), Expect = 2.7e-20, Sum P(4) = 2.7e-20
Identities = 69/200 (34%), Positives = 107/200 (53%)
Query: 761 GGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G K P ++ ++ +++ V+IF S+K CE+ A ++K F+ + E +
Sbjct: 266 GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKL--DFNTDEEKKMVEEV- 322
Query: 820 ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
++AID L L P +E LP G+ HH GL +E +E + +GL++ L AT
Sbjct: 323 FSNAIDCLSDEDKKL-PQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT 381
Query: 877 STLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
T A G+N+PAR V+F R G+DF I Y QM+GRAGR G+D +G +L+ E
Sbjct: 382 ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD-E 440
Query: 933 EVKKIMG--LLNESCPPLHS 950
++ +G LL S PL+S
Sbjct: 441 KMSPTIGKQLLKGSADPLNS 460
Score = 74 (31.1 bits), Expect = 2.7e-20, Sum P(4) = 2.7e-20
Identities = 31/141 (21%), Positives = 61/141 (43%)
Query: 523 SKLYPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579
+K YP+ ++ + + ++++ A TSAGK+ AE + L ++ + P
Sbjct: 32 AKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRV-IFTSPI 90
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR 639
++ +K + + +G G ++ S V T E S++ R E R
Sbjct: 91 KALSNQKYREMYEEFQDVGLMT-------GDVTINPTASCLVMTTEILRSMLYRGSEVMR 143
Query: 640 LSEIGIIVIDELHMVADQNRG 660
E+ ++ DE+H + D RG
Sbjct: 144 --EVAWVIFDEIHYMRDSERG 162
Score = 67 (28.6 bits), Expect = 2.7e-20, Sum P(4) = 2.7e-20
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 703 VGMSATMPNVAAVADWL-----QAA--LYETNFRPVPLEEYI 737
V +SAT+PN A+W+ Q +Y T++RP PL+ YI
Sbjct: 179 VFLSATIPNARQFAEWICHLHKQPCHVIY-TDYRPTPLQHYI 219
Score = 47 (21.6 bits), Expect = 2.7e-20, Sum P(4) = 2.7e-20
Identities = 11/58 (18%), Positives = 29/58 (50%)
Query: 2036 LHVAVSSCHQKGYVE-SLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKI 2092
L + C +K + +K KR L K + ++ K +++ + + +++D+I++
Sbjct: 714 LETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEM 771
>CGD|CAL0003794 [details] [associations]
symbol:orf19.1335 species:5476 "Candida albicans" [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0034459 "ATP-dependent
3'-5' RNA helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA] [GO:0034476
"U5 snRNA 3'-end processing" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0000467 "exonucleolytic trimming
to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003794 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581
EMBL:AACQ01000188 EMBL:AACQ01000187 KO:K12598 InterPro:IPR025696
Pfam:PF13234 RefSeq:XP_711657.1 RefSeq:XP_711675.1
RefSeq:XP_888948.1 STRING:Q59PN6 GeneID:3646717 GeneID:3646739
GeneID:3703907 KEGG:cal:CaO19.1335 KEGG:cal:CaO19.8915
KEGG:cal:CaO19_1335 Uniprot:Q59PN6
Length = 1106
Score = 215 (80.7 bits), Expect = 3.7e-20, Sum P(4) = 3.7e-20
Identities = 57/178 (32%), Positives = 93/178 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDIT-SAIDALRRCPAGLDPVLEE 840
V++F S++ CES A +SK N + I +AI+ L L P ++
Sbjct: 445 VIVFSFSKRDCESLALKMSKL----DFNTDEERNSLTQIFYNAIELLPEADREL-PQIKN 499
Query: 841 TLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR- 896
LP G+ HH+GL +E++E +++G ++VL AT T + G+N+PA+ V+F R
Sbjct: 500 ILPLLKRGIGIHHSGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK 559
Query: 897 ---IGRDFIDGTRYRQMAGRAGRTGIDTKG-ESMLICKPEEVKKIMGLLNESCPPLHS 950
+G ++ G Y QM+GRAGR G+D +G M+I + E + G++ L S
Sbjct: 560 WDGVGFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDS 617
Score = 119 (46.9 bits), Expect = 3.7e-20, Sum P(4) = 3.7e-20
Identities = 64/299 (21%), Positives = 127/299 (42%)
Query: 370 VKELSPLPIKHLDFLFEDKNLKGTKPGCGAADTSEAMMFRDGVVSEKGSVTHKSCQKIKF 429
+ + +PL IKH + L + +L A + +D V E +S +K +F
Sbjct: 28 IVKFNPLTIKHYNQLQKMDDLFDVFDEAPQAAPPKIEEIKDEVKPETTDNQTRSTKKRQF 87
Query: 430 KCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDE 489
++ T+ + S K H++ DI DS+ ++ V KP S+
Sbjct: 88 DNNNKTTTNSNNSSSSNNKK-----HKQAEDIKPVVFDSVEIETSREV--KP-SEGLSNS 139
Query: 490 AGTPSSSGM-LKDCLDLSSWLPSEICSI----YKKRGISKLYPWQVECLH---VDGVLQR 541
A + + + LK + +P + +K++ ++ YP+ ++ + + +
Sbjct: 140 ATVDADNKLKLKHQIRHQVAIPPSYPYVPIGEHKRKHEARTYPFTLDPFQDTAISCIDRN 199
Query: 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601
+++ A TSAGK+ VAE + + L ++ + P ++ +K L+ + +G
Sbjct: 200 ESVLVSAHTSAGKTVVAEYAIAQSLRDKQRV-IYTSPIKALSNQKFRELQAIFGDVGLMT 258
Query: 602 RSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
G ++ D V T E S++ R E R E+ +V DE+H + D++RG
Sbjct: 259 -------GDVTINPDAGCLVMTTEILRSMLYRGSEVMR--EVAWVVFDEVHYMRDKSRG 308
Score = 68 (29.0 bits), Expect = 3.7e-20, Sum P(4) = 3.7e-20
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 703 VGMSATMPNVAAVADWL-----QAA-LYETNFRPVPLEEYI 737
V +SAT+PN A+W+ Q + T+FRP PL+ Y+
Sbjct: 325 VFLSATIPNAMEFAEWIVKIHNQPCHVVYTDFRPTPLQHYL 365
Score = 39 (18.8 bits), Expect = 3.7e-20, Sum P(4) = 3.7e-20
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 1855 ICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDI 1907
I +L R+ + ++ L + Q A+ +E QC + + + +E I
Sbjct: 626 ILNLMRVEGISPEFMLEHSFFQFQKASSVPILEGKLAQCKQEFADITIEDEPI 678
>UNIPROTKB|E2RCI5 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 CTD:23517 EMBL:AAEX03001437
RefSeq:XP_849676.1 Ensembl:ENSCAFT00000010985 GeneID:607950
KEGG:cfa:607950 Uniprot:E2RCI5
Length = 1042
Score = 249 (92.7 bits), Expect = 4.9e-20, Sum P(4) = 4.9e-20
Identities = 69/200 (34%), Positives = 107/200 (53%)
Query: 761 GGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G K P ++ ++ +++ V+IF S+K CE+ A ++K F+ + E +
Sbjct: 367 GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKL--DFNTDEEKKMVEEV- 423
Query: 820 ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
++AID L L P +E LP G+ HH GL +E +E + +GL++ L AT
Sbjct: 424 FSNAIDCLSDEDKKL-PQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT 482
Query: 877 STLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
T A G+N+PAR V+F R G+DF I Y QM+GRAGR G+D +G +L+ E
Sbjct: 483 ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD-E 541
Query: 933 EVKKIMG--LLNESCPPLHS 950
++ +G LL S PL+S
Sbjct: 542 KMSPTIGKQLLKGSADPLNS 561
Score = 74 (31.1 bits), Expect = 4.9e-20, Sum P(4) = 4.9e-20
Identities = 31/141 (21%), Positives = 61/141 (43%)
Query: 523 SKLYPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579
+K YP+ ++ + + ++++ A TSAGK+ AE + L ++ + P
Sbjct: 133 AKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRV-IFTSPI 191
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR 639
++ +K + + +G G ++ S V T E S++ R E R
Sbjct: 192 KALSNQKYREMYEEFQDVGLMT-------GDVTINPTASCLVMTTEILRSMLYRGSEVMR 244
Query: 640 LSEIGIIVIDELHMVADQNRG 660
E+ ++ DE+H + D RG
Sbjct: 245 --EVAWVIFDEIHYMRDSERG 263
Score = 67 (28.6 bits), Expect = 4.9e-20, Sum P(4) = 4.9e-20
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 703 VGMSATMPNVAAVADWL-----QAA--LYETNFRPVPLEEYI 737
V +SAT+PN A+W+ Q +Y T++RP PL+ YI
Sbjct: 280 VFLSATIPNARQFAEWICHLHKQPCHVIY-TDYRPTPLQHYI 320
Score = 47 (21.6 bits), Expect = 4.9e-20, Sum P(4) = 4.9e-20
Identities = 11/58 (18%), Positives = 29/58 (50%)
Query: 2036 LHVAVSSCHQKGYVE-SLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKI 2092
L + C +K + +K KR L K + ++ K +++ + + +++D+I++
Sbjct: 815 LETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEM 872
>UNIPROTKB|P42285 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:D29641
EMBL:BX640789 EMBL:BC014669 EMBL:BC028604 EMBL:BC031779
EMBL:BC065258 EMBL:BC104996 EMBL:BC113509 IPI:IPI00647217
RefSeq:NP_056175.3 UniGene:Hs.274531 ProteinModelPortal:P42285
SMR:P42285 IntAct:P42285 STRING:P42285 PhosphoSite:P42285
DMDM:71153172 SWISS-2DPAGE:P42285 PaxDb:P42285 PeptideAtlas:P42285
PRIDE:P42285 DNASU:23517 Ensembl:ENST00000230640 GeneID:23517
KEGG:hsa:23517 UCSC:uc003jpy.4 CTD:23517 GeneCards:GC05P054605
HGNC:HGNC:18734 HPA:HPA037379 neXtProt:NX_P42285
PharmGKB:PA134901921 HOVERGEN:HBG104255 InParanoid:P42285
OrthoDB:EOG4D52WW PhylomeDB:P42285 ChiTaRS:SKIV2L2 GenomeRNAi:23517
NextBio:45957 ArrayExpress:P42285 Bgee:P42285 CleanEx:HS_SKIV2L2
Genevestigator:P42285 GermOnline:ENSG00000039123 Uniprot:P42285
Length = 1042
Score = 249 (92.7 bits), Expect = 4.9e-20, Sum P(4) = 4.9e-20
Identities = 69/200 (34%), Positives = 107/200 (53%)
Query: 761 GGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G K P ++ ++ +++ V+IF S+K CE+ A ++K F+ + E +
Sbjct: 367 GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKL--DFNTDEEKKMVEEV- 423
Query: 820 ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
++AID L L P +E LP G+ HH GL +E +E + +GL++ L AT
Sbjct: 424 FSNAIDCLSDEDKKL-PQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT 482
Query: 877 STLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
T A G+N+PAR V+F R G+DF I Y QM+GRAGR G+D +G +L+ E
Sbjct: 483 ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD-E 541
Query: 933 EVKKIMG--LLNESCPPLHS 950
++ +G LL S PL+S
Sbjct: 542 KMSPTIGKQLLKGSADPLNS 561
Score = 74 (31.1 bits), Expect = 4.9e-20, Sum P(4) = 4.9e-20
Identities = 31/141 (21%), Positives = 61/141 (43%)
Query: 523 SKLYPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579
+K YP+ ++ + + ++++ A TSAGK+ AE + L ++ + P
Sbjct: 133 AKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRV-IFTSPI 191
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR 639
++ +K + + +G G ++ S V T E S++ R E R
Sbjct: 192 KALSNQKYREMYEEFQDVGLMT-------GDVTINPTASCLVMTTEILRSMLYRGSEVMR 244
Query: 640 LSEIGIIVIDELHMVADQNRG 660
E+ ++ DE+H + D RG
Sbjct: 245 --EVAWVIFDEIHYMRDSERG 263
Score = 67 (28.6 bits), Expect = 4.9e-20, Sum P(4) = 4.9e-20
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 703 VGMSATMPNVAAVADWL-----QAA--LYETNFRPVPLEEYI 737
V +SAT+PN A+W+ Q +Y T++RP PL+ YI
Sbjct: 280 VFLSATIPNARQFAEWICHLHKQPCHVIY-TDYRPTPLQHYI 320
Score = 47 (21.6 bits), Expect = 4.9e-20, Sum P(4) = 4.9e-20
Identities = 11/58 (18%), Positives = 29/58 (50%)
Query: 2036 LHVAVSSCHQKGYVE-SLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKI 2092
L + C +K + +K KR L K + ++ K +++ + + +++D+I++
Sbjct: 815 LETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEM 872
>UNIPROTKB|F1SLL6 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:FP236391 EMBL:CU929534 Ensembl:ENSSSCT00000018417
Uniprot:F1SLL6
Length = 1046
Score = 249 (92.7 bits), Expect = 5.0e-20, Sum P(4) = 5.0e-20
Identities = 69/200 (34%), Positives = 107/200 (53%)
Query: 761 GGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G K P ++ ++ +++ V+IF S+K CE+ A ++K F+ + E +
Sbjct: 368 GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKL--DFNTDEEKKMVEEV- 424
Query: 820 ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
++AID L L P +E LP G+ HH GL +E +E + +GL++ L AT
Sbjct: 425 FSNAIDCLSDEDKKL-PQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT 483
Query: 877 STLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
T A G+N+PAR V+F R G+DF I Y QM+GRAGR G+D +G +L+ E
Sbjct: 484 ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD-E 542
Query: 933 EVKKIMG--LLNESCPPLHS 950
++ +G LL S PL+S
Sbjct: 543 KMSPTIGKQLLKGSADPLNS 562
Score = 74 (31.1 bits), Expect = 5.0e-20, Sum P(4) = 5.0e-20
Identities = 31/141 (21%), Positives = 61/141 (43%)
Query: 523 SKLYPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579
+K YP+ ++ + + ++++ A TSAGK+ AE + L ++ + P
Sbjct: 134 AKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRV-IFTSPI 192
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR 639
++ +K + + +G G ++ S V T E S++ R E R
Sbjct: 193 KALSNQKYREMYEEFQDVGLMT-------GDVTINPTASCLVMTTEILRSMLYRGSEVMR 245
Query: 640 LSEIGIIVIDELHMVADQNRG 660
E+ ++ DE+H + D RG
Sbjct: 246 --EVAWVIFDEIHYMRDSERG 264
Score = 67 (28.6 bits), Expect = 5.0e-20, Sum P(4) = 5.0e-20
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 703 VGMSATMPNVAAVADWL-----QAA--LYETNFRPVPLEEYI 737
V +SAT+PN A+W+ Q +Y T++RP PL+ YI
Sbjct: 281 VFLSATIPNARQFAEWICHLHKQPCHVIY-TDYRPTPLQHYI 321
Score = 47 (21.6 bits), Expect = 5.0e-20, Sum P(4) = 5.0e-20
Identities = 11/58 (18%), Positives = 29/58 (50%)
Query: 2036 LHVAVSSCHQKGYVE-SLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKI 2092
L + C +K + +K KR L K + ++ K +++ + + +++D+I++
Sbjct: 816 LETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEM 873
Score = 41 (19.5 bits), Expect = 2.0e-19, Sum P(4) = 2.0e-19
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 2049 VESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAAD 2088
++ LK RKR L ++ F + + + + + I + +AD
Sbjct: 849 MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISRWYSAD 888
>DICTYBASE|DDB_G0275633 [details] [associations]
symbol:DDB_G0275633 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
Length = 1128
Score = 227 (85.0 bits), Expect = 5.9e-20, Sum P(4) = 5.9e-20
Identities = 59/175 (33%), Positives = 93/175 (53%)
Query: 761 GGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G K P ++ +++ + V+IF S+K CE+ A +SK F+ + + E I
Sbjct: 440 GNKGPSDCYKIVKMIMERNYQPVIIFSFSKKECETYALQMSKL--DFNNDDEKNAVETI- 496
Query: 820 ITSAIDALRRCPAGLDPVLE--ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS 877
+AID+L L V+ L G+ HHAGL +E++E ++ G ++ L AT
Sbjct: 497 FNNAIDSLSESDKQLPAVINILPLLKRGIGIHHAGLLPILKEIIEILFQYGYIKALFATE 556
Query: 878 TLAAGVNLPARRVIFRQPRI----GRDFIDGTRYRQMAGRAGRTGIDTKGESMLI 928
T + G+N+PA+ VIF R G +I G Y QM+GRAGR G+D +G +L+
Sbjct: 557 TFSIGLNMPAKTVIFTSVRKFDGEGMRWISGGEYIQMSGRAGRRGLDERGIVILM 611
Score = 102 (41.0 bits), Expect = 5.9e-20, Sum P(4) = 5.9e-20
Identities = 61/290 (21%), Positives = 123/290 (42%)
Query: 387 DKNLK-GTKPGCGAADTSEAMMFRDGVVSEKGSVTHKSC-QKIKFKCHHDNTSRTEGISD 444
+K L KP GA + + D + GSV S ++I+ + + ++D
Sbjct: 61 NKTLNPNVKP-LGALPNNSKIESMDTFKNTVGSVDLMSLDEEIQRNKKQKGGNTKQAVAD 119
Query: 445 V----QEKDSVLI-VHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGML 499
+ ++ D+ L + E + + I N+I + ++ G +++G
Sbjct: 120 ISFNAKQSDTTLDKLRENVEKKEREELSMIEQQKQQNIIPE----NRTATGGYITAAGTS 175
Query: 500 KDCLDLSSWLPSEIC---SIYKK-RGI--SKLYPWQVECLHVDGV--LQRR-NLVYCAST 550
K C+ P E+ ++Y I ++ YP++++ + ++R +++ A T
Sbjct: 176 KSCIHEVLLPPGEVNDDPNLYNPPEPIKPARTYPFKLDPFQATSIACIERNESVLVSAHT 235
Query: 551 SAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGG 610
SAGK+ VAE + L G+ + P ++ +K L+ + +G G
Sbjct: 236 SAGKTVVAEYSIATAL-RDGQRVIYTSPIKALSNQKFRDLQETFQDVGLMT-------GD 287
Query: 611 GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
++ + S V T E S++ R E R E+ ++ DE+H + D+ RG
Sbjct: 288 ITINANASCLVMTTEILRSMLYRGSETMR--EVSWVIFDEIHYLRDKERG 335
Score = 69 (29.3 bits), Expect = 5.9e-20, Sum P(4) = 5.9e-20
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYE-------TNFRPVPLEEYI 737
++ V +SAT+PN A W+ A +++ T +RP+PL+ YI
Sbjct: 349 VKFVFLSATIPNAREFAAWI-AKIHKQPCHVVYTEYRPIPLQHYI 392
Score = 41 (19.5 bits), Expect = 5.9e-20, Sum P(4) = 5.9e-20
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 2069 EKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQ 2128
E +K +Q I G I+K + ++ I+ Y D + A LKGR +
Sbjct: 907 EITKEIKQLQKQIKSGDEV-ILKDDLRSMKRILTRLGYITDDGVVA----LKGRVACEIS 961
Query: 2129 VHDELVL 2135
DELV+
Sbjct: 962 AGDELVI 968
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 272 (100.8 bits), Expect = 5.9e-20, Sum P(4) = 5.9e-20
Identities = 98/291 (33%), Positives = 147/291 (50%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++++G+SAT+PN VA +L+ ++ +FRPVPLE+ VG I KK + R
Sbjct: 646 VRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTY-VG--ITEKKA-IKRF 701
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF-LKKFSINVHS 812
+ + K +H + + VL+F SRK TAR + L+K ++ +
Sbjct: 702 QIMNEIVYEKIMEHAGK---------NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFL 752
Query: 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872
+ +A +C L+ L++ LP G A HHAG+T +R +VE + ++V
Sbjct: 753 REGSASTEVLRTEA-EQCK-NLE--LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQV 808
Query: 873 LTATSTLAAGVNLPARRVIFR-----QPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGESM 926
L +T+TLA GVNLPA VI + P GR + QM GRAGR DTKGE +
Sbjct: 809 LVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGI 868
Query: 927 LICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAED 977
LI E++ + LLN+ P + S + M +A EVV G VQ A+D
Sbjct: 869 LITSHGELQYYLSLLNQQLP-IESQMVSKLPDMLNA--EVVLGN-VQNAKD 915
Score = 158 (60.7 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 75/295 (25%), Positives = 126/295 (42%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYET-NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IV +S+++ N VA WL + T NF P V ++ + ++ T
Sbjct: 1485 IRIVALSSSLSNAKDVAHWLGCSATSTFNFHP----NVRPVPLELHIQGFNISHTQTRLL 1540
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
++ K H + V++F SRK TA + L + ++ F+
Sbjct: 1541 SMA-KPVYHAITKHSPK----KPVIVFVPSRKQTRLTAIDI---LTTCAADIQRQ--RFL 1590
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
T D + D L+ETL +GV Y H GL+ ER +VE + G ++V+ A+ +
Sbjct: 1591 HCTEK-DLIPYLEKLSDSTLKETLLNGVGYLHEGLSPLERRLVEQLFSSGAIQVVVASRS 1649
Query: 879 LAAGVNLPARRVIFRQPRI--GRD--FIDGTRYR--QMAGRAGRTGIDTKGESMLICKPE 932
L G+N+ A VI + G+ ++D Y QM G A R D +G +++C+
Sbjct: 1650 LCWGLNVAAHLVIIMDTQYYNGKTHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1709
Query: 933 EVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
+ L E P + S L + H E+V I + +D Y+ T L
Sbjct: 1710 KKDFFKKFLYEPLP-VESHLDHCMHD--HFNAEIVTKTI-ENKQDAVDYLTWTFL 1760
Score = 90 (36.7 bits), Expect = 5.9e-20, Sum P(4) = 5.9e-20
Identities = 36/132 (27%), Positives = 60/132 (45%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL---------ISTGKMALL-VLPYVSICAEKAEHLEV 592
NL+ CA T AGK+ VA + MLR + I+ ++ + P S+ E
Sbjct: 498 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 557
Query: 593 LLEPLGRHVRSYYGNQGGGSLPKD----TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVI 648
L G V G+ L K+ T + VCT EK + + + E + ++++
Sbjct: 558 RLATYGITVAELTGDH---QLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLVIL 614
Query: 649 DELHMVADQNRG 660
DE+H++ D +RG
Sbjct: 615 DEIHLLHD-DRG 625
Score = 46 (21.3 bits), Expect = 5.9e-20, Sum P(4) = 5.9e-20
Identities = 14/65 (21%), Positives = 33/65 (50%)
Query: 2127 LQVHDELVLEVDPSVIKEAVSLVQKCME--SAALLLVPLLVKIQVGSTWGSLEPFQADNY 2184
+Q+ EL + + ++ +A+ L+Q C++ S+ L P L +++ + + D+Y
Sbjct: 1902 MQLSAELQSDTE-EILSKAIRLIQACVDVLSSNGWLSPALAAMELAQM-ATQAMWSKDSY 1959
Query: 2185 TNVVP 2189
+P
Sbjct: 1960 LKQLP 1964
Score = 43 (20.2 bits), Expect = 5.9e-20, Sum P(4) = 5.9e-20
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 958 GMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWL 1007
G +LEV+ + + I R +R L+S+ + +A+D WL
Sbjct: 1461 GENGPVLEVICSRMRYISSQIERPIRIVALSSS------LSNAKDVAHWL 1504
Score = 38 (18.4 bits), Expect = 3.8e-19, Sum P(4) = 3.8e-19
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 1106 LMRMAHGAPMRISSKLRDSTKGLHGK 1131
L+ AH + M++S++L+ T+ + K
Sbjct: 1893 LLLQAHLSRMQLSAELQSDTEEILSK 1918
Score = 38 (18.4 bits), Expect = 0.00080, Sum P(3) = 0.00080
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 593 LLEPLGRHVRSYYGNQGGGSL 613
+L+ LGR R Y +G G L
Sbjct: 849 ILQMLGRAGRPQYDTKGEGIL 869
>WB|WBGene00012896 [details] [associations]
symbol:snrp-200 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 251 (93.4 bits), Expect = 6.0e-20, Sum P(5) = 6.0e-20
Identities = 91/290 (31%), Positives = 144/290 (49%)
Query: 701 QIVGMSATMPNVAAVADWLQAA-----LYETNFRPVPLEEYIKVGNAIYSKKMDVVRTIL 755
++VG+SAT+PN VA +L+ ++ ++RPVPLE+ +G ++K + R
Sbjct: 641 RLVGLSATLPNYQDVATFLRVKPEHLHFFDNSYRPVPLEQQY-IG---VTEKKALKR--F 694
Query: 756 TAANLGGKDPDHIVELCDEVVQE-GHS-VLIFCSSRKGCESTARHV-SKFLKKFSINVHS 812
A N +V D++++ G S VL+F SRK TA+ + L+K +++
Sbjct: 695 QAMN-------EVVY--DKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFM 745
Query: 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872
+ T + LD L++ LP G A HHAG+ +R +VE + ++V
Sbjct: 746 REGSAS--TEILRTEAEQAKNLD--LKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQV 801
Query: 873 LTATSTLAAGVNLPARRVIFR-----QPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGESM 926
L +T+TLA GVNLPA VI + P GR + QM GRAGR D +GE +
Sbjct: 802 LFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGI 861
Query: 927 LICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAE 976
LI E++ + L+N+ P + S + M +A EVV G + +E
Sbjct: 862 LITNHSELQYYLSLMNQQLP-VESQMVSRLTDMLNA--EVVLGTVSSVSE 908
Score = 105 (42.0 bits), Expect = 6.0e-20, Sum P(5) = 6.0e-20
Identities = 40/137 (29%), Positives = 62/137 (45%)
Query: 536 DGVLQ-RRNLVYCASTSAGKSFVAEILMLRR----LISTGKMAL------LVLPYVSICA 584
D L+ + +L+ CA T AGK+ VA + ML+ L G + L + P S+
Sbjct: 484 DSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQ 543
Query: 585 EKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEI 643
E L P G V G+ Q T V VCT EK + + + E +
Sbjct: 544 EMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMV 603
Query: 644 GIIVIDELHMVADQNRG 660
+++IDE+H++ D +RG
Sbjct: 604 RLLIIDEIHLLHD-DRG 619
Score = 65 (27.9 bits), Expect = 6.0e-20, Sum P(5) = 6.0e-20
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 1928 SQENWILLAADYSQ----IELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSV 1983
S EN I+ A + S EL ++ HF P + P D+ T + A W R E ++
Sbjct: 1336 SNENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEPAI 1395
Query: 1984 G 1984
G
Sbjct: 1396 G 1396
Score = 41 (19.5 bits), Expect = 6.0e-20, Sum P(5) = 6.0e-20
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 1542 PVYYVNLPKDLW 1553
P+YYV + D W
Sbjct: 1257 PLYYVRIVSDRW 1268
Score = 38 (18.4 bits), Expect = 6.0e-20, Sum P(5) = 6.0e-20
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 40 EVSPSAKGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLE-----IDKYSKDEKNQAL 94
E S +G +Y + DGH ++ +R + R++ + KY KD L
Sbjct: 222 EESEEEEGVDTDYTATLKGDGHLTEDEQKARGILHPRDIDAHWIQRSLAKYFKDP----L 277
Query: 95 LSDQAQPQ 102
++ Q Q +
Sbjct: 278 IAQQKQTE 285
Score = 38 (18.4 bits), Expect = 5.7e-18, Sum P(4) = 5.7e-18
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 1914 VDHCK-INARDFFIPSQENWILLAADYSQIELRLMAHFSKDP 1954
V+ C I+ F S E +L D ++EL+ MA + P
Sbjct: 999 VETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPIP 1040
Score = 37 (18.1 bits), Expect = 7.2e-18, Sum P(4) = 7.2e-18
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 1091 LDQSVGNQVGVSEPYLMRMAH-GAPMRISSKLRDST 1125
L Q + + +EPYL ++ H A + +K ++ T
Sbjct: 1944 LSQMLTQAMYSNEPYLKQLPHCSAALLERAKAKEVT 1979
>UNIPROTKB|Q9U2G0 [details] [associations]
symbol:Y46G5A.4 "Putative U5 small nuclear
ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 251 (93.4 bits), Expect = 6.0e-20, Sum P(5) = 6.0e-20
Identities = 91/290 (31%), Positives = 144/290 (49%)
Query: 701 QIVGMSATMPNVAAVADWLQAA-----LYETNFRPVPLEEYIKVGNAIYSKKMDVVRTIL 755
++VG+SAT+PN VA +L+ ++ ++RPVPLE+ +G ++K + R
Sbjct: 641 RLVGLSATLPNYQDVATFLRVKPEHLHFFDNSYRPVPLEQQY-IG---VTEKKALKR--F 694
Query: 756 TAANLGGKDPDHIVELCDEVVQE-GHS-VLIFCSSRKGCESTARHV-SKFLKKFSINVHS 812
A N +V D++++ G S VL+F SRK TA+ + L+K +++
Sbjct: 695 QAMN-------EVVY--DKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFM 745
Query: 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872
+ T + LD L++ LP G A HHAG+ +R +VE + ++V
Sbjct: 746 REGSAS--TEILRTEAEQAKNLD--LKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQV 801
Query: 873 LTATSTLAAGVNLPARRVIFR-----QPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGESM 926
L +T+TLA GVNLPA VI + P GR + QM GRAGR D +GE +
Sbjct: 802 LFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGI 861
Query: 927 LICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAE 976
LI E++ + L+N+ P + S + M +A EVV G + +E
Sbjct: 862 LITNHSELQYYLSLMNQQLP-VESQMVSRLTDMLNA--EVVLGTVSSVSE 908
Score = 105 (42.0 bits), Expect = 6.0e-20, Sum P(5) = 6.0e-20
Identities = 40/137 (29%), Positives = 62/137 (45%)
Query: 536 DGVLQ-RRNLVYCASTSAGKSFVAEILMLRR----LISTGKMAL------LVLPYVSICA 584
D L+ + +L+ CA T AGK+ VA + ML+ L G + L + P S+
Sbjct: 484 DSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQ 543
Query: 585 EKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEI 643
E L P G V G+ Q T V VCT EK + + + E +
Sbjct: 544 EMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMV 603
Query: 644 GIIVIDELHMVADQNRG 660
+++IDE+H++ D +RG
Sbjct: 604 RLLIIDEIHLLHD-DRG 619
Score = 65 (27.9 bits), Expect = 6.0e-20, Sum P(5) = 6.0e-20
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 1928 SQENWILLAADYSQ----IELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSV 1983
S EN I+ A + S EL ++ HF P + P D+ T + A W R E ++
Sbjct: 1336 SNENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEPAI 1395
Query: 1984 G 1984
G
Sbjct: 1396 G 1396
Score = 41 (19.5 bits), Expect = 6.0e-20, Sum P(5) = 6.0e-20
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 1542 PVYYVNLPKDLW 1553
P+YYV + D W
Sbjct: 1257 PLYYVRIVSDRW 1268
Score = 38 (18.4 bits), Expect = 6.0e-20, Sum P(5) = 6.0e-20
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 40 EVSPSAKGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLE-----IDKYSKDEKNQAL 94
E S +G +Y + DGH ++ +R + R++ + KY KD L
Sbjct: 222 EESEEEEGVDTDYTATLKGDGHLTEDEQKARGILHPRDIDAHWIQRSLAKYFKDP----L 277
Query: 95 LSDQAQPQ 102
++ Q Q +
Sbjct: 278 IAQQKQTE 285
Score = 38 (18.4 bits), Expect = 5.7e-18, Sum P(4) = 5.7e-18
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 1914 VDHCK-INARDFFIPSQENWILLAADYSQIELRLMAHFSKDP 1954
V+ C I+ F S E +L D ++EL+ MA + P
Sbjct: 999 VETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPIP 1040
Score = 37 (18.1 bits), Expect = 7.2e-18, Sum P(4) = 7.2e-18
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 1091 LDQSVGNQVGVSEPYLMRMAH-GAPMRISSKLRDST 1125
L Q + + +EPYL ++ H A + +K ++ T
Sbjct: 1944 LSQMLTQAMYSNEPYLKQLPHCSAALLERAKAKEVT 1979
>MGI|MGI:1919448 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000460 "maturation of 5.8S
rRNA" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919448 GO:GO:0005524
GO:GO:0005730 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 CTD:23517
HOVERGEN:HBG104255 OrthoDB:EOG4D52WW ChiTaRS:SKIV2L2 EMBL:AK012158
EMBL:BC029230 IPI:IPI00113134 RefSeq:NP_082427.1 UniGene:Mm.291029
ProteinModelPortal:Q9CZU3 SMR:Q9CZU3 IntAct:Q9CZU3 STRING:Q9CZU3
PhosphoSite:Q9CZU3 PaxDb:Q9CZU3 PRIDE:Q9CZU3
Ensembl:ENSMUST00000022281 GeneID:72198 KEGG:mmu:72198
UCSC:uc007rws.1 InParanoid:Q9CZU3 NextBio:335677 Bgee:Q9CZU3
Genevestigator:Q9CZU3 GermOnline:ENSMUSG00000016018 Uniprot:Q9CZU3
Length = 1040
Score = 248 (92.4 bits), Expect = 6.2e-20, Sum P(4) = 6.2e-20
Identities = 69/200 (34%), Positives = 106/200 (53%)
Query: 761 GGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G K P ++ ++ +++ V+IF S+K CE+ A ++K F+ + E +
Sbjct: 365 GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKL--DFNTDEEKKMVEEV- 421
Query: 820 ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
+AID L L P +E LP G+ HH GL +E +E + +GL++ L AT
Sbjct: 422 FNNAIDCLSDEDKKL-PQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT 480
Query: 877 STLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
T A G+N+PAR V+F R G+DF I Y QM+GRAGR G+D +G +L+ E
Sbjct: 481 ETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD-E 539
Query: 933 EVKKIMG--LLNESCPPLHS 950
++ +G LL S PL+S
Sbjct: 540 KMSPTIGKQLLKGSADPLNS 559
Score = 74 (31.1 bits), Expect = 6.2e-20, Sum P(4) = 6.2e-20
Identities = 31/141 (21%), Positives = 61/141 (43%)
Query: 523 SKLYPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579
+K YP+ ++ + + ++++ A TSAGK+ AE + L ++ + P
Sbjct: 131 AKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRV-IFTSPI 189
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR 639
++ +K + + +G G ++ S V T E S++ R E R
Sbjct: 190 KALSNQKYREMYEEFQDVGLMT-------GDVTINPTASCLVMTTEILRSMLYRGSEVMR 242
Query: 640 LSEIGIIVIDELHMVADQNRG 660
E+ ++ DE+H + D RG
Sbjct: 243 --EVAWVIFDEIHYMRDSERG 261
Score = 67 (28.6 bits), Expect = 6.2e-20, Sum P(4) = 6.2e-20
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 703 VGMSATMPNVAAVADWL-----QAA--LYETNFRPVPLEEYI 737
V +SAT+PN A+W+ Q +Y T++RP PL+ YI
Sbjct: 278 VFLSATIPNARQFAEWICHLHKQPCHVIY-TDYRPTPLQHYI 318
Score = 47 (21.6 bits), Expect = 6.2e-20, Sum P(4) = 6.2e-20
Identities = 11/58 (18%), Positives = 29/58 (50%)
Query: 2036 LHVAVSSCHQKGYVE-SLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKI 2092
L + C +K + +K KR L K + ++ K +++ + + +++D+I++
Sbjct: 813 LETVYTLCERKAQIALDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEM 870
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 271 (100.5 bits), Expect = 9.6e-20, Sum P(4) = 9.6e-20
Identities = 97/291 (33%), Positives = 147/291 (50%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++++G+SAT+PN VA +L+ ++ +FRPVPLE+ VG I KK + R
Sbjct: 646 VRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTY-VG--ITEKKA-IKRF 701
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF-LKKFSINVHS 812
+ + K +H + + VL+F SRK TAR + L+K ++ +
Sbjct: 702 QIMNEIVYEKIMEHAGK---------NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFL 752
Query: 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872
+ +A +C L+ L++ LP G A HHAG+T +R +VE + ++V
Sbjct: 753 REGSASTEVLRTEA-EQCK-NLE--LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQV 808
Query: 873 LTATSTLAAGVNLPARRVIFR-----QPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGESM 926
L +T+TLA GVNLPA VI + P GR + QM GRAGR DTKGE +
Sbjct: 809 LVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGI 868
Query: 927 LICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAED 977
LI E++ + LLN+ P + S + M +A E+V G VQ A+D
Sbjct: 869 LITSHGELQYYLSLLNQQLP-IESQMVSKLPDMLNA--EIVLGN-VQNAKD 915
Score = 158 (60.7 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 75/295 (25%), Positives = 126/295 (42%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYET-NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IV +S+++ N VA WL + T NF P V ++ + ++ T
Sbjct: 1488 IRIVALSSSLSNAKDVAHWLGCSATSTFNFHP----NVRPVPLELHIQGFNISHTQTRLL 1543
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
++ K H + V++F SRK TA + L + ++ F+
Sbjct: 1544 SMA-KPVYHAITKHSPK----KPVIVFVPSRKQTRLTAIDI---LTTCAADIQRQ--RFL 1593
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
T D + D L+ETL +GV Y H GL+ ER +VE + G ++V+ A+ +
Sbjct: 1594 HCTEK-DLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRS 1652
Query: 879 LAAGVNLPARRVIFRQPRI--GR--DFIDGTRYR--QMAGRAGRTGIDTKGESMLICKPE 932
L G+N+ A VI + G+ ++D Y QM G A R D +G +++C+
Sbjct: 1653 LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1712
Query: 933 EVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
+ L E P + S L + H E+V I + +D Y+ T L
Sbjct: 1713 KKDFFKKFLYEPLP-VESHLDHCMHD--HFNAEIVTKTI-ENKQDAVDYLTWTFL 1763
Score = 92 (37.4 bits), Expect = 9.6e-20, Sum P(4) = 9.6e-20
Identities = 38/132 (28%), Positives = 60/132 (45%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL---------ISTGKMALL-VLPYVSICAEKAEHLEV 592
NL+ CA T AGK+ VA + MLR + I+ ++ + P S+ E
Sbjct: 498 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 557
Query: 593 LLEPLGRHVRSYYGNQGGGSLPKD----TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVI 648
L G V G+ L K+ T + VCT EK + + + E + +IV+
Sbjct: 558 RLATYGITVAELTGDH---QLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIVL 614
Query: 649 DELHMVADQNRG 660
DE+H++ D +RG
Sbjct: 615 DEIHLLHD-DRG 625
Score = 43 (20.2 bits), Expect = 9.6e-20, Sum P(4) = 9.6e-20
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 958 GMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWL 1007
G +LEV+ + + I R +R L+S+ + +A+D WL
Sbjct: 1464 GENGPVLEVICSRMRYISSQIERPIRIVALSSS------LSNAKDVAHWL 1507
Score = 43 (20.2 bits), Expect = 9.6e-20, Sum P(4) = 9.6e-20
Identities = 14/65 (21%), Positives = 33/65 (50%)
Query: 2127 LQVHDELVLEVDPSVIKEAVSLVQKCME--SAALLLVPLLVKIQVGSTWGSLEPFQADNY 2184
+Q+ EL + + ++ +A+ L+Q C++ S+ L P L +++ + + D+Y
Sbjct: 1905 MQLSAELQSDTE-EILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMV-TQAMWSKDSY 1962
Query: 2185 TNVVP 2189
+P
Sbjct: 1963 LKQLP 1967
Score = 38 (18.4 bits), Expect = 3.1e-19, Sum P(4) = 3.1e-19
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 1106 LMRMAHGAPMRISSKLRDSTKGLHGK 1131
L+ AH + M++S++L+ T+ + K
Sbjct: 1896 LLLQAHLSRMQLSAELQSDTEEILSK 1921
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 271 (100.5 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 97/291 (33%), Positives = 147/291 (50%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++++G+SAT+PN VA +L+ ++ +FRPVPLE+ VG I KK + R
Sbjct: 646 VRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTY-VG--ITEKKA-IKRF 701
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF-LKKFSINVHS 812
+ + K +H + + VL+F SRK TAR + L+K ++ +
Sbjct: 702 QIMNEIVYEKIMEHAGK---------NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFL 752
Query: 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872
+ +A +C L+ L++ LP G A HHAG+T +R +VE + ++V
Sbjct: 753 REGSASTEVLRTEA-EQCK-NLE--LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQV 808
Query: 873 LTATSTLAAGVNLPARRVIFR-----QPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGESM 926
L +T+TLA GVNLPA VI + P GR + QM GRAGR DTKGE +
Sbjct: 809 LVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGI 868
Query: 927 LICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAED 977
LI E++ + LLN+ P + S + M +A E+V G VQ A+D
Sbjct: 869 LITSHGELQYYLSLLNQQLP-IESQMVSKLPDMLNA--EIVLGN-VQNAKD 915
Score = 158 (60.7 bits), Expect = 8.7e-09, Sum P(3) = 8.7e-09
Identities = 75/295 (25%), Positives = 126/295 (42%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYET-NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IV +S+++ N VA WL + T NF P V ++ + ++ T
Sbjct: 1485 IRIVALSSSLSNAKDVAHWLGCSATSTFNFHP----NVRPVPLELHIQGFNISHTQTRLL 1540
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
++ K H + V++F SRK TA + L + ++ F+
Sbjct: 1541 SMA-KPVYHAITKHSPK----KPVIVFVPSRKQTRLTAIDI---LTTCAADIQRQ--RFL 1590
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
T D + D L+ETL +GV Y H GL+ ER +VE + G ++V+ A+ +
Sbjct: 1591 HCTEK-DLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRS 1649
Query: 879 LAAGVNLPARRVIFRQPRI--GR--DFIDGTRYR--QMAGRAGRTGIDTKGESMLICKPE 932
L G+N+ A VI + G+ ++D Y QM G A R D +G +++C+
Sbjct: 1650 LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1709
Query: 933 EVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
+ L E P + S L + H E+V I + +D Y+ T L
Sbjct: 1710 KKDFFKKFLYEPLP-VESHLDHCMHD--HFNAEIVTKTI-ENKQDAVDYLTWTFL 1760
Score = 91 (37.1 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 37/132 (28%), Positives = 60/132 (45%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL---------ISTGKMALL-VLPYVSICAEKAEHLEV 592
NL+ CA T AGK+ VA + MLR + I+ ++ + P S+ E
Sbjct: 498 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 557
Query: 593 LLEPLGRHVRSYYGNQGGGSLPKD----TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVI 648
L G V G+ L K+ T + VCT EK + + + E + +I++
Sbjct: 558 RLATYGITVAELTGDH---QLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIIL 614
Query: 649 DELHMVADQNRG 660
DE+H++ D +RG
Sbjct: 615 DEIHLLHD-DRG 625
Score = 43 (20.2 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 958 GMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWL 1007
G +LEV+ + + I R +R L+S+ + +A+D WL
Sbjct: 1461 GENGPVLEVICSRMRYISSQIERPIRIVALSSS------LSNAKDVAHWL 1504
Score = 43 (20.2 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 14/65 (21%), Positives = 33/65 (50%)
Query: 2127 LQVHDELVLEVDPSVIKEAVSLVQKCME--SAALLLVPLLVKIQVGSTWGSLEPFQADNY 2184
+Q+ EL + + ++ +A+ L+Q C++ S+ L P L +++ + + D+Y
Sbjct: 1902 MQLSAELQSDTE-EILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMV-TQAMWSKDSY 1959
Query: 2185 TNVVP 2189
+P
Sbjct: 1960 LKQLP 1964
Score = 38 (18.4 bits), Expect = 3.8e-19, Sum P(4) = 3.8e-19
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 1106 LMRMAHGAPMRISSKLRDSTKGLHGK 1131
L+ AH + M++S++L+ T+ + K
Sbjct: 1893 LLLQAHLSRMQLSAELQSDTEEILSK 1918
>ZFIN|ZDB-GENE-081105-64 [details] [associations]
symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
HOVERGEN:HBG051896 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
Length = 2134
Score = 265 (98.3 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 98/301 (32%), Positives = 150/301 (49%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++++G+SAT+PN VA L+ ++ +FRPVPLE+ VG I KK + R
Sbjct: 643 VRLIGLSATLPNYEDVATCLRVDPSKGLFYFDNSFRPVPLEQTY-VG--ITEKKA-IKRF 698
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF-LKKFSINVHS 812
+ + K +H + + VL+F SRK TAR + L+K ++ +
Sbjct: 699 QIMNEIVYEKIMEHAGK---------NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFL 749
Query: 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872
+ +A +C L+ L++ LP G A HHAG+T +R +VE + ++V
Sbjct: 750 REGSASTEVLRTEA-EQCK-NLE--LKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQV 805
Query: 873 LTATSTLAAGVNLPARRVIFR-----QPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGESM 926
L +T+TLA GVNLPA VI + P GR + QM GRAGR D+KGE +
Sbjct: 806 LVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDSKGEGI 865
Query: 927 LICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTL 986
LI E++ + LLN+ P + S + M +A E+V G VQ A+D ++ T
Sbjct: 866 LITSHGELQYYLSLLNQQLP-IESQMVGKLADMLNA--EIVLGN-VQNAKDAVNWLGYTY 921
Query: 987 L 987
L
Sbjct: 922 L 922
Score = 166 (63.5 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 76/301 (25%), Positives = 127/301 (42%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYET-NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IV +S+++ N VA WL + T NF P V ++ + +V T
