Query 000107
Match_columns 2191
No_of_seqs 833 out of 5169
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pv8_A DNA polymerase I; DNA p 100.0 1E-116 5E-121 1142.7 51.0 559 1509-2177 30-592 (592)
2 2kfn_A Klenow fragment of DNA 100.0 1E-112 5E-117 1122.2 53.1 589 1490-2177 8-605 (605)
3 4dfk_A DNA polymerase I, therm 100.0 5E-112 2E-116 1090.0 45.5 528 1509-2178 11-540 (540)
4 1bgx_T TAQ DNA polymerase; DNA 100.0 4E-106 2E-110 1078.8 31.9 527 1508-2178 304-832 (832)
5 1x9m_A DNA polymerase; DNA plo 100.0 2.5E-96 9E-101 979.8 41.7 504 1584-2177 41-698 (698)
6 4f92_B U5 small nuclear ribonu 100.0 5E-79 1.7E-83 873.3 51.2 707 454-1272 855-1598(1724)
7 2va8_A SSO2462, SKI2-type heli 100.0 4.7E-78 1.6E-82 816.5 57.6 680 509-1300 15-711 (715)
8 2zj8_A DNA helicase, putative 100.0 7.9E-78 2.7E-82 814.4 55.6 666 509-1269 8-684 (720)
9 2p6r_A Afuhel308 helicase; pro 100.0 6.7E-76 2.3E-80 793.5 46.6 668 505-1297 6-683 (702)
10 4f92_B U5 small nuclear ribonu 100.0 5.5E-70 1.9E-74 780.0 44.9 655 509-1271 66-765 (1724)
11 2xgj_A ATP-dependent RNA helic 100.0 2.7E-42 9.2E-47 476.4 36.3 402 519-970 82-534 (1010)
12 3l9o_A ATP-dependent RNA helic 100.0 6.6E-42 2.3E-46 476.2 31.0 420 518-987 178-645 (1108)
13 3ikm_A DNA polymerase subunit 100.0 3.3E-43 1.1E-47 454.7 13.1 301 1802-2147 682-1084(1172)
14 2db3_A ATP-dependent RNA helic 100.0 1.2E-40 4E-45 425.5 34.4 344 509-948 63-427 (434)
15 2i4i_A ATP-dependent RNA helic 100.0 9.7E-40 3.3E-44 413.1 30.7 336 509-936 22-387 (417)
16 3i5x_A ATP-dependent RNA helic 100.0 9.5E-39 3.2E-43 420.9 36.7 350 509-941 79-458 (563)
17 4a4z_A Antiviral helicase SKI2 100.0 5.4E-39 1.9E-43 443.6 32.5 394 520-957 36-519 (997)
18 3pey_A ATP-dependent RNA helic 100.0 3.9E-38 1.3E-42 394.3 36.8 336 509-938 12-362 (395)
19 1s2m_A Putative ATP-dependent 100.0 4E-38 1.4E-42 396.4 32.5 342 509-949 28-385 (400)
20 3sqw_A ATP-dependent RNA helic 100.0 6.7E-38 2.3E-42 414.2 35.8 351 508-941 27-407 (579)
21 3fht_A ATP-dependent RNA helic 100.0 9.7E-38 3.3E-42 393.6 35.2 334 509-933 32-380 (412)
22 2xau_A PRE-mRNA-splicing facto 100.0 4.7E-38 1.6E-42 424.7 32.9 431 509-1048 79-534 (773)
23 2j0s_A ATP-dependent RNA helic 100.0 7E-38 2.4E-42 395.7 32.0 342 509-948 44-402 (410)
24 1hv8_A Putative ATP-dependent 100.0 8E-38 2.7E-42 387.5 31.8 341 509-947 13-363 (367)
25 3fmp_B ATP-dependent RNA helic 100.0 4.4E-39 1.5E-43 415.9 19.8 342 509-936 99-450 (479)
26 3eiq_A Eukaryotic initiation f 100.0 2.6E-38 8.9E-43 399.4 26.1 344 509-948 47-406 (414)
27 1xti_A Probable ATP-dependent 100.0 3E-37 1E-41 386.7 31.8 329 509-934 15-359 (391)
28 2v1x_A ATP-dependent DNA helic 100.0 4.8E-37 1.7E-41 404.3 33.0 334 509-943 28-385 (591)
29 2z0m_A 337AA long hypothetical 100.0 3.6E-37 1.2E-41 377.5 28.5 322 509-938 1-328 (337)
30 1fuu_A Yeast initiation factor 100.0 1.9E-38 6.6E-43 397.6 12.8 348 509-948 28-385 (394)
31 1oyw_A RECQ helicase, ATP-depe 100.0 1.7E-36 5.8E-41 395.1 28.4 331 509-944 9-355 (523)
32 3fho_A ATP-dependent RNA helic 100.0 2.3E-37 7.8E-42 402.6 17.2 349 509-949 126-491 (508)
33 3oiy_A Reverse gyrase helicase 100.0 2.1E-35 7E-40 374.4 25.3 339 511-946 8-382 (414)
34 3tbk_A RIG-I helicase domain; 100.0 1E-33 3.5E-38 370.6 30.9 352 524-935 4-510 (555)
35 4a2p_A RIG-I, retinoic acid in 100.0 3.8E-34 1.3E-38 375.2 24.7 354 521-935 4-511 (556)
36 2ykg_A Probable ATP-dependent 100.0 1.6E-33 5.6E-38 380.1 29.3 361 515-935 4-519 (696)
37 4a2q_A RIG-I, retinoic acid in 100.0 1.2E-32 4E-37 376.6 28.8 355 520-935 244-752 (797)
38 1wp9_A ATP-dependent RNA helic 100.0 1.4E-31 4.7E-36 342.6 27.9 333 524-935 9-478 (494)
39 4gl2_A Interferon-induced heli 100.0 3.1E-32 1.1E-36 367.8 19.4 348 524-930 7-517 (699)
40 4a2w_A RIG-I, retinoic acid in 100.0 2E-31 6.7E-36 368.7 26.1 355 520-935 244-752 (936)
41 4ddu_A Reverse gyrase; topoiso 100.0 3E-31 1E-35 369.3 26.4 327 512-933 66-493 (1104)
42 2jlq_A Serine protease subunit 100.0 9.4E-32 3.2E-36 344.7 15.4 292 521-931 1-310 (451)
43 1gm5_A RECG; helicase, replica 100.0 1.1E-31 3.8E-36 360.4 16.3 321 511-931 356-696 (780)
44 1gku_B Reverse gyrase, TOP-RG; 100.0 2.9E-31 1E-35 369.8 18.4 286 512-897 45-352 (1054)
45 2eyq_A TRCF, transcription-rep 100.0 3.2E-29 1.1E-33 351.2 33.4 313 511-932 590-922 (1151)
46 2whx_A Serine protease/ntpase/ 100.0 2E-30 6.8E-35 342.5 17.9 292 522-930 169-476 (618)
47 3rc3_A ATP-dependent RNA helic 100.0 1.1E-29 3.6E-34 336.6 24.7 296 538-951 152-463 (677)
48 2oca_A DAR protein, ATP-depend 100.0 7.5E-30 2.6E-34 332.2 21.7 323 523-930 112-453 (510)
49 1tf5_A Preprotein translocase 100.0 5.3E-30 1.8E-34 337.1 18.6 344 519-933 79-546 (844)
50 2fwr_A DNA repair protein RAD2 100.0 3.4E-29 1.2E-33 322.8 21.5 306 524-931 93-453 (472)
51 2z83_A Helicase/nucleoside tri 100.0 4.7E-29 1.6E-33 320.3 18.8 281 537-932 17-313 (459)
52 1yks_A Genome polyprotein [con 100.0 6.1E-29 2.1E-33 317.4 18.5 278 537-929 4-296 (440)
53 2wv9_A Flavivirin protease NS2 100.0 2.2E-29 7.5E-34 334.5 14.9 289 524-929 215-530 (673)
54 2fsf_A Preprotein translocase 100.0 1.3E-28 4.3E-33 322.9 17.9 356 518-933 69-584 (853)
55 3o8b_A HCV NS3 protease/helica 100.0 1E-28 3.5E-33 323.4 16.6 282 524-933 217-515 (666)
56 2v6i_A RNA helicase; membrane, 100.0 8.5E-28 2.9E-32 306.2 22.5 275 540-929 1-288 (431)
57 1nkt_A Preprotein translocase 100.0 8.2E-28 2.8E-32 315.1 22.2 345 518-933 106-618 (922)
58 3h1t_A Type I site-specific re 99.9 5.9E-27 2E-31 310.4 20.8 321 524-919 178-545 (590)
59 1z63_A Helicase of the SNF2/RA 99.9 7.4E-24 2.5E-28 275.1 26.4 336 523-944 36-466 (500)
60 3fe2_A Probable ATP-dependent 99.9 1.9E-24 6.4E-29 254.2 17.2 179 509-717 36-226 (242)
61 3ly5_A ATP-dependent RNA helic 99.9 2.7E-24 9.3E-29 256.2 16.3 182 507-717 59-251 (262)
62 3dmq_A RNA polymerase-associat 99.9 2.8E-23 9.6E-28 287.8 27.0 348 523-947 152-631 (968)
63 3iuy_A Probable ATP-dependent 99.9 1.8E-23 6.2E-28 243.3 17.4 172 509-711 27-210 (228)
64 3fmo_B ATP-dependent RNA helic 99.9 3.3E-23 1.1E-27 251.6 20.0 180 509-717 99-286 (300)
65 3dkp_A Probable ATP-dependent 99.9 3.2E-23 1.1E-27 243.9 18.7 188 508-721 35-230 (245)
66 1vec_A ATP-dependent RNA helic 99.9 5.6E-23 1.9E-27 234.9 18.2 173 509-711 10-189 (206)
67 1q0u_A Bstdead; DEAD protein, 99.9 7.4E-23 2.5E-27 236.8 18.2 173 509-711 11-193 (219)
68 2oxc_A Probable ATP-dependent 99.9 1.1E-22 3.6E-27 237.5 18.2 181 509-721 31-218 (230)
69 1qde_A EIF4A, translation init 99.9 1.9E-22 6.6E-27 233.7 20.1 173 509-711 21-198 (224)
70 1wrb_A DJVLGB; RNA helicase, D 99.9 5.4E-23 1.8E-27 243.3 15.3 182 509-716 30-227 (253)
71 2pl3_A Probable ATP-dependent 99.9 1.2E-22 4.1E-27 237.6 18.1 180 509-717 32-221 (236)
72 3bor_A Human initiation factor 99.9 1.2E-22 4.1E-27 238.2 18.0 178 509-716 37-222 (237)
73 3ber_A Probable ATP-dependent 99.9 1.1E-22 3.7E-27 240.6 17.7 180 509-717 50-236 (249)
74 2gxq_A Heat resistant RNA depe 99.9 1.6E-22 5.6E-27 231.1 15.8 179 509-719 8-196 (207)
75 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 2.5E-21 8.6E-26 266.3 26.1 373 510-931 250-708 (1038)
76 1t6n_A Probable ATP-dependent 99.9 5.6E-22 1.9E-26 229.3 16.1 179 509-717 21-209 (220)
77 3jux_A Protein translocase sub 99.9 2.8E-20 9.6E-25 239.2 28.5 343 520-933 72-588 (822)
78 3mwy_W Chromo domain-containin 99.9 1.6E-20 5.5E-25 256.5 27.2 329 524-932 236-684 (800)
79 1z3i_X Similar to RAD54-like; 99.8 3E-19 1E-23 238.3 35.6 329 523-932 54-528 (644)
80 1c4o_A DNA nucleotide excision 99.8 2E-18 6.9E-23 230.4 28.1 122 768-933 428-551 (664)
81 2ipc_A Preprotein translocase 99.8 9.4E-18 3.2E-22 219.4 27.7 130 520-655 76-215 (997)
82 2d7d_A Uvrabc system protein B 99.7 7.4E-17 2.5E-21 215.2 27.8 122 768-933 434-557 (661)
83 3llm_A ATP-dependent RNA helic 99.7 3.5E-17 1.2E-21 191.6 17.8 169 518-721 55-229 (235)
84 3b6e_A Interferon-induced heli 99.7 2.3E-17 7.9E-22 189.1 13.0 136 519-657 28-177 (216)
85 1fuk_A Eukaryotic initiation f 99.7 1.8E-16 6E-21 175.5 16.0 128 778-951 29-159 (165)
86 3eaq_A Heat resistant RNA depe 99.7 1.8E-16 6.1E-21 182.9 14.8 115 778-938 30-144 (212)
87 2hjv_A ATP-dependent RNA helic 99.7 3.2E-16 1.1E-20 173.2 15.9 116 778-939 34-149 (163)
88 2rb4_A ATP-dependent RNA helic 99.7 1.5E-16 5E-21 177.9 13.0 120 778-939 33-154 (175)
89 1rif_A DAR protein, DNA helica 99.7 2.4E-16 8E-21 189.6 14.1 151 524-711 113-264 (282)
90 1t5i_A C_terminal domain of A 99.6 4E-16 1.4E-20 174.1 11.9 110 778-933 30-139 (172)
91 2jgn_A DBX, DDX3, ATP-dependen 99.6 5.9E-16 2E-20 174.8 11.7 120 778-943 45-167 (185)
92 3i32_A Heat resistant RNA depe 99.6 7.1E-16 2.4E-20 186.6 12.7 114 778-937 27-140 (300)
93 2p6n_A ATP-dependent RNA helic 99.6 1.1E-15 3.9E-20 173.3 13.4 109 778-932 53-161 (191)
94 2vl7_A XPD; helicase, unknown 99.6 4.4E-15 1.5E-19 194.3 16.1 128 520-656 4-189 (540)
95 2yjt_D ATP-dependent RNA helic 99.3 3.4E-16 1.2E-20 174.1 0.0 113 778-936 29-141 (170)
96 2fz4_A DNA repair protein RAD2 99.5 3E-14 1E-18 167.1 15.7 115 523-657 92-207 (237)
97 3crv_A XPD/RAD3 related DNA he 99.5 1.8E-12 6.3E-17 170.1 26.4 132 521-659 1-189 (551)
98 1yt3_A Ribonuclease D, RNAse D 99.3 2.3E-11 7.8E-16 152.1 15.8 189 1489-1749 3-194 (375)
99 3saf_A Exosome component 10; e 99.2 7.9E-11 2.7E-15 148.0 12.9 174 1486-1731 107-282 (428)
100 1z5z_A Helicase of the SNF2/RA 99.1 1.6E-10 5.3E-15 138.2 13.1 124 766-932 99-224 (271)
101 2e6m_A Werner syndrome ATP-dep 99.1 1.6E-10 5.5E-15 132.7 12.4 182 1486-1734 14-203 (208)
102 3im1_A Protein SNU246, PRE-mRN 99.1 9.7E-11 3.3E-15 143.7 11.1 190 1020-1270 7-196 (328)
103 2q0z_X Protein Pro2281; SEC63, 98.9 5.9E-09 2E-13 128.5 15.9 188 1067-1271 13-201 (339)
104 2hbj_A Exosome complex exonucl 98.9 3.4E-09 1.2E-13 133.4 13.1 175 1487-1733 85-261 (410)
105 3cym_A Uncharacterized protein 98.8 2.6E-08 8.9E-13 126.4 13.8 178 1488-1735 17-196 (440)
106 4a15_A XPD helicase, ATP-depen 98.1 3.5E-06 1.2E-10 111.8 9.2 83 524-606 3-87 (620)
107 1vk0_A Hypothetical protein; h 98.0 6.1E-05 2.1E-09 86.0 15.5 154 1506-1724 44-205 (206)
108 1w36_D RECD, exodeoxyribonucle 98.0 7.3E-06 2.5E-10 108.6 9.0 72 526-599 151-225 (608)
109 3upu_A ATP-dependent DNA helic 97.3 0.00068 2.3E-08 86.9 11.7 73 517-590 18-94 (459)
110 1wcn_A Transcription elongatio 97.3 0.00023 7.9E-09 66.9 5.2 55 1232-1298 8-62 (70)
111 3e1s_A Exodeoxyribonuclease V, 97.3 0.00044 1.5E-08 90.9 9.9 62 524-588 189-250 (574)
112 3v9w_A Ribonuclease T; DEDD nu 97.2 0.00065 2.2E-08 79.2 9.0 184 1494-1733 23-228 (235)
113 2gk6_A Regulator of nonsense t 97.1 0.0012 4.2E-08 87.8 11.5 68 522-592 178-246 (624)
114 2xzl_A ATP-dependent helicase 97.0 0.0023 7.9E-08 87.2 13.6 69 522-593 358-427 (802)
115 1u9l_A Transcription elongatio 96.9 0.00055 1.9E-08 64.2 4.1 59 1233-1303 8-66 (70)
116 2wjy_A Regulator of nonsense t 96.8 0.0028 9.5E-08 86.3 10.9 68 522-592 354-422 (800)
117 3lfu_A DNA helicase II; SF1 he 96.5 0.015 5.2E-07 77.5 14.8 78 523-604 8-90 (647)
118 1b22_A DNA repair protein RAD5 96.3 0.00062 2.1E-08 70.0 0.0 57 1232-1300 24-82 (114)
119 2o0j_A Terminase, DNA packagin 96.1 0.022 7.5E-07 71.0 12.5 120 524-656 163-287 (385)
120 2w9m_A Polymerase X; SAXS, DNA 96.1 0.0021 7.1E-08 84.5 3.0 108 1158-1296 43-151 (578)
121 3cpe_A Terminase, DNA packagin 96.0 0.036 1.2E-06 73.2 14.6 120 524-656 163-287 (592)
122 4a15_A XPD helicase, ATP-depen 95.5 0.061 2.1E-06 71.4 13.5 77 850-928 476-581 (620)
123 1vq8_Y 50S ribosomal protein L 95.2 0.0032 1.1E-07 73.2 0.0 61 1227-1299 11-71 (241)
124 4b3f_X DNA-binding protein smu 95.2 0.025 8.6E-07 75.6 8.3 67 523-592 188-255 (646)
125 2q6t_A DNAB replication FORK h 94.9 0.2 6.7E-06 63.9 15.3 134 536-675 195-350 (444)
126 3ec2_A DNA replication protein 94.7 0.18 6.1E-06 55.6 12.4 37 539-576 36-73 (180)
127 2fmp_A DNA polymerase beta; nu 94.5 0.032 1.1E-06 68.3 5.9 41 1227-1268 94-134 (335)
128 2r6a_A DNAB helicase, replicat 94.4 0.069 2.3E-06 68.3 9.1 133 537-675 199-351 (454)
129 1kft_A UVRC, excinuclease ABC 94.2 0.017 5.9E-07 55.4 2.2 52 1231-1295 24-75 (78)
130 2a1j_A DNA repair endonuclease 94.1 0.049 1.7E-06 50.1 4.9 38 1232-1270 5-42 (63)
131 3vkw_A Replicase large subunit 93.9 0.11 3.7E-06 65.7 9.2 88 540-655 160-247 (446)
132 1z00_A DNA excision repair pro 93.7 0.067 2.3E-06 52.6 5.5 51 1231-1294 19-69 (89)
133 2ihm_A POL MU, DNA polymerase 93.5 0.044 1.5E-06 67.6 4.7 42 1225-1267 96-137 (360)
134 4a1f_A DNAB helicase, replicat 93.5 0.26 9E-06 60.3 11.5 146 537-708 42-205 (338)
135 1uaa_A REP helicase, protein ( 93.3 0.099 3.4E-06 70.2 8.0 89 524-633 2-94 (673)
136 2a1j_B DNA excision repair pro 93.3 0.054 1.9E-06 53.5 4.1 53 1230-1295 31-83 (91)
137 1x2i_A HEF helicase/nuclease; 93.2 0.071 2.4E-06 50.3 4.5 51 1231-1294 14-64 (75)
138 2dr3_A UPF0273 protein PH0284; 93.2 0.29 9.8E-06 56.4 10.6 42 536-578 18-59 (247)
139 1z00_B DNA repair endonuclease 93.2 0.077 2.6E-06 51.6 4.7 38 1232-1270 19-56 (84)
140 1jms_A Terminal deoxynucleotid 93.1 0.055 1.9E-06 67.2 4.6 35 1226-1260 116-150 (381)
141 2b8t_A Thymidine kinase; deoxy 93.0 0.25 8.5E-06 57.0 9.7 92 540-655 11-102 (223)
142 1pjr_A PCRA; DNA repair, DNA r 93.0 0.15 5.2E-06 69.0 9.2 107 523-652 10-120 (724)
143 2cvh_A DNA repair and recombin 92.9 0.35 1.2E-05 54.6 10.6 37 537-577 16-52 (220)
144 1a5t_A Delta prime, HOLB; zinc 92.8 0.53 1.8E-05 57.5 12.7 42 525-567 3-49 (334)
145 2zts_A Putative uncharacterize 92.7 0.17 6E-06 58.3 7.8 42 536-577 25-66 (251)
146 2kjq_A DNAA-related protein; s 92.6 0.18 6.1E-06 54.3 7.3 21 540-560 35-55 (149)
147 1xx6_A Thymidine kinase; NESG, 92.5 0.1 3.6E-06 58.7 5.4 39 540-579 7-45 (191)
148 3bgw_A DNAB-like replicative h 92.4 0.27 9.1E-06 62.6 9.6 144 537-708 193-359 (444)
149 3bh0_A DNAB-like replicative h 91.9 0.63 2.1E-05 56.4 11.8 134 536-675 63-218 (315)
150 1l8q_A Chromosomal replication 91.7 0.75 2.6E-05 55.6 12.1 38 540-578 36-73 (324)
151 3te6_A Regulatory protein SIR3 91.6 0.59 2E-05 56.7 11.0 27 540-567 44-70 (318)
152 2p65_A Hypothetical protein PF 91.5 0.34 1.2E-05 52.8 8.0 20 541-560 43-62 (187)
153 2z43_A DNA repair and recombin 91.4 0.29 9.9E-06 59.6 8.1 43 537-579 103-150 (324)
154 3u4q_A ATP-dependent helicase/ 91.2 0.22 7.7E-06 71.2 7.8 68 524-595 10-82 (1232)
155 3bos_A Putative DNA replicatio 90.9 0.79 2.7E-05 52.1 10.6 36 540-576 51-86 (242)
156 2nrt_A Uvrabc system protein C 90.9 0.43 1.5E-05 54.4 8.1 65 1184-1269 141-205 (220)
157 3h4m_A Proteasome-activating n 90.8 0.67 2.3E-05 54.7 10.3 23 538-560 48-70 (285)
158 1xp8_A RECA protein, recombina 90.7 0.63 2.2E-05 57.6 10.2 93 537-655 70-165 (366)
159 3kl4_A SRP54, signal recogniti 90.7 1.2 4E-05 56.4 12.7 94 541-655 97-192 (433)
160 1jbk_A CLPB protein; beta barr 90.7 0.39 1.3E-05 52.3 7.5 25 541-566 43-67 (195)
161 1d2n_A N-ethylmaleimide-sensit 90.7 0.63 2.2E-05 54.8 9.9 21 540-560 63-83 (272)
162 2orv_A Thymidine kinase; TP4A 90.7 0.59 2E-05 53.9 9.0 40 540-580 18-57 (234)
163 2bcq_A DNA polymerase lambda; 90.5 0.25 8.6E-06 60.4 6.2 33 1230-1262 94-127 (335)
164 3syl_A Protein CBBX; photosynt 90.3 1.6 5.4E-05 52.1 13.1 20 541-560 67-86 (309)
165 1n0w_A DNA repair protein RAD5 90.2 0.58 2E-05 53.7 8.7 43 536-578 19-66 (243)
166 1cr0_A DNA primase/helicase; R 90.2 1 3.6E-05 53.7 11.2 41 537-577 31-71 (296)
167 1q57_A DNA primase/helicase; d 90.1 1 3.5E-05 58.2 11.8 133 537-675 238-391 (503)
168 2j9r_A Thymidine kinase; TK1, 90.0 0.29 1E-05 55.9 5.8 40 540-580 27-66 (214)
169 2i1q_A DNA repair and recombin 89.9 0.26 9E-06 59.8 5.7 56 1232-1299 4-59 (322)
170 2w0m_A SSO2452; RECA, SSPF, un 89.6 3.5 0.00012 46.5 14.6 40 537-577 19-58 (235)
171 2ehv_A Hypothetical protein PH 89.5 0.67 2.3E-05 53.3 8.6 41 537-577 26-66 (251)
172 2v1u_A Cell division control p 89.4 0.86 3E-05 55.9 10.0 37 540-577 43-85 (387)
173 3hr8_A Protein RECA; alpha and 89.3 0.86 2.9E-05 56.2 9.6 94 536-655 56-152 (356)
174 2p1j_A POLIII, DNA polymerase 89.2 1.4 4.8E-05 49.1 10.5 96 1583-1729 80-179 (186)
175 3vfd_A Spastin; ATPase, microt 89.1 0.89 3.1E-05 56.6 9.8 22 540-561 147-168 (389)
176 2i1q_A DNA repair and recombin 88.9 0.68 2.3E-05 56.1 8.4 124 537-675 94-246 (322)
177 2zr9_A Protein RECA, recombina 88.8 0.68 2.3E-05 57.0 8.3 94 536-655 56-152 (349)
178 1nlf_A Regulatory protein REPA 88.8 2 6.8E-05 50.8 12.1 41 537-578 26-76 (279)
179 1w4r_A Thymidine kinase; type 88.6 0.97 3.3E-05 50.8 8.6 39 540-579 19-57 (195)
180 2qby_B CDC6 homolog 3, cell di 88.6 1 3.5E-05 55.5 9.7 36 541-577 45-88 (384)
181 2chg_A Replication factor C sm 88.5 1.2 4.1E-05 49.6 9.5 19 542-560 39-57 (226)
182 3eie_A Vacuolar protein sortin 88.3 1.1 3.9E-05 54.1 9.8 21 540-560 50-70 (322)
183 2qz4_A Paraplegin; AAA+, SPG7, 88.3 1.2 4.1E-05 51.7 9.6 22 539-560 37-58 (262)
184 1pzn_A RAD51, DNA repair and r 88.0 0.48 1.6E-05 58.4 6.2 58 1231-1300 35-92 (349)
185 2z4s_A Chromosomal replication 88.0 1.8 6.1E-05 55.0 11.7 37 541-578 130-168 (440)
186 3dm5_A SRP54, signal recogniti 87.9 2.3 7.8E-05 53.8 12.3 57 541-601 100-158 (443)
187 4gfj_A Topoisomerase V; helix- 87.8 0.48 1.6E-05 56.9 5.6 109 1165-1293 379-516 (685)
188 3bqs_A Uncharacterized protein 87.8 0.36 1.2E-05 47.8 3.9 42 1231-1272 4-45 (93)
189 1v5w_A DMC1, meiotic recombina 87.1 0.97 3.3E-05 55.4 8.2 43 537-579 118-165 (343)
190 2qby_A CDC6 homolog 1, cell di 86.8 2.2 7.6E-05 52.1 11.3 37 540-577 44-83 (386)
191 1u94_A RECA protein, recombina 86.7 0.82 2.8E-05 56.4 7.2 93 537-655 59-154 (356)
192 3e2i_A Thymidine kinase; Zn-bi 86.3 0.77 2.6E-05 52.4 6.1 40 540-580 27-66 (219)
193 3b9p_A CG5977-PA, isoform A; A 86.2 2.5 8.7E-05 50.1 11.0 21 540-560 53-73 (297)
194 3mab_A Uncharacterized protein 86.1 0.63 2.1E-05 46.1 4.5 41 1232-1272 5-45 (93)
195 3d8b_A Fidgetin-like protein 1 86.0 1.1 3.8E-05 55.1 8.0 22 540-561 116-137 (357)
196 3lda_A DNA repair protein RAD5 86.0 1.4 4.8E-05 55.1 8.9 42 537-578 174-220 (400)
197 1fnn_A CDC6P, cell division co 85.7 2.2 7.7E-05 52.3 10.6 34 543-577 46-80 (389)
198 2owo_A DNA ligase; protein-DNA 85.4 0.54 1.8E-05 62.1 4.9 101 1167-1296 464-564 (671)
199 1njg_A DNA polymerase III subu 85.3 2.5 8.5E-05 47.6 9.9 19 542-560 46-64 (250)
200 1sxj_A Activator 1 95 kDa subu 84.7 2.5 8.5E-05 54.8 10.7 33 541-577 77-109 (516)
201 1xwi_A SKD1 protein; VPS4B, AA 84.7 3.7 0.00013 49.7 11.6 21 540-560 44-64 (322)
202 2zpa_A Uncharacterized protein 84.5 1.3 4.6E-05 58.5 7.9 92 524-655 175-268 (671)
203 4b4t_J 26S protease regulatory 84.4 1.7 5.8E-05 54.2 8.4 22 538-559 179-200 (405)
204 2r2a_A Uncharacterized protein 84.3 1.1 3.6E-05 50.8 6.1 22 543-564 7-28 (199)
205 1dgs_A DNA ligase; AMP complex 84.1 0.85 2.9E-05 60.2 5.9 98 1170-1296 462-559 (667)
206 2qp9_X Vacuolar protein sortin 83.8 1.7 6E-05 53.4 8.2 21 540-560 83-103 (355)
207 3cmw_A Protein RECA, recombina 83.4 1.9 6.7E-05 62.6 9.4 93 537-655 1427-1522(1706)
208 3cmu_A Protein RECA, recombina 82.7 1.1 3.7E-05 65.9 6.5 92 537-654 1423-1517(2050)
209 1gm5_A RECG; helicase, replica 82.6 3.3 0.00011 56.2 10.9 83 775-893 413-497 (780)
210 3u61_B DNA polymerase accessor 82.4 2.9 0.0001 50.3 9.4 19 542-560 49-67 (324)
211 2bgw_A XPF endonuclease; hydro 82.3 0.92 3.2E-05 52.0 4.6 51 1232-1295 163-213 (219)
212 2vhj_A Ntpase P4, P4; non- hyd 82.1 1.1 3.7E-05 54.3 5.2 28 537-564 119-146 (331)
213 1w5s_A Origin recognition comp 82.1 5.6 0.00019 49.2 12.1 37 540-577 49-93 (412)
214 1cuk_A RUVA protein; DNA repai 82.0 0.93 3.2E-05 51.4 4.3 53 1233-1298 75-130 (203)
215 3c65_A Uvrabc system protein C 82.0 0.33 1.1E-05 55.7 0.6 77 1184-1294 146-222 (226)
216 3io5_A Recombination and repai 81.4 1.8 6.1E-05 52.3 6.7 96 536-655 24-124 (333)
217 1ixr_A Holliday junction DNA h 80.8 0.96 3.3E-05 50.8 3.8 53 1232-1297 73-128 (191)
218 1lv7_A FTSH; alpha/beta domain 80.7 7.4 0.00025 45.1 11.7 20 541-560 45-64 (257)
219 3hu3_A Transitional endoplasmi 80.5 2.2 7.7E-05 54.8 7.7 23 538-560 235-257 (489)
220 4b4t_K 26S protease regulatory 80.3 5.4 0.00018 50.3 10.8 23 537-559 202-224 (428)
221 1qvr_A CLPB protein; coiled co 80.2 3.4 0.00011 57.0 9.8 22 541-562 191-212 (854)
222 3mxm_B Three prime repair exon 80.0 4.2 0.00014 47.3 9.1 98 1584-1726 103-215 (242)
223 3pfi_A Holliday junction ATP-d 79.9 2.8 9.6E-05 50.7 8.0 20 541-560 55-74 (338)
224 2z43_A DNA repair and recombin 79.7 0.37 1.3E-05 58.7 0.0 64 1224-1299 5-68 (324)
225 3pvs_A Replication-associated 79.6 2.3 7.9E-05 54.0 7.3 19 542-560 51-69 (447)
226 4b4t_L 26S protease subunit RP 79.0 5.4 0.00019 50.4 10.3 22 538-559 212-233 (437)
227 4b4t_H 26S protease regulatory 78.6 4.6 0.00016 51.2 9.4 23 537-559 239-261 (467)
228 3b0x_A DNA polymerase beta fam 78.4 1.6 5.5E-05 57.3 5.4 61 1226-1298 88-150 (575)
229 3lda_A DNA repair protein RAD5 78.0 1.6 5.5E-05 54.7 5.0 58 1231-1300 81-140 (400)
230 4b4t_M 26S protease regulatory 77.9 3.2 0.00011 52.5 7.7 22 538-559 212-233 (434)
231 1jr3_A DNA polymerase III subu 77.8 5.7 0.00019 48.5 9.9 19 542-560 39-57 (373)
232 3t15_A Ribulose bisphosphate c 77.6 2 6.7E-05 51.4 5.5 23 538-560 33-55 (293)
233 2f96_A Ribonuclease T; RNAse, 76.8 22 0.00075 40.5 13.8 99 1584-1728 110-215 (224)
234 1sxj_B Activator 1 37 kDa subu 76.5 5.6 0.00019 47.4 9.1 18 543-560 44-61 (323)
235 1um8_A ATP-dependent CLP prote 76.5 4 0.00014 50.3 8.1 21 540-560 71-91 (376)
236 2ce7_A Cell division protein F 76.4 6.2 0.00021 50.5 9.9 21 540-560 48-68 (476)
237 4glx_A DNA ligase; inhibitor, 75.9 3.4 0.00012 53.9 7.3 50 1234-1296 515-564 (586)
238 4b4t_I 26S protease regulatory 74.7 5.8 0.0002 49.8 8.7 22 538-559 213-234 (437)
239 1sxj_D Activator 1 41 kDa subu 74.7 10 0.00035 45.8 10.9 19 542-560 59-77 (353)
240 1hqc_A RUVB; extended AAA-ATPa 73.9 3.3 0.00011 49.6 6.2 20 541-560 38-57 (324)
241 3cmw_A Protein RECA, recombina 73.9 3.9 0.00013 59.5 7.7 93 537-655 728-823 (1706)
242 1iqp_A RFCS; clamp loader, ext 73.7 6.7 0.00023 46.8 8.8 18 543-560 48-65 (327)
243 2gno_A DNA polymerase III, gam 73.5 13 0.00045 44.6 11.2 33 624-656 64-96 (305)
244 3i4u_A ATP-dependent RNA helic 73.5 2.5 8.6E-05 50.0 4.8 48 997-1049 17-64 (270)
245 2orw_A Thymidine kinase; TMTK, 73.5 3.3 0.00011 46.0 5.5 39 540-579 2-40 (184)
246 4dez_A POL IV 1, DNA polymeras 73.2 3.8 0.00013 50.4 6.6 40 1231-1270 178-217 (356)
247 3cmu_A Protein RECA, recombina 73.1 5.9 0.0002 58.5 9.3 113 537-675 728-856 (2050)
248 2w58_A DNAI, primosome compone 72.7 3.2 0.00011 46.2 5.2 35 542-577 55-89 (202)
249 1pzn_A RAD51, DNA repair and r 72.4 3.7 0.00013 50.4 6.1 42 537-578 127-173 (349)
250 2iut_A DNA translocase FTSK; n 72.0 15 0.00052 47.7 11.9 27 540-566 213-239 (574)
251 1sxj_C Activator 1 40 kDa subu 71.7 9.4 0.00032 46.3 9.6 18 543-560 48-65 (340)
252 2eyq_A TRCF, transcription-rep 71.4 13 0.00046 52.6 12.2 83 774-892 647-730 (1151)
253 1sxj_E Activator 1 40 kDa subu 70.4 7.5 0.00026 47.1 8.3 25 542-567 37-61 (354)
254 2qgz_A Helicase loader, putati 70.3 3.6 0.00012 49.6 5.3 36 541-577 152-188 (308)
255 3cf2_A TER ATPase, transitiona 69.6 7.2 0.00024 52.9 8.4 22 538-559 235-256 (806)
256 1ypw_A Transitional endoplasmi 69.5 7.7 0.00026 53.0 8.9 23 538-560 235-257 (806)
257 2dhr_A FTSH; AAA+ protein, hex 69.3 13 0.00044 47.9 10.3 20 541-560 64-83 (499)
258 2owo_A DNA ligase; protein-DNA 68.3 3.6 0.00012 54.4 5.0 64 1217-1295 435-499 (671)
259 1y97_A Three prime repair exon 67.8 6.6 0.00023 45.2 6.7 97 1584-1726 98-210 (238)
260 3oiy_A Reverse gyrase helicase 66.4 12 0.00042 46.3 9.3 65 777-878 62-126 (414)
261 1msw_D DNA-directed RNA polyme 64.9 65 0.0022 44.0 16.1 102 1943-2045 542-708 (883)
262 1vma_A Cell division protein F 64.7 9.7 0.00033 45.8 7.5 58 540-601 103-162 (306)
263 3osn_A DNA polymerase IOTA; ho 62.4 8.4 0.00029 48.5 6.6 39 1232-1270 235-273 (420)
264 1p9r_A General secretion pathw 61.6 6.9 0.00024 49.2 5.6 36 540-576 166-201 (418)
265 1e9r_A Conjugal transfer prote 61.6 6.6 0.00023 49.4 5.5 44 540-584 52-95 (437)
266 2px0_A Flagellar biosynthesis 61.0 7.3 0.00025 46.6 5.4 47 540-586 104-152 (296)
267 2oap_1 GSPE-2, type II secreti 60.1 5.1 0.00017 51.8 4.1 33 525-558 245-277 (511)
268 2eyu_A Twitching motility prot 60.1 7.5 0.00026 45.7 5.2 37 538-575 22-59 (261)
269 3n70_A Transport activator; si 59.4 4.3 0.00015 42.9 2.7 22 539-560 22-43 (145)
270 3gqc_A DNA repair protein REV1 59.0 8.3 0.00028 49.6 5.7 40 1231-1270 315-354 (504)
271 1kgd_A CASK, peripheral plasma 58.5 5.6 0.00019 43.6 3.6 22 539-560 3-24 (180)
272 1jx4_A DNA polymerase IV (fami 58.3 6 0.00021 48.6 4.1 40 1231-1270 178-217 (352)
273 3gfk_B DNA-directed RNA polyme 57.2 8.3 0.00029 36.9 3.9 44 1239-1294 23-66 (79)
274 3hgt_A HDA1 complex subunit 3; 57.1 29 0.00098 42.0 9.5 127 764-938 110-243 (328)
275 4glx_A DNA ligase; inhibitor, 57.1 7.8 0.00027 50.6 5.0 64 1217-1295 435-499 (586)
276 1wlj_A Interferon stimulated g 57.0 11 0.00037 41.9 5.6 97 1583-1728 71-171 (189)
277 2kz3_A Putative uncharacterize 56.8 21 0.00071 34.6 6.7 36 1235-1270 8-43 (83)
278 3cf2_A TER ATPase, transitiona 56.6 8.9 0.00031 52.0 5.6 23 538-560 508-530 (806)
279 2fna_A Conserved hypothetical 56.5 55 0.0019 39.0 12.3 19 542-560 31-49 (357)
280 3bq0_A POL IV, DBH, DNA polyme 55.8 6.2 0.00021 48.5 3.7 40 1231-1270 179-218 (354)
281 3co5_A Putative two-component 55.7 4.6 0.00016 42.6 2.2 21 539-559 25-45 (143)
282 2gui_A DNA polymerase III epsi 55.6 15 0.00053 40.7 6.6 96 1583-1724 83-183 (194)
283 1dgs_A DNA ligase; AMP complex 55.5 3.7 0.00013 54.3 1.6 64 1217-1295 430-494 (667)
284 2ewv_A Twitching motility prot 55.5 9.1 0.00031 47.3 5.1 38 538-576 133-171 (372)
285 1im4_A DBH; DNA polymerase PAL 54.8 3.6 0.00012 47.2 1.2 37 1231-1267 184-220 (221)
286 3vaa_A Shikimate kinase, SK; s 54.5 7 0.00024 43.5 3.5 25 538-562 22-46 (199)
287 2ffh_A Protein (FFH); SRP54, s 54.4 19 0.00064 45.4 7.7 47 540-587 97-145 (425)
288 1ls1_A Signal recognition part 54.4 18 0.00061 43.2 7.3 44 540-584 97-142 (295)
289 3tau_A Guanylate kinase, GMP k 54.1 7.1 0.00024 43.9 3.5 21 540-560 7-27 (208)
290 1zp6_A Hypothetical protein AT 54.0 6.7 0.00023 43.0 3.2 23 538-560 6-28 (191)
291 3a8t_A Adenylate isopentenyltr 53.3 6.6 0.00023 47.8 3.3 20 540-559 39-58 (339)
292 4f4y_A POL IV, DNA polymerase 53.3 6.1 0.00021 48.8 3.0 40 1231-1270 179-218 (362)
293 3trf_A Shikimate kinase, SK; a 53.2 7.5 0.00026 42.4 3.4 21 541-561 5-25 (185)
294 3jvv_A Twitching mobility prot 53.0 12 0.00041 46.0 5.6 37 539-576 121-158 (356)
295 2j37_W Signal recognition part 51.4 19 0.00065 46.3 7.2 46 541-587 101-148 (504)
296 2j41_A Guanylate kinase; GMP, 50.6 8.9 0.00031 42.5 3.6 23 538-560 3-25 (207)
297 2qor_A Guanylate kinase; phosp 49.8 9 0.00031 42.8 3.5 23 538-560 9-31 (204)
298 1v5w_A DMC1, meiotic recombina 49.7 3.5 0.00012 50.5 0.0 57 1231-1299 25-83 (343)
299 1qhx_A CPT, protein (chloramph 49.7 9.6 0.00033 41.2 3.6 20 541-560 3-22 (178)
300 3arc_U Photosystem II 12 kDa e 49.5 6.8 0.00023 39.1 2.0 34 1228-1261 23-57 (97)
301 2l8b_A Protein TRAI, DNA helic 49.3 43 0.0015 37.2 8.5 57 527-585 37-95 (189)
302 3iij_A Coilin-interacting nucl 48.5 10 0.00035 41.3 3.5 24 538-561 8-31 (180)
303 4ddu_A Reverse gyrase; topoiso 48.5 22 0.00077 50.1 7.8 82 775-893 117-203 (1104)
304 3ney_A 55 kDa erythrocyte memb 48.2 10 0.00035 42.6 3.6 23 538-560 16-38 (197)
305 3sgi_A DNA ligase; HET: DNA AM 47.7 3.9 0.00013 53.4 0.0 50 1234-1296 532-581 (615)
306 3u3y_B Three prime repair exon 47.6 22 0.00075 42.9 6.5 32 1583-1614 102-136 (314)
307 2yvu_A Probable adenylyl-sulfa 47.5 16 0.00055 39.9 5.0 37 539-576 11-47 (186)
308 3exa_A TRNA delta(2)-isopenten 47.2 9.5 0.00033 46.0 3.2 19 541-559 3-21 (322)
309 3tr0_A Guanylate kinase, GMP k 47.0 11 0.00037 41.8 3.5 22 539-560 5-26 (205)
310 2gza_A Type IV secretion syste 46.8 8.8 0.0003 47.2 3.0 22 538-559 172-193 (361)
311 3lw7_A Adenylate kinase relate 46.7 10 0.00034 40.4 3.1 20 542-561 2-21 (179)
312 2ze6_A Isopentenyl transferase 46.5 9.3 0.00032 44.5 3.0 19 543-561 3-21 (253)
313 4ag6_A VIRB4 ATPase, type IV s 46.4 17 0.00056 45.1 5.4 42 539-581 33-74 (392)
314 2aq4_A DNA repair protein REV1 46.3 13 0.00043 47.1 4.4 40 1231-1270 241-283 (434)
315 1y63_A LMAJ004144AAA protein; 46.0 11 0.00039 41.2 3.5 22 539-560 8-29 (184)
316 1z3e_B DNA-directed RNA polyme 45.9 27 0.00091 33.0 5.4 44 1239-1294 16-59 (73)
317 3cf0_A Transitional endoplasmi 45.2 12 0.0004 44.8 3.6 23 538-560 46-68 (301)
318 1lvg_A Guanylate kinase, GMP k 45.1 11 0.00037 42.1 3.1 21 540-560 3-23 (198)
319 2bjv_A PSP operon transcriptio 44.9 12 0.00042 43.4 3.7 21 540-560 28-48 (265)
320 1nks_A Adenylate kinase; therm 44.8 25 0.00084 38.2 6.0 35 543-579 3-37 (194)
321 1kag_A SKI, shikimate kinase I 44.7 12 0.0004 40.3 3.3 20 541-560 4-23 (173)
322 2duy_A Competence protein come 44.5 9.2 0.00031 36.0 2.0 31 1230-1260 26-57 (75)
323 3uie_A Adenylyl-sulfate kinase 44.5 19 0.00065 39.9 5.1 34 525-561 12-45 (200)
324 2r8r_A Sensor protein; KDPD, P 44.4 19 0.00064 41.4 5.0 34 542-576 7-40 (228)
325 3a00_A Guanylate kinase, GMP k 44.1 12 0.00041 41.2 3.3 20 541-560 1-20 (186)
326 1kht_A Adenylate kinase; phosp 44.0 13 0.00043 40.6 3.4 21 541-561 3-23 (192)
327 3kb2_A SPBC2 prophage-derived 43.9 12 0.00042 39.9 3.2 19 543-561 3-21 (173)
328 2rhm_A Putative kinase; P-loop 43.9 12 0.00042 40.8 3.3 22 540-561 4-25 (193)
329 2qmh_A HPR kinase/phosphorylas 43.8 12 0.00041 42.3 3.1 20 540-559 33-52 (205)
330 1u0j_A DNA replication protein 43.0 26 0.00089 41.3 6.0 45 511-559 73-122 (267)
331 3b85_A Phosphate starvation-in 42.6 19 0.00065 40.7 4.7 34 526-561 9-42 (208)
332 3foz_A TRNA delta(2)-isopenten 42.6 12 0.0004 45.2 3.0 18 542-559 11-28 (316)
333 1m7g_A Adenylylsulfate kinase; 42.6 30 0.001 38.6 6.4 49 525-577 12-61 (211)
334 1w36_B RECB, exodeoxyribonucle 42.4 24 0.00083 50.3 6.8 56 540-596 16-82 (1180)
335 2ztd_A Holliday junction ATP-d 42.0 13 0.00043 42.4 3.0 54 1233-1298 90-145 (212)
336 2o3f_A Putative HTH-type trans 41.7 30 0.001 35.1 5.6 46 1164-1223 35-80 (111)
337 3cm0_A Adenylate kinase; ATP-b 41.6 12 0.00041 40.8 2.7 22 540-561 3-24 (186)
338 4fcw_A Chaperone protein CLPB; 41.4 16 0.00056 43.2 4.1 34 542-576 48-81 (311)
339 4eun_A Thermoresistant glucoki 41.4 15 0.00051 40.9 3.5 22 540-561 28-49 (200)
340 1knq_A Gluconate kinase; ALFA/ 41.3 14 0.00047 39.9 3.2 21 540-560 7-27 (175)
341 4gp7_A Metallophosphoesterase; 41.3 11 0.00039 40.8 2.5 23 538-560 6-28 (171)
342 1tf7_A KAIC; homohexamer, hexa 41.3 20 0.00067 46.4 5.1 41 537-577 35-75 (525)
343 3crm_A TRNA delta(2)-isopenten 41.1 12 0.00043 45.2 3.0 19 542-560 6-24 (323)
344 1z6g_A Guanylate kinase; struc 41.1 14 0.00049 41.8 3.4 23 538-560 20-42 (218)
345 3k4g_A DNA-directed RNA polyme 40.9 28 0.00097 33.9 4.8 44 1239-1294 19-62 (86)
346 1xjc_A MOBB protein homolog; s 39.6 27 0.00091 38.3 5.1 34 542-576 5-38 (169)
347 3spa_A Mtrpol, DNA-directed RN 39.4 8E+02 0.027 34.3 19.9 123 1933-2055 821-980 (1134)
348 1ex7_A Guanylate kinase; subst 39.4 15 0.00052 40.9 3.1 17 542-558 2-18 (186)
