BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000107
(2191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 593 bits (1530), Expect = e-168, Method: Compositional matrix adjust.
Identities = 324/809 (40%), Positives = 477/809 (58%), Gaps = 73/809 (9%)
Query: 493 PSSSGMLKDCLDLSSW-LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTS 551
P+ +D L L++W LP + Y G+ K++ WQ ECL + VL+ +NLVY A TS
Sbjct: 59 PTVPDYERDKLLLANWGLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTS 118
Query: 552 AGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG 611
AGK+ VAE+L+L+R++ K AL +LP+VS+ EK +L+ L + +G V Y G+
Sbjct: 119 AGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPS 178
Query: 612 SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLR 671
+AVCTIE+AN L+NR++EE ++ +G++V+DELHM+ D +RGYLLELLLTK+
Sbjct: 179 RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKIC 238
Query: 672 YAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPV 731
Y T S+S + SS ++ +QIVGMSAT+PN+ VA WL A LY T+FRPV
Sbjct: 239 YI----TRKSASCQADLASS----LSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPV 290
Query: 732 PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKG 791
PL E +KVGN+IY M +VR + G D DH+V LC E + + HSVL+FC S+K
Sbjct: 291 PLLESVKVGNSIYDSSMKLVREFEPMLQVKG-DEDHVVSLCYETICDNHSVLLFCPSKKW 349
Query: 792 CESTARHVSKFLKKFSINVHSSDSEFI-------------DITSAIDALRRCPAGLDPVL 838
CE A +++ N+H + ++ +D LRR P+GLD VL
Sbjct: 350 CEKLADIIAREF----YNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVL 405
Query: 839 EETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIG 898
++T+P GVA+HHAGLT EER+++E +R+GL+RVL ATSTL++GVNLPARRVI R P G
Sbjct: 406 QKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFG 465
Query: 899 RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLS----- 953
+D Y+QM GRAGR G+DT GES+LICK E K + LL S P+ SCL
Sbjct: 466 GRPLDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGE 525
Query: 954 EDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL-NSTKPFQDVVKSAQDSLR------- 1005
E M AILE++ GG+ T++D+H Y CT L S K + ++ Q+S++
Sbjct: 526 EVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEAC 585
Query: 1006 --WLCHRKFLEWNE-----DTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLA 1058
WL +F++ E + K+Y T LG A SSL P ++L + DL RA +GFVL
Sbjct: 586 VMWLLENEFIQSTEASDGTEGKVYHPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLE 645
Query: 1059 SDLHLVYLSTPINVE-VEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRI 1117
+DLH++YL TP+ + DW ++ + +L + V VGV E +L R G
Sbjct: 646 NDLHILYLVTPMFEDWTTIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKG----- 700
Query: 1118 SSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCET 1177
K+ T+ H + + + KRF+ +L+L L+ E P+ E+ +
Sbjct: 701 --KVVARTERQH------------------RQMAIHKRFFTSLVLLDLISEVPLREINQK 740
Query: 1178 FKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIP 1237
+ RG +Q+LQ++A +A M++VF RLGW+++E L+++FQ R++FG++ E+ +L +
Sbjct: 741 YGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLVRVS 800
Query: 1238 YVKGSRARALYKAGLRTPLAIAEASISEI 1266
+ RAR LY +G T +A A+I E+
Sbjct: 801 LLNAQRARVLYASGFHTVADLARANIVEV 829
Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 185/543 (34%), Positives = 265/543 (48%), Gaps = 105/543 (19%)
Query: 1725 LLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAG 1784
LL E L + +E+P LA +EL GIG C ++++Q KL +E +AY LAG
Sbjct: 2063 LLQKENLQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAG 2122
Query: 1785 MKFSLYTAADIANVLYGHLKLPIP--EGHNKGKQHP--------------------STDK 1822
FS ++ DIA VL+ LKLP P E N+G + ST K
Sbjct: 2123 HSFSFTSSDDIAEVLFLELKLP-PNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSK 2181
Query: 1823 HCLDLLRHEHPIVPVIKEHRTLA-------------KLLNCTLGSICSLARISMSTQKYT 1869
L+ L+ HP+ +I E R + K LN LG + RI +Q +T
Sbjct: 2182 DVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLG----MERIYPVSQSHT 2237
Query: 1870 LHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSN-------------------EDIYGG 1910
ATGR++ EPN+Q V E KM Y
Sbjct: 2238 ----------ATGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKK 2287
Query: 1911 NAEVD-HCK---------------INARDFFIPSQENWILLAADYSQIELRLMAHFSKDP 1954
V+ C+ I+ R F+P IL AADYSQ+ELR++AH S D
Sbjct: 2288 GFSVNPRCQAQMEERAADRGMPFSISMRHAFVPFPGGSIL-AADYSQLELRILAHLSHDR 2346
Query: 1955 ALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCS 2014
LI +L+ DVF IAA W +SVG R Q K++ YGI+YGMG +L EQ+
Sbjct: 2347 RLIQVLNT-GADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIK 2405
Query: 2015 SNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQ 2074
N+A I SFKS + G+ ++ V +C + G+V+++ GR+R+L IK N K+ A+
Sbjct: 2406 ENDAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAE 2465
Query: 2075 RQAVNSICQGSAADIIKIAMINI-------HSIIVG-----GVYKPDSSLAANFQMLKGR 2122
RQA+N+I QGSAADI+KIA +NI HS G+ + D + + + L+G
Sbjct: 2466 RQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRKLQGM 2525
Query: 2123 -CRL-----LLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSL 2176
C + +LQ+HDEL+ EV + + +V+ MESA L V L VK+++G++WG L
Sbjct: 2526 FCPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVKLSVKLKVKVKIGASWGEL 2585
Query: 2177 EPF 2179
+ F
Sbjct: 2586 KDF 2588
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust.
Identities = 288/828 (34%), Positives = 443/828 (53%), Gaps = 103/828 (12%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LPS++ +Y + +GI KLY WQ CL ++ V +R+NL+Y TS GK+ VAEILML+ L+
Sbjct: 319 LPSKVRDLYAQFKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELL 378
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK---DTSVAVCTI 624
K L++LPYV+I EK L LG V Y G++G K S+ + TI
Sbjct: 379 CCRKDVLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATI 438
Query: 625 EKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSG 684
EK +SLVN ++E GR+ +G++V+DELHM+ + +RG LE+ L K+ Y TS ++
Sbjct: 439 EKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILY-----TSKTT-- 491
Query: 685 ENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIY 744
QI+GMSAT+ NV + +LQA Y + FRPV L+EY+K+ + IY
Sbjct: 492 ----------------QIIGMSATLNNVEDLQKFLQAEYYTSQFRPVELKEYLKINDTIY 535
Query: 745 S------KKMDVVRTI--LTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTA 796
M R + + L DPDH+V L EV+ +S L+FC S+K CE+ A
Sbjct: 536 EVDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIP-NYSCLVFCPSKKNCENVA 594
Query: 797 RHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAG-LDPVLEETLPSGVAYHHAGLTV 855
+ KFL K + + I L+ G L PVL+ T+P GVAYHH+GLT
Sbjct: 595 EMICKFLSKEYLKHKEKEK-----CEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTS 649
Query: 856 EEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAG 915
+ER+++E Y G++ + T TSTLAAGVNLPARRVI R P + ++F+ +Y+QM GRAG
Sbjct: 650 DERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAG 709
Query: 916 RTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLS----EDKNGMTHAILEVVAGGI 971
R GIDT GES+LI + ++ ++++ L+ + PL +C S E G+ L ++ I
Sbjct: 710 RAGIDTIGESILILQEKDKQQVLELITK---PLENCYSHLVQEFTKGIQTLFLSLIGLKI 766
Query: 972 VQTAEDIHRYVRCTLLNSTKPFQDVVKS----AQDSLRWLCHRKFLEWN------EDTKL 1021
+DI+ ++ T + KS +SLR+L + L+ + E+ +
Sbjct: 767 ATNLDDIYHFMNGTFFGVQQKVLLKEKSLWEITVESLRYLTEKGLLQKDTIYKSEEEVQY 826
Query: 1022 -YSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINV--EVEPDW 1078
+ T LGRA+F ++ I+ DL + EG VL S LHL+YL+TP ++ + PDW
Sbjct: 827 NFHITKLGRASFKGTIDLAYCDILYRDLKKGLEGLVLESLLHLIYLTTPYDLVSQCNPDW 886
Query: 1079 ELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGI 1138
+Y+ +F +LS +Q+V +GVSE ++ + A G + GK +
Sbjct: 887 MIYFRQFSQLSPAEQNVAAILGVSESFIGKKASGQAI--------------GK-----KV 927
Query: 1139 TSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASM 1198
N V R Y++ +L L++ET + V E F + RG +Q L F+S
Sbjct: 928 DKN----------VVNRLYLSFVLYTLLKETNIWTVSEKFNMPRGYIQNLLTGTASFSSC 977
Query: 1199 VSVFCERL-GWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLA 1257
V FCE L ++ L+ + ++++ V+AE++ L + V RA+ LY AG ++ +
Sbjct: 978 VLHFCEELEEFWVYRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYSAGYKSLMH 1037
Query: 1258 IAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAE 1305
+A A+ +V+ I RR AK+I + A+ ++ EKAE
Sbjct: 1038 LANANPEVLVRT-------IDHLSRR----QAKQIVSSAKMLLHEKAE 1074
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 291/829 (35%), Positives = 446/829 (53%), Gaps = 106/829 (12%)
Query: 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI 567
LPS++ +Y + +GI KLY WQ CL + V +R+NL+Y TS GK+ VAEILML+ L+
Sbjct: 278 LPSKVRDLYVQLKGIKKLYDWQHTCLTLRSVQERKNLIYSLPTSGGKTLVAEILMLQELL 337
Query: 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP-----KDTSVAVC 622
K L++LPYV+I EK L LG V Y G++G P + S+ +
Sbjct: 338 CRQKDVLMILPYVAIVQEKISSLSSFGIELGFFVEEYAGSKG--RFPPIKRREKKSLYIA 395
Query: 623 TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSS 682
TIEKA+SLVN ++E RLS +G++V+DELHM+ + +RG +LE+ L K+ Y TS ++
Sbjct: 396 TIEKAHSLVNALIETSRLSTLGLVVVDELHMIGEGSRGAILEMTLAKVLY-----TSKTT 450
Query: 683 SGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNA 742
QI+GMSAT+ NV + +L+A Y + FRPV L+E++KV +
Sbjct: 451 ------------------QIIGMSATLNNVEDLQAFLKAEYYTSQFRPVELKEFLKVNDT 492
Query: 743 IY------SKKMDVVRTI--LTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCES 794
IY + M R + + L DPD +V L EV+ +S L+FC S+K CE+
Sbjct: 493 IYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALVTEVIP-NYSCLVFCPSKKNCEN 551
Query: 795 TARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAG-LDPVLEETLPSGVAYHHAGL 853
A + KFL K +N + I +LR G + PVL+ T+P G+AYHH+GL
Sbjct: 552 VAEMLCKFLSKDYLNHREKEK-----CEVIKSLRNIGNGKVCPVLKRTVPFGIAYHHSGL 606
Query: 854 TVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGR 913
T EER+++E Y G++ +LT TSTLAAGVNLPARRVI R P + F+ +Y+QM GR
Sbjct: 607 TSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYVANTFLKRNQYKQMVGR 666
Query: 914 AGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLS----EDKNGMTHAILEVVAG 969
AGR GIDT GES+L+ + ++ ++++ L++ PL +C S E G+ L ++
Sbjct: 667 AGRAGIDTAGESILLLQEKDKQQVLELIS---GPLETCCSHLVEEFTKGIQALFLSLIGL 723
Query: 970 GIVQTAEDIHRYVRCTLLNSTKPFQDVVKS----AQDSLRWLCHRKFLEW-----NEDTK 1020
I + DI++++ T + KS D+L L + L+ NE +
Sbjct: 724 KIAASLGDIYQFMSGTFFGVQQKILLKEKSLWEITVDALEHLTEKGLLQKDSCGDNEGLE 783
Query: 1021 L-YSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINV--EVEPD 1077
+ T LG+A+F ++ + DL + EG VL S LHL+YL+TP ++ + EPD
Sbjct: 784 CHFRITKLGQASFKGAIDLAYCDTLYRDLKKGLEGLVLESLLHLIYLTTPYDLAAQSEPD 843
Query: 1078 WELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLG 1137
W +Y+++F +LS +Q+V +GVSE ++ + A G +R K D
Sbjct: 844 WMVYFKQFGQLSPTEQNVAALLGVSESFIGKKAAGQAVR---KKVDKN------------ 888
Query: 1138 ITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFAS 1197
V R Y++ +L L++ET V V E F + RG +Q L A F+S
Sbjct: 889 --------------VVNRLYLSFVLYSLLKETNVWSVSEKFNLPRGYIQNLLMGAASFSS 934
Query: 1198 MVSVFCERL-GWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPL 1256
V FCE L ++ + L+ + ++++ V+AE++ L + V RA+ LY AG R+ +
Sbjct: 935 CVLHFCEELEEFWVYKALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYRSIM 994
Query: 1257 AIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEKAE 1305
+A A+ +VK I RR A++I + A+ ++ EKAE
Sbjct: 995 HLANANPEVLVKT-------IDHLSRR----QARQIVSSAKMLLHEKAE 1032
>sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN PE=1 SV=2
Length = 900
Score = 248 bits (633), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 169/549 (30%), Positives = 285/549 (51%), Gaps = 45/549 (8%)
Query: 1648 HLKD--GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAH 1705
H+ D G+D I +W++ P D + P+ E V+K N + + N R +
Sbjct: 340 HVADFIGLDPRIAAWLIDPSD---ATPSFEDLVEKYCEKSITVKVNST--YGNSSRNIVN 394
Query: 1706 NGCCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQAR 1765
+ L L L L + +E+PL+ +LA ME I V+ E +
Sbjct: 395 QNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTS 454
Query: 1766 NLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKG-----KQHPST 1820
LL +L+ LE++A+ +AG +F + + + +L+G LKL + N +++PST
Sbjct: 455 ALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPST 514
Query: 1821 DKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTA 1880
+ L+ LR HP+ +I E+R + K+ + + + + + K ++ W QT T
Sbjct: 515 SEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMK------KGSISSTWNQTGTV 568
Query: 1881 TGRLSMEEPNLQCV-EHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADY 1939
TGRLS + PN+Q + +H ++ + ++ G ++ I+ R F+ S+ + LAAD+
Sbjct: 569 TGRLSAKHPNIQGISKHPIQI-TTPKNFKGKEDKI--LTISPRAMFVSSKGH-TFLAADF 624
Query: 1940 SQIELRLMAHFSKDPALIGLLSKPH-GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGI 1998
SQIELR++ H S DP L+ L + DVF+ + ++W + V +R+QTK+++Y +
Sbjct: 625 SQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAV 684
Query: 1999 LYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRF 2058
+YG G L+ L EA + ++SF + + + A++ CHQ G V S+ GR+R
Sbjct: 685 VYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRP 744
Query: 2059 LSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQM 2118
L +I + + +++A+RQAVN + QGSAAD+ K+AMI++ + + +L A
Sbjct: 745 LPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAAS-----HTLTA---- 795
Query: 2119 LKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMES----AAL---LLVPLLVKIQVGS 2171
RL+ Q+HDEL+ EV+ I E +LV++ MES AL L VPL V + G
Sbjct: 796 -----RLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGR 850
Query: 2172 TWGSLEPFQ 2180
+WG L P Q
Sbjct: 851 SWGHLVPLQ 859
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 169/528 (32%), Positives = 266/528 (50%), Gaps = 52/528 (9%)
Query: 1653 IDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMR------RAAHN 1706
D ++S+ L + N++ K+ L E A + +G+ K+Q+ A
Sbjct: 444 FDTMLLSYTL----NSTGRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIPLEQATE 499
Query: 1707 GCCRRVAQTRALCSVLW-KLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQAR 1765
T L LW KL L+E +E+PL++VL+ ME G+ +D +
Sbjct: 500 YAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQS 559