Sbjct: 1481 IRIVALSSSLSNAKDVAHWLGCSTTATFNFHP----NVRPVPLELHIQGFNVSHTQTRLL 1536
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN---VHSSDS 815
++ K H + VL+F SR+ TA + F + +HS++
Sbjct: 1537 SMA-KPVYHAIMKHSP----SKPVLVFVPSRRQTRLTAIDILTFCAADVVPQRFLHSTEK 1591
Query: 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTA 875
+ + + D L+ETL +GV Y H GL+ ER +VE + G ++V+ A
Sbjct: 1592 DLVPFMENLS---------DVTLKETLSNGVGYLHEGLSPTERRIVEHLFTSGAIQVVVA 1642
Query: 876 TSTLAAGVNLPARRVIFRQPRI--GR--DFIDGTRYR--QMAGRAGRTGIDTKGESMLIC 929
+ +L G N+ A VI + G+ ++D Y QM G+A R D +G +++C
Sbjct: 1643 SRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIYDVLQMVGKANRPLQDDEGRCVIMC 1702
Query: 930 KPEEVKKIMGLLNESCPP---LHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTL 986
+ + L E P L CL + N E+V V+ +D Y+ T
Sbjct: 1703 QGSKKDFFKKFLYEPLPVESHLDHCLHDHFNA------EIVTK-TVENKQDAVDYLTWTF 1755
Query: 987 L 987
L
Sbjct: 1756 L 1756
Score = 97 (39.2 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 38/129 (29%), Positives = 64/129 (49%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRLISTGKM--ALLVLPYVSI-CAEKAEHLEVLLEPLGR 599
NL+ CA T AGK+ VA + MLR + M + V + I A ++ ++ G+
Sbjct: 495 NLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVADFKIIYIAPMRSLVQEMVGSFGK 554
Query: 600 HVRSY--YGNQ--GGGSLPKD----TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDEL 651
+ SY ++ G L K+ T + VCT EK + + + E + +I+IDE+
Sbjct: 555 RLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGERTYTQLVRLIIIDEI 614
Query: 652 HMVADQNRG 660
H++ D +RG
Sbjct: 615 HLLHD-DRG 622
Score = 44 (20.5 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 2127 LQVHDELVLEVDPSVIKEAVSLVQKCME--SAALLLVPLLVKIQVGSTWGSLEPFQADNY 2184
+Q+ EL + + ++ +AV L+Q C++ S+ L P L +++ + + D+Y
Sbjct: 1898 MQLSAELQSDTE-EILSKAVRLIQACVDVLSSNGWLSPALAAMELAQMV-TQAMWSKDSY 1955
Query: 2185 TNVVP 2189
+P
Sbjct: 1956 LRQLP 1960
Score = 42 (19.8 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 963 ILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWL 1007
+LEV+ + + I R +R L+S+ + +A+D WL
Sbjct: 1462 VLEVICSRMRYISSQIERPIRIVALSSS------LSNAKDVAHWL 1500
Score = 39 (18.8 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 593 LLEPLGRHVRSYYGNQGGGSL 613
+L+ LGR R Y ++G G L
Sbjct: 846 ILQMLGRAGRPQYDSKGEGIL 866
Score = 38 (18.4 bits), Expect = 5.0e-19, Sum P(4) = 5.0e-19
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 1106 LMRMAHGAPMRISSKLRDSTKGLHGK 1131
L+ AH + M++S++L+ T+ + K
Sbjct: 1889 LLLQAHLSRMQLSAELQSDTEEILSK 1914
Score = 38 (18.4 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 265 SIVKTYVRETPKSTCGNSIFSPGEAFW 291
S +K + TP + I EAFW
Sbjct: 1193 STLKVELTITPDFQWDDKIHGSSEAFW 1219
>ZFIN|ZDB-GENE-040426-2854 [details] [associations]
symbol:skiv2l2 "superkiller viralicidic activity
2-like 2" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0031101 "fin regeneration"
evidence=IMP] [GO:0051781 "positive regulation of cell division"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2854 GO:GO:0005524 GO:GO:0051781 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031101
GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 CTD:23517 HOVERGEN:HBG104255
OrthoDB:EOG4D52WW EMBL:BC061456 IPI:IPI00481753 RefSeq:NP_999933.1
UniGene:Dr.75715 ProteinModelPortal:Q6P7X6 STRING:Q6P7X6
PRIDE:Q6P7X6 GeneID:406795 KEGG:dre:406795 NextBio:20818305
Bgee:Q6P7X6 Uniprot:Q6P7X6
Length = 1034
Score = 243 (90.6 bits), Expect = 1.3e-19, Sum P(4) = 1.3e-19
Identities = 69/200 (34%), Positives = 104/200 (52%)
Query: 761 GGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G K P ++ ++ +++ V+IF S+K CE+ A VSK F+ + E +
Sbjct: 360 GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKL--DFNTDEEKKLVEEV- 416
Query: 820 ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
+A D L L P +E LP G+ HH GL +E +E + +GL++ L AT
Sbjct: 417 FNNATDCLSDEDKKL-PQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFAT 475
Query: 877 STLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
T A G+N+PAR V+F R G+DF I Y QM+GRAGR G+D +G ++ E
Sbjct: 476 ETFAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERG-IVIFMVDE 534
Query: 933 EVKKIMG--LLNESCPPLHS 950
++ +G LL S PL+S
Sbjct: 535 KMSPAVGKQLLKGSADPLNS 554
Score = 77 (32.2 bits), Expect = 1.3e-19, Sum P(4) = 1.3e-19
Identities = 32/141 (22%), Positives = 62/141 (43%)
Query: 523 SKLYPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579
+K YP+ ++ + +L ++++ A TSAGK+ AE + L ++ + P
Sbjct: 121 AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRV-IFTSPI 179
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR 639
++ +K + + +G G ++ S V T E S++ R E R
Sbjct: 180 KALSNQKYREMYEEFQDVGLMT-------GDVTINPTASCLVMTTEILRSMLYRGSEVMR 232
Query: 640 LSEIGIIVIDELHMVADQNRG 660
E+ ++ DE+H + D RG
Sbjct: 233 --EVAWVIFDEIHYMRDSERG 251
Score = 67 (28.6 bits), Expect = 1.3e-19, Sum P(4) = 1.3e-19
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 703 VGMSATMPNVAAVADWL-----QAA-LYETNFRPVPLEEYI 737
V +SAT+PN A+W+ Q + T++RP PL+ YI
Sbjct: 268 VFLSATVPNARQFAEWICHLHKQPCHVVYTDYRPTPLQHYI 308
Score = 46 (21.3 bits), Expect = 1.3e-19, Sum P(4) = 1.3e-19
Identities = 11/58 (18%), Positives = 28/58 (48%)
Query: 2036 LHVAVSSCHQKGYVES-LKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKI 2092
L C +K + +K KR L K + ++ K +++ + + +++D+I++
Sbjct: 807 LEAVYKLCEKKALIAGDIKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEM 864
>UNIPROTKB|F1MJX4 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:DAAA02050346 EMBL:DAAA02050343 EMBL:DAAA02050344
EMBL:DAAA02050345 IPI:IPI00839454 Ensembl:ENSBTAT00000047363
Uniprot:F1MJX4
Length = 937
Score = 249 (92.7 bits), Expect = 1.3e-19, Sum P(5) = 1.3e-19
Identities = 69/200 (34%), Positives = 107/200 (53%)
Query: 761 GGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G K P ++ ++ +++ V+IF S+K CE+ A ++K F+ + E +
Sbjct: 365 GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKL--DFNTDEEKKMVEEV- 421
Query: 820 ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
++AID L L P +E LP G+ HH GL +E +E + +GL++ L AT
Sbjct: 422 FSNAIDCLSDEDKKL-PQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT 480
Query: 877 STLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
T A G+N+PAR V+F R G+DF I Y QM+GRAGR G+D +G +L+ E
Sbjct: 481 ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD-E 539
Query: 933 EVKKIMG--LLNESCPPLHS 950
++ +G LL S PL+S
Sbjct: 540 KMSPTIGKQLLKGSADPLNS 559
Score = 74 (31.1 bits), Expect = 1.3e-19, Sum P(5) = 1.3e-19
Identities = 31/141 (21%), Positives = 61/141 (43%)
Query: 523 SKLYPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579
+K YP+ ++ + + ++++ A TSAGK+ AE + L ++ + P
Sbjct: 131 AKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRV-IFTSPI 189
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR 639
++ +K + + +G G ++ S V T E S++ R E R
Sbjct: 190 KALSNQKYREMYEEFQDVGLMT-------GDVTINPTASCLVMTTEILRSMLYRGSEVMR 242
Query: 640 LSEIGIIVIDELHMVADQNRG 660
E+ ++ DE+H + D RG
Sbjct: 243 --EVAWVIFDEIHYMRDSERG 261
Score = 67 (28.6 bits), Expect = 1.3e-19, Sum P(5) = 1.3e-19
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 703 VGMSATMPNVAAVADWL-----QAA--LYETNFRPVPLEEYI 737
V +SAT+PN A+W+ Q +Y T++RP PL+ YI
Sbjct: 278 VFLSATIPNARQFAEWICHLHKQPCHVIY-TDYRPTPLQHYI 318
Score = 47 (21.6 bits), Expect = 1.3e-19, Sum P(5) = 1.3e-19
Identities = 11/58 (18%), Positives = 29/58 (50%)
Query: 2036 LHVAVSSCHQKGYVE-SLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKI 2092
L + C +K + +K KR L K + ++ K +++ + + +++D+I++
Sbjct: 813 LETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEM 870
Score = 41 (19.5 bits), Expect = 5.3e-19, Sum P(5) = 5.3e-19
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 2049 VESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAAD 2088
++ LK RKR L ++ F + + + + + I + +AD
Sbjct: 846 MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISRWYSAD 885
Score = 37 (18.1 bits), Expect = 1.3e-19, Sum P(5) = 1.3e-19
Identities = 14/53 (26%), Positives = 19/53 (35%)
Query: 468 SITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKR 520
S+ D T EK G P S+ C D L SE ++ K +
Sbjct: 11 SVFEDDSTTAPGAKKDKEKGKWKGPPGSAEKAGRCFD--GKLQSESTNVGKNK 61
>UNIPROTKB|F1MAH7 [details] [associations]
symbol:F1MAH7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 IPI:IPI00372914 PRIDE:F1MAH7
Ensembl:ENSRNOT00000013683 ArrayExpress:F1MAH7 Uniprot:F1MAH7
Length = 1046
Score = 234 (87.4 bits), Expect = 5.1e-19, Sum P(3) = 5.1e-19
Identities = 63/187 (33%), Positives = 99/187 (52%)
Query: 761 GGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G K P ++ ++ +++ V+IF S+K CE+ A ++K F+ + E +
Sbjct: 367 GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKL--DFNTDEEKKMVEEV- 423
Query: 820 ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
+AID L L P +E LP G+ HH GL +E +E + +GL++ L AT
Sbjct: 424 FNNAIDCLSDEDKKL-PQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT 482
Query: 877 STLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
T A G+N+PAR V+F R G+DF I Y QM+GRAGR G+D +G +L+ E
Sbjct: 483 ETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD-E 541
Query: 933 EVKKIMG 939
++ +G
Sbjct: 542 KMSPTIG 548
Score = 79 (32.9 bits), Expect = 5.1e-19, Sum P(3) = 5.1e-19
Identities = 34/138 (24%), Positives = 60/138 (43%)
Query: 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSI 582
S Y VECL ++ ++++ A TSAGK+ AE + L ++ + P ++
Sbjct: 141 SIFYREMVECLTIN-----QSVLVSAHTSAGKTVCAEYAIALALREKQRV-IFTSPIKAL 194
Query: 583 CAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSE 642
+K + + +G G ++ S V T E S++ R E R E
Sbjct: 195 SNQKYREMYEEFQDVGLMT-------GDVTINPTASCLVMTTEILRSMLYRGSEVMR--E 245
Query: 643 IGIIVIDELHMVADQNRG 660
+ ++ DE+H + D RG
Sbjct: 246 VAWVIFDEIHYMRDSERG 263
Score = 67 (28.6 bits), Expect = 5.1e-19, Sum P(3) = 5.1e-19
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 703 VGMSATMPNVAAVADWL-----QAA--LYETNFRPVPLEEYI 737
V +SAT+PN A+W+ Q +Y T++RP PL+ YI
Sbjct: 280 VFLSATIPNARQFAEWICHLHKQPCHVIY-TDYRPTPLQHYI 320
>UNIPROTKB|G4N3Z7 [details] [associations]
symbol:MGG_05900 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003583 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00278 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:CM001233 GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 RefSeq:XP_003711726.1
ProteinModelPortal:G4N3Z7 EnsemblFungi:MGG_05900T0 GeneID:2684075
KEGG:mgr:MGG_05900 Uniprot:G4N3Z7
Length = 1508
Score = 235 (87.8 bits), Expect = 8.2e-19, Sum P(3) = 8.2e-19
Identities = 80/297 (26%), Positives = 138/297 (46%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAAN 759
+++V +SAT+PN VA WL + N +P LE + + + +K V + + N
Sbjct: 410 IRVVALSATVPNSEDVAKWLGRGNTD-NHQPARLETFGEEFRPVRLQKH--VYGLHCSGN 466
Query: 760 LGGKDPDHIVELCDEVVQEGHS--VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF 817
+P +LC+ + +++FC +RK CE TA+ +S+ I++ +
Sbjct: 467 AFQFEPQLDTKLCEVITTHSQKKPIIVFCFTRKSCELTAKKLSQLW----ISMADDKKPW 522
Query: 818 IDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS 877
++ GL V+++ GVA+HHAGL ++R VE Y +G + V+ TS
Sbjct: 523 ---PGPGQNMKVTNDGLQQVMQQ----GVAFHHAGLEQQDRLAVEKAYLEGKLHVICCTS 575
Query: 878 TLAAGVNLPARRVIFRQPRIGRDFIDGT--RYR-----QMAGRAGRTGIDTKGESMLICK 930
TL+ GVNLP VI + +G F DG Y QM GRAGR D ++++ +
Sbjct: 576 TLSVGVNLPCHTVILKGT-MG--FQDGKLLEYSDLEVVQMLGRAGRPQFDNSAVAIILTR 632
Query: 931 PEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
E K + L S L + + H + + G +++ + +++ T L
Sbjct: 633 -SETKARYEAMASGTQVLESTLHHN---LIHHLNSEICLGTIRSLDSAKEWLKSTFL 685
Score = 92 (37.4 bits), Expect = 8.2e-19, Sum P(3) = 8.2e-19
Identities = 31/124 (25%), Positives = 60/124 (48%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRLI-STGK--MALLVLPYVSICAEKAEHLEVLLEPLGR 599
N+V A T +GK+ + E+ + + L +T + + V P ++C+E+A E L
Sbjct: 271 NVVVSAPTGSGKTAIFELAICKLLSQNTDQNFKVIYVAPTKALCSERARDWESKFRHLNL 330
Query: 600 HVRSYYGNQGGGSLPK--DTSVAVCTIEKANSLVNRMLEEGRLSE-IGIIVIDELHMVAD 656
G+ + + + V T EK +S+ R + +L + + +++IDE+H + D
Sbjct: 331 TSAELTGDTFSTDMSRVRAAQIIVTTPEKLDSITRRWEDYRKLLDLVQLVLIDEVHFLKD 390
Query: 657 QNRG 660
RG
Sbjct: 391 -TRG 393
Score = 57 (25.1 bits), Expect = 8.2e-19, Sum P(3) = 8.2e-19
Identities = 22/89 (24%), Positives = 41/89 (46%)
Query: 1291 KIKNGARKIVLEKAEE----ARIAAFSAFKSLGL-NVPQFSRPILSTATENSTGEEEAAT 1345
KI+ ++K LE E+ AR S KS + ++P +P +S A E+ + + T
Sbjct: 1221 KIEGNSKKRGLEVEEQVISGARSPVSSTTKSAPITSMPPPKKPKISKAVESQSLQRNP-T 1279
Query: 1346 TAPRNDKSSSFIFPVPMEHSDKPSLEANQ 1374
TA + ++ P + P ++ +Q
Sbjct: 1280 TATSGKRVQKYMAPTSYQIQRAPVIDLSQ 1308
Score = 44 (20.5 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 26/103 (25%), Positives = 43/103 (41%)
Query: 1306 EARIAAFSAFKSLGLNVPQFSRPILSTATENSTGEE------EAAT-----TAP---RND 1351
+A AA S F+ G++V P+L EE EA+ ++P R D
Sbjct: 1364 KAAQAAPSPFREGGMDVTLTPEPMLGITASGGISEEDQKKLLEASRILGLRSSPDIVRTD 1423
Query: 1352 KSSSFIFP-VPMEHSDKPSLEANQISKKVDLESAGEKLLETSD 1393
S P + +D+P E ++ ++DL G+ + T D
Sbjct: 1424 TSEESSLPGSSYKVTDEPESEIYKLGSELDL---GQNSIPTPD 1463
Score = 39 (18.8 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 2135 LEVDPSVIKEAVSLVQKCMESAALLLVP 2162
LEV+ VI A S V +SA + +P
Sbjct: 1231 LEVEEQVISGARSPVSSTTKSAPITSMP 1258
Score = 37 (18.1 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 1387 KLLETSDNELSALVEGGSITELQQKFD 1413
KL+ +N L G S++E +F+
Sbjct: 729 KLIRFDNNVLECTTAGRSMSEYMIRFE 755
>UNIPROTKB|F1RQW4 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:CT956038 Ensembl:ENSSSCT00000001566 ArrayExpress:F1RQW4
Uniprot:F1RQW4
Length = 1246
Score = 221 (82.9 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 67/183 (36%), Positives = 91/183 (49%)
Query: 759 NLGGKDPD---HIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815
N GG D ++ L +E V++F SR C+ A L + S S
Sbjct: 543 NQGGPAQDRGVYLSLLASLRAREQLPVVVFTFSRGRCDEQASG----LTSLDLTTSSEKS 598
Query: 816 EF-IDITSAIDALRRCPAGLDPVLE--ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872
E + + + LR L VL E L G+ HH+G+ +E+VE + +GLV+V
Sbjct: 599 EIHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKV 658
Query: 873 LTATSTLAAGVNLPARRVIFRQPRI--G---RDFIDGTRYRQMAGRAGRTGIDTKGESML 927
L AT T A GVN+PAR V+F R G RD + G Y QMAGRAGR G+D G +L
Sbjct: 659 LFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPG-EYVQMAGRAGRRGLDPTGTVIL 717
Query: 928 ICK 930
+CK
Sbjct: 718 LCK 720
Score = 91 (37.1 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL------QAALYETNFRPVPLEEYIKVGNA 742
P H + I+ +SAT+PN ADW+ Q + T RPVPLE Y+ GN+
Sbjct: 445 PDH-VSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNS 496
Score = 66 (28.3 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 34/128 (26%), Positives = 58/128 (45%)
Query: 539 LQRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597
L+R + V+ A+ TSAGK+ VAE + ++ M + Y S ++ L
Sbjct: 322 LERHDSVFVAAHTSAGKTVVAEYAIA---LAQKHMTRTI--YTS-------PIKALSNQK 369
Query: 598 GRHVRSYYGNQGGGSLPKDTSV---AVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELH 652
R R+ +G+ G L D + A C I ++ ML G + ++ ++ DE+H
Sbjct: 370 FRDFRNTFGDVG--LLTGDVQLHPEASCLI-MTTEILRSMLYSGSDVIRDLEWVIFDEVH 426
Query: 653 MVADQNRG 660
+ D RG
Sbjct: 427 YINDAERG 434
>UNIPROTKB|F5H7B0 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 EMBL:AL645922
InterPro:IPR025696 Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L
IPI:IPI01021910 SMR:F5H7B0 Ensembl:ENST00000544581
Ensembl:ENST00000546549 Uniprot:F5H7B0
Length = 1053
Score = 219 (82.2 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 61/157 (38%), Positives = 82/157 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPVLE- 839
V++F SR C+ A L + S SE + + + LR L VL
Sbjct: 376 VVVFTFSRGRCDEQASG----LTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHM 431
Query: 840 -ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI- 897
E L G+ HH+G+ +E+VE + +GLV+VL AT T A GVN+PAR V+F R
Sbjct: 432 SELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH 491
Query: 898 -G---RDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
G RD + G Y QMAGRAGR G+D G +L+CK
Sbjct: 492 DGSTFRDLLPG-EYVQMAGRAGRRGLDPTGTVILLCK 527
Score = 91 (37.1 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL------QAALYETNFRPVPLEEYIKVGNA 742
P H + I+ +SAT+PN ADW+ Q + T RPVPLE Y+ GN+
Sbjct: 252 PDH-VSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNS 303
Score = 65 (27.9 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 34/128 (26%), Positives = 58/128 (45%)
Query: 539 LQRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597
L+R + V+ A+ TSAGK+ VAE + ++ M + Y S ++ L
Sbjct: 129 LERHDSVFVAAHTSAGKTVVAEYAIA---LAQKHMTRTI--YTS-------PIKALSNQK 176
Query: 598 GRHVRSYYGNQGGGSLPKDTSV---AVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELH 652
R R+ +G+ G L D + A C I ++ ML G + ++ ++ DE+H
Sbjct: 177 FRDFRNTFGDVG--LLTGDVQLHPEASCLI-MTTEILRSMLYSGSDVIRDLEWVIFDEVH 233
Query: 653 MVADQNRG 660
+ D RG
Sbjct: 234 YINDVERG 241
>UNIPROTKB|F8VS23 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00945125
SMR:F8VS23 Ensembl:ENST00000546908 Ensembl:ENST00000552714
Ensembl:ENST00000552746 Ensembl:ENST00000553255 UCSC:uc011ghl.1
Uniprot:F8VS23
Length = 1053
Score = 219 (82.2 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 61/157 (38%), Positives = 82/157 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPVLE- 839
V++F SR C+ A L + S SE + + + LR L VL
Sbjct: 376 VVVFTFSRGRCDEQASG----LTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHM 431
Query: 840 -ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI- 897
E L G+ HH+G+ +E+VE + +GLV+VL AT T A GVN+PAR V+F R
Sbjct: 432 SELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH 491
Query: 898 -G---RDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
G RD + G Y QMAGRAGR G+D G +L+CK
Sbjct: 492 DGSTFRDLLPG-EYVQMAGRAGRRGLDPTGTVILLCK 527
Score = 91 (37.1 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL------QAALYETNFRPVPLEEYIKVGNA 742
P H + I+ +SAT+PN ADW+ Q + T RPVPLE Y+ GN+
Sbjct: 252 PDH-VSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNS 303
Score = 65 (27.9 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 34/128 (26%), Positives = 58/128 (45%)
Query: 539 LQRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597
L+R + V+ A+ TSAGK+ VAE + ++ M + Y S ++ L
Sbjct: 129 LERHDSVFVAAHTSAGKTVVAEYAIA---LAQKHMTRTI--YTS-------PIKALSNQK 176
Query: 598 GRHVRSYYGNQGGGSLPKDTSV---AVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELH 652
R R+ +G+ G L D + A C I ++ ML G + ++ ++ DE+H
Sbjct: 177 FRDFRNTFGDVG--LLTGDVQLHPEASCLI-MTTEILRSMLYSGSDVIRDLEWVIFDEVH 233
Query: 653 MVADQNRG 660
+ D RG
Sbjct: 234 YINDVERG 241
>UNIPROTKB|B4DM01 [details] [associations]
symbol:SKIV2L "cDNA FLJ57529, highly similar to Helicase
SKI2W (EC 3.6.1.-)" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 eggNOG:COG4581
InterPro:IPR025696 Pfam:PF13234 UniGene:Hs.89864 HGNC:HGNC:10898
HOVERGEN:HBG060025 OrthoDB:EOG47H5P5 ChiTaRS:SKIV2L EMBL:AK297230
IPI:IPI01014021 SMR:B4DM01 STRING:B4DM01 Ensembl:ENST00000551164
Uniprot:B4DM01
Length = 1088
Score = 219 (82.2 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 61/157 (38%), Positives = 82/157 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPVLE- 839
V++F SR C+ A L + S SE + + + LR L VL
Sbjct: 411 VVVFTFSRGRCDEQASG----LTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHM 466
Query: 840 -ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI- 897
E L G+ HH+G+ +E+VE + +GLV+VL AT T A GVN+PAR V+F R
Sbjct: 467 SELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH 526
Query: 898 -G---RDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
G RD + G Y QMAGRAGR G+D G +L+CK
Sbjct: 527 DGSTFRDLLPG-EYVQMAGRAGRRGLDPTGTVILLCK 562
Score = 91 (37.1 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL------QAALYETNFRPVPLEEYIKVGNA 742
P H + I+ +SAT+PN ADW+ Q + T RPVPLE Y+ GN+
Sbjct: 287 PDH-VSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNS 338
Score = 65 (27.9 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 34/128 (26%), Positives = 58/128 (45%)
Query: 539 LQRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597
L+R + V+ A+ TSAGK+ VAE + ++ M + Y S ++ L
Sbjct: 164 LERHDSVFVAAHTSAGKTVVAEYAIA---LAQKHMTRTI--YTS-------PIKALSNQK 211
Query: 598 GRHVRSYYGNQGGGSLPKDTSV---AVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELH 652
R R+ +G+ G L D + A C I ++ ML G + ++ ++ DE+H
Sbjct: 212 FRDFRNTFGDVG--LLTGDVQLHPEASCLI-MTTEILRSMLYSGSDVIRDLEWVIFDEVH 268
Query: 653 MVADQNRG 660
+ D RG
Sbjct: 269 YINDVERG 276
>UNIPROTKB|F8VNU1 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI01022196
SMR:F8VNU1 Ensembl:ENST00000546742 Ensembl:ENST00000547054
Ensembl:ENST00000550012 Ensembl:ENST00000550640 UCSC:uc011ghk.1
Uniprot:F8VNU1
Length = 1088
Score = 219 (82.2 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 61/157 (38%), Positives = 82/157 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPVLE- 839
V++F SR C+ A L + S SE + + + LR L VL
Sbjct: 411 VVVFTFSRGRCDEQASG----LTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHM 466
Query: 840 -ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI- 897
E L G+ HH+G+ +E+VE + +GLV+VL AT T A GVN+PAR V+F R
Sbjct: 467 SELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH 526
Query: 898 -G---RDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
G RD + G Y QMAGRAGR G+D G +L+CK
Sbjct: 527 DGSTFRDLLPG-EYVQMAGRAGRRGLDPTGTVILLCK 562
Score = 91 (37.1 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL------QAALYETNFRPVPLEEYIKVGNA 742
P H + I+ +SAT+PN ADW+ Q + T RPVPLE Y+ GN+
Sbjct: 287 PDH-VSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNS 338
Score = 65 (27.9 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 34/128 (26%), Positives = 58/128 (45%)
Query: 539 LQRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597
L+R + V+ A+ TSAGK+ VAE + ++ M + Y S ++ L
Sbjct: 164 LERHDSVFVAAHTSAGKTVVAEYAIA---LAQKHMTRTI--YTS-------PIKALSNQK 211
Query: 598 GRHVRSYYGNQGGGSLPKDTSV---AVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELH 652
R R+ +G+ G L D + A C I ++ ML G + ++ ++ DE+H
Sbjct: 212 FRDFRNTFGDVG--LLTGDVQLHPEASCLI-MTTEILRSMLYSGSDVIRDLEWVIFDEVH 268
Query: 653 MVADQNRG 660
+ D RG
Sbjct: 269 YINDVERG 276
>FB|FBgn0001986 [details] [associations]
symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
Uniprot:Q9Y134
Length = 1055
Score = 226 (84.6 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 64/180 (35%), Positives = 94/180 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID--ITSAIDALRRCPAGLDPVLE 839
V+IF S+K CE A ++K N + + +D +A+D L L P +E
Sbjct: 405 VIIFSFSKKDCEIYAMQMAKL----DFNT-PDEKKLVDEVFNNAMDVLTEEDRRL-PQVE 458
Query: 840 ETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR 896
LP G+ HH GL +E +E + +GL++ L AT T A G+N+PAR V+F PR
Sbjct: 459 NVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPR 518
Query: 897 I--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMG--LLNESCPPLHS 950
G+ F I Y QMAGRAGR G+D KG +L+ E+V +G ++ P++S
Sbjct: 519 KFDGKKFRWISSGEYIQMAGRAGRRGLDDKGIVILMID-EKVSPAVGRDIVQGKADPINS 577
Score = 87 (35.7 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 33/141 (23%), Positives = 65/141 (46%)
Query: 523 SKLYPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579
+K YP+ ++ +L ++++ A TSAGK+ VAE + + L + ++ + P
Sbjct: 145 AKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQRV-IYTTPI 203
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR 639
++ +K + +G G ++ S + T E +++ R E R
Sbjct: 204 KALSNQKFREFTDEFKDVGLVT-------GDVTINPSASCLIMTTEILRNMLYRGSEIMR 256
Query: 640 LSEIGIIVIDELHMVADQNRG 660
E+G +V DE+H + D+ RG
Sbjct: 257 --EVGWVVFDEIHYMRDKERG 275
Score = 67 (28.6 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 700 LQIVGMSATMPNVAAVADWL-----QAA-LYETNFRPVPLEEYI 737
++ V +SAT+PN A+W+ Q + T++RP PL+ YI
Sbjct: 289 VRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYI 332
Score = 41 (19.5 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 21/93 (22%), Positives = 38/93 (40%)
Query: 391 KGTKPGC-GAADTSEAMMFRDGVVSEKGSVTHKSCQKIKFKCHHDNTSRTEGISDVQEKD 449
KG K G + EA + +KG VT + +++K + T + D D
Sbjct: 36 KGNKRQADGTTASKEATSSKGAEGDDKGDVTEEPTKRLK------QEASTVAVDDDNNAD 89
Query: 450 SVLIVHERKLDIS-SQGIDSITSDSPTNVIKKP 481
R LDI S ++++ + T+++ P
Sbjct: 90 DE---PTRTLDIDDSATLEALRTRIVTHLLDAP 119
>UNIPROTKB|E1BMS0 [details] [associations]
symbol:LOC100139548 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:DAAA02055371 IPI:IPI00690289 RefSeq:XP_003583920.1
RefSeq:XP_003587743.1 Ensembl:ENSBTAT00000007339 GeneID:100139548
KEGG:bta:100139548 Uniprot:E1BMS0
Length = 1246
Score = 219 (82.2 bits), Expect = 2.9e-18, Sum P(3) = 2.9e-18
Identities = 61/157 (38%), Positives = 82/157 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPVLE- 839
V++F SR C+ A L + S SE + + + LR L VL
Sbjct: 569 VVVFTFSRGRCDEQASG----LTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHM 624
Query: 840 -ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI- 897
E L G+ HH+G+ +E+VE + +GLV+VL AT T A GVN+PAR V+F R
Sbjct: 625 SELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH 684
Query: 898 -G---RDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
G RD + G Y QMAGRAGR G+D G +L+CK
Sbjct: 685 DGSTFRDLLPG-EYVQMAGRAGRRGLDPTGTVILLCK 720
Score = 91 (37.1 bits), Expect = 2.9e-18, Sum P(3) = 2.9e-18
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL------QAALYETNFRPVPLEEYIKVGNA 742
P H + I+ +SAT+PN ADW+ Q + T RPVPLE Y+ GN+
Sbjct: 445 PDH-VSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNS 496
Score = 66 (28.3 bits), Expect = 2.9e-18, Sum P(3) = 2.9e-18
Identities = 34/128 (26%), Positives = 58/128 (45%)
Query: 539 LQRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597
L+R + V+ A+ TSAGK+ VAE + ++ M + Y S ++ L
Sbjct: 322 LERHDSVFVAAHTSAGKTVVAEYAIA---LAQKHMTRTI--YTS-------PIKALSNQK 369
Query: 598 GRHVRSYYGNQGGGSLPKDTSV---AVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELH 652
R R+ +G+ G L D + A C I ++ ML G + ++ ++ DE+H
Sbjct: 370 FRDFRNTFGDVG--LLTGDVQLHPEASCLI-MTTEILRSMLYSGSDVIRDLEWVIFDEVH 426
Query: 653 MVADQNRG 660
+ D RG
Sbjct: 427 YINDAERG 434
>UNIPROTKB|E2RSD6 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055087 "Ski complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 KO:K12599 OMA:TRLDETC GeneTree:ENSGT00690000102154
CTD:6499 EMBL:AAEX03008222 RefSeq:XP_538841.2
ProteinModelPortal:E2RSD6 Ensembl:ENSCAFT00000001053 GeneID:481720
KEGG:cfa:481720 NextBio:20856463 Uniprot:E2RSD6
Length = 1246
Score = 219 (82.2 bits), Expect = 2.9e-18, Sum P(3) = 2.9e-18
Identities = 61/157 (38%), Positives = 82/157 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPVLE- 839
V++F SR C+ A L + S SE + + + LR L VL
Sbjct: 569 VVVFTFSRGRCDEQASG----LTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHM 624
Query: 840 -ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI- 897
E L G+ HH+G+ +E+VE + +GLV+VL AT T A GVN+PAR V+F R
Sbjct: 625 SELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH 684
Query: 898 -G---RDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
G RD + G Y QMAGRAGR G+D G +L+CK
Sbjct: 685 DGSTFRDLLPG-EYVQMAGRAGRRGLDPTGTVILLCK 720
Score = 91 (37.1 bits), Expect = 2.9e-18, Sum P(3) = 2.9e-18
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL------QAALYETNFRPVPLEEYIKVGNA 742
P H + I+ +SAT+PN ADW+ Q + T RPVPLE Y+ GN+
Sbjct: 445 PDH-VSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNS 496
Score = 66 (28.3 bits), Expect = 2.9e-18, Sum P(3) = 2.9e-18
Identities = 34/128 (26%), Positives = 58/128 (45%)
Query: 539 LQRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597
L+R + V+ A+ TSAGK+ VAE + ++ M + Y S ++ L
Sbjct: 322 LERHDSVFVAAHTSAGKTVVAEYAIA---LAQKHMTRTI--YTS-------PIKALSNQK 369
Query: 598 GRHVRSYYGNQGGGSLPKDTSV---AVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELH 652
R R+ +G+ G L D + A C I ++ ML G + ++ ++ DE+H
Sbjct: 370 FRDFRNTFGDVG--LLTGDVQLHPEASCLI-MTTEILRSMLYSGSDVIRDLEWVIFDEVH 426
Query: 653 MVADQNRG 660
+ D RG
Sbjct: 427 YINDAERG 434
>UNIPROTKB|Q15477 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] Reactome:REACT_17015 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:AF019413 EMBL:AL662849 EMBL:AL645922
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC EMBL:U09877 EMBL:X98378
EMBL:Z48796 IPI:IPI00414819 PIR:S56752 RefSeq:NP_008860.4
UniGene:Hs.89864 ProteinModelPortal:Q15477 SMR:Q15477 IntAct:Q15477
STRING:Q15477 PhosphoSite:Q15477 DMDM:3123284 PaxDb:Q15477
PRIDE:Q15477 DNASU:6499 Ensembl:ENST00000375394
Ensembl:ENST00000383336 Ensembl:ENST00000412823
Ensembl:ENST00000421789 Ensembl:ENST00000429465
Ensembl:ENST00000448219 GeneID:6499 KEGG:hsa:6499 UCSC:uc003nyn.1
CTD:6499 GeneCards:GC06P031926 H-InvDB:HIX0005742
H-InvDB:HIX0166115 H-InvDB:HIX0166390 H-InvDB:HIX0166908
H-InvDB:HIX0167165 H-InvDB:HIX0167404 HGNC:HGNC:10898 MIM:600478
MIM:614602 neXtProt:NX_Q15477 Orphanet:84064 PharmGKB:PA35798
HOVERGEN:HBG060025 InParanoid:Q15477 OrthoDB:EOG47H5P5
PhylomeDB:Q15477 ChiTaRS:SKIV2L GenomeRNAi:6499 NextBio:25263
ArrayExpress:Q15477 Bgee:Q15477 CleanEx:HS_SKIV2L
Genevestigator:Q15477 Uniprot:Q15477
Length = 1246
Score = 219 (82.2 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 61/157 (38%), Positives = 82/157 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPVLE- 839
V++F SR C+ A L + S SE + + + LR L VL
Sbjct: 569 VVVFTFSRGRCDEQASG----LTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHM 624
Query: 840 -ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI- 897
E L G+ HH+G+ +E+VE + +GLV+VL AT T A GVN+PAR V+F R
Sbjct: 625 SELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH 684
Query: 898 -G---RDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
G RD + G Y QMAGRAGR G+D G +L+CK
Sbjct: 685 DGSTFRDLLPG-EYVQMAGRAGRRGLDPTGTVILLCK 720
Score = 91 (37.1 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL------QAALYETNFRPVPLEEYIKVGNA 742
P H + I+ +SAT+PN ADW+ Q + T RPVPLE Y+ GN+
Sbjct: 445 PDH-VSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNS 496
Score = 65 (27.9 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 34/128 (26%), Positives = 58/128 (45%)
Query: 539 LQRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597
L+R + V+ A+ TSAGK+ VAE + ++ M + Y S ++ L
Sbjct: 322 LERHDSVFVAAHTSAGKTVVAEYAIA---LAQKHMTRTI--YTS-------PIKALSNQK 369
Query: 598 GRHVRSYYGNQGGGSLPKDTSV---AVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELH 652
R R+ +G+ G L D + A C I ++ ML G + ++ ++ DE+H
Sbjct: 370 FRDFRNTFGDVG--LLTGDVQLHPEASCLI-MTTEILRSMLYSGSDVIRDLEWVIFDEVH 426
Query: 653 MVADQNRG 660
+ D RG
Sbjct: 427 YINDVERG 434
>POMBASE|SPAC17H9.02 [details] [associations]
symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
[GO:0043630 "ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
Uniprot:O13799
Length = 1030
Score = 231 (86.4 bits), Expect = 4.1e-18, Sum P(5) = 4.1e-18
Identities = 60/153 (39%), Positives = 86/153 (56%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLE-- 839
+++FC S+K CE A K + N +E D SAI+ L GL E
Sbjct: 373 IIVFCFSKKECEINAHQFGKLDLNDTENKELV-TEIFD--SAINQLSEEDRGLRQFEEMR 429
Query: 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR--I 897
L G+ HH+GL +E+VE +++GLVR+L AT T + G+N+PAR V+F + +
Sbjct: 430 SLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFS 489
Query: 898 GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLI 928
G +F + Y QM+GRAGR GIDTKG S++I
Sbjct: 490 GNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVI 522
Score = 86 (35.3 bits), Expect = 4.1e-18, Sum P(5) = 4.1e-18
Identities = 35/141 (24%), Positives = 72/141 (51%)
Query: 523 SKLYPWQVECLHVDGV--LQR-RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579
+K YP++++ + ++R +++ A TSAGK+ +AE + + L + ++ + P
Sbjct: 119 AKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRV-IYTSPI 177
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR 639
S+ +K + E+L E G V G+ S+ S + T E +++ + E
Sbjct: 178 KSLSNQK--YRELLSE-FG-DVGLMTGDV---SINPSASCLIMTTEILRAMLYKNSEI-- 228
Query: 640 LSEIGIIVIDELHMVADQNRG 660
+ EI ++ DE+H + D++RG
Sbjct: 229 MHEIAWVIFDEVHYMRDKDRG 249
Score = 63 (27.2 bits), Expect = 4.1e-18, Sum P(5) = 4.1e-18
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYI 737
++ + +SAT+PN A W+ + T++RP PL+ +I
Sbjct: 263 IRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPTPLQHFI 306
Score = 44 (20.5 bits), Expect = 4.1e-18, Sum P(5) = 4.1e-18
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 1227 RAEIVE--LTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRV 1284
+ EI+E L PY K S+ RA Y R L + A I +I + + + I + ++
Sbjct: 783 KLEILEPKLFDSPYYKDSKHRAEYHE-FRKKLNL-RAQIKDISTKITNTEAIIQLRELKI 840
Query: 1285 QLGVAKKI 1292
+ V +++
Sbjct: 841 RQRVLRRL 848
Score = 39 (18.8 bits), Expect = 4.1e-18, Sum P(5) = 4.1e-18
Identities = 18/83 (21%), Positives = 35/83 (42%)
Query: 1977 GRSEDSVGSQERDQTKRLIY-GILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASW 2035
GR + S + LI+ G M P ++ L+C E K ++ + P +
Sbjct: 861 GRVACEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFVYEDKSEVSTLNLKEPFKKMY 920
Query: 2036 LHVAVSSCHQKGYVESLKGRKRF 2058
L + + + + V SL+ + +F
Sbjct: 921 LTI-IEAAKRIATV-SLESKLQF 941
>UNIPROTKB|F1LP39 [details] [associations]
symbol:Skiv2l "Protein Skiv2l" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 RGD:1303059 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
OMA:TRLDETC GeneTree:ENSGT00690000102154 IPI:IPI00417365
Ensembl:ENSRNOT00000000481 Uniprot:F1LP39
Length = 1206
Score = 219 (82.2 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 61/157 (38%), Positives = 82/157 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPVLE- 839
V++F SR C+ A L + S SE + + + LR L VL
Sbjct: 528 VVVFTFSRGRCDEQASG----LTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHM 583
Query: 840 -ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI- 897
E L G+ HH+G+ +E+VE + +GLV+VL AT T A GVN+PAR V+F R
Sbjct: 584 SELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH 643
Query: 898 -G---RDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
G RD + G Y QMAGRAGR G+D G +L+CK
Sbjct: 644 DGSTFRDLLPG-EYVQMAGRAGRRGLDPTGTVILLCK 679
Score = 92 (37.4 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL------QAALYETNFRPVPLEEYIKVGNA 742
P H + I+ +SAT+PN ADW+ Q + T RPVPLE Y+ GN+
Sbjct: 404 PEH-VSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNS 455
Score = 62 (26.9 bits), Expect = 5.2e-18, Sum P(3) = 5.2e-18
Identities = 33/128 (25%), Positives = 58/128 (45%)
Query: 539 LQRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597
L++ + V+ A+ TSAGK+ VAE + ++ M + Y S ++ L
Sbjct: 281 LEQHDSVFVAAHTSAGKTVVAEYAIA---LAQKHMTRTI--YTS-------PIKALSNQK 328
Query: 598 GRHVRSYYGNQGGGSLPKDTSV---AVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELH 652
R R+ +G+ G L D + A C I ++ ML G + ++ ++ DE+H
Sbjct: 329 FRDFRNTFGDVG--LLTGDVQLHPEASCLI-MTTEILRSMLYSGSDVIRDLEWVIFDEVH 385
Query: 653 MVADQNRG 660
+ D RG
Sbjct: 386 YINDAERG 393
>RGD|1303059 [details] [associations]
symbol:Skiv2l "superkiller viralicidic activity 2-like (S.
cerevisiae )" species:10116 "Rattus norvegicus" [GO:0055087 "Ski
complex" evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
RGD:1303059 GO:GO:0005524 GO:GO:0003676 EMBL:BX883045
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 HOGENOM:HOG000163048
KO:K12599 CTD:6499 HOVERGEN:HBG060025 OrthoDB:EOG47H5P5
IPI:IPI00417365 RefSeq:NP_998724.1 UniGene:Rn.138027
ProteinModelPortal:Q6MG76 IntAct:Q6MG76 PhosphoSite:Q6MG76
PRIDE:Q6MG76 GeneID:294260 KEGG:rno:294260 UCSC:RGD:1303059
InParanoid:Q6MG76 NextBio:637849 ArrayExpress:Q6MG76
Genevestigator:Q6MG76 Uniprot:Q6MG76
Length = 1241
Score = 219 (82.2 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 61/157 (38%), Positives = 82/157 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPVLE- 839
V++F SR C+ A L + S SE + + + LR L VL
Sbjct: 563 VVVFTFSRGRCDEQASG----LTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHM 618
Query: 840 -ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI- 897
E L G+ HH+G+ +E+VE + +GLV+VL AT T A GVN+PAR V+F R
Sbjct: 619 SELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH 678
Query: 898 -G---RDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
G RD + G Y QMAGRAGR G+D G +L+CK
Sbjct: 679 DGSTFRDLLPG-EYVQMAGRAGRRGLDPTGTVILLCK 714
Score = 92 (37.4 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL------QAALYETNFRPVPLEEYIKVGNA 742
P H + I+ +SAT+PN ADW+ Q + T RPVPLE Y+ GN+
Sbjct: 439 PEH-VSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNS 490
Score = 62 (26.9 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 33/128 (25%), Positives = 58/128 (45%)
Query: 539 LQRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597
L++ + V+ A+ TSAGK+ VAE + ++ M + Y S ++ L
Sbjct: 316 LEQHDSVFVAAHTSAGKTVVAEYAIA---LAQKHMTRTI--YTS-------PIKALSNQK 363
Query: 598 GRHVRSYYGNQGGGSLPKDTSV---AVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELH 652
R R+ +G+ G L D + A C I ++ ML G + ++ ++ DE+H
Sbjct: 364 FRDFRNTFGDVG--LLTGDVQLHPEASCLI-MTTEILRSMLYSGSDVIRDLEWVIFDEVH 420
Query: 653 MVADQNRG 660
+ D RG
Sbjct: 421 YINDAERG 428
>ZFIN|ZDB-GENE-010430-5 [details] [associations]
symbol:skiv2l "superkiller viralicidic activity 2 (S.