349 4a74_A DNA repair and recombin 39.2 15 0.00052 41.2 3.2 26 537-562 21-46 (231)
350 3hws_A ATP-dependent CLP prote 39.2 15 0.00051 44.9 3.4 21 540-560 50-70 (363)
351 3lnc_A Guanylate kinase, GMP k 38.9 12 0.00042 42.5 2.4 23 538-560 24-46 (231)
352 1zu4_A FTSY; GTPase, signal re 38.6 25 0.00084 42.6 5.0 38 539-577 103-140 (320)
353 1znw_A Guanylate kinase, GMP k 38.6 17 0.0006 40.6 3.5 23 538-560 17-39 (207)
354 1ly1_A Polynucleotide kinase; 38.6 15 0.00052 39.4 3.0 19 542-560 3-21 (181)
355 2c95_A Adenylate kinase 1; tra 38.6 17 0.00058 39.8 3.4 23 539-561 7-29 (196)
356 1zuh_A Shikimate kinase; alpha 38.4 17 0.00058 39.0 3.3 20 542-561 8-27 (168)
357 3uk6_A RUVB-like 2; hexameric 38.1 16 0.00055 44.5 3.4 21 540-560 69-89 (368)
358 1gku_B Reverse gyrase, TOP-RG; 38.0 51 0.0017 46.4 8.8 75 769-877 89-163 (1054)
359 1ofh_A ATP-dependent HSL prote 37.8 17 0.00057 42.9 3.4 20 541-560 50-69 (310)
360 2pt7_A CAG-ALFA; ATPase, prote 37.6 11 0.00039 45.7 1.9 21 538-558 168-188 (330)
361 2v54_A DTMP kinase, thymidylat 37.6 19 0.00065 39.7 3.6 22 540-561 3-24 (204)
362 1tev_A UMP-CMP kinase; ploop, 37.2 17 0.00058 39.6 3.1 20 541-560 3-22 (196)
363 3d3q_A TRNA delta(2)-isopenten 37.1 16 0.00054 44.6 3.0 19 542-560 8-26 (340)
364 2v9p_A Replication protein E1; 36.8 25 0.00084 42.3 4.6 37 538-578 123-159 (305)
365 4ecq_A DNA polymerase ETA; tra 36.8 18 0.00063 45.6 3.7 40 1231-1270 253-293 (435)
366 1rj9_A FTSY, signal recognitio 36.5 30 0.001 41.5 5.3 37 540-577 101-137 (304)
367 3b9q_A Chloroplast SRP recepto 36.4 28 0.00097 41.6 5.1 39 538-577 97-135 (302)
368 2qt1_A Nicotinamide riboside k 36.4 19 0.00064 40.1 3.3 23 538-560 18-40 (207)
369 1via_A Shikimate kinase; struc 36.2 18 0.00063 39.0 3.1 20 542-561 5-24 (175)
370 3umf_A Adenylate kinase; rossm 36.1 19 0.00065 41.1 3.3 25 538-562 26-50 (217)
371 1s5l_U Photosystem II 12 kDa e 36.1 16 0.00056 38.2 2.5 34 1228-1261 60-94 (134)
372 2bdt_A BH3686; alpha-beta prot 36.1 16 0.00054 40.0 2.6 21 541-561 2-22 (189)
373 3fb4_A Adenylate kinase; psych 35.9 18 0.00063 40.4 3.2 19 543-561 2-20 (216)
374 3dl0_A Adenylate kinase; phosp 35.9 18 0.00063 40.4 3.2 19 543-561 2-20 (216)
375 3t61_A Gluconokinase; PSI-biol 35.8 19 0.00064 40.0 3.2 21 541-561 18-38 (202)
376 3iwf_A Transcription regulator 35.7 29 0.00098 35.1 4.2 43 1164-1220 31-73 (107)
377 1s96_A Guanylate kinase, GMP k 35.5 21 0.00071 40.7 3.5 23 538-560 13-35 (219)
378 1gvn_B Zeta; postsegregational 35.2 18 0.00063 42.9 3.2 22 540-561 32-53 (287)
379 1zd8_A GTP:AMP phosphotransfer 35.1 20 0.00069 40.6 3.4 22 540-561 6-27 (227)
380 2edu_A Kinesin-like protein KI 34.8 21 0.00073 35.3 3.1 44 1232-1295 41-89 (98)
381 1aky_A Adenylate kinase; ATP:A 34.7 22 0.00074 40.1 3.5 22 540-561 3-24 (220)
382 3c1y_A DNA integrity scanning 34.6 28 0.00096 42.7 4.6 55 1233-1300 317-371 (377)
383 2bwj_A Adenylate kinase 5; pho 34.3 21 0.00073 39.1 3.3 22 540-561 11-32 (199)
384 1pu6_A 3-methyladenine DNA gly 34.3 52 0.0018 37.5 6.6 47 1246-1301 54-106 (218)
385 3fe2_A Probable ATP-dependent 34.1 1.4E+02 0.0047 33.8 10.3 59 779-877 102-160 (242)
386 1ak2_A Adenylate kinase isoenz 34.1 23 0.00077 40.4 3.6 23 540-562 15-37 (233)
387 2iyv_A Shikimate kinase, SK; t 34.0 22 0.00074 38.7 3.3 20 542-561 3-22 (184)
388 3ly5_A ATP-dependent RNA helic 34.0 1.7E+02 0.0059 33.7 11.2 60 778-877 125-184 (262)
389 2plr_A DTMP kinase, probable t 34.0 21 0.00072 39.5 3.2 22 540-561 3-24 (213)
390 1c9k_A COBU, adenosylcobinamid 33.9 15 0.00052 40.7 2.0 42 544-590 2-43 (180)
391 2cdn_A Adenylate kinase; phosp 33.7 23 0.0008 39.1 3.5 22 540-561 19-40 (201)
392 3eph_A TRNA isopentenyltransfe 33.6 19 0.00064 45.0 2.9 18 542-559 3-20 (409)
393 1tue_A Replication protein E1; 33.6 22 0.00075 40.3 3.2 50 511-565 28-81 (212)
394 2p6n_A ATP-dependent RNA helic 33.4 73 0.0025 35.2 7.5 71 568-650 52-130 (191)
395 1zak_A Adenylate kinase; ATP:A 33.2 22 0.00076 40.0 3.3 21 541-561 5-25 (222)
396 3c8u_A Fructokinase; YP_612366 33.1 22 0.00074 39.8 3.2 20 540-559 21-40 (208)
397 3hjh_A Transcription-repair-co 33.0 45 0.0015 42.7 6.3 52 540-595 13-64 (483)
398 3sr0_A Adenylate kinase; phosp 33.0 22 0.00076 40.1 3.2 20 543-562 2-21 (206)
399 2z0h_A DTMP kinase, thymidylat 32.8 38 0.0013 36.9 5.1 32 543-575 2-33 (197)
400 1rz3_A Hypothetical protein rb 32.7 36 0.0012 37.7 4.9 36 540-576 21-56 (201)
401 2wwf_A Thymidilate kinase, put 32.6 24 0.00082 39.1 3.4 23 539-561 8-30 (212)
402 1e6c_A Shikimate kinase; phosp 32.5 23 0.00078 37.9 3.1 20 542-561 3-22 (173)
403 2c9o_A RUVB-like 1; hexameric 32.5 23 0.00079 44.9 3.6 22 538-559 60-81 (456)
404 3a4m_A L-seryl-tRNA(SEC) kinas 32.5 36 0.0012 39.6 5.0 35 541-576 4-38 (260)
405 1w0h_A 3'-5' exonuclease ERI1; 32.3 34 0.0011 38.1 4.6 32 1583-1614 86-123 (204)
406 3nwj_A ATSK2; P loop, shikimat 32.3 23 0.00078 41.3 3.2 22 540-561 47-68 (250)
407 1qf9_A UMP/CMP kinase, protein 32.1 23 0.00079 38.4 3.1 20 542-561 7-26 (194)
408 1cke_A CK, MSSA, protein (cyti 32.1 24 0.00083 39.6 3.4 21 541-561 5-25 (227)
409 3nbx_X ATPase RAVA; AAA+ ATPas 32.0 19 0.00065 46.3 2.7 23 538-560 38-60 (500)
410 1ojl_A Transcriptional regulat 32.0 20 0.00067 43.0 2.7 21 540-560 24-44 (304)
411 2xxa_A Signal recognition part 31.9 36 0.0012 42.9 5.2 46 541-587 100-148 (433)
412 1nn5_A Similar to deoxythymidy 31.9 25 0.00087 38.9 3.5 34 540-574 8-41 (215)
413 2pez_A Bifunctional 3'-phospho 31.9 24 0.00083 38.2 3.2 21 540-560 4-24 (179)
414 2og2_A Putative signal recogni 31.9 36 0.0012 41.8 5.1 39 538-577 154-192 (359)
415 3bs4_A Uncharacterized protein 31.7 36 0.0012 39.9 4.8 41 536-577 16-56 (260)
416 3e70_C DPA, signal recognition 31.7 36 0.0012 41.3 5.0 37 539-576 127-163 (328)
417 3ice_A Transcription terminati 31.5 1.2E+02 0.0041 37.7 9.4 29 538-567 171-199 (422)
418 3asz_A Uridine kinase; cytidin 31.4 24 0.00083 39.2 3.2 21 540-560 5-25 (211)
419 2r62_A Cell division protease 31.4 15 0.00051 42.6 1.5 22 539-560 42-63 (268)
420 1ixz_A ATP-dependent metallopr 31.3 26 0.00087 40.4 3.4 20 541-560 49-68 (254)
421 2v3c_C SRP54, signal recogniti 31.2 27 0.00091 44.1 3.8 91 542-655 100-193 (432)
422 2r44_A Uncharacterized protein 31.1 19 0.00066 43.2 2.5 23 538-560 43-65 (331)
423 2vli_A Antibiotic resistance p 30.8 22 0.00076 38.4 2.7 22 540-561 4-25 (183)
424 1tf7_A KAIC; homohexamer, hexa 30.7 35 0.0012 44.1 4.9 42 537-579 277-318 (525)
425 3of5_A Dethiobiotin synthetase 30.7 38 0.0013 38.7 4.8 36 542-578 5-41 (228)
426 3tlx_A Adenylate kinase 2; str 30.5 25 0.00087 40.5 3.2 23 540-562 28-50 (243)
427 2jaq_A Deoxyguanosine kinase; 30.2 27 0.00092 38.3 3.3 19 543-561 2-20 (205)
428 2pt5_A Shikimate kinase, SK; a 30.1 28 0.00095 37.1 3.3 19 543-561 2-20 (168)
429 3ber_A Probable ATP-dependent 30.1 2.5E+02 0.0087 31.9 11.7 59 779-877 111-169 (249)
430 1e4v_A Adenylate kinase; trans 30.1 26 0.00088 39.3 3.1 19 543-561 2-20 (214)
431 2yhs_A FTSY, cell division pro 29.8 40 0.0014 43.1 5.1 38 538-576 290-327 (503)
432 1g5t_A COB(I)alamin adenosyltr 29.8 49 0.0017 37.1 5.2 38 540-578 27-64 (196)
433 3be4_A Adenylate kinase; malar 29.7 29 0.00098 39.1 3.4 22 540-561 4-25 (217)
434 1t94_A Polymerase (DNA directe 29.6 50 0.0017 41.9 6.0 37 1231-1268 282-318 (459)
435 1j8m_F SRP54, signal recogniti 29.1 40 0.0014 40.2 4.7 92 541-654 98-192 (297)
436 1ukz_A Uridylate kinase; trans 29.0 29 0.00099 38.3 3.2 20 541-560 15-34 (203)
437 2x8a_A Nuclear valosin-contain 28.3 38 0.0013 39.8 4.3 19 541-559 44-62 (274)
438 1uf9_A TT1252 protein; P-loop, 28.1 30 0.001 38.0 3.2 21 541-561 8-28 (203)
439 2if2_A Dephospho-COA kinase; a 28.0 30 0.001 38.2 3.2 18 543-560 3-20 (204)
440 2pbr_A DTMP kinase, thymidylat 28.0 32 0.0011 37.4 3.3 32 543-575 2-33 (195)
441 1gtv_A TMK, thymidylate kinase 27.9 23 0.00077 39.4 2.1 18 543-560 2-19 (214)
442 3kta_A Chromosome segregation 27.7 36 0.0012 36.8 3.7 19 542-560 27-45 (182)
443 1np6_A Molybdopterin-guanine d 27.7 50 0.0017 36.2 4.8 30 542-572 7-36 (174)
444 4e22_A Cytidylate kinase; P-lo 27.6 32 0.0011 39.8 3.5 22 540-561 26-47 (252)
445 3pzp_A DNA polymerase kappa; D 27.1 49 0.0017 42.7 5.3 31 1231-1261 338-368 (517)
446 3fkq_A NTRC-like two-domain pr 27.1 85 0.0029 38.5 7.3 35 542-577 144-179 (373)
447 4e9f_A Methyl-CPG-binding doma 27.0 79 0.0027 34.3 6.1 46 1245-1300 54-99 (161)
448 1in4_A RUVB, holliday junction 26.8 31 0.001 41.8 3.2 19 542-560 52-70 (334)
449 1g8p_A Magnesium-chelatase 38 26.8 22 0.00076 42.7 1.9 20 541-560 45-64 (350)
450 1iy2_A ATP-dependent metallopr 26.7 34 0.0011 40.1 3.4 20 541-560 73-92 (278)
451 2jrt_A Uncharacterized protein 26.5 52 0.0018 32.6 4.1 33 1155-1187 36-68 (95)
452 2zan_A Vacuolar protein sortin 26.3 33 0.0011 43.3 3.5 21 540-560 166-186 (444)
453 3qxc_A Dethiobiotin synthetase 26.2 52 0.0018 38.1 4.8 37 541-578 21-58 (242)
454 1ye8_A Protein THEP1, hypothet 26.2 35 0.0012 37.4 3.3 18 543-560 2-19 (178)
455 4akg_A Glutathione S-transfera 26.1 63 0.0022 49.6 6.8 52 510-561 891-943 (2695)
456 2p5t_B PEZT; postsegregational 26.0 27 0.00091 40.5 2.3 22 539-560 30-51 (253)
457 3tif_A Uncharacterized ABC tra 26.0 33 0.0011 39.5 3.1 21 538-558 28-48 (235)
458 2bbw_A Adenylate kinase 4, AK4 25.9 36 0.0012 39.0 3.4 21 540-560 26-46 (246)
459 1t6n_A Probable ATP-dependent 25.8 1.2E+02 0.0043 33.5 7.9 60 780-877 83-142 (220)
460 3qf7_A RAD50; ABC-ATPase, ATPa 25.8 33 0.0011 42.2 3.2 20 543-562 25-44 (365)
461 4edh_A DTMP kinase, thymidylat 25.7 59 0.002 36.8 5.0 37 539-576 4-40 (213)
462 3pxg_A Negative regulator of g 25.4 34 0.0012 43.5 3.4 22 540-561 200-221 (468)
463 2hjv_A ATP-dependent RNA helic 25.4 1.2E+02 0.0042 32.1 7.4 71 569-651 34-112 (163)
464 3pxi_A Negative regulator of g 25.3 47 0.0016 44.9 4.9 18 543-560 523-540 (758)
465 2xb4_A Adenylate kinase; ATP-b 25.2 37 0.0013 38.4 3.3 19 543-561 2-20 (223)
466 1jjv_A Dephospho-COA kinase; P 25.0 37 0.0013 37.6 3.2 19 543-561 4-22 (206)
467 1f2t_A RAD50 ABC-ATPase; DNA d 24.6 40 0.0014 35.8 3.2 19 541-559 23-41 (149)
468 2q5c_A NTRC family transcripti 24.6 7.4E+02 0.025 27.3 14.2 112 569-722 3-119 (196)
469 2pl3_A Probable ATP-dependent 24.2 1.1E+02 0.0039 34.2 7.2 59 778-877 96-154 (236)
470 2cbz_A Multidrug resistance-as 24.1 37 0.0013 39.0 3.1 22 538-559 28-49 (237)
471 1noy_A Protein (DNA polymerase 24.0 4.1E+02 0.014 32.6 12.7 67 1652-1722 267-335 (388)
472 2f1r_A Molybdopterin-guanine d 23.9 27 0.00091 38.3 1.7 19 542-560 3-21 (171)
473 1g41_A Heat shock protein HSLU 23.3 41 0.0014 42.5 3.4 21 540-560 49-69 (444)
474 3bor_A Human initiation factor 23.1 1.3E+02 0.0045 33.9 7.5 60 779-877 98-157 (237)
475 1vht_A Dephospho-COA kinase; s 22.9 41 0.0014 37.6 3.1 21 541-561 4-24 (218)
476 2ius_A DNA translocase FTSK; n 22.9 72 0.0024 41.1 5.6 27 538-564 164-190 (512)
477 2i5h_A Hypothetical protein AF 22.8 52 0.0018 36.8 3.6 34 1227-1260 128-165 (205)
478 2i3b_A HCR-ntpase, human cance 22.7 45 0.0015 37.0 3.3 20 541-560 1-20 (189)
479 1vec_A ATP-dependent RNA helic 22.7 2.1E+02 0.0072 31.1 8.9 60 779-877 71-130 (206)
480 2jeo_A Uridine-cytidine kinase 22.6 43 0.0015 38.4 3.3 23 538-560 22-44 (245)
481 3vkg_A Dynein heavy chain, cyt 22.2 71 0.0024 49.7 6.1 52 509-560 873-925 (3245)
482 2ff7_A Alpha-hemolysin translo 22.1 42 0.0014 38.9 3.0 22 538-559 32-53 (247)
483 3gfo_A Cobalt import ATP-bindi 22.1 42 0.0014 39.6 3.0 22 538-559 31-52 (275)
484 3nh6_A ATP-binding cassette SU 22.0 34 0.0011 41.1 2.2 22 538-559 77-98 (306)
485 2pze_A Cystic fibrosis transme 22.0 43 0.0015 38.3 3.0 22 538-559 31-52 (229)
486 3m6a_A ATP-dependent protease 22.0 44 0.0015 43.4 3.4 21 540-560 107-127 (543)
487 2jgn_A DBX, DDX3, ATP-dependen 21.9 1.2E+02 0.0041 33.2 6.5 84 551-648 29-120 (185)
488 1htw_A HI0065; nucleotide-bind 21.9 50 0.0017 35.5 3.3 22 538-559 30-51 (158)
489 2d2e_A SUFC protein; ABC-ATPas 21.8 50 0.0017 38.3 3.5 22 538-559 26-47 (250)
490 2zu0_C Probable ATP-dependent 21.7 50 0.0017 38.7 3.6 22 538-559 43-64 (267)
491 1zbh_A 3'-5' exonuclease ERI1; 21.7 1.2E+02 0.0041 36.1 6.9 32 1583-1614 154-191 (299)
492 1sgw_A Putative ABC transporte 21.7 43 0.0015 38.0 2.8 22 538-559 32-53 (214)
493 2ghi_A Transport protein; mult 21.6 44 0.0015 39.0 3.1 22 538-559 43-64 (260)
494 4eaq_A DTMP kinase, thymidylat 21.5 49 0.0017 37.8 3.3 35 539-575 24-58 (229)
495 1ihu_A Arsenical pump-driving 21.3 72 0.0025 41.7 5.4 36 541-577 8-43 (589)
496 3pxi_A Negative regulator of g 21.3 44 0.0015 45.2 3.4 22 540-561 200-221 (758)
497 3auy_A DNA double-strand break 21.3 44 0.0015 41.0 3.1 21 540-560 24-44 (371)
498 1mv5_A LMRA, multidrug resista 21.2 42 0.0014 38.7 2.7 22 538-559 25-46 (243)
499 1kea_A Possible G-T mismatches 21.0 1.2E+02 0.004 34.6 6.4 41 1252-1301 64-104 (221)
500 4g1u_C Hemin import ATP-bindin 21.0 46 0.0016 39.1 3.0 22 538-559 34-55 (266)
No 1
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=100.00 E-value=1.4e-116 Score=1142.72 Aligned_cols=559 Identities=31% Similarity=0.428 Sum_probs=502.7
Q ss_pred CeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHHHH
Q 000107 1509 HEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKR 1588 (2191)
Q Consensus 1509 ~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1588 (2191)
...++|+++.+. .....+++|++||+++ .+|||++.+. ..++.
T Consensus 30 ~~~aldtE~~~~----~~~~a~Lvgisla~~~-~a~yIp~~~~--------------------------------~~l~~ 72 (592)
T 3pv8_A 30 DKAALVVEVVEE----NYHDAPIVGIAVVNEH-GRFFLRPETA--------------------------------LADPQ 72 (592)
T ss_dssp SEEEEEEECCSS----SCTTCCCCEEEEEETT-EEEEECHHHH--------------------------------TTCHH
T ss_pred cCcEEEEEEcCC----ccCcccEEEEEEEcCC-ceEEEccchh--------------------------------hHHHH
Confidence 456889988643 1222368999999877 4899987421 01246
Q ss_pred HHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCCCC
Q 000107 1589 IGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDER 1668 (2191)
Q Consensus 1589 L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~~~ 1668 (2191)
|+++|+++.+.|++||+|+|+++|+++|+.++++ .||||||+|||+|+...
T Consensus 73 Lk~lLed~~i~KV~hn~K~Dl~vL~~~Gi~l~g~-----------------------------~fDTmLAAYLL~p~~~~ 123 (592)
T 3pv8_A 73 FVAWLGDETKKKSMFDSKRAAVALKWKGIELCGV-----------------------------SFDLLLAAYLLDPAQGV 123 (592)
T ss_dssp HHHHHTCTTSEEEESSHHHHHHHHHHTTCCCCCE-----------------------------EEEHHHHHHHHCGGGCC
T ss_pred HHHHHhCCCCeEEEechHHHHHHHHHcCCCCCCc-----------------------------cchHHHHHHHcCCCCCC
Confidence 8999999999999999999999999999877643 58999999999998777
Q ss_pred CCchhHHHHHHHhhChHH---HHHhhccCchh-hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 000107 1669 SSNPNLEKEVKKRLSSEA---AAAANRSGRWK-NQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELIEALLNIEIPLVN 1744 (2191)
Q Consensus 1669 ~~l~~L~~~~~~~l~~e~---~~~~~~~g~~~-~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~~~L~~l~~~iEmpl~~ 1744 (2191)
|+++ .++.++++.+. ....++ |... ....+.+..|++.|+.++++|+..|.++|++.++.++|.++|||+++
T Consensus 124 ~~L~---~La~~yLg~~l~~~ee~~gk-g~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~l~~l~~~~E~pl~~ 199 (592)
T 3pv8_A 124 DDVA---AAAKMKQYEAVRPDEAVYGK-GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSS 199 (592)
T ss_dssp CSHH---HHHGGGTCCSSCCHHHHHCS-GGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTHHHHHH
T ss_pred CCHH---HHHHHHcCCCCchHHHhcCc-cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhHHHH
Confidence 7654 45666665432 222221 1111 11224567899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHH
Q 000107 1745 VLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHC 1824 (2191)
Q Consensus 1745 vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~v 1824 (2191)
+|++||.+||+||.+.+.++..++.+++++++++||+++|.+||++||+||+++||++||||+. +|+|++|||+++|
T Consensus 200 vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~g~~fN~~Spkql~~~Lf~~lgl~~~---kktktg~st~~~v 276 (592)
T 3pv8_A 200 ILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVL---KKTKTGYSTSADV 276 (592)
T ss_dssp HHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCC---CEETTEECCCHHH
T ss_pred HHHHHhcCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCCC---CCCCCCCCchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999865 3455569999999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCcccccccccccccc
Q 000107 1825 LDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSN 1904 (2191)
Q Consensus 1825 L~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~ 1904 (2191)
|++|+..||++..||+||++.|+++||+++++++++ ..+|||||+|+|++|+||||||++||||||| +++
T Consensus 277 L~~l~~~~p~~~~ile~R~l~kl~sty~~~l~~~v~----~~~gRih~~~~q~~t~TGRlss~~PNlQniP------~~~ 346 (592)
T 3pv8_A 277 LEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVR----PATKKVHTIFNQALTQTGRLSSTEPNLQNIP------IRL 346 (592)
T ss_dssp HHHTTTTCTHHHHHHHHHHHHHHHHHHTHHHHHHSB----TTTTEECCEEESSCCSSSCCEEESSCCSSCC------CSS
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhc----cCCCEECceeeeCCceeeCcccccCCccccC------cCc
Confidence 999999999999999999999999999999987763 3379999999999999999999999999999 456
Q ss_pred ccccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCC
Q 000107 1905 EDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVG 1984 (2191)
Q Consensus 1905 ~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt 1984 (2191)
+.|+ .||+||+|.++||+||+|||||||||||||||+|+.|+++|++ |.|||+.||+.|||+|+++||
T Consensus 347 ~~g~-----------~iR~~Fv~~~~g~~lv~aDySqiElRilAhls~D~~l~~af~~-g~Dih~~tA~~~fg~~~~~vt 414 (592)
T 3pv8_A 347 EEGR-----------KIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRR-DLDIHTKTAMDIFQVSEDEVT 414 (592)
T ss_dssp HHHH-----------GGGGGEECSSTTEEEEEEEETTHHHHHHHHHHTCHHHHHHHHT-TCCHHHHHHHHHHSCCTTTCC
T ss_pred hhhH-----------hhhhEEEecCCCCEEEEechhhHHHHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHhCCChhhCC
Confidence 6777 7999999834999999999999999999999999999999998 899999999999999999999
Q ss_pred hhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCeeecCcccC
Q 000107 1985 SQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKF 2064 (2191)
Q Consensus 1985 ~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s 2064 (2191)
+++|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|+++++++|+++|||+|++|||||+|+|++
T Consensus 415 ~~~R~~aK~~~fg~~YG~~~~~La~~l~i~~~eA~~~i~~~~~~~p~v~~~~~~~~~~a~~~Gyv~Tl~GRrr~~p~i~s 494 (592)
T 3pv8_A 415 PNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITS 494 (592)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGC
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHcCCCHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHcCCEECCCCCeeeCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHH
Q 000107 2065 GNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKE 2144 (2191)
Q Consensus 2065 ~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~ 2144 (2191)
.|...|+++||+|+|+|||||||||+|.||+++++.|.+. +.+++|+|||||||+||||++++++
T Consensus 495 ~n~~~r~~~eR~a~N~~iQGsaAdi~k~ami~i~~~l~~~---------------~~~~~l~lqVHDElv~ev~~~~~~~ 559 (592)
T 3pv8_A 495 RNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEE---------------RLQAHLLLQVHDELILEAPKEEMER 559 (592)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------TCCCEEEEECSSEEEEEEEGGGHHH
T ss_pred cchhhhhhhhhhhhchhhhhHHHHHHHHHHHHHHHHHHhc---------------CCCceEEEEEcceeEEEeCHHHHHH
Confidence 9999999999999999999999999999999999999874 4578999999999999999999999
Q ss_pred HHHHHHHHHhcccCcccceEEEeeccCCccccC
Q 000107 2145 AVSLVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2145 v~~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
++.+|+++||+|+.|.|||.|++++|+||+++|
T Consensus 560 ~~~~v~~~Me~a~~l~VPl~v~~~~G~~W~ea~ 592 (592)
T 3pv8_A 560 LCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK 592 (592)
T ss_dssp HHHHHHHHHHTSSCCSSCCCEEEEEESSTTTCC
T ss_pred HHHHHHHHHhhcccCCCcEEEEecccCCHHHhC
Confidence 999999999999999999999999999999986
No 2
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=100.00 E-value=1.4e-112 Score=1122.21 Aligned_cols=589 Identities=29% Similarity=0.449 Sum_probs=517.2
Q ss_pred eeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCC
Q 000107 1490 NAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSD 1569 (2191)
Q Consensus 1490 ~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~ 1569 (2191)
.++++...+..|++.+...+.++||+|+++.. ....+++|+++++.++.++|+|+.+...+.+
T Consensus 8 ~~I~~~~~l~~~~~~l~~~~~va~DtEttgl~----~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~------------- 70 (605)
T 2kfn_A 8 VTILDEETLKAWIAKLEKAPVFAFDTETDSLD----NISANLVGLSFAIEPGVAAYIPVAHDYLDAP------------- 70 (605)
T ss_dssp EECCSHHHHHHHHHHHHTSSSEEEEEEESCSC----TTTCCEEEEEEEEETTEEEEEECCCCSTTCC-------------
T ss_pred EEecCHHHHHHHHHhcccCCeEEEEEecCCCC----cccCceEEEEEEEcCCcEEEEeccccccccc-------------
Confidence 45556678888898887778899999987541 1123699999999888899998865211000
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCC
Q 000107 1570 KNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHL 1649 (2191)
Q Consensus 1570 ~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1649 (2191)
.-++ +.+.+..|.++|+++.+.|++||+|||+.+|.++|+.+.+.
T Consensus 71 -~~l~-------~~~vl~~L~~~L~d~~i~kV~hnak~D~~~L~~~Gi~l~~~--------------------------- 115 (605)
T 2kfn_A 71 -DQIS-------RERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGI--------------------------- 115 (605)
T ss_dssp -CCCC-------HHHHHHHHHHHHTCTTSCEEESSHHHHHHHHHTTTCCCCCE---------------------------
T ss_pred -cccC-------HHHHHHHHHHHHcCCCCeEEEECcHHHHHHHHHCCCCCCCc---------------------------
Confidence 0011 13456789999999999999999999999999988866532
Q ss_pred CccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHH---HHHhhccC---chhh-hhHHHHhhhHHHHHHHHHHHHHHH
Q 000107 1650 KDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEA---AAAANRSG---RWKN-QMRRAAHNGCCRRVAQTRALCSVL 1722 (2191)
Q Consensus 1650 ~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~---~~~~~~~g---~~~~-~~~~~~~~ya~~Da~~t~~L~~~L 1722 (2191)
++|||+|+|||+|+..+++++.| +.++++... ....+++. .|.. ++ +.+..||+.|+.++++|+..|
T Consensus 116 --~~DT~laayLL~p~~~~~~L~~L---a~~~Lg~~~i~~~~~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L 189 (605)
T 2kfn_A 116 --AFDTMLESYILNSVAGRHDMDSL---AERWLKHKTITFEEIAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKM 189 (605)
T ss_dssp --EEEHHHHHHHHCTTSSCCSHHHH---HHHHSCCCCCCHHHHHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHhCCCCCCCCHHHH---HHHhcCCCcccHHHHhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999998777765554 455543321 11222111 2322 12 346789999999999999999
Q ss_pred HHHHHH-HHHHHHHHhhhhhHHHHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHH
Q 000107 1723 WKLLVS-EELIEALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYG 1801 (2191)
Q Consensus 1723 ~~~L~~-~~L~~l~~~iEmpl~~vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~ 1801 (2191)
.++|.+ .++.++|.++|||++.+|++||.+||+||.+.+.++..++.+++++++++||+++|.+||++||+||+++||+
T Consensus 190 ~~~L~~~~~l~~L~~~iE~Pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~ 269 (605)
T 2kfn_A 190 WPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFE 269 (605)
T ss_dssp HHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSCTTTTSHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCC-CCCCCcHHHHHHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeecccccccccc
Q 000107 1802 HLKLPIPEGHNKGK-QHPSTDKHCLDLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTA 1880 (2191)
Q Consensus 1802 ~l~lp~~~~~~k~k-~~~ST~~~vL~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTa 1880 (2191)
+||||+.+ |+| |.|||++++|++|+..||+++.||+||+++|+++||+++++++++ ..+|||||+|+|+||+
T Consensus 270 ~lglp~~k---ktk~g~~st~~~vL~~l~~~~p~~~~il~~r~l~Kl~sty~~~l~~~v~----~~~grih~~~~~~~t~ 342 (605)
T 2kfn_A 270 KQGIKPLK---KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMIN----PKTGRVHTSYHQAVTA 342 (605)
T ss_dssp TSSCSCCC---CCC----TTTCCHHHHHTTTCSHHHHHHHHHHHHHHHHHTTTTGGGGBC----TTTSSBCCEEESSCCS
T ss_pred hcCCCCCC---cCCCCCccccHHHHHHHHhcChHHHHHHHHHHHHHHhccHHHHHHHhhC----cccCeecceeEecccc
Confidence 99998643 333 447999999999988899999999999999999999999876653 2349999999999999
Q ss_pred ccccccCCCCccccccccccccccccccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHh
Q 000107 1881 TGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLL 1960 (2191)
Q Consensus 1881 TGRlSss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af 1960 (2191)
||||||++||||||| ++++.|+ .||+||+|+ +||+||+|||||||||||||||+|+.|+++|
T Consensus 343 TGRlss~~PnlQniP------~r~~~g~-----------~iR~~f~~~-~g~~lv~aDysqiElRilA~ls~d~~l~~af 404 (605)
T 2kfn_A 343 TGRLSSTDPNLQNIP------VRNEEGR-----------RIRQAFIAP-EDYVIVSADYSQIELRIMAHLSRDKGLLTAF 404 (605)
T ss_dssp SSCCEEESSCGGGSC------SSSHHHH-----------HHHHTBBCC-TTEEEEEEEETTHHHHHHHHHTTCHHHHHHH
T ss_pred cCceecCCCCcccCC------CCccchH-----------hHhheeeCC-CCCEEEEechhhhHHHHHHHHcCCHHHHHHH
Confidence 999999999999999 4566777 799999996 9999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHH
Q 000107 1961 SKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAV 2040 (2191)
Q Consensus 1961 ~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~ 2040 (2191)
++ |.|||+.||+.|||+|+++||+++|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|+++++
T Consensus 405 ~~-g~Dih~~tA~~~f~~~~e~vt~~~R~~aK~~~fg~~YG~~~~~la~~l~i~~~ea~~~i~~~~~~~p~v~~~~~~~~ 483 (605)
T 2kfn_A 405 AE-GKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 483 (605)
T ss_dssp HT-TCCHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTTCCTTHHHHHHTCCTTTHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hc-CCCHHHHHHHHHhCCChhhcCHHHHhhhhhhhccccccCCHHHHHHHcCCCHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 98 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEcccCCeeecCcccCCChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccC
Q 000107 2041 SSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLK 2120 (2191)
Q Consensus 2041 ~~a~~~GyV~Tl~GRrr~lp~i~s~~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~ 2120 (2191)
+.|+++|||+|++|||||+|+|+++|...|+.++|+|+|+|||||||||+|.||+++++.+.+. +
T Consensus 484 ~~a~~~g~v~tl~GRrr~~p~~~s~~~~~r~~~~r~a~N~~iQgsaaDi~k~am~~~~~~l~~~---------------~ 548 (605)
T 2kfn_A 484 AQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAE---------------Q 548 (605)
T ss_dssp HHHHHHSEEECTTCCEEECTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------C
T ss_pred HHHHHcCcEECCCCCeEECCcccCCCchhhhhhhhhHhhHHhHHHHHHHHHHHHHHHHHHHHhc---------------C
Confidence 9999999999999999999999999999999999999999999999999999999999998764 4
Q ss_pred CceeEEEEecceeeeeeChhhHHHHHHHHHHHHhcccCcccceEEEeeccCCccccC
Q 000107 2121 GRCRLLLQVHDELVLEVDPSVIKEAVSLVQKCMESAALLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2121 ~~~~lvlqVHDELv~Evp~~~~~~v~~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
.+++|+|||||||+||||++++++++.+|+++|++++.|.|||.|++++|+||+++|
T Consensus 549 ~~~~~~l~vHDEl~~ev~~~~~~~~~~~v~~~M~~~~~l~vpl~v~~~~g~~W~~~~ 605 (605)
T 2kfn_A 549 PRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQAH 605 (605)
T ss_dssp CSEEEEEEETTEEEEEEETTTHHHHHHHHHHHHHHSSCSSSCCCEEEEEESBHHHHC
T ss_pred CCceeeEEeccEEEEEcCHHHHHHHHHHHHHHHhccCCCCCeEEEecccCCChHhcC
Confidence 578999999999999999999999999999999999999999999999999999986
No 3
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=100.00 E-value=4.8e-112 Score=1089.99 Aligned_cols=528 Identities=29% Similarity=0.446 Sum_probs=479.0
Q ss_pred CeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHHHH
Q 000107 1509 HEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRWKR 1588 (2191)
Q Consensus 1509 ~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1588 (2191)
+.+++|+|+.+. ......++|+++|+ ++.+||++ . .+..
T Consensus 11 ~~valDtE~~~~----~~~~a~Lvgi~la~-~~~a~~i~---~---------------------------------~l~~ 49 (540)
T 4dfk_A 11 EGAFVGFVLSRK----EPMWADLLALAAAR-GGRVHRAP---E---------------------------------PYKA 49 (540)
T ss_dssp TTCEEEEEESSS----CTTTCCEEEEEEEE-TTEEEECS---S---------------------------------HHHH
T ss_pred CceEEEEEecCC----ccCcccEEEEEEEc-CCEEEEeh---h---------------------------------hHHH
Confidence 458999999743 12233699999997 45677764 0 1246
Q ss_pred HHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCCCC
Q 000107 1589 IGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDER 1668 (2191)
Q Consensus 1589 L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~~~ 1668 (2191)
|+++|++ +.|++||+|||+. ++|+.+. . .||||+|+|||+|+ .
T Consensus 50 l~~~l~d--~~kV~hn~K~Dl~---~~Gi~~~-~-----------------------------~fDT~laAyLL~p~--~ 92 (540)
T 4dfk_A 50 LRDLKEA--RGLLAKDLSVLAL---REGLGLP-P-----------------------------GDDPMLLAYLLDPS--N 92 (540)
T ss_dssp HTTCSSB--CSTTHHHHHHHHH---HTTCCCC-B-----------------------------CCCHHHHHHHHCTT--C
T ss_pred HHHHHcC--CCEEEeccHHHHH---HcCCCCC-c-----------------------------ceeHHHHHHHhCCC--C
Confidence 7889988 8899999999998 6676543 2 58999999999997 6
Q ss_pred CCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHH
Q 000107 1669 SSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLL-VSEELIEALLNIEIPLVNVLA 1747 (2191)
Q Consensus 1669 ~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L-~~~~L~~l~~~iEmpl~~vLa 1747 (2191)
|+++ .++.++++. .| .++..|+.++++|+..|.++| ++.++.++|.++|||++.+|+
T Consensus 93 ~~L~---~La~~yl~~--------~g-----------k~a~~DA~~t~~L~~~L~~~L~~~~~~~~~~~~iE~pl~~vl~ 150 (540)
T 4dfk_A 93 TTPE---GVARRYGGE--------WT-----------EEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLA 150 (540)
T ss_dssp CCHH---HHHHHHTSC--------CC-----------SCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTHHHHHHHHH
T ss_pred CCHH---HHHHHHhhh--------hc-----------cchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHH
Confidence 7644 455555543 11 135689999999999999999 788999999999999999999
Q ss_pred HHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHH-H
Q 000107 1748 DMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCL-D 1826 (2191)
Q Consensus 1748 ~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL-~ 1826 (2191)
+||.+||+||.+.++++..++.+++++++++||+++|.+||++||+||+++||++||||+++. ++|+++||++++| +
T Consensus 151 ~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lgl~~~~k--t~ktg~st~~~vL~e 228 (540)
T 4dfk_A 151 HMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGK--TEKTGKRSTSAAVLE 228 (540)
T ss_dssp HHHHHCBEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCCB--CTTTCCBCCCHHHHH
T ss_pred HHHhcCEEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCCCCCCC--CCCCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997653 2255699999999 9
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCcccccccccccccccc
Q 000107 1827 LLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNED 1906 (2191)
Q Consensus 1827 ~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~ 1906 (2191)
+|+..||++..|++||++.|+++||++++++.++ ..||||||+|+|++|+||||||++|||||||+ +++.