Query: 1766 NLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCL 1825
N + +L LEK+AY LAG F+L + + +L+ L+LP+ + KG PST++ L
Sbjct: 560 NEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLELPVLQKTPKGA--PSTNEEVL 617
Query: 1826 DLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLS 1885
+ L + H + ++ +HR L+KL + + + +++Q +H + Q TATGRLS
Sbjct: 618 EELSYSHELPKILVKHRGLSKLKSTYTDKLPQM----VNSQTGRVHTSYHQAVTATGRLS 673
Query: 1886 MEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELR 1945
+PNLQ +I N E H R FI ++E + ++AADYSQIELR
Sbjct: 674 SSDPNLQ-------------NIPIRNEEGRHI----RQAFI-AREGYSIVAADYSQIELR 715
Query: 1946 LMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPN 2005
+MAH S D LI S+ D+ AA G S D V S++R K + +G++YGM
Sbjct: 716 IMAHLSGDQGLINAFSQGK-DIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF 774
Query: 2006 TLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFG 2065
LS QL S +A++ + + +P V ++ +GYVE+L GR+ +L I
Sbjct: 775 GLSRQLGISRADAQKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSS 834
Query: 2066 NNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRL 2125
N + A+R A+N+ QG+AADIIK AMI + +I + PD +
Sbjct: 835 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVI---RHDPD-------------IEM 878
Query: 2126 LLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
++QVHDELV EV + +++ ME+AA L+VPL+V++ VG W
Sbjct: 879 IMQVHDELVFEVRSEKVAFFREQIKQHMEAAAELVVPLIVEVGVGQNW 926
>sp|Q7TQ07|DPOLN_MOUSE DNA polymerase nu OS=Mus musculus GN=Poln PE=2 SV=2
Length = 864
Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 175/562 (31%), Positives = 284/562 (50%), Gaps = 71/562 (12%)
Query: 1648 HLKD--GIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAH 1705
H+ D G+D + +W++ P D + P+ E V K L + + R A+
Sbjct: 339 HVADFVGLDPRVAAWLIDPSD---TAPSFEDLVAKHLEKSITVKPSST------FREASR 389
Query: 1706 NGCCRRVAQ--------TRALCSVL-----WKLLVSEELIEALLNIEIPLVNVLADMELW 1752
N + V T LCS L W+L + +E+PL+ +LA ME
Sbjct: 390 NTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFCT---------LELPLIPILAVMENH 440
Query: 1753 GIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHN 1812
I VD E + LL +L+ LE++A+ +AG +F + + + +L+G LKL +
Sbjct: 441 KIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQRK 500
Query: 1813 ----KGKQHP-STDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQK 1867
G Q+ ST + L+ L+ HP+ +I E+R + K+ + + + + + K
Sbjct: 501 HLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKSTFIDGLLAYMK------K 554
Query: 1868 YTLHGHWLQTSTATGRLSMEEPNLQCV-EHMVEFKMSNEDIYGGNAEVDHCKINARDFFI 1926
++ W QT T TGRLS + PN+Q + +H + K+S + G E + I+ R F+
Sbjct: 555 GSISSTWNQTGTVTGRLSAKHPNIQGISKHPI--KISKPWNFKGKEE-ETVTISPRTLFV 611
Query: 1927 PSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKP-HGDVFTMIAARWTGRSEDSVGS 1985
S E LAAD+SQIELR++AH S DP L+ L + DVF+ + ++W + V
Sbjct: 612 -SSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTH 670
Query: 1986 QERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQ 2045
+R+QTK+++Y ++YG G L+ L + EA ++ F + + + + CH
Sbjct: 671 MDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHS 730
Query: 2046 KGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGV 2105
GYV S+ GR+R L +I + + +++A+RQAVN + QGSAAD+ K+AMI I + +
Sbjct: 731 AGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATS- 789
Query: 2106 YKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAA-------L 2158
+L A RL+ Q+HDEL+ EV+ + + E +LV++ MES
Sbjct: 790 ----PTLTA---------RLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQ 836
Query: 2159 LLVPLLVKIQVGSTWGSLEPFQ 2180
L VPL V + VG +WG L P Q
Sbjct: 837 LQVPLKVNLSVGRSWGHLTPLQ 858
>sp|Q04957|DPO1_BACCA DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1
Length = 877
Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 167/467 (35%), Positives = 240/467 (51%), Gaps = 41/467 (8%)
Query: 1708 CCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNL 1767
R+ A AL L E L+ +E PL ++LA+ME G+ VD + Q
Sbjct: 447 LVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGEE 506
Query: 1768 LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDL 1827
L ++LR +E++ Y LAG +F++ + + +L+ L+LP+ K K ST L+
Sbjct: 507 LAEQLRTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPV---LKKSKTGYSTSADVLEK 563
Query: 1828 LRHEHPIVPVIKEH-RTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSM 1886
L H IV I +H R L KL + + + + R T+K +H + Q T TGRLS
Sbjct: 564 LAPYHEIVENILQHYRQLGKLQSTYIEGLLKVVR--PDTKK--VHTIFNQALTQTGRLSS 619
Query: 1887 EEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRL 1946
EPNLQ + +E + KI R F+PS+ +W++ AADYSQIELR+
Sbjct: 620 TEPNLQNIPIRLE---------------EGRKI--RQAFVPSESDWLIFAADYSQIELRV 662
Query: 1947 MAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNT 2006
+AH ++D L+ + D+ T A SED V R Q K + +GI+YG+
Sbjct: 663 LAHIAEDDNLMEAFRR-DLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYG 721
Query: 2007 LSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGN 2066
L++ LN S EA E I+ + SFPGV ++ V QKGYV +L R+R+L I N
Sbjct: 722 LAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRN 781
Query: 2067 NKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLL 2126
+S A+R A+N+ QGSAADIIK AMI+++ A + + + RLL
Sbjct: 782 FNVRSFAERMAMNTPIQGSAADIIKKAMIDLN---------------ARLKEERLQARLL 826
Query: 2127 LQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
LQVHDEL+LE ++ LV + ME A L VPL V GSTW
Sbjct: 827 LQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTW 873
>sp|P52026|DPO1_GEOSE DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1 SV=2
Length = 876
Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 165/466 (35%), Positives = 237/466 (50%), Gaps = 40/466 (8%)
Query: 1708 CCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNL 1767
R+ A AL L L E L +E PL +LA+ME G+ VD + Q
Sbjct: 447 LVRKAAAIWALEEPLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAE 506
Query: 1768 LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDL 1827
L ++L+ +E++ Y LAG +F++ + + VL+ L+LP+ K K ST L+
Sbjct: 507 LTEQLQAVERRIYELAGQEFNINSPKQLGTVLFDKLQLPV---LKKTKTGYSTSADVLEK 563
Query: 1828 LRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSME 1887
L H IV I +R L KL + + + + + T K +H + Q T TGRLS
Sbjct: 564 LAPHHEIVEHILHYRQLGKLQSTYIEGLLKV--VHPVTGK--VHTMFNQALTQTGRLSSV 619
Query: 1888 EPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLM 1947
EPNLQ + +E + KI R F+PS+ +W++ AADYSQIELR++
Sbjct: 620 EPNLQNIPIRLE---------------EGRKI--RQAFVPSEPDWLIFAADYSQIELRVL 662
Query: 1948 AHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTL 2007
AH ++D LI + D+ T A SE+ V + R Q K + +GI+YG+ L
Sbjct: 663 AHIAEDDNLIEAFRRGL-DIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGL 721
Query: 2008 SEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNN 2067
++ LN + EA E I+ + +SFPGV ++ V QKGYV +L R+R+L I N
Sbjct: 722 AQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNF 781
Query: 2068 KEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLL 2127
+S A+R A+N+ QGSAADIIK AMI+ L+ + + + RLLL
Sbjct: 782 NVRSFAERTAMNTPIQGSAADIIKKAMID---------------LSVRLREERLQARLLL 826
Query: 2128 QVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
QVHDEL+LE I+ LV + ME A L VPL V G TW
Sbjct: 827 QVHDELILEAPKEEIERLCRLVPEVMEQAVTLRVPLKVDYHYGPTW 872
>sp|O52225|DPO1_THEFI DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1
SV=1
Length = 833
Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 161/449 (35%), Positives = 240/449 (53%), Gaps = 45/449 (10%)
Query: 1727 VSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNL-LQKKLRYLEKKAYTLAGM 1785
+SE+L+ +E PL VLA ME G+ +D+ L+A + L+K++ LE + + LAG
Sbjct: 422 LSEKLLWLYQEVERPLSRVLAHMEARGVRLDVP-LLEALSFELEKEMERLEGEVFRLAGH 480
Query: 1786 KFSLYTAADIANVLYGHLKL-PIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTL 1844
F+L + + VL+ L L P+ GK+ ST + L+ LR HPIV +I ++R L
Sbjct: 481 PFNLNSRDQLERVLFDELGLTPVGRTEKTGKR--STAQGALEALRGAHPIVELILQYREL 538
Query: 1845 AKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSN 1904
+KL + L + L + + LH + QT+TATGRLS +PNLQ + V +
Sbjct: 539 SKLKSTYLDPLPRL----VHPRTGRLHTRFNQTATATGRLSSSDPNLQNIP--VRTPLGQ 592
Query: 1905 EDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPH 1964
R F+ ++E W+LLAADYSQIELR++AH S D L + +
Sbjct: 593 ---------------RIRKAFV-AEEGWLLLAADYSQIELRVLAHLSGDENLKRVFRE-G 635
Query: 1965 GDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKS 2024
D+ T AA G V + R K + +G+LYGM + LS++L EA+ I+
Sbjct: 636 KDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIER 695
Query: 2025 FKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQG 2084
+ SFP V +W+ + +GYVE+L GR+R++ + + A+R A N QG
Sbjct: 696 YFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQG 755
Query: 2085 SAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKE 2144
+AAD++KIAM+ + + KP L A+ LLLQVHDELVLEV +E
Sbjct: 756 TAADLMKIAMVKLFPRL-----KP---LGAH---------LLLQVHDELVLEVPEDRAEE 798
Query: 2145 AVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
A +LV++ ME+A L VPL V++ VG W
Sbjct: 799 AKALVKEVMENAYPLDVPLEVEVGVGRDW 827
>sp|O34996|DPO1_BACSU DNA polymerase I OS=Bacillus subtilis (strain 168) GN=polA PE=3 SV=1
Length = 880
Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 157/521 (30%), Positives = 255/521 (48%), Gaps = 40/521 (7%)
Query: 1653 IDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRV 1712
D + ++I+ P + ++ K+ + S + + + R+
Sbjct: 396 FDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAVPSEDVLSEHLGRKA 455
Query: 1713 AQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKL 1772
++L L + L + + +E +E+PL +L +ME G+ VD++ + L KL
Sbjct: 456 LAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKL 515
Query: 1773 RYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEH 1832
+ E+K + +AG F++ + + +L+ + LP+ + K K ST L+ L +H
Sbjct: 516 KEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVK---KTKTGYSTSADVLEKLADKH 572
Query: 1833 PIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQ 1892
IV I ++R + KL + + + + R + +H + Q T TGRLS +PNLQ
Sbjct: 573 DIVDYILQYRQIGKLQSTYIEGLLKVTR----PDSHKVHTRFNQALTQTGRLSSTDPNLQ 628
Query: 1893 CVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSK 1952
+ +E + KI R F+PS+++W++ AADYSQIELR++AH SK
Sbjct: 629 NIPIRLE---------------EGRKI--RQAFVPSEKDWLIFAADYSQIELRVLAHISK 671
Query: 1953 DPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLN 2012
D LI + D+ T A ++D V S R Q K + +GI+YG+ LS+ L
Sbjct: 672 DENLIEAFTNDM-DIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLG 730
Query: 2013 CSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSK 2072
+ EA I + SF GV +++ +V QKGYV +L R+R++ ++ N +S
Sbjct: 731 ITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSF 790
Query: 2073 AQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDE 2132
A+R A+N+ QGSAADIIK AMI+ +AA + + + RLLLQVHDE
Sbjct: 791 AERTAMNTPIQGSAADIIKKAMID---------------MAAKLKEKQLKARLLLQVHDE 835
Query: 2133 LVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
L+ E I+ LV + ME A L VPL V G +W
Sbjct: 836 LIFEAPKEEIEILEKLVPEVMEHALALDVPLKVDFASGPSW 876
>sp|P80194|DPO1_THECA DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1
SV=2
Length = 834
Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 162/495 (32%), Positives = 250/495 (50%), Gaps = 52/495 (10%)
Query: 1683 SSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPL 1742
++ A G W AAH R + R ++L +L E+L+ +E PL
Sbjct: 387 TTPEGVARRYGGEWTED---AAH----RALLSERLHRNLLKRLQGEEKLLWLYHEVEKPL 439
Query: 1743 VNVLADMELWGIGVDMEGCLQARNL-LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYG 1801
VLA ME G+ +D+ LQA +L L +++R LE++ + LAG F+L + + VL+
Sbjct: 440 SRVLAHMEATGVRLDV-AYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQLERVLFD 498
Query: 1802 HLKLP-IPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLAR 1860
L+LP + + GK+ ST L+ LR HPIV I +HR L KL N + + SL
Sbjct: 499 ELRLPALGKTQKTGKR--STSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVH 556
Query: 1861 ISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKIN 1920
+ LH + QT+TATGRLS +PNLQ + V +
Sbjct: 557 PNTGR----LHTRFNQTATATGRLSSSDPNLQNIP--VRTPLGQ---------------R 595
Query: 1921 ARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSE 1980
R F+ ++ W L+A DYSQIELR++AH S D LI + + D+ T A+ G
Sbjct: 596 IRRAFV-AEAGWALVALDYSQIELRVLAHLSGDENLIRVFQE-GKDIHTQTASWMFGVPP 653
Query: 1981 DSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAV 2040
++V R K + +G+LYGM + LS++L EA I+ + SFP V +W+ +
Sbjct: 654 EAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTL 713
Query: 2041 SSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSI 2100
++GYVE+L GR+R++ + + A+R A N QG+AAD++K+AM+ +
Sbjct: 714 EEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP- 772
Query: 2101 IVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLL 2160
++ + R+LLQVHDEL+LE + +E +L ++ ME A L
Sbjct: 773 ----------------RLREMGARMLLQVHDELLLEAPQAGAEEVAALAKEAMEKAYPLA 816
Query: 2161 VPLLVKIQVGSTWGS 2175
VPL V++ +G W S
Sbjct: 817 VPLEVEVGMGEDWLS 831
>sp|P52028|DPO1T_THET8 DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=polA PE=3 SV=2
Length = 834
Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 162/495 (32%), Positives = 251/495 (50%), Gaps = 52/495 (10%)
Query: 1683 SSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPL 1742
++ A G W AAH R + R ++L +L E+L+ +E PL
Sbjct: 387 TTPEGVARRYGGEWTED---AAH----RALLSERLHRNLLKRLEGEEKLLWLYHEVEKPL 439
Query: 1743 VNVLADMELWGIGVDMEGCLQARNL-LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYG 1801
VLA ME G+ +D+ LQA +L L +++R LE++ + LAG F+L + + VL+
Sbjct: 440 SRVLAHMEATGVRLDV-AYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQLERVLFD 498
Query: 1802 HLKLP-IPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLAR 1860
L+LP + + GK+ ST L+ LR HPIV I +HR L KL N + + SL
Sbjct: 499 ELRLPALGKTQKTGKR--STSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSL-- 554
Query: 1861 ISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKIN 1920
+ + LH + QT+TATGRLS +PNLQ + V +
Sbjct: 555 --VHPRTGRLHTRFNQTATATGRLSSSDPNLQNIP--VRTPLGQ---------------R 595