cerevisiae homolog)-like" species:7955 "Danio rerio" [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-010430-5 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GeneTree:ENSGT00690000102154 EMBL:FP102194 EMBL:FP067438
IPI:IPI00490616 Ensembl:ENSDART00000089609 OMA:TIMASAD Bgee:F1R881
Uniprot:F1R881
Length = 1249
Score = 216 (81.1 bits), Expect = 6.1e-18, Sum P(3) = 6.1e-18
Identities = 58/156 (37%), Positives = 84/156 (53%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID--ITSAIDALRRCPAGLDPVLE 839
V+ F SR C+ AR ++ SI S F+ +T R+ P L ++
Sbjct: 578 VVAFTFSRTRCDENARSLTSLDLTTSIE-KSEIHSFLQKSLTRLRGGDRQLPQIL--LMR 634
Query: 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR--- 896
+ L G+ HH+G+ +EV+E + +GLV+VL AT T A GVN+PAR V+F R
Sbjct: 635 DLLKRGIGVHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHD 694
Query: 897 -IG-RDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
G R+ + G Y QMAGRAGR G+D G +++CK
Sbjct: 695 GTGFRNLLPG-EYIQMAGRAGRRGLDATGTVIILCK 729
Score = 88 (36.0 bits), Expect = 6.1e-18, Sum P(3) = 6.1e-18
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL----QAALY--ETNFRPVPLEEYIKVGNAIYSKK 747
P H + I+ +SAT+PN ++W+ + +Y T RPVPLE Y+ GN+ ++K
Sbjct: 453 PEH-VSIILLSATVPNAVEFSEWIGRIKKRHIYVISTIKRPVPLEHYLYTGNSTKTQK 509
Score = 69 (29.3 bits), Expect = 6.1e-18, Sum P(3) = 6.1e-18
Identities = 41/171 (23%), Positives = 75/171 (43%)
Query: 504 DLSSW-LPSEI---CSIYKKR--GISKLYPWQVECLHVDGVL--QRRNLVYCAS-TSAGK 554
D W +P +I C+ + KR + YP++++ +L + + V+ A+ TSAGK
Sbjct: 287 DNKKWAIPVDISSPCADFYKRIPDPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGK 346
Query: 555 SFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP 614
+ VAE + +S M + Y S ++ L R ++ +G+ G L
Sbjct: 347 TVVAEYAIA---LSQKHMTRTI--YTS-------PIKALSNQKFRDFKNTFGDVG--LLT 392
Query: 615 KDTSV---AVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELHMVADQNRG 660
D + C I ++ ML G + ++ ++ DE+H + D RG
Sbjct: 393 GDVQLNPEGSCLI-MTTEILRSMLYNGSEVIRDLEWVIFDEVHYINDAERG 442
>UNIPROTKB|G4NH56 [details] [associations]
symbol:MGG_03931 "FRQ-interacting RNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0031499 GO:GO:0043629
GO:GO:0071035 GO:GO:0071038 EMBL:CM001236 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000467 GO:GO:0071042
GO:GO:0071051 GO:GO:0008143 GO:GO:0034459 GO:GO:0034475
GO:GO:0034476 KO:K12598 InterPro:IPR025696 Pfam:PF13234
GO:GO:0071049 RefSeq:XP_003719933.1 EnsemblFungi:MGG_03931T0
GeneID:2677161 KEGG:mgr:MGG_03931 Uniprot:G4NH56
Length = 1102
Score = 206 (77.6 bits), Expect = 6.7e-18, Sum P(4) = 6.7e-18
Identities = 53/153 (34%), Positives = 87/153 (56%)
Query: 780 HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI-DI-TSAIDALRRCPAGLDPV 837
H V++F S++ CE+ A VS F+ H S+ + + DI +AI +L GL P
Sbjct: 434 HPVIVFNFSKRECENLALKVSTL--NFN---HESEQKLVEDIFRNAIMSLSEEDQGL-PQ 487
Query: 838 LEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894
++ LP G+ HH+GL +E +E +++ L++VL AT T + G+N+PA+ V+F Q
Sbjct: 488 IQHLLPLLKKGIGVHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFSQ 547
Query: 895 PR----IGRDFIDGTRYRQMAGRAGRTGIDTKG 923
+ + + + Y QM+GRAGR G+D +G
Sbjct: 548 VKKFDGVKERPLTPSEYIQMSGRAGRRGLDDRG 580
Score = 89 (36.4 bits), Expect = 6.7e-18, Sum P(4) = 6.7e-18
Identities = 35/137 (25%), Positives = 60/137 (43%)
Query: 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSIC 583
KL P+Q + V + + +++ A TSAGK+ VAE + + + + P ++
Sbjct: 176 KLDPFQ--SISVASIERDESVLVSAHTSAGKTVVAEYA-IAHCLKRNQRVIYTSPIKALS 232
Query: 584 AEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEI 643
+K + +G G ++ S V T E S++ R E R E+
Sbjct: 233 NQKFRDFQAEFGDVGLMT-------GDVTINPTASCLVMTTEILRSMLYRGSEITR--EV 283
Query: 644 GIIVIDELHMVADQNRG 660
G +V DE+H + D RG
Sbjct: 284 GWVVFDEIHYMRDATRG 300
Score = 77 (32.2 bits), Expect = 6.7e-18, Sum P(4) = 6.7e-18
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 700 LQIVGMSATMPNVAAVADWL-----QAA-LYETNFRPVPLEEYI--KVGNAIY 744
++ V +SAT+PN A+W+ QA + T+FRP PL+ Y+ G+ IY
Sbjct: 314 VRYVFLSATIPNAFQFAEWIAKIHRQACHVVYTDFRPTPLQNYVFPAGGDGIY 366
Score = 47 (21.6 bits), Expect = 6.7e-18, Sum P(4) = 6.7e-18
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 454 VHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKD 501
V + + + + G+D +SD+ T KK ++ D++ + G +K+
Sbjct: 7 VFDEQPEAPAVGLDRNSSDTKTKKTKKSKRDKSKDKSKKRKADGHVKN 54
>FB|FBgn0263599 [details] [associations]
symbol:l(3)72Ab "lethal (3) 72Ab" species:7227 "Drosophila
melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005682 "U5 snRNP" evidence=ISS] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0007067 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR
GO:GO:0004004 GO:GO:0000381 EMBL:BT016121 EMBL:AY069270
RefSeq:NP_648818.3 UniGene:Dm.973 ProteinModelPortal:Q9VUV9
SMR:Q9VUV9 IntAct:Q9VUV9 STRING:Q9VUV9 PaxDb:Q9VUV9 PRIDE:Q9VUV9
EnsemblMetazoa:FBtr0075527 GeneID:39737 KEGG:dme:Dmel_CG5931
FlyBase:FBgn0036548 InParanoid:Q9VUV9 OrthoDB:EOG4S4MWW
PhylomeDB:Q9VUV9 GenomeRNAi:39737 NextBio:815125 Bgee:Q9VUV9
GermOnline:CG5931 Uniprot:Q9VUV9
Length = 2142
Score = 255 (94.8 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 94/301 (31%), Positives = 147/301 (48%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
+++VG+SAT+PN VA +L+ ++ ++RPV LE+ +G ++K + R
Sbjct: 646 VRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQY-IG---VTEKKALKRF 701
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813
+ + K +H + VL+F SRK TAR V + + +
Sbjct: 702 QVMNEIVYEKTMEHAGR---------NQVLVFVHSRKETGKTARAV----RDMCLEQDTL 748
Query: 814 DSEFIDITSAIDALR-RCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872
S + +++++ LR + L+E LP G A HHAG+T +R +VE + ++V
Sbjct: 749 GSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQV 808
Query: 873 LTATSTLAAGVNLPARRVIFR-----QPRIGRDF-IDGTRYRQMAGRAGRTGIDTKGESM 926
L +T+TLA GVNLPA VI + P GR + QM GRAGR DTKGE +
Sbjct: 809 LVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGI 868
Query: 927 LICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTL 986
LI E++ + LLN+ P + S M +A E+V G VQ +D ++ T
Sbjct: 869 LITNHSELQFYLSLLNQQLP-IESQFISKLPDMLNA--EIVLG-TVQHLQDAVNWLGYTY 924
Query: 987 L 987
L
Sbjct: 925 L 925
Score = 159 (61.0 bits), Expect = 4.3e-08, Sum P(4) = 4.3e-08
Identities = 77/296 (26%), Positives = 123/296 (41%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYET-NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IV +SA++ + VA WL T NF P + ++ + +V A
Sbjct: 1484 IRIVALSASLTDARDVAQWLGCNPNATFNFHP----SVRPIPLELHIQGYNVTHNATRIA 1539
Query: 759 NLGGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF 817
+ + I++ H V++F SSRK TA V + +E
Sbjct: 1540 TMSKPVYNAILKY------SAHKPVIVFVSSRKQARLTAIDVLTYAASDLQPNRFFHAEE 1593
Query: 818 IDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS 877
DI ++ + D L+ETL GVAY H GL+ + +VE + G V+V +
Sbjct: 1594 EDIKPFLERMT------DKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISR 1647
Query: 878 TLAAGVNLPARRVIFRQPRI--GRD--FIDG--TRYRQMAGRAGRTGIDTKGESMLICKP 931
L G+++ A VI + G++ + D T QM GRA R D + +L+C+
Sbjct: 1648 DLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQS 1707
Query: 932 EEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
+ +NE P + S L D H EVV I + +D Y+ T L
Sbjct: 1708 SKKDFFKKFINEPLP-IESHL--DHRMHDHFNAEVVTKTI-ENKQDAVDYLTWTFL 1759
Score = 94 (38.1 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 35/130 (26%), Positives = 65/130 (50%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL---IST-GKMALLVLPYVSICAEKAEHLEVLLEPLG 598
N++ CA T AGK+ VA + M+R + I+ G + + + K+ ++ ++ G
Sbjct: 498 NMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSL-VQEMVGNFG 556
Query: 599 RHVRSYYGN----QGGGSLPKD----TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDE 650
R + Y G L ++ T V VCT EK + + + E +S + +++IDE
Sbjct: 557 RRLACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDE 616
Query: 651 LHMVADQNRG 660
+H++ D+ RG
Sbjct: 617 IHLLHDE-RG 625
Score = 49 (22.3 bits), Expect = 0.00092, Sum P(4) = 0.00092
Identities = 23/117 (19%), Positives = 43/117 (36%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA-EHLEVLLEPLGRHV 601
N+ A T +GK +AE ++R + + L A+ L V
Sbjct: 1345 NVFVGAPTGSGKMTIAEFAIMRLFTTQSDARCVYLVSEEALADLVFADWHSKFGSLDIKV 1404
Query: 602 RSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657
G G L + + T +K + L R + + + + ++DEL +V +
Sbjct: 1405 VKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGE 1461
Score = 42 (19.8 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 230 VTDSNASLLLQASLRKCDKSSKSTLNTTACYTPEPSIVKTY---VR-ETPKSTCGNSIFS 285
VTD +LL+ + D S + TA E I +TY V+ E + N ++
Sbjct: 164 VTDERFALLVNLGKKITDFGSDAVNALTAAPNNEEQIDETYGINVQFEESEEESDNDMY- 222
Query: 286 PGEAFWNEAIEIADGFFAHTDIGPSQIAEGIADSKSQNEI 325
GE ++A + +G A D + AE +A+ ++ N +
Sbjct: 223 -GEIRDDDAQD--EGEEARID--HTLHAENLANEEAANNV 257
Score = 40 (19.1 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 2127 LQVHDELVLEVDPSVIKEAVSLVQKCME 2154
LQ+ EL + + ++ +A+ L+Q C++
Sbjct: 1906 LQLGPELQGDTE-QILSKAIRLIQACVD 1932
Score = 38 (18.4 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 233 SNASLLLQASLRKCDKSSKSTLNTTAC 259
+N++L+LQA +R ++ + C
Sbjct: 15 ANSNLVLQADVRLIERPRRDEATGEVC 41
>SGD|S000000974 [details] [associations]
symbol:BRR2 "RNA-dependent ATPase RNA helicase (DEIH box)"
species:4932 "Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000388 "spliceosome
conformational change to release U4 (or U4atac) and U1 (or U11)"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 SGD:S000000974
GO:GO:0005524 GO:GO:0005681 GO:GO:0005682 GO:GO:0003676
EMBL:BK006939 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104562 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
EMBL:U18922 KO:K12854 OrthoDB:EOG4MD17F GO:GO:0046540 GO:GO:0004004
PIR:S50675 RefSeq:NP_011099.1 PDB:3HIB PDB:3IM1 PDB:3IM2
PDBsum:3HIB PDBsum:3IM1 PDBsum:3IM2 ProteinModelPortal:P32639
SMR:P32639 DIP:DIP-850N IntAct:P32639 MINT:MINT-606933
STRING:P32639 PaxDb:P32639 EnsemblFungi:YER172C GeneID:856919
KEGG:sce:YER172C CYGD:YER172c OMA:RDTHESS EvolutionaryTrace:P32639
NextBio:983377 Genevestigator:P32639 GermOnline:YER172C
GO:GO:0000388 Uniprot:P32639
Length = 2163
Score = 268 (99.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 91/286 (31%), Positives = 142/286 (49%)
Query: 701 QIVGMSATMPNVAAVADWLQAA-----LYETNFRPVPLEEYIKVGNAIYSKKMDVVRTIL 755
+I+G+SAT+PN V +L+ ++++FRP PL + G K+ + ++ L
Sbjct: 666 RIIGLSATLPNYEDVGRFLRVPKEGLFYFDSSFRPCPLSQQF-CG----IKERNSLKK-L 719
Query: 756 TAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV-SKFLKK---FSINVH 811
A N D E E + EG+ +++F SRK TA + +KF ++ + +
Sbjct: 720 KAMN------DACYEKVLESINEGNQIIVFVHSRKETSRTATWLKNKFAEENITHKLTKN 773
Query: 812 SSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
+ S+ I T A + L DP L + + SG+ HHAGLT +R + E + GL++
Sbjct: 774 DAGSKQILKTEAANVL-------DPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQ 826
Query: 872 VLTATSTLAAGVNLPARRVIFR-----QPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGES 925
VL T+TLA GVNLPA VI + P G + + QM GRAGR DT GE
Sbjct: 827 VLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEG 886
Query: 926 MLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGI 971
++I V+ + +LN+ P +S+ + + EVVAG I
Sbjct: 887 IIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLN---AEVVAGNI 929
Score = 121 (47.7 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 91/379 (24%), Positives = 157/379 (41%)
Query: 451 VLIVHERKLDISSQGIDSITSDS-PTNVIKKPVGNEKSDEAGTPSSSGMLKD--CLDLSS 507
V+ + + K D SS+ + ++T S P K+ + DE P+ S + D +++S
Sbjct: 426 VIDLEKIKFDESSK-LMTVTKVSLPEGSFKRV--KPQYDEIHIPAPSKPVIDYELKEITS 482
Query: 508 WLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LP + + L P Q + H N++ CA T +GK+ +A + +L+ L
Sbjct: 483 -LPDWCQEAFPSSETTSLNPIQSKVFHA-AFEGDSNMLICAPTGSGKTNIALLTVLKALS 540
Query: 568 -----STGKMAL------LVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616
T K+ L + P ++ E+ + L LG V G+ D
Sbjct: 541 HHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQRRLAFLGIKVAELTGDSRLSRKQID 600
Query: 617 -TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAX 675
T V V T EK + + + +++IDE+H++ D +RG +A+
Sbjct: 601 ETQVLVSTPEKWDITTRNSNNLAIVELVRLLIIDEIHLLHD-DRGPVLESIVARTFWASK 659
Query: 676 XXXXXXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQAA-----LYETNFRP 730
P +I+G+SAT+PN V +L+ ++++FRP
Sbjct: 660 YGQEY---------------P----RIIGLSATLPNYEDVGRFLRVPKEGLFYFDSSFRP 700
Query: 731 VPLEEY---IKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCS 787
PL + IK N++ KK L A N D E E + EG+ +++F
Sbjct: 701 CPLSQQFCGIKERNSL--KK-------LKAMN------DACYEKVLESINEGNQIIVFVH 745
Query: 788 SRKGCESTARHV-SKFLKK 805
SRK TA + +KF ++
Sbjct: 746 SRKETSRTATWLKNKFAEE 764
Score = 74 (31.1 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 33/131 (25%), Positives = 51/131 (38%)
Query: 780 HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLE 839
+S +F SRK C A KF K ++ + + E I I+ L D L
Sbjct: 1579 NSSSVFLPSRKDCMEVASAFMKFSKAIEWDMLNVEEE--QIVPYIEKLT------DGHLR 1630
Query: 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGR 899
L GV + G+ + +V+ Y G V VL + +A VI +G
Sbjct: 1631 APLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKDCSAFA-CKTDEVII----LGT 1685
Query: 900 DFIDGTRYRQM 910
+ DG ++ M
Sbjct: 1686 NLYDGAEHKYM 1696
Score = 55 (24.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 28/115 (24%), Positives = 47/115 (40%)
Query: 1158 VALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVS--VFCERLG--WYDLEG 1213
V L+ LV E+ +E+ +T V + A S +S + G ++ ++
Sbjct: 1807 VETCLNDLV-ESSFIEIDDTEAEVTAEVNGGDDEATEIISTLSNGLIASHYGVSFFTIQS 1865
Query: 1214 LIAKFQNRVSFG----VRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASIS 1264
++ N + V + VE ++P KG RA L K R PL E + S
Sbjct: 1866 FVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRA-LLVKLSKRLPLRFPEHTSS 1919
Score = 42 (19.8 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 1188 LQENAGRFASMVSVFCERLGW 1208
+ +NAGR + C + GW
Sbjct: 1101 IHQNAGRLLRAMFEICLKRGW 1121
Score = 37 (18.1 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 1674 LEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHN 1706
LEK+++ S A A G W + +N
Sbjct: 1502 LEKKIRFVCLSNCLANARDFGEWAGMTKSNIYN 1534
>SGD|S000003586 [details] [associations]
symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
"ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
GermOnline:YJL050W Uniprot:P47047
Length = 1073
Score = 203 (76.5 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 58/178 (32%), Positives = 90/178 (50%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDI-TSAIDALRRCPAGLDPVLEE 840
V++F S++ CE A +SK N I +AI L L P ++
Sbjct: 409 VIVFSFSKRDCEELALKMSKL----DFNSDDEKEALTKIFNNAIALLPETDREL-PQIKH 463
Query: 841 TLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI 897
LP G+ HH+GL +EV+E +++G ++VL AT T + G+N+PA+ V+F R
Sbjct: 464 ILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK 523
Query: 898 --GRDF--IDGTRYRQMAGRAGRTGIDTKG-ESMLICKPEEVKKIMGLLNESCPPLHS 950
G+ F + G Y QM+GRAGR G+D +G M+I + E + G++ L S
Sbjct: 524 WDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDS 581
Score = 84 (34.6 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 37/147 (25%), Positives = 72/147 (48%)
Query: 517 YKKRGISKLYPWQVECLHVDGV--LQR-RNLVYCASTSAGKSFVAEILMLRRLISTGKMA 573
+K+ ++ YP+ ++ + + R +++ A TSAGK+ VAE + + L + ++
Sbjct: 137 HKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRV- 195
Query: 574 LLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNR 633
+ P ++ +K + E+L E G V G+ ++ D V T E S++ R
Sbjct: 196 IYTSPIKALSNQK--YRELLAE-FG-DVGLMTGDI---TINPDAGCLVMTTEILRSMLYR 248
Query: 634 MLEEGRLSEIGIIVIDELHMVADQNRG 660
E R E+ ++ DE+H + D+ RG
Sbjct: 249 GSEVMR--EVAWVIFDEVHYMRDKERG 273
Score = 78 (32.5 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 700 LQIVGMSATMPNVAAVADWL-----QAA-LYETNFRPVPLEEYI--KVGNAIY 744
++ V +SAT+PN A+W+ Q + TNFRP PL+ Y+ G+ IY
Sbjct: 287 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIY 339
Score = 50 (22.7 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1897 MVEFKMSNEDIYGGNAEVDHCK-INARD 1923
+VE ++ +D YG A VD K IN R+
Sbjct: 679 LVEISVNGKDNYGWGAVVDFAKRINKRN 706
Score = 45 (20.9 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 18/81 (22%), Positives = 38/81 (46%)
Query: 55 NSQDDGHTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQAL----LSDQAQPQATQKVISR 110
++QD H ++ E N ++ +K ++KN+ + L+D + +A+++V +
Sbjct: 37 HTQDKKHGLEEEKEEHEENNSENKKIKSNKSKTEDKNKKVVVPVLADSFEQEASREVDA- 95
Query: 111 CSSKEGNSEVGCHMKDGSAHI 131
S NSE +DG +
Sbjct: 96 -SKGLTNSETLQVEQDGKVRL 115
>WB|WBGene00012342 [details] [associations]
symbol:mtr-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0040011 InterPro:IPR018247
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0040020 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0040022 GO:GO:0008026 eggNOG:COG4581 EMBL:Z70271 PIR:T26282
RefSeq:NP_501757.1 ProteinModelPortal:Q23223 SMR:Q23223
MINT:MINT-6670291 STRING:Q23223 PaxDb:Q23223 EnsemblMetazoa:W08D2.7
GeneID:177824 KEGG:cel:CELE_W08D2.7 CTD:177824 WormBase:W08D2.7
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 InParanoid:Q23223
KO:K12598 OMA:ENFQKAM NextBio:898538 InterPro:IPR025696
Pfam:PF13234 Uniprot:Q23223
Length = 1026
Score = 207 (77.9 bits), Expect = 1.7e-17, Sum P(5) = 1.7e-17
Identities = 64/177 (36%), Positives = 90/177 (50%)
Query: 761 GGKDPD-HIVELCDEVVQ-EGHSVLIFCSSRKGCESTARHVSKFLKKFSINV-HSSDSEF 817
GG D +++++ V +G + ++F SRK CES A +S LK N H
Sbjct: 353 GGTQGDSNVLKIIRSVASNDGLNCIVFSFSRKECESYA--IS--LKDMDFNKDHEKGMVK 408
Query: 818 IDITSAIDALRRCPAGLDPVLE--ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTA 875
SAI L L +L L G+ HH+GL +E +E + +GLV+VL A
Sbjct: 409 SVYESAIAQLSPEDQKLPQILNILPLLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFA 468
Query: 876 TSTLAAGVNLPARRVIFRQPRI--GRD--FIDGTRYRQMAGRAGRTGIDTKGESMLI 928
T T + G+N+PAR V+F R G D +I Y QMAGRAGR G D +G +L+
Sbjct: 469 TETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRGKDDRGTVILM 525
Score = 112 (44.5 bits), Expect = 1.7e-17, Sum P(5) = 1.7e-17
Identities = 38/141 (26%), Positives = 67/141 (47%)
Query: 523 SKLYPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579
+K YP+Q++ +L ++++ A TSAGK+ VA + + L ++ + P
Sbjct: 119 AKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRV-IYTSPI 177
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR 639
++ +K LE + +G G +L D S V T E S++ R E
Sbjct: 178 KALSNQKYRELEEEFKDVGLMT-------GDVTLNPDASCLVMTTEILRSMLYRGSEI-- 228
Query: 640 LSEIGIIVIDELHMVADQNRG 660
+ E+G +V DE+H + D+ RG
Sbjct: 229 MKEVGWVVYDEIHYMRDKERG 249
Score = 61 (26.5 bits), Expect = 1.7e-17, Sum P(5) = 1.7e-17
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 705 MSATMPNVAAVADWLQAALYE------TNFRPVPLEEYI 737
+SAT+PN A W+ + + T++RP PL+ +I
Sbjct: 268 LSATIPNARQFAQWVASIKQQPVNVVYTDYRPTPLQHWI 306
Score = 40 (19.1 bits), Expect = 1.7e-17, Sum P(5) = 1.7e-17
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 2048 YVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAAD 2088
++E L RKR L ++ + N + + + +V C+ SA+D
Sbjct: 832 HLEELNNRKRVLRRLGYLGNDD-ALVLKGSV--ACELSASD 869
Score = 38 (18.4 bits), Expect = 1.7e-17, Sum P(5) = 1.7e-17
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 1658 VSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMR 1701
VSWI+ + + E+ K+ A+ + W+N+MR
Sbjct: 568 VSWIINNSFHQFQSYAKIPEIDKKCVQVERKIASFNFPWENEMR 611
>WB|WBGene00008502 [details] [associations]
symbol:skih-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 EMBL:Z68341
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC
GeneTree:ENSGT00690000102154 PIR:T20487 RefSeq:NP_502084.2
ProteinModelPortal:Q19103 SMR:Q19103 STRING:Q19103 PaxDb:Q19103
EnsemblMetazoa:F01G4.3 GeneID:178017 KEGG:cel:CELE_F01G4.3
UCSC:F01G4.3 CTD:178017 WormBase:F01G4.3 InParanoid:Q19103
NextBio:899374 Uniprot:Q19103
Length = 1266
Score = 208 (78.3 bits), Expect = 2.8e-17, Sum P(3) = 2.8e-17
Identities = 53/159 (33%), Positives = 80/159 (50%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVL--E 839
+++F SRK C+ A+ ++ + V + + L+ L VL
Sbjct: 565 MVVFVFSRKRCDENAQMLASM--NLTTEVEKQHVRLF-FSQCVQRLKGSDKELPQVLTMR 621
Query: 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF----RQP 895
+ G A HH+G+ +EVVE ++KG V++L AT T A GVN+PAR V+F +
Sbjct: 622 DLCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSIMKHD 681
Query: 896 RIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEV 934
R ++ Y QMAGRAGR G+D G ++ICK V
Sbjct: 682 GTERRMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDSTV 720
Score = 89 (36.4 bits), Expect = 2.8e-17, Sum P(3) = 2.8e-17
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL------QAALYETNFRPVPLEEYIKVGNAIYSKKMD 749
PAH ++IV +SAT+PN ADW+ + + T+ RPVPLE ++ G ++K D
Sbjct: 427 PAH-VKIVMLSATVPNCVEFADWVGRIKNRKINVISTDRRPVPLEHFLYTGQDGKTQK-D 484
Query: 750 VVRTI 754
+ + I
Sbjct: 485 LFKII 489
Score = 70 (29.7 bits), Expect = 2.8e-17, Sum P(3) = 2.8e-17
Identities = 34/144 (23%), Positives = 64/144 (44%)
Query: 522 ISKLYPWQVECLHVDGVL--QR-RNLVYCASTSAGKSFVAEILMLRRLISTGKM-ALLVL 577
+++ YP+ ++ VL +R +L A TSAGK+ VAE + L K A+
Sbjct: 285 MARKYPFSLDPFQQSSVLCMERGESLFVAAHTSAGKTVVAEYAIA--LCQAHKTRAVYTS 342
Query: 578 PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEE 637
P ++ +K + + +G G L + + + T E S++ E
Sbjct: 343 PIKALSNQKFRDFKQIFGDVGLVT-------GDIQLHPEAACLIMTTEILRSMLYNGSEV 395
Query: 638 GRLSEIGIIVIDELHMVADQNRGY 661
R ++ +V DE+H + ++ RG+
Sbjct: 396 IR--DLEWVVFDEVHYINNEERGH 417
>UNIPROTKB|Q10701 [details] [associations]
symbol:helY "Probable helicase HelY" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842578 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:G70767 RefSeq:NP_216608.1 RefSeq:NP_336620.1
RefSeq:YP_006515507.1 ProteinModelPortal:Q10701 SMR:Q10701
PRIDE:Q10701 EnsemblBacteria:EBMYCT00000003887
EnsemblBacteria:EBMYCT00000069683 GeneID:13316898 GeneID:887736
GeneID:924573 KEGG:mtc:MT2153 KEGG:mtu:Rv2092c KEGG:mtv:RVBD_2092c
PATRIC:18126496 TubercuList:Rv2092c HOGENOM:HOG000245391 KO:K03727
OMA:ANESAWQ ProtClustDB:CLSK791623 Uniprot:Q10701
Length = 906
Score = 206 (77.6 bits), Expect = 6.1e-17, Sum P(4) = 6.1e-17
Identities = 69/191 (36%), Positives = 98/191 (51%)
Query: 783 LIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCP--AGLD-PVL- 838
+ F SR GC++ V++ L+ + + +S+ E I ID RC A D VL
Sbjct: 276 ITFVFSRAGCDAA---VTQCLRS-PLRL-TSEEERARIAEVID--HRCGDLADSDLAVLG 328
Query: 839 ----EETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF-R 893
E L G+A HHAG+ R VE + GLV+ + AT TLA G+N+PAR V+ R
Sbjct: 329 YYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLER 388
Query: 894 QPRI-GRDFIDGT--RYRQMAGRAGRTGIDTKGESMLICKPE-EVKKIMGLLNESCPPLH 949
+ G + T Y Q+ GRAGR GID +G +++I PE E ++ GL + PL
Sbjct: 389 LVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLR 448
Query: 950 SCLSEDKNGMT 960
S + N MT
Sbjct: 449 SSFAPSYN-MT 458
Score = 90 (36.7 bits), Expect = 6.1e-17, Sum P(4) = 6.1e-17
Identities = 32/124 (25%), Positives = 57/124 (45%)
Query: 539 LQR-RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597
L+R ++ CA T AGK+ V E + ++ G P ++ +K H ++
Sbjct: 29 LERGHGVLVCAPTGAGKTVVGEFAV-HLALAAGSKCFYTTPLKALSNQK--HTDLT---- 81
Query: 598 GRHVRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656
R+ R G G S+ + V V T E +++ + L + +V+DE+H +AD
Sbjct: 82 ARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNML--YADSPALQGLSYVVMDEVHFLAD 139
Query: 657 QNRG 660
+ RG
Sbjct: 140 RMRG 143
Score = 70 (29.7 bits), Expect = 6.1e-17, Sum P(4) = 6.1e-17
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNF-----RPVPLEEYIKVGNAIY 744
+++V +SAT+ N W+Q +T RPVPL +++ VG ++
Sbjct: 157 VRVVSLSATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMF 206
Score = 39 (18.8 bits), Expect = 6.1e-17, Sum P(4) = 6.1e-17
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 1935 LAADYSQIELRLMAHFSK----DPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQ 1990
L A S++E R A S+ A L + GD+ T+ R G + +++RD
Sbjct: 521 LRARVSELE-RAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDD 579
Query: 1991 TKRLI 1995
+ L+
Sbjct: 580 PRPLV 584
>TAIR|locus:2020573 [details] [associations]
symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
Uniprot:B9DFG3
Length = 1171
Score = 203 (76.5 bits), Expect = 6.4e-17, Sum P(5) = 6.4e-17
Identities = 64/194 (32%), Positives = 98/194 (50%)
Query: 785 FCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRC-PAGLDPVLEETLP 843
F +R+GC++ ++V F D E ++ A+ R P + E+ L
Sbjct: 443 FIFNRRGCDAAVQYVENFQLL-------DDCEKSEVELALKKFRVLYPDAVRESAEKGLL 495
Query: 844 SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ--PRIGRDF 901
G+A HHAG + +E +++GLV+V+ AT TLAAG+N+PAR + + G +
Sbjct: 496 RGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNER 555
Query: 902 ID-G-TRYRQMAGRAGRTGIDTKGESMLICKP-EEVKKIMGLLNESCPPLHSCLSEDKNG 958
I+ G QMAGRAGR GID KG ++L+ E ++ L+ PL S + G
Sbjct: 556 IELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTASY-G 614
Query: 959 MTHAILEVVAGGIV 972
M +L +VAG V
Sbjct: 615 M---VLNLVAGSKV 625
Score = 96 (38.9 bits), Expect = 6.4e-17, Sum P(5) = 6.4e-17
Identities = 38/153 (24%), Positives = 69/153 (45%)
Query: 512 EICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK 571
E+ SIY R I K + L ++ L+ ++V A TS+GK+ +AE + ++ G+
Sbjct: 146 ELISIYDFR-IDKF-----QRLAIEAFLRGSSVVVSAPTSSGKTLIAEAAAVST-VAKGR 198
Query: 572 MALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLV 631
P ++ +K E G G ++ KD + + T E +++
Sbjct: 199 RLFYTTPLKALSNQKFREFR---ETFGDDNVGLL--TGDSAINKDAQIVIMTTEILRNML 253
Query: 632 NR---MLEEGR-LSEIGIIVIDELHMVADQNRG 660
+ M G L + IV+DE+H ++D +RG
Sbjct: 254 YQSVGMASSGTGLFHVDAIVLDEVHYLSDISRG 286
Score = 56 (24.8 bits), Expect = 6.4e-17, Sum P(5) = 6.4e-17
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 700 LQIVGMSATMPNVAAVADWL-----QAALYETNFRPVPLEEYIKVGNAI 743
+Q++ +SAT+ N +A W+ + L + RPVPL Y +++
Sbjct: 300 VQLICLSATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSL 348
Score = 55 (24.4 bits), Expect = 6.4e-17, Sum P(5) = 6.4e-17
Identities = 36/168 (21%), Positives = 69/168 (41%)
Query: 1514 DIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVL 1573
D+ +DK +E+ G L+ + G W S +N+P + S +D L N
Sbjct: 863 DMQWDKLAESELGSLWRLEGSLETWSWS----LNVP--VLSSLSDEDEVLHMSEEYDNAA 916
Query: 1574 TP-EHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSL 1632
+ Q I + K++ R+ +K N + ++ +K +R L+
Sbjct: 917 QKYKEQRSKISRLKKKMSRSEGFREYKKILENANLTVEKMKRLKARSRR-----LINRLE 971
Query: 1633 GLENVG-SSFLLLSPV-HLKDGIDMCIVSWILWPDDERSSNPNLEKEV 1678
+E G F+ +S V H +D I + +++P E ++ E E+
Sbjct: 972 QIEPSGWKDFMRISNVIHESRALD--INTHLIFPLGETAAAIRGENEL 1017
Score = 46 (21.3 bits), Expect = 6.4e-17, Sum P(5) = 6.4e-17
Identities = 20/95 (21%), Positives = 44/95 (46%)
Query: 1250 AGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKK-IKNGARKIVLEKAEEAR 1308
A + + I + IS+ +A+ + S + A+ ++ V K+ ++ RK E+
Sbjct: 672 AEIDNKIEILSSEISD--EAIDKKSRKLLSARDYKEITVLKEELREEKRKRA-EQRRRME 728
Query: 1309 IAAFSAFKSLGLNVPQFSRPILSTATENSTGEEEA 1343
+ F A K L + + + P + ++S G E++
Sbjct: 729 LERFLALKPLLKGMEEGNLPFICLEFKDSEGREQS 763
Score = 43 (20.2 bits), Expect = 9.8e-16, Sum P(5) = 9.8e-16
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 1671 NPNLEKEVKKRLSSEAAAAANR------SGRWKNQMR 1701
N NL E KRL + + NR SG WK+ MR
Sbjct: 948 NANLTVEKMKRLKARSRRLINRLEQIEPSG-WKDFMR 983
Score = 42 (19.8 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 1194 RFASMVSVFCERLGWYDL-------EGLIAKFQNRVSFGVRAEIVELTTI-PYVKGSRAR 1245
+F+ MV + L W ++ EG +A+ R + + A+I +L I P ++ S A
Sbjct: 1098 QFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRR-TIDLLAQIPKLPDIDPVLQRSAAA 1156
Query: 1246 A 1246
A
Sbjct: 1157 A 1157
>WB|WBGene00013189 [details] [associations]
symbol:Y54E2A.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AL032646 RefSeq:NP_497060.2
ProteinModelPortal:Q9XWI1 SMR:Q9XWI1 PaxDb:Q9XWI1
EnsemblMetazoa:Y54E2A.4 GeneID:190256 KEGG:cel:CELE_Y54E2A.4
UCSC:Y54E2A.4 CTD:190256 WormBase:Y54E2A.4 Uniprot:Q9XWI1
Length = 2017
Score = 287 (106.1 bits), Expect = 7.9e-17, Sum P(3) = 7.9e-17
Identities = 118/438 (26%), Positives = 196/438 (44%)
Query: 541 RRNLVYCASTSAGKSFVAEILMLRRLI----STGKMA------LLVLPYVSICAEKAEHL 590
+ NL+ CA T AGK+ +A + +L + S G + + + P ++ E E
Sbjct: 327 KENLLICAPTGAGKTNIAMLTILNTIHEHQNSRGDIMKDDFKIIYIAPMKALATEMTESF 386
Query: 591 EVLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRL-SEIGIIVI 648
L PLG V+ G+ Q + DT + V T EK + + + + L + + +++I
Sbjct: 387 GKRLAPLGLKVKELTGDTQLSRNEVADTQMLVLTPEKWDVITRKSTSDNSLINVVRLLII 446
Query: 649 DELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMSAT 708
DE+H++ D+ R G++IVG+SAT
Sbjct: 447 DEVHLLHDERGPVIETLVARTLRQVEMSQS--------------------GIRIVGLSAT 486
Query: 709 MPNVAAVADWLQAALY------ETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGG 762
+PN VA +L+ Y + FRPVPL + +G ++K R LT +
Sbjct: 487 LPNFIDVARFLRVNPYKGLFFFDGRFRPVPLTQKF-IG----TRKAGNFRDNLTL--MDN 539
Query: 763 KDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSI--------NVHSSD 814
D +V+ V+ GH VL+F +R G TA+ F + S+ +
Sbjct: 540 VCYDEVVDF----VKRGHQVLVFVHTRNG---TAKLGEAFCARASVLGQMDLFLPKDRAS 592
Query: 815 SEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874
S++I AI+ R A + P+ + G+ HHAGL ++R ++E C+ +G V VL
Sbjct: 593 SKYIQADKAINICRN-RAQISPLFQR----GMGIHHAGLCRQDRILMERCFAEGHVSVLF 647
Query: 875 ATSTLAAGVNLPARRVIFRQPRIGRD----FID-GTR-YRQMAGRAGRTGIDTKGESMLI 928
T+TLA GVNLPA V+ + + F D G +Q+ GRAGR + +G ++I
Sbjct: 648 CTATLAWGVNLPAHAVVIKGTDVFDAEKGVFTDLGVLDVQQIFGRAGRPQFENEGHGIII 707
Query: 929 CKPEEVKKIMGLLNESCP 946
+++ K + +L P
Sbjct: 708 TTRDKIDKYLTMLVHQNP 725
Score = 186 (70.5 bits), Expect = 6.2e-11, Sum P(3) = 6.2e-11
Identities = 83/300 (27%), Positives = 129/300 (43%)
Query: 700 LQIVGMSATMPNVAAVADWL---QAALYE--TNFRPVPLEEYIK-VGNAIYSKKMDVVRT 753
++++G+S + N VA+WL A Y + RPVP+ +I+ Y +M ++
Sbjct: 1340 VRLLGLSTALANAGDVAEWLGIPDEACYNFRPSVRPVPISVHIQGFPGQHYCPRMGLMNK 1399
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813
A L VLIF SSR+ TA L
Sbjct: 1400 PAYKAIL--------------TYSPRKPVLIFVSSRRQTRLTALAFVNLLIADHNPKQWL 1445
Query: 814 DSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVL 873
+ + +++ + A++ D L+ TLP G+ HHAGL+ ER +VE + + ++VL
Sbjct: 1446 NMDMLELEDLMAAIK------DENLKLTLPFGIGMHHAGLSAHERAIVEQLFIEKKIQVL 1499
Query: 874 TATSTLAAGVNLPARRVIFRQPRI--GRD--FIDG--TRYRQMAGRAGRTGIDTKGESML 927
AT+TLA G+N PA VI + G+ ++D T QM GRAGR D +++
Sbjct: 1500 IATATLAWGINCPAHLVIVKGTEYFDGKKGKYVDFPVTDVLQMMGRAGRPQFDDSAVAVI 1559
Query: 928 ICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
+ + L E P S L N H E+ AG I + + I Y+ T L
Sbjct: 1560 YVQDAKKTFYKKFLYEPFPVESSLLPVLPN---HVNAEISAGTI-DSKQAIVEYLSKTYL 1615
Score = 87 (35.7 bits), Expect = 6.2e-11, Sum P(3) = 6.2e-11
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 548 ASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEP-LGRHVRSYY 605
A T +GK+ AE+ M R L G + + P S+ E+ + + E +G V
Sbjct: 1202 APTGSGKTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRERVDDWKKKFEDGMGYRVVEVS 1261
Query: 606 GNQGGGSLPKD---TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
G+ P++ +S+ + T EK + + + +G+IV+DE+H++ +RG
Sbjct: 1262 GDVTPD--PEELAASSILITTPEKWDGISRSWATREYVRRVGLIVLDEVHLLG-VDRG 1316
Score = 45 (20.9 bits), Expect = 7.1e-16, Sum P(4) = 7.1e-16
Identities = 31/143 (21%), Positives = 61/143 (42%)
Query: 908 RQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCP---PLHSCLSEDKNG-MTHAI 963
+Q+ GRAGR + +G ++I +++ K + +L P ++ L ++ N +
Sbjct: 687 QQIFGRAGRPQFENEGHGIIITTRDKIDKYLTMLVHQNPIESQFYARLHDNLNAEVALGT 746
Query: 964 LEVVAGGIVQTAEDIHRYVRCT--------LLNSTK--P-----FQDVVKSAQDSLRWLC 1008
+ V G V+ + Y R N+ + P F +V++ A L
Sbjct: 747 VSTVDEG-VEWLTYTYMYTRALKNPMAYGIAYNAIERDPNLRDHFGNVIREAAMQLD--- 802
Query: 1009 HRKFLEWNEDTKLYSTTPLGRAA 1031
K + ++ T+ ++T LGR A
Sbjct: 803 QNKMIRFDMATEYLNSTDLGRIA 825
Score = 42 (19.8 bits), Expect = 7.9e-17, Sum P(3) = 7.9e-17
Identities = 34/139 (24%), Positives = 51/139 (36%)
Query: 909 QMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVA 968
QM GRAGR D +++ + + L E P S L N H E+ A
Sbjct: 1541 QMMGRAGRPQFDDSAVAVIYVQDAKKTFYKKFLYEPFPVESSLLPVLPN---HVNAEISA 1597
Query: 969 GGIVQTAEDIHRYVRCTLLNS---TKPF-----QD--------VVKSAQDSLRWLCHRKF 1012
G I + + I Y+ T L P +D + K DS+ L +
Sbjct: 1598 GTI-DSKQAIVEYLSKTYLYRRLFANPNYYGLEEDSEEAMLKFITKIVDDSVAELLASEC 1656
Query: 1013 LEWNEDTKLYSTTPLGRAA 1031
+ + + + TP GR A
Sbjct: 1657 IHVDSEQDVIKPTPCGRIA 1675
Score = 39 (18.8 bits), Expect = 7.9e-17, Sum P(3) = 7.9e-17
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 125 KDGSAHIPESLELKQFPT 142
++G + PE+L L Q P+
Sbjct: 45 QEGFSEAPEALSLPQVPS 62
Score = 38 (18.4 bits), Expect = 7.1e-16, Sum P(4) = 7.1e-16
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 2021 KIKSFKSSFP-GVASWLHVAVSSCHQKGYVESL 2052
K ++ K + P G+ +H A S H++ VE L
Sbjct: 1460 KDENLKLTLPFGIG--MHHAGLSAHERAIVEQL 1490
>TAIR|locus:2026001 [details] [associations]
symbol:MTR4 "homolog of yeast MTR4" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
Genevestigator:Q9XIF2 Uniprot:Q9XIF2
Length = 988
Score = 220 (82.5 bits), Expect = 1.1e-16, Sum P(4) = 1.1e-16
Identities = 65/198 (32%), Positives = 103/198 (52%)
Query: 762 GKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDI 820
G++ D I +L ++Q + V++F S+K CE+ A +SK + + ++ F
Sbjct: 303 GEESD-IFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMVLNSDDEKDAVETIF--- 358
Query: 821 TSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS 877
SAID L L P + LP G+ HH+GL +EV+E +++GL++ L AT
Sbjct: 359 ASAIDMLSDDDKKL-PQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE 417
Query: 878 TLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPE- 932
T + G+N+PA+ V+F R G F + Y QM+GRAGR GID +G +L+ +
Sbjct: 418 TFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKM 477
Query: 933 EVKKIMGLLNESCPPLHS 950
E +L S L+S
Sbjct: 478 EPAVAKSMLKGSADSLNS 495
Score = 78 (32.5 bits), Expect = 1.1e-16, Sum P(4) = 1.1e-16
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 701 QIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYI--KVGNAIY 744
+ V +SAT+PN ADW+ + T++RP PL+ Y+ GN +Y
Sbjct: 206 RFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYVFPAGGNGLY 257
Score = 66 (28.3 bits), Expect = 1.1e-16, Sum P(4) = 1.1e-16
Identities = 33/149 (22%), Positives = 63/149 (42%)
Query: 515 SIYKKRGISKLYPWQVECLHVDGV--LQR-RNLVYCASTSAGKSFVAEILMLRRLISTGK 571
S++ K +K +P+ ++ + + L +++ A TSAGK+ VA + L +
Sbjct: 54 SVHNKPP-AKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSL-KENQ 111
Query: 572 MALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLV 631
+ P ++ +K + +G G ++ + S V T E S+
Sbjct: 112 RVIYTSPIKALSNQKYRDFKEEFSDVGLMT-------GDVTIDPNASCLVMTTEILRSMQ 164
Query: 632 NRMLEEGRLSEIGIIVIDELHMVADQNRG 660
+ E R E+ I+ DE+H + D RG
Sbjct: 165 YKGSEIMR--EVAWIIFDEVHYMRDSERG 191
Score = 40 (19.1 bits), Expect = 1.1e-16, Sum P(4) = 1.1e-16
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 2019 KEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKF 2064
K K+ K L V S + + LK RKR L ++ +
Sbjct: 764 KLKVLQMKEELIAKIKSLKKTVRSSTALAFKDELKARKRVLRRLGY 809
>UNIPROTKB|D4AE49 [details] [associations]
symbol:D4AE49 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR012961 Pfam:PF00271 Pfam:PF08148 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00690000102230 InterPro:IPR025696 Pfam:PF13234
IPI:IPI00776783 PRIDE:D4AE49 Ensembl:ENSRNOT00000060695
ArrayExpress:D4AE49 Uniprot:D4AE49
Length = 764
Score = 235 (87.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 70/216 (32%), Positives = 110/216 (50%)
Query: 761 GGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G K P ++ ++ +++ V+IF S+K CE+ A ++K F+ + E +
Sbjct: 111 GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKL--DFNTDEEKKMVEEV- 167
Query: 820 ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
+AID L L P +E LP G+ HH GL +E +E + +GL++ L AT
Sbjct: 168 FNNAIDCLSDEDKKL-PQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT 226
Query: 877 STLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
T A G+N+PAR V+F R G+DF I Y QM+GRAGR G+D +G +L+ E
Sbjct: 227 ETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD-E 285
Query: 933 EVKKIMG--LLNESCPPLHSCLSEDKNGMTHAILEV 966
++ +G LL + DK THA++ +
Sbjct: 286 KMSPTIGKQLLKKG--------QGDKLSATHALVYI 313
Score = 67 (28.6 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 703 VGMSATMPNVAAVADWL-----QAA--LYETNFRPVPLEEYI 737
V +SAT+PN A+W+ Q +Y T++RP PL+ YI
Sbjct: 24 VFLSATIPNARQFAEWICHLHKQPCHVIY-TDYRPTPLQHYI 64
>POMBASE|SPCC550.03c [details] [associations]
symbol:SPCC550.03c "Ski complex RNA helicase Ski2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
[GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
NextBio:20800023 Uniprot:O59801
Length = 1213
Score = 226 (84.6 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 58/158 (36%), Positives = 87/158 (55%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPV--L 838
V++F S+K CE +V + +N H SE + I A+ L++ L + +
Sbjct: 553 VIVFVFSKKRCEE---YVDTLTNR-DLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRM 608
Query: 839 EETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR--QPR 896
E L G+A HH GL +E+VE +++GLV+VL AT T A GVN+PA+ V+F Q
Sbjct: 609 REMLSRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKH 668
Query: 897 IGRDFID--GTRYRQMAGRAGRTGIDTKGESMLICKPE 932
GR+F D Y Q +GRAGR G+D G +++ + E
Sbjct: 669 DGRNFRDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSE 706
Score = 70 (29.7 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL----QAALY--ETNFRPVPLEEYIKV 739
P H + ++ +SAT+PN A W+ + +Y T RPVPLE Y+ V
Sbjct: 415 PPH-VTLILLSATVPNTKEFASWVGRTKKKNIYVISTLKRPVPLEHYLWV 463
Score = 70 (29.7 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 32/138 (23%), Positives = 61/138 (44%)
Query: 526 YPWQVECLHVDGV--LQRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSI 582
+P++++ + + L+ + V+ A+ TSAGK+ VAE + K A+ P ++
Sbjct: 277 FPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTK-AIYTSPIKAL 335
Query: 583 CAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSE 642
+K + E +G N G L + T E S++ R + + +
Sbjct: 336 SNQKFRDFKHKFEDVGILTGDVQVNPEGSCL-------LMTTEILRSMLYRGAD--LIRD 386
Query: 643 IGIIVIDELHMVADQNRG 660
+ ++ DE+H V D RG
Sbjct: 387 VEFVIFDEVHYVNDLERG 404
Score = 42 (19.8 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 1829 RHEHPIVPVIKEHRTLAK-LLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGR 1883
+HE I ++ L K + + L I S S S ++YT H+ +TA G+
Sbjct: 765 QHEEKIKSFEEKLSALKKEMSDVDLKEIKSCLLSSESFKEYTKKMHFRAITTANGK 820
Score = 38 (18.4 bits), Expect = 3.0e-16, Sum P(4) = 3.0e-16
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 1065 YLSTPINVEVEPDWELYYERFLELSALD 1092
Y+S N+E+ PD+E + EL +D
Sbjct: 1008 YISDQ-NLELLPDYEQRIKVLQELGYID 1034
>POMBASE|SPAC6F12.16c [details] [associations]
symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
pre-mRNA with aberrant 3'-ends at the site of transcription"
evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
NextBio:20802732 GO:GO:0071049 Uniprot:O14232
Length = 1117
Score = 263 (97.6 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 109/433 (25%), Positives = 198/433 (45%)
Query: 523 SKLYPWQVECLHVDGV--LQRR-NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579
++ YP+ ++ + ++R+ +++ A TSAGK+ VAE + + L ++ + P
Sbjct: 192 ARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRV-IYTSPI 250
Query: 580 VSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR 639
++ +K + E+L E G V G+ ++ D + V T E S++ R E R
Sbjct: 251 KALSNQK--YRELLAE-FG-DVGLMTGDV---TINPDATCLVMTTEILRSMLYRGSEVMR 303
Query: 640 LSEIGIIVIDELHMVADQNRGYXXXXXXXX----XRYAAXXXXXXXXXXXXXXXXXXKAD 695
E+ ++ DE+H + D+ RG +
Sbjct: 304 --EVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQ 361
Query: 696 PAHGLQIVGMSATMPNVA--AVADWLQAALYE-TNFRPVPLEEYIKVGNAIYSKKMDVVR 752
P H + + + + +D + + E +NFR E + + +A+ K+ D
Sbjct: 362 PCHVVYTDFRPTPLQHYLFPSGSDGIHLVVDEKSNFRE---ENFQRAMSALMEKQGDDPA 418
Query: 753 TILTAANL-------GG-KDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFL 803
+ T N GG K P I ++ ++ + ++ V++F S++ CE+ A +SK
Sbjct: 419 AMATKGNAKKGKTGKGGVKGPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMSKL- 477