T Consensus 229 ~L~~~~p~~~~ile~R~l~Kl~sty~~~l~~~v~----~~~gRih~~~~q~~t~TGRlSs~~PNlQniP~------~~~~ 298 (540)
T 4dfk_A 229 ALREAHPIVEKILQYRELTKLKSTYIDPLPDLIH----PRTGRLHTRFNQTATATGRLSSSDPNLQNIPV------RTPL 298 (540)
T ss_dssp HTTTTCTHHHHHHHHHHHHHHHHHTTTTGGGGCC----TTTCSBCCEEESSCCSSSCCEEESSCCSCCCC------SSHH
T ss_pred HhhhcChHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCEEeeeeecCcccccCccccCCcceeeec------cCcc
Confidence 9999999999999999999999999998866542 35799999999999999999999999999994 5556
Q ss_pred ccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCChh
Q 000107 1907 IYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQ 1986 (2191)
Q Consensus 1907 g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~ 1986 (2191)
|+ .||+||+|+ +||+||+|||||||||||||||+|+.|+++|++ |.|||+.||+.|||+|+++||++
T Consensus 299 g~-----------~iR~~f~a~-~G~~lv~aDySqiElRvlAhls~D~~l~~af~~-g~Dih~~tA~~~fg~~~~~v~~~ 365 (540)
T 4dfk_A 299 GQ-----------RIRRAFIAE-EGWLLVALDYSQIELRVLAHLSGDENLIRVFQE-GRDIHTETASWMFGVPREAVDPL 365 (540)
T ss_dssp HH-----------HHHTTEECC-TTEEEEEEEETTHHHHHHHHHHCCHHHHHHHHT-TCCHHHHHHHHHHTCCGGGCCHH
T ss_pred hH-----------hhhheEeCC-CCCEEEEecHHHHHHHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHcCCChhhcCHH
Confidence 76 799999997 999999999999999999999999999999998 89999999999999999999999
Q ss_pred hhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCeeecCcccCCC
Q 000107 1987 ERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFGN 2066 (2191)
Q Consensus 1987 ~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~~ 2066 (2191)
+|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|+++++++|+++|||+|++|||||+|+|++.|
T Consensus 366 ~R~~aK~~~fg~~YG~~~~~La~~lgis~~eA~~~i~~~~~~~p~v~~~~~~~~~~a~~~Gyv~Tl~GRrr~~p~~~s~~ 445 (540)
T 4dfk_A 366 MRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 445 (540)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGCSS
T ss_pred HHhHHHHHHHhhhhCCchhHHHHHcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhCCcEECCCCCeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHHHH
Q 000107 2067 NKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAV 2146 (2191)
Q Consensus 2067 ~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v~ 2146 (2191)
...|+.+||+|+|+|||||||||+|.||++++++|.+. +++|+|||||||+||||++++++++
T Consensus 446 ~~~r~~aeR~a~N~~iQGsaAdi~K~ami~~~~~l~~~-----------------~~~l~lqVHDElv~ev~~~~~~~~~ 508 (540)
T 4dfk_A 446 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEM-----------------GARMLLQVHDELVLEAPKERAEAVA 508 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------TCEEEEECSSEEEEEEEGGGHHHHH
T ss_pred HHHHhhhhhhHhhhhhHhHHHHHHHHHHHHHHHHHHhc-----------------CCeEEEEEcceEEEEeCHHHHHHHH
Confidence 99999999999999999999999999999999998763 2799999999999999999999999
Q ss_pred HHHHHHHhcccCcccceEEEeeccCCccccCC
Q 000107 2147 SLVQKCMESAALLLVPLLVKIQVGSTWGSLEP 2178 (2191)
Q Consensus 2147 ~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~~ 2178 (2191)
++|+++||+|+.|.|||.|++++|+||+++|+
T Consensus 509 ~~v~~~Me~a~~l~VPl~v~~~~G~~W~e~~~ 540 (540)
T 4dfk_A 509 RLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE 540 (540)
T ss_dssp HHHHHHHHTSSCCSSCCCEEEEEESBHHHHHC
T ss_pred HHHHHHHhcccCCCCceEEeeeecCCHHHhCc
Confidence 99999999999999999999999999999986
No 4
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=4.4e-106 Score=1078.82 Aligned_cols=527 Identities=30% Similarity=0.448 Sum_probs=473.3
Q ss_pred CCeEEEEeeccCCcccCCCccceE-EEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHHHHHHH
Q 000107 1508 THEFYFDIHYDKHSEANSGVLFEI-HGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEMIKQRW 1586 (2191)
Q Consensus 1508 ~~~~afD~e~~~~~~~~s~~~~~i-~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1586 (2191)
...++||+++.+ .....+ +| ||+.++.++|+|+ ++
T Consensus 304 ~~~va~d~et~~------~~~~~l~vg--~a~~~g~a~yvp~-~~----------------------------------- 339 (832)
T 1bgx_T 304 GAFVGFVLSRKE------PMWADLLAL--AAARGGRVHRAPE-PY----------------------------------- 339 (832)
T ss_dssp TCCBEEECSSSC------TTTCCCCEE--ECBSSSEEECCSC-HH-----------------------------------
T ss_pred CceEEEEEecCC------cccCceeEE--EEEcCCCEEEEEC-CH-----------------------------------
Confidence 355889987642 112356 66 7788888999876 20
Q ss_pred HHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHHHhcCCCC
Q 000107 1587 KRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDD 1666 (2191)
Q Consensus 1587 ~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~ 1666 (2191)
+.|+++|+++.+ |+||++++|+++||.+. . .+|||||+|||+|+
T Consensus 340 ~~Lk~lLed~~i-----n~K~d~~~L~~~Gi~~~-~-----------------------------~~Dt~laayLl~p~- 383 (832)
T 1bgx_T 340 KALRDLKEARGL-----LAKDLSVLALREGLGLP-P-----------------------------GDDPMLLAYLLDPS- 383 (832)
T ss_dssp HHHHHCSSBCBT-----THHHHHHHHHHHTCCCC-B-----------------------------CCCHHHHHHHHCTT-
T ss_pred HHHHHHHhCCCC-----ChHHHHHHHHHcCCccC-c-----------------------------ccCHHHHHHHcCCC-
Confidence 247889999876 99999999999988765 3 48999999999997
Q ss_pred CCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHH
Q 000107 1667 ERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLV-SEELIEALLNIEIPLVNV 1745 (2191)
Q Consensus 1667 ~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~-~~~L~~l~~~iEmpl~~v 1745 (2191)
.|++++|...+ +. .|. + .|+ .|+.++++|+..|+++|. +.++.++|.++|||++.+
T Consensus 384 -~~~l~~l~~~~----gk----------~~~---~----~ya-~da~~~~~l~~~l~~~L~~~~~~~~l~~~iE~pl~~v 440 (832)
T 1bgx_T 384 -NTTPEGVARRY----GG----------EWT---E----EAG-ERAALSERLFANLWGRLEGEERLLWLYREVERPLSAV 440 (832)
T ss_dssp -CCSTTHHHHHH----SC----------CCC---S----SHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHTTHHHHHHH
T ss_pred -CCCHHHHHHHh----CC----------Cch---H----HHH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 77777765443 11 121 1 166 699999999999999999 889999999999999999
Q ss_pred HHHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHH
Q 000107 1746 LADMELWGIGVDMEGCLQARNLLQKKLRYLEKKAYTLAGMKFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCL 1825 (2191)
Q Consensus 1746 La~ME~~Gi~vD~~~l~~~~~~l~~~l~~le~~i~~l~G~~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL 1825 (2191)
|++||.+||+||.+.++++..++.+++++++++||+++|.+||++||+||+++||++||||+++.++ .+|.+||++++|
T Consensus 441 l~~mE~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lglp~~kkt~-ktG~~sT~~~vL 519 (832)
T 1bgx_T 441 LAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTE-KTGKRSTSAAVL 519 (832)
T ss_dssp HHHHHHHCBCBCTTTHHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCHHHHTTTTTTSCCCCCCCSSC-CSSSSGGGTSTT
T ss_pred HHHHHHcCeeecHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHhcCCCCccccc-ccCCccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998653220 234489999999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCceeeccccccccccccccccCCCCccccccccccccccc
Q 000107 1826 DLLRHEHPIVPVIKEHRTLAKLLNCTLGSICSLARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNE 1905 (2191)
Q Consensus 1826 ~~L~~~hpi~~~ile~R~l~Kllsty~~~l~~~~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~ 1905 (2191)
++|+..||++..|++||+++|+++||+++++++++ ..+|||||+|+|++|+||||||++||||||| ++++
T Consensus 520 ~~l~~~~p~~~~ile~R~l~Kl~sty~~~l~~~v~----~~~gRih~~~~q~~t~TGRlSs~~PNLQNiP------~~~~ 589 (832)
T 1bgx_T 520 EALREAHPIVEKILQYRELTKLKSTYIDPLPDLIH----PRTGRLHTRFNQTATATGRLSSSDPNLQNIP------VRTP 589 (832)
T ss_dssp TTGGGTCSTTHHHHTHHHHSCSBTTBCCCTTTSSC----TTTCSBCCEEESSCCSSSCCEEESSCTTSCC------CSST
T ss_pred HHhHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCCEEeeeeEecccceeeeecCCccccccc------cCch
Confidence 99988899999999999999999999998876543 3579999999999999999999999999999 4566
Q ss_pred cccCCCcccccccccccccccccCCCeEEEEeccchhHHHHHHHhcCChHHHHHhcCCCchHHHHHHHHHcCCCCCCCCh
Q 000107 1906 DIYGGNAEVDHCKINARDFFIPSQENWILLAADYSQIELRLMAHFSKDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGS 1985 (2191)
Q Consensus 1906 ~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsaDySQIELRilAhlS~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~ 1985 (2191)
.|+ .||+||+|+ +||+||+|||||||||||||||+|+.|+++|++ |.|||+.||+.|||+|+++||+
T Consensus 590 ~g~-----------~iR~~Fva~-~G~~lv~aDySqiElRilAhls~D~~l~~af~~-g~Dih~~tA~~~fg~~~e~vt~ 656 (832)
T 1bgx_T 590 LGQ-----------RIRRAFIAE-EGWLLVALDYSQIELRVLAHLSGDENLIRVFQE-GRDIHTETASWMFGVPREAVDP 656 (832)
T ss_dssp TTT-----------TTGGGBCCC-SSCCEEEEEESSHHHHHHHHTTTCTTHHHHHHH-TCCHHHHHHHHHHTCCTTSCCT
T ss_pred hhH-----------HhhheEeCC-CCCEEEEechhhhHHHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHhCCChhhcCH
Confidence 777 799999996 999999999999999999999999999999998 8999999999999999999999
Q ss_pred hhhcccchhhhhhhcCCChhhhhhhcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhcCeEEcccCCeeecCcccCC
Q 000107 1986 QERDQTKRLIYGILYGMGPNTLSEQLNCSSNEAKEKIKSFKSSFPGVASWLHVAVSSCHQKGYVESLKGRKRFLSKIKFG 2065 (2191)
Q Consensus 1986 ~~R~~AK~i~fGiiYGmG~~~La~~l~is~~eA~~~i~~f~~~yp~v~~~~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~ 2065 (2191)
++|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|++++++.|+++|||+|++|||||+|+|+++
T Consensus 657 ~~R~~aK~~nfgi~YG~~~~gLa~~lgis~~eA~~~i~~~~~~~p~v~~~~~~~~~~a~~~Gyv~Tl~GRrr~~p~i~s~ 736 (832)
T 1bgx_T 657 LMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEAR 736 (832)
T ss_dssp THHHHHHHHHHHTTSCCCHHHHHHHSSCCHHHHHHHHHHHHHHCHHHHHHHHHHTHHHHTTSSCCCSSCCCCCCGGGSCS
T ss_pred HHHHHHHHHHHhhhcCCchhHHHHHcCCCHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHCCeEEecCCCEEECCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHHH
Q 000107 2066 NNKEKSKAQRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEA 2145 (2191)
Q Consensus 2066 ~~~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v 2145 (2191)
|...|+.++|+|+|+|||||||||+|.||++++++|... +++|||||||||+||||+++++++
T Consensus 737 ~~~~r~~~eR~a~N~~iQGsAADiik~Ami~~~~~l~~~-----------------~~~lvlqVHDElv~evp~~~~~~~ 799 (832)
T 1bgx_T 737 VKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEM-----------------GARMLLQVHDELVLEAPKERAEAV 799 (832)
T ss_dssp SHHHHHHHHHHHTTHHHHTHHHHHHHTHHHHHHHHHHHH-----------------TCEEEEEETTEEEEEC----CHHH
T ss_pred CcchhhhhhhhhccHhhHHHHHHHHHHHHHHHHHHHHhC-----------------CCeEEEEeccEEEEEcCHHHHHHH
Confidence 999999999999999999999999999999999988641 579999999999999999999999
Q ss_pred HHHHHHHHhcccCcccceEEEeeccCCccccCC
Q 000107 2146 VSLVQKCMESAALLLVPLLVKIQVGSTWGSLEP 2178 (2191)
Q Consensus 2146 ~~~vk~~Me~a~~l~VPL~v~~~iG~sW~~~~~ 2178 (2191)
+++|+++|++|+.|.|||.|++++|+||+++||
T Consensus 800 ~~~v~~~M~~a~~l~VPl~v~~~~G~~W~e~~e 832 (832)
T 1bgx_T 800 ARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE 832 (832)
T ss_dssp HHHHHHHHHSSSCCSSCCCEECCEESSHHHHCC
T ss_pred HHHHHHHHhccCCCCCeEEEecccCCCHHHhcC
Confidence 999999999999999999999999999999986
No 5
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=100.00 E-value=2.5e-96 Score=979.82 Aligned_cols=504 Identities=20% Similarity=0.227 Sum_probs=435.8
Q ss_pred HHHHHHHHhhccCCccEEEech-HHHHHHHHhc-------Ccccc-cccCccccccccccccccccccccccCCCCccch
Q 000107 1584 QRWKRIGEIMEKRDVRKFTWNM-KVQIQVLKHA-------AVSIQ-RFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGID 1654 (2191)
Q Consensus 1584 ~~~~~L~~lLe~~~v~kv~hNl-K~dl~vL~~~-------gi~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 1654 (2191)
..++.|.++|+ +++.|++||+ |||+.+|.++ |+.+. + .++|
T Consensus 41 ~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~-----------------------------~~~D 90 (698)
T 1x9m_A 41 AYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRE-----------------------------NCID 90 (698)
T ss_dssp HHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCGG-----------------------------GEEE
T ss_pred HHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcccCCccCCCC-----------------------------cchh
Confidence 35678999999 8899999999 9999999876 66554 2 2699
Q ss_pred HHHHHHhcCCCCCCCCchhHHHHHHHhh-------ChHH-------HHH-------hhcc-C---chhhhhHHHHhhhHH
Q 000107 1655 MCIVSWILWPDDERSSNPNLEKEVKKRL-------SSEA-------AAA-------ANRS-G---RWKNQMRRAAHNGCC 1709 (2191)
Q Consensus 1655 t~lAawLL~P~~~~~~l~~L~~~~~~~l-------~~e~-------~~~-------~~~~-g---~~~~~~~~~~~~ya~ 1709 (2191)
||+|+|||+|+...++++.|.+. ++ +... ... .+.. . .|. .+.+.+.+||+
T Consensus 91 TmlaayLL~p~~~~~~L~~La~~---~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~-~~~~~~~~YA~ 166 (698)
T 1x9m_A 91 TLVLSRLIHSNLKDTDMGLLRSG---KLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWW-NFNEEMMDYNV 166 (698)
T ss_dssp HHHHHHHHTTTSCCCTTTTSCGG---GSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGT-SCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHH---HcccchhhhcccccccccCHHHHhCcccccccccccccCCcc-ccCHHHHHHHH
Confidence 99999999998778877776443 32 1111 011 1111 1 233 23355788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhhhhhHHHHHHHHHhcCcccCHHHHHHHHHHHHHHHHH
Q 000107 1710 RRVAQTRALCSVLWKLLVSEELI---------------EALLNIEIPLVNVLADMELWGIGVDMEGCLQARNLLQKKLRY 1774 (2191)
Q Consensus 1710 ~Da~~t~~L~~~L~~~L~~~~L~---------------~l~~~iEmpl~~vLa~ME~~Gi~vD~~~l~~~~~~l~~~l~~ 1774 (2191)
.||.+|++|+..|.++|.+.++. .+|.++|||++.+|++||.+||+||.+.+.++..++.+++++
T Consensus 167 ~Da~~t~~L~~~L~~~L~~~~~~l~~~~~~~~~~~~~~~l~~~~E~pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~~~~ 246 (698)
T 1x9m_A 167 QDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSE 246 (698)
T ss_dssp HHHHHHHHHHHHHHTCTTTSCTTSCTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHCEEBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCccccccccccchhhHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877664 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---------------------------------hC------------------------------------C
Q 000107 1775 LEKKAYTL---------------------------------AG------------------------------------M 1785 (2191)
Q Consensus 1775 le~~i~~l---------------------------------~G------------------------------------~ 1785 (2191)
++++++++ +| .
T Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (698)
T 1x9m_A 247 LLRKLTETFGSWYQPKGGTEMFCHPRTGKPLPKYPRIKTPKVGGIFKKPKNKAQREGREPCELDTREYVAGAPYTPVEHV 326 (698)
T ss_dssp HHHHHHHHSCCEEEECSCCBCCBCTTTCCBCTTSCCBBCCSSCCSBC-------------CCBCCCSBCTTCCBEEEEEE
T ss_pred HHHHHHHHhhhhccccccchhhccccccchhcccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 99999997 67 6
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcHHHHHHhhh----cCCcHHHHHHHHHHHHHHHhHH---HHHHHH
Q 000107 1786 KFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRH----EHPIVPVIKEHRTLAKLLNCTL---GSICSL 1858 (2191)
Q Consensus 1786 ~fnl~S~~ql~~vLf~~l~lp~~~~~~k~k~~~ST~~~vL~~L~~----~hpi~~~ile~R~l~Kllsty~---~~l~~~ 1858 (2191)
+||++||+||+++||+ +|||+++. +.+|.|||++++|++|+. .||++..|++||++.|+++||+ ++++..
T Consensus 327 ~fn~~S~~ql~~~L~~-lgl~~~~~--t~~G~~st~~~vL~~l~~~~~~~~p~~~~lle~r~l~kl~sty~~~~~~l~~~ 403 (698)
T 1x9m_A 327 VFNPSSRDHIQKKLQE-AGWVPTKY--TDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLRY 403 (698)
T ss_dssp CCCTTCHHHHHHHHHH-TTCCCCCB--CTTSCBCCSHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTSTTCHHHH
T ss_pred ccCCCCHHHHHHHHHH-CCCCCCCc--CCCCCcCCCHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Confidence 8999999999999999 99997543 334558999999999986 7999999999999999999999 777665
Q ss_pred hhhhcCCCceeeccccccccccccccccCCCCccccccccccccccccccCCCcccccccccccccccc--------cCC
Q 000107 1859 ARISMSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIP--------SQE 1930 (2191)
Q Consensus 1859 ~~~~~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~--------~~~ 1930 (2191)
+ +.||||||+|+|+||+||||||++|||||||+ .+++.|+ .||+||+| + +
T Consensus 404 v-----~~dgrih~~~~~~gt~TGRlSs~~PNlQniP~-----~~~~~g~-----------~iR~~F~a~~~~~~~~~-~ 461 (698)
T 1x9m_A 404 V-----AEDGKIHGSVNPNGAVTGRATHAFPNLAQIPG-----VRSPYGE-----------QCRAAFGAEHHLDGITG-K 461 (698)
T ss_dssp C-----CTTSEECCEEETTCSTTSCCEEESSCTTCCCC-----TTSTTHH-----------HHHHTBSGGGSBCTTTC-C
T ss_pred c-----CCCCeEeeeEEeccccccccccCCccceeecc-----cccccch-----------hhhheeecCcccccCCC-C
Confidence 4 35799999999999999999999999999995 2455666 89999999 6 8
Q ss_pred CeEEEEeccchhHHHHHHHhc---CChHHHHHhcCCCchHHHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCChhhh
Q 000107 1931 NWILLAADYSQIELRLMAHFS---KDPALIGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMGPNTL 2007 (2191)
Q Consensus 1931 G~~lvsaDySQIELRilAhlS---~D~~Li~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG~~~L 2007 (2191)
||+||+||||||||||||||| +|+.|+++|++ | |||+.||+ +||+|+ |+.||++|||++||||+++|
T Consensus 462 G~~lv~aDySqiElRilAhls~~~~D~~l~~af~~-g-DiH~~tA~-~~gv~~-------R~~aK~~nfg~~YG~g~~~L 531 (698)
T 1x9m_A 462 PWVQAGIDASGLELRCLAHFMARFDNGEYAHEILN-G-DIHTKNQI-AAELPT-------RDNAKTFIYGFLYGAGDEKI 531 (698)
T ss_dssp BCEEEEEEETTHHHHHHHHHHHHHHTTHHHHHHHH-S-CHHHHHHH-HSCCSS-------HHHHHHHHHHHHTTCCHHHH
T ss_pred CCEEEEEehhhhHHHHHHHHhhhcCcHHHHHHHhC-C-CHhHHHHH-HhCCch-------HhhhHHHHHccccCCCHHHH
Confidence 999999999999999999999 99999999998 7 99999999 999863 99999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHhChhHHHH--------------HHHHHHHHHhcCeEEcccCCeeecCcccCCChhhhhhh
Q 000107 2008 SEQLNCSSNEAKEKIKSFKSSFPGVASW--------------LHVAVSSCHQKGYVESLKGRKRFLSKIKFGNNKEKSKA 2073 (2191)
Q Consensus 2008 a~~l~is~~eA~~~i~~f~~~yp~v~~~--------------~~~~~~~a~~~GyV~Tl~GRrr~lp~i~s~~~~~r~~a 2073 (2191)
|+++|||.+||++++++||++||+|++| ++.+++.|+++|||+|++||||++. +
T Consensus 532 a~~lgis~~eA~~~i~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~a~~~gyv~tl~GRrr~~r----------~-- 599 (698)
T 1x9m_A 532 GQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVR----------S-- 599 (698)
T ss_dssp HTTTTCCHHHHHHHHHHHHHTCHHHHHHHHHHHHTTBC----------CCBSCSEEECTTSCEEECS----------C--
T ss_pred HHHcCCCHHHHHHHHHHHHHHCcCHHHHHHHhHhhhhhhhhHHHHHHHHHHhCCeEEccCCCeeecc----------c--
Confidence 9999999999999999999999999999 8888999999999999999999982 2
Q ss_pred hhhhhHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhh-HHHHHHHHHHH
Q 000107 2074 QRQAVNSICQGSAADIIKIAMINIHSIIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSV-IKEAVSLVQKC 2152 (2191)
Q Consensus 2074 eRqAvNt~iQGsAADI~K~Ami~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~-~~~v~~~vk~~ 2152 (2191)
+|+|+|+|||||||||+|.||+++++.|...+.. +.+..+++||+||||||+||||+++ +++++.+|+++
T Consensus 600 ~r~a~N~~iQGsaAdi~k~am~~i~~~l~~~~~~---------~~~~~~~~lvl~VHDElv~ev~~~~~~~~~~~~~~~~ 670 (698)
T 1x9m_A 600 PHAALNTLLQSAGALICKLWIIKTEEMLVEKGLK---------HGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEA 670 (698)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------BSTTSSEEEEEEETTEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCC---------cccCcceeEEEEeccEEEEEecchhHHHHHHHHHHHH
Confidence 8999999999999999999999999999764211 0123478999999999999999998 99999999999
Q ss_pred Hhccc---CcccceEEEeeccCCccccC
Q 000107 2153 MESAA---LLLVPLLVKIQVGSTWGSLE 2177 (2191)
Q Consensus 2153 Me~a~---~l~VPL~v~~~iG~sW~~~~ 2177 (2191)
|++|. .+.|||.|++++|+||+++|
T Consensus 671 M~~a~~~~~l~vPl~~~~~~G~~W~~~~ 698 (698)
T 1x9m_A 671 MRWVGDHWNFRCLLDTEGKMGPNWAICH 698 (698)
T ss_dssp HHHHHHHTTCSSCCCEEEEEESSTTTTC
T ss_pred HHhhhhccCCCeeEEEecccCcCHHhcC
Confidence 99997 79999999999999999987
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5e-79 Score=873.27 Aligned_cols=707 Identities=19% Similarity=0.245 Sum_probs=563.5
Q ss_pred hhccccCCCCCccceeccCCC-CcccccccCCCCCCccCCCCCCCCCCCcCCcCCC----CcHHHHHHHHHcCCCCCCHH
Q 000107 454 VHERKLDISSQGIDSITSDSP-TNVIKKPVGNEKSDEAGTPSSSGMLKDCLDLSSW----LPSEICSIYKKRGISKLYPW 528 (2191)
Q Consensus 454 ~~~~e~~~~~~y~i~v~Sd~w-~~e~~~pi~~~~~~e~~~P~~~~~~~e~l~L~~~----Lp~~l~~~l~~~Gi~~l~p~ 528 (2191)
++..+ +++++|+++++||+| +++...|++|++ +++|...+++++++|+++. |..+..+.+...+|..|+|+
T Consensus 855 ~p~~~-~~p~~~~i~~~sd~w~~~~~~~~~~~~~---~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpi 930 (1724)
T 4f92_B 855 VPVFE-PLPPQYFIRVVSDRWLSCETQLPVSFRH---LILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPI 930 (1724)
T ss_dssp EECCS-SCCSEEEEEEEESSSTTCEEEEEEECTT---CCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHH
T ss_pred EECCC-CCCCeEEEEEEEccccCCCceeeecccc---ccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHH
Confidence 34444 678999999999999 999999999998 9999999999999999874 55566666667789999999
Q ss_pred HHHhhhhccc-ccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhh-ccCCeEEEEe
Q 000107 529 QVECLHVDGV-LQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLE-PLGRHVRSYY 605 (2191)
Q Consensus 529 Q~eal~~~~i-l~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~-~lg~~V~~~~ 605 (2191)
|.+||+. + ..++|++|+||||||||++|+++|++.+.+ .++++|||+|+++||.|++++|.+.+. .+|++|..++
T Consensus 931 Q~q~~~~--l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~lt 1008 (1724)
T 4f92_B 931 QTQVFNT--VYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLT 1008 (1724)
T ss_dssp HHHHHHH--HHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECC
T ss_pred HHHHHHH--HhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEE
Confidence 9999986 5 467899999999999999999999999886 467899999999999999999987665 4899999998
Q ss_pred ccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCC
Q 000107 606 GNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSG 684 (2191)
Q Consensus 606 G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~ 684 (2191)
|+.... ....+++|+|||||+|+.+++++.....+++|++||+||+|+|++. ||..++.++.+++++..+
T Consensus 1009 Gd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~-------- 1079 (1724)
T 4f92_B 1009 GETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQ-------- 1079 (1724)
T ss_dssp SCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHHHHHHHHHHHHHHT--------
T ss_pred CCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccHHHHHHHHHHHHhh--------
Confidence 875421 1223579999999999999998777777899999999999999985 999999999999988653
Q ss_pred CCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccc-----cccccccccceEEEEeccccccchhhHHHHHHHhhc
Q 000107 685 ENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAAL-----YETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAAN 759 (2191)
Q Consensus 685 ~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l-----~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~ 759 (2191)
.+.++|+|+||||++|++++++||++.. |.+++||+|++.++........ .....
T Consensus 1080 -----------~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~-~~~~~-------- 1139 (1724)
T 4f92_B 1080 -----------IERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHT-QTRLL-------- 1139 (1724)
T ss_dssp -----------TSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSH-HHHHH--------
T ss_pred -----------cCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCc-hhhhh--------
Confidence 3467999999999999999999999763 7889999999998874332211 11100
Q ss_pred cCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhh
Q 000107 760 LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLE 839 (2191)
Q Consensus 760 ~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~ 839 (2191)
.....+...+. ....++++||||+||+.|+.+|..|...+............ ........+. ...|..|.
T Consensus 1140 ---~~~~~~~~~i~-~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~---~~~~l~~~l~---~~~d~~L~ 1209 (1724)
T 4f92_B 1140 ---SMAKPVYHAIT-KHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHC---TEKDLIPYLE---KLSDSTLK 1209 (1724)
T ss_dssp ---TTHHHHHHHHH-HHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCS---CHHHHHHHHT---TCCCHHHH
T ss_pred ---hhcchHHHHHH-HhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcc---cHHHHHHHHh---hcccHHHH
Confidence 01112222332 23467899999999999999999998876543221100000 1111222222 23488999
Q ss_pred hhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC------CCCcccCcccccccccc
Q 000107 840 ETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR------IGRDFIDGTRYRQMAGR 913 (2191)
Q Consensus 840 ~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~------~g~~~is~~~y~QmiGR 913 (2191)
+++.+||++|||||++++|..||+.|++|.++|||||+++++|||+|+++|||.... .+..+++..+|+||+||
T Consensus 1210 ~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GR 1289 (1724)
T 4f92_B 1210 ETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGH 1289 (1724)
T ss_dssp HHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTT
T ss_pred HHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999997542 12235789999999999
Q ss_pred cCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhcCCC---
Q 000107 914 AGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLLNST--- 990 (2191)
Q Consensus 914 AGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll~~~--- 990 (2191)
|||+|+|..|+|+++|++.+...+.+++.++. |++|+|.. .+...++..|+.|.+.+.+|+.+|+.+||++..
T Consensus 1290 AGR~g~d~~G~avll~~~~~~~~~~~ll~~~~-pveS~L~~---~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~ 1365 (1724)
T 4f92_B 1290 ANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPL-PVESHLDH---CMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQ 1365 (1724)
T ss_dssp BCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCB-CCCCCGGG---SCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHH
T ss_pred ccCCCCCCceEEEEEecchHHHHHHHHhCCCC-ceeeeccc---chHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhc
Confidence 99999999999999999999999999998876 79999965 455668889999999999999999999998531
Q ss_pred Cc--------c-----hhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhcccccc
Q 000107 991 KP--------F-----QDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVL 1057 (2191)
Q Consensus 991 ~~--------~-----~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl 1057 (2191)
.| . ....+.++.+|++|.+.+||+.+++. .+.+|++|++++..+|+|.+++.++..|+... .+
T Consensus 1366 nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~-~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~---~~ 1441 (1724)
T 4f92_B 1366 NPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEM-DVAPLNLGMIAAYYYINYTTIELFSMSLNAKT---KV 1441 (1724)
T ss_dssp SGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTT-EEEECHHHHHHHHTTCCHHHHHHHHHHCCTTC---CH
T ss_pred CcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCC-CEeecHHHHHHHHHCCCHHHHHHHHHhccccC---CH
Confidence 11 0 11235577899999999999876543 47899999999999999999999888886542 23
Q ss_pred cCccceeeeeccCC-CCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcCCCccccccccccccCccchhhhhh
Q 000107 1058 ASDLHLVYLSTPIN-VEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRL 1136 (2191)
Q Consensus 1058 ~~dlhllylvtp~~-~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1136 (2191)
.+-||+++..+.+. ..+..++..+ +.++....++....
T Consensus 1442 ~~~L~il~~a~ef~~i~~R~~E~~~------------------------l~~l~~~~~~~~~~----------------- 1480 (1724)
T 4f92_B 1442 RGLIEIISNAAEYENIPIRHHEDNL------------------------LRQLAQKVPHKLNN----------------- 1480 (1724)
T ss_dssp HHHHHHHHTSGGGTTCCCCTTHHHH------------------------HHHHHHHSSSCCSS-----------------
T ss_pred HHHHHHhcCCcccccccccccHHHH------------------------HHHHHhhCCCCCCc-----------------
Confidence 44566555544432 1223333222 22222222322110
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHH
Q 000107 1137 GITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIA 1216 (2191)
Q Consensus 1137 ~~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~ 1216 (2191)
.... . ..++++++|++|++++++. ..| +||+++++++|.|+++++..||..+||...+..+.
T Consensus 1481 ----~~~~------~--~~~K~~lLlqa~~~r~~l~---~~~---~~D~~~i~~~~~rl~~a~~d~~~~~g~~~~~~~~~ 1542 (1724)
T 4f92_B 1481 ----PKFN------D--PHVKTNLLLQAHLSRMQLS---AEL---QSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAM 1542 (1724)
T ss_dssp ----CCTT------C--HHHHHHHHHHHHHTTCCCC---HHH---HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred ----cccC------C--HHHHHHHHHHHHHCCCcCC---hHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0000 0 2356899999999999875 244 69999999999999999999999999999889999
Q ss_pred HHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhh
Q 000107 1217 KFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFE 1272 (2191)
Q Consensus 1217 ~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~ 1272 (2191)
.|.+||.+|+++|+++|++||+|++.|||+||++||+|+.||++++++++..+|..
T Consensus 1543 ~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~ 1598 (1724)
T 4f92_B 1543 ELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQL 1598 (1724)
T ss_dssp HHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCC
T ss_pred HHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999998743
No 7
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.7e-78 Score=816.51 Aligned_cols=680 Identities=25% Similarity=0.375 Sum_probs=533.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
||+.+.+.+++.||.+|+|+|.++++. .+.+++|++++||||||||++|++++++.+...+++++|++|+++||.|+++
T Consensus 15 l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~ 93 (715)
T 2va8_A 15 LPSNVIEIIKKRGIKKLNPPQTEAVKK-GLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYL 93 (715)
T ss_dssp SCHHHHHHHHTTSCCBCCHHHHHHHHT-TTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHH
Confidence 789999999999999999999999974 4678999999999999999999999999888778999999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCCCC-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHH
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLL 667 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL 667 (2191)
+++ .+..+|++|..++|+..... ...+++|+|||||++..++++ ...+++++++|||||+|++++..||..++.++
T Consensus 94 ~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~ 170 (715)
T 2va8_A 94 TFK-DWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH--RPEWLNEVNYFVLDELHYLNDPERGPVVESVT 170 (715)
T ss_dssp HHG-GGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHH--CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHH
T ss_pred HHH-HhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhC--ChhHhhccCEEEEechhhcCCcccchHHHHHH
Confidence 995 45667999999888764321 123689999999999998876 44458999999999999999888999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEecc------
Q 000107 668 TKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGN------ 741 (2191)
Q Consensus 668 ~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~------ 741 (2191)
.+++ ++|+|+||||++|.+++++|+++..+...+||+|+..++....
T Consensus 171 ~~~~---------------------------~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 171 IRAK---------------------------RRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEY 223 (715)
T ss_dssp HHHH---------------------------TSEEEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEE
T ss_pred Hhcc---------------------------cCcEEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccce
Confidence 8883 4799999999999999999999999999999999987765332
Q ss_pred ccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhH
Q 000107 742 AIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDIT 821 (2191)
Q Consensus 742 ~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~ 821 (2191)
.+...... .... ...+.+..++.+.+..++++||||++++.|+.++..|.+.+..... ...+...+.
T Consensus 224 ~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~----~~~~~~~~~ 290 (715)
T 2va8_A 224 NVIFKDNT-------TKKV--HGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSL----DENALSEIL 290 (715)
T ss_dssp EEEETTSC-------EEEE--ESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCC----CHHHHHHHH
T ss_pred eeecCcch-------hhhc--ccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccC----ChHHHHHHH
Confidence 11000000 0000 0023455666666778899999999999999999999875432100 001112222
Q ss_pred HHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeec----C--
Q 000107 822 SAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ----P-- 895 (2191)
Q Consensus 822 ~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~----p-- 895 (2191)
...+.+.......+..|.+++..||++|||+|+.++|..|++.|++|.++|||||+++++|||+|+++|||+. +
T Consensus 291 ~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~ 370 (715)
T 2va8_A 291 KQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKK 370 (715)
T ss_dssp HHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC------
T ss_pred HHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeecccc
Confidence 2333332112223567888999999999999999999999999999999999999999999999999999983 2
Q ss_pred -CCCCcccCcccccccccccCCCCCCCceEEEEEeChhh-HH-HHHhhhccCCCCcccccccccchhhHHHHHHHhcccc
Q 000107 896 -RIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE-VK-KIMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIV 972 (2191)
Q Consensus 896 -~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e-~~-~~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~ 972 (2191)
..+..+++..+|.||+|||||.|.|..|.||+++++.+ .. .+.+++...+++++|.|... ..+...+|.+++.|.+
T Consensus 371 ~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~-~~l~~~~l~~~~~g~~ 449 (715)
T 2va8_A 371 IAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSE-RAFYTFLLGILSAEGN 449 (715)
T ss_dssp --------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSH-HHHHHHHHHHHHHHCS
T ss_pred CCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCch-hHHHHHHHHHHhcccc
Confidence 11225788999999999999999999999999998765 33 45568888888999998642 2466678899999988
Q ss_pred cCHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhc
Q 000107 973 QTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAR 1052 (2191)
Q Consensus 973 ~t~~di~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~ 1052 (2191)
.+.+|+.+|+.+||++.+.+ ...+..++++|.+.|+|+.++ +.+.+|++|+.++.+|++|..+++++..++...
T Consensus 450 ~~~~~~~~~l~~~~~~~~~~----~~~~~~al~~L~~~g~i~~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~ 523 (715)
T 2va8_A 450 LSEKQLENFAYESLLAKQLV----DVYFDRAIRWLLEHSFIKEEG--NTFALTNFGKRVADLYINPFTADIIRKGLEGHK 523 (715)
T ss_dssp EEHHHHHHHHTTSSSCHHHH----HHHHHHHHHHHHHTTSEEECS--SEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhhHHHhhcc----hHHHHHHHHHHHHCcCEeecC--CeEeeChHHHHHHHHcCCHhHHHHHHHHhhhcc
Confidence 89999999999999875433 234788999999999997542 347899999999999999999999999998753
Q ss_pred ccccccCccceeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcC-CCccccccccccccCccch
Q 000107 1053 EGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHG-APMRISSKLRDSTKGLHGK 1131 (2191)
Q Consensus 1053 ~~~vl~~dlhllylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 1131 (2191)
. .++.++|++++....- ++ .+.+..+.+ .+.+.+.. .......
T Consensus 524 ~----~~~~~~l~~i~~~~e~--~~---~~~r~~e~~---------------~l~~~~~~~~~~~~~~------------ 567 (715)
T 2va8_A 524 A----SCELAYLHLLAFTPDG--PL---VSVGRNEEE---------------ELIELLEDLDCELLIE------------ 567 (715)
T ss_dssp C----CCHHHHHHHHHHSTTS--CC---CCCCHHHHH---------------HHHHHHTTCSSCCSSC------------
T ss_pred C----CCHHHHHHHhhcCccc--cc---CccChHHHH---------------HHHHHHHhcchhhccc------------
Confidence 2 3567888877654211 11 000111111 11111110 0000000
Q ss_pred hhhhhccccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhH
Q 000107 1132 LEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDL 1211 (2191)
Q Consensus 1132 ~~~~~~~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~ 1211 (2191)
. ..........+.+||++++|++|++|+++++|+++|++++|++|+++++|.|+++++.+||+.+||..+
T Consensus 568 ---------~-~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~ 637 (715)
T 2va8_A 568 ---------E-PYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEH 637 (715)
T ss_dssp ---------C-CSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------c-cccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 0 000001223447899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHH
Q 000107 1212 EGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKK 1291 (2191)
Q Consensus 1212 ~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~ 1291 (2191)
+..+..|++||.|||++|++||++||||++.|||+||++||+|++||+ +++++|.++|. .++|++
T Consensus 638 ~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l~--------------~~~~~~ 702 (715)
T 2va8_A 638 ADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNLLG--------------QKLGEK 702 (715)
T ss_dssp HHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHHC--------------HHHHHH
T ss_pred HHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHhC--------------hhHHHH
Confidence 999999999999999999999999999999999999999999999999 99999999962 467888
Q ss_pred HHHHHHHHH
Q 000107 1292 IKNGARKIV 1300 (2191)
Q Consensus 1292 I~~~A~~l~ 1300 (2191)
|+++|++.+
T Consensus 703 i~~~~~~~~ 711 (715)
T 2va8_A 703 VVQEAARLL 711 (715)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 888776643
No 8
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7.9e-78 Score=814.43 Aligned_cols=666 Identities=26% Similarity=0.413 Sum_probs=527.9
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
||+.+.+.++++||.+|+|+|.++++. .+.+++|++++||||||||++|++++++.+...+++++|++|+++||.|+++
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~ 86 (720)
T 2zj8_A 8 VDERIKSTLKERGIESFYPPQAEALKS-GILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQ 86 (720)
T ss_dssp SCHHHHHHHHHTTCCBCCHHHHHHHTT-TGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH
Confidence 789999999999999999999999974 4778999999999999999999999999888778999999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCCCC-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHH
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLL 667 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL 667 (2191)
+++. +..+|++|..++|+..... ...+++|+|||||+++.++++ ...+++++++|||||+|++++..||..++.++
T Consensus 87 ~~~~-l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll 163 (720)
T 2zj8_A 87 EFQD-WEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSRDRGATLEVIL 163 (720)
T ss_dssp HTGG-GGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHHH-HHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHc--ChhhhhcCCEEEEECCcccCCCcccHHHHHHH
Confidence 9954 4567999999999764322 223689999999999998886 45568999999999999999988999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccch
Q 000107 668 TKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKK 747 (2191)
Q Consensus 668 ~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~ 747 (2191)
.+++ .++|+|+||||++|++++++|+++..+...+||+|+..++.....+....
T Consensus 164 ~~l~--------------------------~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~ 217 (720)
T 2zj8_A 164 AHML--------------------------GKAQIIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWED 217 (720)
T ss_dssp HHHB--------------------------TTBEEEEEECCCSCHHHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETT
T ss_pred HHhh--------------------------cCCeEEEEcCCcCCHHHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccc
Confidence 9983 25899999999999999999999999999999999988765443322111
Q ss_pred hhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHh
Q 000107 748 MDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDAL 827 (2191)
Q Consensus 748 ~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L 827 (2191)
... . ..+.+..++.+.+..++++||||+|++.|+.++..|.+.+..... ..+...+....+.+
T Consensus 218 ~~~--------~----~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~-----~~~~~~~~~~~~~i 280 (720)
T 2zj8_A 218 GSI--------D----RFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLT-----KPEIRALNELADSL 280 (720)
T ss_dssp SCE--------E----ECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSC-----HHHHHHHHHHHHTS
T ss_pred cch--------h----hhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcC-----hhhHHHHHHHHHHH
Confidence 000 0 011223455555667899999999999999999999876543110 01111112222222
Q ss_pred hcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEee----cCCCCCcccC
Q 000107 828 RRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR----QPRIGRDFID 903 (2191)
Q Consensus 828 ~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~----~p~~g~~~is 903 (2191)
. ....+..|.+++.+||++|||+|+.++|..|++.|++|.++|||||+++++|||+|+++|||+ ++..|..+++
T Consensus 281 ~--~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s 358 (720)
T 2zj8_A 281 E--ENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIP 358 (720)
T ss_dssp C--SCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECC
T ss_pred h--cccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCC
Confidence 1 111244588889999999999999999999999999999999999999999999999999998 3323445789
Q ss_pred cccccccccccCCCCCCCceEEEEEeChhhHHH-HHhhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHHHHHH
Q 000107 904 GTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK-IMGLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYV 982 (2191)
Q Consensus 904 ~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~-~~~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l 982 (2191)
..+|.||+|||||.|.|..|.||+++++.+... +.+++...+++++|++... ..+...++..++.|.+.+.+|+.+|+
T Consensus 359 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~-~~l~~~ll~~i~~~~~~~~~d~~~~l 437 (720)
T 2zj8_A 359 IIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNE-SNLRSQVLALIATFGYSTVEEILKFI 437 (720)
T ss_dssp HHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCH-HHHHHHHHHHHHHSCCCSHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCch-hhHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999999877554 4468888889999998542 24666788888999899999999999
Q ss_pred HhhhcCCCCcc-hhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhcccccccCcc
Q 000107 983 RCTLLNSTKPF-QDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDL 1061 (2191)
Q Consensus 983 ~~tll~~~~~~-~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~~dl 1061 (2191)
.+||++.+.+. ....+.+..++++|.+.|+|.... +..+.+|++|+.++.++|+|..++++++.++...+. .++.
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 513 (720)
T 2zj8_A 438 SNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISL-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKD---PNPI 513 (720)
T ss_dssp HTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECT-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHS---CCHH
T ss_pred HhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECC-CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccC---CCHH
Confidence 99998765442 234467889999999999997432 335789999999999999999999999999875221 3567
Q ss_pred ceeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHh-cC---CCccccccccccccCccchhhhhhc
Q 000107 1062 HLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMA-HG---APMRISSKLRDSTKGLHGKLEYRLG 1137 (2191)
Q Consensus 1062 hllylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 1137 (2191)
++|++++....- ++ ++.+..+...+. .++.... .. .|+.
T Consensus 514 ~~l~i~~~~~e~--~~---i~~r~~e~~~l~-----------~~~~~~~~~~~~~~p~~--------------------- 556 (720)
T 2zj8_A 514 GIFHLISLTPDI--TP---FNYSKREFERLE-----------EEYYEFKDRLYFDDPYI--------------------- 556 (720)
T ss_dssp HHHHHHHTSTTC--CC---CCCCHHHHHHHH-----------HHHHHHGGGCSSCCTTS---------------------
T ss_pred HHHHHhccCccc--cc---cccCHHHHHHHH-----------HHHHhcccccccccccc---------------------
Confidence 888888765321 00 000001111110 0011100 00 0100
Q ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Q 000107 1138 ITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAK 1217 (2191)
Q Consensus 1138 ~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~ 1217 (2191)
. ... +......+.|||++++|++||+|+|+.+|+++|++.+|++|+++++|.|+++++..||..+||..+...+..
T Consensus 557 --~-~~~-~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~ 632 (720)
T 2zj8_A 557 --S-GYD-PYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLET 632 (720)
T ss_dssp --S-CCC-HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred --c-ccc-chhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 0 000 000223457899999999999999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHH
Q 000107 1218 FQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKA 1269 (2191)
Q Consensus 1218 ~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~ 1269 (2191)
|++||.|||++|++||++||||++.|||+||++||+|+.||+++++++++.+
T Consensus 633 l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~ 684 (720)
T 2zj8_A 633 LRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKI 684 (720)
T ss_dssp HHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTS
T ss_pred HHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999876
No 9
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6.7e-76 Score=793.45 Aligned_cols=668 Identities=29% Similarity=0.432 Sum_probs=527.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHH
Q 000107 505 LSSWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584 (2191)
Q Consensus 505 L~~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~ 584 (2191)
+..|||+.+.+.+++.||.+|+|+|.++++. +.+++|++++||||||||++|++++++.+. .++++||++|+++||.
T Consensus 6 l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~--i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~ 82 (702)
T 2p6r_A 6 LAESISSYAVGILKEEGIEELFPPQAEAVEK--VFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAG 82 (702)
T ss_dssp HHHHHHHHHHHHHHCC---CCCCCCHHHHHH--HTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHH
T ss_pred hhhccCHHHHHHHHhCCCCCCCHHHHHHHHH--HhCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHHHHH
Confidence 3446889999999999999999999999987 889999999999999999999999998876 4789999999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEeccCCCCC-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 585 q~~~~l~~l~~~lg~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
|++++++ .+..+|++|..++|+..... ...+++|+|||||++..++++ ...+++++++|||||+|++++++||..+
T Consensus 83 q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~ 159 (702)
T 2p6r_A 83 EKYESFK-KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATL 159 (702)
T ss_dssp HHHHHHT-TTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCTTTHHHH
T ss_pred HHHHHHH-HHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHc--ChhHHhhcCEEEEeeeeecCCCCcccHH
Confidence 9999995 45667999999999764322 234789999999999998876 4456899999999999999998999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEecccc
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAI 743 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~ 743 (2191)
+.++.++++. .+++|+|+||||++|.+++++|+++..+...+||+|+..++......
T Consensus 160 ~~ll~~l~~~-----------------------~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~ 216 (702)
T 2p6r_A 160 EILVTKMRRM-----------------------NKALRVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTL 216 (702)
T ss_dssp HHHHHHHHHH-----------------------CTTCEEEEEECCCTTHHHHHHHTTCEEEECCCCSSCEEEEEECSSEE
T ss_pred HHHHHHHHhc-----------------------CcCceEEEECCCcCCHHHHHHHhCCCcccCCCCCccceEEEeeCCee
Confidence 9999999865 25689999999999999999999999999999999998876543322
Q ss_pred ccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHH
Q 000107 744 YSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSA 823 (2191)
Q Consensus 744 ~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~ 823 (2191)
....... ... .......++.+.+..++++||||++++.|+.++..|.+.+...... .+ .
T Consensus 217 ~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~-----~~------~ 275 (702)
T 2p6r_A 217 ELFDGAF-------STS---RRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVEN-----EG------L 275 (702)
T ss_dssp EEEETTE-------EEE---EECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCC-----SS------H
T ss_pred eccCcch-------hhh---hhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcCh-----HH------H
Confidence 1111000 000 0001344555566678999999999999999999998765431100 00 1
Q ss_pred HHHh-hcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC-C-C-C
Q 000107 824 IDAL-RRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR-I-G-R 899 (2191)
Q Consensus 824 ~~~L-~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~-~-g-~ 899 (2191)
.+.+ .......+..|.+++++||++|||+|+.++|..+++.|++|.++|||||+++++|||+|+++|||+... . + .