Query: 1921 ARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSE 1980
R F+ ++ W L+A DYSQIELR++AH S D LI + + D+ T A+ G
Sbjct: 596 IRRAFV-AEAGWALVALDYSQIELRVLAHLSGDENLIRVFQE-GKDIHTQTASWMFGVPP 653
Query: 1981 DSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAV 2040
++V R K + +G+LYGM + LS++L EA I+ + SFP V +W+ +
Sbjct: 654 EAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTL 713
Query: 2041 SSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSI 2100
++GYVE+L GR+R++ + + A+R A N QG+AAD++K+AM+ +
Sbjct: 714 EEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP- 772
Query: 2101 IVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLL 2160
++ + R+LLQVHDEL+LE + +E +L ++ ME A L
Sbjct: 773 ----------------RLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA 816
Query: 2161 VPLLVKIQVGSTWGS 2175
VPL V++ +G W S
Sbjct: 817 VPLEVEVGMGEDWLS 831
>sp|P59200|DPO1_STRR6 DNA polymerase I OS=Streptococcus pneumoniae (strain ATCC BAA-255 /
R6) GN=polA PE=3 SV=1
Length = 877
Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 155/446 (34%), Positives = 234/446 (52%), Gaps = 46/446 (10%)
Query: 1732 IEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYT 1791
+E L ++E PL VLA ME+ GI V E L+ + + + L ++ Y LAG +F++ +
Sbjct: 470 LELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNS 529
Query: 1792 AADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIK---EHRTLAKLL 1848
+ +L+ L LP+ E K K ST +D+L PI P++K ++R +AK+
Sbjct: 530 PKQLGVLLFEKLGLPL-EYTKKTKTGYST---AVDVLERLAPIAPIVKKILDYRQIAKIQ 585
Query: 1849 NCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIY 1908
+ + L ++ K +H ++Q T TGRLS +PNLQ +
Sbjct: 586 ST---YVIGLQDWILADGK--IHTRYVQDLTQTGRLSSVDPNLQNIP------------- 627
Query: 1909 GGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVF 1968
A ++ ++ R F+P E+ +LL++DYSQIELR++AH SKD LI + D+
Sbjct: 628 ---ARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEG-ADIH 682
Query: 1969 TMIAARWTG-RSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKS 2027
T A R G D+V + +R K + +G++YG+ LS L S EAK I ++
Sbjct: 683 TSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIDTYFE 742
Query: 2028 SFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAA 2087
FPG+ +++ V KGYVE+L R+R L I N + A+R A+NS QGSAA
Sbjct: 743 RFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAINSPIQGSAA 802
Query: 2088 DIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVS 2147
DI+KIAMI + +V G Y + ++LLQVHDE+VLEV S + E
Sbjct: 803 DILKIAMIQLDKALVAGGY---------------QTKMLLQVHDEIVLEVPKSELVEMKK 847
Query: 2148 LVQKCMESAALLLVPLLVKIQVGSTW 2173
LV++ ME A L VPL+ G+TW
Sbjct: 848 LVKQTMEEAIQLSVPLIADENEGATW 873
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 216/771 (28%), Positives = 344/771 (44%), Gaps = 106/771 (13%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
LP EI Y+ GI +LYP Q E + G+L+ +NL+ T++GK+ +AE+ ML+ +++
Sbjct: 8 LPDEIKRFYENSGILELYPPQAEAVE-KGLLEGKNLLAAIPTASGKTLLAELAMLKSVLN 66
Query: 569 TGKMALLVLPYVSICAEKAEHLE---VLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIE 625
GK AL ++P ++ +EK + VL +G Y G + + V T E
Sbjct: 67 GGK-ALYIVPLRALASEKFRRFQEFSVLGMRVGISTGDYDRRDEGLGI---NDIIVATSE 122
Query: 626 KANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGE 685
K +SL+ E + EI ++V DE+H++ +RG LE+ L+KLR
Sbjct: 123 KTDSLLRN--ETAWMQEISVVVADEVHLIDSPDRGPTLEITLSKLR-------------- 166
Query: 686 NSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYS 745
+ +P+ Q++ +SAT+ N +A WL A L + +RP L E + Y
Sbjct: 167 -------RMNPS--CQVLALSATVGNADELAAWLDAELVLSEWRPTDLMEGVFYNGIFYC 217
Query: 746 KKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKK 805
K + +G D V L + ++EG L+F SSRK C A+ +KK
Sbjct: 218 KDKE--------KPVGQPTKDEAVNLVLDTIKEGGQCLVFESSRKNCMGFAKKAVSAVKK 269
Query: 806 FSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCY 865
+ + D E + A + + + VL + SG A+HHAGLT RE+VE +
Sbjct: 270 ---TLSNEDRETL-AGIADEIIENSETDVSSVLATCVRSGTAFHHAGLTTPLRELVENGF 325
Query: 866 RKGLVRVLTATSTLAAGVNLPARRVIFRQPR-----IGRDFIDGTRYRQMAGRAGRTGID 920
R+G ++++++T TLAAG+NLPARRVI R R G I Y+QMAGRAGR +D
Sbjct: 326 REGRIKIISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPRLD 385
Query: 921 TKGESMLICKPEE--VKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDI 978
GE++L+ K E V + + S L + TH IL ++ G +T E++
Sbjct: 386 PYGEAVLLAKSYEEFVFLFEKYIEAGAEDIWSKLGTENALRTH-ILSTISNGFARTREEL 444
Query: 979 HRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCP 1038
++ T + + L +L LE + D + +T G+ + P
Sbjct: 445 MDFLEATFFAFQYSNFGLSAVVDECLDFLRREGMLEKDPDALV--STVFGKLVSRLYIDP 502
Query: 1039 EESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQ 1098
+ ++ L A G + L + ST PD L Y R S Q V +
Sbjct: 503 LSAALIAKGLREA--GTLTELTLLHLICST-------PDMRLMYMR----SQDYQEVNDY 549
Query: 1099 VGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNN-MLSDAQTLRVCKRFY 1157
V MAH G K+ I L + +T
Sbjct: 550 V---------MAHA--------------GEFSKVPNPFNIAEYEWFLGEVKT-------- 578
Query: 1158 VALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGL--I 1215
+L+L + E P E+C F + G + A + A ++ V + G DL+G
Sbjct: 579 -SLLLMDWIHEKPENEICLKFGIGEGDIHATADIA---EWIMHVTAQLAGLLDLKGAKEA 634
Query: 1216 AKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEI 1266
++ + R+ +G E+++L I V RAR LY+AG ++ +A AS I
Sbjct: 635 SELEKRIRYGAAPELMDLLDIRSVGRVRARKLYEAGFKSTAELAAASPEHI 685
>sp|P59199|DPO1_STRPN DNA polymerase I OS=Streptococcus pneumoniae serotype 4 (strain ATCC
BAA-334 / TIGR4) GN=polA PE=3 SV=1
Length = 877
Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 155/446 (34%), Positives = 233/446 (52%), Gaps = 46/446 (10%)
Query: 1732 IEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYT 1791
+E L ++E PL VLA ME+ GI V E L+ + + + L ++ Y LAG +F++ +
Sbjct: 470 LELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNS 529
Query: 1792 AADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIK---EHRTLAKLL 1848
+ +L+ L LP+ E K K ST +D+L PI P++K ++R +AK+
Sbjct: 530 PKQLGVLLFEKLGLPL-EYTKKTKTGYST---AVDVLERLAPIAPIVKKILDYRQIAKIQ 585
Query: 1849 NCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIY 1908
+ + L ++ K +H ++Q T TGRLS +PNLQ +
Sbjct: 586 ST---YVIGLQDWILADGK--IHTRYVQDLTQTGRLSSVDPNLQNIP------------- 627
Query: 1909 GGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVF 1968
A ++ ++ R F+P E+ +LL++DYSQIELR++AH SKD LI + D+
Sbjct: 628 ---ARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEG-ADIH 682
Query: 1969 TMIAARWTG-RSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKS 2027
T A R G D V + +R K + +G++YG+ LS L S EAK I ++
Sbjct: 683 TSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIDTYFE 742
Query: 2028 SFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAA 2087
FPG+ +++ V KGYVE+L R+R L I N + A+R A+NS QGSAA
Sbjct: 743 RFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAINSPIQGSAA 802
Query: 2088 DIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVS 2147
DI+KIAMI + +V G Y + ++LLQVHDE+VLEV S + E
Sbjct: 803 DILKIAMIQLDKALVAGGY---------------QTKMLLQVHDEIVLEVPKSELVEMKK 847
Query: 2148 LVQKCMESAALLLVPLLVKIQVGSTW 2173
LV++ ME A L VPL+ G+TW
Sbjct: 848 LVKQTMEEAIQLSVPLIADENEGATW 873
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain DSM
6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 205/777 (26%), Positives = 346/777 (44%), Gaps = 89/777 (11%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
+P +I Y+ GI +LYP Q E + + G+L+++NL+ T++GK+ +AE+ M++ +
Sbjct: 8 IPRDIIGFYEDSGIKELYPPQAEAIEM-GLLEKKNLLAAIPTASGKTLLAELAMIKAIRE 66
Query: 569 TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKA 627
GK AL ++P ++ +EK E + L P G V G+ + V T EK
Sbjct: 67 GGK-ALYIVPLRALASEKFERFKEL-APFGIKVGISTGDLDSRADWLGVNDIIVATSEKT 124
Query: 628 NSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENS 687
+SL+ + EI +V+DE+H++ +NRG LE+ +TKL
Sbjct: 125 DSLLRN--GTSWMDEITTVVVDEIHLLDSKNRGPTLEVTITKLM---------------- 166
Query: 688 GTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAI---- 743
+ +P +Q+V +SAT+ N +ADWL AAL + +RP L E + G+AI
Sbjct: 167 -----RLNP--DVQVVALSATVGNAREMADWLGAALVLSEWRPTDLHEGVLFGDAINFPG 219
Query: 744 YSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFL 803
KK+D + + D V L + ++ L+F SSR+ C A+ S +
Sbjct: 220 SQKKIDRL------------EKDDAVNLVLDTIKAEGQCLVFESSRRNCAGFAKTASSKV 267
Query: 804 KKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVET 863
K N + I +++ + VL + GVA+HHAGL R++VE
Sbjct: 268 AKILDN--DIMIKLAGIAEEVESTGETDTAI--VLANCIRKGVAFHHAGLNSNHRKLVEN 323
Query: 864 CYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR-----IGRDFIDGTRYRQMAGRAGRTG 918
+R+ L++V+++T TLAAG+NLPARRVI R R G I Y+QMAGRAGR
Sbjct: 324 GFRQNLIKVISSTPTLAAGLNLPARRVIIRSYRRFDSNFGMQPIPVLEYKQMAGRAGRPH 383
Query: 919 IDTKGESMLICKP-EEVKKIM-GLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAE 976
+D GES+L+ K +E ++M + + S L + TH +L + G T +
Sbjct: 384 LDPYGESVLLAKTYDEFAQLMENYVEADAEDIWSKLGTENALRTH-VLSTIVNGFASTRQ 442
Query: 977 DIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSL 1036
++ + T + + + D L +L + + ED + S L GS +
Sbjct: 443 ELFDFFGATFFAYQQDKWMLEEVINDCLEFLIDKAMVSETEDIEDASKLFLRGTRLGSLV 502
Query: 1037 CPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVG 1096
S++ +D LS ++ + + ST N + +L+ G
Sbjct: 503 ----SMLYIDPLSGSK----IVDGFKDIGKSTGGN----------------MGSLEDDKG 538
Query: 1097 NQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSN-----NMLSDAQTLR 1151
+ + V++ L+ + P LR++ + EY + + + L +
Sbjct: 539 DDITVTDMTLLHLVCSTPDMRQLYLRNTDYTIVN--EYIVAHSDEFHEIPDKLKETDYEW 596
Query: 1152 VCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDL 1211
A++L V E ++ F V G + AL + + + E LG +
Sbjct: 597 FMGEVKTAMLLEEWVTEVSAEDITRHFNVGEGDIHALADTSEWLMHAAAKLAELLG-VEY 655
Query: 1212 EGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVK 1268
+ R+ +G +++EL I V RAR LY AG + + A IS + K
Sbjct: 656 SSHAYSLEKRIRYGSGLDLMELVGIRGVGRVRARKLYNAGFVSVAKLKGADISVLSK 712
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 200/755 (26%), Positives = 347/755 (45%), Gaps = 103/755 (13%)
Query: 511 SEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG 570
S++ I K RGI KL P Q E + G+++ + L+ T++GK+ +AE+ M+ L++ G
Sbjct: 13 SKVKDIIKSRGIKKLNPPQTEAVK-KGLIEDKRLLITTPTASGKTLMAELGMISHLLNKG 71
Query: 571 KMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKANS 629
A+ V P ++ +EK + E LG V G+ ++ + V T EK +S
Sbjct: 72 GKAIYVTPLRALTSEKYSTFKDW-EKLGFKVGVTSGDYDTDDPWLRNFDIIVTTYEKLDS 130
Query: 630 LVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGT 689
L E L +I V+DE H + D +RG ++E + + A +GT
Sbjct: 131 LWRHSAE--WLKDIDYFVLDEFHYMNDGDRGPVVEGVAVR---AKRQGT----------- 174
Query: 690 SSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMD 749
I+ +SAT+ N VA WL A + TN+RPVPL+E + K
Sbjct: 175 ------------ILALSATIGNAKDVAKWLNADIVATNWRPVPLKEGVMYSEG--KKGHI 220
Query: 750 VVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809
++ + T L G DP I+ +++ +G V++F SSRK E+TA +S+++ ++
Sbjct: 221 ILYSDGTTNKLKGDDP--IIAYTLDILSKGGQVIVFRSSRKYAETTAMKISQYMNFVKLD 278
Query: 810 VHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL 869
D + ++ I + + VL + GVA+HHAGL+ R+++E +R+ +
Sbjct: 279 ----DKKLLETAERIKEVEDAGSNEKEVLYNLIVRGVAFHHAGLSKGLRDIIEASFRERI 334
Query: 870 VRVLTATSTLAAGVNLPARRVI------FRQPRIG-RDFIDGTRYRQMAGRAGRTGIDTK 922
++V+TAT TLAAGVNLPAR V+ F + +G + I YRQM+GRAGR G D
Sbjct: 335 IKVITATPTLAAGVNLPARAVVIGDIYRFNRKIVGFTEMISTMEYRQMSGRAGRPGYDNH 394
Query: 923 GESMLICKPE-EVKKIMG-LLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHR 980
GE++++ + + EV K++ L+ P+ S L + + + + + G + T + +
Sbjct: 395 GEAIILVRSKVEVDKVIDKYLHSDIEPIESKLGAEGPFFSFVLSLIASEGEI-TEDRLKD 453
Query: 981 YVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEE 1040
YV T+L+ Q V K +++ WL +F++ N+D T GR L P
Sbjct: 454 YVEDTMLSK----QLVRKYYNNAIDWLSKNEFIKSNDDR--LQLTKFGRRVSDLYLNPFT 507
Query: 1041 SLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVG 1100
++ + + L RA +A HL+ + PD L E AL ++ ++
Sbjct: 508 AVTIKNYLERAESPCDIAY-FHLIAYT--------PDGPLVSVGRNEEDALLDNLDCELI 558
Query: 1101 VSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVAL 1160
+ EP +LE+ +N +S + VA
Sbjct: 559 IDEP------------------------DDELEF------SNYISALK---------VAF 579
Query: 1161 ILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQN 1220
IL ++E + + + G ++A+ + L ++ K
Sbjct: 580 ILKDWIEEVDEDTILSKYGIGSGDLRAIIDTMEWLTYGAFHVSSILDLNQHTSVLEKLHK 639
Query: 1221 RVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTP 1255
R++ GV+ E++EL +P + +RAR L+ G++ P
Sbjct: 640 RIADGVKEELLELVRVPGIGRARARLLFNQGIKRP 674
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 222/793 (27%), Positives = 354/793 (44%), Gaps = 143/793 (18%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
LP E+ Y GI +LYP Q E + G+L+ RNL+ T++GK+ +AE+ ML+ +++
Sbjct: 8 LPDEVKQFYLNSGIMELYPPQAEAVE-KGLLEGRNLLAAIPTASGKTLLAELAMLKSILA 66
Query: 569 TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-----QGGGSLPKDTSVAVCT 623
GK AL ++P ++ +EK E LG V G+ +G G + V T
Sbjct: 67 GGK-ALYIVPLRALASEKFRRFREFSE-LGIRVGISTGDYDLRDEGLGV----NDIIVAT 120
Query: 624 IEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSS 683
EK +SL+ E + EI ++V DE+H++ +RG LE+ L KLR
Sbjct: 121 SEKTDSLLRN--ETVWMQEISVVVADEVHLIDSPDRGPTLEVTLAKLR------------ 166
Query: 684 GENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAI 743
K +P+ QI+ +SAT+ N +A WL+A L + +RP L E +
Sbjct: 167 ---------KMNPS--CQILALSATVGNADELAVWLEAELVVSEWRPTELLEGVFFNGTF 215
Query: 744 YSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFL 803
Y K D +T+ + D V L + +++ L+F SSRK C + A+ + +
Sbjct: 216 YCK--DREKTVEQSTK------DEAVNLALDTLKKDGQCLVFESSRKNCMAFAKKAASTV 267
Query: 804 KKFSINVHSSDSEFIDITSAIDALRRCPAGL-DPVLEET-----------LPSGVAYHHA 851
KK SA D R AG+ D +LE + + SG A+HHA
Sbjct: 268 KK--------------TLSAED--RNALAGIADEILENSETDTSTNLAVCIRSGTAFHHA 311
Query: 852 GLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI-----GRDFIDGTR 906
GLT RE+VE +R G ++++++T TLAAG+NLPARRVI R R G I
Sbjct: 312 GLTTPLRELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIRNYRRYSSEDGMQPIPVLE 371
Query: 907 YRQMAGRAGRTGIDTKGESMLICKP--EEVKKIMGLLNESCPPLHSCLSEDKNGMTHAIL 964
Y+QMAGRAGR +D GE++L+ K E V + + + S L + TH +L