Query: 804 KKFSINVHSSDSEFIDI-TSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEERE 859
+N + I +A++ L L P +E LP G+ HH+GL +E
Sbjct: 478 ---DMNDQTERDLVTTIFNNAVNQLSEKDREL-PQIEHILPLLRRGIGIHHSGLLPILKE 533
Query: 860 VVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAG 915
V+E +++GL++VL AT T + G+N+PA+ V+F R G+ F I G Y QM+GRAG
Sbjct: 534 VIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAG 593
Query: 916 RTGIDTKGESMLI 928
R G+D +G +L+
Sbjct: 594 RRGLDDRGIVILM 606
Score = 40 (19.1 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 23/128 (17%), Positives = 50/128 (39%)
Query: 197 GEQTTCSN-AK--NIEETQSGFIVKTGNLVPNSSQRVTDSNASLLLQASLRKCDKSSKST 253
GEQ + + AK N+++ Q N + ++ V D+ + + D S++ +
Sbjct: 61 GEQESATKRAKIENLKDNQDLIPNNDVNGIHINNSAVADTKHKPKI-GDIAADDISNEVS 119
Query: 254 LNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPGEAFWNEAIEIADGFFAHTDIGPSQIA 313
+ PE ++ ++ +E G + ++ E +E+ I P+
Sbjct: 120 IKNEGDTIPEATVADSFEQEASLQVAGKVGMTEAKSSTEEVVELRHQVRHQVSIPPNYDY 179
Query: 314 EGIADSKS 321
I+ KS
Sbjct: 180 VPISKHKS 187
>POMBASE|SPAC9.03c [details] [associations]
symbol:brr2 "U5 snRNP complex subunit Brr2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000393 "spliceosomal
conformational changes to generate catalytic conformation"
evidence=IGI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 PomBase:SPAC9.03c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681
GO:GO:0005682 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749 PIR:T39188
RefSeq:NP_593346.1 ProteinModelPortal:Q9UT24 IntAct:Q9UT24
STRING:Q9UT24 EnsemblFungi:SPAC9.03c.1 GeneID:2543676
KEGG:spo:SPAC9.03c KO:K12854 OMA:KWDVLSR OrthoDB:EOG4MD17F
NextBio:20804682 GO:GO:0046540 GO:GO:0004004 GO:GO:0000393
Uniprot:Q9UT24
Length = 2176
Score = 249 (92.7 bits), Expect = 4.0e-16, Sum P(5) = 4.0e-16
Identities = 85/264 (32%), Positives = 133/264 (50%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
+++VG+SAT+PN VA +L +++ +RP PL++ +G ++K R
Sbjct: 685 VRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEF-IG---ITEKTPFKR- 739
Query: 754 ILTAANLGGKDPDHIVELC-DEVVQEG--HSVLIFCSSRKGCESTARHV-SKFLKKFSI- 808
+ N E C ++V+Q + VLIF SRK TAR + K L++ +I
Sbjct: 740 -MQTTN----------EACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRDKALEEETIG 788
Query: 809 NVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKG 868
++ SD+ +I A + D L++ LP G A HHAG+ E+R+ E + G
Sbjct: 789 HLLRSDAASREILRA-----EADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDLFADG 843
Query: 869 LVRVLTATSTLAAGVNLPARRVIFR-----QPRIGR-DFIDGTRYRQMAGRAGRTGIDTK 922
++VL +T+TLA GVNLPA VI + P G + QM GRAGR DT
Sbjct: 844 TIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTY 903
Query: 923 GESMLICKPEEVKKIMGLLNESCP 946
GE ++I E++ + L+N+ P
Sbjct: 904 GEGIIITAHSELQYYLSLMNQQLP 927
Score = 85 (35.0 bits), Expect = 4.0e-16, Sum P(5) = 4.0e-16
Identities = 31/129 (24%), Positives = 59/129 (45%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL-------ISTGKM---ALLVLPYVSICAEKAEHLEV 592
N++ CA T AGK+ VA + +L L +S + + P ++ E +
Sbjct: 537 NILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSK 596
Query: 593 LLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDEL 651
L P V G+ Q +T + V T EK + + + + ++ + +++IDE+
Sbjct: 597 RLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEV 656
Query: 652 HMVADQNRG 660
H++ D+ RG
Sbjct: 657 HLLHDE-RG 664
Score = 45 (20.9 bits), Expect = 4.0e-16, Sum P(5) = 4.0e-16
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 281 NSIFSPGEAFW-NEAIEIADGFFAHTDIGPSQI 312
N +F+ G N+A+++ +G F T G +I
Sbjct: 452 NYVFTEGSRLMSNKAVKLPEGSFRRTGKGYEEI 484
Score = 44 (20.5 bits), Expect = 4.0e-16, Sum P(5) = 4.0e-16
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 1927 PSQENWILLAADYSQIEL 1944
P +++ILLAA +S+ EL
Sbjct: 1923 PHTKSFILLAAHFSRFEL 1940
Score = 39 (18.8 bits), Expect = 4.0e-16, Sum P(5) = 4.0e-16
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 1989 DQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGV 2032
D+T I I G T E + + K K+ F S+ GV
Sbjct: 2111 DKTLLAIKKITLGRSLTTKMEFVPPAMGTLKYKLSCFSDSYMGV 2154
>TAIR|locus:2063648 [details] [associations]
symbol:HEN2 "hua enhancer 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0010093
"specification of floral organ identity" evidence=IMP] [GO:0016070
"RNA metabolic process" evidence=TAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0003002 "regionalization" evidence=RCA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0003676 GO:GO:0010093
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC005171 GO:GO:0003724 HOGENOM:HOG000163047
KO:K12598 InterPro:IPR025696 Pfam:PF13234 EMBL:BT005794
IPI:IPI00539432 PIR:B84481 RefSeq:NP_565338.1 UniGene:At.20667
ProteinModelPortal:Q9ZVW2 SMR:Q9ZVW2 IntAct:Q9ZVW2 PRIDE:Q9ZVW2
EnsemblPlants:AT2G06990.1 GeneID:815269 KEGG:ath:AT2G06990
TAIR:At2g06990 InParanoid:Q9ZVW2 OMA:TFDRVCD PhylomeDB:Q9ZVW2
ProtClustDB:CLSN2688028 ArrayExpress:Q9ZVW2 Genevestigator:Q9ZVW2
Uniprot:Q9ZVW2
Length = 995
Score = 205 (77.2 bits), Expect = 5.5e-16, Sum P(5) = 5.5e-16
Identities = 63/198 (31%), Positives = 100/198 (50%)
Query: 761 GGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDI 820
G D IV++ E ++ V+IF SR+ CE A +SK F+ + E +
Sbjct: 320 GDSDVYKIVKMIME--RKFEPVIIFSFSRRECEQHALSMSKL--DFNTDEEKEVVEQV-F 374
Query: 821 TSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS 877
+A+ L L P +E LP G+A HH+GL +E+VE +++GLV+ L AT
Sbjct: 375 NNAMQCLNEEDRSL-PAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALFATE 433
Query: 878 TLAAGVNLPARRVIFRQPRI----GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE- 932
T A G+N+PA+ V+F + +I Y QM+GRAGR G D +G +++ +
Sbjct: 434 TFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEQM 493
Query: 933 EVKKIMGLLNESCPPLHS 950
E+ + ++ PL S
Sbjct: 494 EMNTLRDMMLGKPAPLLS 511
Score = 92 (37.4 bits), Expect = 5.5e-16, Sum P(5) = 5.5e-16
Identities = 35/142 (24%), Positives = 68/142 (47%)
Query: 522 ISKLYPWQVECLHVDGV--LQRR-NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578
++K YP++++ V L+R+ +++ A TSAGK+ VAE + ++ + P
Sbjct: 74 MAKTYPFKLDPFQSVSVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDKQRV-IYTSP 132
Query: 579 YVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEG 638
++ +K L+ + +G G +L + S V T E +++ R E
Sbjct: 133 LKALSNQKYRELQHEFKDVGLMT-------GDVTLSPNASCLVMTTEILRAMLYRGSEV- 184
Query: 639 RLSEIGIIVIDELHMVADQNRG 660
L E+ ++ DE+H + D+ RG
Sbjct: 185 -LKEVAWVIFDEIHYMKDRERG 205
Score = 67 (28.6 bits), Expect = 5.5e-16, Sum P(5) = 5.5e-16
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 700 LQIVGMSATMPNVAAVADWL-----QAA-LYETNFRPVPLEEY 736
+++V +SATM N A+W+ Q + T+FRP PL+ Y
Sbjct: 219 IKMVFLSATMSNATEFAEWICYLHKQPCHVVYTDFRPTPLQHY 261
Score = 40 (19.1 bits), Expect = 5.5e-16, Sum P(5) = 5.5e-16
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 242 SLRKCDKSSKSTLNTTACYTPEPSIVKTYVRETPKSTCGNSIFSPGE 288
+L K +S S L + TPEP +T R + K C + + P +
Sbjct: 10 TLGKRKESESSKLRSDETPTPEP---RTK-RRSLKRACVHEVAVPND 52
Score = 38 (18.4 bits), Expect = 5.5e-16, Sum P(5) = 5.5e-16
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 2110 SSLAANFQMLKGRCRLLLQVHDELVLEVD 2138
+ L Q L+ R + ++ E LE+D
Sbjct: 878 NELTKPLQQLQDSARKIAEIQHECKLEID 906
>UNIPROTKB|F1N993 [details] [associations]
symbol:F1N993 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 GO:GO:0000178 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000460
GO:GO:0008026 GeneTree:ENSGT00690000102230 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 EMBL:AADN02054537 EMBL:AADN02054530
EMBL:AADN02054531 EMBL:AADN02054532 EMBL:AADN02054533
EMBL:AADN02054534 EMBL:AADN02054535 EMBL:AADN02054536
IPI:IPI00599020 Ensembl:ENSGALT00000023719 Uniprot:F1N993
Length = 1031
Score = 242 (90.2 bits), Expect = 6.8e-16, Sum P(4) = 6.8e-16
Identities = 68/200 (34%), Positives = 105/200 (52%)
Query: 761 GGKDPDHIVELCDEVVQEGHS-VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
G K P ++ ++ +++ V+IF S+K CE+ A ++K F+ + E +
Sbjct: 356 GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKL--DFNTDEEKKMVEEV- 412
Query: 820 ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
+AID L L P +E LP G+ HH GL +E +E + +GL++ L AT
Sbjct: 413 FNNAIDCLSDEDKKL-PQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT 471
Query: 877 STLAAGVNLPARRVIFRQPRI--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
T A G+N+PAR V+F G+DF I Y QM+GRAGR G+D +G +L+ E
Sbjct: 472 ETFAMGINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD-E 530
Query: 933 EVKKIMG--LLNESCPPLHS 950
++ +G LL S PL+S
Sbjct: 531 KMSPTIGKQLLKGSADPLNS 550
Score = 64 (27.6 bits), Expect = 6.8e-16, Sum P(4) = 6.8e-16
Identities = 40/214 (18%), Positives = 85/214 (39%)
Query: 462 SSQGIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSI-YKKR 520
S+ G+ D+ + + + +K S + +C+ L S + S+ + +
Sbjct: 43 SAAGLGKTRRDAEVDSSEGAISGKKPKLEDVASEDNKMGECVQLCSSMNSDTKPMCLGED 102
Query: 521 GISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSF-VAEIL---MLRRLISTGKMALLV 576
+ + C+ + G+L ++ + S + SF + E+ M R+ S + LL
Sbjct: 103 ALIRSNALMCFCVAL-GLLIKKFVYVLFSVRSLISFALTEVFNNYMFARIWSGSTITLL- 160
Query: 577 LPYVSICAEKAEHLEVLLEPL----GRHVRSYYGN-QGGGSLPKDTSV---AVCTIEKAN 628
Y A + + + P+ + R Y Q G + D ++ A C +
Sbjct: 161 -KYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLV-MTT 218
Query: 629 SLVNRMLEEGR--LSEIGIIVIDELHMVADQNRG 660
++ ML G + E+ ++ DE+H + D +G
Sbjct: 219 EILRSMLYRGSEVMREVAWVIFDEIHYMRDSEKG 252
Score = 45 (20.9 bits), Expect = 6.8e-16, Sum P(4) = 6.8e-16
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 726 TNFRPVPLEEYI 737
T++RP PL+ YI
Sbjct: 298 TDYRPTPLQHYI 309
Score = 45 (20.9 bits), Expect = 6.8e-16, Sum P(4) = 6.8e-16
Identities = 10/51 (19%), Positives = 27/51 (52%)
Query: 2043 CHQKGYVE-SLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKI 2092
C +K + +K KR L K + ++ K +++ + + +++D+I++
Sbjct: 811 CERKAQIAMDIKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEM 861
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 201 (75.8 bits), Expect = 7.3e-16, Sum P(5) = 7.3e-16
Identities = 76/251 (30%), Positives = 117/251 (46%)
Query: 783 LIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPVLE-- 839
++F S+K CE A L+ N SE + I A+ L++ L +L+
Sbjct: 583 VVFVFSKKRCEEYADS----LRSVDFNNAREKSEIHMFIDRAVGRLKKEDRELPQILKIR 638
Query: 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI-- 897
E L G+A HH GL +E +E + K LV+VL AT T A G+NLP R VIF R
Sbjct: 639 EMLGRGIAVHHGGLLPIVKECIEILFAKSLVKVLFATETFAMGLNLPTRTVIFSSMRKHD 698
Query: 898 GRDF---IDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSE 954
GR F + G + QM+GRAGR G+D G +++ + + E + LS
Sbjct: 699 GRSFRNLLPG-EFTQMSGRAGRRGLDKTGTVIVMAYDDPLSPTD--FKEVVLGTPTKLSS 755
Query: 955 DKNGMTHA-ILEVVAGGIVQTAEDI-HRY----VRCTLLNSTKPFQDVVKSAQDSLRWLC 1008
+T++ IL ++ ++ E I H + + L + K + ++ K Q S C
Sbjct: 756 QFR-LTYSMILNLLRIEALKVEEMIKHSFSENSTQVLLPENQKRYDEIKKQLQSSTITPC 814
Query: 1009 HRKFLEWNEDT 1019
+ LE E+T
Sbjct: 815 SKCSLEGTEET 825
Score = 77 (32.2 bits), Expect = 7.3e-16, Sum P(5) = 7.3e-16
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL----QAALY--ETNFRPVPLEEYIKVGNAIYSKKMD 749
P H ++ + +SAT+PN A+W+ Q +Y T RPVPLE ++ N ++ K +D
Sbjct: 426 PDH-VKYILLSATVPNTFEFANWVGRTKQKDIYVISTPKRPVPLEIFVSAKNQLF-KVVD 483
Query: 750 VVR 752
R
Sbjct: 484 ANR 486
Score = 72 (30.4 bits), Expect = 7.3e-16, Sum P(5) = 7.3e-16
Identities = 30/144 (20%), Positives = 70/144 (48%)
Query: 522 ISKLYPWQVECLHVDGV--LQRRNLVYCAS-TSAGKSFVAE--ILMLRRLISTGKMALLV 576
+++ +P++++ + V L++ + V+ A+ TSAGK+ VAE I M R ++ +
Sbjct: 282 MARTWPFELDTFQKEAVFHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTK---CIYT 338
Query: 577 LPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLE 636
P ++ +K + + + + + G + + + + T E S++ R +
Sbjct: 339 SPIKALSNQKFRDFKETFKDIDVGLIT-----GDVQINPEANCLIMTTEILRSMLYRGAD 393
Query: 637 EGRLSEIGIIVIDELHMVADQNRG 660
+ ++ ++ DE+H V D +RG
Sbjct: 394 --LIRDVEFVIFDEVHYVNDIDRG 415
Score = 56 (24.8 bits), Expect = 7.3e-16, Sum P(5) = 7.3e-16
Identities = 33/120 (27%), Positives = 51/120 (42%)
Query: 1335 ENSTGEEEAATTAPRNDKSSSFIFPVPMEHSDKPSLEANQISKKVDLESAGEKLLETSDN 1394
E T EEE PR +K + I +E ++K L + K+V L S E +E+
Sbjct: 1114 EGRTQEEEPPLITPRLEKGKAKI----LEIAEK--LLKVYVEKQVSLTSEEEDFVESKRF 1167
Query: 1395 ELSALV----EGGSITELQQ-KFDAENXXXXXXXXXXXXXEFNVNASEIKIPDTTLSVQL 1449
L+ +V G S E+ Q +AE NA+ I I D+TL +++
Sbjct: 1168 ALANVVYEWANGLSFNEIMQISVEAEGTIVRVITRLDEICREVKNAALI-IGDSTLHLKM 1226
Score = 41 (19.5 bits), Expect = 7.3e-16, Sum P(5) = 7.3e-16
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 1036 LCPEESLIVLDDLSR---AREGFVLASDLHLVYLSTPINVEVEPDWEL 1080
L +E+L +L D + E + H V L + EV WEL
Sbjct: 1038 LISDENLELLPDYEQRLQVLEAMGYIDEQHNVVLKGRVACEVNSGWEL 1085
>UNIPROTKB|H9L351 [details] [associations]
symbol:H9L351 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00640000091272 EMBL:AADN02064073
EMBL:AADN02064074 Ensembl:ENSGALT00000021750
Ensembl:ENSGALT00000036125 Uniprot:H9L351
Length = 254
Score = 214 (80.4 bits), Expect = 8.4e-16, P = 8.4e-16
Identities = 61/156 (39%), Positives = 84/156 (53%)
Query: 838 LEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR---- 893
L++ LP G A HHAG+T +R +VE + ++VL +T+TLA GVNLPA VI +
Sbjct: 34 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 93
Query: 894 -QPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSC 951
P GR + QM GRAGR DTKGE +LI E++ + LLN+ P + S
Sbjct: 94 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLP-IESQ 152
Query: 952 LSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
+ M +A E V G VQ A+D ++ T L
Sbjct: 153 MVSKLPDMLNA--ETVLGN-VQNAKDAVNWLGYTYL 185
>ASPGD|ASPL0000004985 [details] [associations]
symbol:AN6007 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
Uniprot:Q5B0C3
Length = 1293
Score = 207 (77.9 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 58/152 (38%), Positives = 79/152 (51%)
Query: 784 IFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLE--ET 841
IF S+K CE A +S + F N I I ++ L++ L +L E
Sbjct: 632 IFVFSKKRCEQNADSLSN--QDFC-NASEKSLIHITIEKSLTRLKQEDRTLPQILRLREL 688
Query: 842 LPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR--QPRIG- 898
L G+A HH GL +E+VE + K LV+VL AT T A G+NLP R V+F + G
Sbjct: 689 LSRGIAVHHGGLLPIMKEIVEILFAKTLVKVLFATETFAMGLNLPTRTVVFSGFRKHDGK 748
Query: 899 --RDFIDGTRYRQMAGRAGRTGIDTKGESMLI 928
RD + G Y QMAGRAGR G+D G +++
Sbjct: 749 GFRDLLPG-EYTQMAGRAGRRGLDNVGYVIVV 779
Score = 81 (33.6 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL----QAALY--ETNFRPVPLEEYIKVGNAIYSKKMD 749
P H + ++ +SAT+PN A W+ + +Y T RPVPLE Y+ G + K +D
Sbjct: 457 PEH-VTLILLSATVPNTQEFASWVGRTKKKDIYVISTAKRPVPLEHYLWAGKDKF-KIVD 514
Query: 750 VVRTILTAANLGGKDPDHIVELCDEV 775
+ L + G K D I+ D++
Sbjct: 515 SNKRFLES---GWKQADDIISGKDKI 537
Score = 76 (31.8 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 31/142 (21%), Positives = 67/142 (47%)
Query: 522 ISKLYPWQVECLHVDGV--LQRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLP 578
+++ +P++++ + V L+ + V+ A+ TSAGK+ VAE + K A+ P
Sbjct: 315 MAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTK-AIYTSP 373
Query: 579 YVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEG 638
++ +K + + +G + + G + + S + T E S++ R +
Sbjct: 374 IKALSNQKFRDFKNTFDDVG--ILT-----GDVQINPEASCLIMTTEILRSMLYRGAD-- 424
Query: 639 RLSEIGIIVIDELHMVADQNRG 660
+ ++ ++ DE+H V D RG
Sbjct: 425 LIRDVEFVIFDEVHYVNDLERG 446
Score = 41 (19.5 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 1057 LASDLHLVYLSTPI 1070
L S+LHL LS+P+
Sbjct: 884 LTSELHLNLLSSPV 897
Score = 40 (19.1 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2107 KPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVP 2162
+ +++A + LK C L+ H E+ + D IKE +S +++ M L L+P
Sbjct: 1047 REQANIAQSCDCLK--CPKFLK-HFEM--QRDEWQIKENISQLKQLMSDQNLQLLP 1097
>UNIPROTKB|G4N5J1 [details] [associations]
symbol:MGG_06124 "Activating signal cointegrator 1 complex
subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 EMBL:CM001233 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GO:GO:0008026 RefSeq:XP_003711991.1
ProteinModelPortal:G4N5J1 EnsemblFungi:MGG_06124T0 GeneID:2684274
KEGG:mgr:MGG_06124 Uniprot:G4N5J1
Length = 1998
Score = 243 (90.6 bits), Expect = 2.5e-15, Sum P(7) = 2.5e-15
Identities = 77/261 (29%), Positives = 136/261 (52%)
Query: 700 LQIVGMSATMPNVAAVADWL-----QAALY-ETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++IVG+SAT+PN VAD+L Q Y + +FRPVPLE++ +G + K T
Sbjct: 467 IRIVGLSATLPNFIDVADFLKVNRMQGLFYFDASFRPVPLEQHF-IG--VKGK----AGT 519
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV-SKFLKKFSINVHS 812
+ NL D + E+ +++ H V++F SR+ TA+ + + + + +++
Sbjct: 520 KQSRENLDEVAFDKVREM----LEKDHQVMVFVHSRRDTLQTAKMLHERAVDQACLDLFD 575
Query: 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872
S +AI ++ C A L + +P G+ HHAG+T +R ++E + +G+++V
Sbjct: 576 P-SMHPKYDAAIRDMKTCKAR---ELRDLVPKGMGIHHAGMTRSDRNLMERLFAEGVLKV 631
Query: 873 LTATSTLAAGVNLPARRVIFRQPRI-----GRDFID-GTR-YRQMAGRAGRTGIDTKGES 925
L T+TLA GVNLPA V+ + ++ G+ F+D G Q+ GRAGR + G
Sbjct: 632 LCCTATLAWGVNLPAAAVVIKGTQVYSAQEGK-FVDLGILDVLQIFGRAGRPQFEDTGIG 690
Query: 926 MLICKPEEVKKIMGLLNESCP 946
M+ +++ + + + P
Sbjct: 691 MICTTADKLSHYLTAVTDQLP 711
Score = 186 (70.5 bits), Expect = 8.1e-12, Sum P(5) = 8.1e-12
Identities = 81/305 (26%), Positives = 127/305 (41%)
Query: 694 ADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFR----PVPLEEYIKVGNAIYSKKMD 749
A + ++++GMS N + +WL NFR PVPLE YI G
Sbjct: 1305 ASTKNSVRLLGMSTACANATDLGNWLGVKEGLFNFRHSVRPVPLELYID-GFPEVRGFCP 1363
Query: 750 VVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809
+++++ L K+ H V++F SR+ TA+ +
Sbjct: 1364 LMQSMNRPTFLAVKN--H---------SPTKPVIVFVPSRRQTRLTAKDLINMC-----G 1407
Query: 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL 869
+ + F+++ D D L+E + G+ HHAGL +R++ E +
Sbjct: 1408 MEDNPRRFLNMDED-DLQLNLTRVKDDALKEAISFGIGLHHAGLVESDRQLAEELFLNNK 1466
Query: 870 VRVLTATSTLAAGVNLPARRVI-----FRQPRI-GRDFIDGTRYRQMAGRAGRTGIDTKG 923
+++L ATSTLA GVNLPA V+ F +I G +D T QM GRAGR D G
Sbjct: 1467 IQILVATSTLAWGVNLPAHLVVVKGTQFYDAKIEGYKDMDLTDVLQMLGRAGRPQFDNSG 1526
Query: 924 ESMLICKPEEVKKIMGLLNESCP---PLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHR 980
+ + + + L+ P LH+ L H E+ A I+ T +D
Sbjct: 1527 VARIFTQDSKKDFYKHFLHTGFPVESSLHTVLDN------HLCAEISAETII-TKQDALD 1579
Query: 981 YVRCT 985
Y+ T
Sbjct: 1580 YLTWT 1584
Score = 100 (40.3 bits), Expect = 8.1e-12, Sum P(5) = 8.1e-12
Identities = 34/148 (22%), Positives = 65/148 (43%)
Query: 516 IYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-GKMAL 574
+Y +R P Q + H N++ + T +GK+ AE+ M G +
Sbjct: 1146 VYAQR-FQYFNPMQTQIFHTL-YHTPANVLLGSPTGSGKTVAAELAMWWAFRERPGSKVV 1203
Query: 575 LVLPYVSICAEKAEHLEV-LLEPLGRHVRSYYG-NQGGGSLPKDTSVAVCTIEKANSLVN 632
+ P ++ E+ + L +P+G + G N KD V + T EK + +
Sbjct: 1204 YIAPMKALVRERVKDWGARLAQPMGLKLVELTGDNTPDTRTIKDADVIITTPEKWDGISR 1263
Query: 633 RMLEEGRLSEIGIIVIDELHMVADQNRG 660
G + ++ +++IDE+H++A +RG
Sbjct: 1264 SWQTRGYVRQVSLVIIDEIHLLAG-DRG 1290
Score = 76 (31.8 bits), Expect = 2.5e-15, Sum P(7) = 2.5e-15
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 576 VLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP-KDTSVAVCTIEKANSLVNRM 634
V P ++ AE E L L LG R Y G+ T + V T EK + + +
Sbjct: 361 VAPMKALAAEITEKLGKRLAWLGIRCREYTGDMHLTKTEIVQTQIIVTTPEKWDVVTRKG 420
Query: 635 LEEGRL-SEIGIIVIDELHMVADQNRG 660
+ L ++ +++IDE+HM+ D+ RG
Sbjct: 421 TGDTELVQKVRLLIIDEVHMLHDE-RG 446
Score = 48 (22.0 bits), Expect = 2.5e-15, Sum P(7) = 2.5e-15
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 454 VHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGM 498
V K I++ G+ + T+V+ G + D +P SSGM
Sbjct: 16 VDAMKAAIAALGLQD-NARKTTSVLANGDGEDDQDNLSSPMSSGM 59
Score = 47 (21.6 bits), Expect = 2.5e-15, Sum P(7) = 2.5e-15
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL 566
N++ CA T AGK+ A + +L +
Sbjct: 309 NMLVCAPTGAGKTDAAMLTILHAI 332
Score = 43 (20.2 bits), Expect = 2.5e-15, Sum P(7) = 2.5e-15
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 1166 VQETPVLEVCETFKVARGMVQALQENA---GRFASMVSVFCERLGWYDL 1211
V TP+ ++ + ++ +++L +NA FA ++S C + + +L
Sbjct: 1644 VDPTPLGKIMSYYYLSHKTIRSLVKNAKAGATFADVLSWMCRAIEYDEL 1692
Score = 43 (20.2 bits), Expect = 2.5e-15, Sum P(7) = 2.5e-15
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 1068 TPINVE--VEPDWELYYERFLELSALD-QSVGNQVGVSEPYLMRMAHGAPMR 1116
TP++ + + PD E Y L L L ++ N + + Y R + PM+
Sbjct: 1108 TPVSFQHLIRPDTESVYTDLLNLQPLPIGALKNPI-LEHVYAQRFQYFNPMQ 1158
Score = 41 (19.5 bits), Expect = 2.5e-15, Sum P(7) = 2.5e-15
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 1851 TLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQC-VEHMVEFKMSNEDIYG 1909
TLG + SL + + L Q + +SM P+L VE + +S +
Sbjct: 1819 TLGKLASLPNKQLGSAIKELGVPASQQNKFQKAVSML-PDLSVKVEDITAASLSVV-LRR 1876
Query: 1910 GNAEVDH-CKINARDFFIPSQENWILLAAD 1938
N VD ++ A + P E W++L D
Sbjct: 1877 ANPLVDREARVYAPKYPKPQTEGWLVLVGD 1906
>DICTYBASE|DDB_G0290389 [details] [associations]
symbol:ascc3 "activating signal cointegrator 1
complex subunit" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 dictyBase:DDB_G0290389 GO:GO:0005524
GO:GO:0006355 GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AAFI02000163 RefSeq:XP_635715.1
ProteinModelPortal:Q54G57 EnsemblProtists:DDB0233132 GeneID:8627633
KEGG:ddi:DDB_G0290389 InParanoid:Q54G57 KO:K15271
ProtClustDB:CLSZ2429672 Uniprot:Q54G57
Length = 2195
Score = 244 (91.0 bits), Expect = 4.3e-15, Sum P(4) = 4.3e-15
Identities = 80/286 (27%), Positives = 128/286 (44%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAAN 759
++IVG+SAT+PN VA +++A T+F N I K + + N
Sbjct: 648 IRIVGLSATLPNYKDVARFIRAPASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMN 707
Query: 760 LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
E ++ ++EGH V+IF SRK +A +S K+ + + F
Sbjct: 708 ------QLCYERLEKSLKEGHQVMIFVHSRKDTVKSAEILSDMAKEKHFRFSNEEPSF-- 759
Query: 820 ITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTL 879
A + + G++ HHAGL +R VVE + G ++VL T+TL
Sbjct: 760 -----GAKKEFEKVKSKEIRSLFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATL 814
Query: 880 AAGVNLPARRVIFRQPRI----GRDFID-G-TRYRQMAGRAGRTGIDTKGESMLICKPEE 933
A GVNLPA VI + ++ F+D G + Q+ GRAGR DT GE L+ ++
Sbjct: 815 AWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDK 874
Query: 934 VKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIH 979
+ + L++ S P ++ N H E+V G + E ++
Sbjct: 875 LDHYLSLMSSSMPIESKFIT---NLEDHLNAEIVLGTVSNVNEAVN 917
Score = 200 (75.5 bits), Expect = 1.4e-11, Sum P(4) = 1.4e-11
Identities = 82/297 (27%), Positives = 137/297 (46%)
Query: 700 LQIVGMSATMPNVAAVADWL---QAALYE--TNFRPVPLEEYIK-VGNAIYSKKMDVVR- 752
+++VG+S M N +++W+ + L+ + RPVP+E +I+ Y +M +
Sbjct: 1484 IRVVGLSTAMANAIDLSEWMGIDRVGLFNFRPSCRPVPIEVHIQGFQGKNYCPRMQTMNK 1543
Query: 753 -TILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVH 811
+ A K P VLIF SSR+ TA + +L + +
Sbjct: 1544 PSFAAIATYSPKKP----------------VLIFVSSRRQTRLTALDLISYLVVDNDPLQ 1587
Query: 812 SSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
F DI + ++ D L TL G+ HHAGL +R +VE+ + + ++
Sbjct: 1588 WIQKGF-DIEPTLARVK------DQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQ 1640
Query: 872 VLTATSTLAAGVNLPARRVIFRQPRI--GRD--FIDG--TRYRQMAGRAGRTGIDTKGES 925
+L +TSTLA GVNLPA VI + G+ ++D T QM GRAGR D +G++
Sbjct: 1641 ILISTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKA 1700
Query: 926 MLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYV 982
M++ + + L + P + S L + + H E+V+G I Q+ + Y+
Sbjct: 1701 MVMVHEPKKQFYKKFLYDPFP-VESHLKDFLHD--HLNAEIVSGTI-QSKQGAINYL 1753
Score = 89 (36.4 bits), Expect = 1.4e-11, Sum P(4) = 1.4e-11
Identities = 28/145 (19%), Positives = 64/145 (44%)
Query: 515 SIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMAL 574
S++K S P Q + H N++ + T +GK+ AE+ M + M +
Sbjct: 1320 SLFK---FSHFNPIQTQVFHTL-YYTNNNVLLGSPTGSGKTICAELAMFKVFRDEPHMKV 1375
Query: 575 L-VLPYVSICAEKAEHLEVLL-EPLGRHVRSYYGNQGGGSLP-KDTSVAVCTIEKANSLV 631
+ + P ++ E+ +V E LG+ + G+ + ++ + T EK + +
Sbjct: 1376 VYIAPLKALVRERMNDWKVKFQEKLGKKLVELTGDYTPNMIALQNADIVTTTPEKWDGIS 1435
Query: 632 NRMLEEGRLSEIGIIVIDELHMVAD 656
++ + +++IDE+H++ +
Sbjct: 1436 RNWKNRSYVTSVSLLIIDEIHLIGE 1460
Score = 80 (33.2 bits), Expect = 4.3e-15, Sum P(4) = 4.3e-15
Identities = 31/129 (24%), Positives = 61/129 (47%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRLIST----GKM------ALLVLPYVSICAEKAEHLEV 592
N++ A T AGK+ +A + +L + S G + + + P ++ +E E
Sbjct: 500 NILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKALASEMVEKFSN 559
Query: 593 LLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDEL 651
L+ LG + G+ Q K+T + V T EK + + + + + +I+IDE+
Sbjct: 560 SLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLIIIDEI 619
Query: 652 HMVADQNRG 660
H++ ++ RG
Sbjct: 620 HLLHEE-RG 627
Score = 56 (24.8 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 570 GKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQG----GGSLPKDTSVAVCTIE 625
GK+AL P ++ EK H EV++ P + + N+ G S+ + + A +I+
Sbjct: 427 GKIAL---PKGTVRTEKTTHTEVMV-PYSL-AKPFADNEKLIEIGESIAEISRAAFGSIK 481
Query: 626 KANSLVNRMLEEGRLSEIGIIV 647
K N + +R+ E S I++
Sbjct: 482 KLNRIQSRVFESAYKSNENILI 503
Score = 44 (20.5 bits), Expect = 1.4e-11, Sum P(4) = 1.4e-11
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 353 IKAGGSLKQMGKDVIDSVKELSPLPIKHLDFLFE-DKNLKGTKPGCGAADTSEAMM 407
I+ G S+ ++ + S+K+L+ + + + ++ ++N+ + P GA T+ A++
Sbjct: 463 IEIGESIAEISRAAFGSIKKLNRIQSRVFESAYKSNENILISAP-TGAGKTNIALL 517
Score = 43 (20.2 bits), Expect = 4.3e-15, Sum P(4) = 4.3e-15
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 1664 PDDERSSNPNLEKEVKKRLSSEAA 1687
P +RS +P LE E K+ + AA
Sbjct: 938 PSSQRSKDPQLE-EFKREIIIRAA 960
Score = 37 (18.1 bits), Expect = 4.3e-15, Sum P(4) = 4.3e-15
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 1939 YSQIELRLMAHFSKDP 1954
++++ L L AHF + P
Sbjct: 1884 HTKVHLLLQAHFQRCP 1899
>GENEDB_PFALCIPARUM|PFD1060w [details] [associations]
symbol:PFD1060w "u5 small nuclear
ribonucleoprotein-specific protein, putative" species:5833
"Plasmodium falciparum" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 230 (86.0 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 97/346 (28%), Positives = 169/346 (48%)
Query: 700 LQIVGMSATMPNVAAVADWLQAAL------YETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
+++VG+SAT+PN V +L+A + ++ +FRPV +E++ +G I KK
Sbjct: 967 IRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHY-IG--IKEKK------ 1017
Query: 754 ILTAANLGGKDPDHIVELC-DEVVQEG--HSVLIFCSSRKGCESTARH-VSKFLKKFSIN 809
G K + EL ++V++E + +LIF SRK T++ + +F+K +++
Sbjct: 1018 -------GIKKYALMNELTYEKVLEEAGKNQILIFVHSRKETYRTSKLLIDRFMKSDNLS 1070
Query: 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL 869
D + I+S I L ++ L+E LP G HHAGL +R++VE +
Sbjct: 1071 KFLIDKK---ISSEI-LLSEKEHVINEELKEILPFGFGIHHAGLKRLDRKLVEDLFSDRH 1126
Query: 870 VRVLTATSTLAAGVNLPARRVIFRQPRIGR----DF--IDGTRYRQMAGRAGRTGIDTKG 923
++VL TSTLA G+NLPA VI + + DF + QM GR+GR D G
Sbjct: 1127 IQVLVCTSTLAWGINLPAHTVIIKGTSVYNINIGDFDELSSMDVLQMVGRSGRPQYDKSG 1186
Query: 924 ESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDI----- 978
++++I + ++ + L NE + S L + + +A E+V I Q +D
Sbjct: 1187 KAIIITDHKNLQLYLSLNNEQLF-IESTLLHNIVNIINA--EIVLKNI-QNMDDAMNWLE 1242
Query: 979 HRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRK-FLEWNEDTKLYS 1023
H Y+ +L + ++ S D ++ + K ++ N TK ++
Sbjct: 1243 HTYMYIRMLKCPSLYGVIINS-NDKIKGIEEFKDIIDMNNKTKKHN 1287
Score = 97 (39.2 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 56/263 (21%), Positives = 113/263 (42%)
Query: 411 GVVSEKGSVTHKSC-QKIKFK-CHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDS 468
G E T KS +K+K + E D+ V++ E K I + D
Sbjct: 602 GSGKEDNEPTQKSFYNNMKYKFIDLEKLETKEKNKDIFFNKEVILPPESKR-IERKEYDE 660
Query: 469 ITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPW 528
I S + + K+++ +S +K + ++ LP ++ I+KL P
Sbjct: 661 IIISSMKDNKMDGMKRTKNNKMNYYTSPEEIK-LIHINE-LPEWTHEVFSCVNITKLNPI 718
Query: 529 QVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRL----ISTGKM------ALLVLP 578
Q + V N++ CA T +GK+ +A + +L + +++G + + + P
Sbjct: 719 QSKVYDVAFNKYEENMLICAPTGSGKTNIALLCILNVINSYRLTSGNINRKDFKIVYISP 778
Query: 579 YVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTS-VAVCTIEKANSLVNRMLEE 637
++ E+ + + L+ + V G+ + D S + V T EK + + + E+
Sbjct: 779 MKALVNEQVQSFNLRLKCMNIKVSELTGDVNLSTKELDDSQIIVMTPEKFDVISRKWNEK 838
Query: 638 GRLSEIGIIVIDELHMVADQNRG 660
L +I +I+ DE+H++ ++ RG
Sbjct: 839 ILLHKIKLIIFDEIHLL-NEMRG 860
Score = 41 (19.5 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 38 TVEVSPSAKGTLDNYLKNSQDDGHTSKQSLLSRHEV-------VK-RNLSLEIDKYSKDE 89
T ++ SA + LKN + + K+ + S E+ ++ NLS EI ++K E
Sbjct: 139 TGDIINSACNEILYILKNEELNNEEKKKQVESELEIYINDDIFIEINNLSKEIYDFNKQE 198
Query: 90 KNQALLSDQ 98
+ + + +D+
Sbjct: 199 EGEYVENDE 207
Score = 37 (18.1 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 1547 NLPKDLWSDHRRKDRFL 1563
NL KD S+ +KD+++
Sbjct: 2597 NLNKDTKSEDYKKDQYI 2613
>UNIPROTKB|Q8IFP1 [details] [associations]
symbol:PFD1060w "U5 small nuclear
ribonucleoprotein-specific protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 230 (86.0 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 97/346 (28%), Positives = 169/346 (48%)
Query: 700 LQIVGMSATMPNVAAVADWLQAAL------YETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
+++VG+SAT+PN V +L+A + ++ +FRPV +E++ +G I KK
Sbjct: 967 IRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHY-IG--IKEKK------ 1017
Query: 754 ILTAANLGGKDPDHIVELC-DEVVQEG--HSVLIFCSSRKGCESTARH-VSKFLKKFSIN 809
G K + EL ++V++E + +LIF SRK T++ + +F+K +++
Sbjct: 1018 -------GIKKYALMNELTYEKVLEEAGKNQILIFVHSRKETYRTSKLLIDRFMKSDNLS 1070
Query: 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL 869
D + I+S I L ++ L+E LP G HHAGL +R++VE +
Sbjct: 1071 KFLIDKK---ISSEI-LLSEKEHVINEELKEILPFGFGIHHAGLKRLDRKLVEDLFSDRH 1126
Query: 870 VRVLTATSTLAAGVNLPARRVIFRQPRIGR----DF--IDGTRYRQMAGRAGRTGIDTKG 923
++VL TSTLA G+NLPA VI + + DF + QM GR+GR D G
Sbjct: 1127 IQVLVCTSTLAWGINLPAHTVIIKGTSVYNINIGDFDELSSMDVLQMVGRSGRPQYDKSG 1186
Query: 924 ESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDI----- 978
++++I + ++ + L NE + S L + + +A E+V I Q +D
Sbjct: 1187 KAIIITDHKNLQLYLSLNNEQLF-IESTLLHNIVNIINA--EIVLKNI-QNMDDAMNWLE 1242
Query: 979 HRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRK-FLEWNEDTKLYS 1023
H Y+ +L + ++ S D ++ + K ++ N TK ++
Sbjct: 1243 HTYMYIRMLKCPSLYGVIINS-NDKIKGIEEFKDIIDMNNKTKKHN 1287
Score = 97 (39.2 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 56/263 (21%), Positives = 113/263 (42%)
Query: 411 GVVSEKGSVTHKSC-QKIKFK-CHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDS 468
G E T KS +K+K + E D+ V++ E K I + D
Sbjct: 602 GSGKEDNEPTQKSFYNNMKYKFIDLEKLETKEKNKDIFFNKEVILPPESKR-IERKEYDE 660
Query: 469 ITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPW 528
I S + + K+++ +S +K + ++ LP ++ I+KL P
Sbjct: 661 IIISSMKDNKMDGMKRTKNNKMNYYTSPEEIK-LIHINE-LPEWTHEVFSCVNITKLNPI 718
Query: 529 QVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRL----ISTGKM------ALLVLP 578
Q + V N++ CA T +GK+ +A + +L + +++G + + + P
Sbjct: 719 QSKVYDVAFNKYEENMLICAPTGSGKTNIALLCILNVINSYRLTSGNINRKDFKIVYISP 778
Query: 579 YVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTS-VAVCTIEKANSLVNRMLEE 637
++ E+ + + L+ + V G+ + D S + V T EK + + + E+
Sbjct: 779 MKALVNEQVQSFNLRLKCMNIKVSELTGDVNLSTKELDDSQIIVMTPEKFDVISRKWNEK 838
Query: 638 GRLSEIGIIVIDELHMVADQNRG 660
L +I +I+ DE+H++ ++ RG
Sbjct: 839 ILLHKIKLIIFDEIHLL-NEMRG 860
Score = 41 (19.5 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 38 TVEVSPSAKGTLDNYLKNSQDDGHTSKQSLLSRHEV-------VK-RNLSLEIDKYSKDE 89
T ++ SA + LKN + + K+ + S E+ ++ NLS EI ++K E
Sbjct: 139 TGDIINSACNEILYILKNEELNNEEKKKQVESELEIYINDDIFIEINNLSKEIYDFNKQE 198
Query: 90 KNQALLSDQ 98
+ + + +D+
Sbjct: 199 EGEYVENDE 207
Score = 37 (18.1 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 1547 NLPKDLWSDHRRKDRFL 1563
NL KD S+ +KD+++
Sbjct: 2597 NLNKDTKSEDYKKDQYI 2613
>POMBASE|SPBC13G1.10c [details] [associations]
symbol:mug81 "ATP-dependent RNA helicase Slh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:2000765 "regulation of
cytoplasmic translation" evidence=ISS] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 PomBase:SPBC13G1.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0007126 GO:GO:2000765
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GO:GO:0004004 PIR:T39411
RefSeq:NP_596560.1 ProteinModelPortal:O60072 PRIDE:O60072
EnsemblFungi:SPBC13G1.10c.1 GeneID:2539673 KEGG:spo:SPBC13G1.10c
OMA:RKPTGEG OrthoDB:EOG4H75KM NextBio:20800827 Uniprot:O60072
Length = 1935
Score = 223 (83.6 bits), Expect = 1.2e-14, Sum P(5) = 1.2e-14
Identities = 76/263 (28%), Positives = 131/263 (49%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYE------TNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++IVG+SAT+PN VAD+L Y+ + FRP P+E++ +G A S K +V +
Sbjct: 452 IRIVGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHF-IG-AKGSPK--IVNS 507
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813
+ A D +++L +QEGH V+IF SRK T K ++F H
Sbjct: 508 NIDEACF-----DKVLKL----IQEGHQVMIFVHSRK---ETINSAKKLREQF---FHEG 552
Query: 814 DSEFIDITSAID---ALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLV 870
+++ +D + A R + L+E + H+AG+ +R + E + G++
Sbjct: 553 EADLLDNSQHEKYSLAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGIL 612
Query: 871 RVLTATSTLAAGVNLPARRVIFR-----QPRIGRDFID-GTR-YRQMAGRAGRTGIDTKG 923
++L T+TLA GVNLPA V+ + P+ G F+D G Q+ GRAGR ++
Sbjct: 613 KILCCTATLAWGVNLPAYAVLIKGTQLYDPQKG-SFVDLGVLDVLQIFGRAGRPQFESSA 671
Query: 924 ESMLICKPEEVKKIMGLLNESCP 946
+ +I +++ + ++ + P
Sbjct: 672 VAYIITTHDKLSHYISVVTQQSP 694
Score = 205 (77.2 bits), Expect = 8.0e-13, Sum P(5) = 8.0e-13
Identities = 94/306 (30%), Positives = 138/306 (45%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFR----PVPLEEYIK--VGNAIYSKKMDVVRT 753
++++G+S + N +A+WL NFR PVPLE YI G A + M + +
Sbjct: 1292 VRVLGLSTAVANANDLANWLNIRDGLFNFRHSVRPVPLEIYIDGFPGRAYCPRMMSMNKP 1351
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF--LKKFSINVH 811
A H VLIF SSR+ TA+ + F L+
Sbjct: 1352 AFQAIKT------H---------SPTQPVLIFVSSRRQTRLTAKDLIAFCGLEDNPRRFL 1396
Query: 812 SSDSEFID-ITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLV 870
D E ++ I S ++ D L+ LP G+A HHAGLT +R++ E + V
Sbjct: 1397 YMDEEELEMIVSEVE---------DKSLKLALPFGIALHHAGLTENDRKISEELFVNNKV 1447
Query: 871 RVLTATSTLAAGVNLPARRVIFR-----QPRIG--RDFIDGTRYRQMAGRAGRTGIDTKG 923
++L ATSTLA GVN PA VI + +IG +D +D T QM GRAGR D G
Sbjct: 1448 QILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYKD-MDLTDVLQMLGRAGRPQFDNSG 1506
Query: 924 ESMLICKPEEVKKIM--GLLNESCPPLHSCLSEDKNGMTHAILEVVAGGI--VQTAEDIH 979
+ + +++KK L+ P + S L + + H E+ G I +Q A D
Sbjct: 1507 VARIFV--QDIKKSFYKHFLHSGFP-VESYLHKVLDN--HLNAEIATGTIDCIQGAMD-- 1559
Query: 980 RYVRCT 985
++ CT
Sbjct: 1560 -FLTCT 1564
Score = 89 (36.4 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 26/121 (21%), Positives = 58/121 (47%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALL-VLPYVSICAEKAEHL-EVLLEPLGRH 600
N+ A T +GK+ AE+ R L + K ++ + P ++ E+ + L+EP+G
Sbjct: 1152 NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGIS 1211
Query: 601 VRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659
+ G+ + ++ + T EK + + + ++ +I++DE+H++ +R
Sbjct: 1212 MIELTGDTNPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGS-DR 1270
Query: 660 G 660
G
Sbjct: 1271 G 1271
Score = 83 (34.3 bits), Expect = 1.2e-14, Sum P(5) = 1.2e-14
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 576 VLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKANSLVNRM 634
+ P ++ AE E + L LG R G+ Q + +T + V T EK + + +
Sbjct: 346 IAPMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKS 405
Query: 635 LEEGRLSE-IGIIVIDELHMVADQNRG 660
+ + +L+E + +++IDE+HM+ D+ RG
Sbjct: 406 VGDTQLAEKVRLVIIDEVHMLHDE-RG 431
Score = 55 (24.4 bits), Expect = 1.2e-14, Sum P(5) = 1.2e-14
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL 566
N++ CA T AGK+ VA + ML+ +
Sbjct: 295 NMLICAPTGAGKTDVALLAMLQTI 318
Score = 47 (21.6 bits), Expect = 1.2e-14, Sum P(5) = 1.2e-14
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 401 DTSEAMMFRDGVVSEKGS-VTH 421
DTS A DG SE GS TH
Sbjct: 147 DTSIAAQLSDGYTSEAGSSATH 168
Score = 40 (19.1 bits), Expect = 6.1e-12, Sum P(4) = 6.1e-12
Identities = 23/104 (22%), Positives = 37/104 (35%)
Query: 50 DNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVIS 109
D LK Q+ GH + SR E + L + + E + S + Q+ +S
Sbjct: 515 DKVLKLIQE-GHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQHEKYSLAQRDVS 573
Query: 110 RCSSKEGNS----EVGCHMKDGSAHIPESLELKQFPTDFLSLYC 149
+ +KE +G H G L + F L + C
Sbjct: 574 KSKNKELKELFKYSMGIH-NAGMLRSDRHLTERLFSMGILKILC 616
Score = 37 (18.1 bits), Expect = 1.2e-14, Sum P(5) = 1.2e-14
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 1451 KNAIGTITSNRDLDLEVQ 1468
+N + IT N + DL +Q
Sbjct: 1636 RNFVQKITENAEFDLALQ 1653
>TAIR|locus:2075566 [details] [associations]
symbol:AT3G46960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0005773
"vacuole" evidence=IDA] [GO:0006813 "potassium ion transport"
evidence=IMP] [GO:0035864 "response to potassium ion" evidence=IMP]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005773
EMBL:CP002686 GO:GO:0003676 GO:GO:0006813 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC IPI:IPI00544785
RefSeq:NP_190280.5 UniGene:At.28750 UniGene:At.48743
ProteinModelPortal:F4JAA5 SMR:F4JAA5 PRIDE:F4JAA5
EnsemblPlants:AT3G46960.1 GeneID:823849 KEGG:ath:AT3G46960
GO:GO:0035864 Uniprot:F4JAA5
Length = 1347
Score = 212 (79.7 bits), Expect = 1.4e-14, Sum P(6) = 1.4e-14
Identities = 58/159 (36%), Positives = 83/159 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPVL-- 838
V++FC S+ C+ A L + S SE + A L+ L VL
Sbjct: 652 VVVFCFSKNYCDRCA----DALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVLRL 707
Query: 839 EETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI- 897
+ L G+ HHAGL +EVVE + +G+++VL +T T A GVN PAR V+F R
Sbjct: 708 QSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKF 767
Query: 898 -GRDF---IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
G++F + G Y QMAGRAGR G+D G +++C+ E
Sbjct: 768 DGKEFRQLLPG-EYTQMAGRAGRRGLDKTGTVVVMCRDE 805
Score = 72 (30.4 bits), Expect = 1.4e-14, Sum P(6) = 1.4e-14
Identities = 53/238 (22%), Positives = 94/238 (39%)
Query: 434 DNTSRTEGISDVQEKDS-VLIVHE--RKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEA 490
D+T+ +E E D+ I +E + L+ +D I S + T ++ + SD+
Sbjct: 268 DHTAGSESPKAEAEPDAKASISNEVSKGLETDVTVLDEILSSAKTAIMSEEAVTGSSDKQ 327
Query: 491 GTPSSSGMLKDCLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGV--LQRRNLVYCA 548
D D++ + I +P++++ + + L++ V+ A
Sbjct: 328 LRKEGWATKGDSQDIAD----RFYELVPDMAIE--FPFELDNFQKEAICCLEKGESVFVA 381
Query: 549 S-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN 607
+ TSAGK+ VAE + A+ P +I +K R + G
Sbjct: 382 AHTSAGKTVVAEYAFALATKHCTR-AVYTAPIKTISNQK--------------YRDFCGK 426
Query: 608 QGGGSLPKDTSV---AVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELHMVADQNRG 660
G L D S+ A C I ++ ML G + +I ++ DE+H V D RG
Sbjct: 427 FDVGLLTGDVSIRPEASCLI-MTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERG 483
Score = 71 (30.1 bits), Expect = 1.4e-14, Sum P(6) = 1.4e-14
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL------QAALYETNFRPVPLEEYIKVGNAIY 744
P H + V +SAT+PN ADW+ + + T RPVPLE + +Y
Sbjct: 494 PRH-INFVLLSATVPNTFEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELY 547
Score = 44 (20.5 bits), Expect = 1.4e-14, Sum P(6) = 1.4e-14
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 1155 RFYVALILSRLVQETPVLEVCETFKVARGMV 1185
+F + ++ + TP E+CE V G++
Sbjct: 1265 KFGLVEVVYEWAKGTPFAEICELTDVPEGLI 1295
Score = 43 (20.2 bits), Expect = 1.4e-14, Sum P(6) = 1.4e-14
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1072 VEVEPDWELYYERFLELSALDQSVGNQVGVSEPY 1105
++ EP E YY+ ++E + + + V + PY
Sbjct: 883 IKGEPAIEDYYDMYMEANEYNNKMSEAV-MQSPY 915
Score = 37 (18.1 bits), Expect = 1.4e-14, Sum P(6) = 1.4e-14
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 1989 DQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKI 2022
D+T R MG + L ++++ +SN K I
Sbjct: 1303 DETCREFKNAAAIMGNSALHKKMDAASNAIKRDI 1336