T Consensus 276 ~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~ 355 (702)
T 2p6r_A 276 EKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS 355 (702)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE
T ss_pred HHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCC
Confidence 1111 112222356788888899999999999999999999999999999999999999999999999998311 0 1 3
Q ss_pred cccCcccccccccccCCCCCCCceEEEEEeChhhHHHHH-hhhccCCCCcccccccccchhhHHHHHHHhcccccCHHHH
Q 000107 900 DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM-GLLNESCPPLHSCLSEDKNGMTHAILEVVAGGIVQTAEDI 978 (2191)
Q Consensus 900 ~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~-~ll~~~l~~l~S~L~~~~~~l~~~iLeiia~gi~~t~~di 978 (2191)
.+++..+|.||+|||||.|.|..|.||+++++.+...+. +++...+++++|.|... ..+...++..++.|.+.+.+|+
T Consensus 356 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~-~~l~~~~l~~~~~g~~~~~~~~ 434 (702)
T 2p6r_A 356 KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVE-THLRFHSLSIICDGYAKTLEEL 434 (702)
T ss_dssp EECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSH-HHHHHHHHHHHHHTSCSSHHHH
T ss_pred CcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcc-hhHHHHHHHHHHcCCCCCHHHH
Confidence 567899999999999999999999999999998765543 57888888999998642 2466678889999989999999
Q ss_pred HHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHhhhccccccc
Q 000107 979 HRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLA 1058 (2191)
Q Consensus 979 ~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~ 1058 (2191)
.+|+.+||++.+.. ....+.+..++++|.+.|+|+.+ ..+.+|++|+.++.+|++|..+++++..++... .
T Consensus 435 ~~~l~~t~~~~~~~-~~~~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~-----~ 505 (702)
T 2p6r_A 435 EDFFADTFFFKQNE-ISLSYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRME-----L 505 (702)
T ss_dssp HHHHHTSTTHHHHC-CCCHHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCC-----C
T ss_pred HHHHHhhhHHHhhh-HHHHHHHHHHHHHHHHCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhccc-----C
Confidence 99999999864311 01235678899999999999754 346899999999999999999999999887653 3
Q ss_pred CccceeeeeccCCC----CCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcCCCccccccccccccCccchhhh
Q 000107 1059 SDLHLVYLSTPINV----EVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEY 1134 (2191)
Q Consensus 1059 ~dlhllylvtp~~~----~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (2191)
+++++|++++.... .+.++-..+.. ++.+. +.++ . .++ .+.
T Consensus 506 ~~~~~l~~i~~~~e~~~i~~r~~e~~~~~---------------------~~~~~--~~~~-~---------~~~-~~~- 550 (702)
T 2p6r_A 506 SDIGALHLICRTPDMERLTVRKTDSWVEE---------------------EAFRL--RKEL-S---------YYP-SDF- 550 (702)
T ss_dssp CHHHHHHHHHHSTTSCCCCCCTTTHHHHH---------------------HHHHH--GGGS-S---------CCC-CTT-
T ss_pred CHHHHHHHhhCCcccccCCCCCchHHHHH---------------------HHHhc--cccc-c---------CCc-chh-
Confidence 56688888765421 11111011110 01110 0000 0 000 000
Q ss_pred hhccccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHH
Q 000107 1135 RLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGL 1214 (2191)
Q Consensus 1135 ~~~~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~l 1214 (2191)
+......+.+||++++|++|++|+++.+|+++|++.+|++|+++++|.|+++++..||..+||. .
T Consensus 551 -----------~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~~----~ 615 (702)
T 2p6r_A 551 -----------SVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNT----S 615 (702)
T ss_dssp -----------STTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC----S
T ss_pred -----------hhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcCHH----H
Confidence 0011234578999999999999999999999999999999999999999999999999999996 7
Q ss_pred HHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1215 IAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1215 l~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
+..|.+||.|||++|++||++||||++.|||+||++||+|+.||++++ ++|.++|. .+++++|++
T Consensus 616 l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll~--------------~~~~~~i~~ 680 (702)
T 2p6r_A 616 VSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVASLIG--------------RGIAERVVE 680 (702)
T ss_dssp STTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHHC--------------HHHHHHHHH
T ss_pred HHHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHhC--------------hhHHHHHHH
Confidence 789999999999999999999999999999999999999999999999 99998862 467888999
Q ss_pred HHH
Q 000107 1295 GAR 1297 (2191)
Q Consensus 1295 ~A~ 1297 (2191)
.|+
T Consensus 681 ~~~ 683 (702)
T 2p6r_A 681 GIS 683 (702)
T ss_dssp HHH
T ss_pred hcC
Confidence 888
No 10
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.5e-70 Score=780.03 Aligned_cols=655 Identities=23% Similarity=0.307 Sum_probs=505.9
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh----------cCCEEEEEch
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS----------TGKMALLVLP 578 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~----------~g~kaL~I~P 578 (2191)
||+.....| .||++|+++|.+|++. ++.+++|+||+||||||||++|+++|++.+.+ ++.++|||+|
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~-al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP 142 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRA-ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 142 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHH-HHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHH-HHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECC
Confidence 665544444 3899999999999985 35679999999999999999999999999874 3679999999
Q ss_pred hHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCC-CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 579 YVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS-LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 579 ~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~-l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
++|||.|+++.|++.+..+|++|..++|+..... ...+++|+|||||+|+.+++++....+++++++|||||+|+++|
T Consensus 143 ~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d- 221 (1724)
T 4f92_B 143 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD- 221 (1724)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-
Confidence 9999999999999999999999999999875422 23468999999999999988765555789999999999999998
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc------ccccccccc
Q 000107 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA------LYETNFRPV 731 (2191)
Q Consensus 658 ~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~------l~~~~~Rpv 731 (2191)
.||+.+|.+++++++.... .+.++|+|+||||++|++++++||++. .|...+|||
T Consensus 222 ~RG~~lE~~l~rl~~~~~~-------------------~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPv 282 (1724)
T 4f92_B 222 DRGPVLEALVARAIRNIEM-------------------TQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPV 282 (1724)
T ss_dssp TTHHHHHHHHHHHHHHHHH-------------------HTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSS
T ss_pred ccHHHHHHHHHHHHHHHHh-------------------CCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccC
Confidence 5999999999998765321 236789999999999999999999874 678999999
Q ss_pred cceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH---hcCCcEEEEeCchhHHHHHHHHHHHHHhhccc
Q 000107 732 PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV---QEGHSVLIFCSSRKGCESTARHVSKFLKKFSI 808 (2191)
Q Consensus 732 pL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~---~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~ 808 (2191)
||++++...... .. .... ..+...+.+.+ ..++++||||+||+.|+.+|..|.+.+.....
T Consensus 283 pL~~~~~~~~~~--~~---~~~~-----------~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~ 346 (1724)
T 4f92_B 283 PLEQTYVGITEK--KA---IKRF-----------QIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDT 346 (1724)
T ss_dssp CEEEECCEECCC--CH---HHHH-----------HHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTS
T ss_pred ccEEEEeccCCc--ch---hhhh-----------HHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 998765321110 00 0000 01112222222 23579999999999999999999887644321
Q ss_pred ccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCc
Q 000107 809 NVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPAR 888 (2191)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav 888 (2191)
........ ....+.+. .......+..|.+++.+||++|||||+.++|..||+.|++|.++|||||+||++|||+|++
T Consensus 347 ~~~~~~~~-~~~~~~~~--~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~ 423 (1724)
T 4f92_B 347 LGLFLREG-SASTEVLR--TEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAH 423 (1724)
T ss_dssp TTCCSSCC-TTCSSHHH--HTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBS
T ss_pred hhhhcccc-hhHHHHHH--hhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCc
Confidence 11000000 00001111 1122345788999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCC------CCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHH
Q 000107 889 RVIFRQPRI------GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHA 962 (2191)
Q Consensus 889 ~VVI~~p~~------g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~ 962 (2191)
+|||..... +..+++..+|+||+|||||+|+|..|++|+++++++...+..++.++. |++|+|.. .+...
T Consensus 424 ~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~-pieS~l~~---~l~d~ 499 (1724)
T 4f92_B 424 TVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQL-PIESQMVS---KLPDM 499 (1724)
T ss_dssp EEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCS-CCCCCTTT---THHHH
T ss_pred eEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCC-cchhhccc---cHHHH
Confidence 999974321 234689999999999999999999999999999998888888998876 69999875 34566
Q ss_pred HHHHHhcccccCHHHHHHHHHhhhcCCC---------Ccc----------hhHHHHHHHHHHHHHHcccceeccCCCccC
Q 000107 963 ILEVVAGGIVQTAEDIHRYVRCTLLNST---------KPF----------QDVVKSAQDSLRWLCHRKFLEWNEDTKLYS 1023 (2191)
Q Consensus 963 iLeiia~gi~~t~~di~~~l~~tll~~~---------~~~----------~~~~~~~~~al~~L~~~~~i~~~~~~~~~~ 1023 (2191)
++..|+.|.+.+.+++.+|+.+||++.. ... ....+.+..++++|.+.+||+.+++++.+.
T Consensus 500 L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~ 579 (1724)
T 4f92_B 500 LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQ 579 (1724)
T ss_dssp HHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEE
T ss_pred HHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccc
Confidence 7778888999999999999999987521 000 012244678999999999999888777899
Q ss_pred CCHHHHHHHhcCCChhhHHHHHHHHhhhcccccccCccceeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCH
Q 000107 1024 TTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQVGVSE 1103 (2191)
Q Consensus 1024 ~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~~dlhllylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e 1103 (2191)
+|++|++++..||++.++..+...++.. .++.++|++++-. .++..+..+-++.
T Consensus 580 ~T~lGr~~s~~yi~~~t~~~~~~~l~~~------~~~~~ll~~is~s-----~ef~~i~~R~~E~--------------- 633 (1724)
T 4f92_B 580 VTELGRIASHYYITNDTVQTYNQLLKPT------LSEIELFRVFSLS-----SEFKNITVREEEK--------------- 633 (1724)
T ss_dssp ECHHHHHHHHTTCCHHHHHHHHHHCCTT------CCHHHHHHHHHTC-----GGGTTCCCCGGGH---------------
T ss_pred cchHHHHHHHhcCCHHHHHHHHhhcCCC------CCHHHHHHHHhCC-----hhhccCCcCHHHH---------------
Confidence 9999999999999999988877766432 2455555555432 2211111111111
Q ss_pred HHHHHHhcCCCccccccccccccCccchhhhhhccccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcc
Q 000107 1104 PYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARG 1183 (2191)
Q Consensus 1104 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG 1183 (2191)
..+.++....++...+ .. ++ . ..++.++|++||++.++...+- .+
T Consensus 634 ~~l~~l~~~~~~~~~~----------------------~~--~~---~---~~Kv~~Llq~~i~~~~~~~~~l-----~~ 678 (1724)
T 4f92_B 634 LELQKLLERVPIPVKE----------------------SI--EE---P---SAKINVLLQAFISQLKLEGFAL-----MA 678 (1724)
T ss_dssp HHHHHHHHHSSSCCCS----------------------CC--SS---H---HHHHHHHHHHHHTTCCCCCHHH-----HH
T ss_pred HHHHHHHhcCCCCcCC----------------------CC--CC---h---HHHHHHHHHHHHcCCCcccccH-----HH
Confidence 1122222222221100 00 00 1 1238899999999999877665 38
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCH
Q 000107 1184 MVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASI 1263 (2191)
Q Consensus 1184 ~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~ 1263 (2191)
|...+.++|.|++.++..+|...||..+...+-.+.+++.+|++++..||.++|+|++.++|+|+++|+ |+++|..+++
T Consensus 679 D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~-~~~~l~~~~~ 757 (1724)
T 4f92_B 679 DMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNF-PFERLYDLNH 757 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTSCTTSCGGGGSTTSCHHHHHHHHTSSC-CGGGGGGCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCCceecCCCCCHHHHHHHHhcCC-CHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHh
Q 000107 1264 SEIVKALF 1271 (2191)
Q Consensus 1264 ~~l~~~l~ 1271 (2191)
.+|..++.
T Consensus 758 ~~l~~~~~ 765 (1724)
T 4f92_B 758 NEIGELIR 765 (1724)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 99999984
No 11
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-42 Score=476.38 Aligned_cols=402 Identities=26% Similarity=0.426 Sum_probs=298.2
Q ss_pred HcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 519 KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 519 ~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
..+|. |+|+|.++++. +..|++++++||||+|||++|+++++..+ ..++++||++|+++|+.|++++|..++.
T Consensus 82 ~~~f~-L~~~Q~eai~~--l~~g~~vLV~apTGSGKTlva~lai~~~l-~~g~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISC--IDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCSSC-CCHHHHHHHHH--HHHTCEEEEECCTTSCHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred hCCCC-CCHHHHHHHHH--HHcCCCEEEECCCCCChHHHHHHHHHHHh-ccCCeEEEECChHHHHHHHHHHHHHHhC---
Confidence 35674 99999999987 88999999999999999999999988766 4688999999999999999999998775
Q ss_pred CeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCC
Q 000107 599 RHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGT 678 (2191)
Q Consensus 599 ~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~ 678 (2191)
.|+.++|+.. ...+.+|+|+|||++..++.+ ....+.++++|||||+|++.+.+||..++.++..+
T Consensus 155 -~vglltGd~~---~~~~~~IvV~Tpe~L~~~L~~--~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l-------- 220 (1010)
T 2xgj_A 155 -DVGLMTGDIT---INPDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL-------- 220 (1010)
T ss_dssp -CEEEECSSCE---ECTTCSEEEEEHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS--------
T ss_pred -CEEEEeCCCc---cCCCCCEEEEcHHHHHHHHHc--CcchhhcCCEEEEechhhhcccchhHHHHHHHHhc--------
Confidence 5677777653 234678999999999888766 45678999999999999999999999999888765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhh------ccccccccccccceEEEEecc--ccc---cch
Q 000107 679 SDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQ------AALYETNFRPVPLEEYIKVGN--AIY---SKK 747 (2191)
Q Consensus 679 ~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~------a~l~~~~~RpvpL~e~i~~~~--~~~---~~~ 747 (2191)
+..+|+|+||||++|..+++.|++ ..++...+||+|++.++.... ..+ ...
T Consensus 221 ------------------~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~ 282 (1010)
T 2xgj_A 221 ------------------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEK 282 (1010)
T ss_dssp ------------------CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTT
T ss_pred ------------------CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccc
Confidence 356899999999999999999996 335677899999988876422 111 000
Q ss_pred ----hhHHHHHHHhhcc-------------------CC-----CChhHHHHHHHHHHhcC-CcEEEEeCchhHHHHHHHH
Q 000107 748 ----MDVVRTILTAANL-------------------GG-----KDPDHIVELCDEVVQEG-HSVLIFCSSRKGCESTARH 798 (2191)
Q Consensus 748 ----~~~~r~l~~~~~~-------------------~~-----~d~d~l~~Ll~e~~~~g-~~vLVF~~Sr~~~e~lA~~ 798 (2191)
............. .. .+...+..++..+...+ .++||||+|++.|+.++..
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~ 362 (1010)
T 2xgj_A 283 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALK 362 (1010)
T ss_dssp CCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHH
Confidence 0000000000000 00 00334555665555444 5999999999999999988
Q ss_pred HHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCC------ChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceE
Q 000107 799 VSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGL------DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRV 872 (2191)
Q Consensus 799 L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gl------d~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikV 872 (2191)
|... +... ..+...+....+.......+. ...+..++..||++|||+|++.+|..+++.|++|.++|
T Consensus 363 L~~~----~~~~---~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikV 435 (1010)
T 2xgj_A 363 MSKL----DFNS---DDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKV 435 (1010)
T ss_dssp TTTS----CCCC---HHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSE
T ss_pred HHhC----CCCC---hHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcE
Confidence 7431 1110 001111111111100000001 12345667789999999999999999999999999999
Q ss_pred EEecccccccCCCCCceEEee----cCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh-hHHHHHhhhccCCCC
Q 000107 873 LTATSTLAAGVNLPARRVIFR----QPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE-EVKKIMGLLNESCPP 947 (2191)
Q Consensus 873 LVATstLa~GVNLPav~VVI~----~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~-e~~~~~~ll~~~l~~ 947 (2191)
||||+++++|||+|+++|||+ ++..+..+++..+|.||+|||||.|.|..|.||+++++. +...+.+++.....+
T Consensus 436 LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~ 515 (1010)
T 2xgj_A 436 LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADR 515 (1010)
T ss_dssp EEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCC
T ss_pred EEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcc
Confidence 999999999999999999998 443334477999999999999999999899999999875 566777888888889
Q ss_pred cccccccccchhhHHHHHHHhcc
Q 000107 948 LHSCLSEDKNGMTHAILEVVAGG 970 (2191)
Q Consensus 948 l~S~L~~~~~~l~~~iLeiia~g 970 (2191)
+.|.+... ...+|.++...
T Consensus 516 l~s~f~~~----~~~ilnll~~~ 534 (1010)
T 2xgj_A 516 LDSAFHLG----YNMILNLMRVE 534 (1010)
T ss_dssp CCCCCCCC----HHHHHHHHHSS
T ss_pred cccccCCc----HHHHHHHHHhc
Confidence 98887643 33456666543
No 12
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-42 Score=476.22 Aligned_cols=420 Identities=25% Similarity=0.416 Sum_probs=303.2
Q ss_pred HHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 518 KKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 518 ~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
...++..|+|+|.++++. ++.|+++|++||||||||++|+++++..+ ..++++||++|+++|+.|+++.|.+++.
T Consensus 178 ~~~~~f~ltp~Q~~AI~~--i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~~-- 252 (1108)
T 3l9o_A 178 ARTYPFTLDPFQDTAISC--IDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-- 252 (1108)
T ss_dssp SSCCSSCCCHHHHHHHHH--HTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTS--
T ss_pred HHhCCCCCCHHHHHHHHH--HHcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHHHhC--
Confidence 344556899999999987 89999999999999999999999999876 4688999999999999999999998875
Q ss_pred CCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCC
Q 000107 598 GRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEG 677 (2191)
Q Consensus 598 g~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~ 677 (2191)
.|+.++|+.. ...+++|+|+|||++..++.+ ....+.++++|||||+|.+.+.+||..++.++..+
T Consensus 253 --~VglltGd~~---~~~~~~IlV~Tpe~L~~~L~~--~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l------- 318 (1108)
T 3l9o_A 253 --DVGLMTGDIT---INPDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL------- 318 (1108)
T ss_dssp --SEEEECSSCB---CCCSCSEEEEEHHHHHHHHHH--CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS-------
T ss_pred --CccEEeCccc---cCCCCCEEEeChHHHHHHHHc--CccccccCCEEEEhhhhhccccchHHHHHHHHHhc-------
Confidence 4666777653 445689999999999888765 34457899999999999999999999999888765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc------cccccccccccceEEEEeccc--ccc---c
Q 000107 678 TSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA------ALYETNFRPVPLEEYIKVGNA--IYS---K 746 (2191)
Q Consensus 678 ~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a------~l~~~~~RpvpL~e~i~~~~~--~~~---~ 746 (2191)
+..+|+|+||||++|..+++.|++. .++...+||+|++.++..... .+. .
T Consensus 319 -------------------~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 319 -------------------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp -------------------CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEET
T ss_pred -------------------CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeecc
Confidence 3578999999999999999999874 356778999999887753211 110 0
Q ss_pred h----hhHHHHHHHhhc------------------------cCCCChhHHHHHHHHHHhcC-CcEEEEeCchhHHHHHHH
Q 000107 747 K----MDVVRTILTAAN------------------------LGGKDPDHIVELCDEVVQEG-HSVLIFCSSRKGCESTAR 797 (2191)
Q Consensus 747 ~----~~~~r~l~~~~~------------------------~~~~d~d~l~~Ll~e~~~~g-~~vLVF~~Sr~~~e~lA~ 797 (2191)
. ............ ........+..++..+...+ .++||||++++.|+.++.
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~ 459 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELAL 459 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHH
Confidence 0 000000000000 00001445555666555544 699999999999999998
Q ss_pred HHHHHHhhcccccCCCCchhhh-hHHHHHHhhcCCCCC--ChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEE
Q 000107 798 HVSKFLKKFSINVHSSDSEFID-ITSAIDALRRCPAGL--DPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874 (2191)
Q Consensus 798 ~L~~~l~~~~~~~~~~~~~~~~-~~~~~~~L~~~~~gl--d~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLV 874 (2191)
.|........ ........ +...+..+......+ ...+..++..||++|||+|++.+|..|++.|++|.++|||
T Consensus 460 ~L~~~~~~~~----~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLV 535 (1108)
T 3l9o_A 460 KMSKLDFNSD----DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLF 535 (1108)
T ss_dssp HTCSHHHHCC--------CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHhccCCCH----HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEE
Confidence 8854321110 00000000 000000010000000 1235567788999999999999999999999999999999
Q ss_pred ecccccccCCCCCceEEeecCCC--C--CcccCcccccccccccCCCCCCCceEEEEEeChh-hHHHHHhhhccCCCCcc
Q 000107 875 ATSTLAAGVNLPARRVIFRQPRI--G--RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE-EVKKIMGLLNESCPPLH 949 (2191)
Q Consensus 875 ATstLa~GVNLPav~VVI~~p~~--g--~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~-e~~~~~~ll~~~l~~l~ 949 (2191)
||+++++|||+|++++||++..+ + ..+++..+|+||+|||||.|.|..|.||+++++. +...+..++.....++.
T Consensus 536 AT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~ 615 (1108)
T 3l9o_A 536 ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLD 615 (1108)
T ss_dssp EESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_pred ECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccc
Confidence 99999999999999999976432 2 2367889999999999999999999999999875 45667788999888999
Q ss_pred cccccccchhhHHHHHHHhcccccCHHHHHHHHHhhhc
Q 000107 950 SCLSEDKNGMTHAILEVVAGGIVQTAEDIHRYVRCTLL 987 (2191)
Q Consensus 950 S~L~~~~~~l~~~iLeiia~gi~~t~~di~~~l~~tll 987 (2191)
|.+.... ..+|.++..+-. + ...++..+|.
T Consensus 616 S~f~~~y----~~ilnll~~~~~-~---~~~~l~~sf~ 645 (1108)
T 3l9o_A 616 SAFHLGY----NMILNLMRVEGI-S---PEFMLEHSFF 645 (1108)
T ss_dssp CCCCCCH----HHHHHHHHSTTC-C---HHHHHHHSSH
T ss_pred cccCCcH----HHHHHHHHhcCC-C---HHHHHHHHHH
Confidence 9987533 335566554322 2 2455555553
No 13
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=100.00 E-value=3.3e-43 Score=454.75 Aligned_cols=301 Identities=18% Similarity=0.182 Sum_probs=225.5
Q ss_pred hcCCCCCCCCCCCCCCCCCcHHHHHHhhh-------cCCcHHHHHHHHHHHHHHHhHHHHHHHHhhh-------h-----
Q 000107 1802 HLKLPIPEGHNKGKQHPSTDKHCLDLLRH-------EHPIVPVIKEHRTLAKLLNCTLGSICSLARI-------S----- 1862 (2191)
Q Consensus 1802 ~l~lp~~~~~~k~k~~~ST~~~vL~~L~~-------~hpi~~~ile~R~l~Kllsty~~~l~~~~~~-------~----- 1862 (2191)
.++||.+++....- +-..+|+-|.++.+ ..+.+..+|+......-...+-+-+...+-. +
T Consensus 682 ffKLPHkdG~~~nv-gsPLsK~fl~~fE~G~L~s~~~~~~A~~aLe~n~~~SYW~saRdRI~sQmVVw~~~~~~p~~~~~ 760 (1172)
T 3ikm_A 682 FFKLPHKDGNSCNV-GSPFAKDFLPKMEDGTLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAVIR 760 (1172)
T ss_dssp BCCCCCTTTCSSCC-CCSSCSTHHHHHHTSSCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSSSTTTTTT
T ss_pred EEeCCCCCCCCCCc-CCcccHHHHHHHHhCccccccCcHHHHHHHHHHHHhHHHHHHHHHhhhheEEeeccccccccccc
Confidence 35788665532222 23567788887753 2456777777554433333333333322110 0
Q ss_pred -----cCCCceeeccccccccccccccccCCCCccccccccccccccccccCCCcccccccccccccccccCCCeEEEEe
Q 000107 1863 -----MSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHMVEFKMSNEDIYGGNAEVDHCKINARDFFIPSQENWILLAA 1937 (2191)
Q Consensus 1863 -----~~~~~grih~~~~q~gTaTGRlSss~PNLQNiPk~~~~~~~~~~g~~~~~~~~~~~~~iR~~Fi~~~~G~~lvsa 1937 (2191)
.....|+|||.++++||+|||.....||.-+.|+. ...|+ .||+||+|+ +||+||+|
T Consensus 761 ~~~~~~~~~~g~I~p~v~~~GtvT~Ra~~~~~~tas~~~~------~~~Gr-----------eiR~aFva~-~G~~lvsA 822 (1172)
T 3ikm_A 761 HPDYDEEGLYGAILPQVVTAGTITRRAVEPTWLTASNARP------DRVGS-----------ELKAMVQAP-PGYTLVGA 822 (1172)
T ss_dssp TTCCCSSSCCCBCCCCCCSSCTTTCCCCCTTGGGCCCCSS------CSTTS-----------CCHHHHCCC-TTEEEEEE
T ss_pred cccccccccCceeeeeeeecCccccccccCCcceecCCCC------ChhhH-----------HhHheEeCC-CCCEEEEe
Confidence 01235999999999999999954444444444431 11344 799999996 99999999
Q ss_pred ccchhHHHHHHHhcCChHH--------------HHHhcCCCchHHHHHHHHHcCCCCCCCChhhhcccchhhhhhhcCCC
Q 000107 1938 DYSQIELRLMAHFSKDPAL--------------IGLLSKPHGDVFTMIAARWTGRSEDSVGSQERDQTKRLIYGILYGMG 2003 (2191)
Q Consensus 1938 DySQIELRilAhlS~D~~L--------------i~af~~~g~Dih~~~Aa~~~g~~~e~Vt~~~R~~AK~i~fGiiYGmG 2003 (2191)
||||||||| ||+++|+.| +.+|++ |.|||+.||+.+ |+ .|+.||++|||+|||||
T Consensus 823 DySQIELRI-Aals~D~~l~~~~g~~A~~~~~L~~af~~-g~DIH~~TA~~v-gi--------~Rr~AK~vNFGiIYG~g 891 (1172)
T 3ikm_A 823 DVDSQELWI-AAVLGDAHFAGMHGCTAFGWMTLQGRKSR-GTDLHSKTATTV-GI--------SREHAKIFNYGRIYGAG 891 (1172)
T ss_dssp ECTTHHHHH-HHHHHHHHSSSTTCSTTTTTTCSCCTTTC-THHHHHHHHHTT-CC--------CSHHHHHHHHHHHHSCC
T ss_pred cccHHHHHH-HHHcCChhhcccccccchhhhhhhhhhcc-CCcHHHHHHHHh-CC--------ChhhchheeeehhcCCc
Confidence 999999998 889999998 445887 899999999988 76 39999999999999999
Q ss_pred h---hhhhhhcC--CCHHHHHHHHHHHHHhChhHHHHHH-----HHHHH------HHhcCeEE-----------------
Q 000107 2004 P---NTLSEQLN--CSSNEAKEKIKSFKSSFPGVASWLH-----VAVSS------CHQKGYVE----------------- 2050 (2191)
Q Consensus 2004 ~---~~La~~l~--is~~eA~~~i~~f~~~yp~v~~~~~-----~~~~~------a~~~GyV~----------------- 2050 (2191)
+ ++|++++| |+.+||+++|++||++||||+.|+. ..... +.++|||.
T Consensus 892 ~~~a~gL~~ql~~~is~~eAk~~i~~yf~~y~gv~~y~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~~~s~~ 971 (1172)
T 3ikm_A 892 QPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQW 971 (1172)
T ss_dssp THHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHCSSSSCSSSCHHHHHHHHHSSSSCCCCSSCCCCCCCHHHHSCSSSCHH
T ss_pred hHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCcChhhhhhccccchhhhhccccccccccccchhhhhhhhhhcccccccc
Confidence 6 99999988 9999999999999999999999841 22222 33567766
Q ss_pred ---cccCCeeecCcccC---------------CCh-------------hhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHH
Q 000107 2051 ---SLKGRKRFLSKIKF---------------GNN-------------KEKSKAQRQAVNSICQGSAADIIKIAMINIHS 2099 (2191)
Q Consensus 2051 ---Tl~GRrr~lp~i~s---------------~~~-------------~~r~~aeRqAvNt~iQGsAADI~K~Ami~i~~ 2099 (2191)
+++|||+++.+..| ..+ ..+....|.++|++|||||+|++|++||.++.
T Consensus 972 ~~~~~~~r~~w~GGtES~mFNkLE~iA~s~~P~TP~LGc~It~AL~~~~~~~~~~~sriNw~iQsSa~D~lhl~~v~m~~ 1051 (1172)
T 3ikm_A 972 KKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKW 1051 (1172)
T ss_dssp HHTTTTTTHHHHHHHHHHHHSCSSSSSCCSSSCCCC---------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccceecCChhHHHHHHHHHHhccCCCCCCcccchhhhhhCccccccchhhhhhchhccchHHHHHHHHHHHHHH
Confidence 78999998854333 111 14667789999999999999999999999999
Q ss_pred HHHcCCCCCCChhhhhhhccCCceeEEEEecceeeeeeChhhHHHHHH
Q 000107 2100 IIVGGVYKPDSSLAANFQMLKGRCRLLLQVHDELVLEVDPSVIKEAVS 2147 (2191)
Q Consensus 2100 ~l~~~~~~~~~~~~~~~~~~~~~~~lvlqVHDELv~Evp~~~~~~v~~ 2147 (2191)
.+.++ +..+||++||||||+|+|++++...+|-
T Consensus 1052 l~~~~---------------~l~ar~~l~vHDEl~~~v~~~dkyRaAL 1084 (1172)
T 3ikm_A 1052 LFEEF---------------AIDGRFCISIHDEVRYLVREEDRYRAAL 1084 (1172)
T ss_dssp HHHSS---------------SCCCBCCCCBTTEEEEEEESTTHHHHHH
T ss_pred HHHHh---------------CCCceEEEEEcceEEEeccHHHHHHHHH
Confidence 99886 6789999999999999999998875543
No 14
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-40 Score=425.48 Aligned_cols=344 Identities=19% Similarity=0.267 Sum_probs=263.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-------CCEEEEEchhHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-------GKMALLVLPYVS 581 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-------g~kaL~I~P~ra 581 (2191)
|++.+.+.+++.||.+|+|+|.++++. ++.|+|++++||||||||++|.++++..+... +.++||++|+++
T Consensus 63 l~~~l~~~l~~~g~~~pt~iQ~~ai~~--i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 63 LRDIIIDNVNKSGYKIPTPIQKCSIPV--ISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHH
Confidence 789999999999999999999999987 89999999999999999999999999988753 458999999999
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 582 ICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 582 LA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
||.|++++++++....++++..++|+.... .+..+++|+|+||+++..++.+ ....+.++++||+||+|++.+.
T Consensus 141 La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~~~~lVlDEah~~~~~ 218 (434)
T 2db3_A 141 LAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR--TFITFEDTRFVVLDEADRMLDM 218 (434)
T ss_dssp HHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT--TSCCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh--CCcccccCCeEEEccHhhhhcc
Confidence 999999999999888888888888876431 1345789999999999888875 3456889999999999999999
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH-Hhhcccccc-c---cccc
Q 000107 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD-WLQAALYET-N---FRPV 731 (2191)
Q Consensus 658 ~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~-wL~a~l~~~-~---~Rpv 731 (2191)
++...+..++..+. ..+..|+++||||+++ ...++. |+....+.. . ....
T Consensus 219 gf~~~~~~i~~~~~------------------------~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 274 (434)
T 2db3_A 219 GFSEDMRRIMTHVT------------------------MRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACS 274 (434)
T ss_dssp TTHHHHHHHHHCTT------------------------SCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCT
T ss_pred CcHHHHHHHHHhcC------------------------CCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccccccc
Confidence 88888877765541 1356899999999974 233322 222111100 0 0000
Q ss_pred cceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccC
Q 000107 732 PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVH 811 (2191)
Q Consensus 732 pL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~ 811 (2191)
.+...+..- ... .....+..++. ..+.++||||++++.|+.++..|.+.
T Consensus 275 ~i~~~~~~~-----~~~--------------~k~~~l~~~l~---~~~~~~lVF~~t~~~a~~l~~~L~~~--------- 323 (434)
T 2db3_A 275 DVKQTIYEV-----NKY--------------AKRSKLIEILS---EQADGTIVFVETKRGADFLASFLSEK--------- 323 (434)
T ss_dssp TEEEEEEEC-----CGG--------------GHHHHHHHHHH---HCCTTEEEECSSHHHHHHHHHHHHHT---------
T ss_pred ccceEEEEe-----CcH--------------HHHHHHHHHHH---hCCCCEEEEEeCcHHHHHHHHHHHhC---------
Confidence 111111100 000 01122333332 33456999999999999988877541
Q ss_pred CCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEE
Q 000107 812 SSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVI 891 (2191)
Q Consensus 812 ~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VV 891 (2191)
.+.+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++|
T Consensus 324 -------------------------------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~V 372 (434)
T 2db3_A 324 -------------------------------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHV 372 (434)
T ss_dssp -------------------------------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEE
T ss_pred -------------------------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEE
Confidence 2248899999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh-h---HHHHHhhhccCCCCc
Q 000107 892 FRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE-E---VKKIMGLLNESCPPL 948 (2191)
Q Consensus 892 I~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~-e---~~~~~~ll~~~l~~l 948 (2191)
|+++.+. +..+|+||+||+||.| ..|.|++|++++ + ...+.+++.....++
T Consensus 373 I~~d~p~----~~~~y~qriGR~gR~g--~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~v 427 (434)
T 2db3_A 373 INYDMPS----KIDDYVHRIGRTGRVG--NNGRATSFFDPEKDRAIAADLVKILEGSGQTV 427 (434)
T ss_dssp EESSCCS----SHHHHHHHHTTSSCTT--CCEEEEEEECTTTCGGGHHHHHHHHHHTTCCC
T ss_pred EEECCCC----CHHHHHHHhcccccCC--CCCEEEEEEeccccHHHHHHHHHHHHHcCCCC
Confidence 9987765 8899999999999999 789999999853 2 334445554433333
No 15
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.7e-40 Score=413.11 Aligned_cols=336 Identities=18% Similarity=0.257 Sum_probs=255.2
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC------------------
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG------------------ 570 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g------------------ 570 (2191)
|++.+.+.+...||.+|+|+|.++++. ++.++|++++||||+|||++|.++++..+...+
T Consensus 22 l~~~l~~~l~~~~~~~~~~~Q~~~i~~--i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2i4i_A 22 MGEIIMGNIELTRYTRPTPVQKHAIPI--IKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 99 (417)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccccccc
Confidence 779999999999999999999999987 899999999999999999999999998876532
Q ss_pred --CEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccc
Q 000107 571 --KMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIG 644 (2191)
Q Consensus 571 --~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~ 644 (2191)
.++||++|+++|+.|+++.+++++...++++..++|+.... .+..+++|+|+||+++..++.. ....+.+++
T Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~ 177 (417)
T 2i4i_A 100 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER--GKIGLDFCK 177 (417)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT--TSBCCTTCC
T ss_pred CCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc--CCcChhhCc
Confidence 57999999999999999999999888889999888876431 1345689999999999888765 344688899
Q ss_pred eEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH-HHhhcc
Q 000107 645 IIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA-DWLQAA 722 (2191)
Q Consensus 645 lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la-~wL~a~ 722 (2191)
+|||||+|++.+.++...+..++..... ......|+++||||+++ ...+. .|++..
T Consensus 178 ~iViDEah~~~~~~~~~~~~~i~~~~~~----------------------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 235 (417)
T 2i4i_A 178 YLVLDEADRMLDMGFEPQIRRIVEQDTM----------------------PPKGVRHTMMFSATFPKEIQMLARDFLDEY 235 (417)
T ss_dssp EEEESSHHHHHHTTCHHHHHHHHTSSSC----------------------CCBTTBEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred EEEEEChhHhhccCcHHHHHHHHHhccC----------------------CCcCCcEEEEEEEeCCHHHHHHHHHHcCCC
Confidence 9999999999988777777666543210 01236899999999975 33333 344332
Q ss_pred ccccccc----cccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHH
Q 000107 723 LYETNFR----PVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARH 798 (2191)
Q Consensus 723 l~~~~~R----pvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~ 798 (2191)
.+....+ +-.+...+... ... ...+.+..++.. ...++++||||++++.++.++..
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~-----~~~--------------~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~ 295 (417)
T 2i4i_A 236 IFLAVGRVGSTSENITQKVVWV-----EES--------------DKRSFLLDLLNA-TGKDSLTLVFVETKKGADSLEDF 295 (417)
T ss_dssp EEEEEC----CCSSEEEEEEEC-----CGG--------------GHHHHHHHHHHT-CCTTCEEEEECSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCccCceEEEEEe-----ccH--------------hHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHHH
Confidence 2111000 00111111100 000 011122333322 12467899999999999998887
Q ss_pred HHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEeccc
Q 000107 799 VSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878 (2191)
Q Consensus 799 L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATst 878 (2191)
|.+. ...+..+||+++.++|..+++.|++|.++|||||++
T Consensus 296 L~~~----------------------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 335 (417)
T 2i4i_A 296 LYHE----------------------------------------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 335 (417)
T ss_dssp HHHT----------------------------------------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHH
T ss_pred HHHC----------------------------------------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECCh
Confidence 7541 234899999999999999999999999999999999
Q ss_pred ccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH
Q 000107 879 LAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 879 La~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~ 936 (2191)
+++|||+|++++||++..+. +..+|+||+|||||.| ..|.|++++++.+...
T Consensus 336 ~~~Gidip~v~~Vi~~~~p~----s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 336 AARGLDISNVKHVINFDLPS----DIEEYVHRIGRTGRVG--NLGLATSFFNERNINI 387 (417)
T ss_dssp HHTTSCCCCEEEEEESSCCS----SHHHHHHHHTTBCC----CCEEEEEEECGGGGGG
T ss_pred hhcCCCcccCCEEEEEcCCC----CHHHHHHhcCccccCC--CCceEEEEEccccHHH
Confidence 99999999999999876654 8899999999999999 6899999999876443
No 16
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=9.5e-39 Score=420.88 Aligned_cols=350 Identities=17% Similarity=0.224 Sum_probs=266.0
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccc--cCCeEEEEcCCCCchhHHHHHHHHHHHHhcC------CEEEEEchhH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVL--QRRNLVYCASTSAGKSFVAEILMLRRLISTG------KMALLVLPYV 580 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il--~gknlIi~APTGSGKTlvael~iL~~ll~~g------~kaL~I~P~r 580 (2191)
|++.+.+.+.+.||.+|+|+|.++|+. ++ .++++|++||||+|||++|++++++.+...+ .++|||+|++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKP--ILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 156 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHH--HHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcH
Confidence 889999999999999999999999986 77 6899999999999999999999999887643 4899999999
Q ss_pred HHHHHHHHHHHHHhhc----cCCeEEEEeccCCCCC-----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccc
Q 000107 581 SICAEKAEHLEVLLEP----LGRHVRSYYGNQGGGS-----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDEL 651 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~----lg~~V~~~~G~~~~~~-----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEa 651 (2191)
+||.|+++.++.++.. .+..+..++|+..... ...+++|+||||+++..++.+. ....++.+++|||||+
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc-cccccccceEEEEeCH
Confidence 9999999999987542 2355666777653211 1235799999999998888763 2335788999999999
Q ss_pred ccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccc---c-c-
Q 000107 652 HMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAAL---Y-E- 725 (2191)
Q Consensus 652 H~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l---~-~- 725 (2191)
|++.+++++..++.++..+...... ...++|+|+||||+++ ...+..++.... + .
T Consensus 236 h~l~~~~f~~~~~~i~~~l~~~~~~-------------------~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~ 296 (563)
T 3i5x_A 236 DRLLEIGFRDDLETISGILNEKNSK-------------------SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDT 296 (563)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSS-------------------CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEES
T ss_pred HHHhccchHHHHHHHHHhhhhcccc-------------------CccCceEEEEEccCCHHHHHHHHHhcCCCceEEEec
Confidence 9999999999999999998765321 2357899999999987 355554443211 0 0
Q ss_pred -ccccccc---ceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH---hcCCcEEEEeCchhHHHHHHHH
Q 000107 726 -TNFRPVP---LEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV---QEGHSVLIFCSSRKGCESTARH 798 (2191)
Q Consensus 726 -~~~Rpvp---L~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~---~~g~~vLVF~~Sr~~~e~lA~~ 798 (2191)
...++.. +...+..... ..... ......+...+ ..++++||||+|++.|+.++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~ 358 (563)
T 3i5x_A 297 VDKNEPEAHERIDQSVVISEK----FANSI--------------FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSI 358 (563)
T ss_dssp SCSSSCSSCTTEEEEEEEESS----TTHHH--------------HHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHH
T ss_pred cCCCCccccccCceEEEECch----hHhhH--------------HHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHH
Confidence 0001110 1111110000 00000 01111111111 3467999999999999999998
Q ss_pred HHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEeccc
Q 000107 799 VSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATST 878 (2191)
Q Consensus 799 L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATst 878 (2191)
|.+.+.. ...+..|||+|++.+|..+++.|++|.++|||||++
T Consensus 359 L~~~~~~-------------------------------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~ 401 (563)
T 3i5x_A 359 LKNEFKK-------------------------------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 401 (563)
T ss_dssp HHHHHTT-------------------------------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG
T ss_pred HHHhccC-------------------------------------CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch
Confidence 8764321 234899999999999999999999999999999999
Q ss_pred ccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhh
Q 000107 879 LAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLL 941 (2191)
Q Consensus 879 La~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll 941 (2191)
+++|||+|++++||+++.+. +..+|+||+|||||.| ..|.|++++.+.+...+..+.
T Consensus 402 ~~~GiDip~v~~VI~~~~p~----s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 402 GARGMDFPNVHEVLQIGVPS----ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp GTSSCCCTTCCEEEEESCCS----STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred hhcCCCcccCCEEEEECCCC----chhhhhhhcCccccCC--CCceEEEEEchhHHHHHHHHH
Confidence 99999999999999877665 8899999999999999 789999999998877666554
No 17
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.4e-39 Score=443.59 Aligned_cols=394 Identities=26% Similarity=0.367 Sum_probs=289.3
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.+| +|+++|.++++. ++.|+++++++|||||||++|++++...+ ..++++||++|+++|+.|+++++.+++. ++
T Consensus 36 ~~f-~l~~~Q~~aI~~--il~g~~vlv~apTGsGKTlv~~~~i~~~~-~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYH--LEQGDSVFVAAHTSAGKTVVAEYAIAMAH-RNMTKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CSS-CCCHHHHHHHHH--HHTTCEEEEECCTTSCSHHHHHHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred CCC-CCCHHHHHHHHH--HHcCCCEEEEECCCCcHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 456 589999999987 89999999999999999999999887654 4688999999999999999999988654 67
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCC
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTS 679 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~ 679 (2191)
.+..++|+.. .....+|+|+|||++.+++.+ ....+.++++|||||+|++.+++||..++.++..+
T Consensus 110 ~v~~l~G~~~---~~~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l--------- 175 (997)
T 4a4z_A 110 NIGLITGDVQ---INPDANCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML--------- 175 (997)
T ss_dssp CEEEECSSCE---ECTTSSEEEEEHHHHHHHHHH--TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS---------
T ss_pred eEEEEeCCCc---cCCCCCEEEECHHHHHHHHHh--CchhhcCCCEEEEECcccccccchHHHHHHHHHhc---------
Confidence 7888888653 335689999999999887765 44567899999999999999999999999888665
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc------ccccccccccceEEEEeccccccch------
Q 000107 680 DSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA------LYETNFRPVPLEEYIKVGNAIYSKK------ 747 (2191)
Q Consensus 680 ~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~------l~~~~~RpvpL~e~i~~~~~~~~~~------ 747 (2191)
++.+|+|+||||++|..++++|++.. ++...+||+|+..++......+...
T Consensus 176 -----------------~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~ 238 (997)
T 4a4z_A 176 -----------------PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEF 238 (997)
T ss_dssp -----------------CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCB
T ss_pred -----------------ccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhh
Confidence 35789999999999999999999842 5678999999998876543322110
Q ss_pred ----hhHHHHHHH-h------------------------------------------------------------hccCC
Q 000107 748 ----MDVVRTILT-A------------------------------------------------------------ANLGG 762 (2191)
Q Consensus 748 ----~~~~r~l~~-~------------------------------------------------------------~~~~~ 762 (2191)
......... . .....
T Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (997)
T 4a4z_A 239 LEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDG 318 (997)
T ss_dssp CHHHHHHHHHHHC-----------------------------------------------------------------CC
T ss_pred hHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000000000 0 00000
Q ss_pred CChhHHHHHHHHHHhc-CCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCC----CC--C
Q 000107 763 KDPDHIVELCDEVVQE-GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPA----GL--D 835 (2191)
Q Consensus 763 ~d~d~l~~Ll~e~~~~-g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----gl--d 835 (2191)
.....+..++..+... ..++||||+|++.|+.++..|.. .+... ..+...+...+++....-. .+ .