Sbjct: 372 YKQMAGRAGRPRLDPYGEAVLVAKSYKEFVFLFENYIEANAEDIWSKLGTENALRTH-VL 430
Query: 965 EVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYST 1024
++ G +T +++ ++ T + + L +L LE +D L T
Sbjct: 431 STISNGFARTYDELMDFLEATFFAFQYSNFGLSTVVNECLNFLRQEGMLE--KDDALIPT 488
Query: 1025 TPLGRAAFGSSLCPEESLIVLDDLSRAR-----EGFVLASDLHLVYLSTPINVEVEPDWE 1079
+ FG + S + +D LS AR +G S+L L++L V PD
Sbjct: 489 S------FGKLV----SRLYIDPLSAARIAKGLKGAKSLSELTLLHL-----VCSTPDMR 533
Query: 1080 LYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGIT 1139
L Y R + ++ V MAH + D+T + E+ LG
Sbjct: 534 LLYMRSHDYQDINDYV-------------MAHASEFVKVPSPFDTT-----EYEWFLG-- 573
Query: 1140 SNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMV 1199
+L+L + E E+C F G + ++ + A ++
Sbjct: 574 ---------------EVKTSLLLLDWIHEKSENEICLKFGTGEGDIHSIADIA---EWIM 615
Query: 1200 SVFCERLGWYDLEGL--IAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLA 1257
V + G DL+G A+ + R+ +G E+++L I + RAR LY+AG ++
Sbjct: 616 HVTSQLAGLLDLKGAREAAELEKRIHYGAAPELIDLLNIRGIGRVRARKLYEAGFKSSAE 675
Query: 1258 IAEASISEIVKAL 1270
+AE ++ L
Sbjct: 676 LAEVDPEKVAALL 688
>sp|Q59156|DPO1_CALBD DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888
/ DSM 6725 / Z-1320) GN=polA PE=3 SV=2
Length = 850
Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 149/443 (33%), Positives = 233/443 (52%), Gaps = 53/443 (11%)
Query: 1737 NIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIA 1796
NIE PL+ VL +ME G VD + +Q ++ K+ LE + Y +AG F++ + ++
Sbjct: 451 NIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWFNINSPKQLS 510
Query: 1797 NVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSIC 1856
+L+ LKLP+ + K K STD L+ L +H IVP+I ++R K+L +
Sbjct: 511 YILFEKLKLPVIK---KTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGL- 566
Query: 1857 SLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDH 1916
L I+ S+ + +H ++QT TATGRL+ +PNLQ + + D
Sbjct: 567 -LQAINPSSGR--VHTTFIQTGTATGRLASSDPNLQNIP----------------VKYDE 607
Query: 1917 CKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWT 1976
K+ R F+P + +L+ ADYSQIELR++AH S+D LI K + D+ + AA
Sbjct: 608 GKL-IRKVFVP-EGGHVLIDADYSQIELRILAHISEDERLISAF-KNNVDIHSQTAAEVF 664
Query: 1977 GRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWL 2036
G V + R Q K + +GI+YG+ L+ + S EA E I + +P V +L
Sbjct: 665 GVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKEYL 724
Query: 2037 HVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMIN 2096
V G+V +L RKR++ IK N + A+R A+NS QGSAADI+K+AMI
Sbjct: 725 DNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAMIK 784
Query: 2097 IHSIIVGGVYKPDSSLAANFQMLKG---RCRLLLQVHDELVLEV---DPSVIKEAVSLVQ 2150
+ +Q LK + +++LQVHDEL++E + ++KE +V+
Sbjct: 785 V------------------YQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKE---IVK 823
Query: 2151 KCMESAALLLVPLLVKIQVGSTW 2173
+ ME+A L VPL+V+++ G W
Sbjct: 824 REMENAVALKVPLVVEVKEGLNW 846
>sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable OS=Thermus aquaticus GN=polA PE=1 SV=1
Length = 832
Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 159/469 (33%), Positives = 243/469 (51%), Gaps = 48/469 (10%)
Query: 1711 RVAQTRALCSVLWKLLVSEE-LIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNL-L 1768
R A + L + LW L EE L+ +E PL VLA ME G+ +D+ L+A +L +
Sbjct: 405 RAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDV-AYLRALSLEV 463
Query: 1769 QKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLP-IPEGHNKGKQHPSTDKHCLDL 1827
+++ LE + + LAG F+L + + VL+ L LP I + GK+ ST L+
Sbjct: 464 AEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKR--STSAAVLEA 521
Query: 1828 LRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSME 1887
LR HPIV I ++R L KL + + + L + + LH + QT+TATGRLS
Sbjct: 522 LREAHPIVEKILQYRELTKLKSTYIDPLPDL----IHPRTGRLHTRFNQTATATGRLSSS 577
Query: 1888 EPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLM 1947
+PNLQ + V + R FI ++E W+L+A DYSQIELR++
Sbjct: 578 DPNLQNIP--VRTPLGQ---------------RIRRAFI-AEEGWLLVALDYSQIELRVL 619
Query: 1948 AHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTL 2007
AH S D LI + + D+ T A+ G ++V R K + +G+LYGM + L
Sbjct: 620 AHLSGDENLIRVFQEGR-DIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRL 678
Query: 2008 SEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNN 2067
S++L EA+ I+ + SFP V +W+ + ++GYVE+L GR+R++ ++
Sbjct: 679 SQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVK 738
Query: 2068 KEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLL 2127
+ A+R A N QG+AAD++K+AM+ + ++ + R+LL
Sbjct: 739 SVREAAERMAFNMPVQGTAADLMKLAMVKLFP-----------------RLEEMGARMLL 781
Query: 2128 QVHDELVLEVDPSVIKEAVS-LVQKCMESAALLLVPLLVKIQVGSTWGS 2175
QVHDELVLE P EAV+ L ++ ME L VPL V++ +G W S
Sbjct: 782 QVHDELVLEA-PKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLS 829
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 214 bits (544), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 214/777 (27%), Positives = 346/777 (44%), Gaps = 111/777 (14%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
LP E+ Y+ GI +LYP Q E + G+L+ +NL+ T++GK+ +AE+ ML+ +++
Sbjct: 8 LPDEVKRFYENSGIPELYPPQAEAVE-KGLLEGKNLLAAIPTASGKTLLAELAMLKSVLA 66
Query: 569 TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-----QGGGSLPKDTSVAVCT 623
GK AL ++P ++ +EK + E LG V G+ +G G + V T
Sbjct: 67 GGK-ALYIVPLRALASEKFRRFQDFSE-LGIRVGISTGDYDRRDEGLGI----NDIIVAT 120
Query: 624 IEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSS 683
EK +SL+ E + EI ++V+DE+H++ +RG LE+ L KLR
Sbjct: 121 SEKTDSLLRN--ETAWMQEISVVVVDEVHLIDSADRGPTLEVTLAKLR------------ 166
Query: 684 GENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAI 743
K +P QI+ +SAT+ N +A WL A L + +RP L E +
Sbjct: 167 ---------KMNPF--CQILALSATVGNADELAAWLDAELVLSEWRPTDLMEGVFFDGTF 215
Query: 744 YSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFL 803
+ K + + + D + L + ++EG L+F SSRK C A+ + +
Sbjct: 216 FCKDKEKL--------IEQPTKDEAINLVLDTLREGGQCLVFESSRKNCMGFAKKATSAV 267
Query: 804 KKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVET 863
KK + + D E + A + L VL + +G A+HHAGLT RE+VET
Sbjct: 268 KK---TLSAEDKEKL-AGIADEILENSETDTASVLASCVRAGTAFHHAGLTSPLRELVET 323
Query: 864 CYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR-----IGRDFIDGTRYRQMAGRAGRTG 918
+R+G V+++++T TLAAG+NLPARRVI R R G I Y+QMAGRAGR
Sbjct: 324 GFREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPR 383
Query: 919 IDTKGESMLICKPEEVKKIM--GLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAE 976
+D GE++L+ K E + + + S L + TH +L ++ G +T E
Sbjct: 384 LDPYGEAVLLAKSYEELLFLFEKYIEAGAEDIWSKLGTENALRTH-VLSTISNGFARTKE 442
Query: 977 DIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSL 1036
++ ++ T + + L +L LE + D + +T G+ +
Sbjct: 443 ELMDFLEATFFAYQYSNFGLSVVVDECLNFLRQEGMLEQDSDALI--STMFGKLVSRLYI 500
Query: 1037 CPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVG 1096
P + ++ L A G + L + ST PD L Y R + ++ V
Sbjct: 501 DPLSAALIAKGLREA--GTLTELTLLHLVCST-------PDMRLMYMRSQDYQDINDFV- 550
Query: 1097 NQVGVSEPYLMRMAHGAPM-RISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKR 1155
MAH ++ S +EY LS+ +T
Sbjct: 551 ------------MAHAEEFSKVPSPF--------NIVEYEW------FLSEVKT------ 578
Query: 1156 FYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGL- 1214
+L+L + E P E+C F G + + A + + L DL+G
Sbjct: 579 ---SLLLMDWIHEKPENEICLKFGTGEGDIHTTADIAEWIMHVATQLARLL---DLKGAK 632
Query: 1215 -IAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270
A+ + R+ +G E+++L I + RAR LY AG ++ +A A+ E V AL
Sbjct: 633 EAAELEKRIHYGAGPELMDLLDIRGIGRVRARKLYGAGFKSTADLAGAT-PEKVAAL 688
>sp|P30313|DPO1F_THETH DNA polymerase I, thermostable OS=Thermus thermophilus GN=polA PE=1
SV=1
Length = 831
Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 167/535 (31%), Positives = 262/535 (48%), Gaps = 64/535 (11%)
Query: 1644 LSPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANR-SGRWKNQMRR 1702
L+ + L++G+D L+P+D +P L + ++ A R G W
Sbjct: 355 LAVLALREGLD-------LFPED----DPMLLAYLLDPSNTTPEGVARRYGGEW------ 397
Query: 1703 AAHNGCCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCL 1762
+ R + R ++ +L E L+ +E PL VLA ME G+ +D+ L
Sbjct: 398 -TEDAGERALLAERLFQTLKERLKGEERLLWLYEEVEKPLSRVLARMEATGVRLDV-AYL 455
Query: 1763 QARNL-LQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLP-IPEGHNKGKQHPST 1820
QA +L ++ ++R LE++ + LAG F+L + + VL+ L LP I + GK+ ST
Sbjct: 456 QALSLEVEAEVRQLEEEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKR--ST 513
Query: 1821 DKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTA 1880
L+ LR HPIV I ++R L KL N + + +L + + LH + QT+TA
Sbjct: 514 SAAVLEALREAHPIVDRILQYRELTKLKNTYIDPLPAL----VHPKTGRLHTRFNQTATA 569
Query: 1881 TGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYS 1940
TGRLS +PNLQ + V + R F+ ++E W+L+ DYS
Sbjct: 570 TGRLSSSDPNLQNIP--VRTPLGQ---------------RIRRAFV-AEEGWVLVVLDYS 611
Query: 1941 QIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILY 2000
QIELR++AH S D LI + + D+ T A+ G S + V R K + +G+LY
Sbjct: 612 QIELRVLAHLSGDENLIRVFQEGR-DIHTQTASWMFGVSPEGVDPLMRRAAKTINFGVLY 670
Query: 2001 GMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLS 2060
GM + LS +L+ EA I+ + S+P V +W+ + ++GYVE+L GR+R++
Sbjct: 671 GMSAHRLSGELSIPYEEAVAFIERYFQSYPKVRAWIEGTLEEGRRRGYVETLFGRRRYVP 730
Query: 2061 KIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLK 2120
+ + A+R A N QG+AAD++K+AM+ + Q L
Sbjct: 731 DLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVRLFP---------------RLQELG 775
Query: 2121 GRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGS 2175
R+LLQVHDELVLE + +L ++ ME L VPL V++ +G W S
Sbjct: 776 --ARMLLQVHDELVLEAPKDRAERVAALAKEVMEGVWPLQVPLEVEVGLGEDWLS 828
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 199/776 (25%), Positives = 341/776 (43%), Gaps = 127/776 (16%)
Query: 513 ICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKM 572
I + KKRGIS+LYP Q E L G+L+ N + T++GK+ +AEI ++ RL+ G
Sbjct: 12 IKEVLKKRGISELYPPQAEAL-TSGILKGENALIAIPTASGKTLIAEIAIVNRLLKEGGK 70
Query: 573 ALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQG------GGSLPKDTSVAVCTIEK 626
A+ ++P ++ EK + + E LG V G+ GG + + T EK
Sbjct: 71 AVYLVPLKALAEEKFKEFKDW-EELGLKVAMATGDYDSKDEWLGGY-----DIIIATAEK 124
Query: 627 ANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGEN 686
+SL+ + + ++V+DE+H++ ++RG LE ++T++ A
Sbjct: 125 FDSLLRH--GSSWIRNVKVLVVDEIHLIGSRDRGATLEFIITQMLNRA------------ 170
Query: 687 SGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSK 746
QI+G+SAT+ N +A+WL A L ++++RPV L + ++ +
Sbjct: 171 --------------QIIGLSATIGNPEELAEWLNAKLIKSDWRPVKLRRGVFYQGFVFWE 216
Query: 747 KMDVVRTILTAANLGGKDP--DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLK 804
GK + EL + ++ L+F + R+ E TA +SK ++
Sbjct: 217 --------------DGKTEKFNSWEELVYDAIKRSKGSLVFVNMRRKAEKTALELSKKIR 262
Query: 805 KFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETC 864
F + E ++ ++L P + L + L GVA+HHAGL EER +VE
Sbjct: 263 NFL-----TKKELRELKELAESLEENPT--NEKLAKALQGGVAFHHAGLGREERVLVEEN 315
Query: 865 YRKGLVRVLTATSTLAAGVNLPARRVI----FRQPRIGRDFIDGTRYRQMAGRAGRTGID 920
++KGL++V+ AT TL+AG+N PA RVI +R G + I +QM GRAGR D
Sbjct: 316 FKKGLIKVVVATPTLSAGINTPAFRVIVRDTWRYSEFGMERIPILEIQQMMGRAGRPKYD 375
Query: 921 TKGESMLICKPEEVKKIMGLLNESCP-PLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIH 979
GE++++ EE +M + P L S LS +++ + IL ++A + +I+
Sbjct: 376 EVGEAIIVSTTEEPSTVMERYIKGKPEKLFSQLS-NESILRGQILALIATFNFSSFREIY 434
Query: 980 RYVRCTL--LNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLC 1037
++ T P+ + +D + +L +F+E D ++ PLG +
Sbjct: 435 DFLERTFYAYQGKDPYT-LEDRIRDIVYFLLENEFIEITLDDEI-KALPLGIRTAKLYID 492
Query: 1038 PEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGN 1097
P + I D L + + LH++ L+
Sbjct: 493 PMTAKIFKDTLPKIEKDPNPLGILHVISLT------------------------------ 522
Query: 1098 QVGVSEPYLMRMAHGA---PMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCK 1154
P L+ + +G PM L D +L + L + +
Sbjct: 523 ------PDLIPLPYGKKELPM-----LEDEYYSFKDRLYFELDWEDER--------KFLR 563
Query: 1155 RFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGW-YDLEG 1213
F AL+L+ + E P E+ E F V G + + E A + + L + D+
Sbjct: 564 AFKTALVLNAWINEVPEGEIVEKFNVEPGDIYRIVETAEWLVYSLKEIAKTLEYSQDVIN 623
Query: 1214 LIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKA 1269
+ + RV G+R E++ L +P + RARALY AG R +I A +E+++
Sbjct: 624 YLETLRVRVKHGIREELIPLMELPMIGRKRARALYNAGFRDLESIKNARPAELLEV 679
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 215/794 (27%), Positives = 361/794 (45%), Gaps = 136/794 (17%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
+P + Y GI +LYP Q C+ G+L +NL+ T++GK+ +AE+ M R + +
Sbjct: 8 IPEPLRQQYLGLGIRELYPPQAACVE-RGLLDGKNLLVAIPTASGKTLIAEMAMHRHIAN 66
Query: 569 TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQG------GGSLPK------D 616
GK L ++P ++ +EK E +GN+G G L +
Sbjct: 67 GGK-CLYIVPLKALASEKYEE---------------FGNKGVKVGLSTGDLDRRDDALGK 110
Query: 617 TSVAVCTIEKANSLVNRMLEEGR--LSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAA 674
+ V T EK +SL L G + +I ++VIDE+H++ +RG LE+++ K+R
Sbjct: 111 NDIIVATSEKVDSL----LRNGARWIPDITLVVIDEIHLIDSPDRGPTLEMVIAKMR--- 163
Query: 675 GEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLE 734
+P G+Q++G+SAT+ N +A WL A L +++RPV L
Sbjct: 164 ------------------SKNP--GMQLIGLSATIGNPKVLAGWLDAELVTSSWRPVDLR 203
Query: 735 EYIKVGNAI-YSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCE 793
+ + N I ++++M V+ + K+ D + LC + + EG L+F SSR+ E
Sbjct: 204 QGVFYDNRIQFAERMRPVKQV-------SKNYDDL-NLCLDTIAEGGQCLVFVSSRRNAE 255
Query: 794 STARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGL 853
+ F K+ + + S D+ + L P + L + G A+HHAGL
Sbjct: 256 A-------FAKRAAGAIKSEDAALAACAERL--LEGTPTEMVKTLAACVAKGAAFHHAGL 306
Query: 854 TVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ-----PRIGRDFIDGTRYR 908
+ +ER +VE +RK L++ +++T TLAAG+NLPARRVI R G I + YR
Sbjct: 307 SRKERSIVEEAFRKNLLKCISSTPTLAAGLNLPARRVIIRDYLRFSAGEGMQPIPVSEYR 366
Query: 909 QMAGRAGRTGIDTKGESMLICK-PEEVKKIMGLLNES-CPPLHSCLSEDKNGMTHAILEV 966
QMAGRAGR +D GE++LI K E+V ++ + E+ +HS ++E TH +L +