>SGD|S000004390 [details] [associations]
symbol:SKI2 "Ski complex component and putative RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
GermOnline:YLR398C Uniprot:P35207
Length = 1287
Score = 193 (73.0 bits), Expect = 1.5e-14, Sum P(5) = 1.5e-14
Identities = 54/149 (36%), Positives = 76/149 (51%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLE-- 839
+++F S+K CE A + F N S I +I L++ L +L+
Sbjct: 629 MVVFVFSKKRCEEYADWLEGI--NFCNNKEKSQIHMF-IEKSITRLKKEDRDLPQILKTR 685
Query: 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI-- 897
L G+A HH GL +E++E + KG ++VL AT T A G+NLP R VIF R
Sbjct: 686 SLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHD 745
Query: 898 G---RDFIDGTRYRQMAGRAGRTGIDTKG 923
G R+ G + QMAGRAGR G+D+ G
Sbjct: 746 GNGLRELTPG-EFTQMAGRAGRRGLDSTG 773
Score = 83 (34.3 bits), Expect = 1.5e-14, Sum P(5) = 1.5e-14
Identities = 32/143 (22%), Positives = 70/143 (48%)
Query: 523 SKLYPWQVECLHVDGV--LQRRNLVYCAS-TSAGKSFVAE--ILMLRRLISTGKMALLVL 577
++ +P++++ + V L++ + V+ A+ TSAGK+ VAE I M R ++ +
Sbjct: 323 ARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTK---TIYTS 379
Query: 578 PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEE 637
P ++ +K + + + + + G + D + + T E S++ R +
Sbjct: 380 PIKALSNQKFRDFKETFDDVNIGLIT-----GDVQINPDANCLIMTTEILRSMLYRGAD- 433
Query: 638 GRLSEIGIIVIDELHMVADQNRG 660
+ ++ ++ DE+H V DQ+RG
Sbjct: 434 -LIRDVEFVIFDEVHYVNDQDRG 455
Score = 66 (28.3 bits), Expect = 1.5e-14, Sum P(5) = 1.5e-14
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWL----QAALY--ETNFRPVPLE 734
P H ++ + +SAT+PN A+W+ Q +Y T RPVPLE
Sbjct: 466 PQH-VKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLE 509
Score = 52 (23.4 bits), Expect = 1.5e-14, Sum P(5) = 1.5e-14
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 1895 EHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDP 1954
EH + K+ E++ E C+I D E ++ L Y + + LM K P
Sbjct: 841 EHEKQIKVLQEELQ--TIEYKSCEICDNDI-----EKFLELMLAYKEATVNLMQEMVKSP 893
Query: 1955 ALIGLLSK 1962
+++ +L +
Sbjct: 894 SILHILKE 901
Score = 41 (19.5 bits), Expect = 1.5e-14, Sum P(5) = 1.5e-14
Identities = 12/62 (19%), Positives = 30/62 (48%)
Query: 49 LDNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLEID----KYSKDEKNQALLSDQAQPQAT 104
+D+ +N +G + L+ + L + I+ K ++EK+ +S++ +AT
Sbjct: 207 MDSPAENEDQNGQFKELKQLNE---IDNELDIRIEANEAKLKEEEKSAKSISEEIMEEAT 263
Query: 105 QK 106
++
Sbjct: 264 EE 265
Score = 37 (18.1 bits), Expect = 4.4e-13, Sum P(5) = 4.4e-13
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 1594 EKR-DVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSF 1641
EKR V K T + VL V+ + G LV T L L+N SF
Sbjct: 1093 EKRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSF 1141
>RGD|1307995 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex subunit
3" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 RGD:1307995 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 IPI:IPI01016410 UniGene:Rn.24209
Ensembl:ENSRNOT00000057016 UCSC:RGD:1307995
GeneTree:ENSGT00640000091272 ArrayExpress:F1LPQ2 Uniprot:F1LPQ2
Length = 2197
Score = 221 (82.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 85/304 (27%), Positives = 141/304 (46%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALY------ETNFRPVPL-EEYIKVGNAIYSKKMDVVR 752
++I+G+SAT+PN VA +L Y + FRPVPL + ++ + +A KM
Sbjct: 643 IRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSA---NKMQ--- 696
Query: 753 TILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLK---KFSIN 809
L D + E + V+ GH V++F +R TA + + K + S
Sbjct: 697 ------QLNNMD-EVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCF 749
Query: 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL 869
+ + E+ AL++ + + E G + HHAG+ ++R +VE + G
Sbjct: 750 LPTQGPEYGH------ALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGH 803
Query: 870 VRVLTATSTLAAGVNLPARRVIFRQPRIGR----DFID-GTR-YRQMAGRAGRTGIDTKG 923
++VL T+TLA GVNLPA VI + +I F+D G Q+ GRAGR D G
Sbjct: 804 IKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFG 863
Query: 924 ESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVR 983
E ++I +++ + LL + P+ S E +A E+ G + E + +++
Sbjct: 864 EGIIITTHDKLSHYLSLLTQQ-NPIESQFLESLADNLNA--EIALGTVTNVEEAV-KWMS 919
Query: 984 CTLL 987
T L
Sbjct: 920 YTYL 923
Score = 171 (65.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 57/159 (35%), Positives = 80/159 (50%)
Query: 835 DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894
D L+ TL G+ HHAGL +R+ VE + V+VL ATSTLA GVN PA VI +
Sbjct: 1605 DSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKG 1664
Query: 895 PRI--G--RDFIDG--TRYRQMAGRAGRTGIDTKGESMLICKPEEVKK--IMGLLNESCP 946
G R ++D T QM GRAGR D +G+++++ ++KK L E P
Sbjct: 1665 TEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILV--HDIKKDFYKKFLYEPFP 1722
Query: 947 PLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCT 985
S L + H E+ AGG + + +D Y+ T
Sbjct: 1723 VESSLLGVLSD---HLNAEI-AGGTITSKQDALDYITWT 1757
Score = 123 (48.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 65/272 (23%), Positives = 114/272 (41%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL--------ISTGKMALL-VLPYVSICAEKAEHLEVL 593
N++ CA T AGK+ +A + +L + + + ++ V P ++ AE +
Sbjct: 495 NMLICAPTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAPMKALAAEMTNYFSKR 554
Query: 594 LEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEI-GIIVIDEL 651
LEPLG V+ G+ Q S T + V T EK + + + + + LS+I ++++DE+
Sbjct: 555 LEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEV 614
Query: 652 HMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMSATMPN 711
H++ + R ++I+G+SAT+PN
Sbjct: 615 HLLHEDRGPVLESIVARTLRQVESTQSM--------------------IRILGLSATLPN 654
Query: 712 VAAVADWLQAALY------ETNFRPVPL-EEYIKVGNAIYSKKMDVVRTILTAANLGGKD 764
VA +L Y + FRPVPL + ++ + +A KM L D
Sbjct: 655 YLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSA---NKMQ---------QLNNMD 702
Query: 765 PDHIVELCDEVVQEGHSVLIFCSSRKGCESTA 796
+ E + V+ GH V++F +R TA
Sbjct: 703 -EVCYESVLKQVKAGHQVMVFVHARNATVRTA 733
Score = 97 (39.2 bits), Expect = 6.3e-14, Sum P(3) = 6.3e-14
Identities = 43/170 (25%), Positives = 77/170 (45%)
Query: 501 DCLDLSSWLPSEI--CSIYKKR-GISKLYPWQVECLHVDGVLQRR--NLVYCASTSAGKS 555
+ LDL LP C Y+ S P Q + H L N++ A T +GK+
Sbjct: 1302 ELLDLQP-LPVTALGCKAYEALYNFSHFNPVQTQIFHT---LYHTDCNVLLGAPTGSGKT 1357
Query: 556 FVAEILMLR--RLISTGKMALLVLPYVSICAEKAEHLEVLLEP-LGRHVRSYYGNQGGG- 611
AE+ + R T K A+ + P ++ E+ + ++ +E LG+ V G+
Sbjct: 1358 VAAELAIFRVFNKYPTSK-AVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDM 1416
Query: 612 -SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
S+ K + V T EK + + + ++ I++IDE+H++ ++ RG
Sbjct: 1417 KSIAK-ADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEE-RG 1464
Score = 75 (31.5 bits), Expect = 6.3e-14, Sum P(3) = 6.3e-14
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 700 LQIVGMSATMPNVAAVADWL---QAALYE--TNFRPVPLEEYIK 738
++IVG+S + N +ADWL Q L+ + RPVPLE +I+
Sbjct: 1485 VRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQ 1528
Score = 43 (20.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1388 LLETSDNELSALVEGGSITELQQKFD 1413
LL + L+A + GG+IT Q D
Sbjct: 1727 LLGVLSDHLNAEIAGGTITSKQDALD 1752
>DICTYBASE|DDB_G0270042 [details] [associations]
symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
Length = 2237
Score = 219 (82.2 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 85/298 (28%), Positives = 139/298 (46%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAAN 759
+++VG+SAT+PN VA +L+ P + + ++ Y + + + + + ++
Sbjct: 718 VRLVGLSATLPNYEDVATFLRV-------EP----DGVFYFDSSY-RPIPLEQQYIGISD 765
Query: 760 LGGKDPDHIVELCDEVVQE---GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSE 816
G K ++ V E H +LIF SR+ TA+ K L+ ++ S D
Sbjct: 766 RGIKQLQRCNDITFTKVSERVGDHQILIFVHSRR---ETAK-TGKDLRDRAVEDQSIDRY 821
Query: 817 FIDITSAIDALRRCPAGL--DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874
D S + LR + + L++ LP G+ HHAGL+ +R +VE + ++VL
Sbjct: 822 IRDPASR-EILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLI 880
Query: 875 ATSTLAAGVNLPARRVIFR-----QPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLIC 929
+T+TLA GVNLPA VI + P G + QM GRAGR D +GE ++I
Sbjct: 881 STATLAWGVNLPAHTVIIKGTQIYNPEKGWCELSPLDVTQMLGRAGRPPFDKEGEGIIIT 940
Query: 930 KPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
E++ + LLN +S + + E+V G I QT D ++ T L
Sbjct: 941 SQHELQFYLSLLNTQLSIESQFISRIADNLN---AEIVLGSI-QTVRDAVNWLGYTYL 994
Score = 138 (53.6 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 48/135 (35%), Positives = 72/135 (53%)
Query: 838 LEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGV-NLPARRVIFRQPR 896
L+++L GVA++H GLT ER VVE +R G +RVL AT ++A + N+ A+ V+ +
Sbjct: 1682 LKQSLQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHSVAWLLDNVFAQLVVIMGTQ 1741
Query: 897 I--GRD--FIDG--TRYRQMAGRAGRT--G--IDTK-GESMLICKPEEVKKIMGLLNESC 945
+ G+D +ID QM GRAG+ G I K + +L+C + + LNE
Sbjct: 1742 LYQGKDIRYIDYPINDILQMIGRAGKQEGGGVISNKVAKVLLLCHAPKKEYYKMFLNEPL 1801
Query: 946 PP---LHSCLSEDKN 957
P L CL + N
Sbjct: 1802 PVESHLDHCLHDQFN 1816
Score = 91 (37.1 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 34/130 (26%), Positives = 60/130 (46%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL-----ISTGKMAL------LVLPYVSICAEKAEHLE 591
NL+ A TS+GK+ VA + +L + +GK+ L + P S+ E +
Sbjct: 569 NLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFS 628
Query: 592 VLLEPLGRHVRSYYGNQG-GGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDE 650
L+ G V G+Q +T + V T EK + + + + + +I+IDE
Sbjct: 629 KRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVKLIIIDE 688
Query: 651 LHMVADQNRG 660
+H++ D+ RG
Sbjct: 689 IHLLHDE-RG 697
Score = 83 (34.3 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 42/206 (20%), Positives = 82/206 (39%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL-PYVSICAEKAEHLEV---LLEPLG 598
N A T++GK+ AEI ++R K ++ L P + + + + + P G
Sbjct: 1415 NAFISAPTNSGKTVCAEIALIRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKFGVKSPFG 1474
Query: 599 RHVRSYYGNQGGGSLPKDTS-VAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657
V G+ + D S + V EK + L + + L I ++++DELH++ +
Sbjct: 1475 LVVSDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGE 1534
Query: 658 NRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVAD 717
G RY + + L+++ +S+++ N +
Sbjct: 1535 Y-GPTMEIVVSRMRYISTQT-------------------GNALRVIALSSSIANARDLVL 1574
Query: 718 WLQAAL-----YETNFRPVPLEEYIK 738
W+ A + N RP+P+E I+
Sbjct: 1575 WIGATPQTCYNFHPNVRPIPVEYQIQ 1600
Score = 52 (23.4 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 33/159 (20%), Positives = 66/159 (41%)
Query: 54 KNSQDDGHTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSS 113
KN++DD + + + L+S +E+ + +I ++ +D L+++ Q + RC
Sbjct: 317 KNTKDDKNNNSK-LISPNEIDSFWIQRKISEFERDHDLSKQLAEKTLNILRQPNVRRCEQ 375
Query: 114 KEGNSEVGCHMKDGSAHIPESLELKQFPTDFLSLYCXXXXXXXXXXXXXKLKDHKRHSSP 173
+ V D + + KQ LYC K++D + S+P
Sbjct: 376 QL----VDLFTIDKLDFLKLIINNKQ-----TILYCTLLAKAENDQERKKIED-EMSSNP 425
Query: 174 SLLGGEDNKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQ 212
L N++ + + ++ E+T SN K++E Q
Sbjct: 426 VTLSIL-NRLKGNEVTAATTEKTIEKTE-SNKKDVEMKQ 462
Score = 44 (20.5 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 190 VSNLLQSGEQTTCSNAKNIEETQS 213
+ N L+ E T + K IE+T+S
Sbjct: 430 ILNRLKGNEVTAATTEKTIEKTES 453
Score = 38 (18.4 bits), Expect = 4.3e-13, Sum P(4) = 4.3e-13
Identities = 5/22 (22%), Positives = 16/22 (72%)
Query: 227 SQRVTDSNASLLLQASLRKCDK 248
S+++ + ++L Q ++R+C++
Sbjct: 354 SKQLAEKTLNILRQPNVRRCEQ 375
Score = 37 (18.1 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 1910 GNAEVDHCKINARDFFIPSQENWILLAADYSQ 1941
G+A D+ ++ + + + E W +L+ + Q
Sbjct: 1482 GDAVTDNKILDRSNIIVTNCEKWDILSRKWKQ 1513
>UNIPROTKB|E2QVY0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005794
GO:GO:0006307 GO:GO:0008283 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 Ensembl:ENSCAFT00000005717
Uniprot:E2QVY0
Length = 1925
Score = 228 (85.3 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 85/303 (28%), Positives = 139/303 (45%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++I+G+SAT+PN VA +L ++ FRPVPL + +G V++
Sbjct: 642 IRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPLGQTF-LG----------VKS 690
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLK---KFSINV 810
L D + E + V+ GH V++F +R TA + + K + S +
Sbjct: 691 ANKVQQLNNMD-EVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFL 749
Query: 811 HSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLV 870
S SE+ + R + + E P G + HHAG+ ++R +VE + G +
Sbjct: 750 PSQGSEYGHAEKQVQKSR------NKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHI 803
Query: 871 RVLTATSTLAAGVNLPARRVIFRQPRIGR----DFID-GTR-YRQMAGRAGRTGIDTKGE 924
+VL T+TLA GVNLPA VI + +I F+D G Q+ GRAGR D GE
Sbjct: 804 KVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDRFGE 863
Query: 925 SMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRC 984
++I +++ + LL + P+ S E +A E+ G + E + +++
Sbjct: 864 GIIITTHDKLSHYLTLLTQQ-NPIESQFLESLADNLNA--EIALGTVTNVEEAV-KWISY 919
Query: 985 TLL 987
T L
Sbjct: 920 TYL 922
Score = 193 (73.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 88/295 (29%), Positives = 131/295 (44%)
Query: 700 LQIVGMSATMPNVAAVADWLQA-ALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IVG+S + N +ADWL + NFRP ++V + + R + +
Sbjct: 1484 VRIVGLSTALANARDLADWLNIHQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPR--MASM 1541
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
N K + VLIF SSR+ TA + FL + +
Sbjct: 1542 N---KPTFQAIRSHSPA----KPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDER 1594
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
++ + I LR D L+ TL G+ HHAGL +R+ VE + V+VL ATST
Sbjct: 1595 EMENIIGTLR------DSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATST 1648
Query: 879 LAAGVNLPARRVIFRQPRI--G--RDFIDG--TRYRQMAGRAGRTGIDTKGESMLICKPE 932
LA GVN PA VI + G R ++D T QM GRAGR D +G+++++
Sbjct: 1649 LAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILV--H 1706
Query: 933 EVKK--IMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCT 985
++KK L E P S L + H E+ AGG + + +D Y+ T
Sbjct: 1707 DIKKDFYKKFLYEPFPVESSLLGVLSD---HLNAEI-AGGTITSKQDAMDYITWT 1757
Score = 96 (38.9 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 44/170 (25%), Positives = 77/170 (45%)
Query: 501 DCLDLSSWLPSEI--CSIYKKR-GISKLYPWQVECLHVDGVLQRR--NLVYCASTSAGKS 555
+ LDL LP C Y+ S P Q + H L N++ A T +GK+
Sbjct: 1301 ELLDLQP-LPITALGCEAYEALYNFSHFNPVQTQIFHT---LYHTDCNVLLGAPTGSGKT 1356
Query: 556 FVAEILMLR--RLISTGKMALLVLPYVSICAEKAEHLEVLLEP-LGRHVRSYYGNQGGG- 611
AE+ + R T K A+ + P ++ E+ + +V +E LG+ V G+
Sbjct: 1357 VAAELAIFRVFNKYPTSK-AVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDM 1415
Query: 612 -SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
S+ K + V T EK + + + ++ I++IDE+H++ ++ RG
Sbjct: 1416 KSIAK-ADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEE-RG 1463
Score = 45 (20.9 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 622 CTIEK-ANSLVNRMLEEGRLSEIGIIVIDELHMV 654
C +EK N+ +N M E R+ ++ + D L V
Sbjct: 225 CEVEKYLNATLNEMAEATRIEDLCCTLYDMLASV 258
Score = 43 (20.2 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1388 LLETSDNELSALVEGGSITELQQKFD 1413
LL + L+A + GG+IT Q D
Sbjct: 1727 LLGVLSDHLNAEIAGGTITSKQDAMD 1752
>MGI|MGI:1925237 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex
subunit 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 MGI:MGI:1925237 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529
OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC137877 EMBL:AC153529
EMBL:AC159114 EMBL:BC032189 EMBL:BC059917 EMBL:AK021027
EMBL:AK052745 IPI:IPI00553687 RefSeq:NP_932124.2 UniGene:Mm.222497
PRIDE:E9PZJ8 Ensembl:ENSMUST00000035606 GeneID:77987 KEGG:mmu:77987
HOGENOM:HOG000157749 NextBio:347945 Bgee:E9PZJ8 Uniprot:E9PZJ8
Length = 2198
Score = 220 (82.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 84/304 (27%), Positives = 141/304 (46%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALY------ETNFRPVPL-EEYIKVGNAIYSKKMDVVR 752
++I+G+SAT+PN VA +L Y + FRPVPL + ++ + + + KM
Sbjct: 643 IRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKS---TNKMQ--- 696
Query: 753 TILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLK---KFSIN 809
L D + E + V+ GH V++F +R TA + + K + S
Sbjct: 697 ------QLNNMD-EVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCF 749
Query: 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL 869
+ + E+ AL++ + + E G + HHAG+ ++R +VE + G
Sbjct: 750 LPTEGPEYGH------ALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGH 803
Query: 870 VRVLTATSTLAAGVNLPARRVIFRQPRIGR----DFID-GTR-YRQMAGRAGRTGIDTKG 923
++VL T+TLA GVNLPA V+ + +I F+D G Q+ GRAGR D G
Sbjct: 804 IKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFG 863
Query: 924 ESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVR 983
E ++I +++ + LL + P+ S E +A E+ G + E + R++
Sbjct: 864 EGIIITTHDKLSHYLSLLTQQ-NPIESQFLESLADNLNA--EIALGTVTNVEEAV-RWMS 919
Query: 984 CTLL 987
T L
Sbjct: 920 YTYL 923
Score = 192 (72.6 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 93/324 (28%), Positives = 142/324 (43%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYET-NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IVG+S + N +ADWL NFRP ++V + + R + +
Sbjct: 1485 VRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPR--MASM 1542
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
N K + VLIF SSR+ TA + FL + +
Sbjct: 1543 N---KPAFQAIRSHSPA----KPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEQ 1595
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
++ + I +R D L+ TL G+ HHAGL +R+ VE + V+VL ATST
Sbjct: 1596 EMDNIIGTVR------DSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATST 1649
Query: 879 LAAGVNLPARRVIFRQPRI--G--RDFIDG--TRYRQMAGRAGRTGIDTKGESMLICKPE 932
LA GVN PA VI + G R ++D T QM GRAGR D +G+++++
Sbjct: 1650 LAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILV--H 1707
Query: 933 EVKK--IMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTL---- 986
++KK L E P S L + H E+ AGG + + +D Y+ T
Sbjct: 1708 DIKKDFYKKFLYEPFPVESSLLGVLSD---HLNAEI-AGGTITSKQDAMDYITWTYFFRR 1763
Query: 987 LNSTKPFQDVVKSAQDSL-RWLCH 1009
L + + +QDS+ ++L H
Sbjct: 1764 LIMNPSYYSLGDVSQDSINKFLSH 1787
Score = 97 (39.2 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 43/170 (25%), Positives = 77/170 (45%)
Query: 501 DCLDLSSWLPSEI--CSIYKKR-GISKLYPWQVECLHVDGVLQRR--NLVYCASTSAGKS 555
+ LDL LP C Y+ S P Q + H L N++ A T +GK+
Sbjct: 1302 ELLDLQP-LPITALGCKAYEALYNFSHFNPVQTQIFHT---LYHTDCNVLLGAPTGSGKT 1357
Query: 556 FVAEILMLR--RLISTGKMALLVLPYVSICAEKAEHLEVLLEP-LGRHVRSYYGNQGGG- 611
AE+ + R T K A+ + P ++ E+ + ++ +E LG+ V G+
Sbjct: 1358 VAAELAIFRVFNKYPTSK-AVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDM 1416
Query: 612 -SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
S+ K + V T EK + + + ++ I++IDE+H++ ++ RG
Sbjct: 1417 KSIAK-ADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEE-RG 1464
Score = 44 (20.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 19/90 (21%), Positives = 35/90 (38%)
Query: 1443 TTLSVQLGKNAIGTITSNRDLDLEVQDRPNRDPCLVNKDRACNKGPINAINASGGFDCFL 1502
T L V++ N + S++ ++ R +R+ L+ + +K + G+
Sbjct: 921 TYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGYFSST 980
Query: 1503 DRWEATHEFYFDIHYDKHSEANSGVLFEIH 1532
D FY I Y+ N LF+ H
Sbjct: 981 DLGRTASHFY--IKYNTIETFNE--LFDAH 1006
Score = 43 (20.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1388 LLETSDNELSALVEGGSITELQQKFD 1413
LL + L+A + GG+IT Q D
Sbjct: 1728 LLGVLSDHLNAEIAGGTITSKQDAMD 1753
>UNIPROTKB|F6Y2F0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 GO:GO:0008026
Ensembl:ENSCAFT00000005717 EMBL:AAEX03008562 RefSeq:XP_854167.1
ProteinModelPortal:F6Y2F0 GeneID:475008 KEGG:cfa:475008 OMA:XAVYIAP
Uniprot:F6Y2F0
Length = 2202
Score = 228 (85.3 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 85/303 (28%), Positives = 139/303 (45%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++I+G+SAT+PN VA +L ++ FRPVPL + +G V++
Sbjct: 642 IRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPLGQTF-LG----------VKS 690
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLK---KFSINV 810
L D + E + V+ GH V++F +R TA + + K + S +
Sbjct: 691 ANKVQQLNNMD-EVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFL 749
Query: 811 HSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLV 870
S SE+ + R + + E P G + HHAG+ ++R +VE + G +
Sbjct: 750 PSQGSEYGHAEKQVQKSR------NKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHI 803
Query: 871 RVLTATSTLAAGVNLPARRVIFRQPRIGR----DFID-GTR-YRQMAGRAGRTGIDTKGE 924
+VL T+TLA GVNLPA VI + +I F+D G Q+ GRAGR D GE
Sbjct: 804 KVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDRFGE 863
Query: 925 SMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRC 984
++I +++ + LL + P+ S E +A E+ G + E + +++
Sbjct: 864 GIIITTHDKLSHYLTLLTQQ-NPIESQFLESLADNLNA--EIALGTVTNVEEAV-KWISY 919
Query: 985 TLL 987
T L
Sbjct: 920 TYL 922
Score = 193 (73.0 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 88/295 (29%), Positives = 131/295 (44%)
Query: 700 LQIVGMSATMPNVAAVADWLQA-ALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IVG+S + N +ADWL + NFRP ++V + + R + +
Sbjct: 1484 VRIVGLSTALANARDLADWLNIHQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPR--MASM 1541
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
N K + VLIF SSR+ TA + FL + +
Sbjct: 1542 N---KPTFQAIRSHSPA----KPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDER 1594
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
++ + I LR D L+ TL G+ HHAGL +R+ VE + V+VL ATST
Sbjct: 1595 EMENIIGTLR------DSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATST 1648
Query: 879 LAAGVNLPARRVIFRQPRI--G--RDFIDG--TRYRQMAGRAGRTGIDTKGESMLICKPE 932
LA GVN PA VI + G R ++D T QM GRAGR D +G+++++
Sbjct: 1649 LAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILV--H 1706
Query: 933 EVKK--IMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCT 985
++KK L E P S L + H E+ AGG + + +D Y+ T
Sbjct: 1707 DIKKDFYKKFLYEPFPVESSLLGVLSD---HLNAEI-AGGTITSKQDAMDYITWT 1757
Score = 96 (38.9 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 44/170 (25%), Positives = 77/170 (45%)
Query: 501 DCLDLSSWLPSEI--CSIYKKR-GISKLYPWQVECLHVDGVLQRR--NLVYCASTSAGKS 555
+ LDL LP C Y+ S P Q + H L N++ A T +GK+
Sbjct: 1301 ELLDLQP-LPITALGCEAYEALYNFSHFNPVQTQIFHT---LYHTDCNVLLGAPTGSGKT 1356
Query: 556 FVAEILMLR--RLISTGKMALLVLPYVSICAEKAEHLEVLLEP-LGRHVRSYYGNQGGG- 611
AE+ + R T K A+ + P ++ E+ + +V +E LG+ V G+
Sbjct: 1357 VAAELAIFRVFNKYPTSK-AVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDM 1415
Query: 612 -SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
S+ K + V T EK + + + ++ I++IDE+H++ ++ RG
Sbjct: 1416 KSIAK-ADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEE-RG 1463
Score = 45 (20.9 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 622 CTIEK-ANSLVNRMLEEGRLSEIGIIVIDELHMV 654
C +EK N+ +N M E R+ ++ + D L V
Sbjct: 225 CEVEKYLNATLNEMAEATRIEDLCCTLYDMLASV 258
Score = 43 (20.2 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1388 LLETSDNELSALVEGGSITELQQKFD 1413
LL + L+A + GG+IT Q D
Sbjct: 1727 LLGVLSDHLNAEIAGGTITSKQDAMD 1752
>CGD|CAL0001532 [details] [associations]
symbol:orf19.3098 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001532 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 KO:K12854 GO:GO:0008026 EMBL:AACQ01000086
EMBL:AACQ01000085 RefSeq:XP_715407.1 RefSeq:XP_715477.1
ProteinModelPortal:Q5A0Z8 STRING:Q5A0Z8 GeneID:3642881
GeneID:3642903 KEGG:cal:CaO19.10610 KEGG:cal:CaO19.3098
Uniprot:Q5A0Z8
Length = 1987
Score = 271 (100.5 bits), Expect = 5.9e-14, Sum P(5) = 5.9e-14
Identities = 90/286 (31%), Positives = 142/286 (49%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAAN 759
++IVG+SAT+PN A VA +++A + I K+ ++ I A N
Sbjct: 537 IRIVGLSATLPNYADVAKFIRAKPEGLFYFDASYRPCPLEQVYIGVKEQKAIKRI-AAMN 595
Query: 760 LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
D H + +Q+ H ++IF SRK +TA+++ ++K I++ ++
Sbjct: 596 EACYDRMH------QSLQDRHQLIIFVHSRKETFTTAKYL---MEKLDIDI-------VE 639
Query: 820 ITSAIDALRRCPAGL-DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
+ L++ + +P L+E +P G HHAGLT ++R VVE + +G +RVL +T+T
Sbjct: 640 QEGVKEILKQEGESMSNPKLKEVIPRGFGIHHAGLTKKDRGVVEDLFAQGYLRVLVSTAT 699
Query: 879 LAAGVNLPARRVIFR-----QPRIGRDF-IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
LA GVNLPA VI + P G + QM GRAGR D GE ++I +
Sbjct: 700 LAWGVNLPAHTVIIKGTETYSPESGAWVQLSPQDILQMLGRAGRPRYDKNGEGIIITSQD 759
Query: 933 EVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDI 978
EV+ + +LN+ P + S L +A E+VAG I E I
Sbjct: 760 EVQYYLAILNQQLP-IESQLIHKLVDNINA--EIVAGSITTIEEGI 802
Score = 51 (23.0 bits), Expect = 5.9e-14, Sum P(5) = 5.9e-14
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 1214 LIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFES 1273
L+ F +R+S A I ++ I G RALY+ L + SI + K + +
Sbjct: 948 LLQTFISRLSLEGYALIADMIYITQSAGRLLRALYEIALLQKWSSLAKSILNLCK-MVDK 1006
Query: 1274 SSWIAEAQRRVQLG 1287
W+ + R Q G
Sbjct: 1007 RLWLNNSPLR-QFG 1019
Score = 41 (19.5 bits), Expect = 5.9e-14, Sum P(5) = 5.9e-14
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 1889 PNLQCVEHMVEFKMSNEDIY-----GGNAEVDHCKINARDFF-IPSQENWILLAAD 1938
PN++ M SNE + + E++ ++ + F + QENW ++ D
Sbjct: 1874 PNIELSYEMKGGVTSNESKFVTVTIDRDEEIESLEVVKNENFPVTKQENWWIVVGD 1929
Score = 37 (18.1 bits), Expect = 5.9e-14, Sum P(5) = 5.9e-14
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 1499 DCFLDRWEATHEFYFDIHYD 1518
D F+ W+ H D+HY+
Sbjct: 1326 DLFI--WDDLHLVGSDVHYE 1343
Score = 37 (18.1 bits), Expect = 5.9e-14, Sum P(5) = 5.9e-14
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 215 FIVKTGNLVPNSSQRVTDSNASLLLQASLRKCDKS 249
F+ K + +P+SS V S AS + L D S
Sbjct: 66 FVTKIRSYLPDSSHEVIQS-ASEVASEQLSNRDIS 99
>UNIPROTKB|E1BNG3 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9913 "Bos taurus" [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:DAAA02026160 EMBL:DAAA02026161
EMBL:DAAA02026162 EMBL:DAAA02026163 EMBL:DAAA02026164
EMBL:DAAA02026165 EMBL:DAAA02026166 EMBL:DAAA02026167
EMBL:DAAA02026168 EMBL:DAAA02026169 EMBL:DAAA02026170
EMBL:DAAA02026171 EMBL:DAAA02026172 EMBL:DAAA02026173
EMBL:DAAA02026174 EMBL:DAAA02026175 EMBL:DAAA02026176
EMBL:DAAA02026177 EMBL:DAAA02026178 EMBL:DAAA02026179
EMBL:DAAA02026180 EMBL:DAAA02026181 EMBL:DAAA02026182
EMBL:DAAA02026183 EMBL:DAAA02026184 EMBL:DAAA02026185
EMBL:DAAA02026186 EMBL:DAAA02026187 EMBL:DAAA02026188
EMBL:DAAA02026189 EMBL:DAAA02026190 EMBL:DAAA02026191
EMBL:DAAA02026192 EMBL:DAAA02026193 EMBL:DAAA02026194
EMBL:DAAA02026195 EMBL:DAAA02026196 EMBL:DAAA02026197
EMBL:DAAA02026198 EMBL:DAAA02026199 IPI:IPI00689177
RefSeq:NP_001193047.1 UniGene:Bt.26262 PRIDE:E1BNG3
Ensembl:ENSBTAT00000027294 GeneID:538416 KEGG:bta:538416 CTD:10973
GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC NextBio:20877349
GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 Uniprot:E1BNG3
Length = 2201
Score = 220 (82.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 80/300 (26%), Positives = 139/300 (46%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++I+G+SAT+PN VA +L ++ FRPVPL + +G +++
Sbjct: 642 IRILGLSATLPNYLDVATFLHVNPCIGLFFFDGRFRPVPLGQTF-LG----------IKS 690
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813
L D + E + V+ GH V++F +R TA + + K +
Sbjct: 691 ANKVQQLNNMD-EVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNNGQICYFL 749
Query: 814 DSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVL 873
++ + A +++ + + E P G + HHAG+ ++R +VE+ + G ++VL
Sbjct: 750 PTQGPEYGHAEKQVQK---SRNRQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVL 806
Query: 874 TATSTLAAGVNLPARRVIFRQPRIGR----DFID-GTR-YRQMAGRAGRTGIDTKGESML 927
T+TLA GVNLPA VI + +I F+D G Q+ GRAGR D GE ++
Sbjct: 807 VCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGII 866
Query: 928 ICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
I +++ + LL + P+ S E +A E+ G + E + +++ T L
Sbjct: 867 ITTHDKLSHYLSLLTQQ-NPIESQFLESLADNLNA--EIALGTVTNVEEAV-KWISYTYL 922
Score = 190 (71.9 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 86/295 (29%), Positives = 130/295 (44%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYET-NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IVG+S + N +ADWL NFRP ++V + + R + +
Sbjct: 1484 VRIVGLSTALANARDLADWLNIRQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPR--MASM 1541
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
N K + VLIF SSR+ TA + FL + +
Sbjct: 1542 N---KPTFQAIRSHSPA----KPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDER 1594
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
++ + I +R D L+ TL G+ HHAGL +R+ VE + ++VL ATST
Sbjct: 1595 EMENIIGTIR------DSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATST 1648
Query: 879 LAAGVNLPARRVIFRQPRI--G--RDFIDG--TRYRQMAGRAGRTGIDTKGESMLICKPE 932
LA GVN PA VI + G R ++D T QM GRAGR D +G+++++
Sbjct: 1649 LAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILV--H 1706
Query: 933 EVKK--IMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCT 985
++KK L E P S L + H E+ AGG + + +D Y+ T
Sbjct: 1707 DIKKDFYKKFLYEPFPVESSLLGVLSD---HLNAEI-AGGTITSKQDAMDYITWT 1757
Score = 96 (38.9 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 44/170 (25%), Positives = 77/170 (45%)
Query: 501 DCLDLSSWLPSEI--CSIYKKR-GISKLYPWQVECLHVDGVLQRR--NLVYCASTSAGKS 555
+ LDL LP C Y+ S P Q + H L N++ A T +GK+
Sbjct: 1301 ELLDLQP-LPVTALGCEAYEALYNFSHFNPVQTQIFHT---LYHTDCNVLLGAPTGSGKT 1356
Query: 556 FVAEILMLR--RLISTGKMALLVLPYVSICAEKAEHLEVLLEP-LGRHVRSYYGNQGGG- 611
AE+ + R T K A+ + P ++ E+ + +V +E LG+ V G+
Sbjct: 1357 VAAELAIFRVFNKYPTSK-AVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDM 1415
Query: 612 -SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
S+ K + V T EK + + + ++ I++IDE+H++ ++ RG
Sbjct: 1416 KSIAK-ADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEE-RG 1463
Score = 45 (20.9 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 622 CTIEK-ANSLVNRMLEEGRLSEIGIIVIDELHMV 654
C +EK N+ +N M E R+ ++ + D L V
Sbjct: 225 CEVEKYLNATLNEMAEATRIEDLCCTLYDMLASV 258
Score = 43 (20.2 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1388 LLETSDNELSALVEGGSITELQQKFD 1413
LL + L+A + GG+IT Q D
Sbjct: 1727 LLGVLSDHLNAEIAGGTITSKQDAMD 1752
>TAIR|locus:2089144 [details] [associations]
symbol:RCK "ROCK-N-ROLLERS" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IMP] [GO:0051026 "chiasma assembly"
evidence=IMP] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007067
"mitosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0007131
GO:GO:0008026 GO:GO:0051026 KO:K15271 EMBL:AY822649 EMBL:AY960701
IPI:IPI00517826 RefSeq:NP_189410.2 UniGene:At.53523
ProteinModelPortal:Q5D892 SMR:Q5D892 STRING:Q5D892 PRIDE:Q5D892
EnsemblPlants:AT3G27730.1 GeneID:822395 KEGG:ath:AT3G27730
TAIR:At3g27730 HOGENOM:HOG000029933 InParanoid:Q5D892 OMA:IMTRRET
PhylomeDB:Q5D892 ProtClustDB:CLSN2699173 Genevestigator:Q5D892
Uniprot:Q5D892
Length = 1133
Score = 240 (89.5 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 83/304 (27%), Positives = 151/304 (49%)
Query: 700 LQIVGMSATMPNVAAVADWLQ---AAL--YETNFRPVPLEEYIKVGNAIYSKKMDVVRTI 754
++++ +SAT+PN+ +A+WL+ A + + RPV L + G A + K D
Sbjct: 202 VRLLAVSATIPNIEDLAEWLKVPTAGIKRFGEEMRPVKLTTKV-FGYA--AAKND----F 254
Query: 755 LTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814
L L ++I ++ + +G S L+FCS+RKG + A+ +++ + +
Sbjct: 255 LFEKRL----QNYIYDILMQY-SKGKSALVFCSTRKGAQEAAQKLAQTAMTYGYS----- 304
Query: 815 SEFIDITSAIDALRRC-PAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVL 873
+ FI ++ LR P D ++ + GV YH+ GL ++R +VE + G ++V+
Sbjct: 305 NPFIKSREQLERLREASPMCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLNGDIQVI 364
Query: 874 TATSTLAAGVNLPARRVIFRQPR-IGRD---FI--DGTRYRQMAGRAGRTGIDTKGESML 927
T+TLA G+NLPA V+ + + ++ ++ D + QM+GRAGR D G ++
Sbjct: 365 CTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVII 424
Query: 928 ICKPEEVKKIMGLLNESCPPLHS----CLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVR 983
+ + E V LLN C + S CL E +T I+++ I + E +++
Sbjct: 425 MTRRETVHLYENLLN-GCEVVESQLLPCLIEH---LTAEIVQLTISDITRAIE----WMK 476
Query: 984 CTLL 987
C+ L
Sbjct: 477 CSYL 480
Score = 47 (21.6 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 33/150 (22%), Positives = 56/150 (37%)
Query: 1438 IKIPDTTLSVQLGKNAIGTITSNRDLDLEVQDRPNRDPCLVNKDRACNKGPINAINASGG 1497
I + +T L + N + + NR + P C+ + D GP N +
Sbjct: 844 IDLHETLLLKKANNNKVNYKSENR---MPQYYPPMASACIADDDNPVTSGPSNRKDKKDD 900
Query: 1498 FDCFL---DRWEATHEFYFDIHYDKHSEANSGVLFE-IHGLAVCWEN-SPVYYVNLPKDL 1552
F D E E Y + D N +F+ I A C+ + +P+ + P
Sbjct: 901 MPSFKLIDDDSEEEKEPYVTMEEDDCVIINEHTVFDHIREKAKCFPSLNPLNPTSSPASG 960
Query: 1553 WSDHRRKDRFLIYGSSDKNVLTPEHQLEMI 1582
S +RK L+ +S + L P Q + +
Sbjct: 961 KSILKRKS--LVENNSPE--LDPLFQYDSV 986
Score = 46 (21.3 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 499 LKDCLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVA 558
LK DL S Y S+ +P C H D N++ A T +GK+ +
Sbjct: 6 LKSVSDLPGNFRSAFSFRYFNSLQSECFPL---CFHSD-----INMIISAPTGSGKTVLF 57
Query: 559 EILMLR 564
E+ +LR
Sbjct: 58 ELCILR 63
Score = 43 (20.2 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1233 LTTIPYVKGSRARALYKAGLRTPLAIAEA 1261
L +P + A+AL+ G+R+ A+AEA
Sbjct: 694 LKQLPGIGMVTAKALHSMGVRSFEALAEA 722
Score = 38 (18.4 bits), Expect = 3.7e-13, Sum P(4) = 3.7e-13
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 1082 YERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSN 1141
Y+ L + L +S+ ++ PYL++ G M + K LH +G+ S
Sbjct: 669 YKGTLSSTLLAKSLYQKLWDDSPYLLKQLPGIGMV-------TAKALHS-----MGVRSF 716
Query: 1142 NMLSDAQTLRV 1152
L++A R+
Sbjct: 717 EALAEADPRRI 727
>UNIPROTKB|F5H6Y7 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00946735
SMR:F5H6Y7 Ensembl:ENST00000547025 Ensembl:ENST00000547224
Ensembl:ENST00000547296 Ensembl:ENST00000548561
Ensembl:ENST00000552010 Uniprot:F5H6Y7
Length = 880
Score = 219 (82.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 61/157 (38%), Positives = 82/157 (52%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF-IDITSAIDALRRCPAGLDPVLE- 839
V++F SR C+ A L + S SE + + + LR L VL
Sbjct: 203 VVVFTFSRGRCDEQASG----LTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHM 258
Query: 840 -ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI- 897
E L G+ HH+G+ +E+VE + +GLV+VL AT T A GVN+PAR V+F R
Sbjct: 259 SELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH 318
Query: 898 -G---RDFIDGTRYRQMAGRAGRTGIDTKGESMLICK 930
G RD + G Y QMAGRAGR G+D G +L+CK
Sbjct: 319 DGSTFRDLLPG-EYVQMAGRAGRRGLDPTGTVILLCK 354
>UNIPROTKB|Q8N3C0 [details] [associations]
symbol:ASCC3 "Activating signal cointegrator 1 complex
subunit 3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006307
GO:GO:0008283 EMBL:CH471051 GO:GO:0006351 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:10973
KO:K01529 OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AL834463 EMBL:AK315197
EMBL:AL591585 EMBL:AL121965 EMBL:AL133338 EMBL:AL356122 EMBL:Z86062
EMBL:BC050681 EMBL:BC125211 EMBL:BC125212 EMBL:BC026066
EMBL:AY013288 EMBL:AJ223948 IPI:IPI00430472 RefSeq:NP_006819.2
RefSeq:NP_071374.1 UniGene:Hs.486031 ProteinModelPortal:Q8N3C0
SMR:Q8N3C0 IntAct:Q8N3C0 MINT:MINT-1183138 STRING:Q8N3C0
PhosphoSite:Q8N3C0 DMDM:158518649 PaxDb:Q8N3C0 PRIDE:Q8N3C0
DNASU:10973 Ensembl:ENST00000369143 Ensembl:ENST00000369162
Ensembl:ENST00000522650 GeneID:10973 KEGG:hsa:10973 UCSC:uc003pqk.3
GeneCards:GC06M100956 H-InvDB:HIX0021958 HGNC:HGNC:18697
HPA:HPA031608 HPA:HPA031609 HPA:HPA031610 MIM:614217
neXtProt:NX_Q8N3C0 PharmGKB:PA134890913 eggNOG:COG1204
HOGENOM:HOG000152625 HOVERGEN:HBG051896 InParanoid:Q8N3C0
PhylomeDB:Q8N3C0 ChiTaRS:ASCC3 GenomeRNAi:10973 NextBio:41694
ArrayExpress:Q8N3C0 Bgee:Q8N3C0 CleanEx:HS_ASCC3
Genevestigator:Q8N3C0 GermOnline:ENSG00000112249 Uniprot:Q8N3C0
Length = 2202
Score = 222 (83.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 83/301 (27%), Positives = 141/301 (46%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALY------ETNFRPVPL-EEYIKVGNAIYSKKMDVVR 752
++I+G+SAT+PN VA +L Y + FRPVPL + ++ + A KM +
Sbjct: 642 IRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQTFLGIKCA---NKMQQLN 698
Query: 753 TILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812
N+ +++++ V+ GH V++F +R TA + + K
Sbjct: 699 ------NMDEVCYENVLKQ----VKAGHQVMVFVHARNATVRTAMSLIERAKNCGHIPFF 748
Query: 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872
++ D A ++R + + E P G + HHAG+ ++R +VE + G ++V
Sbjct: 749 FPTQGHDYVLAEKQVQR---SRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKV 805
Query: 873 LTATSTLAAGVNLPARRVIFRQPRIGR----DFID-GTR-YRQMAGRAGRTGIDTKGESM 926
L T+TLA GVNLPA VI + +I F+D G Q+ GRAGR D GE +
Sbjct: 806 LVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGI 865
Query: 927 LICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTL 986
+I +++ + LL + P+ S E +A E+ G + E + +++ T
Sbjct: 866 IITTHDKLSHYLTLLTQR-NPIESQFLESLADNLNA--EIALGTVTNVEEAV-KWISYTY 921
Query: 987 L 987
L
Sbjct: 922 L 922
Score = 188 (71.2 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 87/295 (29%), Positives = 130/295 (44%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYET-NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IVG+S + N +ADWL NFRP ++V + + R + +
Sbjct: 1484 VRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPR--MASM 1541
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
N K + VLIF SSR+ TA + FL + +
Sbjct: 1542 N---KPAFQAIRSHSPA----KPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDER 1594
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
++ + I +R D L+ TL G+ HHAGL +R+ VE + V+VL ATST
Sbjct: 1595 EMENIIATVR------DSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATST 1648
Query: 879 LAAGVNLPARRVIFRQPRI--G--RDFIDG--TRYRQMAGRAGRTGIDTKGESMLICKPE 932
LA GVN PA VI + G R ++D T QM GRAGR D +G+++++
Sbjct: 1649 LAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILV--H 1706
Query: 933 EVKK--IMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCT 985
++KK L E P S L + H E+ AGG + + +D Y+ T
Sbjct: 1707 DIKKDFYKKFLYEPFPVESSLLGVLSD---HLNAEI-AGGTITSKQDALDYITWT 1757
Score = 96 (38.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 44/170 (25%), Positives = 77/170 (45%)
Query: 501 DCLDLSSWLPSEI--CSIYKKR-GISKLYPWQVECLHVDGVLQRR--NLVYCASTSAGKS 555
+ LDL LP C Y+ S P Q + H L N++ A T +GK+
Sbjct: 1301 ELLDLQP-LPITALGCKAYEALYNFSHFNPVQTQIFHT---LYHTDCNVLLGAPTGSGKT 1356
Query: 556 FVAEILMLR--RLISTGKMALLVLPYVSICAEKAEHLEVLLEP-LGRHVRSYYGNQGGG- 611
AE+ + R T K A+ + P ++ E+ + +V +E LG+ V G+
Sbjct: 1357 VAAELAIFRVFNKYPTSK-AVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDM 1415
Query: 612 -SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
S+ K + V T EK + + + ++ I++IDE+H++ ++ RG
Sbjct: 1416 KSIAK-ADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEE-RG 1463
Score = 43 (20.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1388 LLETSDNELSALVEGGSITELQQKFD 1413
LL + L+A + GG+IT Q D
Sbjct: 1727 LLGVLSDHLNAEIAGGTITSKQDALD 1752
>FB|FBgn0039117 [details] [associations]
symbol:tst "twister" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 EMBL:AJ276896
ProteinModelPortal:Q9BI21 SMR:Q9BI21 STRING:Q9BI21 PaxDb:Q9BI21
PRIDE:Q9BI21 FlyBase:FBgn0039117 InParanoid:Q9BI21
OrthoDB:EOG46HDRK ArrayExpress:Q9BI21 Bgee:Q9BI21 Uniprot:Q9BI21
Length = 1197
Score = 189 (71.6 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 41/98 (41%), Positives = 61/98 (62%)
Query: 837 VLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR 896
VL++ L G+ HH+G+ +E+VE ++ GLV++L AT T A GVN+PAR V+F +
Sbjct: 573 VLKDALERGIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCK 632
Query: 897 I--GRDF--IDGTRYRQMAGRAGRTGIDTKGESMLICK 930
G + + Y QMAGRAGR G D G ++++CK
Sbjct: 633 KFDGLEMRNLKPGEYIQMAGRAGRRGHDETGTAIIMCK 670
Score = 75 (31.5 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 696 PAHGLQIVGMSATMPNVAAVADWLQAA----LY--ETNFRPVPLEEYIKVG 740
P H + I+ +SAT+PN +ADW+ + +Y T RPVPL ++ G
Sbjct: 397 PEH-VNIIMLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTG 446
Score = 62 (26.9 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
Identities = 35/143 (24%), Positives = 63/143 (44%)