T Consensus 319 ~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~----~~~~~---~~e~~~i~~~~~~~~~~l~~~d~~l~~~ 391 (997)
T 4a4z_A 319 PSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEG----INFCN---NKEKSQIHMFIEKSITRLKKEDRDLPQI 391 (997)
T ss_dssp CCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTT----CCCCC---HHHHHHHHHHHHHHHTTSCHHHHTCHHH
T ss_pred cchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhc----CCCCC---HHHHHHHHHHHHHHHHhcchhhhcchhH
Confidence 1222334444444333 37999999999999999888743 11110 0111111111111100000 00 1
Q ss_pred hhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC----CCCcccCcccccccc
Q 000107 836 PVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR----IGRDFIDGTRYRQMA 911 (2191)
Q Consensus 836 ~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~----~g~~~is~~~y~Qmi 911 (2191)
..+..++.+||++|||+|++.+|..|++.|+.|.++|||||+++++|||+|++.|||.... .+..+++..+|.||+
T Consensus 392 ~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~ 471 (997)
T 4a4z_A 392 LKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMA 471 (997)
T ss_dssp HHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHH
T ss_pred HHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHh
Confidence 2356778899999999999999999999999999999999999999999999888874321 122356889999999
Q ss_pred cccCCCCCCCceEEEEEeC--hhhHHHHHhhhccCCCCcccccccccc
Q 000107 912 GRAGRTGIDTKGESMLICK--PEEVKKIMGLLNESCPPLHSCLSEDKN 957 (2191)
Q Consensus 912 GRAGR~G~d~~Ge~ill~~--~~e~~~~~~ll~~~l~~l~S~L~~~~~ 957 (2191)
|||||.|.|..|.||+++. ..+...+..++....+++.|.+....+
T Consensus 472 GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~yn 519 (997)
T 4a4z_A 472 GRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYN 519 (997)
T ss_dssp GGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHH
T ss_pred cccccCCCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchH
Confidence 9999999999999999994 345666777888888888888765444
No 18
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.9e-38 Score=394.33 Aligned_cols=336 Identities=20% Similarity=0.220 Sum_probs=252.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccC--CeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQR--RNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICA 584 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g--knlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~ 584 (2191)
|++.+.+.+.+.||.+|+|+|.++++. ++.+ +++++++|||+|||++|.++++..+.. .++++||++|+++|+.
T Consensus 12 l~~~l~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 89 (395)
T 3pey_A 12 LAPELLKGIYAMKFQKPSKIQERALPL--LLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELAR 89 (395)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHH
Confidence 678999999999999999999999987 7776 999999999999999999999987654 4668999999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc-cchhHHH
Q 000107 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD-QNRGYLL 663 (2191)
Q Consensus 585 q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d-~~RG~~l 663 (2191)
|+++.++++....++.+...+++........+.+|+|+||+++..++.+ ....+.++++|||||+|.+.+ .++...+
T Consensus 90 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 167 (395)
T 3pey_A 90 QTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRR--KLMQLQKIKIFVLDEADNMLDQQGLGDQC 167 (395)
T ss_dssp HHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHT--TCBCCTTCCEEEEETHHHHHHSTTHHHHH
T ss_pred HHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHc--CCcccccCCEEEEEChhhhcCccccHHHH
Confidence 9999999988878888888887765544455789999999999887765 444688999999999999876 3333333
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccc--cc---cccccccceEEE
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAAL--YE---TNFRPVPLEEYI 737 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l--~~---~~~RpvpL~e~i 737 (2191)
..++.. .+...|+|+||||+++ ...+..++.... +. .......+...+
T Consensus 168 ~~~~~~--------------------------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (395)
T 3pey_A 168 IRVKRF--------------------------LPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLY 221 (395)
T ss_dssp HHHHHT--------------------------SCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEE
T ss_pred HHHHHh--------------------------CCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEE
Confidence 322211 1356899999999985 344444432211 11 111111111111
Q ss_pred EeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHh--cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCc
Q 000107 738 KVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ--EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815 (2191)
Q Consensus 738 ~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~--~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~ 815 (2191)
... . ........+..... .++++||||++++.|+.++..|...
T Consensus 222 ~~~----~------------------~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~------------- 266 (395)
T 3pey_A 222 MDC----K------------------NEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE------------- 266 (395)
T ss_dssp EEC----S------------------SHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT-------------
T ss_pred EEc----C------------------chHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc-------------
Confidence 100 0 00011112222222 3579999999999999888877541
Q ss_pred hhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC
Q 000107 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP 895 (2191)
Q Consensus 816 ~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p 895 (2191)
...+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++.
T Consensus 267 ---------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 319 (395)
T 3pey_A 267 ---------------------------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD 319 (395)
T ss_dssp ---------------------------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESS
T ss_pred ---------------------------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcC
Confidence 12388899999999999999999999999999999999999999999999765
Q ss_pred CC--CCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHH
Q 000107 896 RI--GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM 938 (2191)
Q Consensus 896 ~~--g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~ 938 (2191)
.+ ....++..+|.||+|||||.| ..|.|++++.+.+...+.
T Consensus 320 ~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~ 362 (395)
T 3pey_A 320 LPTLANGQADPATYIHRIGRTGRFG--RKGVAISFVHDKNSFNIL 362 (395)
T ss_dssp CCBCTTSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHHHHHHH
T ss_pred CCCCCcCCCCHHHhhHhccccccCC--CCceEEEEEechHHHHHH
Confidence 43 345568899999999999999 689999999875544333
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4e-38 Score=396.44 Aligned_cols=342 Identities=20% Similarity=0.281 Sum_probs=258.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+|+|.++++. ++.++++++++|||+|||++|.++++..+.. .+.++||++|+++|+.|+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 105 (400)
T 1s2m_A 28 LKRELLMGIFEAGFEKPSPIQEEAIPV--AITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQT 105 (400)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHH
Confidence 779999999999999999999999987 8899999999999999999999999987654 456899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
++.++.++...++.+..++|+.... ....+++|+|+||+++..++.+ ....+.++++|||||+|.+.+..++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~~~~~ 183 (400)
T 1s2m_A 106 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSRDFKTI 183 (400)
T ss_dssp HHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSHHHHHH
T ss_pred HHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh--CCcccccCCEEEEeCchHhhhhchHHH
Confidence 9999999888899998888875421 1345679999999998887765 345688899999999999887655554
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccc-------cccccccceE
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYE-------TNFRPVPLEE 735 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~-------~~~RpvpL~e 735 (2191)
++.++..+ +...|+++||||++. .+..++...+.. .......+..
T Consensus 184 ~~~i~~~~--------------------------~~~~~~i~lSAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (400)
T 1s2m_A 184 IEQILSFL--------------------------PPTHQSLLFSATFPL--TVKEFMVKHLHKPYEINLMEELTLKGITQ 235 (400)
T ss_dssp HHHHHTTS--------------------------CSSCEEEEEESCCCH--HHHHHHHHHCSSCEEESCCSSCBCTTEEE
T ss_pred HHHHHHhC--------------------------CcCceEEEEEecCCH--HHHHHHHHHcCCCeEEEeccccccCCcee
Confidence 44443222 356899999999873 333333322111 0111111112
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCc
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~ 815 (2191)
++.... ... ....+..++.. ..++++||||++++.++.++..|...
T Consensus 236 ~~~~~~-----~~~--------------k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~------------- 281 (400)
T 1s2m_A 236 YYAFVE-----ERQ--------------KLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDL------------- 281 (400)
T ss_dssp EEEECC-----GGG--------------HHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHH-------------
T ss_pred EEEEec-----hhh--------------HHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhc-------------
Confidence 211100 000 01122223222 24579999999999999988877542
Q ss_pred hhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC
Q 000107 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP 895 (2191)
Q Consensus 816 ~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p 895 (2191)
+.++.++||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||++.
T Consensus 282 ---------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 282 ---------------------------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD 334 (400)
T ss_dssp ---------------------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESS
T ss_pred ---------------------------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeC
Confidence 23488999999999999999999999999999999999999999999999876
Q ss_pred CCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHh---hhccCCCCcc
Q 000107 896 RIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMG---LLNESCPPLH 949 (2191)
Q Consensus 896 ~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~---ll~~~l~~l~ 949 (2191)
.+. +..+|.||+|||||.| ..|.|++++++.+...+.+ .+...++++.
T Consensus 335 ~p~----s~~~~~Qr~GR~gR~g--~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 385 (400)
T 1s2m_A 335 FPK----TAETYLHRIGRSGRFG--HLGLAINLINWNDRFNLYKIEQELGTEIAAIP 385 (400)
T ss_dssp CCS----SHHHHHHHHCBSSCTT--CCEEEEEEECGGGHHHHHHHHHHHTCCCEECC
T ss_pred CCC----CHHHHHHhcchhcCCC--CCceEEEEeccchHHHHHHHHHHhCCCccccc
Confidence 654 7889999999999999 6899999999977555443 4444444443
No 20
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.7e-38 Score=414.15 Aligned_cols=351 Identities=17% Similarity=0.223 Sum_probs=264.8
Q ss_pred CCcHHHHHHHHHcCCCCCCHHHHHhhhhcccc--cCCeEEEEcCCCCchhHHHHHHHHHHHHhc------CCEEEEEchh
Q 000107 508 WLPSEICSIYKKRGISKLYPWQVECLHVDGVL--QRRNLVYCASTSAGKSFVAEILMLRRLIST------GKMALLVLPY 579 (2191)
Q Consensus 508 ~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il--~gknlIi~APTGSGKTlvael~iL~~ll~~------g~kaL~I~P~ 579 (2191)
.|++.+.+.+.+.||..|+|+|.++++. ++ .++++|++||||+|||++|.+++++.+... +.++|||+|+
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKP--ILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 104 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHH--HHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHH--HHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcch
Confidence 3889999999999999999999999986 77 689999999999999999999999988764 3589999999
Q ss_pred HHHHHHHHHHHHHHhhc----cCCeEEEEeccCCCCC----C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcc
Q 000107 580 VSICAEKAEHLEVLLEP----LGRHVRSYYGNQGGGS----L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDE 650 (2191)
Q Consensus 580 raLA~q~~~~l~~l~~~----lg~~V~~~~G~~~~~~----l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDE 650 (2191)
++||.|+++.+..++.. ....+..++|+..... + ..+++|+||||+++..++.+. ....+..+++|||||
T Consensus 105 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~~~~~lViDE 183 (579)
T 3sqw_A 105 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDE 183 (579)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEET
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc-cccccccCCEEEEEC
Confidence 99999999999987642 2455666777643211 1 225799999999998888763 234678899999999
Q ss_pred cccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccc---c-c
Q 000107 651 LHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAAL---Y-E 725 (2191)
Q Consensus 651 aH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l---~-~ 725 (2191)
+|++.++++...++.++..+...... ....+|+|+||||+++ ...+..++.... + .
T Consensus 184 ah~l~~~gf~~~~~~i~~~l~~~~~~-------------------~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~ 244 (579)
T 3sqw_A 184 ADRLLEIGFRDDLETISGILNEKNSK-------------------SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 244 (579)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSS-------------------CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEE
T ss_pred hHHhhcCCCHHHHHHHHHHhhhhhcc-------------------cccCceEEEEeccCChHHHHHHHHHcCCCceEEEe
Confidence 99999999999999999988765321 2347899999999986 344444432210 0 0
Q ss_pred --cccccc---cceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH---hcCCcEEEEeCchhHHHHHHH
Q 000107 726 --TNFRPV---PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV---QEGHSVLIFCSSRKGCESTAR 797 (2191)
Q Consensus 726 --~~~Rpv---pL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~---~~g~~vLVF~~Sr~~~e~lA~ 797 (2191)
...++. .+...+..... ..... ..+...+...+ ..+.++||||+|++.|+.++.
T Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~--------------~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~ 306 (579)
T 3sqw_A 245 TVDKNEPEAHERIDQSVVISEK----FANSI--------------FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCS 306 (579)
T ss_dssp SSCSSSCSSCTTEEEEEEEESS----TTHHH--------------HHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHH
T ss_pred ecCccccccccccceEEEEecc----hhhhH--------------HHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHH
Confidence 000110 01111110000 00000 01111111112 346799999999999999998
Q ss_pred HHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecc
Q 000107 798 HVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATS 877 (2191)
Q Consensus 798 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATs 877 (2191)
.|.+.+.. ...+..+||+|++.+|..+++.|++|.++|||||+
T Consensus 307 ~L~~~~~~-------------------------------------~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~ 349 (579)
T 3sqw_A 307 ILKNEFKK-------------------------------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 349 (579)
T ss_dssp HHHHHHTT-------------------------------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred HHHHhhcC-------------------------------------CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc
Confidence 88764321 12488999999999999999999999999999999
Q ss_pred cccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhh
Q 000107 878 TLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLL 941 (2191)
Q Consensus 878 tLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll 941 (2191)
++++|||+|++++||++..+. +...|+||+|||||.| ..|.|++++.+.+...+..+.
T Consensus 350 ~~~~GiDip~v~~VI~~~~p~----s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 350 VGARGMDFPNVHEVLQIGVPS----ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp GGTSSCCCTTCCEEEEESCCS----STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred hhhcCCCcccCCEEEEcCCCC----CHHHhhhhccccccCC--CCceEEEEEcccHHHHHHHHH
Confidence 999999999999999877665 8899999999999999 789999999998876665554
No 21
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=9.7e-38 Score=393.58 Aligned_cols=334 Identities=18% Similarity=0.191 Sum_probs=244.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccC--CeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQR--RNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICA 584 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g--knlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~ 584 (2191)
|++.+.+.+.+.||..|+|+|.++++. ++.+ +++++++|||+|||++|.++++..+.. .++++||++|+++|+.
T Consensus 32 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 109 (412)
T 3fht_A 32 LKPQLLQGVYAMGFNRPSKIQENALPL--MLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 109 (412)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHH
Confidence 789999999999999999999999987 7776 999999999999999999999987764 3448999999999999
Q ss_pred HHHHHHHHHhhcc-CCeEEEEeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc-cchhH
Q 000107 585 EKAEHLEVLLEPL-GRHVRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD-QNRGY 661 (2191)
Q Consensus 585 q~~~~l~~l~~~l-g~~V~~~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d-~~RG~ 661 (2191)
|+++.++++.... +..+....|+.... ......+|+|+||+++..++.+. ....+.++++|||||+|++.+ .++..
T Consensus 110 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~ 188 (412)
T 3fht_A 110 QTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIATQGHQD 188 (412)
T ss_dssp HHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-CSSCGGGCCEEEEETHHHHHSTTTTHH
T ss_pred HHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc-CCcChhhCcEEEEeCHHHHhhcCCcHH
Confidence 9999999887653 56777766655332 22345799999999987776431 233568899999999999876 33443
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH-HHhhcccc-ccc---cccccceE
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA-DWLQAALY-ETN---FRPVPLEE 735 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la-~wL~a~l~-~~~---~RpvpL~e 735 (2191)
.+..++..+ +.+.|+|+||||+++ ...+. .++....+ ... ...-.+..
T Consensus 189 ~~~~~~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T 3fht_A 189 QSIRIQRML--------------------------PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ 242 (412)
T ss_dssp HHHHHHHTS--------------------------CTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEE
T ss_pred HHHHHHhhC--------------------------CCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceE
Confidence 333332221 356899999999985 22333 22222111 000 01111111
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCc
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~ 815 (2191)
++.... .... ....+..++.. ..++++||||++++.|+.++..|.+.
T Consensus 243 ~~~~~~----~~~~--------------~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~------------- 289 (412)
T 3fht_A 243 YYVLCS----SRDE--------------KFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKE------------- 289 (412)
T ss_dssp EEEECS----SHHH--------------HHHHHHHHHHH--HSSSEEEEECSSHHHHHHHHHHHHHT-------------
T ss_pred EEEEcC----ChHH--------------HHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHhC-------------
Confidence 111000 0000 01122233322 24579999999999999998887541
Q ss_pred hhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC
Q 000107 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP 895 (2191)
Q Consensus 816 ~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p 895 (2191)
..++.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+++
T Consensus 290 ---------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 290 ---------------------------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 342 (412)
T ss_dssp ---------------------------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESS
T ss_pred ---------------------------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEEC
Confidence 23488999999999999999999999999999999999999999999999876
Q ss_pred CCCC--cccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 896 RIGR--DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 896 ~~g~--~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
.+.. .+.+..+|.||+|||||.| ..|.|++++++.+
T Consensus 343 ~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~ 380 (412)
T 3fht_A 343 LPVDKDGNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKH 380 (412)
T ss_dssp CCBCSSSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHH
T ss_pred CCCCCCCCcchheeecccCcccCCC--CCceEEEEEcChh
Confidence 6532 1257789999999999999 7899999998754
No 22
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.7e-38 Score=424.67 Aligned_cols=431 Identities=19% Similarity=0.205 Sum_probs=304.2
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~ 586 (2191)
+++.+.+.+..+| ..|.+.|.++|.. .+..+++++++||||||||++..+.++...... +.+++|++|+++||.|+
T Consensus 79 l~~~~~~~l~~r~-~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~ 156 (773)
T 2xau_A 79 FTPKYVDILKIRR-ELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSV 156 (773)
T ss_dssp CCHHHHHHHHHHT-TSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHH
T ss_pred CCHHHHHHHHHhh-cCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHH
Confidence 6788999999888 6888999999975 456788999999999999996555444433333 67899999999999999
Q ss_pred HHHHHHHhh-ccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHH
Q 000107 587 AEHLEVLLE-PLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLEL 665 (2191)
Q Consensus 587 ~~~l~~l~~-~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~ 665 (2191)
++++...+. ..+..++.. .........+++|+|+||+++...+. ....+.++++|||||+|. |+...+.
T Consensus 157 ~~~l~~~~~~~v~~~vG~~--i~~~~~~~~~~~I~v~T~G~l~r~l~---~~~~l~~~~~lIlDEah~-----R~ld~d~ 226 (773)
T 2xau_A 157 AQRVAEEMDVKLGEEVGYS--IRFENKTSNKTILKYMTDGMLLREAM---EDHDLSRYSCIILDEAHE-----RTLATDI 226 (773)
T ss_dssp HHHHHHHTTCCBTTTEEEE--ETTEEECCTTCSEEEEEHHHHHHHHH---HSTTCTTEEEEEECSGGG-----CCHHHHH
T ss_pred HHHHHHHhCCchhheecce--eccccccCCCCCEEEECHHHHHHHHh---hCccccCCCEEEecCccc-----cccchHH
Confidence 987765442 233333311 11112234568999999999765543 456799999999999996 3333333
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc-cccccccccccceEEEEeccccc
Q 000107 666 LLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA-ALYETNFRPVPLEEYIKVGNAIY 744 (2191)
Q Consensus 666 lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a-~l~~~~~RpvpL~e~i~~~~~~~ 744 (2191)
++..++.+... .++.|+|+||||+ +.+.+++|++. .++....+..|++.++.....
T Consensus 227 ~~~~l~~l~~~--------------------~~~~~iIl~SAT~-~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~-- 283 (773)
T 2xau_A 227 LMGLLKQVVKR--------------------RPDLKIIIMSATL-DAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQ-- 283 (773)
T ss_dssp HHHHHHHHHHH--------------------CTTCEEEEEESCS-CCHHHHHHTTSCCEEECCCCCCCEEEECCSSCC--
T ss_pred HHHHHHHHHHh--------------------CCCceEEEEeccc-cHHHHHHHhcCCCcccccCcccceEEEEecCCc--
Confidence 34444333221 2468999999998 67899999974 445556667776654331110
Q ss_pred cchhhHHHHHHHhhccCCCChhHHHHHHHHHH--hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHH
Q 000107 745 SKKMDVVRTILTAANLGGKDPDHIVELCDEVV--QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITS 822 (2191)
Q Consensus 745 ~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~--~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~ 822 (2191)
... .+.....+.... ..++++||||++++.|+.++..|.+.+....
T Consensus 284 ---~~~--------------~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~--------------- 331 (773)
T 2xau_A 284 ---RDY--------------LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLV--------------- 331 (773)
T ss_dssp ---SCH--------------HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHH---------------
T ss_pred ---hhH--------------HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhc---------------
Confidence 000 111222222222 2468999999999999999999876432110
Q ss_pred HHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhh-----cCCceEEEecccccccCCCCCceEEeecCCC
Q 000107 823 AIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYR-----KGLVRVLTATSTLAAGVNLPARRVIFRQPRI 897 (2191)
Q Consensus 823 ~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr-----~G~ikVLVATstLa~GVNLPav~VVI~~p~~ 897 (2191)
.. .......|.+|||+|++++|..+++.|+ +|.++|||||+++++|||+|++++||+++..
T Consensus 332 --~~------------~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~ 397 (773)
T 2xau_A 332 --RE------------EGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFS 397 (773)
T ss_dssp --HH------------HCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEE
T ss_pred --cc------------ccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCc
Confidence 00 0011234999999999999999999999 9999999999999999999999999996541
Q ss_pred ---------CC-----cccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccCCCCcccccccccchhhHHH
Q 000107 898 ---------GR-----DFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNESCPPLHSCLSEDKNGMTHAI 963 (2191)
Q Consensus 898 ---------g~-----~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~L~~~~~~l~~~i 963 (2191)
|. .+++..+|.||+|||||.+ .|.||+++++.++.. .+.....|.+.. ..+...+
T Consensus 398 k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~---~G~~~~l~~~~~~~~--~l~~~~~pEi~r------~~L~~~~ 466 (773)
T 2xau_A 398 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR---PGKCFRLYTEEAFQK--ELIEQSYPEILR------SNLSSTV 466 (773)
T ss_dssp EEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSS---SEEEEESSCHHHHHH--TSCSSCCCGGGG------SCCHHHH
T ss_pred cceeeccccCccccccccCCHHHHHhhccccCCCC---CCEEEEEecHHHhcc--cccccCCCcccc------CcHHHHH
Confidence 21 2678999999999999995 899999998876532 233444444422 2455678
Q ss_pred HHHHhcccccCHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHH
Q 000107 964 LEVVAGGIVQTAEDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLI 1043 (2191)
Q Consensus 964 Leiia~gi~~t~~di~~~l~~tll~~~~~~~~~~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~ 1043 (2191)
|.+.+.|+- ++ ..+.|+.++. .+.+..|++.|...|+|+. + -.+|++|+.++.+|++|..|++
T Consensus 467 L~l~~~gi~----~~---~~f~~~~~p~-----~~~i~~a~~~L~~lgald~--~---~~lT~lG~~~a~~pl~p~~~~~ 529 (773)
T 2xau_A 467 LELKKLGID----DL---VHFDFMDPPA-----PETMMRALEELNYLACLDD--E---GNLTPLGRLASQFPLDPMLAVM 529 (773)
T ss_dssp HHHHHTTCC----CG---GGCCCSSCCC-----HHHHHHHHHHHHHTTSBCT--T---SCBCHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHcCCC----Ch---hhccccCCCc-----HHHHHHHHHHHHHcCCccc--C---CCcChhhhhhccccCCHHHHHH
Confidence 888887742 22 2234554443 3677889999999999952 2 2599999999999999999999
Q ss_pred HHHHH
Q 000107 1044 VLDDL 1048 (2191)
Q Consensus 1044 l~~~L 1048 (2191)
++...
T Consensus 530 l~~~~ 534 (773)
T 2xau_A 530 LIGSF 534 (773)
T ss_dssp HHHGG
T ss_pred HHhhc
Confidence 88754
No 23
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=7e-38 Score=395.72 Aligned_cols=342 Identities=19% Similarity=0.280 Sum_probs=259.0
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+|+|.++++. ++.|+++++++|||+|||++|.+++++.+.. .+.++||++|+++|+.|+
T Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~ai~~--i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~ 121 (410)
T 2j0s_A 44 LREDLLRGIYAYGFEKPSAIQQRAIKQ--IIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI 121 (410)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHH
Confidence 778999999999999999999999987 8899999999999999999999999987642 467999999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
++.+..+....++.+..++|+.... .+..+.+|+|+||+++..++++ ....+..+++|||||+|.+.+.++...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~--~~~~~~~~~~vViDEah~~~~~~~~~~ 199 (410)
T 2j0s_A 122 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--RSLRTRAIKMLVLDEADEMLNKGFKEQ 199 (410)
T ss_dssp HHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHTSTTTHHH
T ss_pred HHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh--CCccHhheeEEEEccHHHHHhhhhHHH
Confidence 9999998888889998888875421 1223578999999999888875 345678899999999999988776655
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccc-----c---ccccccce
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYE-----T---NFRPVPLE 734 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~-----~---~~RpvpL~ 734 (2191)
+..++..+ ++..|+|+||||+++ .+.+++...+.. . ...+..+.
T Consensus 200 ~~~i~~~~--------------------------~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (410)
T 2j0s_A 200 IYDVYRYL--------------------------PPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELTLEGIK 251 (410)
T ss_dssp HHHHHTTS--------------------------CTTCEEEEEESCCCH--HHHTTGGGTCSSCEEECCCGGGCSCTTEE
T ss_pred HHHHHHhC--------------------------ccCceEEEEEcCCCH--HHHHHHHHHcCCCEEEEecCccccCCCce
Confidence 54443221 356899999999974 333333221110 0 00111111
Q ss_pred EEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCC
Q 000107 735 EYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814 (2191)
Q Consensus 735 e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~ 814 (2191)
.++... ... ....+.+..++... ..+++||||++++.++.++..|.+.
T Consensus 252 ~~~~~~----~~~--------------~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~------------ 299 (410)
T 2j0s_A 252 QFFVAV----ERE--------------EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREA------------ 299 (410)
T ss_dssp EEEEEE----SST--------------THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHT------------
T ss_pred EEEEEe----CcH--------------HhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhC------------
Confidence 111100 000 00112333333332 3469999999999999888877541
Q ss_pred chhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeec
Q 000107 815 SEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQ 894 (2191)
Q Consensus 815 ~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~ 894 (2191)
...+..+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||++
T Consensus 300 ----------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~ 351 (410)
T 2j0s_A 300 ----------------------------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 351 (410)
T ss_dssp ----------------------------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEES
T ss_pred ----------------------------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEE
Confidence 1248889999999999999999999999999999999999999999999987
Q ss_pred CCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH---HHhhhccCCCCc
Q 000107 895 PRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK---IMGLLNESCPPL 948 (2191)
Q Consensus 895 p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~---~~~ll~~~l~~l 948 (2191)
..+. +...|.||+|||||.| ..|.|++++++.+... +.+++...++++
T Consensus 352 ~~p~----s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (410)
T 2j0s_A 352 DLPN----NRELYIHRIGRSGRYG--RKGVAINFVKNDDIRILRDIEQYYSTQIDEM 402 (410)
T ss_dssp SCCS----SHHHHHHHHTTSSGGG--CCEEEEEEEEGGGHHHHHHHHHHTTCCCEEC
T ss_pred CCCC----CHHHHHHhcccccCCC--CceEEEEEecHHHHHHHHHHHHHhCCCceec
Confidence 7654 7889999999999998 7899999999877554 444555555433
No 24
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8e-38 Score=387.52 Aligned_cols=341 Identities=19% Similarity=0.276 Sum_probs=257.6
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccC-CeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQR-RNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g-knlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+++.||.+|+|+|.++++. ++.+ +++++++|||+|||++|.++++..+.. .+.++||++|+++|+.|+
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 90 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPL--FLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQV 90 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHH
Confidence 779999999999999999999999986 7776 799999999999999999999877654 467899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
++.+..++...++.+..++|+..... ...+.+|+|+||+++..++.+ ....+.++++||+||+|.+.+.++...+
T Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~~~~~~ 168 (367)
T 1hv8_A 91 ADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNMGFIKDV 168 (367)
T ss_dssp HHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTTTTHHHH
T ss_pred HHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHc--CCcccccCCEEEEeCchHhhhhchHHHH
Confidence 99999998888888888887653211 112578999999998877764 3446789999999999999887665555
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCH--HHHHHHhhccccccccccccceEEEEecc
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNV--AAVADWLQAALYETNFRPVPLEEYIKVGN 741 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~--~~la~wL~a~l~~~~~RpvpL~e~i~~~~ 741 (2191)
..++..+ ....|+|+||||+++. ..+..+++...+........+...+...
T Consensus 169 ~~~~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 221 (367)
T 1hv8_A 169 EKILNAC--------------------------NKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSYVEV- 221 (367)
T ss_dssp HHHHHTS--------------------------CSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEEEEC-
T ss_pred HHHHHhC--------------------------CCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEEEEe-
Confidence 5444322 3568999999998752 2333444432221111111222211100
Q ss_pred ccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhH
Q 000107 742 AIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDIT 821 (2191)
Q Consensus 742 ~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~ 821 (2191)
...+.+..++..+...+.++||||++++.++.++..|.+.
T Consensus 222 ---------------------~~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~------------------- 261 (367)
T 1hv8_A 222 ---------------------NENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDI------------------- 261 (367)
T ss_dssp ---------------------CGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHT-------------------
T ss_pred ---------------------ChHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhc-------------------
Confidence 0111122222222245689999999999999888877541
Q ss_pred HHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcc
Q 000107 822 SAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDF 901 (2191)
Q Consensus 822 ~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~ 901 (2191)
..++..+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||++..+.
T Consensus 262 ---------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~--- 317 (367)
T 1hv8_A 262 ---------------------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQ--- 317 (367)
T ss_dssp ---------------------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCS---
T ss_pred ---------------------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCC---
Confidence 23488999999999999999999999999999999999999999999999876644
Q ss_pred cCcccccccccccCCCCCCCceEEEEEeChhhHHHHH---hhhccCCCC
Q 000107 902 IDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM---GLLNESCPP 947 (2191)
Q Consensus 902 is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~---~ll~~~l~~ 947 (2191)
+..+|.||+|||||.| ..|.|++++++.+...+. +.+...+++
T Consensus 318 -s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 318 -NPESYMHRIGRTGRAG--KKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp -CHHHHHHHSTTTCCSS--SCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred -CHHHhhhcccccccCC--CccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 8889999999999999 689999999987755443 444444443
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=415.89 Aligned_cols=342 Identities=18% Similarity=0.194 Sum_probs=139.1
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccC--CeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQR--RNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICA 584 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g--knlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~ 584 (2191)
|++.+.+.+.++||..|+|+|.++++. ++.+ +++|++||||||||++|+++++..+... ++++|||+|+++||.
T Consensus 99 l~~~l~~~l~~~g~~~p~~~Q~~ai~~--il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 176 (479)
T 3fmp_B 99 LKPQLLQGVYAMGFNRPSKIQENALPL--MLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 176 (479)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHH
Confidence 789999999999999999999999987 7765 9999999999999999999999877643 338999999999999
Q ss_pred HHHHHHHHHhhcc-CCeEEEEeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc-chhH
Q 000107 585 EKAEHLEVLLEPL-GRHVRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-NRGY 661 (2191)
Q Consensus 585 q~~~~l~~l~~~l-g~~V~~~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-~RG~ 661 (2191)
|+++.++.+.... ++.+....++.... ......+|+|+||+++..++.+. ....+.++++|||||+|.+.+. ++..
T Consensus 177 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~~iViDEah~~~~~~~~~~ 255 (479)
T 3fmp_B 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIATQGHQD 255 (479)
T ss_dssp HHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-CCCCGGGCCEEEECCHHHHHTSTTHHH
T ss_pred HHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhc-CCcCcccCCEEEEECHHHHhhcCCcHH
Confidence 9999998876643 56666666654322 22345789999999988777541 2345689999999999998863 3332
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhccccccccccccceEEEEec
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALYETNFRPVPLEEYIKVG 740 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~~~~~RpvpL~e~i~~~ 740 (2191)
.+..++ .. .+.+.|+|+||||+++ ...++..+. +.|....+...
T Consensus 256 ~~~~i~----~~----------------------~~~~~~~i~~SAT~~~~~~~~~~~~~---------~~~~~i~~~~~ 300 (479)
T 3fmp_B 256 QSIRIQ----RM----------------------LPRNCQMLLFSATFEDSVWKFAQKVV---------PDPNVIKLKRE 300 (479)
T ss_dssp HHHHHH----TT----------------------SCTTSEEEEEESCCCHHHHHHHHHHS---------SSEEEEEEC--
T ss_pred HHHHHH----hh----------------------CCccceEEEEeCCCCHHHHHHHHHHc---------CCCeEEecccc
Confidence 222221 11 1356899999999985 223332221 11111111100
Q ss_pred cccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhh
Q 000107 741 NAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDI 820 (2191)
Q Consensus 741 ~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~ 820 (2191)
... ...+................+..++... .++++||||++++.|+.++..|...
T Consensus 301 ~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~------------------ 356 (479)
T 3fmp_B 301 EET----LDTIKQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKE------------------ 356 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccC----cCCceEEEEEeCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhC------------------
Confidence 000 0000000000000011222333333322 3478999999999999888777431
Q ss_pred HHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCC--
Q 000107 821 TSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIG-- 898 (2191)
Q Consensus 821 ~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g-- 898 (2191)
..++.+|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.+.
T Consensus 357 ----------------------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~ 414 (479)
T 3fmp_B 357 ----------------------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK 414 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCC
Confidence 23488899999999999999999999999999999999999999999999876542
Q ss_pred CcccCcccccccccccCCCCCCCceEEEEEeChhhHHH
Q 000107 899 RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 899 ~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~ 936 (2191)
..+.+..+|.||+|||||.| ..|.|++++++.+...
T Consensus 415 ~~~~s~~~~~Qr~GRagR~g--~~G~~i~~~~~~~~~~ 450 (479)
T 3fmp_B 415 DGNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKHSMN 450 (479)
T ss_dssp --------------------------------------
T ss_pred ccCCCHHHHHHHhcccccCC--CCceEEEEEcCcchHH
Confidence 22347789999999999999 7899999998765333
No 26
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=399.37 Aligned_cols=344 Identities=19% Similarity=0.250 Sum_probs=244.0
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
+++.+.+.+.+.||..|+++|.++++. ++.|+++++++|||+|||++|.+++++.+.. .+.++||++|+++|+.|+
T Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 124 (414)
T 3eiq_A 47 LSESLLRGIYAYGFEKPSAIQQRAILP--CIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 124 (414)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHhHH--HhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHH
Confidence 778999999999999999999999987 8899999999999999999999999987764 467899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC-----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS-----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~-----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
++.++.++...+..+...+|+..... ...+++|+|+||+++..++.+ ....+..+++|||||+|++.+.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~~vViDEah~~~~~~~~~ 202 (414)
T 3eiq_A 125 QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEMLSRGFKD 202 (414)
T ss_dssp HHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH--TSSCSTTCCEEEECSHHHHHHTTTHH
T ss_pred HHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccCcEEEEECHHHhhccCcHH
Confidence 99999998888888888877653211 225679999999999888765 44567889999999999998877766
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH-Hhhcccc-c---cccccccceE
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD-WLQAALY-E---TNFRPVPLEE 735 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~-wL~a~l~-~---~~~RpvpL~e 735 (2191)
.+..++.++ .++.|+|+||||+++ ...+.. ++..... . ....+..+..
T Consensus 203 ~~~~~~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (414)
T 3eiq_A 203 QIYDIFQKL--------------------------NSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQ 256 (414)
T ss_dssp HHHHHHTTS--------------------------CTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCE
T ss_pred HHHHHHHhC--------------------------CCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceE
Confidence 665554333 357899999999874 222222 2211100 0 0001111111
Q ss_pred EEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCc
Q 000107 736 YIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDS 815 (2191)
Q Consensus 736 ~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~ 815 (2191)
++.... . .....+.+..++.. ..++++||||++++.|+.++..|.+.
T Consensus 257 ~~~~~~----~--------------~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~------------- 303 (414)
T 3eiq_A 257 FYINVE----R--------------EEWKLDTLCDLYET--LTITQAVIFINTRRKVDWLTEKMHAR------------- 303 (414)
T ss_dssp EEEECS----S--------------STTHHHHHHHHHHS--SCCSSCEEECSCHHHHHHHHHHHHTT-------------
T ss_pred EEEEeC----h--------------HHhHHHHHHHHHHh--CCCCcEEEEeCCHHHHHHHHHHHHhc-------------
Confidence 111000 0 00011122222221 13479999999999999888777431
Q ss_pred hhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC
Q 000107 816 EFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP 895 (2191)
Q Consensus 816 ~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p 895 (2191)
..++.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++.
T Consensus 304 ---------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~ 356 (414)
T 3eiq_A 304 ---------------------------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 356 (414)
T ss_dssp ---------------------------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESS
T ss_pred ---------------------------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeC
Confidence 23488999999999999999999999999999999999999999999999876
Q ss_pred CCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH---HhhhccCCCCc
Q 000107 896 RIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI---MGLLNESCPPL 948 (2191)
Q Consensus 896 ~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~---~~ll~~~l~~l 948 (2191)
.+. +..+|.||+|||||.| ..|.|++++++.+...+ .++++..++.+
T Consensus 357 ~p~----s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (414)
T 3eiq_A 357 LPT----NRENYIHRIGRGGRFG--RKGVAINMVTEEDKRTLRDIETFYNTSIEEM 406 (414)
T ss_dssp CCS----STHHHHHHSCCC---------CEEEEECSTHHHHHHHHHHHTTCCCEEC
T ss_pred CCC----CHHHhhhhcCcccCCC--CCceEEEEEcHHHHHHHHHHHHHHcCCcccc
Confidence 654 8889999999999998 68999999998765544 44555554433
No 27
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3e-37 Score=386.65 Aligned_cols=329 Identities=19% Similarity=0.253 Sum_probs=247.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+|+|.++++. ++.++++++++|||+|||++|.++++..+.. .+.++||++|+++|+.|+
T Consensus 15 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~ 92 (391)
T 1xti_A 15 LKPELLRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 92 (391)
T ss_dssp CCHHHHHHHHHHSCCSCCHHHHHHHHH--HTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHH
Confidence 778999999999999999999999987 8899999999999999999999999987653 355899999999999999
Q ss_pred HHHHHHHhhcc-CCeEEEEeccCCCCC----C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc-ch
Q 000107 587 AEHLEVLLEPL-GRHVRSYYGNQGGGS----L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-NR 659 (2191)
Q Consensus 587 ~~~l~~l~~~l-g~~V~~~~G~~~~~~----l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-~R 659 (2191)
++.+.++.... ++++..++|+..... + ...++|+|+||+++..++.+ ....+.++++|||||+|.+.++ ++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~vViDEaH~~~~~~~~ 170 (391)
T 1xti_A 93 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQLDM 170 (391)
T ss_dssp HHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCSEEEECSHHHHTSSHHH
T ss_pred HHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccccccCEEEEeCHHHHhhccch
Confidence 99999887765 788888888754211 1 12368999999999887765 3446789999999999999764 23
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHH-HHHHhhccc--c-cccc--cccc
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAA-VADWLQAAL--Y-ETNF--RPVP 732 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~-la~wL~a~l--~-~~~~--Rpvp 732 (2191)
...+..++.. .+...|+|+||||+++ ... +..++.... + .... ....
T Consensus 171 ~~~~~~~~~~--------------------------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (391)
T 1xti_A 171 RRDVQEIFRM--------------------------TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHG 224 (391)
T ss_dssp HHHHHHHHHT--------------------------SCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTT
T ss_pred HHHHHHHHhh--------------------------CCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCccc
Confidence 3333322211 1356899999999986 333 334443221 1 0110 1111
Q ss_pred ceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCC
Q 000107 733 LEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812 (2191)
Q Consensus 733 L~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~ 812 (2191)
+..++.... .. .....+..++... .++++||||++++.|+.++..|...
T Consensus 225 ~~~~~~~~~-----~~--------------~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~---------- 273 (391)
T 1xti_A 225 LQQYYVKLK-----DN--------------EKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQ---------- 273 (391)
T ss_dssp CEEEEEECC-----GG--------------GHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHT----------
T ss_pred ceEEEEEcC-----ch--------------hHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhC----------
Confidence 122111100 00 0112233333322 5689999999999999988877541
Q ss_pred CCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEe
Q 000107 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF 892 (2191)
Q Consensus 813 ~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI 892 (2191)
...+..+||+|+.++|..+++.|++|.++|||||+++++|+|+|++++||
T Consensus 274 ------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi 323 (391)
T 1xti_A 274 ------------------------------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF 323 (391)
T ss_dssp ------------------------------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEE
T ss_pred ------------------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEE
Confidence 12388899999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhH
Q 000107 893 RQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEV 934 (2191)
Q Consensus 893 ~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~ 934 (2191)
++..+. +..+|.||+|||||.| ..|.|++++.+.+.
T Consensus 324 ~~~~p~----s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 324 NYDMPE----DSDTYLHRVARAGRFG--TKGLAITFVSDEND 359 (391)
T ss_dssp ESSCCS----SHHHHHHHHCBCSSSC--CCCEEEEEECSHHH
T ss_pred EeCCCC----CHHHHHHhcccccCCC--CceEEEEEEcccch
Confidence 876654 8899999999999999 78999999987643
No 28
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.8e-37 Score=404.30 Aligned_cols=334 Identities=19% Similarity=0.293 Sum_probs=255.4
Q ss_pred CcHHHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHH
Q 000107 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA 587 (2191)
Q Consensus 509 Lp~~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~ 587 (2191)
+++.+.+.|++ +||..|+|+|.++|+. ++.|+++++++|||+|||++|.+|++. .++++|||+|+++|+.|++
T Consensus 28 l~~~l~~~L~~~fg~~~~rp~Q~~~i~~--il~g~d~lv~~pTGsGKTl~~~lpal~----~~g~~lVisP~~~L~~q~~ 101 (591)
T 2v1x_A 28 WSGKVKDILQNVFKLEKFRPLQLETINV--TMAGKEVFLVMPTGGGKSLCYQLPALC----SDGFTLVICPLISLMEDQL 101 (591)
T ss_dssp THHHHHHHHHHTSCCCSCCTTHHHHHHH--HHTTCCEEEECCTTSCTTHHHHHHHHT----SSSEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHH--HHcCCCEEEEECCCChHHHHHHHHHHH----cCCcEEEEeCHHHHHHHHH
Confidence 67889999988 7999999999999987 899999999999999999999999875 4679999999999999999
Q ss_pred HHHHHHhhccCCeEEEEeccCCCCC----------CCCCCceEEEchHHHH---HHHHHhhhcCCCCccceEEEcccccc
Q 000107 588 EHLEVLLEPLGRHVRSYYGNQGGGS----------LPKDTSVAVCTIEKAN---SLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 588 ~~l~~l~~~lg~~V~~~~G~~~~~~----------l~~~~~IiV~TpEkl~---~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
+.+..+ |+.+..+.|+..... .....+|+|+|||++. .+++.+.....+.++++|||||+|++
T Consensus 102 ~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~i 177 (591)
T 2v1x_A 102 MVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCC 177 (591)
T ss_dssp HHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGG
T ss_pred HHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccc
Confidence 988775 788888877654321 2456899999999884 34444333335678999999999999
Q ss_pred cccc--hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhcc---ccccc
Q 000107 655 ADQN--RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQAA---LYETN 727 (2191)
Q Consensus 655 ~d~~--RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a~---l~~~~ 727 (2191)
.+++ +.+.+.. +..++.. .+++|+|+||||+++ ..++..|++.. .+...
T Consensus 178 s~~g~dfr~~~~~-l~~l~~~-----------------------~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~ 233 (591)
T 2v1x_A 178 SQWGHDFRPDYKA-LGILKRQ-----------------------FPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS 233 (591)
T ss_dssp STTCTTCCGGGGG-GGHHHHH-----------------------CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC
T ss_pred cccccccHHHHHH-HHHHHHh-----------------------CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC
Confidence 9876 4444433 2222222 246899999999876 35677777643 22222
Q ss_pred cccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHh---cCCcEEEEeCchhHHHHHHHHHHHHHh
Q 000107 728 FRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQ---EGHSVLIFCSSRKGCESTARHVSKFLK 804 (2191)
Q Consensus 728 ~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~---~g~~vLVF~~Sr~~~e~lA~~L~~~l~ 804 (2191)
+....+...+.... .........+.+.+. .+.++||||+|++.|+.++..|...
T Consensus 234 ~~r~nl~~~v~~~~---------------------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~-- 290 (591)
T 2v1x_A 234 FNRPNLYYEVRQKP---------------------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL-- 290 (591)
T ss_dssp CCCTTEEEEEEECC---------------------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT--
T ss_pred CCCcccEEEEEeCC---------------------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC--
Confidence 22222221111100 001111112222222 4689999999999999999888541
Q ss_pred hcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCC
Q 000107 805 KFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVN 884 (2191)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVN 884 (2191)
+..+.++||+|+.++|..+++.|++|.++|||||+++++|||
T Consensus 291 --------------------------------------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID 332 (591)
T 2v1x_A 291 --------------------------------------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGID 332 (591)
T ss_dssp --------------------------------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCC
T ss_pred --------------------------------------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCC
Confidence 234899999999999999999999999999999999999999
Q ss_pred CCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhcc
Q 000107 885 LPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNE 943 (2191)
Q Consensus 885 LPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~ 943 (2191)
+|++++||++..+. +...|.||+|||||.| ..|.|++++.+.+...+..++..