Sbjct: 367 QMAGRAGRPRLDPYGEAVLIAKEAEQVPELFEVYIEAEAEDVHSRIAEPTALYTH-VLSL 425
Query: 967 VAGGIVQTAEDIHRYV-RCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTT 1025
VA G T ++ ++ R ++ K + + ++ ++L++L + + E + T
Sbjct: 426 VASGFAGTRGELTEFMNRSFYVHEHKQGRLIHRAIDEALQFLITAEMV--VEVGEHIGAT 483
Query: 1026 PLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERF 1085
LG + P + ++ L R +E + +DL L+ L + PD Y +
Sbjct: 484 ELGTLVSRMYIDPRSAFAIVTTL-REQEKY---ADLGLIQL-----ICTTPDMPTLYAKN 534
Query: 1086 LELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLS 1145
+L AL + M GA + + L D + YR T
Sbjct: 535 ADLPALSR-------------MLEVRGADIWLPPPLDDDAAETY----YRAVKT------ 571
Query: 1146 DAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCER 1205
A++LS E ++CE + V G V + EN S R
Sbjct: 572 -------------AMLLSDWTDELSEEKICERYGVGPGDVFGMVENINWLLHATSQLA-R 617
Query: 1206 LGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISE 1265
+ G IA + + G+R E++ L + + RAR L+ G+ +P ++ +
Sbjct: 618 MFVPKFYGQIADCEICMKNGIRRELLPLVRLRGIGRVRARRLFNNGITSPEELSRHKKED 677
Query: 1266 IVKALFESSSWIAE 1279
+VK L S IAE
Sbjct: 678 LVKIL---GSGIAE 688
>sp|Q55971|DPO1_SYNY3 DNA polymerase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=polA PE=3 SV=1
Length = 986
Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 168/545 (30%), Positives = 255/545 (46%), Gaps = 71/545 (13%)
Query: 1653 IDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQM-----RRAAHNG 1707
+D + S++L P++ NL ++ A + G K+Q A
Sbjct: 485 LDTMLASYVLQPEETH----NLTDLCRRYNLGLVALSYKDLGLKKDQTIADLPLETAGQY 540
Query: 1708 CCRRVAQTRALCSVLWKLLVS-EELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARN 1766
C T L S L K L EL E L IE PL +LA ME GI +D +
Sbjct: 541 CGLDCYATYLLASKLQKELDQYPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQTLSQ 600
Query: 1767 LLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLD 1826
L + L +E AY AG F+L + + +L+ L L + K K STD L+
Sbjct: 601 QLAENLLTIETAAYEAAGESFNLSSPKQLGTILFDKLGLDRKKSR-KTKTGYSTDHATLE 659
Query: 1827 LLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSM 1886
L+ +HPI+ I EHRTLAKL + + ++ L ++ TQ+ +H + Q T+TGRLS
Sbjct: 660 KLQGDHPIIDAILEHRTLAKLKSTYVDALPEL--VNGQTQR--IHTDFNQAVTSTGRLSS 715
Query: 1887 EEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRL 1946
PNLQ + +F R F+P Q++W+L++ADYSQIELR+
Sbjct: 716 SNPNLQNIPIRSDFSR-----------------QIRRAFLP-QKDWLLVSADYSQIELRI 757
Query: 1947 MAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNT 2006
+AH S++P L+ DV + A G+ + + ER+ K + +G++YGMG
Sbjct: 758 LAHLSQEPVLLQAYGD-RQDVHGVTAKLLFGKED--ITPAERNLGKTINFGVIYGMGAQR 814
Query: 2007 LSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRF-------- 2058
+ + S+ E +E I + ++ V +L KGYV ++ GR+R+
Sbjct: 815 FARETGISAVEGREFIDRYHRTYAQVFDYLETMKLEAIAKGYVTTIVGRRRYFNFVTEAL 874
Query: 2059 ----------LSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKP 2108
L + N ++ R A N+ QGS+ADIIKIAM+ +
Sbjct: 875 RQLRGKTVTELDLVDVKMNYNDAQLLRSAANAPIQGSSADIIKIAMVKL----------- 923
Query: 2109 DSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQ 2168
+ L ++Q R+LLQVHDEL+ E+ P +E L+Q ME A L VPL+V++
Sbjct: 924 -AKLLESYQ-----TRMLLQVHDELIFEMPPEEWEELAPLIQNTMEQALTLSVPLVVEMH 977
Query: 2169 VGSTW 2173
GS W
Sbjct: 978 RGSNW 982
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 203/775 (26%), Positives = 348/775 (44%), Gaps = 127/775 (16%)
Query: 513 ICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKM 572
I I ++RGI +LYP Q E L GVL+ NL+ T++GK+ +AEI + +L+ G
Sbjct: 12 IKEILRERGIEELYPPQAEAL-TSGVLEGENLLVAIPTASGKTLIAEIAIANKLLEEGGK 70
Query: 573 ALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDT-----SVAVCTIEKA 627
A+ ++P ++ EK + E LG V G+ KD + + T EK
Sbjct: 71 AVYIVPLKALAEEKFREFKDW-ERLGLKVAMATGDYDS----KDEWLGKYDIIIATAEKF 125
Query: 628 NSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENS 687
+SL+ + ++ ++VIDE+H++ ++RG LE ++T++
Sbjct: 126 DSLLRH--GSSWIRDVKMLVIDEIHLIGSRDRGATLEFIITQM----------------- 166
Query: 688 GTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKK 747
G+A QI+G+SAT+ N +A+WL A L +++RPV L + + ++ +
Sbjct: 167 ---LGRA------QIIGLSATIGNPEELAEWLNAKLIRSDWRPVKLRKGVFYQGFVFWE- 216
Query: 748 MDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFS 807
+ G + + EL + V++G L+F + R+ E TA ++K +K +
Sbjct: 217 -----------DGGSERYNSWEELVYDAVKKGKGALVFVNMRRKAEKTALELAKKVKNYL 265
Query: 808 INVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRK 867
E ++ ++L P + L + L SGVA+HHAGL +ER +VE +RK
Sbjct: 266 -----DRKELRELRELAESLEENPT--NEKLAKALLSGVAFHHAGLGRDERVLVEDNFRK 318
Query: 868 GLVRVLTATSTLAAGVNLPARRVI----FRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKG 923
GL++V+ AT TL+AG+N PA RVI +R G + I +QM GRAGR D G
Sbjct: 319 GLIKVVVATPTLSAGINTPAFRVIIRDTWRYSEFGMERIPVLEVQQMMGRAGRPRYDEVG 378
Query: 924 ESMLICKPEEVKKIMGLLNESCP-PLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYV 982
E++++ EE ++ + P L S LS +++ + IL ++A ++I+ ++
Sbjct: 379 EAIIVSTTEEPSLVIDHYIKGKPEKLFSQLS-NESILRSQILALIATFGYSEFKEIYDFL 437
Query: 983 RCTLL--NSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEE 1040
T P+ + + + + +L +F+E + ++ PLG + P
Sbjct: 438 ERTFYAHQGKDPYM-LEEKIRRIIYFLLENEFIEVTLEDEI-KPLPLGVRTTKLYIDPMT 495
Query: 1041 SLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVG 1100
+ I D L R + H++ L+ PD L+ L S
Sbjct: 496 AKIFKDTLPRIEKNPNPLGIFHMISLA--------PD----------LTPLSYS------ 531
Query: 1101 VSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVAL 1160
R +S L D L +L + L + + + F AL
Sbjct: 532 --------------KRETSMLEDEYYSLMDRLYFELDYENER--------KFFRAFKTAL 569
Query: 1161 ILSRLVQETPVLEVCETFKVARGMVQALQENA-------GRFASMVSVFCERLGWYDLEG 1213
+L+ + E P E+ E F V G + + E A G A ++ E + +
Sbjct: 570 VLNAWINEVPEGEIVERFNVEPGDIYRIVETAEWLIYSLGEIAKVLEASQEVVDY----- 624
Query: 1214 LIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVK 1268
+ + RV G+R E++ L +P V RARALY AG + +I A SE+++
Sbjct: 625 -VNTLRLRVKHGIREELIPLMELPMVGRKRARALYNAGFKDLESIRNAKPSELLR 678
>sp|O32801|DPO1_LACLM DNA polymerase I OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=polA PE=3 SV=2
Length = 877
Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 156/469 (33%), Positives = 245/469 (52%), Gaps = 56/469 (11%)
Query: 1714 QTRALCSVLWKLLVSEELIE-----ALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLL 1768
+ R L K++ ELIE L ++E+PL VLA ME+ GI V +
Sbjct: 452 KIRVLARAKEKMMA--ELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEIGAEN 509
Query: 1769 QKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLL 1828
++KL L ++ Y LAG +F++ + + +L+ L+LP+ + K K ST L+ L
Sbjct: 510 EEKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGK---KTKTGYSTAVDVLEDL 566
Query: 1829 RHEHPIVPVIKEHRTLAKLLNCTL-GSICSLARISMSTQKYTLHGHWLQTSTATGRLSME 1887
P+V I E+R + K+ + + G I +A +H ++Q T TGRLS
Sbjct: 567 AALSPVVAKILEYRQINKVQSTYVKGLIPQIA------DDGKIHTRYVQDLTQTGRLSSV 620
Query: 1888 EPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLM 1947
+PNLQ + +E + KI R F+PSQ++ +LL++DYSQIELR++
Sbjct: 621 DPNLQNIPVRLE---------------EGRKI--RKAFVPSQDS-LLLSSDYSQIELRVL 662
Query: 1948 AHFSKDPALIGLLSKPHG-DVFTMIAARWTG--RSEDSVGSQERDQTKRLIYGILYGMGP 2004
AH S D LI HG D+ T A R G ++ED V + +R K + +G++YG+
Sbjct: 663 AHISADEHLIDAFK--HGADIHTSTAMRVFGIEKAED-VTANDRRNAKAVNFGVVYGISD 719
Query: 2005 NTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKF 2064
L+ L + +AK I+++ +PG+ +++ V KG+VE++ R+R + I
Sbjct: 720 FGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPDINA 779
Query: 2065 GNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCR 2124
N + A+R A+NS QGSAADI+KIAMIN+ D +L + + +
Sbjct: 780 RNFNVRGFAERTAINSPIQGSAADILKIAMINL-----------DKALTER----QSKSK 824
Query: 2125 LLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
LLLQVHDE++L+V +++ +LV++ ME A L VPL V G TW
Sbjct: 825 LLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELAVPLKVDDNTGKTW 873
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 200/773 (25%), Positives = 338/773 (43%), Gaps = 118/773 (15%)
Query: 513 ICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKM 572
I S K+RGI YP Q E L G+L+ +N + T++GK+ +AEI M+ R+++ G
Sbjct: 12 IKSTLKERGIESFYPPQAEALK-SGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGK 70
Query: 573 ALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDT-----SVAVCTIEKA 627
A+ ++P ++ EK + + E +G V G+ KD + + T EK
Sbjct: 71 AVYIVPLKALAEEKFQEFQDW-EKIGLRVAMATGDYDS----KDEWLGKYDIIIATAEKF 125
Query: 628 NSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENS 687
+SL+ + ++ I+V DE+H++ ++RG LE++L +
Sbjct: 126 DSLLRH--GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHM----------------- 166
Query: 688 GTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKK 747
GKA QI+G+SAT+ N +A+WL A L +++RPV L + + +
Sbjct: 167 ---LGKA------QIIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWED 217
Query: 748 MDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFS 807
+ R EL + +++ LIF + R+ E A +SK +K
Sbjct: 218 GSIDRF------------SSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLL 265
Query: 808 INVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRK 867
+ E + D+L P + L + + GVA+HHAGL +ER +VE +RK
Sbjct: 266 -----TKPEIRALNELADSLEENPT--NEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318
Query: 868 GLVRVLTATSTLAAGVNLPARRV----IFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKG 923
G+++ + AT TL+AG+N PA RV I+R G + I QM GRAGR D G
Sbjct: 319 GIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378
Query: 924 ESMLICKPEEVKKIMGLLNESCP-PLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYV 982
E +++ ++ +++M P L S LS + N + +L ++A T E+I +++
Sbjct: 379 EGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESN-LRSQVLALIATFGYSTVEEILKFI 437
Query: 983 RCTLL-NSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEES 1041
T K + + ++ L +L +F+E + + K+ + LG + P +
Sbjct: 438 SNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLS-LGIRTAKLYIDPYTA 496
Query: 1042 LIVLDDLSRAREGFVLASDLHLVYLS---TPINV---EVEPDWELYYERFLELSALDQSV 1095
+ D + + HL+ L+ TP N E E E YYE L D +
Sbjct: 497 KMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYI 556
Query: 1096 GNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKR 1155
+PYL R + +
Sbjct: 557 SGY----DPYLER------------------------------------------KFFRA 570
Query: 1156 FYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLI 1215
F AL+L + E P E+ E + V G + + E A + + LG Y++ +
Sbjct: 571 FKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYL 630
Query: 1216 AKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVK 1268
+ RV +G+R E++ L +P V RARALY +G R+ I++A E++K
Sbjct: 631 ETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLK 683
>sp|Q9HT80|DPO1_PSEAE DNA polymerase I OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1
/ 1C / PRS 101 / LMG 12228) GN=polA PE=3 SV=1
Length = 913
Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 241/462 (52%), Gaps = 44/462 (9%)
Query: 1715 TRALCSVLW-KLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGC-LQARNLLQKKL 1772
T L LW KL L L +IE+PLV VLA +E G VD +Q+R L +K+
Sbjct: 489 TLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSREL-GEKM 547
Query: 1773 RYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCL-DLLRHE 1831
LE++AY LAG +F+L + + +LY L LP+ G+ PST + L +L +
Sbjct: 548 VALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATGQ--PSTAEAVLAELAEQD 605
Query: 1832 HPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNL 1891
+ VI ++R+++KL + + +I+ T + +H + Q ATGRLS +PNL
Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPE--QINPRTGR--IHTSYHQAVAATGRLSSSDPNL 661
Query: 1892 QCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFS 1951
Q +I AE R F+ Q + LLAADYSQIELR+MAH +
Sbjct: 662 Q-------------NIPIRTAEGRRI----RQAFVAPQ-GYKLLAADYSQIELRIMAHLA 703
Query: 1952 KDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQL 2011
KD L+ + DV AA G + V +R K + +G++YGM L++Q+
Sbjct: 704 KDDGLLDAF-RHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQI 762
Query: 2012 NCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKS 2071
EA+ I + + +PGV +++ + ++G+VE+L GR+ +L +I N +
Sbjct: 763 GVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRK 822
Query: 2072 KAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHD 2131
A+R A+N+ QG+AADI+K AM+ + + + +S L A R++LQVHD
Sbjct: 823 AAERTAINAPMQGTAADIMKRAMVAVDN------WLQESGLDA---------RVILQVHD 867
Query: 2132 ELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTW 2173
ELVLEV ++++ ++ M AA L VPL+V+ VGS W
Sbjct: 868 ELVLEVREDLVEQVCEGIRPLMSGAATLDVPLVVEAGVGSNW 909
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 208 bits (529), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 213/778 (27%), Positives = 342/778 (43%), Gaps = 102/778 (13%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
LP + ++ G+ +LYP Q E + GV + NLV T++GK+ +A++ ML +
Sbjct: 9 LPGGVADHFEGEGVEELYPPQAEAVER-GVTEGANLVASVPTASGKTLIAQLAMLSAIAE 67
Query: 569 TGK--------MALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSV 619
G AL ++P ++ EKA+ E E G V GN + G+ D +
Sbjct: 68 GGDSPTFSGDGTALYIVPLRALAGEKAQEFEAF-ERFGLSVGVSTGNYERDGARLADNDI 126
Query: 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTS 679
V T EK +SLV G + ++ +V DE+H+V D +RG LE+ L KLR +
Sbjct: 127 VVATSEKVDSLVRNGA--GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVAD--- 181
Query: 680 DSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKV 739
LQ+V +SAT+ N +A WL A L ++++RP+ L +
Sbjct: 182 --------------------LQVVALSATVGNAGELAAWLDAELVDSDWRPIELRTGVHY 221
Query: 740 GNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV 799
G +++ T A L + + + + S L+F +SR+ E++AR +
Sbjct: 222 GQSLHYDDG-------TQAELSVGSGSQTAAVVADTLADDGSTLVFVNSRRNAEASARRL 274
Query: 800 SKFLKKFSINVHSSDSE-FIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEER 858
+ + S++ E DI + I + + L + + SG A+HHAGL E R
Sbjct: 275 ADVTGN---ALSSAERERLADIAAEIRGVSDTETSDE--LADAVASGAAFHHAGLAREHR 329
Query: 859 EVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ------PRIGRDFIDGTRYRQMAG 912
E+VE +R LV+ ++AT TLAAGVN PARRV+ R G +D QM G