Query: 526 YPWQVECLHVDGVL--QRRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLPYVSI 582
+P++++ +L ++R V+ A+ TSAGK+ VAE I+ K L Y S
Sbjct: 259 FPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYA-----IALSKRDLTRTIYTS- 312
Query: 583 CAEKAEHLEVLLEPLGRHVRSYYGNQG--GGSLPKDTSVAVCTIEKANSLVNRMLEEGR- 639
++ L R R + + G G L + + A C I ++ ML G
Sbjct: 313 ------PIKALSNQKYRDFRKTFKDVGLITGDLQIEPT-ASCLI-MTTEILRSMLYCGSD 364
Query: 640 -LSEIGIIVIDELHMVADQNRGY 661
++ ++ DE+H + + RG+
Sbjct: 365 VTRDLEWVIFDEVHYINNPERGH 387
>DICTYBASE|DDB_G0277211 [details] [associations]
symbol:DDB_G0277211 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0277211 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000019 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC RefSeq:XP_642686.1
ProteinModelPortal:Q86K90 EnsemblProtists:DDB0233454 GeneID:8620875
KEGG:ddi:DDB_G0277211 InParanoid:Q86K90 Uniprot:Q86K90
Length = 1378
Score = 198 (74.8 bits), Expect = 4.9e-13, Sum P(5) = 4.9e-13
Identities = 55/149 (36%), Positives = 77/149 (51%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLE-- 839
V+IF S+ C+ A + + + N S FI+ ++ L L +L+
Sbjct: 692 VIIFSFSKNKCQEYAGSLGQSVNLTQGNEKSQIRVFIE--QSLGRLCEDDKSLPQILQMK 749
Query: 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI-- 897
E L G+ HH GL +E+VE + K LV+VL AT T A GVN+PA+ V++ R
Sbjct: 750 ELLERGIGVHHGGLLPIVKELVEILFSKSLVKVLFATETFAMGVNMPAKTVVYSSTRKHD 809
Query: 898 G---RDFIDGTRYRQMAGRAGRTGIDTKG 923
G RD I G Y QM+GRAGR G+D G
Sbjct: 810 GITFRDLIPG-EYTQMSGRAGRRGLDKVG 837
Score = 69 (29.3 bits), Expect = 4.9e-13, Sum P(5) = 4.9e-13
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 700 LQIVGMSATMPNVAAVADWL----QAALYE--TNFRPVPLEEYIKV-GNAIYSKKMDVVR 752
+++V +SAT+ N A W+ Q +Y T RP+PLE YI N ++ K +D R
Sbjct: 571 VKMVFLSATVSNPLEFAQWIGRTKQLPIYVIGTTKRPIPLEHYIHTPSNELF-KIVDSNR 629
Query: 753 TIL 755
L
Sbjct: 630 NFL 632
Score = 69 (29.3 bits), Expect = 4.9e-13, Sum P(5) = 4.9e-13
Identities = 31/140 (22%), Positives = 60/140 (42%)
Query: 526 YPWQVECLHVDGVL---QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSI 582
YP+ ++ ++ Q ++ A TSAGK+ +AE + + + A+ P ++
Sbjct: 430 YPFDLDSFQKQAIVHMEQGESVFITAHTSAGKTVIAEYAIAMAAKNMTR-AIYTSPIKAL 488
Query: 583 CAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGR--L 640
+K + +G G S+ +S V T E ++ ML +G +
Sbjct: 489 SNQKFRDFKNTFNDVGLIT-------GDVSISPSSSCLVLTTE----ILRSMLYKGADLI 537
Query: 641 SEIGIIVIDELHMVADQNRG 660
+I ++ DE+H + D RG
Sbjct: 538 RDIEWVIFDEVHYLNDLERG 557
Score = 43 (20.2 bits), Expect = 4.9e-13, Sum P(5) = 4.9e-13
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 1075 EPDWELYYERFLELSALDQSVGN 1097
EPD + YY+ F + +Q + N
Sbjct: 929 EPDIDHYYKLFSQAKKYNQQIQN 951
Score = 42 (19.8 bits), Expect = 4.9e-13, Sum P(5) = 4.9e-13
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 87 KDEKNQALLSDQAQPQATQKVISRCSSKEGNSEVGCH--MKDGSAHIPE 133
+D K Q Q Q Q Q+ + KE EV +KD I E
Sbjct: 264 QDNKQQQQQQQQQQQQQQQQQQQQEKEKEEEEEVNLRYTLKDLEREIEE 312
Score = 41 (19.5 bits), Expect = 7.7e-13, Sum P(5) = 7.7e-13
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 1567 SSDKNVLTPEHQLEMIKQRWKRIGEI 1592
SS K + E Q+E ++Q+ K++ ++
Sbjct: 898 SSQKELPGIEKQIEKLQQQQKQLAQV 923
Score = 38 (18.4 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 430 KCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDSPTNVIKK 480
K ++N++ + ++ D V H + L + G+D+ D N+ K+
Sbjct: 214 KSPNNNSTNSTNNNNQTPIDWVQFWHSKSLLVKPPGLDNGILDFNENINKQ 264
>CGD|CAL0003134 [details] [associations]
symbol:orf19.3980 species:5476 "Candida albicans" [GO:0042788
"polysomal ribosome" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 CGD:CAL0003134 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AACQ01000012 EMBL:AACQ01000011
RefSeq:XP_721889.1 RefSeq:XP_722050.1 ProteinModelPortal:Q5AK41
STRING:Q5AK41 GeneID:3636313 GeneID:3636419 KEGG:cal:CaO19.11463
KEGG:cal:CaO19.3980 Uniprot:Q5AK41
Length = 1929
Score = 218 (81.8 bits), Expect = 1.1e-12, Sum P(5) = 1.1e-12
Identities = 78/263 (29%), Positives = 130/263 (49%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
+++VG+SAT+PN VAD+L ++ +FRPVPL++ I +G + K +
Sbjct: 429 IRVVGLSATLPNYMDVADFLGVNRSVGMFYFDQSFRPVPLQQQI-LG--VRGK----AGS 481
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813
L N+ D +L D + +G V++F SRK +TAR F++ + V
Sbjct: 482 KLARENI---DKVSYEKLAD-YINQGLQVMVFVHSRKDTVNTAR---TFIR---MAVEYG 531
Query: 814 DSEFIDITSA--IDALRRCPAGLD--PVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL 869
+SE + + A + +R + + L+E G HHAG+ +R + E + G
Sbjct: 532 ESEIFNCSEADSYEKYKREASNKNRSKELKELFVHGFGVHHAGMLRSDRNLTEKMFESGA 591
Query: 870 VRVLTATSTLAAGVNLPARRVIFRQPRI----GRDFID-G-TRYRQMAGRAGRTGIDTKG 923
++VL T+TLA GVNLPA VI + ++ F+D G + Q+ GRAGR + G
Sbjct: 592 IKVLCCTATLAWGVNLPAAVVIVKGTQVYDSKAGGFVDLGISDVIQIFGRAGRPQYEKFG 651
Query: 924 ESMLICKPEEVKKIMGLLNESCP 946
+L +++ + LL + P
Sbjct: 652 TGILCTTSDKLDHYVSLLTQQHP 674
Score = 206 (77.6 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 93/302 (30%), Positives = 138/302 (45%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNF----RPVPLEEYIKVGNAIYSKKMDVVRTIL 755
++++GMS + N +A WL NF RPVPL+ YI G +++T+
Sbjct: 1271 IRLLGMSTAVSNAFDMAGWLGVKNGLFNFPQSVRPVPLQMYID-GFPENLAFCPLMKTMN 1329
Query: 756 TAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815
A + K H VLIF +SR+ TA + + S+
Sbjct: 1330 KPAFMAIKQ--H---------SPNKPVLIFVASRRQTRLTALDLIHLC-----GMESNPR 1373
Query: 816 EFIDITSAIDALRRCPAGL-DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874
F+ I+ D L+ + D L +L G+ HHAGL +R++ + +G +++L
Sbjct: 1374 RFLKISD--DELQDILENVKDDTLRLSLQFGMGLHHAGLVESDRQISHKLFEQGKIQILI 1431
Query: 875 ATSTLAAGVNLPARRVI-----FRQPRIG--RDFIDGTRYRQMAGRAGRTGIDTKGESML 927
ATSTLA GVNLPA VI F +I RD +D T QM GRAGR DT G +++
Sbjct: 1432 ATSTLAWGVNLPAHLVIIKGTQFFDAKIEAYRD-MDLTDILQMMGRAGRPAYDTSGIAIV 1490
Query: 928 ICKPEEVKKIM--GLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCT 985
K E KK+ LN P + S L + + H E+ AG I T ++ ++ T
Sbjct: 1491 YTK--ESKKVFYKHFLNLGFP-VESSLHKVLDN--HIGAEISAGTIT-TRQEAMDFLTWT 1544
Query: 986 LL 987
L
Sbjct: 1545 FL 1546
Score = 76 (31.8 bits), Expect = 3.0e-11, Sum P(4) = 3.0e-11
Identities = 37/181 (20%), Positives = 74/181 (40%)
Query: 493 PSSSGMLKDCLDLSSWLP------SEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVY 546
PS+ + D L L LP ++ IY + P Q H + + V+
Sbjct: 1078 PSNETIKTDLLHLQP-LPVTALHNPDVEQIYSSK-FKYFNPMQTMVFH--SLYNTNSSVF 1133
Query: 547 CAS-TSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY 604
S T +GK+ VAE+ + + + P ++ E+ + E + ++
Sbjct: 1134 VGSPTGSGKTVVAELAIWHAFNEFPSSKVVYIAPMKALVRERVDDWR---ERICKNTSHR 1190
Query: 605 YGNQGGGSLP-----KDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659
G SLP K+ + + T EK + + + ++ ++++DE+H++A +R
Sbjct: 1191 LVELTGDSLPTIQEVKEADIIITTPEKFDGISRNWQTRKFVQQVSLVIMDEIHLLAS-DR 1249
Query: 660 G 660
G
Sbjct: 1250 G 1250
Score = 72 (30.4 bits), Expect = 1.1e-12, Sum P(5) = 1.1e-12
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 576 VLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKANSLVNRM 634
V P ++ AE E L+ LG +VR G+ Q +T + V T EK + + +
Sbjct: 323 VAPLKALAAEIVEKYSKKLKWLGINVRELTGDMQLTRQEIINTQIIVTTPEKWDVVTRKS 382
Query: 635 LEEGRL-SEIGIIVIDELHMVADQNRG 660
+ L +++ +++IDE+H++ ++RG
Sbjct: 383 TGDSELVAKVKLLIIDEVHLL-HEDRG 408
Score = 50 (22.7 bits), Expect = 1.1e-12, Sum P(5) = 1.1e-12
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL 566
N++ CA T AGK+ VA + +L +
Sbjct: 272 NMLVCAPTGAGKTDVALLTILHTI 295
Score = 47 (21.6 bits), Expect = 1.1e-12, Sum P(5) = 1.1e-12
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 1381 LESAGEKLLETSDNELSALVEGGSITELQQKFD 1413
+ES+ K+L DN + A + G+IT Q+ D
Sbjct: 1510 VESSLHKVL---DNHIGAEISAGTITTRQEAMD 1539
Score = 44 (20.5 bits), Expect = 3.0e-11, Sum P(4) = 3.0e-11
Identities = 19/87 (21%), Positives = 34/87 (39%)
Query: 50 DNYL-KNSQDDGHTSKQSLLSRHEVVKR-NLSLEIDKYSKDEKNQALLSDQAQPQATQKV 107
D YL NS + + L + +++ ++S E D E+ L + A +V
Sbjct: 776 DFYLLSNSVEIFNQMMNPLATEADILSMISMSSEFDSIKFREEESKELKQLVEEDAPCQV 835
Query: 108 ISRCSSKEGNSEVGCHMKDGSAHIPES 134
S +G + + AHI +S
Sbjct: 836 AGDVDSPQGKTNILLQAFVSQAHIKDS 862
Score = 39 (18.8 bits), Expect = 6.7e-12, Sum P(5) = 6.7e-12
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 1381 LESAGEKLLETSDNELSALVE 1401
+ES + L+ SD+EL ++E
Sbjct: 1368 MESNPRRFLKISDDELQDILE 1388
Score = 38 (18.4 bits), Expect = 1.1e-12, Sum P(5) = 1.1e-12
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 1918 KINARDFFIPSQENWILLAADYSQIEL 1944
K+ F P +E+W ++ D ++ L
Sbjct: 1853 KVYCPHFPKPQRESWFVILHDGEELHL 1879
>UNIPROTKB|F1MFR1 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:DAAA02007913 EMBL:DAAA02007914
EMBL:DAAA02007915 EMBL:DAAA02007916 IPI:IPI00839892
Ensembl:ENSBTAT00000027789 Uniprot:F1MFR1
Length = 1438
Score = 212 (79.7 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 86/299 (28%), Positives = 137/299 (45%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEY---IKVGNAIYS-KKMDVVRTIL 755
++ V +SAT+PN +A+WL E + + ++E +K+ + D
Sbjct: 453 MRFVAVSATIPNAEDIAEWLSDG--ERSAVCLKMDERHRPVKLRKVVLGFPSSDNQTEFK 510
Query: 756 TAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815
L K I D+ L+FC++RKG + A S+ V D+
Sbjct: 511 FDLTLNYKIASIIQTYSDQ-----KPTLVFCATRKGVQQAA----------SVLV--KDA 553
Query: 816 EFIDITSAIDALRRCPAGL-DPVLE-ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVL 873
+FI L++C + D L + L GVAYHHAG+ + +R+VVE + G + VL
Sbjct: 554 KFIMTVEQKQRLQKCAYSIKDSKLRVDILIHGVAYHHAGMELSDRKVVEGAFTVGDIPVL 613
Query: 874 TATSTLAAGVNLPARRVIFRQPR--IGRDFID--GTRYRQMAGRAGRTGIDTKGESMLIC 929
TSTLA GVNLPA V+ + G F + T QM GRAGR DT ++++
Sbjct: 614 FTTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFDTTATAVIMT 673
Query: 930 KPEEVKKIMGLLNESCPP-LHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
+ +K + +L +C + S L ++ + H E+V I + ++R TLL
Sbjct: 674 RLSTKEKYIQML--ACSDTIESSLH--RHLIEHLNAEIVLHTITNVNIALE-WIRSTLL 727
Score = 146 (56.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 69/304 (22%), Positives = 131/304 (43%)
Query: 518 KKRGISKLYPW--QVECLHVDGVLQR-RNLVYCASTSAGKSFVAEILMLRRLIST----G 570
K R I K +P+ ++ D +L RN V CA T +GK+ V E+ + R L+
Sbjct: 272 KFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWS 331
Query: 571 KMALLVL-PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSL--PKDTSVAVCTIEKA 627
+ ++ + P ++C+++ + + P+G + + G+ L + + + T EK
Sbjct: 332 NIKIVYMAPIKALCSQRFDDWKKKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKW 391
Query: 628 NSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXX 687
+S+ + + + + + +IDE+H+V D+NRG +
Sbjct: 392 DSMTRKWRDNSLVHLVRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQILSPAVENTNSII 451
Query: 688 XXXXXKADPAHGLQIVGMSATMPNVAAVADWL----QAAL---YETNFRPVPLEEYIKVG 740
P ++ V +SAT+PN +A+WL ++A+ + RPV L + + +G
Sbjct: 452 --------P---MRFVAVSATIPNAEDIAEWLSDGERSAVCLKMDERHRPVKLRKVV-LG 499
Query: 741 NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVS 800
+ + + LT L K I D+ L+FC++RKG + A +
Sbjct: 500 FPSSDNQTEF-KFDLT---LNYKIASIIQTYSDQ-----KPTLVFCATRKGVQQAASVLV 550
Query: 801 KFLK 804
K K
Sbjct: 551 KDAK 554
>UNIPROTKB|F1NTD6 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006307 "DNA dealkylation involved in
DNA repair" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 KO:K01529 GO:GO:0043140
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
EMBL:AADN02002229 EMBL:AADN02002230 EMBL:AADN02002231
EMBL:AADN02002232 EMBL:AADN02002233 EMBL:AADN02002234
IPI:IPI00590520 RefSeq:XP_419816.1 UniGene:Gga.31679
ProteinModelPortal:F1NTD6 PRIDE:F1NTD6 GeneID:421790
KEGG:gga:421790 Uniprot:F1NTD6
Length = 2211
Score = 243 (90.6 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 87/304 (28%), Positives = 143/304 (47%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALY------ETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++I+G+SAT+PN VA +L Y ++ FRPVPL + +G ++T
Sbjct: 651 IRILGLSATLPNYLDVATFLHVNPYIGLFYFDSRFRPVPLGQTF-IG----------IKT 699
Query: 754 ILTAANLGGKDPDHIVELCDE-VVQE---GHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809
L +H+ E+C E V+++ GH V++F +R TA + + K
Sbjct: 700 TNKVQQL-----NHMDEVCYENVLKQIMAGHQVMVFVHARNATVRTAMALREKAKNNGHI 754
Query: 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL 869
H + D A ++R + L E P G + HHAG+ ++R +VE + G
Sbjct: 755 CHFLSPQGSDYGQAEKQVQR---SRNKQLRELFPDGFSIHHAGMLRQDRSLVENLFSNGH 811
Query: 870 VRVLTATSTLAAGVNLPARRVIFRQPRIGR----DFID-GTR-YRQMAGRAGRTGIDTKG 923
++VL T+TLA GVNLPA V+ + +I F+D G Q+ GRAGR D G
Sbjct: 812 IKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFG 871
Query: 924 ESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVR 983
E ++I +++ + LL + P+ S E +A E+ G + E + +++
Sbjct: 872 EGIIITTHDKLSHYLTLLTQQ-NPIESQFLESLADNLNA--EIALGTVTNVEEAV-KWIS 927
Query: 984 CTLL 987
T L
Sbjct: 928 YTYL 931
Score = 173 (66.0 bits), Expect = 6.2e-10, Sum P(4) = 6.2e-10
Identities = 84/295 (28%), Positives = 127/295 (43%)
Query: 700 LQIVGMSATMPNVAAVADWLQA-ALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
+++VG+S + N +ADWL + NFRP ++V + + R +
Sbjct: 1493 VRVVGLSTALANARDLADWLNINQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPR--MARM 1550
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
N K + VLIF SSR+ T+ + FL +
Sbjct: 1551 N---KPAFQAIRSHSPA----KPVLIFVSSRRQTRLTSLDLIAFLATEDDPKQWLKMDER 1603
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
++ I +R D L+ TL G+ HHAGL +R+ VE + ++VL ATST
Sbjct: 1604 EMNDIIGTVR------DSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATST 1657
Query: 879 LAAGVNLPARRVIFRQPRI--G--RDFIDG--TRYRQMAGRAGRTGIDTKGESMLICKPE 932
LA GVN PA VI + G R ++D T QM GRAGR D +G+++++
Sbjct: 1658 LAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILV--H 1715
Query: 933 EVKK--IMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCT 985
++KK L E P S L + H E+ AG I + +D Y+ T
Sbjct: 1716 DIKKDFYKKFLYEPFPVESSLLDVLAD---HLNAEIAAGTIT-SKQDAMDYITWT 1766
Score = 98 (39.6 bits), Expect = 6.2e-10, Sum P(4) = 6.2e-10
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 543 NLVYCASTSAGKSFVAEILMLR--RLISTGKMALLVLPYVSICAEKAEHLEVLLEP-LGR 599
N++ A T +GK+ AE+ + R T K A+ + P ++ E+ E +V +E LG+
Sbjct: 1353 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSK-AVYIAPLKALVRERIEDWKVRIEEKLGK 1411
Query: 600 HVRSYYGNQGGGSLP-KDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658
V G+ + V T EK + + + ++ I++IDE+H++ D+
Sbjct: 1412 KVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSILIIDEIHLLGDE- 1470
Query: 659 RG 660
RG
Sbjct: 1471 RG 1472
Score = 46 (21.3 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 12/70 (17%), Positives = 25/70 (35%)
Query: 1695 RWKNQMRRAAHNGC---CRRVAQTRALCSVLWKLLVSXXXXXXXXXXXXXXVNVLADMEL 1751
+W Q R++ H G + + A C + S N L+ + +
Sbjct: 1986 KWSQQKRKSVHGGYQGPIECLPELMAACEGKEDVFASIVDSELQTAHISQAWNFLSRLPI 2045
Query: 1752 WGIGVDMEGC 1761
+ + ++GC
Sbjct: 2046 LNVSLSIKGC 2055
Score = 39 (18.8 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1388 LLETSDNELSALVEGGSITELQQKFD 1413
LL+ + L+A + G+IT Q D
Sbjct: 1736 LLDVLADHLNAEIAAGTITSKQDAMD 1761
Score = 37 (18.1 bits), Expect = 6.2e-10, Sum P(4) = 6.2e-10
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 300 GFFAHTDIG 308
GFF+ TD+G
Sbjct: 983 GFFSSTDLG 991
>ZFIN|ZDB-GENE-061207-43 [details] [associations]
symbol:hfm1 "HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-061207-43 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 EMBL:BX927353 EMBL:CABZ01046504
IPI:IPI00897259 ProteinModelPortal:F1QWJ0
Ensembl:ENSDART00000099851 Bgee:F1QWJ0 Uniprot:F1QWJ0
Length = 1049
Score = 215 (80.7 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 78/280 (27%), Positives = 131/280 (46%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAAN 759
++ V +SAT+PN+ V++WL E+ P E + + +K+ + + N
Sbjct: 181 VRFVAVSATIPNIQDVSEWLSD---ESG--PATCLEMDESHRPVKLRKVVLGFPCGSNQN 235
Query: 760 LGGKDPDHIVELCD--EVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF 817
D +L + + + L+FCS+RKG + +A ++K D+ F
Sbjct: 236 EFKFDLSLNYKLANIIQTYSDQKPTLVFCSTRKGVQQSASVLAK------------DARF 283
Query: 818 I-DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT 876
I I ++ + LD L + G+ YHHAG+ V +R++ E + G + VL T
Sbjct: 284 IMSIDHKQRLVKYANSLLDAKLRDLFVYGIGYHHAGMDVSDRKITENAFTVGDLPVLFTT 343
Query: 877 STLAAGVNLPARRVIFRQPR--IG---RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931
STLA GVN+PA V+ + +G ++ + QM GRAGR DT ++++ +P
Sbjct: 344 STLAMGVNMPAHLVVIKSTMHYVGGACEEYSEADLL-QMIGRAGRPQFDTTATAVIMTRP 402
Query: 932 EEVKKIMGLLNE-SC--PPLHSCLSEDKNG--MTHAILEV 966
+ K M L+ C LH+ L E N + H I +V
Sbjct: 403 QTKDKYMHFLSGLDCIESSLHTNLVEHLNAEIVLHTISDV 442
Score = 172 (65.6 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 72/301 (23%), Positives = 133/301 (44%)
Query: 518 KKRGISKLYPW--QVECLHVDGVL-QRRNLVYCASTSAGKSFVAEILMLRRLISTGK--- 571
K R + K +P+ V+ +D VL +N V CA T +GK+ + E+ ++R LI +
Sbjct: 1 KFRSVFKDFPYFNYVQSQALDDVLYSNKNFVACAPTGSGKTVLFELAIVRLLIEASEPWH 60
Query: 572 --MALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSL--PKDTSVAVCTIEKA 627
A+ + P ++C+++ ++ + PLG + G+ +D + T EK
Sbjct: 61 NVRAVYMAPIKALCSQQYDNWKQKFGPLGLKCKELTGDTEIDDFFEIQDAHLIFTTAEKW 120
Query: 628 NSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXX 687
+S+ R + L+ I + ++DE+H+V D+ RG A
Sbjct: 121 DSMTRRWKDNCLLTSIRLFLVDEVHVVKDKTRG------------ATLEVVVSRMKTMHF 168
Query: 688 XXXXXKADPAHGLQIVGMSATMPNVAAVADWLQ-----AALYETN--FRPVPLEEYIKVG 740
+ ++ V +SAT+PN+ V++WL A E + RPV L + + +G
Sbjct: 169 YRQAINPESKASVRFVAVSATIPNIQDVSEWLSDESGPATCLEMDESHRPVKLRKVV-LG 227
Query: 741 NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVS 800
S + + + +L K + I D+ L+FCS+RKG + +A ++
Sbjct: 228 FPCGSNQNEFKFDL----SLNYKLANIIQTYSDQ-----KPTLVFCSTRKGVQQSASVLA 278
Query: 801 K 801
K
Sbjct: 279 K 279
Score = 49 (22.3 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 1370 LEANQISKKVDLESAGEKLLETSDNELSALVEGGSITELQQKF 1412
L++N S +L+ EKL ET L ++ G+ Q+F
Sbjct: 904 LQSNVSSYLDNLKMRNEKLCETPVKRLKMMMNNGTAAVSMQQF 946
Score = 39 (18.8 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 1520 HSEANSGVLFEIHGLAVC-----WENSP 1542
HS++N LA C WENSP
Sbjct: 632 HSKSNFAAQLNALILAKCFRAKLWENSP 659
Score = 37 (18.1 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 1902 MSNEDIYGGNAEVDHCKINAR 1922
+ N YG EVD C I +
Sbjct: 459 LKNPKHYGFPPEVDKCGIETK 479
>UNIPROTKB|I3LAH4 [details] [associations]
symbol:I3LAH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00640000091272 EMBL:CU104757
Ensembl:ENSSSCT00000025204 OMA:FMKEGSA Uniprot:I3LAH4
Length = 197
Score = 179 (68.1 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 59/211 (27%), Positives = 98/211 (46%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++I+G+SAT+PN VA +L ++ FRPVPL + +G V++
Sbjct: 2 IRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPLGQTF-LG----------VKS 50
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813
L D + E + V+ GH V++F +R +T R +++ N
Sbjct: 51 ANKVQQLNNMD-EVCYESVLKQVKAGHQVMVFVHARN---ATVRTAMSLIERAKNN--GQ 104
Query: 814 DSEFIDITSAI--DALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
S F+ A ++ + + E P G + HHAG+ ++R +VE+ + G ++
Sbjct: 105 ISYFLPTQGPEYGHAEKQVQKSRNKQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIK 164
Query: 872 VLTATSTLAAGVNLPARRVIFRQPRIGRDFI 902
VL T+TLA GVNLPA VI + F+
Sbjct: 165 VLVCTATLAWGVNLPAHAVIIKVRSFAHGFV 195
>GENEDB_PFALCIPARUM|PF14_0112 [details] [associations]
symbol:PF14_0112 "POM1, putative" species:5833
"Plasmodium falciparum" [GO:0005739 "mitochondrion" evidence=ISS]
[GO:0020011 "apicoplast" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002562 InterPro:IPR007694
InterPro:IPR012337 Pfam:PF00476 Pfam:PF01612 PRINTS:PR00868
PROSITE:PS51199 SMART:SM00474 SMART:SM00482 InterPro:IPR006171
GO:GO:0005739 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014187 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003678
GO:GO:0003887 GO:GO:0032508 KO:K02335 GO:GO:0020011
GenomeReviews:AE014187_GR SMART:SM00493 HSSP:P00582
RefSeq:XP_001348285.1 ProteinModelPortal:Q8ILY1
EnsemblProtists:PF14_0112:mRNA GeneID:811693 KEGG:pfa:PF14_0112
EuPathDB:PlasmoDB:PF3D7_1411400 HOGENOM:HOG000281341
ProtClustDB:CLSZ2446708 Uniprot:Q8ILY1
Length = 2016
Score = 160 (61.4 bits), Expect = 5.2e-12, Sum P(5) = 5.2e-12
Identities = 49/185 (26%), Positives = 87/185 (47%)
Query: 1920 NARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRS 1979
N R+ FIP+ N I + AD+ QIEL++ A + D ++ + + D+ T+ A+ T ++
Sbjct: 1781 NIREIFIPNDNN-IFIIADFKQIELKIAAEITNDEIMLKAYNN-NIDLHTLTASIITKKN 1838
Query: 1980 EDSVGSQERDQTKRLIYGILYGMGPNTLSEQ------LNCSSNEAKEKIKSFKSSFPGVA 2033
+ ++R K + +G++YGM L LN S ++ SF + G+
Sbjct: 1839 IPDINKEDRHIAKAINFGLIYGMNYVNLKNYANTYYGLNMSLDQCLYFYNSFFEHYKGIY 1898
Query: 2034 SWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIA 2093
W H V Y +L RK F +A+N QG+ ADI+K+A
Sbjct: 1899 KW-HNQVKQKRALQY-STLSNRKVIFPYFSF----------TKALNYPVQGTCADILKLA 1946
Query: 2094 MINIH 2098
+++++
Sbjct: 1947 LVDLY 1951
Score = 97 (39.2 bits), Expect = 5.2e-12, Sum P(5) = 5.2e-12
Identities = 43/147 (29%), Positives = 67/147 (45%)
Query: 1746 LADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKL 1805
+ DMEL GI VD+E ++ N + +L +EK +K VL K
Sbjct: 1637 ICDMELNGIKVDLENLQKSTNEILNELN-IEKDNLKKK-LKDENINVNSQQQVLKALQKN 1694
Query: 1806 PIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMST 1865
+ + NK ++ S D + + L HE I ++ +R L KL + + I+ T
Sbjct: 1695 NVRDISNKLIENTS-DSNLKNFLNHEEIIS--LRNYRRLYKLYSAFYLKLP--LHINTKT 1749
Query: 1866 QKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
K +H + Q T +GR S E+PNLQ
Sbjct: 1750 NK--IHTTFNQLKTFSGRFSSEKPNLQ 1774
Score = 89 (36.4 bits), Expect = 5.2e-12, Sum P(5) = 5.2e-12
Identities = 20/64 (31%), Positives = 39/64 (60%)
Query: 2115 NFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAA---LLLVPLLVKIQVGS 2171
N + + G+ ++L VHDE+++EV+ +EA+ ++ + ME++A L V V +++
Sbjct: 1953 NLKDINGK--IILCVHDEIIIEVNKKFQEEALKILVQSMENSASYFLKKVKCEVSVKIAE 2010
Query: 2172 TWGS 2175
WGS
Sbjct: 2011 NWGS 2014
Score = 38 (18.4 bits), Expect = 5.2e-12, Sum P(5) = 5.2e-12
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 811 HSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREV 860
HS F D+ I + P ++ V +T+PS Y + GL + E +
Sbjct: 665 HSQILNFNDLRQRILEELKYPDRINGVKSKTIPSLNKYLY-GLRMGELSI 713
Score = 37 (18.1 bits), Expect = 5.2e-12, Sum P(5) = 5.2e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1117 ISSKLRDSTKGLHG 1130
I+SKL D K ++G
Sbjct: 1550 IASKLLDKNKNMYG 1563
>UNIPROTKB|Q8ILY1 [details] [associations]
symbol:POM1 "Pfprex" species:36329 "Plasmodium falciparum
3D7" [GO:0005739 "mitochondrion" evidence=ISS] [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002562 InterPro:IPR007694 InterPro:IPR012337
Pfam:PF00476 Pfam:PF01612 PRINTS:PR00868 PROSITE:PS51199
SMART:SM00474 SMART:SM00482 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014187
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003678 GO:GO:0003887
GO:GO:0032508 KO:K02335 GO:GO:0020011 GenomeReviews:AE014187_GR
SMART:SM00493 HSSP:P00582 RefSeq:XP_001348285.1
ProteinModelPortal:Q8ILY1 EnsemblProtists:PF14_0112:mRNA
GeneID:811693 KEGG:pfa:PF14_0112 EuPathDB:PlasmoDB:PF3D7_1411400
HOGENOM:HOG000281341 ProtClustDB:CLSZ2446708 Uniprot:Q8ILY1
Length = 2016
Score = 160 (61.4 bits), Expect = 5.2e-12, Sum P(5) = 5.2e-12
Identities = 49/185 (26%), Positives = 87/185 (47%)
Query: 1920 NARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRS 1979
N R+ FIP+ N I + AD+ QIEL++ A + D ++ + + D+ T+ A+ T ++
Sbjct: 1781 NIREIFIPNDNN-IFIIADFKQIELKIAAEITNDEIMLKAYNN-NIDLHTLTASIITKKN 1838
Query: 1980 EDSVGSQERDQTKRLIYGILYGMGPNTLSEQ------LNCSSNEAKEKIKSFKSSFPGVA 2033
+ ++R K + +G++YGM L LN S ++ SF + G+
Sbjct: 1839 IPDINKEDRHIAKAINFGLIYGMNYVNLKNYANTYYGLNMSLDQCLYFYNSFFEHYKGIY 1898
Query: 2034 SWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIA 2093
W H V Y +L RK F +A+N QG+ ADI+K+A
Sbjct: 1899 KW-HNQVKQKRALQY-STLSNRKVIFPYFSF----------TKALNYPVQGTCADILKLA 1946
Query: 2094 MINIH 2098
+++++
Sbjct: 1947 LVDLY 1951
Score = 97 (39.2 bits), Expect = 5.2e-12, Sum P(5) = 5.2e-12
Identities = 43/147 (29%), Positives = 67/147 (45%)
Query: 1746 LADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKL 1805
+ DMEL GI VD+E ++ N + +L +EK +K VL K
Sbjct: 1637 ICDMELNGIKVDLENLQKSTNEILNELN-IEKDNLKKK-LKDENINVNSQQQVLKALQKN 1694
Query: 1806 PIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMST 1865
+ + NK ++ S D + + L HE I ++ +R L KL + + I+ T
Sbjct: 1695 NVRDISNKLIENTS-DSNLKNFLNHEEIIS--LRNYRRLYKLYSAFYLKLP--LHINTKT 1749
Query: 1866 QKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
K +H + Q T +GR S E+PNLQ
Sbjct: 1750 NK--IHTTFNQLKTFSGRFSSEKPNLQ 1774
Score = 89 (36.4 bits), Expect = 5.2e-12, Sum P(5) = 5.2e-12
Identities = 20/64 (31%), Positives = 39/64 (60%)
Query: 2115 NFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAA---LLLVPLLVKIQVGS 2171
N + + G+ ++L VHDE+++EV+ +EA+ ++ + ME++A L V V +++
Sbjct: 1953 NLKDINGK--IILCVHDEIIIEVNKKFQEEALKILVQSMENSASYFLKKVKCEVSVKIAE 2010
Query: 2172 TWGS 2175
WGS
Sbjct: 2011 NWGS 2014
Score = 38 (18.4 bits), Expect = 5.2e-12, Sum P(5) = 5.2e-12
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 811 HSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREV 860
HS F D+ I + P ++ V +T+PS Y + GL + E +
Sbjct: 665 HSQILNFNDLRQRILEELKYPDRINGVKSKTIPSLNKYLY-GLRMGELSI 713
Score = 37 (18.1 bits), Expect = 5.2e-12, Sum P(5) = 5.2e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1117 ISSKLRDSTKGLHG 1130
I+SKL D K ++G
Sbjct: 1550 IASKLLDKNKNMYG 1563
>SGD|S000003220 [details] [associations]
symbol:HFM1 "Meiosis specific DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
"meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
GermOnline:YGL251C Uniprot:P51979
Length = 1187
Score = 170 (64.9 bits), Expect = 5.3e-12, Sum P(4) = 5.3e-12
Identities = 40/107 (37%), Positives = 63/107 (58%)
Query: 828 RRCPAG-LDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLP 886
+RC D +L E + G+A+HHAG+++E+R VE + G + +L +TSTLA GVNLP
Sbjct: 402 KRCNHNPSDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVGVNLP 461
Query: 887 ARRVIFRQPRIG-----RDFIDGTRYRQMAGRAGRTGIDTKGESMLI 928
A VI + + +++ D QM GRAGR +T G ++++
Sbjct: 462 AYLVIIKGTKSWNSSEIQEYSD-LDVLQMIGRAGRPQFETHGCAVIM 507
Score = 84 (34.6 bits), Expect = 5.3e-12, Sum P(4) = 5.3e-12
Identities = 52/253 (20%), Positives = 103/253 (40%)
Query: 422 KSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVHERKLDISSQGID-SITSDSPTNVIKK 480
K+ ++ FK S + D E + + R L + + SIT+D T V K
Sbjct: 35 KNSRQPSFKVGLSYNSLLDDCDDENETEEIF--EGRGLQFFDKDDNFSITADD-TQVTSK 91
Query: 481 PVGNE----KSDEAGTPSSSGMLKD---CLDLSSWLPSEICSIYKKRGISKLYPWQVECL 533
++ +EA P + K CL ++ LP ++K +K+ +
Sbjct: 92 LFDHDLEQTPDEEAKKPKKVTIRKSAKKCLS-TTILPDSFRGVFKFTEFNKMQSEAFPSI 150
Query: 534 HVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK-----MALLVLPYVSICAEKAE 588
+ N + + T +GK+ + E+ +LR + T + + P S+C E +
Sbjct: 151 YESN----ENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYK 206
Query: 589 HLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSE-IGIIV 647
+ L + + + K ++ + T EK + L R + RL E + +++
Sbjct: 207 NWFPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVL 266
Query: 648 IDELHMVADQNRG 660
+DE+H + ++ RG
Sbjct: 267 VDEIHTIKEK-RG 278
Score = 68 (29.0 bits), Expect = 5.3e-12, Sum P(4) = 5.3e-12
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAAN 759
++ V +SAT+PN+ +A WL+ N P + + + + K V N
Sbjct: 295 IRFVALSATVPNIEDLALWLKT----NNELPANILSFDESYRQVQLTKF-VYGYSFNCKN 349
Query: 760 LGGKDPDHIVELCDEVVQ---EGHSVLIFCSSRKGCESTAR 797
KD + +L E+++ + VLIFC +R STA+
Sbjct: 350 DFQKDAIYNSKLI-EIIEKHADNRPVLIFCPTRASTISTAK 389
Score = 41 (19.5 bits), Expect = 5.3e-12, Sum P(4) = 5.3e-12
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 1528 LFEIHGL-AVCWENSPV 1543
LF + L CWEN+P+
Sbjct: 762 LFLLRSLNGHCWENTPM 778
Score = 37 (18.1 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 2078 VNSICQGSAADIIKIAMINIHSIIVGGVYK 2107
+N CQ ++K+ +I+I + G YK
Sbjct: 590 INQFCQYLLDTLVKVKIIDISN----GEYK 615
>GENEDB_PFALCIPARUM|PF14_0370 [details] [associations]
symbol:PF14_0370 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0004004 KO:K01509
RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 170 (64.9 bits), Expect = 7.5e-12, Sum P(6) = 7.5e-12
Identities = 49/155 (31%), Positives = 77/155 (49%)
Query: 838 LEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI 897
L+E L G+ HHAGL ++ +VE + ++++L TSTLA G+NLPA VI +
Sbjct: 1807 LKEILKYGIGIHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIK---- 1862
Query: 898 GRDFIDGT--RYR--------QMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPP 947
G +F D +Y+ QM GRAGR D K ++L+ + + I L
Sbjct: 1863 GNEFYDAKTKKYKDIPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNAIKNFLYHPMN- 1921
Query: 948 LHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYV 982
+ S + E+ N H E+ + ++ EDI Y+
Sbjct: 1922 IESNIMENFN--EHINAEICSN-VINNKEDIFNYL 1953
Score = 165 (63.1 bits), Expect = 0.00028, Sum P(7) = 0.00028
Identities = 71/295 (24%), Positives = 136/295 (46%)
Query: 701 QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEY--IKVGNAIYSKKMDVVRTILTAA 758
+I+ MSAT+PN V D+L+ E + E+Y I++ +Y + + A
Sbjct: 622 RIMAMSATLPNYKDVRDFLKV---ENDMCYYFNEKYRSIQLDKTLYGIHEENNNKLYIAK 678
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
N+ + E+ + + ++ ++ CS + ++ ++ LK I + ++ +
Sbjct: 679 NIYTYN-----EIINSLKKDKQCIIFVCSRNETNKTIEFLINHALKNNEIE-YFVNNVYT 732
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
D D ++ + +++ G HHAG++ ++ +VE+ ++K + VL TST
Sbjct: 733 DN----DIKKKIKKSNNLYIKQFYEYGCTIHHAGMSRSDKILVESLFKKKVFNVLCCTST 788
Query: 879 LAAGVNLPARRVIFR-----QPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
LA GVNLP VI + G+ + +D Q+ GR GR ++ G ++LI +
Sbjct: 789 LAWGVNLPVHTVIIKGTNYFSSESGKLEDMDILDINQIFGRCGRPQYESHGHAILITERT 848
Query: 933 EVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
++ K + LL + + L KN H E+ G I + ED +++ T L
Sbjct: 849 KLYKYIKLLTNNTVIESNFL---KNIENHLNAEISIGTI-KNIEDGIKWLEYTYL 899
Score = 123 (48.4 bits), Expect = 7.5e-12, Sum P(6) = 7.5e-12
Identities = 32/138 (23%), Positives = 70/138 (50%)
Query: 527 PWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-GKMALLVLPYVSICAE 585
P Q + H N++ A T +GK+ + E+ +LR L+ G+ ++ + P +I E
Sbjct: 1373 PIQTQMFHATFHTDE-NILLGAPTGSGKTVIGELCILRNLLRCEGQKSVYICPMKAIVNE 1431
Query: 586 KAEHLEVLLEPL-GRHVRSYYG--NQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSE 642
+ + + + L ++V G N+ ++ ++++ +CT EK + + + +
Sbjct: 1432 RYKSWKSKFKSLFNKNVIELTGDKNENKENIA-ESNIIICTPEKLDVITRNWKNKKFVKN 1490
Query: 643 IGIIVIDELHMVADQNRG 660
I +I+ DE+H++ +NRG
Sbjct: 1491 INLIIFDEIHLLGQENRG 1508
Score = 58 (25.5 bits), Expect = 2.3e-05, Sum P(7) = 2.3e-05
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 542 RNLVYCASTSAGKSFVAEILMLRRLI 567
+NL+ CA T GK+ +A +++L+++I
Sbjct: 356 KNLLVCAPTGCGKTNIALLVILQQII 381
Score = 49 (22.3 bits), Expect = 7.5e-12, Sum P(6) = 7.5e-12
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 410 DGVVSEKGSVTHKSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVH 455
DG V E + C++ +S+ E I+D+ KD+ +I H
Sbjct: 100 DGKVLENEENEESGLMYVYNTCYNILSSKNE-ITDINNKDNSIINH 144
Score = 45 (20.9 bits), Expect = 7.5e-12, Sum P(6) = 7.5e-12
Identities = 29/131 (22%), Positives = 62/131 (47%)
Query: 700 LQIVGMSATMPNVAAVADWLQAAL-YETNF----RPVPLEEYIKVGNAIYSKKMDVVRTI 754
++++G++ + +V + WL Y NF R VP + +I +G +++K R
Sbjct: 1529 IRLIGLTTVITSVDDLILWLDVKENYLFNFPSSCRIVPCKTHI-LG---FTQKAYCNR-- 1582
Query: 755 LTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814
++ N ++ + ++ Q +VLIF SSR+ TA + S+N+ S +
Sbjct: 1583 MSVMN------KNVFDAINQYAQT-KNVLIFVSSRRQTRLTAYDI------ISLNLSSHN 1629
Query: 815 SEFIDITSAID 825
F+ + + ++
Sbjct: 1630 LNFLHVENLLN 1640
Score = 42 (19.8 bits), Expect = 7.5e-12, Sum P(6) = 7.5e-12
Identities = 27/122 (22%), Positives = 48/122 (39%)
Query: 1511 FYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDK 1570
FY DIH + +E + NS YVN+P ++ H R Y
Sbjct: 2325 FYKDIHSENENEKEKEKENKNEEKNRNTTNS---YVNIP---YAQHFRNQHK--YSFKIN 2376
Query: 1571 NVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGT 1630
+ + E +++ R G+ ++V+ F + + ++SI+RF NL
Sbjct: 2377 SYYSKEIVIKLFFNFMNRTGKEASSQNVQWFA----ILHDTEQDESISIKRFNNNNLKKV 2432
Query: 1631 SL 1632
S+
Sbjct: 2433 SV 2434
Score = 41 (19.5 bits), Expect = 7.5e-12, Sum P(6) = 7.5e-12
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 1268 KALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLE 1302
K LF + S+ + + VQ K+ A+KI+ +
Sbjct: 1960 KRLFSNPSYYIKEVQYVQFFENSKLSTHAKKIIYD 1994
Score = 40 (19.1 bits), Expect = 0.00028, Sum P(6) = 0.00028
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 1762 LQARNLLQKKLRYLEKKAYTLAGMKFSLYT 1791
L+ +NL + + +L KK L M+ +YT
Sbjct: 1187 LEKKNLTYESIEHLSKKEL-LFFMRNEIYT 1215
Score = 39 (18.8 bits), Expect = 2.3e-05, Sum P(7) = 2.3e-05
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 636 EEGRLSEIGIIVIDELHMVADQNRG 660
+E + I +++DE+H++ + +RG
Sbjct: 577 DESLIKYIKCLILDEVHLL-NTDRG 600
Score = 38 (18.4 bits), Expect = 0.00028, Sum P(7) = 0.00028
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 997 VKSAQDSLRWLCHRK-FLEWNEDTKLY 1022
+K+ +D ++WL + F+ ++ LY
Sbjct: 884 IKNIEDGIKWLEYTYLFIRMKKNPYLY 910
Score = 37 (18.1 bits), Expect = 1.0e-10, Sum P(6) = 1.0e-10
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 179 EDNKIAKKKYCVSNLLQSG--------EQTTCSNAKNIEETQSGFIVKTGNLVPNSSQRV 230
E NKI +K S L+++G ++ N + +E +S + N V N++
Sbjct: 385 EQNKIKLEKIVKSYLIKNGLLSCDEDIKKRNDDNERTRDELKSYGYNEPNNYVDNNNNNN 444
Query: 231 TDSN 234
+D++
Sbjct: 445 SDND 448
>UNIPROTKB|Q8IL78 [details] [associations]
symbol:PF14_0370 "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0004004
KO:K01509 RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 170 (64.9 bits), Expect = 7.5e-12, Sum P(6) = 7.5e-12
Identities = 49/155 (31%), Positives = 77/155 (49%)
Query: 838 LEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI 897
L+E L G+ HHAGL ++ +VE + ++++L TSTLA G+NLPA VI +
Sbjct: 1807 LKEILKYGIGIHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIK---- 1862
Query: 898 GRDFIDGT--RYR--------QMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPP 947
G +F D +Y+ QM GRAGR D K ++L+ + + I L
Sbjct: 1863 GNEFYDAKTKKYKDIPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNAIKNFLYHPMN- 1921
Query: 948 LHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYV 982
+ S + E+ N H E+ + ++ EDI Y+
Sbjct: 1922 IESNIMENFN--EHINAEICSN-VINNKEDIFNYL 1953
Score = 165 (63.1 bits), Expect = 0.00028, Sum P(7) = 0.00028
Identities = 71/295 (24%), Positives = 136/295 (46%)
Query: 701 QIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEY--IKVGNAIYSKKMDVVRTILTAA 758
+I+ MSAT+PN V D+L+ E + E+Y I++ +Y + + A
Sbjct: 622 RIMAMSATLPNYKDVRDFLKV---ENDMCYYFNEKYRSIQLDKTLYGIHEENNNKLYIAK 678
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
N+ + E+ + + ++ ++ CS + ++ ++ LK I + ++ +
Sbjct: 679 NIYTYN-----EIINSLKKDKQCIIFVCSRNETNKTIEFLINHALKNNEIE-YFVNNVYT 732
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
D D ++ + +++ G HHAG++ ++ +VE+ ++K + VL TST
Sbjct: 733 DN----DIKKKIKKSNNLYIKQFYEYGCTIHHAGMSRSDKILVESLFKKKVFNVLCCTST 788
Query: 879 LAAGVNLPARRVIFR-----QPRIGR-DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
LA GVNLP VI + G+ + +D Q+ GR GR ++ G ++LI +
Sbjct: 789 LAWGVNLPVHTVIIKGTNYFSSESGKLEDMDILDINQIFGRCGRPQYESHGHAILITERT 848
Query: 933 EVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
++ K + LL + + L KN H E+ G I + ED +++ T L
Sbjct: 849 KLYKYIKLLTNNTVIESNFL---KNIENHLNAEISIGTI-KNIEDGIKWLEYTYL 899
Score = 123 (48.4 bits), Expect = 7.5e-12, Sum P(6) = 7.5e-12
Identities = 32/138 (23%), Positives = 70/138 (50%)
Query: 527 PWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-GKMALLVLPYVSICAE 585
P Q + H N++ A T +GK+ + E+ +LR L+ G+ ++ + P +I E
Sbjct: 1373 PIQTQMFHATFHTDE-NILLGAPTGSGKTVIGELCILRNLLRCEGQKSVYICPMKAIVNE 1431
Query: 586 KAEHLEVLLEPL-GRHVRSYYG--NQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSE 642
+ + + + L ++V G N+ ++ ++++ +CT EK + + + +
Sbjct: 1432 RYKSWKSKFKSLFNKNVIELTGDKNENKENIA-ESNIIICTPEKLDVITRNWKNKKFVKN 1490
Query: 643 IGIIVIDELHMVADQNRG 660
I +I+ DE+H++ +NRG
Sbjct: 1491 INLIIFDEIHLLGQENRG 1508
Score = 58 (25.5 bits), Expect = 2.3e-05, Sum P(7) = 2.3e-05
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 542 RNLVYCASTSAGKSFVAEILMLRRLI 567
+NL+ CA T GK+ +A +++L+++I
Sbjct: 356 KNLLVCAPTGCGKTNIALLVILQQII 381
Score = 49 (22.3 bits), Expect = 7.5e-12, Sum P(6) = 7.5e-12
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 410 DGVVSEKGSVTHKSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVH 455
DG V E + C++ +S+ E I+D+ KD+ +I H
Sbjct: 100 DGKVLENEENEESGLMYVYNTCYNILSSKNE-ITDINNKDNSIINH 144
Score = 45 (20.9 bits), Expect = 7.5e-12, Sum P(6) = 7.5e-12
Identities = 29/131 (22%), Positives = 62/131 (47%)
Query: 700 LQIVGMSATMPNVAAVADWLQAAL-YETNF----RPVPLEEYIKVGNAIYSKKMDVVRTI 754
++++G++ + +V + WL Y NF R VP + +I +G +++K R
Sbjct: 1529 IRLIGLTTVITSVDDLILWLDVKENYLFNFPSSCRIVPCKTHI-LG---FTQKAYCNR-- 1582
Query: 755 LTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814
++ N ++ + ++ Q +VLIF SSR+ TA + S+N+ S +
Sbjct: 1583 MSVMN------KNVFDAINQYAQT-KNVLIFVSSRRQTRLTAYDI------ISLNLSSHN 1629
Query: 815 SEFIDITSAID 825
F+ + + ++
Sbjct: 1630 LNFLHVENLLN 1640
Score = 42 (19.8 bits), Expect = 7.5e-12, Sum P(6) = 7.5e-12
Identities = 27/122 (22%), Positives = 48/122 (39%)
Query: 1511 FYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDK 1570
FY DIH + +E + NS YVN+P ++ H R Y
Sbjct: 2325 FYKDIHSENENEKEKEKENKNEEKNRNTTNS---YVNIP---YAQHFRNQHK--YSFKIN 2376
Query: 1571 NVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGT 1630
+ + E +++ R G+ ++V+ F + + ++SI+RF NL
Sbjct: 2377 SYYSKEIVIKLFFNFMNRTGKEASSQNVQWFA----ILHDTEQDESISIKRFNNNNLKKV 2432
Query: 1631 SL 1632
S+
Sbjct: 2433 SV 2434
Score = 41 (19.5 bits), Expect = 7.5e-12, Sum P(6) = 7.5e-12
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 1268 KALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLE 1302
K LF + S+ + + VQ K+ A+KI+ +
Sbjct: 1960 KRLFSNPSYYIKEVQYVQFFENSKLSTHAKKIIYD 1994
Score = 40 (19.1 bits), Expect = 0.00028, Sum P(6) = 0.00028
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 1762 LQARNLLQKKLRYLEKKAYTLAGMKFSLYT 1791
L+ +NL + + +L KK L M+ +YT
Sbjct: 1187 LEKKNLTYESIEHLSKKEL-LFFMRNEIYT 1215
Score = 39 (18.8 bits), Expect = 2.3e-05, Sum P(7) = 2.3e-05
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 636 EEGRLSEIGIIVIDELHMVADQNRG 660
+E + I +++DE+H++ + +RG
Sbjct: 577 DESLIKYIKCLILDEVHLL-NTDRG 600
Score = 38 (18.4 bits), Expect = 0.00028, Sum P(7) = 0.00028
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 997 VKSAQDSLRWLCHRK-FLEWNEDTKLY 1022
+K+ +D ++WL + F+ ++ LY
Sbjct: 884 IKNIEDGIKWLEYTYLFIRMKKNPYLY 910
Score = 37 (18.1 bits), Expect = 1.0e-10, Sum P(6) = 1.0e-10
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 179 EDNKIAKKKYCVSNLLQSG--------EQTTCSNAKNIEETQSGFIVKTGNLVPNSSQRV 230
E NKI +K S L+++G ++ N + +E +S + N V N++
Sbjct: 385 EQNKIKLEKIVKSYLIKNGLLSCDEDIKKRNDDNERTRDELKSYGYNEPNNYVDNNNNNN 444
Query: 231 TDSN 234
+D++
Sbjct: 445 SDND 448
>SGD|S000003503 [details] [associations]
symbol:SLH1 "Putative RNA helicase related to Ski2p"
species:4932 "Saccharomyces cerevisiae" [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA;IGI;IMP] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042788 "polysomal ribosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0002181
"cytoplasmic translation" evidence=IGI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 SGD:S000003503 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 EMBL:BK006941 GO:GO:0003676 GO:GO:0051607
GO:GO:0002181 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003724 KO:K02201
RefSeq:NP_011793.3 GeneID:853194 KEGG:sce:YGR277C OMA:RKPTGEG
OrthoDB:EOG4H75KM RefSeq:NP_011787.4 GeneID:853187 KEGG:sce:YGR271W
EMBL:U35242 EMBL:Z73056 PIR:S64604 DIP:DIP-5563N IntAct:P53327
MINT:MINT-516762 STRING:P53327 PaxDb:P53327 PeptideAtlas:P53327
EnsemblFungi:YGR271W CYGD:YGR271w NextBio:973332
Genevestigator:P53327 GermOnline:YGR271W Uniprot:P53327
Length = 1967
Score = 239 (89.2 bits), Expect = 8.5e-12, Sum P(4) = 8.5e-12