T Consensus 333 ~p~V~~VI~~~~p~----s~~~y~Qr~GRaGR~G--~~g~~i~l~~~~D~~~~~~~~~~ 385 (591)
T 2v1x_A 333 KPDVRFVIHHSMSK----SMENYYQESGRAGRDD--MKADCILYYGFGDIFRISSMVVM 385 (591)
T ss_dssp CSCEEEEEESSCCS----SHHHHHHHHTTSCTTS--SCEEEEEEECHHHHHHHHHHTTT
T ss_pred cccccEEEEeCCCC----CHHHHHHHhccCCcCC--CCceEEEEEChHHHHHHHHHHhh
Confidence 99999999987766 8899999999999999 78999999999998887777754
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.6e-37 Score=377.47 Aligned_cols=322 Identities=20% Similarity=0.242 Sum_probs=245.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
|++.+.+.++++||..|+|+|.++++. +++++++++++|||+|||++|.+++++. +.++||++|+++|+.|+++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~--i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPL--MLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHH
Confidence 578899999999999999999999987 8899999999999999999999998763 7899999999999999999
Q ss_pred HHHHHhhccCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHH
Q 000107 589 HLEVLLEPLGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLEL 665 (2191)
Q Consensus 589 ~l~~l~~~lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~ 665 (2191)
.+.+++...+.++..++|+..... ...+.+|+|+||+++..++.+ ....+.++++||+||+|.+.++++...+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~ 152 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSK--GVIDLSSFEIVIIDEADLMFEMGFIDDIKI 152 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHT--TSCCGGGCSEEEEESHHHHHHTTCHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHc--CCcchhhCcEEEEEChHHhhccccHHHHHH
Confidence 999988888889988888654211 112478999999998877664 334578899999999999988777766666
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCH--HHHHHHhhcccc-ccccccccceEEEEeccc
Q 000107 666 LLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNV--AAVADWLQAALY-ETNFRPVPLEEYIKVGNA 742 (2191)
Q Consensus 666 lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~--~~la~wL~a~l~-~~~~RpvpL~e~i~~~~~ 742 (2191)
++..+ ....++++||||+++. ..+..|+..... ........+...+....
T Consensus 153 ~~~~~--------------------------~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 205 (337)
T 2z0m_A 153 ILAQT--------------------------SNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVK- 205 (337)
T ss_dssp HHHHC--------------------------TTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECS-
T ss_pred HHhhC--------------------------CcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeC-
Confidence 65443 2457899999999752 234444432211 11111111111111000
Q ss_pred cccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHH
Q 000107 743 IYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITS 822 (2191)
Q Consensus 743 ~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~ 822 (2191)
.+.......+. ...++++||||++++.++.++..|.
T Consensus 206 --------------------~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~---------------------- 241 (337)
T 2z0m_A 206 --------------------DDWRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD---------------------- 241 (337)
T ss_dssp --------------------SSSHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----------------------
T ss_pred --------------------hHHHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----------------------
Confidence 00111111111 1346899999999999887654331
Q ss_pred HHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCccc
Q 000107 823 AIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFI 902 (2191)
Q Consensus 823 ~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~i 902 (2191)
.+..+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||++..+.
T Consensus 242 ----------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~---- 295 (337)
T 2z0m_A 242 ----------------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ---- 295 (337)
T ss_dssp ----------------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS----
T ss_pred ----------------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC----
Confidence 277899999999999999999999999999999999999999999999876654
Q ss_pred CcccccccccccCCCCCCCceEEEEEeChhhHHHHH
Q 000107 903 DGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM 938 (2191)
Q Consensus 903 s~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~ 938 (2191)
+..+|.||+|||||.| ..|.|++++. .+...+.
T Consensus 296 s~~~~~Q~~GR~gR~g--~~g~~~~~~~-~~~~~~~ 328 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRMG--RKGEAITFIL-NEYWLEK 328 (337)
T ss_dssp SHHHHHHHHTTBCGGG--CCEEEEEEES-SCHHHHH
T ss_pred CHHHhhHhcCccccCC--CCceEEEEEe-CcHHHHH
Confidence 8889999999999999 6899999998 5544433
No 30
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.9e-38 Score=397.61 Aligned_cols=348 Identities=18% Similarity=0.253 Sum_probs=149.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+...||.+|+|+|.++++. ++.++++++++|||+|||++|.++++..+.. .++++||++|+++|+.|+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~ 105 (394)
T 1fuu_A 28 LDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 105 (394)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHH
Confidence 779999999999999999999999987 8899999999999999999999999987654 466999999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
++.+.+++...++++..++|+..... ...+.+|+|+||+++...+.+ ....+.++++||+||+|++.+.++...+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~vIiDEah~~~~~~~~~~~ 183 (394)
T 1fuu_A 106 QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSGFKEQI 183 (394)
T ss_dssp HHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred HHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEEChHHhhCCCcHHHH
Confidence 99999998888899998888754211 112578999999998877765 3456788999999999999887777666
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCH--HHHHHHhhccccccccccccceEEEEecc
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNV--AAVADWLQAALYETNFRPVPLEEYIKVGN 741 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~--~~la~wL~a~l~~~~~RpvpL~e~i~~~~ 741 (2191)
..++..+ ++..|+|+||||+++. +.+..|+... ....+....
T Consensus 184 ~~~~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~----------~~~~~~~~~ 227 (394)
T 1fuu_A 184 YQIFTLL--------------------------PPTTQVVLLSATMPNDVLEVTTKFMRNP----------VRILVKKDE 227 (394)
T ss_dssp HHHHHHS--------------------------CTTCEEEEECSSCCHHHHHHHHHHCCSC----------EEEEECC--
T ss_pred HHHHHhC--------------------------CCCceEEEEEEecCHHHHHHHHHhcCCC----------eEEEecCcc
Confidence 6655443 3568999999999851 2223333221 111110000
Q ss_pred ccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhH
Q 000107 742 AIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDIT 821 (2191)
Q Consensus 742 ~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~ 821 (2191)
.... .+................+..++... .++++||||++++.++.++..|.+.
T Consensus 228 ~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~------------------- 282 (394)
T 1fuu_A 228 LTLE----GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRND------------------- 282 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCC----CceEEEEEcCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHc-------------------
Confidence 0000 00000000000001112223333221 3579999999999998888776431
Q ss_pred HHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcc
Q 000107 822 SAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDF 901 (2191)
Q Consensus 822 ~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~ 901 (2191)
...+..+||+|+.++|..+++.|++|.++|||||+++++|+|+|++++||++..+.
T Consensus 283 ---------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~--- 338 (394)
T 1fuu_A 283 ---------------------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA--- 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCC---
Confidence 12378899999999999999999999999999999999999999999999766543
Q ss_pred cCcccccccccccCCCCCCCceEEEEEeChhhHHHHH---hhhccCCCCc
Q 000107 902 IDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIM---GLLNESCPPL 948 (2191)
Q Consensus 902 is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~---~ll~~~l~~l 948 (2191)
+..+|.||+|||||.| ..|.|++++++.+...+. +++...++++
T Consensus 339 -s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 385 (394)
T 1fuu_A 339 -NKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAMRELEKFYSTQIEEL 385 (394)
T ss_dssp --------------------------------------------------
T ss_pred -CHHHHHHHcCcccCCC--CCceEEEEEchhHHHHHHHHHHHhCCccccc
Confidence 7889999999999998 689999999987654433 3344444433
No 31
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.7e-36 Score=395.06 Aligned_cols=331 Identities=22% Similarity=0.284 Sum_probs=250.4
Q ss_pred CcHHHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHH
Q 000107 509 LPSEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKA 587 (2191)
Q Consensus 509 Lp~~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~ 587 (2191)
|++.+.+.+++ +||..|+|+|.++++. ++.|+++++++|||+|||++|.++++. .++++|||+|+++|+.|++
T Consensus 9 L~~~~~~~l~~~~g~~~~r~~Q~~~i~~--il~g~d~lv~apTGsGKTl~~~lp~l~----~~g~~lvi~P~~aL~~q~~ 82 (523)
T 1oyw_A 9 LESGAKQVLQETFGYQQFRPGQEEIIDT--VLSGRDCLVVMPTGGGKSLCYQIPALL----LNGLTVVVSPLISLMKDQV 82 (523)
T ss_dssp HHHHHHHHHHHTTCCSSCCTTHHHHHHH--HHTTCCEEEECSCHHHHHHHHHHHHHH----SSSEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHH--HHcCCCEEEECCCCcHHHHHHHHHHHH----hCCCEEEECChHHHHHHHH
Confidence 56788889988 8999999999999987 899999999999999999999999874 3678999999999999999
Q ss_pred HHHHHHhhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc-
Q 000107 588 EHLEVLLEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN- 658 (2191)
Q Consensus 588 ~~l~~l~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~- 658 (2191)
+.+..+ |+.+..+.|+..... .....+|+|+|||++.... +.......++++|||||+|++.+++
T Consensus 83 ~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~--~~~~l~~~~~~~vViDEaH~i~~~g~ 156 (523)
T 1oyw_A 83 DQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDN--FLEHLAHWNPVLLAVDEAHCISQWGH 156 (523)
T ss_dssp HHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTT--HHHHHTTSCEEEEEESSGGGGCTTSS
T ss_pred HHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChH--HHHHHhhCCCCEEEEeCccccCcCCC
Confidence 888764 778877777653211 1235799999999974321 1111234789999999999999875
Q ss_pred -hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCH--HHHHHHhhcc---cccccccccc
Q 000107 659 -RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNV--AAVADWLQAA---LYETNFRPVP 732 (2191)
Q Consensus 659 -RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~--~~la~wL~a~---l~~~~~Rpvp 732 (2191)
+.+.+..+ ..++.. .+++++|+||||+++. .++.+|++.. .+...+....
T Consensus 157 ~fr~~~~~l-~~l~~~-----------------------~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~ 212 (523)
T 1oyw_A 157 DFRPEYAAL-GQLRQR-----------------------FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN 212 (523)
T ss_dssp CCCHHHHGG-GGHHHH-----------------------CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTT
T ss_pred ccHHHHHHH-HHHHHh-----------------------CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCc
Confidence 34444433 223221 2458999999998763 6678888632 2222221111
Q ss_pred ceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCC
Q 000107 733 LEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHS 812 (2191)
Q Consensus 733 L~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~ 812 (2191)
+...+... ....+.+..++... .++++||||+|++.|+.++..|.+.
T Consensus 213 l~~~v~~~---------------------~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~---------- 259 (523)
T 1oyw_A 213 IRYMLMEK---------------------FKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSK---------- 259 (523)
T ss_dssp EEEEEEEC---------------------SSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHT----------
T ss_pred eEEEEEeC---------------------CCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHC----------
Confidence 11111100 01112233333321 4679999999999999999888541
Q ss_pred CCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEe
Q 000107 813 SDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF 892 (2191)
Q Consensus 813 ~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI 892 (2191)
...+..|||+|+.++|..+++.|++|.++|||||+++++|||+|++++||
T Consensus 260 ------------------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI 309 (523)
T 1oyw_A 260 ------------------------------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309 (523)
T ss_dssp ------------------------------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE
T ss_pred ------------------------------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEE
Confidence 12389999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHHHhhhccC
Q 000107 893 RQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKIMGLLNES 944 (2191)
Q Consensus 893 ~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~~~ll~~~ 944 (2191)
++..+. +..+|.||+|||||.| ..|.|++++.+.+...+..++...
T Consensus 310 ~~~~p~----s~~~y~Qr~GRaGR~g--~~~~~~l~~~~~d~~~~~~~~~~~ 355 (523)
T 1oyw_A 310 HFDIPR----NIESYYQETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEEK 355 (523)
T ss_dssp ESSCCS----SHHHHHHHHTTSCTTS--SCEEEEEEECHHHHHHHHHHHHTS
T ss_pred EECCCC----CHHHHHHHhccccCCC--CCceEEEEeCHHHHHHHHHHHhcc
Confidence 987765 8899999999999999 789999999999988888887763
No 32
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-37 Score=402.64 Aligned_cols=349 Identities=18% Similarity=0.213 Sum_probs=219.1
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccC--CeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQR--RNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICA 584 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g--knlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~ 584 (2191)
+++.+.+.+.+.||..|+++|.++++. ++.+ +++++++|||+|||++|.++++..+... ++++||++|+++|+.
T Consensus 126 l~~~~~~~l~~~g~~~p~~~Q~~ai~~--i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~ 203 (508)
T 3fho_A 126 XXXXXXXXXXXXXXXXXXKIQEKALPL--LLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELAR 203 (508)
T ss_dssp -------------CEECCCTTSSSHHH--HHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHHH--HHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHH
Confidence 677888888889999999999999986 7777 9999999999999999999999887653 458999999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc-cchhHHH
Q 000107 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD-QNRGYLL 663 (2191)
Q Consensus 585 q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d-~~RG~~l 663 (2191)
|+++++++++...++.+...+++........+.+|+|+||+++..++.+ ....+.++++|||||+|++.+ .++...+
T Consensus 204 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~--~~~~~~~~~lIIiDEaH~~~~~~~~~~~~ 281 (508)
T 3fho_A 204 QIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKR--RQLDARDIKVFVLDEADNMLDQQGLGDQS 281 (508)
T ss_dssp HHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEECCHHHHTTC--CHHHH
T ss_pred HHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHc--CCccccCCCEEEEechhhhcccCCcHHHH
Confidence 9999999988777776665555544333344689999999998877765 444688999999999999987 3444444
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHhhcccccc--c---cccccceEEE
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWLQAALYET--N---FRPVPLEEYI 737 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL~a~l~~~--~---~RpvpL~e~i 737 (2191)
..++..+ ..+.|+|+||||+++ ...+..++....... . ..+..+...+
T Consensus 282 ~~i~~~~--------------------------~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 335 (508)
T 3fho_A 282 MRIKHLL--------------------------PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLY 335 (508)
T ss_dssp HHHHHHS--------------------------CTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEE
T ss_pred HHHHHhC--------------------------CcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEE
Confidence 4333322 346899999999986 566665554321110 0 0000111111
Q ss_pred EeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchh
Q 000107 738 KVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEF 817 (2191)
Q Consensus 738 ~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~ 817 (2191)
... ..... ....+..++... .++++||||++++.|+.++..|.+
T Consensus 336 ~~~----~~~~~--------------k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~---------------- 379 (508)
T 3fho_A 336 MDC----QSEEH--------------KYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTA---------------- 379 (508)
T ss_dssp EEC------CHH--------------HHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTT----------------
T ss_pred EEC----CchHH--------------HHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHh----------------
Confidence 000 00000 011122222211 457999999999999988877632
Q ss_pred hhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC
Q 000107 818 IDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI 897 (2191)
Q Consensus 818 ~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~ 897 (2191)
...++..|||+++..+|..+++.|++|.++|||||+++++|||+|++++||++..+
T Consensus 380 ------------------------~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p 435 (508)
T 3fho_A 380 ------------------------DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 435 (508)
T ss_dssp ------------------------TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----
T ss_pred ------------------------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCC
Confidence 12347889999999999999999999999999999999999999999999976543
Q ss_pred C--CcccCcccccccccccCCCCCCCceEEEEEeChh----hHHHHHhhhccCCCCcc
Q 000107 898 G--RDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE----EVKKIMGLLNESCPPLH 949 (2191)
Q Consensus 898 g--~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~----e~~~~~~ll~~~l~~l~ 949 (2191)
. ....+..+|+||+|||||.| ..|.|++++.+. ....+.+++...+..+.
T Consensus 436 ~~~~~~~s~~~~~Qr~GRagR~g--~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~ 491 (508)
T 3fho_A 436 LDQAGRPDPQTYLHRIGRTGRFG--RVGVSINFVHDKKSWEEMNAIQEYFQRPITRVP 491 (508)
T ss_dssp CC-----CTHHHHHTTSCCC-------CEEEEEECTTTSSSSHHHHHHHSCCCCC---
T ss_pred CcccCCCCHHHHHHHhhhcCCCC--CCcEEEEEEeChHHHHHHHHHHHHHCCCcccCC
Confidence 1 22257889999999999999 789999999753 25566677766665543
No 33
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.1e-35 Score=374.35 Aligned_cols=339 Identities=18% Similarity=0.206 Sum_probs=239.7
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHH
Q 000107 511 SEICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEH 589 (2191)
Q Consensus 511 ~~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~ 589 (2191)
+.+.+.+++ .|| +|+|+|.++++. ++.|+|++++||||+|||++|+++++..+ ..++++||++|+++|+.|+++.
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~--i~~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~ 83 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKR--IVQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLER 83 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHH--HTTTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHH--HhcCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHH
Confidence 345566665 566 899999999987 88999999999999999999888877654 5688999999999999999999
Q ss_pred HHHHhhccCCeEEEEeccCCCC-------CC-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc---
Q 000107 590 LEVLLEPLGRHVRSYYGNQGGG-------SL-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN--- 658 (2191)
Q Consensus 590 l~~l~~~lg~~V~~~~G~~~~~-------~l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~--- 658 (2191)
++.++. .++++..++|+.... .+ ...++|+|+||+++..+++. ..+.++++|||||+|++.+++
T Consensus 84 ~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 84 LQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHhhhhccchh
Confidence 999877 889999999876531 11 12389999999998777664 356789999999999987543
Q ss_pred --------hhHH-HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc-CCCH---HHHHHHhhccccc
Q 000107 659 --------RGYL-LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT-MPNV---AAVADWLQAALYE 725 (2191)
Q Consensus 659 --------RG~~-lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT-L~N~---~~la~wL~a~l~~ 725 (2191)
+... ++.++..++..... .........|+++|||| .+.. ..+..+++.....
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~---------------~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 223 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIY---------------ERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR 223 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCC---------------CCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhh---------------hhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc
Confidence 2222 45555554311000 00011256899999999 4431 2233333322211
Q ss_pred cccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhh
Q 000107 726 TNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKK 805 (2191)
Q Consensus 726 ~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~ 805 (2191)
....+..+...+.. ....+.+..++.. .++++||||++++.|+.++..|...
T Consensus 224 ~~~~~~~i~~~~~~----------------------~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~--- 275 (414)
T 3oiy_A 224 LVSVARNITHVRIS----------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF--- 275 (414)
T ss_dssp CCCCCCSEEEEEES----------------------SCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHT---
T ss_pred cccccccchheeec----------------------cCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHc---
Confidence 11111112211110 1123344555554 3589999999999999998887541
Q ss_pred cccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE-EEcCCCCHHHHHHHHHHhhcCCceEEEe----ccccc
Q 000107 806 FSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA-YHHAGLTVEEREVVETCYRKGLVRVLTA----TSTLA 880 (2191)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa-~hHagLs~~eR~~Ve~~Fr~G~ikVLVA----TstLa 880 (2191)
...+. .+||. +|+ ++.|++|.++|||| |++++
T Consensus 276 -------------------------------------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~ 312 (414)
T 3oiy_A 276 -------------------------------------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLT 312 (414)
T ss_dssp -------------------------------------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCC
T ss_pred -------------------------------------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhh
Confidence 12265 78884 454 99999999999999 99999
Q ss_pred ccCCCCC-ceEEeecCCCCCcccCcccccccccccCCCCCC--CceEEEEEeChhh-HHHHHhhhc--cCCC
Q 000107 881 AGVNLPA-RRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGID--TKGESMLICKPEE-VKKIMGLLN--ESCP 946 (2191)
Q Consensus 881 ~GVNLPa-v~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d--~~Ge~ill~~~~e-~~~~~~ll~--~~l~ 946 (2191)
+|||+|+ +++||+++.+.. .+..+|+||+|||||.|.+ ..|.|++++.+.. ...+.+++. ..++
T Consensus 313 ~GiDip~~v~~VI~~~~p~~--~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~ 382 (414)
T 3oiy_A 313 RGVDLPERIKYVIFWGTPSG--PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEE 382 (414)
T ss_dssp CCCCCTTTCCEEEEESCCTT--TCHHHHHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_pred ccCccccccCEEEEECCCCC--CCHHHHHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHhccccccc
Confidence 9999999 999998766510 2789999999999999966 6899999995533 345555665 5554
No 34
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1e-33 Score=370.64 Aligned_cols=352 Identities=16% Similarity=0.213 Sum_probs=222.8
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc----CCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST----GKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~----g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
+|+|+|.++++. ++.|+++++++|||+|||++|.+++++.+... ++++|||+|+++|+.|+++.+.+++...++
T Consensus 4 ~~~~~Q~~~i~~--~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALP--AKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHH--HhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 799999999987 88999999999999999999999999888763 778999999999999999999999988899
Q ss_pred eEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcC-CCCccceEEEcccccccccchhHHHHHHHHHHHHhh
Q 000107 600 HVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEG-RLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAA 674 (2191)
Q Consensus 600 ~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~ 674 (2191)
++..++|+..... ...+++|+|+||+++..++.. ... .+.++++|||||+|++.+.+ . +..++.++....
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~--~-~~~~~~~~~~~~ 156 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN--GAIPSLSVFTLMIFDECHNTSKNH--P-YNQIMFRYLDHK 156 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHT--SSSCCGGGCSEEEETTGGGCSTTC--H-HHHHHHHHHHHH
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhc--CcccccccCCEEEEECccccCCcc--h-HHHHHHHHHHhh
Confidence 9999999874322 123479999999998887764 333 67889999999999998753 2 444443332221
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC------------HHHHHHHhhcccccc---------ccccccc
Q 000107 675 GEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN------------VAAVADWLQAALYET---------NFRPVPL 733 (2191)
Q Consensus 675 ~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N------------~~~la~wL~a~l~~~---------~~RpvpL 733 (2191)
.. ....+.+|+++||||+++ ...+..++++..+.. .+...|.
T Consensus 157 ~~-----------------~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~ 219 (555)
T 3tbk_A 157 LG-----------------ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQ 219 (555)
T ss_dssp TS-----------------SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCC
T ss_pred hc-----------------cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCc
Confidence 10 011356899999999853 223445555332211 1112222
Q ss_pred eEEEEeccccccchhh--------------------------------------HHH-----------------------
Q 000107 734 EEYIKVGNAIYSKKMD--------------------------------------VVR----------------------- 752 (2191)
Q Consensus 734 ~e~i~~~~~~~~~~~~--------------------------------------~~r----------------------- 752 (2191)
..++.+.......... .+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (555)
T 3tbk_A 220 KISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKA 299 (555)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHH
T ss_pred eEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 2222222100000000 000
Q ss_pred -------------------------------HHH------------------------------HhhccCCCChhHHHHH
Q 000107 753 -------------------------------TIL------------------------------TAANLGGKDPDHIVEL 771 (2191)
Q Consensus 753 -------------------------------~l~------------------------------~~~~~~~~d~d~l~~L 771 (2191)
.+. ........+...+..+
T Consensus 300 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 379 (555)
T 3tbk_A 300 LFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLV 379 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHH
Confidence 000 0000011223344555
Q ss_pred HHHHHh--cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEE
Q 000107 772 CDEVVQ--EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYH 849 (2191)
Q Consensus 772 l~e~~~--~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~h 849 (2191)
+.+... .++++||||+++..++.++..|......... ....+.+.+...+
T Consensus 380 l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~----------------------------~~~~~~g~~~~~~ 431 (555)
T 3tbk_A 380 LQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFL----------------------------KPGILTGRGRTNR 431 (555)
T ss_dssp HHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTC----------------------------CEEECCC------
T ss_pred HHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCce----------------------------eeeEEEecCCccc
Confidence 555443 3489999999999999999888653110000 0112234567778
Q ss_pred cCCCCHHHHHHHHHHhhc-CCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEE
Q 000107 850 HAGLTVEEREVVETCYRK-GLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLI 928 (2191)
Q Consensus 850 HagLs~~eR~~Ve~~Fr~-G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill 928 (2191)
||+|++++|..+++.|++ |.++|||||+++++|||+|++++||+++.+. +..+|.||+|| ||.. .|.+|++
T Consensus 432 ~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~----s~~~~~Qr~GR-gR~~---~g~~~~l 503 (555)
T 3tbk_A 432 ATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG----NVIKMIQTRGR-GRAR---DSKCFLL 503 (555)
T ss_dssp --------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS----SCCCEECSSCC-CTTT---SCEEEEE
T ss_pred ccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC----CHHHHHHhcCc-CcCC---CceEEEE
Confidence 999999999999999999 9999999999999999999999999887765 88999999999 8874 8999999
Q ss_pred eChhhHH
Q 000107 929 CKPEEVK 935 (2191)
Q Consensus 929 ~~~~e~~ 935 (2191)
+.+.+..
T Consensus 504 ~~~~~~~ 510 (555)
T 3tbk_A 504 TSSADVI 510 (555)
T ss_dssp ESCHHHH
T ss_pred EcCCCHH
Confidence 9886543
No 35
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.8e-34 Score=375.24 Aligned_cols=354 Identities=18% Similarity=0.237 Sum_probs=196.4
Q ss_pred CCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc----CCEEEEEchhHHHHHHHHHHHHHHhhc
Q 000107 521 GISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST----GKMALLVLPYVSICAEKAEHLEVLLEP 596 (2191)
Q Consensus 521 Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~----g~kaL~I~P~raLA~q~~~~l~~l~~~ 596 (2191)
+..+|+|+|.++++. ++.++++++++|||+|||++|.+++++.+... ++++|||+|+++|+.|+++.+.+++..
T Consensus 4 ~~~~~~~~Q~~~i~~--~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 4 ETKKARSYQIELAQP--AINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ----CCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHH--HHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 345899999999987 88999999999999999999999999887763 678999999999999999999999988
Q ss_pred cCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcC-CCCccceEEEcccccccccchhHHHHHHHHHHH
Q 000107 597 LGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEG-RLSEIGIIVIDELHMVADQNRGYLLELLLTKLR 671 (2191)
Q Consensus 597 lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr 671 (2191)
.++++..++|+..... ...+++|+|+||+++..++.+ ... .+.++++|||||+|++.+.+. +..++.++.
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~~~~ 156 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNHP---YNVLMTRYL 156 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS--SSCCCSTTCSEEEEETGGGCSTTSH---HHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh--CcccccccCCEEEEECCcccCCcch---HHHHHHHHH
Confidence 8999999988764322 113579999999998887764 333 688999999999999987642 444443332
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC--CHHHHHHH----------hhcccccc---------cccc
Q 000107 672 YAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP--NVAAVADW----------LQAALYET---------NFRP 730 (2191)
Q Consensus 672 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~--N~~~la~w----------L~a~l~~~---------~~Rp 730 (2191)
..... ...+..|+|+||||++ |..++.+| ++...+.. .+..
T Consensus 157 ~~~~~------------------~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~ 218 (556)
T 4a2p_A 157 EQKFN------------------SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMN 218 (556)
T ss_dssp HHHHC------------------C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTC
T ss_pred Hhhhc------------------ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCC
Confidence 21110 0135689999999984 33334444 33221111 1111
Q ss_pred ccceEEEEeccccccchhh-------H------------------------------H----------------------
Q 000107 731 VPLEEYIKVGNAIYSKKMD-------V------------------------------V---------------------- 751 (2191)
Q Consensus 731 vpL~e~i~~~~~~~~~~~~-------~------------------------------~---------------------- 751 (2191)
.|....+.+.......... . +
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (556)
T 4a2p_A 219 KPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRIC 298 (556)
T ss_dssp CCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHH
T ss_pred CCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 2222222221100000000 0 0
Q ss_pred --------------------------------HHHH---------------------------Hhhc---cCCCChhHHH
Q 000107 752 --------------------------------RTIL---------------------------TAAN---LGGKDPDHIV 769 (2191)
Q Consensus 752 --------------------------------r~l~---------------------------~~~~---~~~~d~d~l~ 769 (2191)
..+. .... ....+...+.
T Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~ 378 (556)
T 4a2p_A 299 RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELV 378 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHH
Confidence 0000 0000 0011223344
Q ss_pred HHHHHHH--hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE
Q 000107 770 ELCDEVV--QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA 847 (2191)
Q Consensus 770 ~Ll~e~~--~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa 847 (2191)
.++.+.. ..+.++||||+++..++.++..|.+....... ....+.+.+..
T Consensus 379 ~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~----------------------------~~~~~~g~~~~ 430 (556)
T 4a2p_A 379 CILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI----------------------------KPGVLMGRGRR 430 (556)
T ss_dssp HHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSC----------------------------CEEC-------
T ss_pred HHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCccee----------------------------eeeEEEccCCc
Confidence 4444443 45689999999999999888877542100000 00112345577
Q ss_pred EEcCCCCHHHHHHHHHHhhc-CCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEE
Q 000107 848 YHHAGLTVEEREVVETCYRK-GLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESM 926 (2191)
Q Consensus 848 ~hHagLs~~eR~~Ve~~Fr~-G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~i 926 (2191)
.+||+|+.++|..+++.|++ |.++|||||+++++|||+|++++||+++.+. +...|.||+|| ||.. .|.+|
T Consensus 431 ~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~----s~~~~~Qr~GR-gR~~---~g~~~ 502 (556)
T 4a2p_A 431 DQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG----NVTKMIQVRGR-GRAA---GSKCI 502 (556)
T ss_dssp -----------------------CCEEEEEC-----------CEEEEETCCS----CHHHHHHC------------CCEE
T ss_pred ccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCC----CHHHHHHhcCC-CCCC---CceEE
Confidence 78999999999999999999 9999999999999999999999999887765 88999999999 9985 89999
Q ss_pred EEeChhhHH
Q 000107 927 LICKPEEVK 935 (2191)
Q Consensus 927 ll~~~~e~~ 935 (2191)
+++.+.+..
T Consensus 503 ~l~~~~~~~ 511 (556)
T 4a2p_A 503 LVTSKTEVV 511 (556)
T ss_dssp EEESCHHHH
T ss_pred EEEeCcchH
Confidence 999886543
No 36
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.6e-33 Score=380.12 Aligned_cols=361 Identities=15% Similarity=0.203 Sum_probs=205.3
Q ss_pred HHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC----CEEEEEchhHHHHHHHHHHH
Q 000107 515 SIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG----KMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 515 ~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g----~kaL~I~P~raLA~q~~~~l 590 (2191)
+.+..+||.+|+|+|.++++. ++.|+|+|+++|||+|||++|.++++..+...+ +++|||+|+++|+.|+.+.+
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~--~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALP--AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHH--HHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHH
Confidence 345678999999999999987 889999999999999999999999998877543 78999999999999999999
Q ss_pred HHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcC-CCCccceEEEcccccccccchhHHHHH
Q 000107 591 EVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEG-RLSEIGIIVIDELHMVADQNRGYLLEL 665 (2191)
Q Consensus 591 ~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~~RG~~lE~ 665 (2191)
++++...++++..++|+..... +..+++|+||||+++...+.+ ... .+.++++|||||+|++.+.. .+..
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~--~~~~~l~~~~~vViDEaH~~~~~~---~~~~ 156 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDECHNTSKQH---PYNM 156 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT--TSSCCGGGCSEEEEETGGGCSTTC---HHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc--CcccccccccEEEEeCCCcccCcc---cHHH
Confidence 9998888999999998764322 113589999999998877764 223 57889999999999998653 2333
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC---------HHHHHHH---hhccccccc------
Q 000107 666 LLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN---------VAAVADW---LQAALYETN------ 727 (2191)
Q Consensus 666 lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N---------~~~la~w---L~a~l~~~~------ 727 (2191)
++.++....-. ....+.+|+|+||||+.+ ...+... ++...+.+.
T Consensus 157 i~~~~l~~~~~-----------------~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 219 (696)
T 2ykg_A 157 IMFNYLDQKLG-----------------GSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEE 219 (696)
T ss_dssp HHHHHHHHHHT-----------------TCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHH
T ss_pred HHHHHHHHhhc-----------------ccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHH
Confidence 33222111000 012356899999999862 2222222 222111110
Q ss_pred ---cccccceEEEEeccccc---cchh----hHHHHHH------------------------------------------
Q 000107 728 ---FRPVPLEEYIKVGNAIY---SKKM----DVVRTIL------------------------------------------ 755 (2191)
Q Consensus 728 ---~RpvpL~e~i~~~~~~~---~~~~----~~~r~l~------------------------------------------ 755 (2191)
+...|...+..+..... .... ..+..+.
T Consensus 220 l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (696)
T 2ykg_A 220 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK 299 (696)
T ss_dssp HHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------
T ss_pred HHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccc
Confidence 00111111111110000 0000 0000000
Q ss_pred -----------------------------------------------------------H--------------hhccCC
Q 000107 756 -----------------------------------------------------------T--------------AANLGG 762 (2191)
Q Consensus 756 -----------------------------------------------------------~--------------~~~~~~ 762 (2191)
. ......
T Consensus 300 ~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 379 (696)
T 2ykg_A 300 DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN 379 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCC
T ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 0 000011
Q ss_pred CChhHHHHHHHHHH--hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhh
Q 000107 763 KDPDHIVELCDEVV--QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEE 840 (2191)
Q Consensus 763 ~d~d~l~~Ll~e~~--~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~ 840 (2191)
.....+..++.+.. ..++++||||+++..|+.++..|.......... ...
T Consensus 380 ~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~----------------------------~~~ 431 (696)
T 2ykg_A 380 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLK----------------------------PGI 431 (696)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCC----------------------------EEC
T ss_pred HHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccc----------------------------eeE
Confidence 12233444444443 145799999999999999988886521000000 011
Q ss_pred hcCCcEEEEcCCCCHHHHHHHHHHhhc-CCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCC
Q 000107 841 TLPSGVAYHHAGLTVEEREVVETCYRK-GLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGI 919 (2191)
Q Consensus 841 ~l~~GVa~hHagLs~~eR~~Ve~~Fr~-G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~ 919 (2191)
+.+.|...+||+|++++|..+++.|++ |.++|||||+++++|||+|++++||+++.+. +..+|+||+|| ||..
T Consensus 432 l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~----s~~~~~Qr~GR-GR~~- 505 (696)
T 2ykg_A 432 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG----NVIKMIQTRGR-GRAR- 505 (696)
T ss_dssp -----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC------CCCC----------C-
T ss_pred EEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCC----CHHHHHHhhcc-CcCC-
Confidence 223445566999999999999999998 9999999999999999999999999987765 78899999999 9974
Q ss_pred CCceEEEEEeChhhHH
Q 000107 920 DTKGESMLICKPEEVK 935 (2191)
Q Consensus 920 d~~Ge~ill~~~~e~~ 935 (2191)
.|.|+++++..+..
T Consensus 506 --~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 506 --GSKCFLLTSNAGVI 519 (696)
T ss_dssp --CCEEEEEESCHHHH
T ss_pred --CceEEEEecCCCHH
Confidence 89999999886653
No 37
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-32 Score=376.65 Aligned_cols=355 Identities=17% Similarity=0.236 Sum_probs=205.6
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc----CCEEEEEchhHHHHHHHHHHHHHHhh
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST----GKMALLVLPYVSICAEKAEHLEVLLE 595 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~----g~kaL~I~P~raLA~q~~~~l~~l~~ 595 (2191)
.|+..|+|+|.++++. ++.|+++|+++|||+|||++|.++++..+... ++++|||+|+++|+.|++..|++++.
T Consensus 244 ~g~~~l~~~Q~~~i~~--~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 244 YETKKARSYQIELAQP--AINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ----CCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred cCCCCCCHHHHHHHHH--HHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 5778999999999987 88999999999999999999999999888764 77999999999999999999999998
Q ss_pred ccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcC-CCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 596 PLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEG-RLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 596 ~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
..++++..++|+..... +..+++|+|+||+++..++.+ ... .+.++++|||||+|++.+.+ . +..++.++
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~~iViDEaH~~~~~~--~-~~~i~~~~ 396 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--P-YNVLMTRY 396 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEETTGGGCSTTS--H-HHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHh--ccccccccCCEEEEECccccCCCc--c-HHHHHHHH
Confidence 88999999999874322 123679999999998877764 333 67889999999999998753 2 44444443
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC------------CHHHHHHHhhccccccc---------cc
Q 000107 671 RYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP------------NVAAVADWLQAALYETN---------FR 729 (2191)
Q Consensus 671 r~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~------------N~~~la~wL~a~l~~~~---------~R 729 (2191)
...... ...+.+|+|+||||++ +...+..+++...+... +.
T Consensus 397 ~~~~~~------------------~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~ 458 (797)
T 4a2q_A 397 LEQKFN------------------SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFM 458 (797)
T ss_dssp HHHHHT------------------TCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHS
T ss_pred HHHhhc------------------cCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhc
Confidence 322111 0235689999999984 23334455554322110 00
Q ss_pred cccceEEEEeccccccchhh-------------------------------------HH---------------------
Q 000107 730 PVPLEEYIKVGNAIYSKKMD-------------------------------------VV--------------------- 751 (2191)
Q Consensus 730 pvpL~e~i~~~~~~~~~~~~-------------------------------------~~--------------------- 751 (2191)
..|...++.+.......... .+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (797)
T 4a2q_A 459 NKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRI 538 (797)
T ss_dssp CCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHH
T ss_pred CCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHH
Confidence 11222222211100000000 00
Q ss_pred ---------------------------------HHHH---------------------------Hhhcc---CCCChhHH
Q 000107 752 ---------------------------------RTIL---------------------------TAANL---GGKDPDHI 768 (2191)
Q Consensus 752 ---------------------------------r~l~---------------------------~~~~~---~~~d~d~l 768 (2191)
..+. ..... ...+...+
T Consensus 539 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L 618 (797)
T 4a2q_A 539 CRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEEL 618 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHH
Confidence 0000 00000 01122334
Q ss_pred HHHHHHHH--hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcE
Q 000107 769 VELCDEVV--QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGV 846 (2191)
Q Consensus 769 ~~Ll~e~~--~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GV 846 (2191)
..++.+.. ..+.++||||++++.++.++..|.......+. ......+.++
T Consensus 619 ~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~----------------------------~~~~l~G~~~ 670 (797)
T 4a2q_A 619 VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI----------------------------KPGVLMGRGR 670 (797)
T ss_dssp HHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSC----------------------------CCEEC-----
T ss_pred HHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccc----------------------------cceEEEecCC
Confidence 44444433 34689999999999999888887541100000 0112234567
Q ss_pred EEEcCCCCHHHHHHHHHHhhc-CCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEE
Q 000107 847 AYHHAGLTVEEREVVETCYRK-GLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGES 925 (2191)
Q Consensus 847 a~hHagLs~~eR~~Ve~~Fr~-G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ 925 (2191)
..+||+|+..+|..+++.|++ |.++|||||+++++|||+|++++||+++.+. +...|+||+|| ||.. .|.|
T Consensus 671 ~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~----s~~~~iQr~GR-GR~~---~g~~ 742 (797)
T 4a2q_A 671 RDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG----NVTKMIQVRGR-GRAA---GSKC 742 (797)
T ss_dssp -----------------------CCSEEEEECC-------CCCSEEEEESCCS----CHHHHHTC-----------CCCE
T ss_pred cccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCC----CHHHHHHhcCC-CCCC---CceE
Confidence 788999999999999999999 9999999999999999999999999987765 88999999999 9984 8999
Q ss_pred EEEeChhhHH
Q 000107 926 MLICKPEEVK 935 (2191)
Q Consensus 926 ill~~~~e~~ 935 (2191)
|+++++.+..
T Consensus 743 i~l~~~~~~e 752 (797)
T 4a2q_A 743 ILVTSKTEVV 752 (797)
T ss_dssp EEEECCHHHH
T ss_pred EEEEeCCcHH
Confidence 9999886543
No 38
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=1.4e-31 Score=342.57 Aligned_cols=333 Identities=18% Similarity=0.259 Sum_probs=229.4
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS 603 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~ 603 (2191)
.|+|+|.+++.. ++.+ ++++++|||+|||+++.++++..+...++++|||+|+++|+.|+.+++.+++...+.++..
T Consensus 9 ~l~~~Q~~~i~~--~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAK--CKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHH--GGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHH--HhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 799999999986 7777 9999999999999999999988776678899999999999999999999886433447888
Q ss_pred EeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCC
Q 000107 604 YYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSD 680 (2191)
Q Consensus 604 ~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~ 680 (2191)
++|+..... ...+.+|+|+||+.+...+.+ ....+.++++|||||+|.+.+... ...++..+...
T Consensus 86 ~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~~---~~~~~~~~~~~------- 153 (494)
T 1wp9_A 86 LTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGNYA---YVFIAREYKRQ------- 153 (494)
T ss_dssp ECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTTCH---HHHHHHHHHHH-------
T ss_pred eeCCcchhhhhhhccCCCEEEecHHHHHHHHhc--CCcchhhceEEEEECCcccCCCCc---HHHHHHHHHhc-------
Confidence 888653211 112578999999998877654 344678899999999999975422 22333333322
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHH---HHHHhhcccc----------ccccccccceEEEEeccc-ccc
Q 000107 681 SSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAA---VADWLQAALY----------ETNFRPVPLEEYIKVGNA-IYS 745 (2191)
Q Consensus 681 s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~---la~wL~a~l~----------~~~~RpvpL~e~i~~~~~-~~~ 745 (2191)
.+..++++||||+.+ ..+ +..+++...+ ...+.+... .+...... ...
T Consensus 154 ----------------~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 216 (494)
T 1wp9_A 154 ----------------AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRF-EWVRVDLPEIYK 216 (494)
T ss_dssp ----------------CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCE-EEEEECCCHHHH
T ss_pred ----------------CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCce-eEEecCCcHHHH
Confidence 246789999999863 344 4444442211 000111110 11110000 000
Q ss_pred chhhH---------------------------------------------------------------------------
Q 000107 746 KKMDV--------------------------------------------------------------------------- 750 (2191)
Q Consensus 746 ~~~~~--------------------------------------------------------------------------- 750 (2191)
.-...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (494)
T 1wp9_A 217 EVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSA 296 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence 00000
Q ss_pred HHHHH----------------------------------HhhccCCCChhHHHHHHHHHH--hcCCcEEEEeCchhHHHH
Q 000107 751 VRTIL----------------------------------TAANLGGKDPDHIVELCDEVV--QEGHSVLIFCSSRKGCES 794 (2191)
Q Consensus 751 ~r~l~----------------------------------~~~~~~~~d~d~l~~Ll~e~~--~~g~~vLVF~~Sr~~~e~ 794 (2191)
..... ........+...+.+++.+.. ..+.++||||+++..++.
T Consensus 297 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~ 376 (494)
T 1wp9_A 297 LRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKK 376 (494)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHH
T ss_pred HHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHH
Confidence 00000 000011112234455555554 357899999999999998
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcC--------CCCHHHHHHHHHHhh
Q 000107 795 TARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHA--------GLTVEEREVVETCYR 866 (2191)
Q Consensus 795 lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHa--------gLs~~eR~~Ve~~Fr 866 (2191)
++..|... +..+..+|| +|+..+|..+++.|+
T Consensus 377 l~~~L~~~----------------------------------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 416 (494)
T 1wp9_A 377 IVNELVKD----------------------------------------GIKAKRFVGQASKENDRGLSQREQKLILDEFA 416 (494)
T ss_dssp HHHHHHHT----------------------------------------TCCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred HHHHHHHc----------------------------------------CCCcEEEeccccccccccCCHHHHHHHHHHHh
Confidence 88777542 123777888 999999999999999
Q ss_pred cCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHH
Q 000107 867 KGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVK 935 (2191)
Q Consensus 867 ~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~ 935 (2191)
+|.++|||||+++++|||+|++++||.++.+. +...|.||+|||||.| .|.+|+++.+...+
T Consensus 417 ~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~----~~~~~~Qr~GR~~R~g---~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 417 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP----SAIRSIQRRGRTGRHM---PGRVIILMAKGTRD 478 (494)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCH----HHHHHHHHHTTSCSCC---CSEEEEEEETTSHH
T ss_pred cCCceEEEECCccccCCCchhCCEEEEeCCCC----CHHHHHHHHhhccCCC---CceEEEEEecCCHH
Confidence 99999999999999999999999999766543 7788999999999999 39999998876433
No 39
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=3.1e-32 Score=367.81 Aligned_cols=348 Identities=16% Similarity=0.209 Sum_probs=221.9
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-----CCEEEEEchhHHHHHHH-HHHHHHHhhcc
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-----GKMALLVLPYVSICAEK-AEHLEVLLEPL 597 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-----g~kaL~I~P~raLA~q~-~~~l~~l~~~l 597 (2191)
+|+|+|.++++. ++.|+++|+++|||+|||++|.++++..+... ++++|||+|+++|+.|+ ++++++++..
T Consensus 7 ~l~~~Q~~~i~~--il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQP--ALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 83 (699)
T ss_dssp CCCHHHHHHHHH--HHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-
T ss_pred CccHHHHHHHHH--HHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-
Confidence 799999999987 88999999999999999999999998876652 27899999999999999 9999988765
Q ss_pred CCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHh----hhcCCCCccceEEEcccccccccc-hhHHHHHHHH
Q 000107 598 GRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRM----LEEGRLSEIGIIVIDELHMVADQN-RGYLLELLLT 668 (2191)
Q Consensus 598 g~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l----~~~~~L~~l~lVVIDEaH~l~d~~-RG~~lE~lL~ 668 (2191)
++++..++|+..... +....+|+|+||+++...+.+. .....+.++++|||||+|++.... ....+..++.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 578888888865322 1245899999999987766321 133467889999999999986432 2222222222
Q ss_pred -HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC------------HHHHHHHhhc-ccccccc------
Q 000107 669 -KLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN------------VAAVADWLQA-ALYETNF------ 728 (2191)
Q Consensus 669 -kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N------------~~~la~wL~a-~l~~~~~------ 728 (2191)
+++...... ......+.+|+|+||||+.+ ...+..+++. .+.....