Sbjct: 330 ELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQPLDVLEVHQMFG 389
Query: 913 RAGRTGIDTKGESMLICKP-EEVKKIMGLLNESCP-PLHSCLSEDKNGMTHAILEVVAGG 970
RAGR G+D GE++L+ +E++++ + P P+ S L+ + TH +L +A G
Sbjct: 390 RAGRPGLDPYGEAVLLANSHDELEELFDRYVYADPEPVRSKLAAEPALRTH-VLAAIATG 448
Query: 971 IVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQ-DSLRWLCHRKFLEWNEDTKLYSTTPLGR 1029
T + +H ++ TL + ++S D LR+L F+E D T G+
Sbjct: 449 FTTTEDGLHEFLGGTLYATQTDDTGRLRSVTGDVLRYLDRNGFVE--RDGAALRATATGQ 506
Query: 1030 AAFGSSLCPEESLIVLDDLSRAR--------EG-FVLASDLHLVYLSTPINVEVEPD-WE 1079
+ P + ++D L A EG F AS+L + P + VEP
Sbjct: 507 LVSRLYVDPMSAATIIDGLRDAARDATETDDEGAFRPASELG-DDAALPADASVEPTPLG 565
Query: 1080 LYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGIT 1139
LY+ V + E YL ++ + D G + E
Sbjct: 566 LYH-----------LVSRTPDMYELYLRSGDREQYTEVAYEHEDELLGATPREEQ---AE 611
Query: 1140 SNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMV 1199
+ LS +T R+ + L R + E + V G ++ E A +
Sbjct: 612 FEDWLSALKTARLMADWASELDEER---------IAERYDVGPGDIRGKVETAEWLLNA- 661
Query: 1200 SVFCERL-GWYDLE--GLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRT 1254
ERL G D+E + + + RV +GVR E++ L + V RAR LY AG+ +
Sbjct: 662 ---AERLAGELDVECGPAVREARKRVQYGVREELLGLAGVRNVGRKRARRLYNAGVES 716
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 208 bits (529), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 213/778 (27%), Positives = 342/778 (43%), Gaps = 102/778 (13%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
LP + ++ G+ +LYP Q E + GV + NLV T++GK+ +A++ ML +
Sbjct: 9 LPGGVADHFEGEGVEELYPPQAEAVER-GVTEGANLVASVPTASGKTLIAQLAMLSAIAE 67
Query: 569 TGK--------MALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSV 619
G AL ++P ++ EKA+ E E G V GN + G+ D +
Sbjct: 68 GGDSPTFSGDGTALYIVPLRALAGEKAQEFEAF-ERFGLSVGVSTGNYERDGARLADNDI 126
Query: 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTS 679
V T EK +SLV G + ++ +V DE+H+V D +RG LE+ L KLR +
Sbjct: 127 VVATSEKVDSLVRNGA--GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVAD--- 181
Query: 680 DSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKV 739
LQ+V +SAT+ N +A WL A L ++++RP+ L +
Sbjct: 182 --------------------LQVVALSATVGNAGELAAWLDAELVDSDWRPIELRTGVHY 221
Query: 740 GNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHV 799
G +++ T A L + + + + S L+F +SR+ E++AR +
Sbjct: 222 GQSLHYDDG-------TQAELSVGSGSQTAAVVADTLADDGSTLVFVNSRRNAEASARRL 274
Query: 800 SKFLKKFSINVHSSDSE-FIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEER 858
+ + S++ E DI + I + + L + + SG A+HHAGL E R
Sbjct: 275 ADVTGN---ALSSAERERLADIAAEIRGVSDTETSDE--LADAVASGAAFHHAGLAREHR 329
Query: 859 EVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ------PRIGRDFIDGTRYRQMAG 912
E+VE +R LV+ ++AT TLAAGVN PARRV+ R G +D QM G
Sbjct: 330 ELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQPLDVLEVHQMFG 389
Query: 913 RAGRTGIDTKGESMLICKP-EEVKKIMGLLNESCP-PLHSCLSEDKNGMTHAILEVVAGG 970
RAGR G+D GE++L+ +E++++ + P P+ S L+ + TH +L +A G
Sbjct: 390 RAGRPGLDPYGEAVLLANSHDELEELFDRYVYADPEPVRSKLAAEPALRTH-VLAAIATG 448
Query: 971 IVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQ-DSLRWLCHRKFLEWNEDTKLYSTTPLGR 1029
T + +H ++ TL + ++S D LR+L F+E D T G+
Sbjct: 449 FTTTEDGLHEFLGGTLYATQTDDTGRLRSVTGDVLRYLDRNGFVE--RDGAALRATATGQ 506
Query: 1030 AAFGSSLCPEESLIVLDDLSRAR--------EG-FVLASDLHLVYLSTPINVEVEPD-WE 1079
+ P + ++D L A EG F AS+L + P + VEP
Sbjct: 507 LVSRLYVDPMSAATIIDGLRDAARDATETDDEGAFRPASELG-DDAALPADASVEPTPLG 565
Query: 1080 LYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGIT 1139
LY+ V + E YL ++ + D G + E
Sbjct: 566 LYH-----------LVSRTPDMYELYLRSGDREQYTEVAYEHEDELLGATPREEQ---AE 611
Query: 1140 SNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMV 1199
+ LS +T R+ + L R + E + V G ++ E A +
Sbjct: 612 FEDWLSALKTARLMADWASELDEER---------IAERYDVGPGDIRGKVETAEWLLNA- 661
Query: 1200 SVFCERL-GWYDLE--GLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRT 1254
ERL G D+E + + + RV +GVR E++ L + V RAR LY AG+ +
Sbjct: 662 ---AERLAGELDVECGPAVREARKRVQYGVREELLGLAGVRNVGRKRARRLYNAGVES 716
>sp|P00582|DPO1_ECOLI DNA polymerase I OS=Escherichia coli (strain K12) GN=polA PE=1 SV=1
Length = 928
Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 144/437 (32%), Positives = 230/437 (52%), Gaps = 40/437 (9%)
Query: 1737 NIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIA 1796
NIE+PLV VL+ +E G+ +D + L +L LEKKA+ +AG +F+L + +
Sbjct: 528 NIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQ 587
Query: 1797 NVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSIC 1856
+L+ + P G PST + L+ L ++P+ VI E+R LAKL + +
Sbjct: 588 TILFEKQGIK-PLKKTPGGA-PSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLP 645
Query: 1857 SLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDH 1916
+ ++ + +H + Q TATGRLS +PNLQ + + NE+ G
Sbjct: 646 ----LMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNI------PVRNEE---GR----- 687
Query: 1917 CKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWT 1976
R FI + E++++++ADYSQIELR+MAH S+D L+ ++ D+ AA
Sbjct: 688 ---RIRQAFI-APEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAE-GKDIHRATAAEVF 742
Query: 1977 GRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWL 2036
G ++V S++R K + +G++YGM L+ QLN EA++ + + +PGV ++
Sbjct: 743 GLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYM 802
Query: 2037 HVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMIN 2096
+ ++GYVE+L GR+ +L IK N ++ A+R A+N+ QG+AADIIK AMI
Sbjct: 803 ERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIA 862
Query: 2097 IHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESA 2156
+ A Q + R R+++QVHDELV EV + + + ME+
Sbjct: 863 VD---------------AWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENC 907
Query: 2157 ALLLVPLLVKIQVGSTW 2173
L VPLLV++ G W
Sbjct: 908 TRLDVPLLVEVGSGENW 924
>sp|Q9CDS1|DPO1_LACLA DNA polymerase I OS=Lactococcus lactis subsp. lactis (strain IL1403)
GN=polA PE=3 SV=1
Length = 877
Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 150/443 (33%), Positives = 234/443 (52%), Gaps = 49/443 (11%)
Query: 1735 LLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAAD 1794
L ++E+PL VLA ME+ GI V + ++KL L ++ Y LAG +F++ +
Sbjct: 476 LSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLASLTREIYDLAGEEFNINSPKQ 535
Query: 1795 IANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTL-G 1853
+ +L+ L+LP+ + K K ST L+ L P+V I E+R + K+ + + G
Sbjct: 536 LGVILFEKLQLPVGK---KTKTGYSTAVDVLEDLAALSPVVAKILEYRQINKVQSTYVKG 592
Query: 1854 SICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAE 1913
I +A +H ++Q T TGRLS +PNLQ + +E
Sbjct: 593 LIPQIA------DDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLE-------------- 632
Query: 1914 VDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHG-DVFTMIA 1972
+ KI R F+PS+++ +LL++DYSQIELR++AH S D LI HG D+ T A
Sbjct: 633 -EGRKI--RKAFVPSKDS-LLLSSDYSQIELRVLAHISGDEHLIDAFK--HGADIHTSTA 686
Query: 1973 ARWTG--RSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFP 2030
R G ++ED V + +R K + +G++YG+ L+ L + +AK I+++ +P
Sbjct: 687 MRVFGIEKAED-VTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYP 745
Query: 2031 GVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADII 2090
G+ +++ V KG+VE++ R+R + I N + A+R A+NS QGSAADI+
Sbjct: 746 GIKTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADIL 805
Query: 2091 KIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQ 2150
KIAMIN+ D +L+A + +LLLQVHDE++L+V + E LV+
Sbjct: 806 KIAMINL-----------DKALSAR----DFKSKLLLQVHDEIILDVPLEELDEIKVLVK 850
Query: 2151 KCMESAALLLVPLLVKIQVGSTW 2173
+ ME A L VPL V G TW
Sbjct: 851 QTMEEAIELAVPLKVDENTGKTW 873
>sp|Q9F173|DPO1_SALTY DNA polymerase I OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=polA PE=3 SV=2
Length = 928
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 144/437 (32%), Positives = 229/437 (52%), Gaps = 40/437 (9%)
Query: 1737 NIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIA 1796
NIE+PLV VL+ +E G+ +D + + +L LEKKA+ +AG F+L + +
Sbjct: 528 NIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQ 587
Query: 1797 NVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSIC 1856
+L+ + P G PST + L+ L ++P+ VI E+R LAKL + +
Sbjct: 588 TILFEKQGIK-PLKKTPGGA-PSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLP 645
Query: 1857 SLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDH 1916
+ ++ + +H + Q TATGRLS +PNLQ + + NE+ G
Sbjct: 646 ----LMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNI------PVRNEE---GR----- 687
Query: 1917 CKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWT 1976
R FI + E++++++ADYSQIELR+MAH S+D L+ ++ D+ AA
Sbjct: 688 ---RIRQAFI-APEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAE-GKDIHRATAAEVF 742
Query: 1977 GRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWL 2036
G DSV ++R K + +G++YGM LS QLN EA++ + + +PGV ++
Sbjct: 743 GLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLEYM 802
Query: 2037 HVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMIN 2096
+ ++GYVE+L+GR+ +L IK N ++ A+R A+N+ QG+AADIIK AMI
Sbjct: 803 ERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQGTAADIIKRAMIA 862
Query: 2097 IHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESA 2156
+ A Q + R R+++QVHDELV EV + + + ME+
Sbjct: 863 VD---------------AWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENC 907
Query: 2157 ALLLVPLLVKIQVGSTW 2173
+ VPLLV++ G W
Sbjct: 908 TRIDVPLLVEVGSGENW 924
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 205 bits (521), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 163/553 (29%), Positives = 265/553 (47%), Gaps = 62/553 (11%)
Query: 498 MLKDCLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFV 557
M K D+ SW +E ++ K G+ +L+ Q L GV + NLV A T +GK+F+
Sbjct: 1 MSKGLYDIPSWATTETRTLAKLAGVERLFEPQYMALQA-GVEKGENLVVAAPTGSGKTFI 59
Query: 558 AEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDT 617
A + ++ L G A ++P S+ EK +L +G ++ G+ G P +
Sbjct: 60 ALVAIVNSLARAGGRAFYLVPLKSVAYEKYTSFSILSR-MGLKLKISVGDFREG--PPEA 116
Query: 618 SVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEG 677
V + T EK +SL+ R + ++++DE+H V+D RG +LE +++++ +AGE
Sbjct: 117 PVVIATYEKFDSLLRVSPSLAR--NVSVLIVDEIHSVSDPKRGPILESIVSRMLASAGEA 174
Query: 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYI 737
Q+VG+SAT+PN +A+W+ + E+++RPVPL EY+
Sbjct: 175 -----------------------QLVGLSATVPNAGEIAEWIGGKIVESSWRPVPLREYV 211
Query: 738 KVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTAR 797
+YS + R + L + ++L E +++G L+F SR+ + A+
Sbjct: 212 FKEYKLYSPTGGL-REVPRVYGL------YDLDLAAEAIEDGGQALVFTYSRRRAVTLAK 264
Query: 798 HVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857
+K L + S E ++ P + L + +G+AYHHAGL
Sbjct: 265 RAAKRLGR-----RLSSREARVYSAEASRAEGAPRSVAEELASLIAAGIAYHHAGLPPSL 319
Query: 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVI----FRQPRIGRDFIDGTRYRQMAGR 913
R+ VE +R G V+V+ +T TLAAGVNLPARRV+ +R R+ I Y+QMAGR
Sbjct: 320 RKTVEEAFRAGAVKVVYSTPTLAAGVNLPARRVVIDSYYRYEAGFREPIRVAEYKQMAGR 379
Query: 914 AGRTGIDTKGESMLIC----KPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAG 969
AGR G+D GE++++ +PE++ I G + + S L+ G+ H IL +VA
Sbjct: 380 AGRPGLDEFGEAIIVAERLDRPEDL--ISGYIRAPPERVESRLA-GLRGLRHFILGIVAP 436
Query: 970 GIVQTAEDIHRYVRCTL--LNSTKPFQDVVKSAQDSLRW-LCHRKFLEWNEDTKLYSTTP 1026
+ I + TL L P + + ++ +D W L K W + T
Sbjct: 437 EGEVSIGSIEKVSGLTLYSLQRGLPRETIARAVEDLSAWGLVEVK--GWR-----IAATS 489
Query: 1027 LGRAAFGSSLCPE 1039
LGR L PE
Sbjct: 490 LGREVAAVYLDPE 502
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 204 bits (518), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 156/491 (31%), Positives = 245/491 (49%), Gaps = 52/491 (10%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
LP + Y GI +LYP Q E + G+L +NL+ T++GK+ +AE+ ML+ +
Sbjct: 8 LPQALKDFYTGSGIPELYPPQAEAIR-QGLLDGKNLLAAIPTASGKTLLAEMAMLKSIAE 66
Query: 569 TGKMALLVLPYVSICAEKAEHL----EVLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCT 623
GK A+ ++P ++ +EK + ++ ++P G V G+ + + V T
Sbjct: 67 GGK-AIYIVPLKALASEKYDRFLEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVAT 125
Query: 624 IEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSS 683
EK +SL+ LS + ++V DE+H++ NRG LE+ L KLR
Sbjct: 126 SEKTDSLLRN--GASWLSGLSVVVADEVHLIDSPNRGPTLEVTLAKLRKIN--------- 174
Query: 684 GENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAI 743
LQI+ +SAT+ N A+A W+ AAL ++ +RP L+E + G AI
Sbjct: 175 --------------VNLQILALSATIGNAKALAKWMDAALVQSEWRPTTLKEGVFYGRAI 220
Query: 744 YSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFL 803
KK RT+ A PD + L + ++EG L+F ++RK ES A+ V++ L
Sbjct: 221 TFKKEK--RTVNNAG------PDEVNSLVADTLEEGGQCLVFANTRKSSESIAQKVARSL 272
Query: 804 KKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVET 863
K + ++ E + D LR L E + +GVA+HHAGL E R +VE
Sbjct: 273 SK---KLQPAEKEQLAKLKQ-DVLRHAETDTCEKLAECVGNGVAFHHAGLKGEHRRIVED 328
Query: 864 CYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR-----IGRDFIDGTRYRQMAGRAGRTG 918
+R+ +++V+ T TLAAG+NLPARRVI R + G I Y+QMAGRAGR
Sbjct: 329 GFRQNILKVIACTPTLAAGLNLPARRVIIRDYKRFDVNYGSVPIPVLEYKQMAGRAGRPR 388
Query: 919 IDTKGESMLICKP-EEVKKIM-GLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAE 976
+D GE++LI K +E ++M +N + S L + HA L VA ++ +
Sbjct: 389 LDPYGEAVLIAKNYDEFGELMENYINADPEHITSKLGTEPAMRAHA-LSAVATDFCRSRQ 447
Query: 977 DIHRYVRCTLL 987
D+ ++ T
Sbjct: 448 DLKAFMDTTFF 458
>sp|P0A550|DPO1_MYCTU DNA polymerase I OS=Mycobacterium tuberculosis GN=polA PE=3 SV=1
Length = 904
Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/446 (31%), Positives = 220/446 (49%), Gaps = 51/446 (11%)
Query: 1734 ALLN-IEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTA 1792
ALL +E+P+ VLA ME GI VD+ + ++ ++R + AY + G + +L +
Sbjct: 499 ALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSP 558
Query: 1793 ADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLL--RHEHPIVPVIKEHRTLAKL--- 1847
+ VL+ L +P + K +TD L L + HP + + HR + +L
Sbjct: 559 KQLQVVLFDELGMP---KTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT 615
Query: 1848 LNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDI 1907