Identities = 107/434 (24%), Positives = 186/434 (42%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL----ISTGK----------MALLVLPYVSICAEKAE 588
N++ CA T AGK+ +A + ++ + + G+ + V P ++ AE +
Sbjct: 305 NMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEIVD 364
Query: 589 HLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRL-SEIGII 646
L P VR G+ Q + T V V T EK + + + + L S++ ++
Sbjct: 365 KFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLVSKVKLL 424
Query: 647 VIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMS 706
+IDE+H++ + R ++I+G+S
Sbjct: 425 IIDEVHLLHEDRGSVIETLVARTLRQVESSQSM--------------------IRIIGLS 464
Query: 707 ATMPNVAAVADWL----QAALY--ETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANL 760
AT+PN VAD+L Q ++ + +FRP PLE+ + +G K +
Sbjct: 465 ATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQL-LG--CRGK---------AGSRQ 512
Query: 761 GGKDPDHIV-ELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID 819
++ D + + E++Q G+ V++F SRK +AR+ F+K N H D D
Sbjct: 513 SKENIDKVAYDKLSEMIQRGYQVMVFVHSRKETVKSARN---FIKLAESN-HEVDLFAPD 568
Query: 820 ITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTL 879
R D ++E G HHAG+ +R + E ++ G ++VL T+TL
Sbjct: 569 PIEKDKYSRSLVKNRDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATL 628
Query: 880 AAGVNLPARRVIFRQPRIGRD----FID-G-TRYRQMAGRAGRTGIDTKGESMLICKPEE 933
A GVNLPA VI + ++ FID G + Q+ GR GR G + + ++C +
Sbjct: 629 AWGVNLPADCVIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSND 688
Query: 934 -VKKIMGLLNESCP 946
+ + L+ + P
Sbjct: 689 RLDHYVSLITQQHP 702
Score = 201 (75.8 bits), Expect = 3.9e-11, Sum P(6) = 3.9e-11
Identities = 83/293 (28%), Positives = 124/293 (42%)
Query: 700 LQIVGMSATMPNVAAVADWLQA---ALYE--TNFRPVPLEEYIK--VGNAIYSKKMDVVR 752
++++GMS + N +A WL LY ++ RPVPL+ YI N + M +
Sbjct: 1297 VRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSVRPVPLKMYIDGFPDNLAFCPLMKTMN 1356
Query: 753 TILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812
+ A + PD LIF +SR+ TA + +
Sbjct: 1357 KPVFMA-IKQHSPDK-------------PALIFVASRRQTRLTALDLIHLC-----GMED 1397
Query: 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872
+ F++I + D L+ +L G+ HHAGL ++R + ++K +++
Sbjct: 1398 NPRRFLNIDDEEELQYYLSQVTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQI 1457
Query: 873 LTATSTLAAGVNLPARRVI-----FRQPRI-GRDFIDGTRYRQMAGRAGRTGIDTKGESM 926
L ATSTLA GVNLPA VI F +I G +D T QM GRAGR DT G ++
Sbjct: 1458 LIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAI 1517
Query: 927 LICKPEEVKKIMGLLNESCP---PLHSCLSEDKNGMTHAILEVVAGGIVQTAE 976
+ K + LN P LH L + H E+ +G I E
Sbjct: 1518 VYTKESKKMFYKHFLNVGFPVESSLHKVLDD------HLGAEITSGSITNKQE 1564
Score = 87 (35.7 bits), Expect = 3.9e-11, Sum P(6) = 3.9e-11
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 550 TSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPL-GRHVRSYYGN 607
T +GK+ VAE+ + + GK + + P ++ E+ + + P+ G V G+
Sbjct: 1164 TGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKALVRERVDDWRKKITPVTGDKVVELTGD 1223
Query: 608 QGGGSLPK-----DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
SLP D ++ + T EK + + + ++ +I++DE+H++A +RG
Sbjct: 1224 ----SLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLAS-DRG 1276
Score = 47 (21.6 bits), Expect = 8.5e-12, Sum P(4) = 8.5e-12
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1381 LESAGEKLLETSDNELSALVEGGSITELQQKFD 1413
+ES+ K+L D+ L A + GSIT Q+ D
Sbjct: 1538 VESSLHKVL---DDHLGAEITSGSITNKQEALD 1567
Score = 45 (20.9 bits), Expect = 8.5e-12, Sum P(4) = 8.5e-12
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 62 TSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQ 92
TS+ L R ++ + E+ K KDE+NQ
Sbjct: 23 TSQTFNLDRSKISLPDFDDELKKVQKDEQNQ 53
Score = 39 (18.8 bits), Expect = 5.3e-11, Sum P(4) = 5.3e-11
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 1358 FPVPMEHSDKPSLEANQISKKVDLESAGEKLLETSDNELSALV 1400
F P+ D P N I + D + + E LLE +EL LV
Sbjct: 940 FDHPLCQFDLPE---NIIRRIRDTKPSMEHLLELEADELGELV 979
Score = 38 (18.4 bits), Expect = 8.5e-12, Sum P(4) = 8.5e-12
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 1932 WILLAADYSQIELR 1945
W+ LA +Y+++ +R
Sbjct: 1662 WLSLAVEYNELPVR 1675
Score = 37 (18.1 bits), Expect = 3.9e-11, Sum P(6) = 3.9e-11
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 95 LSDQAQPQATQKVIS 109
LSD PQ KV+S
Sbjct: 1072 LSDPLPPQVVVKVVS 1086
>UNIPROTKB|F1RIW4 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0003727 GO:GO:0051607
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 OMA:QDCTYAD GO:GO:1900245 GO:GO:1900246
GeneTree:ENSGT00690000102154 EMBL:AEMK01191618 EMBL:CU469408
Ensembl:ENSSSCT00000010657 Uniprot:F1RIW4
Length = 1705
Score = 224 (83.9 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 51/139 (36%), Positives = 79/139 (56%)
Query: 813 SDSEFID---ITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL 869
+D + +D + + D ++ G + L+ GV YHH+ L +E+++VE +RKG
Sbjct: 1220 ADQKALDAQTLQTVFDRVKLTRKGAE--LKALAARGVGYHHSSLNFKEKQLVEILFRKGF 1277
Query: 870 VRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLIC 929
+RV+TAT TLA G+N+P + V+F Q I ++D YRQM+GRAGR G D G+
Sbjct: 1278 IRVVTATGTLALGINMPCKSVVFAQNSI---YLDALNYRQMSGRAGRRGQDLLGDVYFFD 1334
Query: 930 KPEEVKKIMGLLNESCPPL 948
P + KI L+ + P L
Sbjct: 1335 IP--LPKIEKLIKSNVPQL 1351
Score = 46 (21.3 bits), Expect = 4.7e-10, Sum P(4) = 4.7e-10
Identities = 17/76 (22%), Positives = 37/76 (48%)
Query: 42 SPSAKGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLEI--DKYSKDEKNQALLSDQA 99
S S+K + +K + G TSK++ ++ E++ R + + K+EK ++LS
Sbjct: 542 SVSSKFVVTQGIKPRKFYGPTSKKTQETKAEIITRENKKRLLAKEEEKEEKKWSVLSFSI 601
Query: 100 QPQATQKVISRCSSKE 115
+ + + + S + E
Sbjct: 602 EEEMKEDLNSGIKNLE 617
Score = 41 (19.5 bits), Expect = 4.7e-10, Sum P(4) = 4.7e-10
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 703 VGMSATMPNVAAVADWLQA 721
+ +SAT+ N + +WLQ+
Sbjct: 909 LALSATISNPEHLTEWLQS 927
Score = 40 (19.1 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDA 826
+G S+LI C K + +L+++ +++ + +F + S DA
Sbjct: 42 DGDSLLIMCVCEKSLKQGQDLHFFYLERYLVDLITKGGQFA-VVSLSDA 89
Score = 38 (18.4 bits), Expect = 4.7e-10, Sum P(4) = 4.7e-10
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 611 GSLPKDTSVAVCTIEKANSLVNRMLE 636
G KD S+AV +++ S+V + E
Sbjct: 654 GETTKDLSIAVQMMKRIYSVVEKYPE 679
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 181 (68.8 bits), Expect = 1.2e-11, Sum P(5) = 1.2e-11
Identities = 54/170 (31%), Positives = 88/170 (51%)
Query: 764 DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSA 823
D + IV++C + ++IF S+K CE A + K I++ +SD+E I
Sbjct: 494 DIEKIVQMCHS--RNYTPLIIFAFSKKECEVNATAMHK------IDL-TSDTEKEVIKEL 544
Query: 824 IDALRRCPAGLD---PVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS 877
+ R A D P ++ LP G+ HH GL +E++E +++ L++VL +T
Sbjct: 545 YENAIRILADDDRSLPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQESLLKVLFSTE 604
Query: 878 TLAAGVNLPARRVIFRQ----PRIGRDFIDGTRYRQMAGRAGRTGIDTKG 923
T + G+N+PA+ V+F + + I Y QMAGRAGR G+D +G
Sbjct: 605 TFSMGINMPAKTVVFTSLTKFDGLEKRLITSGEYIQMAGRAGRRGLDDRG 654
Score = 79 (32.9 bits), Expect = 1.2e-11, Sum P(5) = 1.2e-11
Identities = 31/131 (23%), Positives = 58/131 (44%)
Query: 530 VECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEH 589
+ECL + +++ A TSAGK+ +AE + L ++ + P ++ +K
Sbjct: 263 IECLE-----RNESVLVSAHTSAGKTVIAEYAIALGLRDKQRV-IYTSPIKALSNQK--- 313
Query: 590 LEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVID 649
LG + G S+ + S+ V T E S++ R E+ ++ D
Sbjct: 314 ----YRDLGEEFKDVGLITGDISINPEASIIVMTTEILRSMLYR--GSSLTKEVKWVIFD 367
Query: 650 ELHMVADQNRG 660
E+H + D++RG
Sbjct: 368 EIHYMRDRDRG 378
Score = 70 (29.7 bits), Expect = 1.2e-11, Sum P(5) = 1.2e-11
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 700 LQIVGMSATMPNVAAVADWL-----QAA-LYETNFRPVPLEEYI 737
++ + +SAT+PN A+W+ QA + T++RP PL+ YI
Sbjct: 392 VRFIFLSATIPNGIQFAEWVSSIKSQACHIVYTDYRPTPLQHYI 435
Score = 40 (19.1 bits), Expect = 3.1e-11, Sum P(6) = 3.1e-11
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 2049 VESLKGRKRFLSKIKFGNNKEKSK 2072
V++LK + ++K K NNK +K
Sbjct: 1057 VKNLKFHENIINKNKLLNNKNLNK 1080
Score = 39 (18.8 bits), Expect = 1.2e-11, Sum P(5) = 1.2e-11
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 1081 YYERFLELSALDQSVGNQVGVSEPYLM 1107
Y FL D+S ++ +++P L+
Sbjct: 1211 YICAFLSCFVYDESTSKEITINDPILV 1237
Score = 38 (18.4 bits), Expect = 1.2e-11, Sum P(5) = 1.2e-11
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 75 KRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSEVGCHMKDGSA-HIPE 133
K+N ++ D N + D+ + + T+K I++ ++ N + KD H E
Sbjct: 32 KKNHIIQNDNEIITSTNNSKNEDEEEKEETEKNINKQNNNINNIDKDDVNKDNVGNHKKE 91
Query: 134 SL 135
+L
Sbjct: 92 NL 93
Score = 38 (18.4 bits), Expect = 3.1e-11, Sum P(6) = 3.1e-11
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 1439 KIPDTTLSVQLGKNAIGTITSNRDL----DLEVQDRPNRDPCLVNKDR 1482
+I L ++ N I +N++L +L+++D + D ++N D+
Sbjct: 751 EITKDELLTKIMYNNYEQIKNNQNLGTSSELKIKDTSSNDEVILNADK 798
>FB|FBgn0038344 [details] [associations]
symbol:CG5205 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
Length = 2183
Score = 250 (93.1 bits), Expect = 2.5e-11, Sum P(4) = 2.5e-11
Identities = 82/275 (29%), Positives = 133/275 (48%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
++IVG+SAT+PN VA +L+ +++ FRPVPL+ VG +++
Sbjct: 652 IRIVGLSATLPNYIDVAHFLRVNPMKGLFYFDSRFRPVPLDTNF-VG----------IKS 700
Query: 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813
+ + D + C E+VQEGH +++F +R TA + + ++ +++
Sbjct: 701 VKQLQQIADMD-QCCYQKCVEMVQEGHQIMVFVHARNATVRTANVIRELAQQ-----NNT 754
Query: 814 DSEFIDITSAIDAL--RRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
+ F+ SA L R + L E G+A HHAG+ +R++VE + +G +
Sbjct: 755 SALFLPKDSAAHGLATRSIQRSRNKQLVELFSCGLAMHHAGMLRADRQMVEKYFVEGHIS 814
Query: 872 VLTATSTLAAGVNLPARRVIFRQPRI----GRDFID-GTR-YRQMAGRAGRTGIDTKGES 925
VL T+TLA GVNLPA VI R I F+D G Q+ GRAGR D G
Sbjct: 815 VLVCTATLAWGVNLPAHAVIIRGTDIYDAKHGSFVDLGILDVLQIFGRAGRPQFDKSGVG 874
Query: 926 MLICKPEEVKKIMGLLNESCP---PLHSCLSEDKN 957
+I +++ + LL P +CL+++ N
Sbjct: 875 TIITSYDKLNHYLSLLTNQFPIESNFVNCLADNLN 909
Score = 169 (64.5 bits), Expect = 5.8e-09, Sum P(4) = 5.8e-09
Identities = 78/298 (26%), Positives = 127/298 (42%)
Query: 700 LQIVGMSATMPNVAAVADWLQA-ALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IVG+S + N +A+WL + NF+P ++V + K R +
Sbjct: 1495 IRIVGLSTALANAQDLANWLGINKMGLYNFKPSVRPVPLQVHINGFPGKHYCPR--MATM 1552
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
N C+ + +F SSR+ TA + F+ S+ +F+
Sbjct: 1553 NRPTFQAIRTYSPCEPTI-------VFVSSRRQTRLTALDLITFVAG-----ESNPKQFL 1600
Query: 819 DITSAIDALRRCPAGL-DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS 877
I D + + + L+ L G+ HHAGL ++R+ VE + +++L AT+
Sbjct: 1601 HIPE--DEIELILQNIREQNLKFCLAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATA 1658
Query: 878 TLAAGVNLPARRVIFRQPRIGRDFIDG----------TRYRQMAGRAGRTGIDTKGESML 927
TLA GVNLPA V+ + G ++ DG T QM GRAGR D +G +++
Sbjct: 1659 TLAWGVNLPAHLVVIK----GTEYFDGKVKKYVDMPITDVLQMMGRAGRPQFDNEGVAVV 1714
Query: 928 ICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCT 985
+ E+ L + P S L H E+VAG VQ+ + Y+ T
Sbjct: 1715 LVHDEKKNFYKKFLYDPFPVESSLLGVLPE---HINAEIVAG-TVQSKQAALDYLTWT 1768
Score = 96 (38.9 bits), Expect = 5.8e-09, Sum P(4) = 5.8e-09
Identities = 38/151 (25%), Positives = 68/151 (45%)
Query: 515 SIYKKRGISKLYPWQVECL-HVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMA 573
S+YK + + CL H D N++ A T +GK+ VAEI + R L K
Sbjct: 1330 SLYKFTHFNPIQTQIFHCLYHTDN-----NVLLGAPTGSGKTIVAEIAIFRALNQNPKCK 1384
Query: 574 LL-VLPYVSICAEKAEHLEVLLE--PLGRHVRSYYGNQGGG-SLPKDTSVAVCTIEKANS 629
++ + P ++ E+ E + LG V G+ +++ + V T EK +
Sbjct: 1385 VVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTPEKWDG 1444
Query: 630 LVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
+ + + +IVIDE+H++ + +RG
Sbjct: 1445 ISRSWQTREYVQHVSLIVIDEIHLLGE-DRG 1474
Score = 41 (19.5 bits), Expect = 2.5e-11, Sum P(4) = 2.5e-11
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 182 KIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGFIVKTGNLVPNSSQRV 230
K AK +Y S+ Q +++ + + +GFI + +P+++QR+
Sbjct: 395 KAAKAEYKQSSYNQPIHYPYVFDSQLLAKQHAGFIGGSRITLPDNAQRI 443
Score = 38 (18.4 bits), Expect = 2.5e-11, Sum P(4) = 2.5e-11
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 1848 LNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRL 1884
L T ++ + R+ + YT WL T+ +L
Sbjct: 1919 LTDTKSALDNATRVMQAMVDYTAERGWLSTTLVVQQL 1955
Score = 37 (18.1 bits), Expect = 2.5e-11, Sum P(4) = 2.5e-11
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 1778 KAYTLAGMKFSLYTAADIANVL 1799
+A + G+ +L A D+AN L
Sbjct: 1493 RAIRIVGLSTALANAQDLANWL 1514
>RGD|1584010 [details] [associations]
symbol:Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1584010 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 IPI:IPI00766186
Ensembl:ENSRNOT00000033794 UCSC:RGD:1584010 Uniprot:F1LWY1
Length = 954
Score = 216 (81.1 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 87/287 (30%), Positives = 136/287 (47%)
Query: 694 ADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMD-VVR 752
A PA ++ V +SAT+PN +A+WL E RP +K+ + K+ VV
Sbjct: 176 ASPAP-VRFVAVSATIPNAEDIAEWLSDG--E---RPAVC---LKMDESHRPVKLQKVVL 226
Query: 753 TILTAANLGGKDPD----HIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSI 808
+++N D + V + L+FC++RKG + A + K K F I
Sbjct: 227 GFPSSSNQTEFKFDLALNYKVYSVIRTYSDQKPTLVFCATRKGVQQAASVLVKDAK-FII 285
Query: 809 NVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKG 868
V + + + ++R D L++TL GV YHHAG+ + +R++VE + G
Sbjct: 286 TVEQK----LRLQKSAYSIR------DSKLKDTLVYGVGYHHAGMELSDRKLVEELFTSG 335
Query: 869 LVRVLTATSTLAAGVNLPARRVIFRQPR--IGRDFID--GTRYRQMAGRAGRTGIDTKGE 924
+ VL TSTLA GVNLPA V+ + G F + T QM GRAGR DT
Sbjct: 336 DLPVLFTTSTLAMGVNLPAHLVVIKSTMHYTGGAFEEYSETDILQMIGRAGRPQFDTTAT 395
Query: 925 SMLICKPEEVKKIMGLL--NESCPP-LHSCLSEDKNG--MTHAILEV 966
++++ + +K + +L N++ LH L E N + H I +V
Sbjct: 396 AVIMTRLSTREKYVQMLACNDTVESSLHRHLIEHLNAEIVLHTITDV 442
Score = 157 (60.3 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 73/310 (23%), Positives = 137/310 (44%)
Query: 518 KKRGISKLYPW--QVECLHVDGVLQR-RNLVYCASTSAGKSFVAEILMLRRLISTG---- 570
K R + K +P+ ++ D +L RN V CA T +GK+ V E+ + R L+
Sbjct: 1 KFRSVFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEAPLPWL 60
Query: 571 KMALLVL-PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSL--PKDTSVAVCTIEKA 627
M ++ + P ++C+++ + + P+G + G+ L + ++ + T EK
Sbjct: 61 NMKVVYMAPIKALCSQRFDDWKEKFGPIGLTCKELTGDTVMDDLFEIQHANIIMTTPEKW 120
Query: 628 NSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXX 687
+S+ + + + + + +IDE+H++ D+NRG +
Sbjct: 121 DSMTRKWRDNSFIQLVRLFLIDEVHVIKDENRGPTLEVVVSRMK-----------TVQSL 169
Query: 688 XXXXXKADPAHGLQIVGMSATMPNVAAVADWL----QAAL---YETNFRPVPLEEYIKVG 740
A PA ++ V +SAT+PN +A+WL + A+ + + RPV L++ + +G
Sbjct: 170 SKTLENASPAP-VRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVV-LG 227
Query: 741 NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVS 800
S + + + A N K I D+ L+FC++RKG + A +
Sbjct: 228 FPSSSNQTEFKFDL--ALNY--KVYSVIRTYSDQ-----KPTLVFCATRKGVQQAASVLV 278
Query: 801 KFLKKFSINV 810
K K F I V
Sbjct: 279 KDAK-FIITV 287
Score = 38 (18.4 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 782 VLIFCSSRKGCESTARHVSKFLKKFSINVHSS 813
+L C K E++ +HVSK L K I++ ++
Sbjct: 644 ILAKCFKCKLWENS-QHVSKQLDKIGISLSNT 674
Score = 37 (18.1 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 1593 MEKRD-VRKFTWNMKVQIQVLKHAAVSIQRFG 1623
++ RD V F +++IQ+ K V ++ FG
Sbjct: 914 LKSRDAVSSFPPAKRLKIQMNKSQNVDLKEFG 945
>UNIPROTKB|F1S4E9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:CU179709
Ensembl:ENSSSCT00000007570 Uniprot:F1S4E9
Length = 1438
Score = 216 (81.1 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 87/301 (28%), Positives = 138/301 (45%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEY---IKVGNAIYSKKMDVVRTILT 756
++ V +SAT+PN +A+WL E + + ++E +K+ + +T
Sbjct: 453 MRFVAVSATIPNAEDIAEWLSDG--ERSAICLKMDEKHRPVKLRKVVLGFPCSNNQTEFK 510
Query: 757 A-ANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815
L K + D+ L+FC++RKG + A SI V D+
Sbjct: 511 FDLTLNYKIASVVQTYSDQ-----KPTLVFCATRKGVQQAA----------SILV--KDA 553
Query: 816 EFIDITSAIDALRRCPAGL-DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874
+FI L +C + D L + L GVAYHHAG+ + +R+VVE + G + VL
Sbjct: 554 KFIMTVEQKQRLHKCAYSIRDSKLRDLLIHGVAYHHAGMELSDRKVVEGAFTVGDLPVLF 613
Query: 875 ATSTLAAGVNLPARRVIFRQPR--IGRDFID--GTRYRQMAGRAGRTGIDTKGESMLICK 930
TSTLA GVNLPA V+ + G F + T QM GRAGR DT ++++ +
Sbjct: 614 TTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFDTTATAVIMTR 673
Query: 931 PEEVKKIMGLLNESCPP-LHSCLSEDKNGMTHAILEVVAGGIVQTAEDIH---RYVRCTL 986
+K + +L +C + S L H I + A ++ T D++ ++R TL
Sbjct: 674 LSTKEKYIQML--ACSDTVESSLHR------HLIEHLNAEIVLHTITDVNIALEWIRSTL 725
Query: 987 L 987
L
Sbjct: 726 L 726
Score = 146 (56.5 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 72/325 (22%), Positives = 145/325 (44%)
Query: 497 GMLKDCLDLSSWLPSEICSIYKKRGISKLYPW--QVECLHVDGVLQR-RNLVYCASTSAG 553
G++++ LD S +EI + K R + K +P+ ++ D +L RN+V CA T +G
Sbjct: 254 GIIENGLD-SLKAVTEIPA--KFRSVFKEFPYFNYIQSKAFDDLLYTDRNVVVCAPTGSG 310
Query: 554 KSFVAEILMLRRLIST----GKMALLVL-PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQ 608
K+ + E+ + R L+ + ++ + P ++C+++ + + P+G + + G+
Sbjct: 311 KTVMFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDT 370
Query: 609 GGGSL--PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXX 666
L + + + T EK +S+ + + + + + +IDE+H+V D+NRG
Sbjct: 371 VMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVV 430
Query: 667 XXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWL----QAA 722
+ P ++ V +SAT+PN +A+WL ++A
Sbjct: 431 VSRMKTVQFLSHAVENPRNII--------P---MRFVAVSATIPNAEDIAEWLSDGERSA 479
Query: 723 L---YETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEG 779
+ + RPV L + + +G + + + + LT L K + D+
Sbjct: 480 ICLKMDEKHRPVKLRKVV-LGFPCSNNQTEF-KFDLT---LNYKIASVVQTYSDQ----- 529
Query: 780 HSVLIFCSSRKGCESTARHVSKFLK 804
L+FC++RKG + A + K K
Sbjct: 530 KPTLVFCATRKGVQQAASILVKDAK 554
Score = 41 (19.5 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 2048 YVESLKGRKRFLSKIKFGNNKE--KSKAQRQAVNSICQGSAADIIKI 2092
Y+ +LK + G NK+ +SK Q + ++ S+ D+IK+
Sbjct: 727 YIRALKNPSHY--GFASGLNKDGIESKLQELCLKNLNDLSSLDLIKM 771
>UNIPROTKB|G4MUH1 [details] [associations]
symbol:MGG_07250 "DEAD/DEAH box helicase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001232
GO:GO:0008026 RefSeq:XP_003715470.1 EnsemblFungi:MGG_07250T0
GeneID:2682996 KEGG:mgr:MGG_07250 Uniprot:G4MUH1
Length = 1771
Score = 206 (77.6 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 49/121 (40%), Positives = 67/121 (55%)
Query: 803 LKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVE 862
L KFS + S + D+ I +L LDPV E L GV HHAG+ + R+VVE
Sbjct: 1177 LAKFSFS-DSRKCQREDLEELIRSLNW--VNLDPVFIEALRRGVGVHHAGMNRKYRQVVE 1233
Query: 863 TCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTK 922
R+G + V+ AT TLA G+N+P + V+F + + F+ YRQ +GRAGR G D
Sbjct: 1234 MLCRRGFLTVVIATGTLALGINVPCKTVVFSEDSV---FLSALNYRQASGRAGRRGFDLL 1290
Query: 923 G 923
G
Sbjct: 1291 G 1291
Score = 66 (28.3 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 38/160 (23%), Positives = 68/160 (42%)
Query: 522 ISKLYP--WQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALL-VLP 578
+S P WQ + L D + +++L A TSAGK+F++ M + + S+ L+ V P
Sbjct: 710 VSSFNPDAWQRKVL--DAIDAKKSLCVIAPTSAGKTFISFYAMKKVMQSSDNDVLVYVAP 767
Query: 579 YVSICAEKAEHLEVLLEPLGR----------HVRSYYGNQGGG-----SLPKDTSVAVCT 623
++ + A ++ + R H R Y N G ++P + + +
Sbjct: 768 TKALVNQIAAEVQGRFKKKFRYEESRSVWAIHTRDYRVNNPTGCQILVTVPHILQIMLLS 827
Query: 624 ---IEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
+EKANS +R+ I+ DE+H + G
Sbjct: 828 PPNVEKANSWAHRIKR---------IIFDEVHCIGQAQEG 858
Score = 59 (25.8 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 39/194 (20%), Positives = 70/194 (36%)
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXX 684
++A +V+ + E+G+ S + + + D+NRG R
Sbjct: 934 DQAKRVVHGLDEQGK-SPFSFV--HPIGSIVDRNRG-TLDDISLEARDCLKLWLSMRKHQ 989
Query: 685 XXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIY 744
K DP+ L + A ++ + L+A L P E ++ G+ +
Sbjct: 990 TEAFPVADKLDPSQALPAIVKKA---DILCWEEDLKACLLPWMMDPESPFESVR-GDLRF 1045
Query: 745 SKKMDV-VRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFL 803
D+ R L P+H L D ++G +IF R CES + V L
Sbjct: 1046 CNNGDMQTRNKRKGEQLS---PEHFQLLLDLHQRQGLPAIIFNYDRMKCESIMKSVISEL 1102
Query: 804 KKFSINVHSSDSEF 817
K+ + + E+
Sbjct: 1103 KRHELEWKKTSKEW 1116
Score = 41 (19.5 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 66 SLLSRHEVVKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSEVGCHMK 125
S L RHE+ + S E K KD + ++ + + + +EG S++ +
Sbjct: 1100 SELKRHELEWKKTSKEWQKTIKDYEKWVKAQEKIKETKQGRKQDKNGLEEGMSKMDFVRE 1159
Query: 126 DGSAHI 131
+G +
Sbjct: 1160 EGQEEV 1165
Score = 38 (18.4 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 282 SIFSPGEAFWNEAIEIADGFFAHTDIG 308
++F+P + AI AD F D+G
Sbjct: 201 TVFTPTH---DNAIPFADQLFPEEDVG 224
Score = 37 (18.1 bits), Expect = 7.4e-11, Sum P(3) = 7.4e-11
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 266 IVKTYVRETPKSTCGNSIFSPGEAFWNEAIEI 297
+V + +E K+ G + + E FW IE+
Sbjct: 618 LVAIFDKEV-KTGKGKGLAAIVEVFWTRVIEL 648
>ASPGD|ASPL0000044033 [details] [associations]
symbol:AN2482 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:BN001307 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 OMA:FPGKHYC InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GO:GO:0008026 OrthoDB:EOG4H75KM
EMBL:AACD01000041 RefSeq:XP_660086.1 ProteinModelPortal:Q5BAE8
EnsemblFungi:CADANIAT00009203 GeneID:2875191 KEGG:ani:AN2482.2
Uniprot:Q5BAE8
Length = 2015
Score = 183 (69.5 bits), Expect = 6.4e-11, Sum P(4) = 6.4e-11
Identities = 79/294 (26%), Positives = 126/294 (42%)
Query: 700 LQIVGMSATMPNVAAVADWL--QAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTA 757
++++GMS N + +A+WL + LY NFR V IY R
Sbjct: 1290 VRLMGMSTACANASDLANWLGVKEGLY--NFR----HSVRPVPLEIYIDGFPEQRGFCPL 1343
Query: 758 ANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF 817
+ P + + + ++ V++F +SR+ TA+ + F + + F
Sbjct: 1344 MQSMNR-PTFLA-IKNHSPEK--PVIVFVASRRQTRLTAKDLINFC-----GMEDNPRRF 1394
Query: 818 IDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS 877
+ + S D D L E L G+ HHAGL +R++ E + +++L ATS
Sbjct: 1395 VRM-SEDDLQLNLERVKDDALREALSFGIGLHHAGLVESDRQLAEELFANNKIQILVATS 1453
Query: 878 TLAAGVNLPARRVIFRQPRI------GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931
TLA GVNLPA V+ + + G +D T QM GRAGR D+ G + + +
Sbjct: 1454 TLAWGVNLPAHLVVVKGTQFFDAKTEGYKDMDLTDVLQMLGRAGRPQFDSSGIARIFTQD 1513
Query: 932 EEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCT 985
+ L+ P + S L + + H EV AG I T +D Y+ T
Sbjct: 1514 SKKAFYKHFLHTGFP-VESTLHKVLDN--HLGAEVSAGTIA-TKQDALDYLTWT 1563
Score = 153 (58.9 bits), Expect = 0.00022, Sum P(6) = 0.00022
Identities = 56/194 (28%), Positives = 95/194 (48%)
Query: 700 LQIVGMSATMPNVAAVADWLQ----AALY--ETNFRPVPLEE-YIKVGNAIYSKKM-DVV 751
++IVG+SAT+PN VAD+L+ A L+ +++FRPVPLE+ +I V SK+ D +
Sbjct: 461 IRIVGLSATLPNYVDVADFLKVNKMAGLFFFDSSFRPVPLEQHFIGVKGKPGSKQSRDNI 520
Query: 752 RTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVH 811
T+ E ++++ GH V++F SRK TAR + + +
Sbjct: 521 DTVT-------------FEKVRDMLERGHQVMVFVHSRKDTVLTARMLKQMAVQDGCEAL 567
Query: 812 SSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR 871
S E + ++A+ ++ A L + SG HHAG++ +R ++E G+
Sbjct: 568 FSCHEHENYSNALRDMKHARAR---ELRDLFASGFGTHHAGMSRSDRNLMEPTLAWGVN- 623
Query: 872 VLTATSTLAAGVNL 885
L A + + G L
Sbjct: 624 -LPAAAVVIKGTQL 636
Score = 89 (36.4 bits), Expect = 6.4e-11, Sum P(4) = 6.4e-11
Identities = 53/253 (20%), Positives = 95/253 (37%)
Query: 493 PSSSGMLKDCLDLS----SWLPSEICS-IYKKRGISKLYPWQVECLHVDGVLQRRNLVYC 547
P + + D L+L S L + I +Y +R P Q + HV N++
Sbjct: 1097 PDTESVYTDLLELQPLPISALKNPILEELYGQR-FQYFNPMQTQLFHVL-YHTAANVLLG 1154
Query: 548 ASTSAGKSFVAEILMLRRLIST-GKMALLVLPYVSICAEKA-EHLEVLLEPLGRHVRSYY 605
+ T +GK+ AE+ M G + + P ++ E+ + L P+G +
Sbjct: 1155 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRERVMDWGRRLTAPMGLKLVELT 1214
Query: 606 G-NQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXX 664
G N +D + + T EK + + + ++ +++IDE+H++ +RG
Sbjct: 1215 GDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYVRKVSLVIIDEIHLLGG-DRGPILE 1273
Query: 665 XXXXXXRYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMSATMPNVAAVADWLQAALY 724
Y A +D A+ L G+ + N +
Sbjct: 1274 IIVSRMNYIASQSKGSVRLMGMSTACANASDLANWL---GVKEGLYN------------F 1318
Query: 725 ETNFRPVPLEEYI 737
+ RPVPLE YI
Sbjct: 1319 RHSVRPVPLEIYI 1331
Score = 53 (23.7 bits), Expect = 0.00022, Sum P(6) = 0.00022
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 1068 TPINVE--VEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMR 1116
TPI+ + + PD E Y LEL L S + E Y R + PM+
Sbjct: 1087 TPISFQHLIRPDTESVYTDLLELQPLPISALKNPILEELYGQRFQYFNPMQ 1137
Score = 52 (23.4 bits), Expect = 6.4e-11, Sum P(4) = 6.4e-11
Identities = 16/90 (17%), Positives = 43/90 (47%)
Query: 34 DAKITVEVSPSAKGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLEIDKYSKDEKNQA 93
D + ++ + S+ GT+D+ D ++ + + +++ +S + D+ ++ Q
Sbjct: 42 DLDLDLDENSSSAGTVDDVWDLISFDEESTSEGIYEIDDLLSPPVSEQYDQTWLQQRCQL 101
Query: 94 LLSDQAQPQ---ATQKVISRCSSKEGNSEV 120
L S Q + Q++I+ ++ G+ E+
Sbjct: 102 LASQQPGVELNEVAQQIIAALATDSGDDEL 131
Score = 47 (21.6 bits), Expect = 8.4e-07, Sum P(4) = 8.4e-07
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRLISTGK 571
N++ CA T AGK+ A ML L + GK
Sbjct: 303 NMLICAPTGAGKTDAA---MLTILNAVGK 328
Score = 42 (19.8 bits), Expect = 0.00022, Sum P(6) = 0.00022
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 1381 LESAGEKLLETSDNELSALVEGGSITELQQKFD 1413
+ES K+L DN L A V G+I Q D
Sbjct: 1529 VESTLHKVL---DNHLGAEVSAGTIATKQDALD 1558
Score = 39 (18.8 bits), Expect = 0.00042, Sum P(6) = 0.00042
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYL---EKKAYTLAGMKFSLYTAADIANVL 1799
V+ D E+ +G D L+ ++ ++ Y+ K + L GM + A+D+AN L
Sbjct: 1256 VIID-EIHLLGGDRGPILE---IIVSRMNYIASQSKGSVRLMGMSTACANASDLANWL 1309
Score = 38 (18.4 bits), Expect = 6.4e-11, Sum P(4) = 6.4e-11
Identities = 25/126 (19%), Positives = 44/126 (34%)
Query: 1955 ALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCS 2014
+L L S PHG + T+ S S ++ RL + LS L
Sbjct: 1801 SLTSLTSLPHGAITTLPGKLHLPASLHSQFTKATSYLPRLAVSVPLS-SERGLSVSLTRK 1859
Query: 2015 SNEAKEKIKSFKSSFPGVAS-WLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKA 2073
++ + + + FP + + V + G L KR GNN + + +
Sbjct: 1860 NHPSNPDFRIYAPRFPKPQTEGFFLLVCASKSDGQDGDLLALKRV--SWPTGNNNDHNNS 1917
Query: 2074 QRQAVN 2079
+ +N
Sbjct: 1918 NGKGLN 1923
>DICTYBASE|DDB_G0267464 [details] [associations]
symbol:polA "mitochondrial DNA polymerase A"
species:44689 "Dictyostelium discoideum" [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 SMART:SM00279
SMART:SM00475 SMART:SM00482 dictyBase:DDB_G0267464
GenomeReviews:CM000150_GR GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000003 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 HSSP:P19821 EMBL:AY170439 RefSeq:XP_647557.1
ProteinModelPortal:Q8I7W9 STRING:Q8I7W9 EnsemblProtists:DDB0191131
GeneID:8616365 KEGG:ddi:DDB_G0267464 OMA:TATKWIQ Uniprot:Q8I7W9
Length = 1369
Score = 223 (83.6 bits), Expect = 8.5e-11, Sum P(4) = 8.5e-11
Identities = 96/357 (26%), Positives = 161/357 (45%)
Query: 1835 VPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCV 1894
+ + E ++ LLN T I L +++ S + LH + +T TGRLS ++PNLQ
Sbjct: 1043 INALLELGSIGTLLN-TF--IIPLQKLADSNSR--LHTS-INVNTETGRLSSKKPNLQNQ 1096
Query: 1895 EHMVEFKMSNEDIYG---GNAEV--DHCKINARDF-FIPSQENWIL---LAADY-SQIEL 1944
+ + + + GN + D+ ++ R I + ++ I + D+ S+ +
Sbjct: 1097 PALEKDRYKIRKAFTCEPGNTLIVADYGQLELRLLAHITNCKSMITAFQVGGDFHSRTAM 1156
Query: 1945 RLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSED------SVGSQERDQTKRLIYGI 1998
+ H + A+ G+V W G E +V + ER + K L + I
Sbjct: 1157 GMYPHVKE--AI------DRGEVLL----EWDGEGEPPKPLLKNVYASERRKAKTLNFSI 1204
Query: 1999 LYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRF 2058
YG + LS+ + NEAKE + + P V W + + H+ G+ +L GR R
Sbjct: 1205 AYGKTAHGLSQDWGVTLNEAKETLNRWYEDRPEVLVWQRKTIETAHKYGWTRTLMGRYRQ 1264
Query: 2059 LSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQM 2118
L IK GN K A+R ++N+ QG AADI+ AM+ I N ++
Sbjct: 1265 LPDIK-GNKGMKGHAERASINTPLQGGAADIVMKAMLIIED---------------NKRL 1308
Query: 2119 LKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAAL--LLVPLLVKIQVGSTW 2173
+ +L++Q+HDEL+LE EA S++ M + LL+ L+V + TW
Sbjct: 1309 KELGFKLIMQIHDELILEGPEQHADEARSIMMNLMSNPLTTPLLIDLVVDCRYAKTW 1365
Score = 48 (22.0 bits), Expect = 8.5e-11, Sum P(4) = 8.5e-11
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 795 TARHVSKFLKKFSINVHSSDSEFIDI 820
TAR V L K H+ D+E IDI
Sbjct: 640 TARMVVSILMKQKDRFHACDTEVIDI 665
Score = 41 (19.5 bits), Expect = 8.5e-11, Sum P(4) = 8.5e-11
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 999 SAQDS-LRWLC----HRKF--LEWNEDTKLYSTTPLGRAAFGSSLCPEE 1040
S+ DS L WL H K +EWN+ T ++ L FG L E
Sbjct: 827 SSLDSELTWLLRENIHIKLRDMEWNQGTTMWDFYYLMWRPFGHLLTEME 875
Score = 40 (19.1 bits), Expect = 8.5e-11, Sum P(4) = 8.5e-11
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 463 SQGIDSITSDSPTNVIKKPV 482
S G + I PTNVIKK +
Sbjct: 120 SNG-EKIYFKKPTNVIKKTI 138
Score = 38 (18.4 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 626 KANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658
+A+ +N +LE G + + I L +AD N
Sbjct: 1038 EASIAINALLELGSIGTLLNTFIIPLQKLADSN 1070
Score = 37 (18.1 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 44 SAKGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLEIDKYSKDE 89
S K +++ K D+ + + + E +K+N S Y DE
Sbjct: 567 SIKSSVEKLNKLFSDNQEITTSTSTTNLETIKKNYSKVEFNYIDDE 612
>ASPGD|ASPL0000070749 [details] [associations]
symbol:mtr4 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
Uniprot:Q5B4W8
Length = 1073
Score = 205 (77.2 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 54/176 (30%), Positives = 95/176 (53%)
Query: 759 NLGG-KDPDHIVELCDEVVQEG-HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSE 816
N GG ++ D I ++ ++ + + V++F S++ CE A +K + N S+ E
Sbjct: 388 NKGGTQEKDDIYKIVKMIMLKSLNPVIVFSFSKRECEFYALK----MKSLAFN-DDSEKE 442
Query: 817 FID--ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVR 871
+ SAI+ L L P ++ LP G+ HH+GL +E +E +++GL++
Sbjct: 443 MVSKVFNSAIEMLSEEDRNL-PQIQNILPLLRRGIGVHHSGLLPILKETIEILFQEGLIK 501
Query: 872 VLTATSTLAAGVNLPARRVIFRQPR----IGRDFIDGTRYRQMAGRAGRTGIDTKG 923
VL AT T + G+N+PA+ V+F R + ++ + + QM+GRAGR G+D +G
Sbjct: 502 VLFATETFSIGLNMPAKTVVFTSVRKFDGFSQRWVTPSEFVQMSGRAGRRGLDDRG 557
Score = 182 (69.1 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 100/441 (22%), Positives = 178/441 (40%)
Query: 483 GNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYKK-RGISKLYPWQVECLHVDGV--L 539
G + EAG S ++ + + P S +K ++++P+ ++ V +
Sbjct: 105 GLQAEKEAGPVVLSHQVRHQVAIPPKYPYVPISQHKPPENPARVWPFTLDPFQQVAVSSI 164
Query: 540 QR-RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598
QR +++ A TSAGK+ VAE + + L + + P ++ +K +G
Sbjct: 165 QRGESVLVSAHTSAGKTVVAEYAIAQSL-KNNQRVIYTSPIKALSNQKYREFAAEFGDVG 223
Query: 599 RHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658
G ++ + V T E S++ R E R E+ +V DE+H + D
Sbjct: 224 LMT-------GDVTINPTATCLVMTTEILRSMLYRGSEIMR--EVAWVVFDEIHYMRDAT 274
Query: 659 RGYXXXXXXXXX----RYAAXXXXXXXXXXXXXXXXXXKADPAHGLQIVGMSATMPNV-- 712
RG RY P H + + +
Sbjct: 275 RGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHNQPCHVVYTDFRPTPLQHYFF 334
Query: 713 AAVADWLQAALYETN-FRPVPLEEYIKVGNAIYSKKMDVVRTILTAA---------NLGG 762
A ++ + + E FR E + K ++I KK D L N GG
Sbjct: 335 PAGSEGMHLIVDEKGVFRE---ENFQKAMSSIADKKGDDPADALAKRKGKGKDKKLNKGG 391
Query: 763 -KDPDHIVELCDEVVQEG-HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFID- 819
++ D I ++ ++ + + V++F S++ CE A +K + N S+ E +
Sbjct: 392 TQEKDDIYKIVKMIMLKSLNPVIVFSFSKRECEFYALK----MKSLAFN-DDSEKEMVSK 446
Query: 820 -ITSAIDALRRCPAGLDPVLEETLP---SGVAYHHAGLTVEEREVVETCYRKGLVRVLTA 875
SAI+ L L P ++ LP G+ HH+GL +E +E +++GL++VL A
Sbjct: 447 VFNSAIEMLSEEDRNL-PQIQNILPLLRRGIGVHHSGLLPILKETIEILFQEGLIKVLFA 505
Query: 876 TSTLAAGVNLPARRVIFRQPR 896
T T + G+N+PA+ V+F R
Sbjct: 506 TETFSIGLNMPAKTVVFTSVR 526
Score = 40 (19.1 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 2136 EVDPSVIKEAVSLVQKCMESA 2156
E+DP+V KE V Q + SA
Sbjct: 566 EMDPAVAKEIVRGEQDRLNSA 586
Score = 40 (19.1 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 2049 VESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQG 2084
++ LK RKR L + F N E + + + I G
Sbjct: 878 LDELKCRKRVLRRFGFINEAEVVQLKARVACEISTG 913
>UNIPROTKB|J9P0M0 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102154 EMBL:AAEX03010133 EMBL:AAEX03010134
EMBL:AAEX03010135 Ensembl:ENSCAFT00000044956 Uniprot:J9P0M0
Length = 1708
Score = 223 (83.6 bits), Expect = 4.7e-10, Sum P(4) = 4.7e-10
Identities = 52/150 (34%), Positives = 81/150 (54%)
Query: 845 GVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDG 904
G+ YHH+ L+ +++++VE +RKG +RV+TAT TLA G+N+P + V+F Q I ++D
Sbjct: 1256 GIGYHHSSLSFKDKQLVEVLFRKGFIRVVTATGTLALGINMPCKSVVFAQNSI---YLDA 1312
Query: 905 TRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAIL 964
YRQM+GRAGR G D G+ P + KI L+ + P L + G+T +
Sbjct: 1313 LNYRQMSGRAGRRGQDLMGDVYFFGIP--LPKIEKLIKSNVPELRG---QFPLGITLVLR 1367
Query: 965 EVVAGGIVQTAEDIHRYVRCTLLNSTKPFQ 994
++ ED V L +S F+
Sbjct: 1368 LMLLASKADDPEDAKAKVLSVLKHSLLSFK 1397
Score = 46 (21.3 bits), Expect = 4.7e-10, Sum P(4) = 4.7e-10
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 528 WQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK-MALLVLP 578
WQ E L V V + V A TS+GK++ + M + L + + + + V P
Sbjct: 763 WQRELLDV--VDNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAP 812
Score = 41 (19.5 bits), Expect = 4.7e-10, Sum P(4) = 4.7e-10
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 703 VGMSATMPNVAAVADWLQA 721
+ +SAT+ N + +WLQ+
Sbjct: 911 LALSATISNPEHLTEWLQS 929
Score = 39 (18.8 bits), Expect = 4.7e-10, Sum P(4) = 4.7e-10
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 2079 NSICQGSAADIIKIAMINIHSIIV 2102
N + +G+A D++K + I SI V
Sbjct: 1654 NRLHEGAAYDLLKDFALTIKSISV 1677
Score = 38 (18.4 bits), Expect = 2.9e-09, Sum P(4) = 2.9e-09
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 611 GSLPKDTSVAVCTIEKANSLVNRMLE 636
G KD ++AV +++ SLV + E
Sbjct: 657 GETTKDLNIAVQMMKRIYSLVGKYPE 682
>UNIPROTKB|E2QSY2 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003727
GO:GO:0051607 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 OMA:QDCTYAD
GO:GO:1900245 GO:GO:1900246 GeneTree:ENSGT00690000102154
EMBL:AAEX03010133 EMBL:AAEX03010134 EMBL:AAEX03010135
Ensembl:ENSCAFT00000014321 Uniprot:E2QSY2
Length = 1711
Score = 223 (83.6 bits), Expect = 4.8e-10, Sum P(4) = 4.8e-10
Identities = 52/150 (34%), Positives = 81/150 (54%)
Query: 845 GVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDG 904
G+ YHH+ L+ +++++VE +RKG +RV+TAT TLA G+N+P + V+F Q I ++D
Sbjct: 1259 GIGYHHSSLSFKDKQLVEVLFRKGFIRVVTATGTLALGINMPCKSVVFAQNSI---YLDA 1315
Query: 905 TRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAIL 964
YRQM+GRAGR G D G+ P + KI L+ + P L + G+T +
Sbjct: 1316 LNYRQMSGRAGRRGQDLMGDVYFFGIP--LPKIEKLIKSNVPELRG---QFPLGITLVLR 1370
Query: 965 EVVAGGIVQTAEDIHRYVRCTLLNSTKPFQ 994
++ ED V L +S F+
Sbjct: 1371 LMLLASKADDPEDAKAKVLSVLKHSLLSFK 1400
Score = 46 (21.3 bits), Expect = 4.8e-10, Sum P(4) = 4.8e-10
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 528 WQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK-MALLVLP 578
WQ E L V V + V A TS+GK++ + M + L + + + + V P
Sbjct: 766 WQRELLDV--VDNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAP 815
Score = 41 (19.5 bits), Expect = 4.8e-10, Sum P(4) = 4.8e-10
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 703 VGMSATMPNVAAVADWLQA 721
+ +SAT+ N + +WLQ+
Sbjct: 914 LALSATISNPEHLTEWLQS 932
Score = 39 (18.8 bits), Expect = 4.8e-10, Sum P(4) = 4.8e-10
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 2079 NSICQGSAADIIKIAMINIHSIIV 2102
N + +G+A D++K + I SI V
Sbjct: 1657 NRLHEGAAYDLLKDFALTIKSISV 1680
Score = 39 (18.8 bits), Expect = 2.3e-09, Sum P(4) = 2.3e-09
Identities = 12/60 (20%), Positives = 28/60 (46%)
Query: 579 YVSICAEKAEHLEVLLEPLGRHVRSY--YGNQGGGSLPKDTSVAVCTIEKANSLVNRMLE 636
++ C + +V + L ++++ + G KD ++AV +++ SLV + E
Sbjct: 626 FLKSCKSNSVKYQVEMVALNACLKAWKEHCQDSQGETTKDLNIAVQMMKRIYSLVGKYPE 685
>DICTYBASE|DDB_G0278827 [details] [associations]
symbol:DDB_G0278827 "Probable ATP-dependent RNA
helicase DDX60" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0278827 GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AAFI02000024 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 RefSeq:XP_641993.1
ProteinModelPortal:Q54XN7 EnsemblProtists:DDB0206223 GeneID:8621725
KEGG:ddi:DDB_G0278827 InParanoid:Q54XN7 OMA:RESALIC Uniprot:Q54XN7
Length = 1816
Score = 155 (59.6 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 42/109 (38%), Positives = 58/109 (53%)
Query: 835 DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894
DP L L G+A HH G VE +R ++V+ ATSTLA GVN PA+ +F
Sbjct: 1259 DP-LAPALTQGIAAHHGGCDKNYLRNVEYLFRSKKIQVVFATSTLAVGVNAPAKSSVF-- 1315
Query: 895 PRIGRD-FIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLN 942
+G +++ +Q AGRAGR G D G + + P++ KI LLN
Sbjct: 1316 --LGDSPYLNVLTSKQCAGRAGRRGFDNYGNVIFVGLPKQ--KINRLLN 1360
Score = 94 (38.1 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 528 WQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA 587
WQVE L + V +R + + CASTS+GK+F++ +++ ++V +C KA
Sbjct: 821 WQVELLDI--VDKRESALICASTSSGKTFIS-FYCFEQILKESNDGIVVF----VCPTKA 873
Query: 588 EHLEVLLEPLGRHVRSY 604
++ E LGR+ ++Y
Sbjct: 874 LVNQMYAEVLGRYDKNY 890
Score = 44 (20.5 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 418 SVTHKSCQKIKFKCHHDNTSRTEGISDVQEKDSVLIVHER 457
S C ++ + ++D T R + ++EK + +V ER
Sbjct: 1166 SFNRSLCSRLAQRVYNDITHRNTNPNIIEEKKQLDLVIER 1205
>RGD|1560014 [details] [associations]
symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 60"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003725
"double-stranded RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1560014 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00690000102154 IPI:IPI00358301
Ensembl:ENSRNOT00000019667 Uniprot:F1M4N8
Length = 1304
Score = 217 (81.4 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 44/111 (39%), Positives = 68/111 (61%)
Query: 838 LEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI 897
L++ G+ YHH+ +T +E+++VE +RKG +RV+TAT TL+ G+N+P + V+F Q +
Sbjct: 845 LKKLARRGIGYHHSSMTNKEKQLVEILFRKGFIRVVTATRTLSLGINMPCKSVVFAQNSV 904
Query: 898 GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPL 948
++D YRQM+GRAGR G D G+ P + KI L+ P L
Sbjct: 905 ---YLDALNYRQMSGRAGRRGQDLLGDVYFFDIP--LPKIGKLIKSKVPDL 950
Score = 44 (20.5 bits), Expect = 3.6e-09, Sum P(5) = 3.6e-09
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 528 WQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK-MALLVLP 578
WQ E L V V + V A TS+GK++ + M + L + + + + V P
Sbjct: 359 WQRELLDV--VDNYESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAP 408
Score = 41 (19.5 bits), Expect = 3.3e-09, Sum P(4) = 3.3e-09
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 703 VGMSATMPNVAAVADWLQA 721
+ +SAT+ N + +WLQ+
Sbjct: 507 LALSATISNPQHLTEWLQS 525
Score = 40 (19.1 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 988 NSTKPFQDVVKSAQDSLRWLCHRK 1011
N K F +KS SLR LC +
Sbjct: 1259 NLLKDFYLTIKSISVSLRELCENE 1282
Score = 40 (19.1 bits), Expect = 3.8e-09, Sum P(6) = 3.8e-09
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 64 KQSLLSRHEVVKR-NLSLEIDK--YSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSEV 120
K+ + E K N+++ + K +S EK+ LL + A QK+I+RC + G E+
Sbjct: 246 KEHCRAEGEATKDFNIAVNMMKRIHSLLEKHSELLQE-----ADQKLIARCLTYLGFYEL 300
Score = 39 (18.8 bits), Expect = 3.8e-09, Sum P(6) = 3.8e-09
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 173 PSLLGGEDNKIAKKKYCV 190
P+ +D K+ KKKY V
Sbjct: 306 PTQEAADDVKMTKKKYSV 323
Score = 37 (18.1 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 74 VKRNLSLEIDKYSKDEKNQALLSDQAQPQATQKVISRCSSKEGNSEV--GCHMKDGSAHI 131
VK++L + + K +K+ L +A + + S E N E+ C D A
Sbjct: 768 VKKSLEKQKIRDEKGQKSSRRLDQSIMYEAEHDYLLK--SLEKNLEIPKDCTYADQKAID 825