T Consensus 164 ~~~~~~~~~~--------------~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~ 229 (699)
T 4gl2_A 164 QKLKNNRLKK--------------ENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLK 229 (699)
T ss_dssp HHHHHHHHHC------------------CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHH
T ss_pred hhhccccccc--------------ccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHh
Confidence 121111000 00011245799999999875 2334455555 2221111
Q ss_pred --ccccceEEEEeccccccchhhHHHHH----------------------------------------------------
Q 000107 729 --RPVPLEEYIKVGNAIYSKKMDVVRTI---------------------------------------------------- 754 (2191)
Q Consensus 729 --RpvpL~e~i~~~~~~~~~~~~~~r~l---------------------------------------------------- 754 (2191)
.+.|...+..+...........+..+
T Consensus 230 ~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 309 (699)
T 4gl2_A 230 NQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNE 309 (699)
T ss_dssp HHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHH
T ss_pred hhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 12222222222111000000000000
Q ss_pred ------------------------------------------------------------HHhh---ccCCCChhHHHHH
Q 000107 755 ------------------------------------------------------------LTAA---NLGGKDPDHIVEL 771 (2191)
Q Consensus 755 ------------------------------------------------------------~~~~---~~~~~d~d~l~~L 771 (2191)
.... .........+..+
T Consensus 310 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~ 389 (699)
T 4gl2_A 310 ALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNT 389 (699)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 0000 0011223344455
Q ss_pred HHHHHhc---CCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEE
Q 000107 772 CDEVVQE---GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAY 848 (2191)
Q Consensus 772 l~e~~~~---g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~ 848 (2191)
+.+.... ++++||||++++.++.++..|.... ... ..+..+.+
T Consensus 390 L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~---~l~-------------------------------~~g~~~~~ 435 (699)
T 4gl2_A 390 IMEQYTRTEESARGIIFTKTRQSAYALSQWITENE---KFA-------------------------------EVGVKAHH 435 (699)
T ss_dssp HHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSC---SCC------------------------------------CEE
T ss_pred HHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCc---ccc-------------------------------ccCcceEE
Confidence 5554432 6899999999999999998885420 000 01223778
Q ss_pred EcCC--------CCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCC
Q 000107 849 HHAG--------LTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGID 920 (2191)
Q Consensus 849 hHag--------Ls~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d 920 (2191)
+||+ |+..+|..+++.|++|.++|||||+++++|||+|++++||+++.+. +..+|.||+|||||.|
T Consensus 436 lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~----s~~~~~Qr~GRArr~g-- 509 (699)
T 4gl2_A 436 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVT----NEIAMVQARGRARADE-- 509 (699)
T ss_dssp CCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCC----CHHHHHHHHTTSCSSS--
T ss_pred EECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCC----CHHHHHHHcCCCCCCC--
Confidence 9999 9999999999999999999999999999999999999999887765 8899999999988766
Q ss_pred CceEEEEEeC
Q 000107 921 TKGESMLICK 930 (2191)
Q Consensus 921 ~~Ge~ill~~ 930 (2191)
+.+++++.
T Consensus 510 --~~~~l~~~ 517 (699)
T 4gl2_A 510 --STYVLVAH 517 (699)
T ss_dssp --CEEEEEEE
T ss_pred --ceEEEEEe
Confidence 44455544
No 40
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=2e-31 Score=368.67 Aligned_cols=355 Identities=18% Similarity=0.239 Sum_probs=204.3
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc----CCEEEEEchhHHHHHHHHHHHHHHhh
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST----GKMALLVLPYVSICAEKAEHLEVLLE 595 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~----g~kaL~I~P~raLA~q~~~~l~~l~~ 595 (2191)
.|+.+|+|+|.++++. ++.|+++|+++|||+|||++|.++++..+... ++++|||+|+++|+.|++..|++++.
T Consensus 244 ~~~~~~r~~Q~~ai~~--il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 244 YETKKARSYQIELAQP--AINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ----CCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHH--HHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4677999999999987 88999999999999999999999998876653 67899999999999999999999998
Q ss_pred ccCCeEEEEeccCCCCCC----CCCCceEEEchHHHHHHHHHhhhcC-CCCccceEEEcccccccccchhHHHHHHHHHH
Q 000107 596 PLGRHVRSYYGNQGGGSL----PKDTSVAVCTIEKANSLVNRMLEEG-RLSEIGIIVIDELHMVADQNRGYLLELLLTKL 670 (2191)
Q Consensus 596 ~lg~~V~~~~G~~~~~~l----~~~~~IiV~TpEkl~~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kL 670 (2191)
..++++..++|+...... ..+++|+|+||+++..++.+ ... .+.++++|||||+|++...+ . +..++.++
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~--~~~~~l~~~~liViDEaH~~~~~~--~-~~~i~~~~ 396 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--P-YNVLMTRY 396 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEEETGGGCSTTC--H-HHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHc--CccccccCCCEEEEECccccCCCc--c-HHHHHHHH
Confidence 889999999998743221 13579999999998887764 333 57889999999999998753 2 44444444
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC--C----------HHHHHHHhhccccccc---------cc
Q 000107 671 RYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP--N----------VAAVADWLQAALYETN---------FR 729 (2191)
Q Consensus 671 r~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~--N----------~~~la~wL~a~l~~~~---------~R 729 (2191)
...... ...+..|+++||||+. + +..+...|+...+... +-
T Consensus 397 ~~~~~~------------------~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~ 458 (936)
T 4a2w_A 397 LEQKFN------------------SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFM 458 (936)
T ss_dssp HHHHHT------------------TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHS
T ss_pred HHHhhc------------------cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhc
Confidence 322111 0135689999999984 2 2334445554322110 11
Q ss_pred cccceEEEEeccccccchh-------------------------------------------------------------
Q 000107 730 PVPLEEYIKVGNAIYSKKM------------------------------------------------------------- 748 (2191)
Q Consensus 730 pvpL~e~i~~~~~~~~~~~------------------------------------------------------------- 748 (2191)
+.|...+..+.........
T Consensus 459 ~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~ 538 (936)
T 4a2w_A 459 NKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRI 538 (936)
T ss_dssp CCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHH
T ss_pred cCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 1222222222110000000
Q ss_pred --------hH----------------------HHHHH---------------------------Hhhcc---CCCChhHH
Q 000107 749 --------DV----------------------VRTIL---------------------------TAANL---GGKDPDHI 768 (2191)
Q Consensus 749 --------~~----------------------~r~l~---------------------------~~~~~---~~~d~d~l 768 (2191)
.. +..+. ..... .......+
T Consensus 539 ~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L 618 (936)
T 4a2w_A 539 CRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEEL 618 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 00 00000 00000 01112223
Q ss_pred HHHHHHHH--hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcE
Q 000107 769 VELCDEVV--QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGV 846 (2191)
Q Consensus 769 ~~Ll~e~~--~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GV 846 (2191)
..++.+.. ..+.++||||++++.++.++..|.+.....+.. ...+.+.++
T Consensus 619 ~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik----------------------------~~~l~G~~~ 670 (936)
T 4a2w_A 619 VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIK----------------------------PGVLMGRGR 670 (936)
T ss_dssp HHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCC----------------------------CEEC-----
T ss_pred HHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccc----------------------------eeEEecCCC
Confidence 33333332 245899999999999999998886521000000 011234557
Q ss_pred EEEcCCCCHHHHHHHHHHhhc-CCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEE
Q 000107 847 AYHHAGLTVEEREVVETCYRK-GLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGES 925 (2191)
Q Consensus 847 a~hHagLs~~eR~~Ve~~Fr~-G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ 925 (2191)
..+||+|+..+|..+++.|++ |.++|||||+++++|||+|++++||+++.+. +...|+||+|| ||.. .|.+
T Consensus 671 ~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~----s~~~~iQr~GR-GR~~---~g~v 742 (936)
T 4a2w_A 671 RDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG----NVTKMIQVRGR-GRAA---GSKC 742 (936)
T ss_dssp -----------------------CCSEEEEECC------CCCCSEEEEESCCS----CSHHHHCC-----------CCCE
T ss_pred cccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCC----CHHHHHHhcCC-CCCC---CCEE
Confidence 778999999999999999999 9999999999999999999999999887765 88999999999 9985 8999
Q ss_pred EEEeChhhHH
Q 000107 926 MLICKPEEVK 935 (2191)
Q Consensus 926 ill~~~~e~~ 935 (2191)
|+++...+..
T Consensus 743 i~Li~~~t~e 752 (936)
T 4a2w_A 743 ILVTSKTEVV 752 (936)
T ss_dssp EEEESCHHHH
T ss_pred EEEEeCCCHH
Confidence 9999876543
No 41
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=3e-31 Score=369.35 Aligned_cols=327 Identities=19% Similarity=0.231 Sum_probs=230.5
Q ss_pred HHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHH
Q 000107 512 EICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 512 ~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l 590 (2191)
.+.+.+.. .|| +|+|+|.++++. ++.|+|++++||||||||++|+++++..+ ..++++|||+|+++||.|+++.+
T Consensus 66 ~~~~~~~~~~gf-~pt~iQ~~ai~~--il~g~dvlv~ApTGSGKTl~~l~~il~~~-~~~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DLTGYQRLWAKR--IVQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHH--HTTTCCEEECCSTTCCHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHH--HHcCCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCeEEEEechHHHHHHHHHHH
Confidence 34445543 788 699999999987 89999999999999999998877777655 57889999999999999999999
Q ss_pred HHHhhccCCeEEEEeccCCCCC-------C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc----
Q 000107 591 EVLLEPLGRHVRSYYGNQGGGS-------L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN---- 658 (2191)
Q Consensus 591 ~~l~~~lg~~V~~~~G~~~~~~-------l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~---- 658 (2191)
+.+. ..++++..++|+..... + ...++|+|+||+++..++.. ..+.++++|||||+|++.+.+
T Consensus 142 ~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 142 QKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCccccccccch
Confidence 9865 77889999999875411 1 22489999999998777664 346789999999999887643
Q ss_pred -------hhHH-HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccC-CC-H--HHHHHHhhcccccc
Q 000107 659 -------RGYL-LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATM-PN-V--AAVADWLQAALYET 726 (2191)
Q Consensus 659 -------RG~~-lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL-~N-~--~~la~wL~a~l~~~ 726 (2191)
+... ++.++..+..- .. -.........|+++||||+ +. . ..+..++...+...
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~-~~--------------~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~ 281 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQG-KI--------------YERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRL 281 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT-SC--------------CCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBC
T ss_pred hhhHhcCCCHHHHHHHHHhcccc-hh--------------hhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccC
Confidence 2223 45555554310 00 0000012568999999994 43 1 22334443222111
Q ss_pred ccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhc
Q 000107 727 NFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKF 806 (2191)
Q Consensus 727 ~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~ 806 (2191)
...+-.+...+.. ......+..++.. .++++||||++++.|+.++..|...
T Consensus 282 ~~~~~~i~~~~~~----------------------~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~---- 332 (1104)
T 4ddu_A 282 VSVARNITHVRIS----------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF---- 332 (1104)
T ss_dssp CCCCCCEEEEEES----------------------CCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHT----
T ss_pred CCCcCCceeEEEe----------------------cCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhC----
Confidence 1111112222110 1123344555544 3589999999999999998887541
Q ss_pred ccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE-EEcCCCCHHHHHHHHHHhhcCCceEEEe----cccccc
Q 000107 807 SINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA-YHHAGLTVEEREVVETCYRKGLVRVLTA----TSTLAA 881 (2191)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa-~hHagLs~~eR~~Ve~~Fr~G~ikVLVA----TstLa~ 881 (2191)
...+. .+|| +|+. ++.|++|.++|||| |+++++
T Consensus 333 ------------------------------------g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Tdvlar 370 (1104)
T 4ddu_A 333 ------------------------------------KFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTR 370 (1104)
T ss_dssp ------------------------------------TCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCC
T ss_pred ------------------------------------CCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEe
Confidence 12266 7888 2555 99999999999999 999999
Q ss_pred cCCCCC-ceEEeecCCCCC-------------------------------------------------------------
Q 000107 882 GVNLPA-RRVIFRQPRIGR------------------------------------------------------------- 899 (2191)
Q Consensus 882 GVNLPa-v~VVI~~p~~g~------------------------------------------------------------- 899 (2191)
|||+|+ +++||+++.+..
T Consensus 371 GIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~ 450 (1104)
T 4ddu_A 371 GVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVV 450 (1104)
T ss_dssp SCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEE
T ss_pred cCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEe
Confidence 999999 999999877650
Q ss_pred ---c----ccCcccccccccccCCC--CCCCceEEEEEeChhh
Q 000107 900 ---D----FIDGTRYRQMAGRAGRT--GIDTKGESMLICKPEE 933 (2191)
Q Consensus 900 ---~----~is~~~y~QmiGRAGR~--G~d~~Ge~ill~~~~e 933 (2191)
. ..+..+|+||+|||||. |..+.|.+++++++..
T Consensus 451 ~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~ 493 (1104)
T 4ddu_A 451 KDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEE 493 (1104)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHH
T ss_pred cCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHH
Confidence 0 01667899999999995 4345899999996643
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=9.4e-32 Score=344.69 Aligned_cols=292 Identities=16% Similarity=0.138 Sum_probs=202.5
Q ss_pred CCCCCCHHHHHhhhhcccccCCeE-EEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 521 GISKLYPWQVECLHVDGVLQRRNL-VYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 521 Gi~~l~p~Q~eal~~~~il~gknl-Ii~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
|+.+++|+|+ +++. ++.++++ +++||||||||++|.++++..+...+.++||++|+++||.|+++.+. |.
T Consensus 1 G~~q~~~iq~-~i~~--~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDED--IFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGG--GGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHH--HHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 6789999985 7875 7776555 99999999999999999998888888999999999999999998764 44
Q ss_pred eEEEEeccCCC-CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCC
Q 000107 600 HVRSYYGNQGG-GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGT 678 (2191)
Q Consensus 600 ~V~~~~G~~~~-~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~ 678 (2191)
.+.. ..... .....+..|.++|++.+...+ .....+.++++|||||+|++ +..+...++.+..+..
T Consensus 72 ~v~~--~~~~~~~~~~~~~~i~~~t~~~l~~~l---~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~------- 138 (451)
T 2jlq_A 72 PIRY--QTPAVKSDHTGREIVDLMCHATFTTRL---LSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE------- 138 (451)
T ss_dssp CEEE--CCTTCSCCCCSSCCEEEEEHHHHHHHH---HHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHH-------
T ss_pred eeee--eeccccccCCCCceEEEEChHHHHHHh---hCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhc-------
Confidence 4432 22111 123445689999999865444 35567899999999999987 4334444444433221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhh
Q 000107 679 SDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAA 758 (2191)
Q Consensus 679 ~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~ 758 (2191)
.+++|+|+||||+++ .+..++. ...+. +...........
T Consensus 139 ------------------~~~~~~i~~SAT~~~--~~~~~~~--------~~~~~---~~~~~~~p~~~~---------- 177 (451)
T 2jlq_A 139 ------------------MGEAAAIFMTATPPG--STDPFPQ--------SNSPI---EDIEREIPERSW---------- 177 (451)
T ss_dssp ------------------TTSCEEEEECSSCTT--CCCSSCC--------CSSCE---EEEECCCCSSCC----------
T ss_pred ------------------CCCceEEEEccCCCc--cchhhhc--------CCCce---EecCccCCchhh----------
Confidence 246899999999864 1111110 00010 110000000000
Q ss_pred ccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhh
Q 000107 759 NLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVL 838 (2191)
Q Consensus 759 ~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L 838 (2191)
..+...+ ...++++||||+|++.|+.++..|.+.
T Consensus 178 -------~~~~~~l---~~~~~~~lVF~~s~~~a~~l~~~L~~~------------------------------------ 211 (451)
T 2jlq_A 178 -------NTGFDWI---TDYQGKTVWFVPSIKAGNDIANCLRKS------------------------------------ 211 (451)
T ss_dssp -------SSSCHHH---HHCCSCEEEECSSHHHHHHHHHHHHTT------------------------------------
T ss_pred -------HHHHHHH---HhCCCCEEEEcCCHHHHHHHHHHHHHc------------------------------------
Confidence 0011111 234679999999999999888877431
Q ss_pred hhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecC--------CCCC--------ccc
Q 000107 839 EETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQP--------RIGR--------DFI 902 (2191)
Q Consensus 839 ~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p--------~~g~--------~~i 902 (2191)
...+..+|+.+ +..+++.|++|.++|||||+++++|||+|+ ++||+++ ..+. .+.
T Consensus 212 ----g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~ 282 (451)
T 2jlq_A 212 ----GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPV 282 (451)
T ss_dssp ----TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEEC
T ss_pred ----CCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccC
Confidence 12377889875 467899999999999999999999999999 8888765 1111 456
Q ss_pred CcccccccccccCCCCCCCceEEEEEeCh
Q 000107 903 DGTRYRQMAGRAGRTGIDTKGESMLICKP 931 (2191)
Q Consensus 903 s~~~y~QmiGRAGR~G~d~~Ge~ill~~~ 931 (2191)
+..+|+||+|||||.|. ..|.|++++..
T Consensus 283 s~~~y~Qr~GRaGR~g~-~~g~~~~~~~~ 310 (451)
T 2jlq_A 283 TPASAAQRRGRIGRNPA-QEDDQYVFSGD 310 (451)
T ss_dssp CHHHHHHHHTTSSCCTT-CCCEEEEECSC
T ss_pred CHHHHHHhccccCCCCC-CCccEEEEeCC
Confidence 88899999999999993 27889888753
No 43
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.1e-31 Score=360.38 Aligned_cols=321 Identities=17% Similarity=0.219 Sum_probs=223.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHhhhhcccccC------CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHH
Q 000107 511 SEICSIYKKRGISKLYPWQVECLHVDGVLQR------RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584 (2191)
Q Consensus 511 ~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g------knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~ 584 (2191)
..+.+.+...|| +|+++|.++++. ++.+ .|++++||||||||++|.++++..+. .|.+++|++|+++||.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~--I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~-~g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQE--IRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE-AGFQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHH--HHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH-HTSCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHH--HHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHH
Confidence 345556678999 999999999986 6544 69999999999999999999998765 5789999999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 585 EKAEHLEVLLEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 585 q~~~~l~~l~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
|+++.+.+++..+|++|..++|+..... ....++|+|+||+.+. ....+.++++|||||+|+++.
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~~~~~~l~lVVIDEaHr~g~ 504 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ-------EDVHFKNLGLVIIDEQHRFGV 504 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH-------HCCCCSCCCEEEEESCCCC--
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-------hhhhccCCceEEecccchhhH
Confidence 9999999999989999999999865321 1235899999998652 245688999999999999754
Q ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcccc--cccccc---c
Q 000107 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALY--ETNFRP---V 731 (2191)
Q Consensus 657 ~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~--~~~~Rp---v 731 (2191)
..+. .+ ......+++++||||+. +..++..+-..+- .....| .
T Consensus 505 ~qr~--------~l-----------------------~~~~~~~~vL~mSATp~-p~tl~~~~~g~~~~s~i~~~p~~r~ 552 (780)
T 1gm5_A 505 KQRE--------AL-----------------------MNKGKMVDTLVMSATPI-PRSMALAFYGDLDVTVIDEMPPGRK 552 (780)
T ss_dssp ---C--------CC-----------------------CSSSSCCCEEEEESSCC-CHHHHHHHTCCSSCEEECCCCSSCC
T ss_pred HHHH--------HH-----------------------HHhCCCCCEEEEeCCCC-HHHHHHHHhCCcceeeeeccCCCCc
Confidence 3221 00 00124679999999953 3444433221110 000000 0
Q ss_pred cceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccC
Q 000107 732 PLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVH 811 (2191)
Q Consensus 732 pL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~ 811 (2191)
|+..++ ......+.+...+.+.+..+++++|||++...++.+...
T Consensus 553 ~i~~~~----------------------~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~------------- 597 (780)
T 1gm5_A 553 EVQTML----------------------VPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVK------------- 597 (780)
T ss_dssp CCEECC----------------------CCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------C-------------
T ss_pred ceEEEE----------------------eccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHH-------------
Confidence 111100 011223445566666667789999999987765432100
Q ss_pred CCCchhhhhHHHHHHhhcCCCCCChhhhhhc-CCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceE
Q 000107 812 SSDSEFIDITSAIDALRRCPAGLDPVLEETL-PSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRV 890 (2191)
Q Consensus 812 ~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l-~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~V 890 (2191)
......+.|... .+ ..+|+.+||+|++++|+.+++.|++|.++|||||+++++|||+|++++
T Consensus 598 -------~a~~l~~~L~~~----------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~ 660 (780)
T 1gm5_A 598 -------SAVEMYEYLSKE----------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANV 660 (780)
T ss_dssp -------HHHHHHHSGGGS----------CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCE
T ss_pred -------HHHHHHHHHHhh----------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCE
Confidence 001111111110 11 245889999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeCh
Q 000107 891 IFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKP 931 (2191)
Q Consensus 891 VI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~ 931 (2191)
||.+..+ ..+...|.||+||+||.| ..|.||+++++
T Consensus 661 VIi~d~~---r~~l~~l~Qr~GRaGR~g--~~g~~ill~~~ 696 (780)
T 1gm5_A 661 MVIENPE---RFGLAQLHQLRGRVGRGG--QEAYCFLVVGD 696 (780)
T ss_dssp EEBCSCS---SSCTTHHHHHHHTSCCSS--TTCEEECCCCS
T ss_pred EEEeCCC---CCCHHHHHHHhcccCcCC--CCCEEEEEECC
Confidence 8865432 235678899999999998 78999999974
No 44
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=2.9e-31 Score=369.79 Aligned_cols=286 Identities=16% Similarity=0.170 Sum_probs=203.9
Q ss_pred HHHHHHHH-cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHH
Q 000107 512 EICSIYKK-RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 512 ~l~~~l~~-~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l 590 (2191)
.+.+.+.+ .||. | ++|.++++. ++.|+|++++||||||||+ |.++++..+...++++|||+|+++||.|+++.+
T Consensus 45 ~~~~~~~~~~g~~-p-~iQ~~ai~~--il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 45 EFVEFFRKCVGEP-R-AIQKMWAKR--ILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp HHHHHHHTTTCSC-C-HHHHHHHHH--HHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-H-HHHHHHHHH--HHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHH
Confidence 34455544 8999 9 999999987 8999999999999999998 888888888888899999999999999999999
Q ss_pred HHHhhccCC----eEEEEeccCCCCC-------CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 591 EVLLEPLGR----HVRSYYGNQGGGS-------LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 591 ~~l~~~lg~----~V~~~~G~~~~~~-------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
+.++..+++ ++..++|+..... +.. ++|+|+||+++..++.+ ++++++|||||+|++.+ +
T Consensus 120 ~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~--~ 190 (1054)
T 1gku_B 120 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK--A 190 (1054)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT--S
T ss_pred HHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh--c
Confidence 999988888 8999999765421 223 89999999997765543 67899999999999998 5
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcccc--c---cccccccce
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALY--E---TNFRPVPLE 734 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~--~---~~~RpvpL~ 734 (2191)
|..++.++.++.+.... .........|++++|||+++...+..++..... . .....-.+.
T Consensus 191 ~~~~~~i~~~lgf~~~~---------------~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~ 255 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDL---------------KTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVE 255 (1054)
T ss_dssp THHHHHHHHHTTEEEET---------------TTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEE
T ss_pred cccHHHHHHHhCcchhh---------------hhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCce
Confidence 78888888776432110 000113457899999998864323322221111 1 111111111
Q ss_pred EEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCC
Q 000107 735 EYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSD 814 (2191)
Q Consensus 735 e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~ 814 (2191)
..+. . ......+..++.. .++++||||+|++.|+.++..|...
T Consensus 256 ~~~~-~---------------------~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~------------ 298 (1054)
T 1gku_B 256 DVAV-N---------------------DESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK------------ 298 (1054)
T ss_dssp EEEE-S---------------------CCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS------------
T ss_pred EEEe-c---------------------hhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc------------
Confidence 1111 0 1122233333322 2678999999999998887665320
Q ss_pred chhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEe----cccccccCCCCCc-e
Q 000107 815 SEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTA----TSTLAAGVNLPAR-R 889 (2191)
Q Consensus 815 ~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVA----TstLa~GVNLPav-~ 889 (2191)
..+.++||++ ..+++.|++|.++|||| |+++++|||+|++ +
T Consensus 299 -----------------------------~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~ 344 (1054)
T 1gku_B 299 -----------------------------FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIR 344 (1054)
T ss_dssp -----------------------------SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCC
T ss_pred -----------------------------cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCccc
Confidence 2388999998 47889999999999999 9999999999995 9
Q ss_pred EEeecCCC
Q 000107 890 VIFRQPRI 897 (2191)
Q Consensus 890 VVI~~p~~ 897 (2191)
+||+++.+
T Consensus 345 ~VI~~~~P 352 (1054)
T 1gku_B 345 FAVFVGCP 352 (1054)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 99887665
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=3.2e-29 Score=351.20 Aligned_cols=313 Identities=14% Similarity=0.239 Sum_probs=228.1
Q ss_pred HHHHHHH-HHcCCCCCCHHHHHhhhhccccc----CC--eEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHH
Q 000107 511 SEICSIY-KKRGISKLYPWQVECLHVDGVLQ----RR--NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSIC 583 (2191)
Q Consensus 511 ~~l~~~l-~~~Gi~~l~p~Q~eal~~~~il~----gk--nlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA 583 (2191)
....+.+ ...||+ ++|+|.+|++. ++. ++ ++++++|||+|||++|.++++..+ ..+++++|++||++||
T Consensus 590 ~~~~~~~~~~f~~~-~t~~Q~~ai~~--il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~-~~g~~vlvlvPt~~La 665 (1151)
T 2eyq_A 590 REQYQLFCDSFPFE-TTPDQAQAINA--VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLA 665 (1151)
T ss_dssp HHHHHHHHHTCCSC-CCHHHHHHHHH--HHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHH
T ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHH--HHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH-HhCCeEEEEechHHHH
Confidence 3444444 447885 79999999986 554 55 999999999999999998887754 4688999999999999
Q ss_pred HHHHHHHHHHhhccCCeEEEEeccCCCCC-------C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 584 AEKAEHLEVLLEPLGRHVRSYYGNQGGGS-------L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 584 ~q~~~~l~~l~~~lg~~V~~~~G~~~~~~-------l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.|+++.+.+++..++++|..+.|..+... + ....+|+|+||+.+ . ....+.++++|||||+|+++
T Consensus 666 ~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~---~~~~~~~l~lvIiDEaH~~g 738 (1151)
T 2eyq_A 666 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----Q---SDVKFKDLGLLIVDEEHRFG 738 (1151)
T ss_dssp HHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----H---SCCCCSSEEEEEEESGGGSC
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----h---CCccccccceEEEechHhcC
Confidence 99999999998888889988877543211 1 23589999999753 2 34568899999999999954
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc----cc-cccccc
Q 000107 656 DQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA----LY-ETNFRP 730 (2191)
Q Consensus 656 d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~----l~-~~~~Rp 730 (2191)
.....++..++ .+.++++||||+.. ..+...+... .+ ......
T Consensus 739 -----~~~~~~l~~l~--------------------------~~~~vl~lSATp~p-~~l~~~~~~~~~~~~i~~~~~~r 786 (1151)
T 2eyq_A 739 -----VRHKERIKAMR--------------------------ANVDILTLTATPIP-RTLNMAMSGMRDLSIIATPPARR 786 (1151)
T ss_dssp -----HHHHHHHHHHH--------------------------TTSEEEEEESSCCC-HHHHHHHTTTSEEEECCCCCCBC
T ss_pred -----hHHHHHHHHhc--------------------------CCCCEEEEcCCCCh-hhHHHHHhcCCCceEEecCCCCc
Confidence 33334444431 35799999999642 3333333211 01 111111
Q ss_pred ccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhccccc
Q 000107 731 VPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINV 810 (2191)
Q Consensus 731 vpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~ 810 (2191)
.++..++.. .+...+...+...+..+++++|||++++.++.++..|.+.++
T Consensus 787 ~~i~~~~~~-----------------------~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p------ 837 (1151)
T 2eyq_A 787 LAVKTFVRE-----------------------YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP------ 837 (1151)
T ss_dssp BCEEEEEEE-----------------------CCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCT------
T ss_pred cccEEEEec-----------------------CCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC------
Confidence 222222211 011122233333445688999999999999999988866431
Q ss_pred CCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceE
Q 000107 811 HSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRV 890 (2191)
Q Consensus 811 ~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~V 890 (2191)
..+|+.+||+|+..+|+.+++.|++|.++|||||+++++|||+|++++
T Consensus 838 --------------------------------~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~ 885 (1151)
T 2eyq_A 838 --------------------------------EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 885 (1151)
T ss_dssp --------------------------------TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEE
T ss_pred --------------------------------CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcE
Confidence 124899999999999999999999999999999999999999999988
Q ss_pred EeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 891 IFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 891 VI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
||.... +.++..+|.||+||+||.| ..|.||+++.+.
T Consensus 886 VIi~~~---~~~~l~~l~Qr~GRvgR~g--~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 886 IIIERA---DHFGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 922 (1151)
T ss_dssp EEETTT---TSSCHHHHHHHHTTCCBTT--BCEEEEEEECCG
T ss_pred EEEeCC---CCCCHHHHHHHHhccCcCC--CceEEEEEECCc
Confidence 774321 2246778999999999998 789999998764
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=2e-30 Score=342.54 Aligned_cols=292 Identities=16% Similarity=0.123 Sum_probs=209.3
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeE
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
...++|+|..+++. ++.++++|++||||||||++|.+++++.+...+.++||++|+++||.|+++.+. +..+
T Consensus 169 ~~~~lpiq~~~i~~--l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~------~~~v 240 (618)
T 2whx_A 169 ERIGEPDYEVDEDI--FRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR------GLPI 240 (618)
T ss_dssp CCCCCCCCCCCGGG--GSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCE
T ss_pred cccCCCccccCHHH--HhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc------CCce
Confidence 36778888777765 899999999999999999999999999988888899999999999999997765 3444
Q ss_pred EEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCC
Q 000107 602 RSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDS 681 (2191)
Q Consensus 602 ~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s 681 (2191)
. +.+.........+..+.++|.+.+.. .+.....+.++++|||||+|++ +.++...+..++..+..
T Consensus 241 ~-~~~~~l~~~~tp~~~i~~~t~~~l~~---~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~--------- 306 (618)
T 2whx_A 241 R-YQTPAVKSDHTGREIVDLMCHATFTT---RLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM--------- 306 (618)
T ss_dssp E-ECCTTSSCCCCSSSCEEEEEHHHHHH---HHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH---------
T ss_pred e-EecccceeccCCCceEEEEChHHHHH---HHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc---------
Confidence 4 22222111233456788889887544 3445567899999999999998 55566677777766521
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhhccC
Q 000107 682 SSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLG 761 (2191)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~ 761 (2191)
++.|+|+||||+++. +.. +...+.+.++ +.. . +..
T Consensus 307 ----------------~~~q~il~SAT~~~~--~~~-----~~~~~~~~~~----v~~--~-~~~--------------- 341 (618)
T 2whx_A 307 ----------------GEAAAIFMTATPPGS--TDP-----FPQSNSPIED----IER--E-IPE--------------- 341 (618)
T ss_dssp ----------------TSCEEEEECSSCTTC--CCS-----SCCCSSCEEE----EEC--C-CCS---------------
T ss_pred ----------------cCccEEEEECCCchh--hhh-----hhccCCceee----ecc--c-CCH---------------
Confidence 468999999998742 111 1111111111 110 0 000
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhh
Q 000107 762 GKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEET 841 (2191)
Q Consensus 762 ~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~ 841 (2191)
.....+... +...++++||||+|++.|+.++..|.+.
T Consensus 342 -~~~~~ll~~---l~~~~~~~LVF~~s~~~a~~l~~~L~~~--------------------------------------- 378 (618)
T 2whx_A 342 -RSWNTGFDW---ITDYQGKTVWFVPSIKAGNDIANCLRKS--------------------------------------- 378 (618)
T ss_dssp -SCCSSSCHH---HHHCCSCEEEECSSHHHHHHHHHHHHHT---------------------------------------
T ss_pred -HHHHHHHHH---HHhCCCCEEEEECChhHHHHHHHHHHHc---------------------------------------
Confidence 000111122 2234679999999999999999888542
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC----------------CCcccCcc
Q 000107 842 LPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI----------------GRDFIDGT 905 (2191)
Q Consensus 842 l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~----------------g~~~is~~ 905 (2191)
...+..+|+. +|..+++.|++|.++|||||+++++|||+| +++||++... ...+.+..
T Consensus 379 -g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~ 452 (618)
T 2whx_A 379 -GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPA 452 (618)
T ss_dssp -TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHH
T ss_pred -CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHH
Confidence 1127889984 788899999999999999999999999998 7777664330 01246888
Q ss_pred cccccccccCCCCCCCceEEEEEeC
Q 000107 906 RYRQMAGRAGRTGIDTKGESMLICK 930 (2191)
Q Consensus 906 ~y~QmiGRAGR~G~d~~Ge~ill~~ 930 (2191)
+|+||+|||||.|. ..|.||+++.
T Consensus 453 ~yiQR~GRaGR~g~-~~G~ai~l~~ 476 (618)
T 2whx_A 453 SAAQRRGRIGRNPA-QEDDQYVFSG 476 (618)
T ss_dssp HHHHHHTTSSCCTT-CCCEEEEECS
T ss_pred HHHHhccccCCCCC-CCCeEEEEcc
Confidence 99999999999972 4899999997
No 47
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=1.1e-29 Score=336.57 Aligned_cols=296 Identities=22% Similarity=0.274 Sum_probs=218.5
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCC--C
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP--K 615 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~--~ 615 (2191)
.+++++++++||||||||+.++.. +... +..+|++|+|+||.|+++++.++ |+.+..++|+...-... .
T Consensus 152 ~l~rk~vlv~apTGSGKT~~al~~----l~~~-~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~TpGr 222 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYHAIQK----YFSA-KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQPNGK 222 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHH----HHHS-SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCSTTCC
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHH----HHhc-CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEecCCCc
Confidence 468899999999999999944433 3333 45699999999999999998764 78888888875431111 2
Q ss_pred CCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000107 616 DTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKAD 695 (2191)
Q Consensus 616 ~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~ 695 (2191)
..+++++|++.+. ....+++|||||+|++++.+||..++.++..++
T Consensus 223 ~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~------------------------ 268 (677)
T 3rc3_A 223 QASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC------------------------ 268 (677)
T ss_dssp CCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC------------------------
T ss_pred ccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHccC------------------------
Confidence 3789999998642 356789999999999999999999988877662
Q ss_pred CCCCceEEEEeccCCCHHHHHHHhhcccc-ccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHH
Q 000107 696 PAHGLQIVGMSATMPNVAAVADWLQAALY-ETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDE 774 (2191)
Q Consensus 696 ~~~~iqII~mSATL~N~~~la~wL~a~l~-~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e 774 (2191)
...+|++++|||.+....+..+.+..+. ....|+.++... .... ..+
T Consensus 269 -~~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l~~~----~~~l---------------------~~l------ 316 (677)
T 3rc3_A 269 -AEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVL----DHAL---------------------ESL------ 316 (677)
T ss_dssp -EEEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSCEEEC----SSCC---------------------CSG------
T ss_pred -ccceEEEeccchHHHHHHHHHhcCCceEEEEeeecchHHHH----HHHH---------------------HHH------
Confidence 2568999999998777777766654321 222233332210 0000 000
Q ss_pred HHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCC
Q 000107 775 VVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLT 854 (2191)
Q Consensus 775 ~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs 854 (2191)
.......+|||+|++.|+.++..|.+. ..+|++|||+|+
T Consensus 317 -~~~~~g~iIf~~s~~~ie~la~~L~~~----------------------------------------g~~v~~lHG~L~ 355 (677)
T 3rc3_A 317 -DNLRPGDCIVCFSKNDIYSVSRQIEIR----------------------------------------GLESAVIYGSLP 355 (677)
T ss_dssp -GGCCTTEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCCEEECTTSC
T ss_pred -HhcCCCCEEEEcCHHHHHHHHHHHHhc----------------------------------------CCCeeeeeccCC
Confidence 011345589999999999888887541 235899999999
Q ss_pred HHHHHHHHHHhhc--CCceEEEecccccccCCCCCceEEeecCCC-------C---CcccCcccccccccccCCCCCC-C
Q 000107 855 VEEREVVETCYRK--GLVRVLTATSTLAAGVNLPARRVIFRQPRI-------G---RDFIDGTRYRQMAGRAGRTGID-T 921 (2191)
Q Consensus 855 ~~eR~~Ve~~Fr~--G~ikVLVATstLa~GVNLPav~VVI~~p~~-------g---~~~is~~~y~QmiGRAGR~G~d-~ 921 (2191)
+++|..+++.|++ |.++|||||+++++|||+ .+++||++... | ..+++..+|+||+|||||.|.+ .
T Consensus 356 ~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~ 434 (677)
T 3rc3_A 356 PGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFK 434 (677)
T ss_dssp HHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCS
T ss_pred HHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCC
Confidence 9999999999999 999999999999999999 67777765542 1 1278899999999999999965 4
Q ss_pred ceEEEEEeChhhHHHHHhhhccCCCCcccc
Q 000107 922 KGESMLICKPEEVKKIMGLLNESCPPLHSC 951 (2191)
Q Consensus 922 ~Ge~ill~~~~e~~~~~~ll~~~l~~l~S~ 951 (2191)
.|.|++++.. +...+.+++....+++.+.
T Consensus 435 ~G~v~~l~~~-d~~~~~~~~~~~~~~i~~~ 463 (677)
T 3rc3_A 435 EGEVTTMNHE-DLSLLKEILKRPVDPIRAA 463 (677)
T ss_dssp SEEEEESSTT-HHHHHHHHHHSCCCCCCCE
T ss_pred CEEEEEEecc-hHHHHHHHHhcCcchhhhc
Confidence 6888887755 4456677888888887764
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=7.5e-30 Score=332.16 Aligned_cols=323 Identities=15% Similarity=0.175 Sum_probs=215.5
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEE
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVR 602 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~ 602 (2191)
.+|+|+|.++++. ++.++++++++|||+|||++|.+++...+...++++|||+|+++|+.|+++++.++....+..+.
T Consensus 112 ~~l~~~Q~~ai~~--~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFE--GLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHH--HHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCHHHHHHHHH--HHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 4899999999987 78889999999999999999998888777655569999999999999999999887544456788
Q ss_pred EEeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCC
Q 000107 603 SYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDS 681 (2191)
Q Consensus 603 ~~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s 681 (2191)
.++|+.... ......+|+|+||+.+ ++. ....+.++++|||||+|.+.. ..++.++..+
T Consensus 190 ~~~~~~~~~~~~~~~~~I~i~T~~~l---~~~--~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~----------- 249 (510)
T 2oca_A 190 KIGGGASKDDKYKNDAPVVVGTWQTV---VKQ--PKEWFSQFGMMMNDECHLATG----KSISSIISGL----------- 249 (510)
T ss_dssp ECGGGCCTTGGGCTTCSEEEEEHHHH---TTS--CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGC-----------
T ss_pred EEecCCccccccccCCcEEEEeHHHH---hhc--hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhc-----------
Confidence 777775432 1235689999999964 222 224578899999999999865 2233332222
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeccCCCH----HHHHHHhhccccccccc-------cccceEE---EEeccccccc-
Q 000107 682 SSGENSGTSSGKADPAHGLQIVGMSATMPNV----AAVADWLQAALYETNFR-------PVPLEEY---IKVGNAIYSK- 746 (2191)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~iqII~mSATL~N~----~~la~wL~a~l~~~~~R-------pvpL~e~---i~~~~~~~~~- 746 (2191)
....++++||||+++. ..+..+++...+..... ..+.... +.........
T Consensus 250 ---------------~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 314 (510)
T 2oca_A 250 ---------------NNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKL 314 (510)
T ss_dssp ---------------TTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHH
T ss_pred ---------------ccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccc
Confidence 2456999999998642 23344454433221111 0011100 0000000000
Q ss_pred h-hhHHHHHHHhhccCCCChhHHHHHHHHHHhcC-CcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHH
Q 000107 747 K-MDVVRTILTAANLGGKDPDHIVELCDEVVQEG-HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAI 824 (2191)
Q Consensus 747 ~-~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g-~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 824 (2191)
. ......+..... .......+..++......+ .++||||+ .+.|+.++..|.+. +
T Consensus 315 ~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~----~----------------- 371 (510)
T 2oca_A 315 KGKTYQEEIKIITG-LSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE----Y----------------- 371 (510)
T ss_dssp TTCCHHHHHHHHHT-CHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT----C-----------------
T ss_pred cccchHHHHHHHhc-cHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc----C-----------------
Confidence 0 000000111000 0112233455555555444 45566666 77777666555321 0
Q ss_pred HHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEec-ccccccCCCCCceEEeecCCCCCcccC
Q 000107 825 DALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTAT-STLAAGVNLPARRVIFRQPRIGRDFID 903 (2191)
Q Consensus 825 ~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVAT-stLa~GVNLPav~VVI~~p~~g~~~is 903 (2191)
..|.++||+++..+|..+++.|++|.++||||| +++++|||+|++++||....+ .+
T Consensus 372 -------------------~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~----~s 428 (510)
T 2oca_A 372 -------------------DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGV----KS 428 (510)
T ss_dssp -------------------SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCC----CS
T ss_pred -------------------CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCC----CC
Confidence 138899999999999999999999999999999 999999999999999876554 37
Q ss_pred cccccccccccCCCCCCCceEEEEEeC
Q 000107 904 GTRYRQMAGRAGRTGIDTKGESMLICK 930 (2191)
Q Consensus 904 ~~~y~QmiGRAGR~G~d~~Ge~ill~~ 930 (2191)
...|.||+||+||.| ..|.++++++
T Consensus 429 ~~~~~Q~~GR~gR~g--~~~~~v~i~~ 453 (510)
T 2oca_A 429 KIIVLQTIGRVLRKH--GSKTIATVWD 453 (510)
T ss_dssp CCHHHHHHHHHHTTT--CCCCCCEEEE
T ss_pred HHHHHHHHhcccccC--CCCceEEEEE
Confidence 889999999999999 3443444443
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=5.3e-30 Score=337.05 Aligned_cols=344 Identities=16% Similarity=0.162 Sum_probs=231.0
Q ss_pred HcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 519 KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 519 ~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
..|| +|||+|..+++. ++.|+ |..++||+|||++|.+|++...+ .|+.++||+|+++||.|.++++..++..+|
T Consensus 79 ~lG~-~pt~VQ~~~ip~--ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-~g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVA--LHDGN--IAEMKTGEGKTLTSTLPVYLNAL-TGKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHH--HHTTS--EEECCTTSCHHHHHHHHHHHHHT-TSSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHH--HhCCC--EEEccCCcHHHHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 5899 999999999987 88888 99999999999999999985544 477899999999999999999999999999
Q ss_pred CeEEEEeccCCCCC--CCCCCceEEEchHHH-HHHHHHhh----hcCCCCccceEEEccccccc-ccchh----------
Q 000107 599 RHVRSYYGNQGGGS--LPKDTSVAVCTIEKA-NSLVNRML----EEGRLSEIGIIVIDELHMVA-DQNRG---------- 660 (2191)
Q Consensus 599 ~~V~~~~G~~~~~~--l~~~~~IiV~TpEkl-~~Ll~~l~----~~~~L~~l~lVVIDEaH~l~-d~~RG---------- 660 (2191)
++|..++|+..... ...+++|+|+||+++ .++++..+ ....++.+.++||||+|.|. |..|.
T Consensus 153 l~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~ 232 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAK 232 (844)
T ss_dssp CCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEEC
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCccc
Confidence 99999998754211 112479999999998 66665433 23457889999999999987 65443
Q ss_pred -----HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEE-----------------EEeccCCC-HHHHHH
Q 000107 661 -----YLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIV-----------------GMSATMPN-VAAVAD 717 (2191)
Q Consensus 661 -----~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII-----------------~mSATL~N-~~~la~ 717 (2191)
..+..++..+. . + .++. ......|+. ++|||++. ...+..
T Consensus 233 ~~~~~~~i~~iv~~l~----~---~-~~y~---------vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~ 295 (844)
T 1tf5_A 233 STKLYVQANAFVRTLK----A---E-KDYT---------YDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQ 295 (844)
T ss_dssp CCHHHHHHHHHHTTCC----S---S-SSBC---------CCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHhCc----c---c-ccce---------eccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHH
Confidence 22333332221 0 0 0000 011344555 78898642 223322
Q ss_pred Hhhcc-ccccc-----------------ccc-------------------ccceE-EE---Eeccc----ccc-------
Q 000107 718 WLQAA-LYETN-----------------FRP-------------------VPLEE-YI---KVGNA----IYS------- 745 (2191)
Q Consensus 718 wL~a~-l~~~~-----------------~Rp-------------------vpL~e-~i---~~~~~----~~~------- 745 (2191)
.|.+. ++..+ .|. +.+.. .. .+... .|.
T Consensus 296 al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTG 375 (844)
T 1tf5_A 296 ALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTG 375 (844)
T ss_dssp HHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEES
T ss_pred HHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCc
Confidence 22221 11100 000 00000 00 00000 000
Q ss_pred ---chhhHHHHHHHh------hcc-----------CCC---ChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHH
Q 000107 746 ---KKMDVVRTILTA------ANL-----------GGK---DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKF 802 (2191)
Q Consensus 746 ---~~~~~~r~l~~~------~~~-----------~~~---d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~ 802 (2191)
........++.. ... -.. +...+..++.+....+.++||||+|+..|+.++..|.+.