++ L ++ + RI H + QT ATGRLS EPNLQ + +
Sbjct: 616 VDGLLQAVAADGRI---------HTTFNQTIAATGRLSSTEPNLQNIPIRTD-------- 658
Query: 1908 YGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDV 1967
RD F+ L+ ADYSQIE+R+MAH S D LI + D+
Sbjct: 659 ---------AGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE-DL 708
Query: 1968 FTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKS 2027
+ +A+R G D V + R + K + YG+ YG+ LS+QL S+ EA E++ ++ +
Sbjct: 709 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFA 768
Query: 2028 SFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAA 2087
F GV +L V + GY ++ GR+R+L ++ N + + A+R A+N+ QGSAA
Sbjct: 769 RFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 828
Query: 2088 DIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVS 2147
DIIK+AMI + + ++ LA R+LLQVHDEL+ E+ P + +
Sbjct: 829 DIIKVAMIQVDKAL------NEAQLA---------SRMLLQVHDELLFEIAPGERERVEA 873
Query: 2148 LVQKCMESAALLLVPLLVKIQVGSTW 2173
LV+ M A L VPL V + G +W
Sbjct: 874 LVRDKMGGAYPLDVPLEVSVGYGRSW 899
>sp|P0A551|DPO1_MYCBO DNA polymerase I OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=polA PE=3 SV=1
Length = 904
Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/446 (31%), Positives = 220/446 (49%), Gaps = 51/446 (11%)
Query: 1734 ALLN-IEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTA 1792
ALL +E+P+ VLA ME GI VD+ + ++ ++R + AY + G + +L +
Sbjct: 499 ALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSP 558
Query: 1793 ADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLL--RHEHPIVPVIKEHRTLAKL--- 1847
+ VL+ L +P + K +TD L L + HP + + HR + +L
Sbjct: 559 KQLQVVLFDELGMP---KTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT 615
Query: 1848 LNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDI 1907
++ L ++ + RI H + QT ATGRLS EPNLQ + +
Sbjct: 616 VDGLLQAVAADGRI---------HTTFNQTIAATGRLSSTEPNLQNIPIRTD-------- 658
Query: 1908 YGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDV 1967
RD F+ L+ ADYSQIE+R+MAH S D LI + D+
Sbjct: 659 ---------AGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE-DL 708
Query: 1968 FTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKS 2027
+ +A+R G D V + R + K + YG+ YG+ LS+QL S+ EA E++ ++ +
Sbjct: 709 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFA 768
Query: 2028 SFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAA 2087
F GV +L V + GY ++ GR+R+L ++ N + + A+R A+N+ QGSAA
Sbjct: 769 RFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 828
Query: 2088 DIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVS 2147
DIIK+AMI + + ++ LA R+LLQVHDEL+ E+ P + +
Sbjct: 829 DIIKVAMIQVDKAL------NEAQLA---------SRMLLQVHDELLFEIAPGERERVEA 873
Query: 2148 LVQKCMESAALLLVPLLVKIQVGSTW 2173
LV+ M A L VPL V + G +W
Sbjct: 874 LVRDKMGGAYPLDVPLEVSVGYGRSW 899
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3 SV=1
Length = 704
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 206/758 (27%), Positives = 336/758 (44%), Gaps = 106/758 (13%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
L +I I K+RGI L P Q E + G+L + L+ + T++GK+ +AE+ M+ L+S
Sbjct: 11 LDIKIIDILKRRGIRTLNPPQSEAIR-KGLLDGKRLLVTSPTASGKTLIAELGMINYLLS 69
Query: 569 TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDTSVAVCTIEKA 627
G A+ + P ++ EK + E LG G+ + ++ + V T EK
Sbjct: 70 KGGKAIYITPLRALTNEKYNTFKDW-ETLGIKTGMTSGDYDTDDAWLENYDIIVTTYEKL 128
Query: 628 NSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENS 687
+SL + L+E+ V+DE H + D RG +E + + +
Sbjct: 129 DSLWRH--KAKWLNEVSYFVLDEFHYLNDPERGPTVESVAIRAK---------------- 170
Query: 688 GTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKK 747
G+ ++G+SAT+ N +A+WL A L TN+RPVPL+E I IY +K
Sbjct: 171 ---------KRGI-VLGLSATISNGKEIANWLNAELVATNWRPVPLKEGI-----IYPEK 215
Query: 748 MDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFS 807
V + D I+ ++V +G VL+F SSRK E+TAR + +++
Sbjct: 216 KGFVVVYKDNTSRKVYGDDAIIAYTLDIVSKGGQVLVFRSSRKLAENTARKIVQYMN--- 272
Query: 808 INVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRK 867
V D + ++I I + + L + GVAYHHAGL+ R+++E+ +R
Sbjct: 273 -FVKLEDKKLLEIARKIKEVEDAGSNEKEDLYNLVLRGVAYHHAGLSKGLRDIIESSFRD 331
Query: 868 GLVRVLTATSTLAAGVNLPARRV----IFRQPR--IG-RDFIDGTRYRQMAGRAGRTGID 920
+++V+ AT TLAAGVNLPAR V I+R R +G D I Y+QM+GRAGR G D
Sbjct: 332 RILKVIVATPTLAAGVNLPARAVVIGDIYRYNRKVVGYMDLIPVMDYKQMSGRAGRPGFD 391
Query: 921 TKGESMLIC--KPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDI 978
GE++++ K E K L P+ S L + + ++ ++A +T E++
Sbjct: 392 ENGEAVVVVRNKREAEKVYERYLMSDVEPIESKLGSE-SAFYSFLISIIASEGEKTTEEL 450
Query: 979 HRYVRCTLLNSTKPFQDVVKSAQDSLRWLC-HRKFLEWNEDTKLYSTTPLGRAAFGSSLC 1037
YV+ TLL P + K + L WL H F E ++ L T GR +
Sbjct: 451 MEYVKETLL----PKELAKKYFRSGLDWLLQHDIFAEISDKITL---TRFGRRISDLYIN 503
Query: 1038 PEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGN 1097
P ++ + + L + +G +A LHL+ + PD E AL +
Sbjct: 504 PFTAVTIREALEKNEKGCEIAY-LHLLAYT--------PDGPSIGVSRAEEDALIDELNC 554
Query: 1098 QVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFY 1157
++ V EP + EY +N +S +
Sbjct: 555 ELFVDEP--------------------------EDEYEF----SNYISALK--------- 575
Query: 1158 VALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAK 1217
VA I+ V E + + + G ++A+ + L D + ++ +
Sbjct: 576 VAYIVYDWVNEIDEDTILGKYGIGSGDLRAIIDTMDWLTYSGYHVASVLELKDHKDILEE 635
Query: 1218 FQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTP 1255
RV GV+ E++EL IP + RAR LY+ ++ P
Sbjct: 636 LHARVKDGVKPELIELVKIPGIGRVRARLLYQHDIKKP 673
>sp|P46835|DPO1_MYCLE DNA polymerase I OS=Mycobacterium leprae (strain TN) GN=polA PE=3
SV=1
Length = 911
Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 148/479 (30%), Positives = 238/479 (49%), Gaps = 64/479 (13%)
Query: 1712 VAQTRALCSVLWKLLVSEELIEA---LLNIEIPLVNVLADMELWGIGVDMEGCLQARNLL 1768
+ + RA+ + L +LI++ L +E+P+ VLADME GI D+ + ++
Sbjct: 479 ILRARAVVDLAAALDAELDLIDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQF 538
Query: 1769 QKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLL 1828
++R + AY + G + +L + + VL+ L +P + + K +TD L L
Sbjct: 539 GDQIRDAAEAAYAVIGKQINLSSPKQLQVVLFEELGMPKTK---RTKTGYTTDADALQSL 595
Query: 1829 --RHEHPIVPVIKEHRTLAKL---LNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGR 1883
+ EHP + + HR + +L ++ L ++ + RI H + QT TGR
Sbjct: 596 FCKTEHPFLQHLLTHRDVTRLKVTVDGLLNAVAADGRI---------HTTFNQTIATTGR 646
Query: 1884 LSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINA----RDFFIPSQEN---WILLA 1936
LS EPNLQ + + NA RD F+ EN L+
Sbjct: 647 LSSTEPNLQNIP---------------------IRTNAGRQIRDAFVVGSENNGYTELMT 685
Query: 1937 ADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIY 1996
ADYSQIE+R+MAH S+D LI D+ + +A+R G + + + R + K + Y
Sbjct: 686 ADYSQIEMRIMAHLSRDEGLIEAFHTGE-DLHSFVASRAFGIPIEDITPELRRRVKAMSY 744
Query: 1997 GILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRK 2056
G+ YG+ L+ QL S+ EAK +++ + + F GV +L V + GY ++ GR+
Sbjct: 745 GLAYGLSAYGLATQLKISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVLGRR 804
Query: 2057 RFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANF 2116
R+L ++ N + + A+R A+N+ QGSAADIIK+AMI + D SL
Sbjct: 805 RYLPELDSSNRQIREAAERAALNAPIQGSAADIIKVAMIAV-----------DKSL---- 849
Query: 2117 QMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGS 2175
+ K R+LLQVHDEL+ EV ++ ++V++ M SA L VPL V + G +WG+
Sbjct: 850 KQAKLASRMLLQVHDELLFEVAIGEREQIEAMVREQMGSAYPLDVPLEVSVGFGRSWGA 908
>sp|O51498|DPO1_BORBU DNA polymerase I OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=polA PE=3 SV=1
Length = 908
Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 136/439 (30%), Positives = 219/439 (49%), Gaps = 42/439 (9%)
Query: 1738 IEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIAN 1797
IE+P V+ +ME GI +D E + L K+L +E + G+ F+L + +
Sbjct: 511 IEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIKSIGIDFNLNSPKQMHE 570
Query: 1798 VLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICS 1857
+L+ L L +PE K STD L+ LR +H + + ++R +AKL + ++
Sbjct: 571 ILFEKLNLKLPEKMKKD----STDIKVLESLREQHESIENLIKYRQIAKLKSTYTDNLIE 626
Query: 1858 LARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHC 1917
L I+ T + LH ++QT TATGR++ PNLQ + D
Sbjct: 627 L--INYKTNR--LHTSFIQTKTATGRITSINPNLQNIPIK-----------------DEK 665
Query: 1918 KINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTG 1977
R F P N I ++ADYSQIEL ++AH S+D LI + D+ T A++
Sbjct: 666 GRKIRKAFKPENGN-IFISADYSQIELAILAHLSQDEVLIKAFEN-NKDIHTETASKLFK 723
Query: 1978 RSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLH 2037
E + R K + +GI+Y M L+++L + EAK I S+ S+P + ++
Sbjct: 724 IEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFDSYPKIKEFII 783
Query: 2038 VAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINI 2097
++ GY E++ R+R++ +I N E+S A+R A+NSI QGSAADI+KIAM+ +
Sbjct: 784 NQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAADIMKIAMVKV 843
Query: 2098 HSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAA 2157
+ F+ K ++LLQVHDE+++E E +++ ME+A
Sbjct: 844 FN---------------EFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY 888
Query: 2158 LLLVPLLVKIQVGSTWGSL 2176
L +PL I+ G +WG +
Sbjct: 889 TLNLPLRANIETGKSWGEI 907
>sp|P52027|DPO1_DEIRA DNA polymerase I OS=Deinococcus radiodurans (strain ATCC 13939 / DSM
20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 /
R1 / VKM B-1422) GN=polA PE=3 SV=2
Length = 956
Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 220/437 (50%), Gaps = 43/437 (9%)
Query: 1738 IEIPLVNVLADMELWGIGVDMEGCLQARNLLQK-KLRYLEKKAYTLAGMKFSLYTAADIA 1796
+E PL VL ME+ G+ VD + LQ ++ +L LE + + AG +F + + +
Sbjct: 558 MEKPLSGVLGRMEVRGVQVDSD-FLQTLSIQAGVRLADLESQIHEYAGEEFHIRSPKQLE 616
Query: 1797 NVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSIC 1856
VLY L+L + Q ST L+ LR HPI+P++ E R L KL L I
Sbjct: 617 TVLYDKLELASSKKTKLTGQR-STAVSALEPLRDAHPIIPLVLEFRELDKLRGTYLDPIP 675
Query: 1857 SLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDH 1916
+L ++ LH + QT+ ATGRLS PNLQ + + ++ E
Sbjct: 676 NL----VNPHTGRLHTTFAQTAVATGRLSSLNPNLQNIP--IRSELGRE----------- 718
Query: 1917 CKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWT 1976
R FI +++ + L+AADYSQIELRL+AH + DP + + D+ AA+
Sbjct: 719 ----IRKGFI-AEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVE-GADIHRRTAAQVL 772
Query: 1977 GRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWL 2036
G E +V + +R K + +G+LYGM + LS L EA I+ + +++PG+ ++
Sbjct: 773 GLDEATVDANQRRAAKTVNFGVLYGMSAHRLSNDLGIPYAEAATFIEIYFATYPGIRRYI 832
Query: 2037 HVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMIN 2096
+ + GYVE+L GR+R++ + N ++ +R A N QG+AADI+K+AM+
Sbjct: 833 NHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERLAYNMPIQGTAADIMKLAMVQ 892
Query: 2097 IHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESA 2156
+ + Q+ R+LLQVHDEL++E ++ +L +K ME+
Sbjct: 893 L-----------------DPQLDAIGARMLLQVHDELLIEAPLDKAEQVAALTKKVMENV 935
Query: 2157 ALLLVPLLVKIQVGSTW 2173
L VPL V++ G W
Sbjct: 936 VQLKVPLAVEVGTGPNW 952
>sp|P74933|DPO1_TREPA DNA polymerase I OS=Treponema pallidum (strain Nichols) GN=polA PE=3
SV=2
Length = 997
Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 219/449 (48%), Gaps = 48/449 (10%)
Query: 1731 LIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLY 1790
L+ IE+PL+ +LA ME GI + + Q ++ E ++LAG +F++
Sbjct: 593 LLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGHEFNIG 652
Query: 1791 TAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNC 1850
+ + VL+ L LP + + +G STD L L +HPI I R L+KL +
Sbjct: 653 SPKQLQTVLFQELHLPPGKKNTQGY---STDHSVLKKLARKHPIAEKILLFRDLSKLRST 709
Query: 1851 TLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGG 1910
S+ LA Q +H ++Q TATGRLS PNLQ + ++ +
Sbjct: 710 YTESLAKLA-----DQTGRVHTSFVQIGTATGRLSSRNPNLQNIP--IKSTEGRKIRQAF 762
Query: 1911 NAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTM 1970
A V H L++ADY+QIEL ++AH S+D L+ + H D+ +
Sbjct: 763 QATVGH----------------ELISADYTQIELVVLAHLSQDRNLLNAF-RQHIDIHAL 805
Query: 1971 IAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFP 2030
AA S D V R K + +GI+YGM LS++L S EA+ I + ++P
Sbjct: 806 TAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYFETYP 865
Query: 2031 GVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADII 2090
GV ++ + GYV SL GR+R++ I N E+++A+R A+N+ Q SAADI+
Sbjct: 866 GVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIV 925
Query: 2091 KIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLE---VDPSVIKEAVS 2147
KIAMI I F R +LLLQVHDEL+ E + +++KE
Sbjct: 926 KIAMIAIQR---------------AFARRPLRAQLLLQVHDELIFEAPAAETAIVKE--- 967
Query: 2148 LVQKCMESAALLLVPLLVKIQVGSTWGSL 2176
++ ME A L +PL + ++ G++WG
Sbjct: 968 ILFAEMEHAVELSIPLRIHVESGNSWGDF 996
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 194 bits (492), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 157/496 (31%), Positives = 248/496 (50%), Gaps = 74/496 (14%)
Query: 519 KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578
KRGI LYP Q E + G+L N++ ++T++GK+ +AE+ + ++ K +L+ +P
Sbjct: 19 KRGIRTLYPPQEEAIRA-GLLNGENILMVSATASGKTLLAEVAAVNNVLVNDKKSLVAVP 77
Query: 579 YVSICAEKAEHLEVLLEPLGRHVRSYYGNQGG-----GSLPKDTSVAVCTIEKANSLVNR 633
++ EK E LG V + G+ GS V + T EK +SL+
Sbjct: 78 LKALAFEKLNDFNTYSE-LGIRVAASTGDYNSEDKWLGSY----DVIITTYEKLDSLLR- 131
Query: 634 MLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGK 693
L+ + +G ++IDE+H + D RG ++E ++ KLR
Sbjct: 132 -LKPSWIWNVGQLIIDEIHFINDDERGPIIESIVAKLRML-------------------N 171
Query: 694 ADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753
+P QI+G+SAT+ N +A+WL A L ++++RPV L E +Y K
Sbjct: 172 LNP----QIIGLSATIGNPEELANWLNAKLVKSDWRPVSLRE------GVYHKG------ 215
Query: 754 ILTAANLGGK----DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSIN 809
++T N G K D ++ L + + +G VL+F SSR+G AR ++++
Sbjct: 216 VVTYVNDGEKRISGQGDSLINLTVDTLNDGGQVLVFSSSRQGAVRIARKLAEY------- 268
Query: 810 VHSSDSEFIDITSA---IDALRRCPAG--LDPVLEETLPSGVAYHHAGLTVEEREVVETC 864
+ SS +ID A + +R + L L + GV++HHAGL +E R V+E
Sbjct: 269 ICSSPVRYIDPGEAGKLAEEVRETSSSRILAEELTGLIKCGVSFHHAGLELEVRRVIEEG 328
Query: 865 YRKGLVRVLTATSTLAAGVNLPARRVI---FRQPRIGRDFID--GTRYRQMAGRAGRTGI 919