Query: 132 PESLEL 137
E+L++
Sbjct: 826 EEALQM 831
Score = 37 (18.1 bits), Expect = 3.3e-09, Sum P(4) = 3.3e-09
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 611 GSLPKDTSVAVCTIEKANSLVNRMLE 636
G KD ++AV +++ +SL+ + E
Sbjct: 253 GEATKDFNIAVNMMKRIHSLLEKHSE 278
Score = 37 (18.1 bits), Expect = 3.6e-09, Sum P(5) = 3.6e-09
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 351 QHIKAGGSLKQMGKDVIDSVKELSPLPIKHLDFLFE-DKNL 390
+H +A G + ++ +K + L KH + L E D+ L
Sbjct: 247 EHCRAEGEATKDFNIAVNMMKRIHSLLEKHSELLQEADQKL 287
>UNIPROTKB|Q8IY21 [details] [associations]
symbol:DDX60 "Probable ATP-dependent RNA helicase DDX60"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0009615 "response to
virus" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:1900245 "positive regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AC068989 EMBL:BC007820
EMBL:BC038115 EMBL:AK001649 IPI:IPI00217606 RefSeq:NP_060101.3
UniGene:Hs.591710 ProteinModelPortal:Q8IY21 SMR:Q8IY21
IntAct:Q8IY21 STRING:Q8IY21 PhosphoSite:Q8IY21 DMDM:296439377
PaxDb:Q8IY21 PRIDE:Q8IY21 Ensembl:ENST00000393743 GeneID:55601
KEGG:hsa:55601 UCSC:uc003irp.3 CTD:55601 GeneCards:GC04M169137
HGNC:HGNC:25942 HPA:HPA046952 MIM:613974 neXtProt:NX_Q8IY21
PharmGKB:PA162383444 eggNOG:COG4581 HOGENOM:HOG000169263
HOVERGEN:HBG107797 InParanoid:Q8IY21 OMA:QDCTYAD OrthoDB:EOG4XSKP0
PhylomeDB:Q8IY21 GenomeRNAi:55601 NextBio:60142 ArrayExpress:Q8IY21
Bgee:Q8IY21 CleanEx:HS_DDX60 Genevestigator:Q8IY21 GO:GO:1900245
GO:GO:1900246 Uniprot:Q8IY21
Length = 1712
Score = 216 (81.1 bits), Expect = 7.8e-10, Sum P(6) = 7.8e-10
Identities = 44/104 (42%), Positives = 65/104 (62%)
Query: 845 GVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDG 904
G+ YHH+ ++ +E+++VE +RKG +RV+TAT TLA GVN+P + V+F Q + ++D
Sbjct: 1260 GIGYHHSAMSFKEKQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVFAQNSV---YLDA 1316
Query: 905 TRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPL 948
YRQM+GRAGR G D G+ P KI L+ + P L
Sbjct: 1317 LNYRQMSGRAGRRGQDLMGDVYFFDIP--FPKIGKLIKSNVPEL 1358
Score = 55 (24.4 bits), Expect = 7.8e-10, Sum P(6) = 7.8e-10
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 719 LQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQE 778
+ A YE + + L +IK GN + +M V++ + A+L ++ + L E +++
Sbjct: 1067 MDARKYEESLK-AELTSWIKNGN-VEQARM-VLQNLSPEADLSPENMITMFPLLVEKLRK 1123
Query: 779 GHSV--LIFCSSRKGCESTARHVSKFLKK 805
+ L F E+ A VS FLKK
Sbjct: 1124 MEKLPALFFLFKLGAVENAAESVSTFLKK 1152
Score = 46 (21.3 bits), Expect = 7.8e-10, Sum P(6) = 7.8e-10
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 528 WQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILM 562
WQ E L V V + + V A TS+GK++ + M
Sbjct: 767 WQRELLDV--VDKNESAVIVAPTSSGKTYASYYCM 799
Score = 43 (20.2 bits), Expect = 1.5e-09, Sum P(6) = 1.5e-09
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 611 GSLPKDTSVAVCTIEKANSLVNRMLE 636
G KD S+AV +++ +SL+ + E
Sbjct: 660 GKTTKDLSIAVQVMKRIHSLMEKYSE 685
Score = 42 (19.8 bits), Expect = 7.8e-10, Sum P(6) = 7.8e-10
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 376 LPIKHLDFLFEDKNLKG 392
L +K++ F +E++N+KG
Sbjct: 379 LLLKNIAFYYENENVKG 395
Score = 41 (19.5 bits), Expect = 7.8e-10, Sum P(6) = 7.8e-10
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 703 VGMSATMPNVAAVADWLQA 721
+ +SAT+ N + +WLQ+
Sbjct: 915 LALSATISNPEHLTEWLQS 933
Score = 37 (18.1 bits), Expect = 7.8e-10, Sum P(6) = 7.8e-10
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 991 KPFQDVVKSAQDSLRWLCHRK 1011
K F +KS SLR LC +
Sbjct: 1670 KDFALTIKSISVSLRELCENE 1690
>UNIPROTKB|A6NGI5 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00973
GO:GO:0008026 EMBL:BX323048 EMBL:AC098691 HGNC:HGNC:20193
HOGENOM:HOG000293238 HOVERGEN:HBG103774 ChiTaRS:HFM1
IPI:IPI00852573 ProteinModelPortal:A6NGI5 STRING:A6NGI5
Ensembl:ENST00000370424 ArrayExpress:A6NGI5 Bgee:A6NGI5
Uniprot:A6NGI5
Length = 1114
Score = 201 (75.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 88/302 (29%), Positives = 139/302 (46%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMD-VVRTILTAA 758
++ V +SAT+PN +A+WL E RP +K+ + K+ VV ++
Sbjct: 130 MRFVAVSATIPNAEDIAEWLSDG--E---RPAVC---LKMDESHRPVKLQKVVLGFPCSS 181
Query: 759 NLGGKDPDHIVEL-CDEVVQ---EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814
N D + V+Q + L+FC++RKG + A S+ V D
Sbjct: 182 NQTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAA----------SVLV--KD 229
Query: 815 SEFIDITSAIDALRRCPAGL-DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVL 873
++FI L++ + D L + L G AYHHAG+ + +R+VVE + G + VL
Sbjct: 230 AKFIMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVL 289
Query: 874 TATSTLAAGVNLPARRVIFRQPR--IGRDFID--GTRYRQMAGRAGRTGIDTKGESMLIC 929
TSTLA GVNLPA V+ + G F + T QM GRAGR DT ++++
Sbjct: 290 FTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMT 349
Query: 930 KPEEVKKIMGLLNESC-PPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIH---RYVRCT 985
+ K + +L +C + S L H I + A ++ T D++ ++R T
Sbjct: 350 RLSTRDKYIQML--ACRDTVESSLHR------HLIEHLNAEIVLHTITDVNIAVEWIRST 401
Query: 986 LL 987
LL
Sbjct: 402 LL 403
Score = 38 (18.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 2048 YVESLKGRKRFLSKIKFGNNKE--KSKAQRQAVNSICQGSAADIIKI 2092
Y+ +LK + G NK+ ++K Q + ++ S+ D+IK+
Sbjct: 404 YIRALKNPSHY--GFASGLNKDGIEAKLQELCLKNLNDLSSLDLIKM 448
>UNIPROTKB|A2PYH4 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0008026 KO:K15271
EMBL:AB204867 EMBL:AK094079 EMBL:BX323048 EMBL:AC098691
IPI:IPI00374013 IPI:IPI00852603 RefSeq:NP_001017975.3
UniGene:Hs.454818 ProteinModelPortal:A2PYH4 SMR:A2PYH4
STRING:A2PYH4 PhosphoSite:A2PYH4 PaxDb:A2PYH4 PRIDE:A2PYH4
Ensembl:ENST00000294696 Ensembl:ENST00000370425 GeneID:164045
KEGG:hsa:164045 UCSC:uc001doa.4 CTD:164045 GeneCards:GC01M091726
HGNC:HGNC:20193 HPA:HPA035557 neXtProt:NX_A2PYH4
PharmGKB:PA142671690 HOGENOM:HOG000293238 HOVERGEN:HBG103774
InParanoid:A2PYH4 OMA:EADEMKS OrthoDB:EOG44XJHC ChiTaRS:HFM1
GenomeRNAi:164045 NextBio:88429 ArrayExpress:A2PYH4 Bgee:A2PYH4
CleanEx:HS_HFM1 Genevestigator:A2PYH4 Uniprot:A2PYH4
Length = 1435
Score = 201 (75.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 88/302 (29%), Positives = 139/302 (46%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMD-VVRTILTAA 758
++ V +SAT+PN +A+WL E RP +K+ + K+ VV ++
Sbjct: 451 MRFVAVSATIPNAEDIAEWLSDG--E---RPAVC---LKMDESHRPVKLQKVVLGFPCSS 502
Query: 759 NLGGKDPDHIVEL-CDEVVQ---EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814
N D + V+Q + L+FC++RKG + A S+ V D
Sbjct: 503 NQTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAA----------SVLV--KD 550
Query: 815 SEFIDITSAIDALRRCPAGL-DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVL 873
++FI L++ + D L + L G AYHHAG+ + +R+VVE + G + VL
Sbjct: 551 AKFIMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVL 610
Query: 874 TATSTLAAGVNLPARRVIFRQPR--IGRDFID--GTRYRQMAGRAGRTGIDTKGESMLIC 929
TSTLA GVNLPA V+ + G F + T QM GRAGR DT ++++
Sbjct: 611 FTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMT 670
Query: 930 KPEEVKKIMGLLNESC-PPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIH---RYVRCT 985
+ K + +L +C + S L H I + A ++ T D++ ++R T
Sbjct: 671 RLSTRDKYIQML--ACRDTVESSLHR------HLIEHLNAEIVLHTITDVNIAVEWIRST 722
Query: 986 LL 987
LL
Sbjct: 723 LL 724
Score = 156 (60.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 71/304 (23%), Positives = 134/304 (44%)
Query: 518 KKRGISKLYPW--QVECLHVDGVLQR-RNLVYCASTSAGKSFVAEILMLRRLISTG---- 570
K R I K +P+ ++ D +L RN V CA T +GK+ V E+ + R L+
Sbjct: 270 KFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWL 329
Query: 571 KMALLVL-PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSL--PKDTSVAVCTIEKA 627
+ ++ + P ++C+++ + + P+G + + G+ L + + + T EK
Sbjct: 330 NIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKW 389
Query: 628 NSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYXXXXXXXXXRYAAXXXXXXXXXXXXX 687
+S+ + + + + + +IDE+H+V D+NRG +
Sbjct: 390 DSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTST-- 447
Query: 688 XXXXXKADPAHGLQIVGMSATMPNVAAVADWL----QAAL---YETNFRPVPLEEYIKVG 740
A P ++ V +SAT+PN +A+WL + A+ + + RPV L++ + +G
Sbjct: 448 ------AIP---MRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVV-LG 497
Query: 741 NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVS 800
S + + + LT L K I D+ L+FC++RKG + A +
Sbjct: 498 FPCSSNQTEF-KFDLT---LNYKIASVIQMYSDQ-----KPTLVFCATRKGVQQAASVLV 548
Query: 801 KFLK 804
K K
Sbjct: 549 KDAK 552
Score = 38 (18.4 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 2048 YVESLKGRKRFLSKIKFGNNKE--KSKAQRQAVNSICQGSAADIIKI 2092
Y+ +LK + G NK+ ++K Q + ++ S+ D+IK+
Sbjct: 725 YIRALKNPSHY--GFASGLNKDGIEAKLQELCLKNLNDLSSLDLIKM 769
>UNIPROTKB|Q5H9U9 [details] [associations]
symbol:DDX60L "Probable ATP-dependent RNA helicase
DDX60-like" species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 HOGENOM:HOG000169263 HOVERGEN:HBG107797
EMBL:AL832950 EMBL:CR933601 EMBL:AC079926 EMBL:AC093888
EMBL:AK055595 IPI:IPI00853133 IPI:IPI00935252 RefSeq:NP_001012985.1
UniGene:Hs.535011 ProteinModelPortal:Q5H9U9 STRING:Q5H9U9
PhosphoSite:Q5H9U9 DMDM:74755482 PaxDb:Q5H9U9 PRIDE:Q5H9U9
Ensembl:ENST00000260184 Ensembl:ENST00000505890
Ensembl:ENST00000511577 GeneID:91351 KEGG:hsa:91351 UCSC:uc003irq.4
CTD:91351 GeneCards:GC04M169277 HGNC:HGNC:26429 HPA:HPA043211
neXtProt:NX_Q5H9U9 PharmGKB:PA162383445 InParanoid:Q5H9U9
OMA:AQDSVYL GenomeRNAi:91351 NextBio:77184 ArrayExpress:Q5H9U9
Bgee:Q5H9U9 CleanEx:HS_DDX60L Genevestigator:Q5H9U9 Uniprot:Q5H9U9
Length = 1706
Score = 212 (79.7 bits), Expect = 2.9e-09, Sum P(5) = 2.9e-09
Identities = 45/104 (43%), Positives = 63/104 (60%)
Query: 845 GVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDG 904
G+ YHH+ + +E+E VE + KGL+RV+TAT TLA G+++P + V+F Q + ++D
Sbjct: 1244 GIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQDSV---YLDA 1300
Query: 905 TRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPL 948
YRQM+GRAGR G D G P + KI LL S P L
Sbjct: 1301 LNYRQMSGRAGRRGQDLLGNVYFFDIP--LPKIKRLLASSVPEL 1342
Score = 54 (24.1 bits), Expect = 2.9e-09, Sum P(5) = 2.9e-09
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 579 YVSICAEKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKANSLVNRMLE 636
Y++ CA + V + L +++ + +G G + KD S+AV +++ +SL+ R E
Sbjct: 611 YLTSCASNSVKFGVEMLGLIACFKAWKKHCRGEGKISKDLSIAVQMMKRIHSLLERYPE 669
Score = 52 (23.4 bits), Expect = 4.5e-09, Sum P(5) = 4.5e-09
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 528 WQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK-MALLVLPYVSICAEK 586
WQ E L V V + + V A TS+GK++ + M + L + + + V P S+ +
Sbjct: 747 WQQELLDV--VDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPAKSLVGQV 804
Query: 587 AEHLE 591
A +E
Sbjct: 805 AATVE 809
Score = 42 (19.8 bits), Expect = 2.9e-09, Sum P(5) = 2.9e-09
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 46 KGTLDNYLKNSQDDGHTSKQSLLSRHEVVKRNLSLEIDK 84
K ++LK Q+ + L S E +K NL I K
Sbjct: 569 KSKKKSFLKEDQNKAQQNDDLLFSIEEEMKNNLHSGIRK 607
Score = 41 (19.5 bits), Expect = 2.9e-09, Sum P(5) = 2.9e-09
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 986 LLNSTKPFQDVVKSAQDSLRWLCHRK 1011
LL K F +++ DSL LC K
Sbjct: 1649 LLKCLKDFAFNIQAISDSLSELCENK 1674
Score = 41 (19.5 bits), Expect = 3.6e-09, Sum P(5) = 3.6e-09
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 428 KFKCHHDNTSRTEGISDVQEK 448
+ KCH D SR + D +K
Sbjct: 499 RIKCHVDEQSRDPHVLDFLKK 519
Score = 38 (18.4 bits), Expect = 2.9e-09, Sum P(5) = 2.9e-09
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 721 AALYETNFRPVPL--EEYIKVGNAIYSKKMD 749
A ++ET R L EE+I N I KK+D
Sbjct: 1018 AQVWETWPRAQELCPEEFILFKNKIVIKKLD 1048
>UNIPROTKB|E2RA34 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 CTD:164045
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823 RefSeq:XP_537081.3
Ensembl:ENSCAFT00000032148 GeneID:479956 KEGG:cfa:479956
Uniprot:E2RA34
Length = 1437
Score = 201 (75.8 bits), Expect = 9.7e-09, Sum P(3) = 9.7e-09
Identities = 86/301 (28%), Positives = 137/301 (45%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEY---IKVGNAIYSKKMDVVRTILT 756
++ V +SAT+PN +A+WL E + ++E +K+ + +T
Sbjct: 452 MRFVAVSATIPNAEDIAEWLSDG--ERPAVCLKMDEKHRPVKLQKVVLGFPCGSNQTEFK 509
Query: 757 A-ANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815
L K I D+ L+FC++RKG + A S+ V D+
Sbjct: 510 FDLTLNYKIAGVIRTYSDQ-----KPTLVFCATRKGVQQAA----------SVLV--KDA 552
Query: 816 EFIDITSAIDALRRCPAGL-DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874
+FI L++ + D L + L GVAYHHAG+ + +R+VVE + G + VL
Sbjct: 553 KFIMAVEQKQRLQKYAYSIRDSKLRDILIHGVAYHHAGMELSDRKVVEGAFTVGDLPVLF 612
Query: 875 ATSTLAAGVNLPARRVIFRQPR--IGRDFID--GTRYRQMAGRAGRTGIDTKGESMLICK 930
TSTLA GVNLPA V+ + G F + T QM GRAGR DT ++++ +
Sbjct: 613 TTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFDTTATAVIMTR 672
Query: 931 PEEVKKIMGLLNESCPP-LHSCLSEDKNGMTHAILEVVAGGIVQTAEDIH---RYVRCTL 986
+K + +L +C + S L H I + A ++ T D++ ++R TL
Sbjct: 673 LSTKEKYIQML--ACSDTVESSLHR------HLIEHLNAEIVLHTITDVNIALEWIRSTL 724
Query: 987 L 987
L
Sbjct: 725 L 725
Score = 46 (21.3 bits), Expect = 9.7e-09, Sum P(3) = 9.7e-09
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 1854 SICSLARISMSTQKYTLHG--HWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNE---DIY 1908
++ + S ST+K G + L +ST +L ++EP + M + +S+ D Y
Sbjct: 1278 NLLEVTSFSASTEKTKTSGFGNTLSSSTRGSKLLLQEPKSKFQGEMTKSFVSSHGKPDTY 1337
Query: 1909 GGNAEV 1914
N+ V
Sbjct: 1338 LSNSPV 1343
Score = 38 (18.4 bits), Expect = 9.7e-09, Sum P(3) = 9.7e-09
Identities = 17/83 (20%), Positives = 31/83 (37%)
Query: 194 LQSGEQTTCSNAKNIEETQSGFIVKTGNLVPNSSQRVTDSNASLLLQASL-RKCDKSSKS 252
+ GE CSN+K + + N V S R AS + +++
Sbjct: 199 MNKGESWKCSNSKQKHQYSDINMFTASNAVSASEIREDIFKGPTFSVASQPHEVQGVTEN 258
Query: 253 TLNTTACYTPEPSIVKTYVRETP 275
L++ T P+ ++ +E P
Sbjct: 259 DLDSLKAVTEIPAKFRSIFKEFP 281
>UNIPROTKB|E2R5U9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823
Ensembl:ENSCAFT00000035369 Uniprot:E2R5U9
Length = 1466
Score = 201 (75.8 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 86/301 (28%), Positives = 137/301 (45%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEY---IKVGNAIYSKKMDVVRTILT 756
++ V +SAT+PN +A+WL E + ++E +K+ + +T
Sbjct: 452 MRFVAVSATIPNAEDIAEWLSDG--ERPAVCLKMDEKHRPVKLQKVVLGFPCGSNQTEFK 509
Query: 757 A-ANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815
L K I D+ L+FC++RKG + A S+ V D+
Sbjct: 510 FDLTLNYKIAGVIRTYSDQ-----KPTLVFCATRKGVQQAA----------SVLV--KDA 552
Query: 816 EFIDITSAIDALRRCPAGL-DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874
+FI L++ + D L + L GVAYHHAG+ + +R+VVE + G + VL
Sbjct: 553 KFIMAVEQKQRLQKYAYSIRDSKLRDILIHGVAYHHAGMELSDRKVVEGAFTVGDLPVLF 612
Query: 875 ATSTLAAGVNLPARRVIFRQPR--IGRDFID--GTRYRQMAGRAGRTGIDTKGESMLICK 930
TSTLA GVNLPA V+ + G F + T QM GRAGR DT ++++ +
Sbjct: 613 TTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFDTTATAVIMTR 672
Query: 931 PEEVKKIMGLLNESCPP-LHSCLSEDKNGMTHAILEVVAGGIVQTAEDIH---RYVRCTL 986
+K + +L +C + S L H I + A ++ T D++ ++R TL
Sbjct: 673 LSTKEKYIQML--ACSDTVESSLHR------HLIEHLNAEIVLHTITDVNIALEWIRSTL 724
Query: 987 L 987
L
Sbjct: 725 L 725
Score = 46 (21.3 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 1854 SICSLARISMSTQKYTLHG--HWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNE---DIY 1908
++ + S ST+K G + L +ST +L ++EP + M + +S+ D Y
Sbjct: 1322 NLLEVTSFSASTEKTKTSGFGNTLSSSTRGSKLLLQEPKSKFQGEMTKSFVSSHGKPDTY 1381
Query: 1909 GGNAEV 1914
N+ V
Sbjct: 1382 LSNSPV 1387
Score = 38 (18.4 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 17/83 (20%), Positives = 31/83 (37%)
Query: 194 LQSGEQTTCSNAKNIEETQSGFIVKTGNLVPNSSQRVTDSNASLLLQASL-RKCDKSSKS 252
+ GE CSN+K + + N V S R AS + +++
Sbjct: 199 MNKGESWKCSNSKQKHQYSDINMFTASNAVSASEIREDIFKGPTFSVASQPHEVQGVTEN 258
Query: 253 TLNTTACYTPEPSIVKTYVRETP 275
L++ T P+ ++ +E P
Sbjct: 259 DLDSLKAVTEIPAKFRSIFKEFP 281
>WB|WBGene00016194 [details] [associations]
symbol:C28H8.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 EMBL:FO080703
eggNOG:COG4581 GeneTree:ENSGT00690000102154 PIR:A88470
RefSeq:NP_498283.1 ProteinModelPortal:Q09475 SMR:Q09475
STRING:Q09475 PaxDb:Q09475 EnsemblMetazoa:C28H8.3.1
EnsemblMetazoa:C28H8.3.2 GeneID:175834 KEGG:cel:CELE_C28H8.3
UCSC:C28H8.3.1 CTD:175834 WormBase:C28H8.3 HOGENOM:HOG000018763
InParanoid:Q09475 OMA:YARFRNK NextBio:889866 Uniprot:Q09475
Length = 1714
Score = 188 (71.2 bits), Expect = 2.2e-08, Sum P(4) = 2.2e-08
Identities = 47/110 (42%), Positives = 61/110 (55%)
Query: 837 VLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR 896
VL + G+ YHHAGL ER VE +R G + VL +TSTL+ GVN+P + V+F
Sbjct: 1273 VLLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMF---- 1328
Query: 897 IGRDFIDGTR--YRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNES 944
G D + T YRQM+GRAGR G D G + + P K+ LL S
Sbjct: 1329 -GVDTLQLTPLLYRQMSGRAGRRGFDHSGNVIFMSIP--TSKVRRLLTAS 1375
Score = 52 (23.4 bits), Expect = 2.2e-08, Sum P(4) = 2.2e-08
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 766 DHIVELCDEVVQEGH-SVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF 817
D+IV L D++ ++G + F R CE A ++ L++ + +D EF
Sbjct: 1129 DYIVTLVDDLKEKGELPAICFNDDRHVCEKLAVTLANELERRELEYMETD-EF 1180
Score = 49 (22.3 bits), Expect = 2.2e-08, Sum P(4) = 2.2e-08
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 528 WQVECLHVDGVLQRRNLVYCASTSAGKSFVA 558
WQ + L D V + + + A TSAGK+FV+
Sbjct: 788 WQRKML--DSVDRGNSALIIAPTSAGKTFVS 816
Score = 44 (20.5 bits), Expect = 2.2e-08, Sum P(4) = 2.2e-08
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 54 KNSQDDGHTSKQSLLSRHEVVKRNLSLEIDKYSKDEK 90
+ Q G K+ K++L LE +K +KD+K
Sbjct: 594 QKQQKPGAGGKKGATKESGKSKKDLILEANKKAKDQK 630
>ASPGD|ASPL0000030426 [details] [associations]
symbol:AN5514 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 EMBL:BN001305 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 eggNOG:COG1204 EMBL:AACD01000094 GO:GO:0008026
KO:K15271 OrthoDB:EOG4WWVSR RefSeq:XP_663118.1
ProteinModelPortal:Q5B1R6 EnsemblFungi:CADANIAT00003572
GeneID:2871792 KEGG:ani:AN5514.2 HOGENOM:HOG000216651
Uniprot:Q5B1R6
Length = 1385
Score = 108 (43.1 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 45/178 (25%), Positives = 80/178 (44%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAAN 759
++ V +SAT+PN +A WL + P E + G K+ + + +
Sbjct: 406 VRFVALSATIPNSEDIATWLGRNATSQHV-PAHREHF---GEEFRPVKL---QKFVYGYH 458
Query: 760 LGGKDPDHIVELCDEVVQEGHS----VLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815
G + +L + + HS ++IFCS+R STA+ +++ + S S
Sbjct: 459 FSGNN-FAFDKLLNSNIIGTHSAKKPIMIFCSTRNSTVSTAKELAR--------LWSMSS 509
Query: 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVL 873
+ + + + P L+ T +GVA+HHAGL E+R +VE Y +G + V+
Sbjct: 510 RLVRMWKGPN--KPLPVK-HADLKVTTAAGVAFHHAGLETEDRHLVENGYLQGKISVI 564
Score = 96 (38.9 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 37/138 (26%), Positives = 62/138 (44%)
Query: 529 QVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRL-ISTGKMALLVL--PYVSICAE 585
Q +C H N+V A T +GK+ V E+ + R L I K +V P S+C+E
Sbjct: 254 QSKCFHAI-YKSDDNVVIAAPTGSGKTVVMELAICRLLNIRKDKKFKVVYQAPTKSLCSE 312
Query: 586 KAEHLEVLLEPLGRHVRSYYGNQGGGSLP--KDTSVAVCTIEKANSLVNRMLEEGRLSE- 642
+ LG G+ L ++ + V T EK +S+ + + RL +
Sbjct: 313 RFRDWNQKFHALGLQCAELTGDTDHSQLGNVQNRQIIVTTPEKWDSMTRKWKDHIRLMQP 372
Query: 643 IGIIVIDELHMVADQNRG 660
+ + +IDE+H + + RG
Sbjct: 373 VKLFLIDEVHTLKEA-RG 389
Score = 68 (29.0 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 38/146 (26%), Positives = 61/146 (41%)
Query: 898 GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKN 957
G+++ D QM GRAGR D ++++ + E V L++ S + S L N
Sbjct: 569 GQEYSD-LEVMQMLGRAGRPQFDDSATAVILTRKERVSHYERLVSGS-ESVESSLH--LN 624
Query: 958 GMTHAILEVVAGGIVQTAEDIHRYVRCTLLN---STKPFQDVVKSA------QDSLRWLC 1008
+ H E+ G I T E ++ T L+ P +K + LR +C
Sbjct: 625 LIEHLNAEIGLGNIKST-ESAASWLAGTFLSVRLRRNPTHYRLKEGANRNDTNEMLRHIC 683
Query: 1009 HR--KFLEWNE--DTKLYSTTPLGRA 1030
+ K L+ DT+ +TP G A
Sbjct: 684 EKDIKLLQEYALVDTESLKSTPFGYA 709
Score = 46 (21.3 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 20/86 (23%), Positives = 35/86 (40%)
Query: 1401 EGGSITELQQKFDAENXXXXXXXXXXXXXEFNVNASEIKIPDTTLSVQLGKNAIGTITSN 1460
EG S K ++N N+ K T ++ Q KN++G ++SN
Sbjct: 1169 EGLSSPPKVTKKKSDNAHSEAAEFSQSRLTGNIAKKGTKPMVTDIAKQPCKNSLGLLSSN 1228
Query: 1461 RDLDLEV-------QDRPNRDPCLVN 1479
+ L ++ ++ PN DP V+
Sbjct: 1229 QALIQQLRRSKVMGEENPNPDPPTVD 1254
>TAIR|locus:2036361 [details] [associations]
symbol:POLGAMMA2 "polymerase gamma 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS;TAS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0006264
"mitochondrial DNA replication" evidence=IMP] [GO:0033259 "plastid
DNA replication" evidence=IMP] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002562 InterPro:IPR012337
Pfam:PF00476 Pfam:PF01612 PRINTS:PR00868 SMART:SM00474
SMART:SM00482 EMBL:CP002684 GO:GO:0005739 GO:GO:0009507
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887
GO:GO:0006264 KO:K02335 IPI:IPI00545616 RefSeq:NP_175498.2
UniGene:At.28263 UniGene:At.65769 ProteinModelPortal:F4I6M1
SMR:F4I6M1 PRIDE:F4I6M1 EnsemblPlants:AT1G50840.1 GeneID:841506
KEGG:ath:AT1G50840 OMA:ISMKTIF GO:GO:0033259 Uniprot:F4I6M1
Length = 1050
Score = 144 (55.7 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 39/118 (33%), Positives = 59/118 (50%)
Query: 1980 EDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVA 2039
+D+ GS ER + K L + I YG LS S+ EA+E + + + V W +
Sbjct: 867 KDAFGS-ERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQEMR 925
Query: 2040 VSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINI 2097
+ GYV +L GR R K + +++ QR A+N+ QGSAAD+ AM+ I
Sbjct: 926 KKEAIEDGYVLTLLGRSRRFPASK--SRAQRNHIQRAAINTPVQGSAADVAMCAMLEI 981
Score = 77 (32.2 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 32/122 (26%), Positives = 51/122 (41%)
Query: 1852 LGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGN 1911
+ S+C + I + L LQ S +G+ +L ++
Sbjct: 718 IASLCEVCSIDSLISNFILP---LQGSNVSGKDGRVHCSLNINTETGRLSARRPNLQNQP 774
Query: 1912 A-EVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTM 1970
A E D KI R F+ S N L+ ADY Q+ELR++AH + +++ K GD +
Sbjct: 775 ALEKDRYKI--RKAFVASPGN-TLVVADYGQLELRILAHLTGCKSMMEAF-KAGGDFHSR 830
Query: 1971 IA 1972
A
Sbjct: 831 TA 832
Score = 42 (19.8 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 799 VSKFLKKFSINVHSSDSE 816
V+K + +F +VHS D+E
Sbjct: 279 VAKLVNQFRNHVHSCDTE 296
Score = 39 (18.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 1266 IVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEK 1303
+++ L SSSW++ + R+ R+ +L++
Sbjct: 14 LLRHLSPSSSWVSRSSSRLSSSPLPSFLFPCRRTLLQR 51
Score = 38 (18.4 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 1077 DWELYYE-RFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRD 1123
+WEL E + + VGNQ V+E + + A ++KLR+
Sbjct: 87 EWELRSESNKVRMVPKIIKVGNQTEVAETHQVPGTVSAWREEANKLRE 134
Score = 37 (18.1 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 76 RNLSLEIDKYSKDEKNQALLSDQAQ 100
RN +EI + D + A L D A+
Sbjct: 373 RNHGIEISGFHADTMHMARLWDSAR 397
>UNIPROTKB|B4E0P5 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001650
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0030529 GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC021188 UniGene:Hs.246112
HGNC:HGNC:30859 ChiTaRS:SNRNP200 EMBL:AK303465 IPI:IPI00927472
SMR:B4E0P5 STRING:B4E0P5 Ensembl:ENST00000429650
HOGENOM:HOG000031250 HOVERGEN:HBG078981 Uniprot:B4E0P5
Length = 595
Score = 158 (60.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 75/295 (25%), Positives = 126/295 (42%)
Query: 700 LQIVGMSATMPNVAAVADWLQAALYET-NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758
++IV +S+++ N VA WL + T NF P V ++ + ++ T
Sbjct: 12 IRIVALSSSLSNAKDVAHWLGCSATSTFNFHP----NVRPVPLELHIQGFNISHTQTRLL 67
Query: 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFI 818
++ K H + V++F SRK TA + L + ++ F+
Sbjct: 68 SMA-KPVYHAITKHSPK----KPVIVFVPSRKQTRLTAIDI---LTTCAADIQRQ--RFL 117
Query: 819 DITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878
T D + D L+ETL +GV Y H GL+ ER +VE + G ++V+ A+ +
Sbjct: 118 HCTEK-DLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRS 176
Query: 879 LAAGVNLPARRVIFRQPRI--GR--DFIDGTRYR--QMAGRAGRTGIDTKGESMLICKPE 932
L G+N+ A VI + G+ ++D Y QM G A R D +G +++C+
Sbjct: 177 LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 236
Query: 933 EVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
+ L E P + S L + H E+V I + +D Y+ T L
Sbjct: 237 KKDFFKKFLYEPLP-VESHLDHCMHD--HFNAEIVTKTI-ENKQDAVDYLTWTFL 287
Score = 43 (20.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 14/65 (21%), Positives = 33/65 (50%)
Query: 2127 LQVHDELVLEVDPSVIKEAVSLVQKCME--SAALLLVPLLVKIQVGSTWGSLEPFQADNY 2184
+Q+ EL + + ++ +A+ L+Q C++ S+ L P L +++ + + D+Y
Sbjct: 429 MQLSAELQSDTE-EILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMV-TQAMWSKDSY 486
Query: 2185 TNVVP 2189
+P
Sbjct: 487 LKQLP 491
Score = 38 (18.4 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 1106 LMRMAHGAPMRISSKLRDSTKGLHGK 1131
L+ AH + M++S++L+ T+ + K
Sbjct: 420 LLLQAHLSRMQLSAELQSDTEEILSK 445
>POMBASE|SPAC694.02 [details] [associations]
symbol:SPAC694.02 "DEAD/DEAH box helicase" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC694.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:T50247 RefSeq:NP_594482.1
ProteinModelPortal:Q9P7T8 PRIDE:Q9P7T8 EnsemblFungi:SPAC694.02.1
GeneID:2543333 KEGG:spo:SPAC694.02 HOGENOM:HOG000194492 OMA:HTRDYRI
OrthoDB:EOG4S4SQ7 NextBio:20804349 Uniprot:Q9P7T8
Length = 1717
Score = 164 (62.8 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 43/119 (36%), Positives = 64/119 (53%)
Query: 824 IDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGV 883
++ALRR A + + L G+ HH+GL R++VE +R G + V+ AT TL+ G+
Sbjct: 1204 LEALRRRQA-VPEWYVDALYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGI 1262
Query: 884 NLPARRVIFRQPRIGRDF-IDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLL 941
N+P R V+F +G ++ + Q AGRAGR G D G + P + KI LL
Sbjct: 1263 NMPCRTVVF----LGDSLQLNALNFHQAAGRAGRRGFDLLGHVGFLGVP--LHKIYRLL 1315
Score = 59 (25.8 bits), Expect = 6.4e-05, Sum P(5) = 6.4e-05
Identities = 33/140 (23%), Positives = 56/140 (40%)
Query: 528 WQVECLHVDGVLQRRNLVYC-ASTSAGKSFVAEILMLRRLISTGK-MALLVLPYVSICAE 585
WQ E L + L R V+ A TS+GK+F++ M + L + + V P ++ +
Sbjct: 739 WQRETLDI---LDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALVNQ 795
Query: 586 KAEHLEVLLE---P-LGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANS-LVNRMLEEGRL 640
+ + P G+ V S Y + P + V + S L+ L
Sbjct: 796 LSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALANAWC 855
Query: 641 SEIGIIVIDELHMVADQNRG 660
+I I+ DE+H + G
Sbjct: 856 PKIRRIIFDEIHCIGQMEDG 875
Score = 45 (20.9 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 785 FCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPA 832
F S + E+ + +S +LKKF S E DI A+DA CP+
Sbjct: 199 FTRSSESVENASNLISDYLKKFGKPRQSI--ELPDI--AVDA---CPS 239
Score = 42 (19.8 bits), Expect = 6.4e-05, Sum P(5) = 6.4e-05
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 702 IVGMSATMPNVAAVADWLQAALYETNFRPVPL 733
IV +SAT+ N WL +AL + P+ L
Sbjct: 889 IVALSATVGNPQEFQVWL-SALQRAHSYPIHL 919
Score = 40 (19.1 bits), Expect = 6.4e-05, Sum P(5) = 6.4e-05
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 434 DNTSRTEGISDVQEKDSVLIVHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEA 490
DNT + + V+ +D I H +K S G T + P ++S +A
Sbjct: 456 DNTKDRKQANKVRRQDQFFISHIQKYASSLTGAKGGQLKRQTIFTQGPNSTKESKQA 512
Score = 38 (18.4 bits), Expect = 6.4e-05, Sum P(5) = 6.4e-05
Identities = 22/85 (25%), Positives = 33/85 (38%)
Query: 180 DNKIAKKKYCVSNLLQSGEQTTCSNAKNIEETQSGFIVKTGNL-----VPNSSQRVTDSN 234
DNKI C+ + + NA N+ S ++ K G +P+ + SN
Sbjct: 187 DNKIL---VCILPSFFTRSSESVENASNLI---SDYLKKFGKPRQSIELPDIAVDACPSN 240
Query: 235 ASLLLQASLRKCDKSSKSTLNTTAC 259
AS + S + KS LN C
Sbjct: 241 ASRIQTLSAAWLLLNEKSDLNVDLC 265
>UNIPROTKB|F1P0I1 [details] [associations]
symbol:F1P0I1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:QDCTYAD GeneTree:ENSGT00690000102154 EMBL:AADN02016399
IPI:IPI00595626 Ensembl:ENSGALT00000015699 Uniprot:F1P0I1
Length = 1313
Score = 168 (64.2 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 31/74 (41%), Positives = 49/74 (66%)
Query: 838 LEETLPS-GVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR 896
+ +TL G+ YHH + ++ER+ VE +R G ++V+TATSTLA G+N+P R V+F +
Sbjct: 1241 VHQTLARRGIGYHHGAMAMKERQTVEMLFRLGYIKVVTATSTLALGINMPCRSVVFAEDS 1300
Query: 897 IGRDFIDGTRYRQM 910
+ F+D YRQ+
Sbjct: 1301 V---FLDALNYRQV 1311
Score = 50 (22.7 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 528 WQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRL-ISTGKMALLVLP 578
WQ E L D V + V A TS+GK++ + M + L +S + + V P
Sbjct: 746 WQRELL--DAVDNNESAVIVAPTSSGKTYASYYCMEKVLKMSDEGVVVYVAP 795
Score = 43 (20.2 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 734 EEYIKVGNAIYSKKMDV 750
EE++ N I KKMDV
Sbjct: 1033 EEFVSFKNNIVIKKMDV 1049
Score = 42 (19.8 bits), Expect = 6.0e-05, Sum P(4) = 6.0e-05
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 611 GSLPKDTSVAVCTIEKANSLVNR---MLEEGRLSEI 643
G+ PKD S AV + + + L+ + +LE+ L ++
Sbjct: 641 GNKPKDLSSAVQLMRRIHILLEKYQDLLEKSHLQKL 676
Score = 40 (19.1 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 703 VGMSATMPNVAAVADWLQA 721
+ +SAT+ N + +WLQ+
Sbjct: 894 LALSATISNPDHLTEWLQS 912
Score = 38 (18.4 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 738 KVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEV 775
++G ++ + +R A + +PDH+ E V
Sbjct: 876 EIGAEVWEHLLVTIRCPFLALSATISNPDHLTEWLQSV 913
>UNIPROTKB|F1SU36 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GeneTree:ENSGT00640000091272 EMBL:CU896688
Ensembl:ENSSSCT00000008906 OMA:QSSKKEF Uniprot:F1SU36
Length = 553
Score = 147 (56.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 49/159 (30%), Positives = 77/159 (48%)
Query: 835 DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894
D L+ETL +GV Y H GL+ ER +VE + G ++V+ A+ +L G+N+ A VI
Sbjct: 23 DSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMD 82
Query: 895 PRI--GR--DFIDGTRYR--QMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPL 948
+ G+ ++D Y QM GRA R D +G +++C+ + L E P +
Sbjct: 83 TQYYNGKIHAYVDYPIYDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLP-V 141
Query: 949 HSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987
S L + H E+V I + +D Y+ T L
Sbjct: 142 ESHLDHCMHD--HFNAEIVTKTI-ENKQDAVDYLTWTFL 177
Score = 43 (20.2 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 14/65 (21%), Positives = 33/65 (50%)
Query: 2127 LQVHDELVLEVDPSVIKEAVSLVQKCME--SAALLLVPLLVKIQVGSTWGSLEPFQADNY 2184
+Q+ EL + + ++ +A+ L+Q C++ S+ L P L +++ + + D+Y
Sbjct: 319 MQLSAELQSDTE-EILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMV-TQAMWSKDSY 376
Query: 2185 TNVVP 2189
+P
Sbjct: 377 LKQLP 381
Score = 38 (18.4 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 1106 LMRMAHGAPMRISSKLRDSTKGLHGK 1131
L+ AH + M++S++L+ T+ + K
Sbjct: 310 LLLQAHLSRMQLSAELQSDTEEILSK 335
>UNIPROTKB|P52126 [details] [associations]
symbol:yfjK "CP4-57 prophage; conserved protein"
species:83333 "Escherichia coli K-12" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003676
EMBL:U36840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 GO:GO:0008026 PIR:T08639 RefSeq:NP_417116.1
RefSeq:YP_490848.1 ProteinModelPortal:P52126 SMR:P52126
DIP:DIP-12076N IntAct:P52126 MINT:MINT-1230544
EnsemblBacteria:EBESCT00000004366 EnsemblBacteria:EBESCT00000018403
GeneID:12931629 GeneID:947111 KEGG:ecj:Y75_p2573 KEGG:eco:b2627
PATRIC:32120647 EchoBASE:EB2989 EcoGene:EG13197
HOGENOM:HOG000036311 OMA:KNISGRA ProtClustDB:CLSK891780
BioCyc:EcoCyc:G7362-MONOMER BioCyc:ECOL316407:JW2608-MONOMER
Genevestigator:P52126 Uniprot:P52126
Length = 729
Score = 106 (42.4 bits), Expect = 0.00011, Sum P(2) = 0.00010
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 842 LPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDF 901
L +G+ H L ++ + G +R L TST+ GVN A+ V+ R G
Sbjct: 357 LRNGIGLHFGALPRALQQYTADQFNAGKLRFLLCTSTIIEGVNTIAKNVVIYDNRDGTRS 416
Query: 902 IDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932
ID + + GRAGR G+ G+ + C E
Sbjct: 417 IDKFTHGNIKGRAGRMGVHFVGK--IFCLEE 445
Score = 83 (34.3 bits), Expect = 0.00011, Sum P(2) = 0.00010
Identities = 42/156 (26%), Positives = 74/156 (47%)
Query: 504 DLSSWLPSE--ICSIYKKRGISKLYPWQVECLHVDGVLQR-RNLVYCASTSAGKSFVAEI 560
+ +S P + + +Y+ S Y + H+ +L+ +N+V A TS GKS + +
Sbjct: 76 EFTSLTPDDLRVLELYRTP-FSDGYVFHSMQFHIFDLLKSGQNVVLSAPTSMGKSAIVDS 134
Query: 561 LMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG-RHVRSYYGNQGGGSLPKDTSV 619
L+ + T K +LV+P V++ E L+ E G R+ ++ +Q S D +V
Sbjct: 135 LLG---MGTLKRLVLVVPTVALADETRRRLQ---ERFGDRYQIIHHSSQVCHS---DQAV 185
Query: 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655
V T E+ N E + +I + VIDE + +A
Sbjct: 186 YVLTQERVN-------ERDDIVDIDLFVIDEFYKLA 214
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 93 (37.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 39/137 (28%), Positives = 59/137 (43%)
Query: 459 LDISSQGIDSITSDSPTNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSWLPSEICSIYK 518
++I SQ +DS + P N SD + G L L+ W E C K
Sbjct: 26 VNIQSQKLDSDQNTPQFEKFTNP--NPSSDTTSATNFEG-----LGLAEWAV-ETC---K 74
Query: 519 KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLV 576
+ G+ K P Q C V +L R+++ A T +GK+ + +L RL G AL+V
Sbjct: 75 ELGMRKPTPVQTHC--VPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVV 132
Query: 577 LPYVSICAEKAEHLEVL 593
P + + AE + L
Sbjct: 133 TPTRELAFQLAEQFKAL 149
Score = 88 (36.0 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 40/167 (23%), Positives = 70/167 (41%)
Query: 824 IDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGV 883
+ R C L +L+E +A H + R + ++ G V +L AT + G+
Sbjct: 309 VSTCRTCQR-LSLMLDELEVENIAMHSLN-SQSMRLSALSKFKSGKVPILLATDVASRGL 366
Query: 884 NLPARRVIFRQ--PRIGRDFIDGTRYRQMAGRAG-RTGIDTKGESMLICK-PEEVKKIMG 939
++P ++ PR RD++ AGR G I T+ + LI K EEV K M
Sbjct: 367 DIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKME 426
Query: 940 LLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTL 986
N+ +++ A+++++ G +D + R TL
Sbjct: 427 PYNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKRKTL 473
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 100 (40.3 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 64/265 (24%), Positives = 111/265 (41%)
Query: 723 LYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSV 782
+++ F P + +KV N I K +T+L +A P H+ L +V+ + +
Sbjct: 466 MFDKGFEP----QIMKVVNNIRPDK----QTVLFSATF----PRHMEALARKVLDKPVEI 513
Query: 783 LI-----FCSS-RKGCESTARHVSKFLKKFSI-NVHSSDSEFIDITSAIDALRRCPAGLD 835
L+ CS + A H KFLK + ++ + I +D + +D
Sbjct: 514 LVGGKSVVCSDITQNAVICAEH-QKFLKLLELLGMYYEEGSSIVF---VDKQEKADDIVD 569
Query: 836 PVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ- 894
++ T + VA H G+ +R+ ++ G+++VL ATS A G+++ ++
Sbjct: 570 QLMR-TGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYD 628
Query: 895 -PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLL-----NESC-PP 947
P D++ +R GR GR G KG + PE +K+ G + C PP
Sbjct: 629 CPNHYEDYV----HR--VGRTGRAG--RKGYAYTFVLPEHQEKMAGEICRAFETAGCKPP 680
Query: 948 --LHSCLSEDKNGMTHAILEVVAGG 970
L + K+ M EV GG
Sbjct: 681 ADLKAMFERFKSEMAAEGKEVKLGG 705
Score = 86 (35.3 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 32/158 (20%), Positives = 67/158 (42%)
Query: 512 EICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-- 569
++ ++ KK SK P ++ + ++ R+++ A T +GK+ + M R ++
Sbjct: 314 KMMNVLKKFEYSK--PTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPE 371
Query: 570 -----GKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVA 620
G +A+++ P + + + +PLG V YG G L + +
Sbjct: 372 LEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIV 431
Query: 621 VCTIEKA-NSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657
VCT + + L + L + +V+DE + D+
Sbjct: 432 VCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDK 469
>UNIPROTKB|H9L1I7 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AADN02044729 EMBL:AADN02044730
Ensembl:ENSGALT00000035545 OMA:PRKERIM Uniprot:H9L1I7
Length = 771
Score = 95 (38.5 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 36/132 (27%), Positives = 62/132 (46%)
Query: 543 NLVYCASTSAGKSFVAEILMLRRL---------ISTGKMALL-VLPYVSICAEKAEHLEV 592
NL+ CA T AGK+ VA + MLR + I+ + ++ + P S+ E
Sbjct: 498 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDEFKIIYIAPMRSLVQEMVGSFGK 557
Query: 593 LLEPLGRHVRSYYGNQGGGSLPKD----TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVI 648
L G +V G+ L K+ T + VCT EK + + + E + ++++
Sbjct: 558 RLATYGINVAELTGDH---QLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLVIL 614
Query: 649 DELHMVADQNRG 660
DE+H++ D +RG
Sbjct: 615 DEIHLLHD-DRG 625
Score = 88 (36.0 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 700 LQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEE-YIKVGNAIYSKKMDVVR 752
+++VG+SAT+PN VA +L+ ++ +FRPVPLE+ Y+ + K+ ++
Sbjct: 646 VRLVGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMN 705
Query: 753 TILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV 799
I+ + I+E + + VL+F SRK TAR +
Sbjct: 706 EIVY---------EKIMEHAGK-----NQVLVFVHSRKETGKTARAI 738
>SGD|S000004802 [details] [associations]
symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
DNA double-strand break processing" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010520
"regulation of reciprocal meiotic recombination" evidence=IGI]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IGI] [GO:0000729 "DNA double-strand break processing"
evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
Length = 1447
Score = 98 (39.6 bits), Expect = 0.00072, Sum P(5) = 0.00071
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 847 AYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVI--FRQPRIGRDFIDG 904
AY+HAG+ +ER V+ ++ ++V+ AT G++ P R + F PR ++G
Sbjct: 928 AYYHAGMEPDERLSVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRT----LEG 983
Query: 905 TRYRQMAGRAGRTG 918
Y Q GRAGR G
Sbjct: 984 --YYQETGRAGRDG 995
Score = 89 (36.4 bits), Expect = 0.00072, Sum P(5) = 0.00071
Identities = 59/251 (23%), Positives = 113/251 (45%)
Query: 434 DNTSRTEGISDVQEKDSVL-IVHERKLDISSQGIDSITSDSPTNVIKKPVGNEKSDEAGT 492
+ +RT+ ++D+QE D+ L I+ ERKL ++ S SP +K ++K DE
Sbjct: 580 ERENRTQ-VADIQELDNDLKIITERKLTGDNE--HPPPSWSPKIKREKSSVSQK-DEEDD 635
Query: 493 PSSSGMLKDCL---DLSSWL--PSEICS---IYKKRGISKL---YPWQVECLHVDGVLQR 541
L D + +LSS P+ S +Y+ + KL P Q+E V+ LQ
Sbjct: 636 FDDDFSLSDIVSKSNLSSKTNGPTYPWSDEVLYRLHEVFKLPGFRPNQLEA--VNATLQG 693
Query: 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601
+++ T GKS ++ + + T +++ P +S+ ++ EHL L +++
Sbjct: 694 KDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTIVISPLISLMQDQVEHL------LNKNI 747
Query: 602 R-SYYGNQGGGSLPKDT---------------SVAVCTIEKANSLVNRMLEEGRLSEIGI 645
+ S + ++G + T + E+ ++R+ +G+L+ I
Sbjct: 748 KASMFSSRGTAEQRRQTFNLFINGLLDLVYISPEMISASEQCKRAISRLYADGKLARI-- 805
Query: 646 IVIDELHMVAD 656
V+DE H V++
Sbjct: 806 -VVDEAHCVSN 815
Score = 66 (28.3 bits), Expect = 0.00072, Sum P(5) = 0.00071
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 763 KDPDHIVELCDEVVQ--EGHSVLIFCSSRKGCESTARHVSK 801
K + I E+CD V + + +I+C S+K CE T+ + +
Sbjct: 882 KTKNTIFEICDAVKSRFKNQTGIIYCHSKKSCEQTSAQMQR 922
Score = 40 (19.1 bits), Expect = 0.00072, Sum P(5) = 0.00071
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 1802 HLKLPIPEGHNKGKQHPSTDKHCLDL 1827
HL+ G G HP T K+ DL
Sbjct: 1241 HLRSYTYGGSTMGSSHPITLKNTSDL 1266
Score = 37 (18.1 bits), Expect = 0.00072, Sum P(5) = 0.00071
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 430 KCHHDNTSRTEGISDVQEKDS 450
K H+ NT R S + E DS
Sbjct: 127 KTHNFNTFRPHMASSLVENDS 147
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 2191 2094 0.00087 126 3 11 22 0.41 34
41 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 178
No. of states in DFA: 636 (68 KB)
Total size of DFA: 803 KB (2338 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 178.95u 0.08s 179.03t Elapsed: 00:00:08
Total cpu time: 179.03u 0.08s 179.11t Elapsed: 00:00:08
Start: Thu May 9 23:14:03 2013 End: Thu May 9 23:14:11 2013
WARNINGS ISSUED: 1