+R+G++RVL +T+TLAAGVNLPARRVI +R+ G FI+ Y+QMAGRAGR G+
Sbjct: 329 FRRGVLRVLASTTTLAAGVNLPARRVIVNEYRRYEPGYGFIEIPVMEYKQMAGRAGRPGL 388
Query: 920 DTKGESMLICKP-EEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDI 978
D GE+++I +EV ++ +S P + + L VA Q AE I
Sbjct: 389 DPYGEAIIIVSSKDEVDYVIDKYIKSPPEYVKSNFMNPTSLKFHTLSAVAS---QYAETI 445
Query: 979 HRYVRCTLLNSTKPFQ 994
V+ T N+ FQ
Sbjct: 446 DELVKFT-SNTFAGFQ 460
Score = 42.7 bits (99), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 1156 FYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYD--LEG 1213
F A+ L + E+ ++ +T+ V G ++ L + A + LG + G
Sbjct: 593 FKTAMALLEWINESNEDQIMKTYDVQPGDLRVLSDQAEWLIGALQELARTLGLSGNVVNG 652
Query: 1214 LIAKFQNRVSFGVRAEIVELTT-IPYVKGSRARALYKAGLRTPLAIAEASISEIVK 1268
L A + RV +GV E++EL + V RARALY AG R+ +A+A++S++ +
Sbjct: 653 LRA-LRYRVKYGVNDELLELVVNLEGVGRVRARALYAAGYRSIEDLAKANVSDLTR 707
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 216/794 (27%), Positives = 356/794 (44%), Gaps = 77/794 (9%)
Query: 499 LKDCLDLSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVA 558
+ D + WLP + + GI +LYP Q E + GV + NLV T++GK+ +A
Sbjct: 3 VADLPGVPEWLPDHL----RDDGIEELYPPQAEAVEA-GVTEGENLVASIPTASGKTLIA 57
Query: 559 EILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN-QGGGSLPKDT 617
E+ ML + GK AL ++P ++ +EK E E G + GN + G D
Sbjct: 58 ELAMLSSVARGGK-ALYIVPLRALASEKQADFEEF-EQYGLDIGVSTGNYESEGGWLADK 115
Query: 618 SVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEG 677
+ V T EK +SLV + + ++ +V DE+H+V D RG LE+ L KLR
Sbjct: 116 DIVVATSEKVDSLVRN--DAPWIEDLTCVVTDEVHLVDDGERGPTLEVTLAKLR------ 167
Query: 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYI 737
+ +P LQ V +SAT+ N A+A WL A L ++++RP+ L++ +
Sbjct: 168 ---------------RLNP--DLQTVALSATIGNAEALATWLDAGLVDSDWRPIDLQKGV 210
Query: 738 KVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTAR 797
G A++ + D + L+ N + + + +++ S L+F +SR+ E+ A
Sbjct: 211 HYGQALHLE--DGSQQRLSVQN----NEKQTAAIVRDTLEDDGSTLVFVNSRRNAEAAAG 264
Query: 798 HVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857
++ ++ ++ D + DI I + D L + + G A+HHAGL+
Sbjct: 265 RLANTVRPH-LSTEERD-QLADIAEEIRDVSDTETSDD--LADAVADGAAFHHAGLSRGH 320
Query: 858 REVVETCYRKGLVRVLTATSTLAAGVNLPA------RRVIFRQPRIGRDFIDGTRYRQMA 911
RE+VE +R LV+V+ AT TLAAGVN P+ + G + QM
Sbjct: 321 RELVEDAFRDRLVKVVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLEVHQMM 380
Query: 912 GRAGRTGIDTKGESMLICKP-EEVKKIMGLLNESCP-PLHSCLSEDKNGMTHAILEVVAG 969
GRAGR G+D GE++LI +EV ++ + P P+ S L+ + TH IL VA
Sbjct: 381 GRAGRPGLDPYGEAVLIASSHDEVDELFERYVWADPEPVRSKLAAEPALRTH-ILATVAS 439
Query: 970 GIVQTAEDIHRYVRCTLLNS-TKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLG 1028
G ++ + + ++ TL S T + + D L +L FLE E +L +T+ LG
Sbjct: 440 GFARSRKGLLEFLEQTLYASQTDDSGQLERVVDDVLTYLQRNDFLEI-EAGELDATS-LG 497
Query: 1029 RAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLEL 1088
L P + ++D L G ASD +P + + EP + EL
Sbjct: 498 HTVSRLYLDPMSAAEIVDGLRDWERG---ASD-STSASGSPADAQAEPPANSGFTTASEL 553
Query: 1089 SA-LDQSVGNQ--VGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLS 1145
+ D+S ++ +S L + P LR + EY + +
Sbjct: 554 AEDADESDADRDPDDISALGLYHLVSRTPDMYQLYLRSGDRE-----EYEMELFEREEEL 608
Query: 1146 DAQTLRVCK--RF---YVALILSRLVQE--TPVLE--VCETFKVARGMVQALQENAGRFA 1196
T + RF AL +RL+++ T V E + + + V G ++ E A
Sbjct: 609 LGPTPSEFEEGRFEDWLSALKTARLLEDWATEVDEATITDRYGVGPGDIRGKVETAQWLL 668
Query: 1197 SMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPL 1256
+ D I++ + RV GVR E+V+L + V RAR L++AG+
Sbjct: 669 GAAESLASEVD-LDAARAISEARIRVEHGVREELVDLAGVRGVGRKRARRLFQAGITDRA 727
Query: 1257 AIAEASISEIVKAL 1270
+ +A + ++ AL
Sbjct: 728 QLRDADKAVVLAAL 741
>sp|O08307|DPO1_CHLAA DNA polymerase I OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM
635 / J-10-fl) GN=polA PE=3 SV=1
Length = 942
Score = 191 bits (485), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 224/446 (50%), Gaps = 44/446 (9%)
Query: 1738 IEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIAN 1797
+E+PL+ VL DMEL GI +D E + +++ L ++ Y AG F++ + + +
Sbjct: 534 VELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLND 593
Query: 1798 VLYGHLKLPIPEGHNKGKQHP---STDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGS 1854
VL+G L + P H K S L+ L +PI I +R L KL + + +
Sbjct: 594 VLFGRLGID-PRAHGLSKLKSGGYSITAEVLEELSQLYPIAADILTYRQLTKLKSTYIDA 652
Query: 1855 ICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEV 1914
+ L ++ + +H + Q ATGRLS PNLQ + E +I
Sbjct: 653 LPDL----VNPRTGRIHTSYNQLGAATGRLSSNNPNLQNIPVRTE---EGREI------- 698
Query: 1915 DHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAAR 1974
R F+ ++ W +AADYSQIELR++AH S D LI + D+ A+R
Sbjct: 699 -------RRAFV-AEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQ-GLDIHAATASR 749
Query: 1975 WTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVAS 2034
G +V +R K +++G++YG+ L+++L + A++ I + + FPG+
Sbjct: 750 LFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGIRR 809
Query: 2035 WLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAM 2094
++ + Q GYV++L GR+R + ++ + ++ A+R+A+N+ QG+AAD++K+AM
Sbjct: 810 YIDQTLEFGRQHGYVQTLFGRRRVMEDLR-ASGARRAAAEREAINAPIQGTAADLMKMAM 868
Query: 2095 INIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCME 2154
+N+H A Q L R RLLLQVHDEL+ E ++ A L++ M
Sbjct: 869 VNVHR-------------ALREQGL--RTRLLLQVHDELIAEAPEDEVEPAARLLRDVMS 913
Query: 2155 SAAL-LLVPLLVKIQVGSTWGSLEPF 2179
S L+VPL V ++VG W + P
Sbjct: 914 SVYRDLVVPLSVNLEVGPNWDEMSPL 939
>sp|P56105|DPO1_HELPY DNA polymerase I OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=polA PE=3 SV=2
Length = 891
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 146/464 (31%), Positives = 214/464 (46%), Gaps = 53/464 (11%)
Query: 1716 RALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYL 1775
+ LC K + E L+ IE P + VL ME G +D + + +L L
Sbjct: 478 KRLCEYFEKGGLEENLLSLAREIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVL 537
Query: 1776 EKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIV 1835
E++ L G+ F+L + ++ VLY L LP K K H + +K L +L +HP +
Sbjct: 538 ERQILELIGVDFNLNSPKQLSEVLYDKLGLP------KNKSHSTDEKSLLKIL-DKHPSI 590
Query: 1836 PVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVE 1895
+I E+R L KL N L R+ K +H ++QT TATGRLS PNLQ
Sbjct: 591 ALILEYRELNKLFNTY---TTPLLRLKDKDDK--IHTTFIQTGTATGRLSSHSPNLQ--- 642
Query: 1896 HMVEFKMSNEDIYGGNAEVDHCK-INARDFFIPSQENWILLAADYSQIELRLMAHFSKDP 1954
N V K + R FI S + + LL DYSQIELRL+AHFS+D
Sbjct: 643 ---------------NIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDK 687
Query: 1955 ALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCS 2014
L+ K D+ + G + + ++R K + +G++YGMG LSE LN S
Sbjct: 688 DLMEAFLKGR-DIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLSETLNIS 743
Query: 2015 SNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQ 2074
NEAK I+++ FP + +L+ + +L GR R N+ K
Sbjct: 744 LNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDYVKGNYL 802
Query: 2075 RQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELV 2134
R+ VN+I QGSA+D++K+ M+ V +K + S RLLLQVHDEL+
Sbjct: 803 REGVNAIFQGSASDLLKLGMLK-----VSERFKNNPS-----------VRLLLQVHDELI 846
Query: 2135 LEVDPSVIKEAVSLVQKCMESAAL-LLVPLLVKIQVGSTWGSLE 2177
E++ E +Q+ + L VPL + W L+
Sbjct: 847 FEIEEKNAPELQQEIQRILNDEVYPLRVPLETSAFIAKRWNELK 890
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 147/510 (28%), Positives = 242/510 (47%), Gaps = 67/510 (13%)
Query: 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601
+N++ T+AGK+ +A + K ++ ++P S+ EK E L L E LG V
Sbjct: 38 KNIMVSVPTAAGKTLIAYSAIYETFKKKLK-SIYIVPLRSLAMEKYEELSRLRE-LGMRV 95
Query: 602 RSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG 660
+ GN K V + T EKA+SL++ + + E+G++VIDE+HM+ D+ RG
Sbjct: 96 KLSIGNYDDTPDFIKRYDVVILTSEKADSLMHH--DPYMMEEVGLMVIDEIHMIGDEYRG 153
Query: 661 YLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQ 720
LE ++T RY E +I+ +SAT+ N + +A+WL
Sbjct: 154 PTLETVITTARYVNPET-----------------------RIIALSATVSNASEIAEWLN 190
Query: 721 AALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGH 780
A+L +++FRPVPL KVG + R L D D I L E V +G
Sbjct: 191 ASLIKSSFRPVPL----KVGI--------LYRNRLFLDGDARSDVD-INLLVKETVDDGG 237
Query: 781 SVLIFCSSRKGCESTARHVSKFLKKFS-INVHSSDSEFIDITSAIDALRRCPAGLDPVLE 839
VLIF SSRK E A+++S+ + + V S D+ D +L
Sbjct: 238 QVLIFVSSRKRAEDMAKNLSQLFDPINDLKVSSEDANV----------------YDDLLN 281
Query: 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF----RQP 895
E LP GV++HHAGL+ E+R +E +R ++V+ AT TLAAGVNLPAR VI R
Sbjct: 282 EMLPHGVSFHHAGLSNEQRSFIEKAFRHRKLKVIVATPTLAAGVNLPARLVIVKDVTRYG 341
Query: 896 RIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMG-LLNESCPPLHSCLSE 954
+G ++ +QM GRAGR G D G ++ +++ ++E P+ S + +
Sbjct: 342 DLGITYLSNMEVKQMIGRAGRPGYDQYGIGIIYAASANSYQVVKEYISEEPEPVDSYIGK 401
Query: 955 DKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLE 1014
+ + L +A G+ + ++ + R T + ++ +S+++L F++
Sbjct: 402 PEK-VRFNTLAAIAMGLATSQVEMEEFYRSTFYYAQNGEDEIPNRINESIKFLKENGFIK 460
Query: 1015 WNEDTKLYSTTPLGRAAFGSSLCPEESLIV 1044
+ + T G+ + PE ++I+
Sbjct: 461 EKDSLR---ATEFGKMISNLYIDPESAIIL 487
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 1159 ALILSRLVQETPVLEVCETFKVARGMVQALQENAG----RFASMVSVF-CERLGWYDLEG 1213
AL+L + E + E + VA G +QA NA A + S+F ER ++
Sbjct: 541 ALVLREWISEASTRRIFEMYGVAPGDLQARVNNADWISYSLAHLASIFKPERRRKLEILN 600
Query: 1214 LIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFES 1273
+ R+ G+R E+++L IP + RAR LY+AG+ +A + S I K L+
Sbjct: 601 M------RIKEGIREELMDLVLIPAIGRVRARRLYEAGIHNVQELAFSDPSRI-KMLYGF 653
Query: 1274 SSWIAEA-QRRVQLGVAKKIK 1293
S +A A +R + V+++I+
Sbjct: 654 SDTLANAVVKRAKAIVSERIR 674
>sp|Q9ZJE9|DPO1_HELPJ DNA polymerase I OS=Helicobacter pylori (strain J99) GN=polA PE=3
SV=1
Length = 897
Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 216/464 (46%), Gaps = 53/464 (11%)
Query: 1716 RALCSVLWKLLVSEELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYL 1775
+ LC K + E+L+ +IE P V VL ME G +D + + +L L
Sbjct: 484 KRLCEYFEKGGLEEDLLTLARDIETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELNVL 543
Query: 1776 EKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIV 1835
E++ L G+ F+L + + VLY L LP K K H + +K+ L +L +HP +
Sbjct: 544 ERQILDLIGVDFNLNSPKQLGEVLYDKLGLP------KNKSHSTDEKNLLKIL-DKHPSI 596
Query: 1836 PVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVE 1895
P+I E+R L KL N L R+ K +H ++QT TATGRLS PNLQ
Sbjct: 597 PLILEYRELNKLFNTY---TTPLLRLKDKDDK--IHTTFIQTGTATGRLSSHSPNLQ--- 648
Query: 1896 HMVEFKMSNEDIYGGNAEVDHCK-INARDFFIPSQENWILLAADYSQIELRLMAHFSKDP 1954
N V K + R FI S + + LL DYSQIELRL+AHFS+D
Sbjct: 649 ---------------NIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDK 693
Query: 1955 ALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCS 2014
L+ K D+ + G + + ++R K + +G++YGMG LSE L+
Sbjct: 694 DLMEAFLKGR-DIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLSIP 749
Query: 2015 SNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQ 2074
+EAK I+++ FP + +L+ + +L GR R N+ K
Sbjct: 750 LSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFD-FTGVNDYVKGNYL 808
Query: 2075 RQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELV 2134
R+ VN+I QGSA+D++K+ M+ V +K + S RLLLQVHDEL+
Sbjct: 809 REGVNAIFQGSASDLLKLGMLK-----VSERFKNNPS-----------VRLLLQVHDELI 852
Query: 2135 LEVDPSVIKEAVSLVQKCMESAAL-LLVPLLVKIQVGSTWGSLE 2177
E++ E +Q+ + L VPL + W L+
Sbjct: 853 FEIEEKNAPELQQEIQRILNDEVYPLRVPLETSAFIAKRWNELK 896
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 153/499 (30%), Positives = 246/499 (49%), Gaps = 77/499 (15%)
Query: 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS 568
L + + ++ K+RG+ +L+P QVE + G+ R+++ C +T++GKS +AE+ ++ +
Sbjct: 8 LDARLIAVLKERGVGRLFPPQVEAVRA-GIFDGRSVLLCTATASGKSLLAEVAAVKAGLE 66
Query: 569 TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYY------GNQGGGSLPKDT----- 617
G+MAL +P ++ EK H SYY G G D
Sbjct: 67 -GRMALYAVPLKALAYEKLVHF------------SYYRGLVKVGVSTGDFDSDDRRLHEF 113
Query: 618 SVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEG 677
V V T EK +SL+ L +G++V+DE+H + D RG +LE ++ KLR+ +
Sbjct: 114 DVVVVTYEKLDSLLRH--RPNWLGLVGVVVVDEIHYLGDPRRGPVLESIVAKLRHLGLK- 170
Query: 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYI 737
Q +G+SAT+ N VA WL A L E+++RPVPL E +
Sbjct: 171 ----------------------TQFIGLSATVGNAGEVAAWLGARLVESSWRPVPLREGV 208
Query: 738 KVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTAR 797
G I + R N G D V L + V G L+F +SR A+
Sbjct: 209 YHGGVIRFSDGSMQRV-----NAPG---DAEVALAVDAVAGGGQALVFTNSRSSTVRLAK 260
Query: 798 HVSKFLKKFSINVHSSDS---EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLT 854
V+K ++ + + + E + +S+ R L + + GVA+H+AGL
Sbjct: 261 AVAKAMEAAGLVPRGAKALAEEVLKASSSKIIGRE--------LADLVARGVAFHNAGLE 312
Query: 855 VEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR-----QPRIGRDFIDGTRYRQ 909
+E R +VE +R+GL++V+ +T+TLAAGVNLPARRV+ P +GR+ I YRQ
Sbjct: 313 LEVRRLVEDGFRRGLLKVVVSTTTLAAGVNLPARRVVVADYERFDPALGREEIPVLEYRQ 372
Query: 910 MAGRAGRTGIDTKGESMLICKPE-EVKKIMG-LLNESCPPLHSCLSEDKNGMTHAILEVV 967
MAGRAGR G+D GE++L+ + + E + +M + + S + + N H +L V
Sbjct: 373 MAGRAGRPGLDPYGEAVLVARSKGEAEYLMERYVRGQVEGVRSHILAEPNLRAH-VLGAV 431
Query: 968 AGGIVQTAEDIHRYVRCTL 986
GG ++ +D+ + TL
Sbjct: 432 GGGYAKSLDDLVDFFSNTL 450
Score = 36.6 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 1221 RVSFGVRAEIVEL-TTIPYVKGSRARALYKAGLRTPLAIAEASISEI 1266
RV +GVR E++ L T++ V RAR LY G RT IA A++ EI
Sbjct: 632 RVVYGVREELLGLVTSLRGVGRVRARTLYNFGYRTLEDIARATVREI 678
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 794,851,283
Number of Sequences: 539616
Number of extensions: 33839234
Number of successful extensions: 99602
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 98694
Number of HSP's gapped (non-prelim): 545
length of query: 2191
length of database: 191,569,459
effective HSP length: 133
effective length of query: 2058
effective length of database: 119,800,531
effective search space: 246549492798
effective search space used: 246549492798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 70 (31.6 bits)