T Consensus 376 Ta~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~ 455 (844)
T 1tf5_A 376 TAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK 455 (844)
T ss_dssp CCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT
T ss_pred ccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC
Confidence 000111111100 000 001 122344445444456789999999999999988877531
Q ss_pred HhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEeccccccc
Q 000107 803 LKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAG 882 (2191)
Q Consensus 803 l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~G 882 (2191)
+ ..+..+||++...+|..+.++|+.| .|+|||++++||
T Consensus 456 ----g------------------------------------i~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG 493 (844)
T 1tf5_A 456 ----G------------------------------------IPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRG 493 (844)
T ss_dssp ----T------------------------------------CCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTT
T ss_pred ----C------------------------------------CCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccC
Confidence 1 1256699999999999888888877 699999999999
Q ss_pred CCCC--------CceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 883 VNLP--------ARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 883 VNLP--------av~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
+||+ +..+||++..+. +...|.||+||+||.| .+|.++.|++.++
T Consensus 494 ~DI~l~~~V~~~ggl~VIn~d~p~----s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD 546 (844)
T 1tf5_A 494 TDIKLGEGVKELGGLAVVGTERHE----SRRIDNQLRGRSGRQG--DPGITQFYLSMED 546 (844)
T ss_dssp CCCCCCTTSGGGTSEEEEESSCCS----SHHHHHHHHTTSSGGG--CCEEEEEEEETTS
T ss_pred cCccccchhhhcCCcEEEEecCCC----CHHHHHhhcCccccCC--CCCeEEEEecHHH
Confidence 9999 788999988876 8889999999999999 8999999987644
No 50
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=3.4e-29 Score=322.80 Aligned_cols=306 Identities=17% Similarity=0.230 Sum_probs=210.9
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCe-EE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRH-VR 602 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~-V~ 602 (2191)
+|+|+|.++++. ++.++++++++|||+|||++|..++... ++++|||+|+++|+.|+++++.+ +|.. |.
T Consensus 93 ~l~~~Q~~ai~~--i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~----~~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALER--WLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI----FGEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHH--HTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGG----GCGGGEE
T ss_pred CcCHHHHHHHHH--HHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHh----CCCcceE
Confidence 799999999986 8888899999999999999998887753 78999999999999999988876 3777 88
Q ss_pred EEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCC
Q 000107 603 SYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSS 682 (2191)
Q Consensus 603 ~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~ 682 (2191)
.++|+.. ...+|+|+||+.+...+..+ ..++++|||||+|.+.+..+.. ++..+
T Consensus 163 ~~~g~~~-----~~~~Ivv~T~~~l~~~~~~~-----~~~~~liIvDEaH~~~~~~~~~----~~~~~------------ 216 (472)
T 2fwr_A 163 EFSGRIK-----ELKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAESYVQ----IAQMS------------ 216 (472)
T ss_dssp EBSSSCB-----CCCSEEEEEHHHHHHTHHHH-----TTTCSEEEEETGGGTTSTTTHH----HHHTC------------
T ss_pred EECCCcC-----CcCCEEEEEcHHHHHHHHHh-----cCCCCEEEEECCcCCCChHHHH----HHHhc------------
Confidence 7777543 34689999999976655432 2458999999999998765432 22111
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeccCCCH----HHHHHHhhccccccccccc------cc---eEEEEeccc---cccc
Q 000107 683 SGENSGTSSGKADPAHGLQIVGMSATMPNV----AAVADWLQAALYETNFRPV------PL---EEYIKVGNA---IYSK 746 (2191)
Q Consensus 683 ~~~~~~~~~~~~~~~~~iqII~mSATL~N~----~~la~wL~a~l~~~~~Rpv------pL---~e~i~~~~~---~~~~ 746 (2191)
...++|+||||+.+. ..+..+++...+......+ +. ...+..... .|..
T Consensus 217 ---------------~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 281 (472)
T 2fwr_A 217 ---------------IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEK 281 (472)
T ss_dssp ---------------CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTT
T ss_pred ---------------CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHH
Confidence 346899999998632 2355555544332211111 00 001110000 0000
Q ss_pred hhhHH-------------------------------------HHHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCch
Q 000107 747 KMDVV-------------------------------------RTILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSR 789 (2191)
Q Consensus 747 ~~~~~-------------------------------------r~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr 789 (2191)
..... ................+..++.+ ..++++||||+++
T Consensus 282 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~ 359 (472)
T 2fwr_A 282 REKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHN 359 (472)
T ss_dssp TTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCH
T ss_pred HHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCH
Confidence 00000 00000000001111233333333 2468999999999
Q ss_pred hHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCC
Q 000107 790 KGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL 869 (2191)
Q Consensus 790 ~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ 869 (2191)
+.++.++..|. +..+||+++..+|..+++.|++|.
T Consensus 360 ~~~~~l~~~l~---------------------------------------------~~~~~g~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 360 ELVYRISKVFL---------------------------------------------IPAITHRTSREEREEILEGFRTGR 394 (472)
T ss_dssp HHHHHHHHHTT---------------------------------------------CCBCCSSSCSHHHHTHHHHHHHSS
T ss_pred HHHHHHHHHhC---------------------------------------------cceeeCCCCHHHHHHHHHHHhCCC
Confidence 98887765541 345899999999999999999999
Q ss_pred ceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCC-CceEEEEEeCh
Q 000107 870 VRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGID-TKGESMLICKP 931 (2191)
Q Consensus 870 ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d-~~Ge~ill~~~ 931 (2191)
++|||||+++++|+|+|++++||....+. +...|.||+|||||.|.+ ....+|.++..
T Consensus 395 ~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~----s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 395 FRAIVSSQVLDEGIDVPDANVGVIMSGSG----SAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CSBCBCSSCCCSSSCSCCBSEEEEECCSS----CCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred CCEEEEcCchhcCcccccCcEEEEECCCC----CHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999998765543 788999999999999954 45566666654
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.96 E-value=4.7e-29 Score=320.29 Aligned_cols=281 Identities=17% Similarity=0.155 Sum_probs=187.9
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
.+..++++|++||||||||++|.+++++.+...+.++||++|+++||.|+++.+. |..+....+.... ...++
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~-~~t~~ 89 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQR-EHQGN 89 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT------TSCEEECC---------CC
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc------CceEeEEeccccc-CCCCC
Confidence 3677999999999999999999999999888888999999999999999998775 4444332222111 11234
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCC
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADP 696 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~ 696 (2191)
..+.++|.+.+ .+++.....+.++++|||||+|++. ......+..+.....
T Consensus 90 ~~i~~~~~~~l---~~~l~~~~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~------------------------- 140 (459)
T 2z83_A 90 EIVDVMCHATL---THRLMSPNRVPNYNLFVMDEAHFTD-PASIAARGYIATKVE------------------------- 140 (459)
T ss_dssp CSEEEEEHHHH---HHHHHSCC-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHH-------------------------
T ss_pred cEEEEEchHHH---HHHhhccccccCCcEEEEECCccCC-chhhHHHHHHHHHhc-------------------------
Confidence 56788898874 4445556678999999999999852 112222222222221
Q ss_pred CCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH
Q 000107 697 AHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV 776 (2191)
Q Consensus 697 ~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~ 776 (2191)
.++.|+|+||||++.. + ..+... ..|+.. +. ...... ....+..++.
T Consensus 141 ~~~~~~il~SAT~~~~--~------~~~~~~--~~pi~~-~~--~~~~~~-----------------~~~~~~~~l~--- 187 (459)
T 2z83_A 141 LGEAAAIFMTATPPGT--T------DPFPDS--NAPIHD-LQ--DEIPDR-----------------AWSSGYEWIT--- 187 (459)
T ss_dssp TTSCEEEEECSSCTTC--C------CSSCCC--SSCEEE-EE--CCCCSS-----------------CCSSCCHHHH---
T ss_pred cCCccEEEEEcCCCcc--h------hhhccC--CCCeEE-ec--ccCCcc-----------------hhHHHHHHHH---
Confidence 2468999999998741 0 011111 112211 11 000000 0001111222
Q ss_pred hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHH
Q 000107 777 QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVE 856 (2191)
Q Consensus 777 ~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~ 856 (2191)
..++++||||+|++.|+.++..|... ...+..+|+.
T Consensus 188 ~~~~~~LVF~~s~~~~~~l~~~L~~~----------------------------------------g~~v~~lh~~---- 223 (459)
T 2z83_A 188 EYAGKTVWFVASVKMGNEIAMCLQRA----------------------------------------GKKVIQLNRK---- 223 (459)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHT----------------------------------------TCCEEEESTT----
T ss_pred hcCCCEEEEeCChHHHHHHHHHHHhc----------------------------------------CCcEEecCHH----
Confidence 24689999999999999998887542 1227788984
Q ss_pred HHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC----------------CCcccCcccccccccccCCCCCC
Q 000107 857 EREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI----------------GRDFIDGTRYRQMAGRAGRTGID 920 (2191)
Q Consensus 857 eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~----------------g~~~is~~~y~QmiGRAGR~G~d 920 (2191)
+|..+++.|++|.++|||||+++++|||+|+ ++||+.... ...+.+..+|+||+|||||.|.
T Consensus 224 ~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~- 301 (459)
T 2z83_A 224 SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN- 301 (459)
T ss_dssp CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT-
T ss_pred HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCC-
Confidence 7889999999999999999999999999999 888873300 1245688999999999999982
Q ss_pred CceEEEEEeChh
Q 000107 921 TKGESMLICKPE 932 (2191)
Q Consensus 921 ~~Ge~ill~~~~ 932 (2191)
..|.|++++.+.
T Consensus 302 ~~G~~~~~~~~~ 313 (459)
T 2z83_A 302 QVGDEYHYGGAT 313 (459)
T ss_dssp CCCEEEEECSCC
T ss_pred CCCeEEEEEccc
Confidence 289999998764
No 52
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=6.1e-29 Score=317.44 Aligned_cols=278 Identities=18% Similarity=0.141 Sum_probs=177.4
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
.+++|+|++++||||||||++|++++++.+...+.+++|++||++||.|+++.+.. +.+....+... ....++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~------~~v~~~~~~~~-~v~Tp~ 76 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG------LDVKFHTQAFS-AHGSGR 76 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT------SCEEEESSCCC-CCCCSS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhc------CCeEEecccce-eccCCc
Confidence 36789999999999999999999999998888888999999999999999987752 23332211110 001111
Q ss_pred CceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCC
Q 000107 617 TSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADP 696 (2191)
Q Consensus 617 ~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~ 696 (2191)
.-+-+.+.+. +..++.....+.++++|||||+|++ +..+...+..+...+.
T Consensus 77 ~l~~~l~~~~---l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~------------------------- 127 (440)
T 1yks_A 77 EVIDAMCHAT---LTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR------------------------- 127 (440)
T ss_dssp CCEEEEEHHH---HHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH-------------------------
T ss_pred cceeeecccc---hhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc-------------------------
Confidence 1222333333 2334445556899999999999998 3333333333333221
Q ss_pred CCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHH
Q 000107 697 AHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVV 776 (2191)
Q Consensus 697 ~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~ 776 (2191)
..+.|+|+||||++.. +.. +.. . +.++.. +... ... .....+.. .+.
T Consensus 128 ~~~~~~l~~SAT~~~~--~~~-----~~~-~--~~~~~~-~~~~--~~~-----------------~~~~~~~~---~l~ 174 (440)
T 1yks_A 128 ANESATILMTATPPGT--SDE-----FPH-S--NGEIED-VQTD--IPS-----------------EPWNTGHD---WIL 174 (440)
T ss_dssp TTSCEEEEECSSCTTC--CCS-----SCC-C--SSCEEE-EECC--CCS-----------------SCCSSSCH---HHH
T ss_pred cCCceEEEEeCCCCch--hhh-----hhh-c--CCCeeE-eeec--cCh-----------------HHHHHHHH---HHH
Confidence 2468999999998631 000 111 1 111111 1100 000 00001111 122
Q ss_pred hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHH
Q 000107 777 QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVE 856 (2191)
Q Consensus 777 ~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~ 856 (2191)
..++++||||++++.|+.++..|.+. ...|..+|| +
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~----------------------------------------~~~v~~lhg----~ 210 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKA----------------------------------------GKSVVVLNR----K 210 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHT----------------------------------------TCCEEECCS----S
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHc----------------------------------------CCCEEEecc----h
Confidence 35789999999999999998887541 123888999 5
Q ss_pred HHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC---------------CCCcccCcccccccccccCCCCCCC
Q 000107 857 EREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR---------------IGRDFIDGTRYRQMAGRAGRTGIDT 921 (2191)
Q Consensus 857 eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~---------------~g~~~is~~~y~QmiGRAGR~G~d~ 921 (2191)
+|..+++.|++|.++|||||+++++|||+| +++||++.. ....+.+..+|.||+|||||.| ..
T Consensus 211 ~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g-~~ 288 (440)
T 1yks_A 211 TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP-NR 288 (440)
T ss_dssp SCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT-TC
T ss_pred hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCC-CC
Confidence 789999999999999999999999999999 888886221 0122468889999999999984 26
Q ss_pred ceEEEEEe
Q 000107 922 KGESMLIC 929 (2191)
Q Consensus 922 ~Ge~ill~ 929 (2191)
.|.||+++
T Consensus 289 ~g~~~~l~ 296 (440)
T 1yks_A 289 DGDSYYYS 296 (440)
T ss_dssp CCEEEEEC
T ss_pred CceEEEEe
Confidence 89999996
No 53
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=2.2e-29 Score=334.51 Aligned_cols=289 Identities=16% Similarity=0.132 Sum_probs=194.2
Q ss_pred CCCHHHH-----Hhhhhcccc------cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHH
Q 000107 524 KLYPWQV-----ECLHVDGVL------QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 524 ~l~p~Q~-----eal~~~~il------~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
.|+++|. ++|+. ++ .++|+|++||||||||++|++++++.+...+.++||++||++||.|+++.+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~--~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPE--AYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CC--CCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHH--HhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc
Confidence 8899999 89875 55 89999999999999999999999998888888999999999999999987753
Q ss_pred HhhccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHH
Q 000107 593 LLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRY 672 (2191)
Q Consensus 593 l~~~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~ 672 (2191)
+ ++. ...+... ....++.-+-+++.+. +.++++....+.++++|||||+|++. ......+..+...+
T Consensus 293 ~----~i~--~~~~~l~-~v~tp~~ll~~l~~~~---l~~~l~~~~~l~~l~lvViDEaH~~~-~~~~~~~~~l~~~~-- 359 (673)
T 2wv9_A 293 L----PVR--YLTPAVQ-REHSGNEIVDVMCHAT---LTHRLMSPLRVPNYNLFVMDEAHFTD-PASIAARGYIATRV-- 359 (673)
T ss_dssp S----CCE--ECCC----CCCCSCCCEEEEEHHH---HHHHHHSSSCCCCCSEEEEESTTCCC-HHHHHHHHHHHHHH--
T ss_pred C----Cee--eeccccc-ccCCHHHHHHHHHhhh---hHHHHhcccccccceEEEEeCCcccC-ccHHHHHHHHHHhc--
Confidence 2 322 1111100 0112233445555554 34455555678999999999999982 11122222222222
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHH
Q 000107 673 AAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVR 752 (2191)
Q Consensus 673 ~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r 752 (2191)
. ....|+|+||||++.. + .-+... ..|+..... ....
T Consensus 360 --~---------------------~~~~~vl~~SAT~~~~--i------~~~~~~--~~~i~~v~~---~~~~------- 396 (673)
T 2wv9_A 360 --E---------------------AGEAAAIFMTATPPGT--S------DPFPDT--NSPVHDVSS---EIPD------- 396 (673)
T ss_dssp --H---------------------TTSCEEEEECSSCTTC--C------CSSCCC--SSCEEEEEC---CCCS-------
T ss_pred --c---------------------ccCCcEEEEcCCCChh--h------hhhccc--CCceEEEee---ecCH-------
Confidence 1 2468999999998631 0 001111 122211110 0000
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCC
Q 000107 753 TILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPA 832 (2191)
Q Consensus 753 ~l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 832 (2191)
.....+. ..+...++++||||++++.|+.++..|.+.
T Consensus 397 ----------~~~~~~l---~~l~~~~~~~lVF~~s~~~~e~la~~L~~~------------------------------ 433 (673)
T 2wv9_A 397 ----------RAWSSGF---EWITDYAGKTVWFVASVKMSNEIAQCLQRA------------------------------ 433 (673)
T ss_dssp ----------SCCSSCC---HHHHSCCSCEEEECSSHHHHHHHHHHHHTT------------------------------
T ss_pred ----------HHHHHHH---HHHHhCCCCEEEEECCHHHHHHHHHHHHhC------------------------------
Confidence 0000111 122335789999999999999888777431
Q ss_pred CCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC-------------C--
Q 000107 833 GLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR-------------I-- 897 (2191)
Q Consensus 833 gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~-------------~-- 897 (2191)
...|..+|| ++|..+++.|++|.++|||||+++++|||+| +.+||++.. +
T Consensus 434 ----------g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~l 498 (673)
T 2wv9_A 434 ----------GKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVIL 498 (673)
T ss_dssp ----------TCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEE
T ss_pred ----------CCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeeccccccee
Confidence 123888999 3899999999999999999999999999999 888887431 1
Q ss_pred -CCcccCcccccccccccCCCCCCCceEEEEEe
Q 000107 898 -GRDFIDGTRYRQMAGRAGRTGIDTKGESMLIC 929 (2191)
Q Consensus 898 -g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~ 929 (2191)
...+.+..+|.||+|||||.| ...|.||+++
T Consensus 499 l~d~P~s~~~y~Qr~GRaGR~~-g~~G~ai~l~ 530 (673)
T 2wv9_A 499 SVPSAITSASAAQRRGRVGRNP-SQIGDEYHYG 530 (673)
T ss_dssp CCSEECCHHHHHHHHTTSSCCS-SCCCEEEEEC
T ss_pred cccCCCCHHHHHHHhhccCCCC-CCCCEEEEEE
Confidence 123467889999999999993 2689999996
No 54
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=1.3e-28 Score=322.93 Aligned_cols=356 Identities=19% Similarity=0.168 Sum_probs=214.0
Q ss_pred HHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 518 KKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 518 ~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
+..|. +|||+|..+++. ++.|+ |..++||+|||++|.+|++...+ .|..++|++||++||.|.++++..++..+
T Consensus 69 R~lg~-~p~~VQ~~~i~~--ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-~g~~vlVltPTreLA~Q~~e~~~~l~~~l 142 (853)
T 2fsf_A 69 RVFGM-RHFDVQLLGGMV--LNERC--IAEMRTGEGKTLTATLPAYLNAL-TGKGVHVVTVNDYLAQRDAENNRPLFEFL 142 (853)
T ss_dssp HHHSC-CCCHHHHHHHHH--HHSSE--EEECCTTSCHHHHHHHHHHHHHT-TSSCCEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHcCC-CCChHHHhhccc--ccCCe--eeeecCCchHHHHHHHHHHHHHH-cCCcEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 34675 899999999987 88887 99999999999999999986554 47789999999999999999999999999
Q ss_pred CCeEEEEeccCCCC--CCCCCCceEEEchHHH-HHHHHHhh----hcCCCCccceEEEccccccc-ccch----------
Q 000107 598 GRHVRSYYGNQGGG--SLPKDTSVAVCTIEKA-NSLVNRML----EEGRLSEIGIIVIDELHMVA-DQNR---------- 659 (2191)
Q Consensus 598 g~~V~~~~G~~~~~--~l~~~~~IiV~TpEkl-~~Ll~~l~----~~~~L~~l~lVVIDEaH~l~-d~~R---------- 659 (2191)
|++|..++|+.... ....+++|+|+||+++ .++++..+ ....++.+.++||||+|.|. |.++
T Consensus 143 gl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 143 GLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 99999999976421 1112479999999998 67776532 23457899999999999987 5443
Q ss_pred -----hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEE------------------------EEeccCC
Q 000107 660 -----GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIV------------------------GMSATMP 710 (2191)
Q Consensus 660 -----G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII------------------------~mSATL~ 710 (2191)
...+..++..+..-.. ...++.... .+.....+..|++ ++|||.+
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~-----~~~~~~~~~-~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEK-----EDSETFQGE-GHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhc-----ccccccccc-ccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 2344555555521000 000000000 0000000112221 7899865
Q ss_pred C-HHHHHHHhhcc-cccc-----------------ccc-------------cccceEEEEecccc----------cc---
Q 000107 711 N-VAAVADWLQAA-LYET-----------------NFR-------------PVPLEEYIKVGNAI----------YS--- 745 (2191)
Q Consensus 711 N-~~~la~wL~a~-l~~~-----------------~~R-------------pvpL~e~i~~~~~~----------~~--- 745 (2191)
. ...+...|.+. +|.. ..| ++..++.+.+.... |.
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 3 12221111111 0100 000 11111112111100 00
Q ss_pred -----------chhhHHHHHHHh-------------------hccC-CCChhHHHHHHHHHHhcCCcEEEEeCchhHHHH
Q 000107 746 -----------KKMDVVRTILTA-------------------ANLG-GKDPDHIVELCDEVVQEGHSVLIFCSSRKGCES 794 (2191)
Q Consensus 746 -----------~~~~~~r~l~~~-------------------~~~~-~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~ 794 (2191)
........++.. .... ..+...+..++.+....+.++||||+|+..++.
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~ 456 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSEL 456 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHH
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 000111111100 0000 011223444554445567899999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEE
Q 000107 795 TARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLT 874 (2191)
Q Consensus 795 lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLV 874 (2191)
++..|.+. ++ .+..+||++...+|.+|.++|+.| .|+|
T Consensus 457 Ls~~L~~~----gi------------------------------------~~~vLnak~~~rEa~iia~agr~G--~VtI 494 (853)
T 2fsf_A 457 VSNELTKA----GI------------------------------------KHNVLNAKFHANEAAIVAQAGYPA--AVTI 494 (853)
T ss_dssp HHHHHHHT----TC------------------------------------CCEECCTTCHHHHHHHHHTTTSTT--CEEE
T ss_pred HHHHHHHC----CC------------------------------------CEEEecCChhHHHHHHHHhcCCCC--eEEE
Confidence 98887552 11 155689999999999999999999 6999
Q ss_pred ecccccccCCCCCc-------------------------------------eEEeecCCCCCcccCcccccccccccCCC
Q 000107 875 ATSTLAAGVNLPAR-------------------------------------RVIFRQPRIGRDFIDGTRYRQMAGRAGRT 917 (2191)
Q Consensus 875 ATstLa~GVNLPav-------------------------------------~VVI~~p~~g~~~is~~~y~QmiGRAGR~ 917 (2191)
||++++||+||+.. .+||++.++. +...|.||+||+||.
T Consensus 495 ATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pe----s~riy~qr~GRTGRq 570 (853)
T 2fsf_A 495 ATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHE----SRRIDNQLRGRSGRQ 570 (853)
T ss_dssp EESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCS----SHHHHHHHHTTSSGG
T ss_pred ecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCC----CHHHHHhhccccccC
Confidence 99999999999973 6899988876 788899999999999
Q ss_pred CCCCceEEEEEeChhh
Q 000107 918 GIDTKGESMLICKPEE 933 (2191)
Q Consensus 918 G~d~~Ge~ill~~~~e 933 (2191)
| .+|.++.|++.++
T Consensus 571 G--d~G~s~~fls~eD 584 (853)
T 2fsf_A 571 G--DAGSSRFYLSMED 584 (853)
T ss_dssp G--CCEEEEEEEETTS
T ss_pred C--CCeeEEEEecccH
Confidence 9 8999999987654
No 55
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=1e-28 Score=323.37 Aligned_cols=282 Identities=21% Similarity=0.166 Sum_probs=193.1
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS 603 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~ 603 (2191)
.++++|.+++.. +..+++++++||||||||+++.+++++ .+.++||++|+|+||.|+++++.+.+ +..+..
T Consensus 217 P~~~~q~~i~~~--L~~~~~vlv~ApTGSGKT~a~~l~ll~----~g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAV--PQSFQVAHLHAPTGSGKSTKVPAAYAA----QGYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCC--CSSCEEEEEECCTTSCTTTHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHH--HHcCCeEEEEeCCchhHHHHHHHHHHH----CCCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 456667666654 778999999999999999999988876 57799999999999999998776554 556666
Q ss_pred EeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCC
Q 000107 604 YYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSS 683 (2191)
Q Consensus 604 ~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~ 683 (2191)
.+|+.. ...+.+|+|+||+++ ++. ....++++++|||||+|++.. ++...+..++..+..
T Consensus 288 ~vG~~~---~~~~~~IlV~TPGrL---l~~--~~l~l~~l~~lVlDEAH~l~~-~~~~~l~~Il~~l~~----------- 347 (666)
T 3o8b_A 288 RTGVRT---ITTGAPVTYSTYGKF---LAD--GGCSGGAYDIIICDECHSTDS-TTILGIGTVLDQAET----------- 347 (666)
T ss_dssp ECSSCE---ECCCCSEEEEEHHHH---HHT--TSCCTTSCSEEEETTTTCCSH-HHHHHHHHHHHHTTT-----------
T ss_pred EECcEe---ccCCCCEEEECcHHH---HhC--CCcccCcccEEEEccchhcCc-cHHHHHHHHHHhhhh-----------
Confidence 666542 456789999999996 332 344677899999999998643 344444444444311
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCC
Q 000107 684 GENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGK 763 (2191)
Q Consensus 684 ~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~ 763 (2191)
.....+++||||+++. +.. +.|....+..... ...... . .. .
T Consensus 348 -------------~~~~llil~SAT~~~~-----------i~~---~~p~i~~v~~~~~---~~i~~~----~-~~---~ 389 (666)
T 3o8b_A 348 -------------AGARLVVLATATPPGS-----------VTV---PHPNIEEVALSNT---GEIPFY----G-KA---I 389 (666)
T ss_dssp -------------TTCSEEEEEESSCTTC-----------CCC---CCTTEEEEECBSC---SSEEET----T-EE---E
T ss_pred -------------cCCceEEEECCCCCcc-----------ccc---CCcceEEEeeccc---chhHHH----H-hh---h
Confidence 1233578899999861 111 1111111111100 000000 0 00 0
Q ss_pred ChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcC
Q 000107 764 DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLP 843 (2191)
Q Consensus 764 d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~ 843 (2191)
.. ....++++||||+|++.|+.++..|.+. .
T Consensus 390 ~l---------~~~~~~~vLVFv~Tr~~ae~la~~L~~~----------------------------------------g 420 (666)
T 3o8b_A 390 PI---------EAIRGGRHLIFCHSKKKCDELAAKLSGL----------------------------------------G 420 (666)
T ss_dssp CG---------GGSSSSEEEEECSCHHHHHHHHHHHHTT----------------------------------------T
T ss_pred hh---------hhccCCcEEEEeCCHHHHHHHHHHHHhC----------------------------------------C
Confidence 00 0114689999999999999998887531 1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEee----------cC---CCCC----cccCccc
Q 000107 844 SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR----------QP---RIGR----DFIDGTR 906 (2191)
Q Consensus 844 ~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~----------~p---~~g~----~~is~~~ 906 (2191)
..+..+||+|++++ |+++..+|||||+++++|||+| +++||+ ++ ..+. .+.+..+
T Consensus 421 ~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~s 492 (666)
T 3o8b_A 421 INAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVS 492 (666)
T ss_dssp CCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHH
T ss_pred CcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHH
Confidence 23889999999875 5566679999999999999998 888774 22 1111 3568889
Q ss_pred ccccccccCCCCCCCceEEEEEeChhh
Q 000107 907 YRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 907 y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
|+||+||||| | ..|. |.|+++.+
T Consensus 493 yiQRiGRtGR-g--~~G~-i~lvt~~e 515 (666)
T 3o8b_A 493 RSQRRGRTGR-G--RRGI-YRFVTPGE 515 (666)
T ss_dssp HHHHHTTBCS-S--SCEE-EEESCCCC
T ss_pred HHHHhccCCC-C--CCCE-EEEEecch
Confidence 9999999999 6 6899 88887754
No 56
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=8.5e-28 Score=306.22 Aligned_cols=275 Identities=17% Similarity=0.140 Sum_probs=181.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
+|+++++++|||||||++|++++++.+...+.+++|++||++||.|+++.+. |+.|....|.... ...++..+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-~~~~~~~~ 73 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-ERTGNEIV 73 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEEC----------CCCSE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-cCCCCceE
Confidence 3789999999999999999999998888888999999999999999887664 4566544443221 22234567
Q ss_pred EEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 000107 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHG 699 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 699 (2191)
.++|.+.+. +.++....+.++++|||||+|+++ ......+..++.... ..+
T Consensus 74 ~~~~~~~l~---~~l~~~~~~~~l~~vViDEaH~~~-----~~~~~~~~~l~~~~~---------------------~~~ 124 (431)
T 2v6i_A 74 DFMCHSTFT---MKLLQGVRVPNYNLYIMDEAHFLD-----PASVAARGYIETRVS---------------------MGD 124 (431)
T ss_dssp EEEEHHHHH---HHHHHTCCCCCCSEEEEESTTCCS-----HHHHHHHHHHHHHHH---------------------TTS
T ss_pred EEEchHHHH---HHHhcCccccCCCEEEEeCCccCC-----ccHHHHHHHHHHHhh---------------------CCC
Confidence 788888753 344455678999999999999963 222233333333321 246
Q ss_pred ceEEEEeccCCCHHHHHHHhhccccccccccccceEEEEeccccccchhhHHHHHHHhhccCCCChhHHHHHHHHHHhcC
Q 000107 700 LQIVGMSATMPNVAAVADWLQAALYETNFRPVPLEEYIKVGNAIYSKKMDVVRTILTAANLGGKDPDHIVELCDEVVQEG 779 (2191)
Q Consensus 700 iqII~mSATL~N~~~la~wL~a~l~~~~~RpvpL~e~i~~~~~~~~~~~~~~r~l~~~~~~~~~d~d~l~~Ll~e~~~~g 779 (2191)
+|+|+||||+++. ..-+..... |+.. +. ..... .....+..++ ...+
T Consensus 125 ~~~l~~SAT~~~~--------~~~~~~~~~--~i~~-~~--~~~~~-----------------~~~~~~~~~l---~~~~ 171 (431)
T 2v6i_A 125 AGAIFMTATPPGT--------TEAFPPSNS--PIID-EE--TRIPD-----------------KAWNSGYEWI---TEFD 171 (431)
T ss_dssp CEEEEEESSCTTC--------CCSSCCCSS--CCEE-EE--CCCCS-----------------SCCSSCCHHH---HSCS
T ss_pred CcEEEEeCCCCcc--------hhhhcCCCC--ceee-cc--ccCCH-----------------HHHHHHHHHH---HcCC
Confidence 8999999998741 001111111 1111 10 00000 0011112222 2246
Q ss_pred CcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHH
Q 000107 780 HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEERE 859 (2191)
Q Consensus 780 ~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~ 859 (2191)
+++||||++++.|+.++..|.+. ...|+.+||+ +|+
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------~~~v~~lhg~----~r~ 207 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----------------------------------------GKKVLYLNRK----TFE 207 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEEEESTT----THH
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----------------------------------------CCeEEEeCCc----cHH
Confidence 79999999999999988887542 1238899997 688
Q ss_pred HHHHHhhcCCceEEEecccccccCCCCCceEEeecCC-------------CCCcccCcccccccccccCCCCCCCceEEE
Q 000107 860 VVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR-------------IGRDFIDGTRYRQMAGRAGRTGIDTKGESM 926 (2191)
Q Consensus 860 ~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~-------------~g~~~is~~~y~QmiGRAGR~G~d~~Ge~i 926 (2191)
.+++.|++|.++|||||+++++|||+|...| |+... ....+.+..+|.||+||+||.|. ..|.++
T Consensus 208 ~~~~~f~~g~~~vLVaT~v~e~GiDip~~~V-I~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~~~~~ 285 (431)
T 2v6i_A 208 SEYPKCKSEKWDFVITTDISEMGANFKADRV-IDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE-KLGDIY 285 (431)
T ss_dssp HHTTHHHHSCCSEEEECGGGGTSCCCCCSEE-EECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCCEE
T ss_pred HHHHhhcCCCCeEEEECchHHcCcccCCcEE-EecCccccceecccceeecccccCCHHHHHHhhhccCCCCC-CCCeEE
Confidence 9999999999999999999999999994443 32110 11233588899999999999983 245556
Q ss_pred EEe
Q 000107 927 LIC 929 (2191)
Q Consensus 927 ll~ 929 (2191)
++.
T Consensus 286 ~~~ 288 (431)
T 2v6i_A 286 AYS 288 (431)
T ss_dssp EEC
T ss_pred EEc
Confidence 555
No 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=8.2e-28 Score=315.10 Aligned_cols=345 Identities=17% Similarity=0.153 Sum_probs=233.2
Q ss_pred HHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 518 KKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 518 ~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
+..|+ +||++|..+++. +++|+ |..++||+|||++|.+|++...+ .|+.++||+|+++||.|.++++..++..+
T Consensus 106 R~lG~-rP~~VQ~~~ip~--Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL-~g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 106 RVLDQ-RPFDVQVMGAAA--LHLGN--VAEMKTGEGKTLTCVLPAYLNAL-AGNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp HHHSC-CCCHHHHHHHHH--HHTTE--EEECCTTSCHHHHTHHHHHHHHT-TTSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHcCC-CCCHHHHHHHHh--HhcCC--EEEecCCCccHHHHHHHHHHHHH-hCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 34799 999999999987 88887 99999999999999999976555 47789999999999999999999999999
Q ss_pred CCeEEEEeccCCCC--CCCCCCceEEEchHHH-HHHHHHhh----hcCCCCccceEEEccccccc-ccch----------
Q 000107 598 GRHVRSYYGNQGGG--SLPKDTSVAVCTIEKA-NSLVNRML----EEGRLSEIGIIVIDELHMVA-DQNR---------- 659 (2191)
Q Consensus 598 g~~V~~~~G~~~~~--~l~~~~~IiV~TpEkl-~~Ll~~l~----~~~~L~~l~lVVIDEaH~l~-d~~R---------- 659 (2191)
|++|..++|+.... ....+++|+|+||+++ .++++..+ ....++.+.++||||+|.|. |..|
T Consensus 180 GLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 180 GLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPAD 259 (922)
T ss_dssp TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECC
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCC
Confidence 99999999875421 1112479999999998 66666532 24567889999999999887 5433
Q ss_pred -----hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEE-----------------EEeccCCC-HHHHH
Q 000107 660 -----GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIV-----------------GMSATMPN-VAAVA 716 (2191)
Q Consensus 660 -----G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII-----------------~mSATL~N-~~~la 716 (2191)
...+..++..+. .. .++. -..+..|++ ++|||.+. ...+.
T Consensus 260 ~~~~~y~~i~~iv~~L~---~~-----~dy~---------vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~ 322 (922)
T 1nkt_A 260 GASNWYTEFARLAPLME---KD-----VHYE---------VDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLN 322 (922)
T ss_dssp CCHHHHHHHHHHHHHSC---BT-----TTEE---------EETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHH
T ss_pred cchhHHHHHHHHHHhCc---cc-----ccce---------eccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHH
Confidence 233444444441 00 0000 001456777 78888764 23333
Q ss_pred HHhhcc-ccccc-----------------ccccc-------------ceEEEE----------eccccc----c------
Q 000107 717 DWLQAA-LYETN-----------------FRPVP-------------LEEYIK----------VGNAIY----S------ 745 (2191)
Q Consensus 717 ~wL~a~-l~~~~-----------------~Rpvp-------------L~e~i~----------~~~~~~----~------ 745 (2191)
..|.+. +|..+ .|..+ .++.+. +....| .
T Consensus 323 ~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMT 402 (922)
T 1nkt_A 323 NALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMT 402 (922)
T ss_dssp HHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccc
Confidence 333221 11000 01000 000000 000000 0
Q ss_pred ----chhhHHHHHHHh------hc-----------cCCC---ChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHH
Q 000107 746 ----KKMDVVRTILTA------AN-----------LGGK---DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSK 801 (2191)
Q Consensus 746 ----~~~~~~r~l~~~------~~-----------~~~~---d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~ 801 (2191)
........++.. .. .-.. +...+...+.+....+.++||||+|+..++.++..|.+
T Consensus 403 GTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~ 482 (922)
T 1nkt_A 403 GTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTK 482 (922)
T ss_dssp SCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH
Confidence 000011111100 00 0001 12334455555555678999999999999999888855
Q ss_pred HHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccc
Q 000107 802 FLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAA 881 (2191)
Q Consensus 802 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~ 881 (2191)
. ++ .+..+||++...++.+|.++|+.| .|+|||++++|
T Consensus 483 ~----Gi------------------------------------~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgR 520 (922)
T 1nkt_A 483 R----RI------------------------------------PHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGR 520 (922)
T ss_dssp T----TC------------------------------------CCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCST
T ss_pred C----CC------------------------------------CEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhc
Confidence 2 11 155689999999999999999998 69999999999
Q ss_pred cCCCCCc----------------------------------------------------eEEeecCCCCCcccCcccccc
Q 000107 882 GVNLPAR----------------------------------------------------RVIFRQPRIGRDFIDGTRYRQ 909 (2191)
Q Consensus 882 GVNLPav----------------------------------------------------~VVI~~p~~g~~~is~~~y~Q 909 (2191)
|+||+.. .+||++.++. +...|.|
T Consensus 521 GtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pe----s~riy~q 596 (922)
T 1nkt_A 521 GTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHE----SRRIDNQ 596 (922)
T ss_dssp TCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCS----SHHHHHH
T ss_pred CccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCC----CHHHHHH
Confidence 9999974 5899888776 7888999
Q ss_pred cccccCCCCCCCceEEEEEeChhh
Q 000107 910 MAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 910 miGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
|+||+||.| .+|.++.|++.++
T Consensus 597 r~GRTGRqG--dpG~s~fflSleD 618 (922)
T 1nkt_A 597 LRGRSGRQG--DPGESRFYLSLGD 618 (922)
T ss_dssp HHHTSSGGG--CCEEEEEEEETTS
T ss_pred HhcccccCC--CCeeEEEEechhH
Confidence 999999999 8999999887654
No 58
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.94 E-value=5.9e-27 Score=310.43 Aligned_cols=321 Identities=15% Similarity=0.187 Sum_probs=185.1
Q ss_pred CCCHHHHHhhhhccccc-----CCeEEEEcCCCCchhHHHHHHHHHHHHh--------cCCEEEEEchhHHHHHHHH-HH
Q 000107 524 KLYPWQVECLHVDGVLQ-----RRNLVYCASTSAGKSFVAEILMLRRLIS--------TGKMALLVLPYVSICAEKA-EH 589 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~-----gknlIi~APTGSGKTlvael~iL~~ll~--------~g~kaL~I~P~raLA~q~~-~~ 589 (2191)
.|+|+|.++++. ++. ++++++++|||+|||+++..++.+.+.. .++++|||+|+++|+.|+. +.
T Consensus 178 ~lr~~Q~~ai~~--~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 178 SPRYYQQIAINR--AVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp -CCHHHHHHHHH--HHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CchHHHHHHHHH--HHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 799999999986 543 4779999999999999976554443332 4579999999999999988 55
Q ss_pred HHHHhhccCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHH--hhhcCCCCccceEEEcccccccccchhHHHHHHH
Q 000107 590 LEVLLEPLGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNR--MLEEGRLSEIGIIVIDELHMVADQNRGYLLELLL 667 (2191)
Q Consensus 590 l~~l~~~lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~--l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL 667 (2191)
++. ++..+..+.+. ....+.+|+|+||+++....+. +........+++|||||+|++.... +..+..++
T Consensus 256 ~~~----~~~~~~~~~~~----~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il 326 (590)
T 3h1t_A 256 FTP----FGDARHKIEGG----KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREIL 326 (590)
T ss_dssp CTT----TCSSEEECCC------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHH
T ss_pred HHh----cchhhhhhhcc----CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHH
Confidence 543 34444444332 3445689999999998776531 1233345678999999999987532 23444444
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC--HHHHHHHhhccccccccc-------cccceEE-E
Q 000107 668 TKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN--VAAVADWLQAALYETNFR-------PVPLEEY-I 737 (2191)
Q Consensus 668 ~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N--~~~la~wL~a~l~~~~~R-------pvpL~e~-i 737 (2191)
..+ +..++|+||||..+ ......+++..++..... ..|.... +
T Consensus 327 ~~~---------------------------~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~ 379 (590)
T 3h1t_A 327 EYF---------------------------EPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRV 379 (590)
T ss_dssp HHS---------------------------TTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEE
T ss_pred HhC---------------------------CcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEe
Confidence 443 24689999999653 345666666543321111 0111111 1
Q ss_pred Eecccc--ccchhhHHH---HHHHhhccCCC----------ChhHHHHHHHHHH---hcCCcEEEEeCchhHHHHHHHHH
Q 000107 738 KVGNAI--YSKKMDVVR---TILTAANLGGK----------DPDHIVELCDEVV---QEGHSVLIFCSSRKGCESTARHV 799 (2191)
Q Consensus 738 ~~~~~~--~~~~~~~~r---~l~~~~~~~~~----------d~d~l~~Ll~e~~---~~g~~vLVF~~Sr~~~e~lA~~L 799 (2191)
...... +........ ........... ....+...+.+.+ ..++++||||++++.|+.++..|
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L 459 (590)
T 3h1t_A 380 ISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRAL 459 (590)
T ss_dssp EETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHH
T ss_pred eeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHH
Confidence 110000 000000000 00000000000 1112222232222 23579999999999999999998
Q ss_pred HHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCce---EEEec
Q 000107 800 SKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVR---VLTAT 876 (2191)
Q Consensus 800 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ik---VLVAT 876 (2191)
.+...... ......+..+||.++ ++|+.+++.|++|..+ |||||
T Consensus 460 ~~~~~~~~--------------------------------~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt 506 (590)
T 3h1t_A 460 NNLNSDLS--------------------------------RKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTS 506 (590)
T ss_dssp HHHTHHHH--------------------------------TTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEES
T ss_pred HHhhhhhh--------------------------------ccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEEC
Confidence 76543210 001123778899875 4799999999998766 88999
Q ss_pred ccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCC
Q 000107 877 STLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGI 919 (2191)
Q Consensus 877 stLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~ 919 (2191)
+++++|||+|++.+||.+..+. +...|.||+||+||.+.
T Consensus 507 ~~l~~GiDip~v~~Vi~~~~~~----s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 507 QLLTTGVDAPTCKNVVLARVVN----SMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp STTTTTCCCTTEEEEEEESCCC----CHHHHHHHHTTSCCCBG
T ss_pred ChhhcCccchheeEEEEEecCC----ChHHHHHHHhhhcccCc
Confidence 9999999999999998755544 88899999999999884
No 59
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.92 E-value=7.4e-24 Score=275.06 Aligned_cols=336 Identities=15% Similarity=0.158 Sum_probs=213.6
Q ss_pred CCCCHHHHHhhhhccc----ccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHHHHHHHHHhhc
Q 000107 523 SKLYPWQVECLHVDGV----LQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEKAEHLEVLLEP 596 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~i----l~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~~~~l~~l~~~ 596 (2191)
..|+|+|.+++.. + ..+++.|++.+||+|||+++...+. .+... .+++|||+| .+|+.|+.+++++++.
T Consensus 36 ~~L~~~Q~~~v~~--l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~- 110 (500)
T 1z63_A 36 ANLRPYQIKGFSW--MRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKENELTPSLVICP-LSVLKNWEEELSKFAP- 110 (500)
T ss_dssp SCCCHHHHHHHHH--HHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCT-
T ss_pred ccchHHHHHHHHH--HHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCC-
Confidence 4799999999875 3 3578999999999999999865444 44432 368999999 5788999999988764
Q ss_pred cCCeEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcC
Q 000107 597 LGRHVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGE 676 (2191)
Q Consensus 597 lg~~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~ 676 (2191)
+.++..++|+... ....+.+|+|+|++.+..... .....+++||+||+|.+.+.. ......+..+
T Consensus 111 -~~~v~~~~g~~~~-~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l------ 175 (500)
T 1z63_A 111 -HLRFAVFHEDRSK-IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL------ 175 (500)
T ss_dssp -TSCEEECSSSTTS-CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS------
T ss_pred -CceEEEEecCchh-ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh------
Confidence 4567767666532 223457899999998754332 122357999999999997642 1122222221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC--CHHHHH---HHhhccccc--------------------------
Q 000107 677 GTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP--NVAAVA---DWLQAALYE-------------------------- 725 (2191)
Q Consensus 677 ~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~--N~~~la---~wL~a~l~~-------------------------- 725 (2191)
...+.++||||.. ++.++. .|++...+.
T Consensus 176 ---------------------~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~ 234 (500)
T 1z63_A 176 ---------------------KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKA 234 (500)
T ss_dssp ---------------------CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHH
T ss_pred ---------------------ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHH
Confidence 2357899999953 344433 333221110
Q ss_pred ---------cc-----cccccceE--EEEeccccccchhhHHHH---------------------------HHHhhc---
Q 000107 726 ---------TN-----FRPVPLEE--YIKVGNAIYSKKMDVVRT---------------------------ILTAAN--- 759 (2191)
Q Consensus 726 ---------~~-----~RpvpL~e--~i~~~~~~~~~~~~~~r~---------------------------l~~~~~--- 759 (2191)
.. ....|-.. .+.+... ......... +.....
T Consensus 235 ~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~--~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~ 312 (500)
T 1z63_A 235 IISPFILRRTKYDKAIINDLPDKIETNVYCNLT--PEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPA 312 (500)
T ss_dssp HHTTTEECCCTTCHHHHTTSCSEEEEEEEECCC--HHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTH
T ss_pred HHhhHeeeecccccchhhcCCCCeEEEEEcCCC--HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHH
Confidence 00 00111111 1111100 000000000 000000
Q ss_pred ---------cCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcC
Q 000107 760 ---------LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRC 830 (2191)
Q Consensus 760 ---------~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 830 (2191)
....+...+.+++.+....+.++||||.++..++.++..|....
T Consensus 313 l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~--------------------------- 365 (500)
T 1z63_A 313 LLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL--------------------------- 365 (500)
T ss_dssp HHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH---------------------------
T ss_pred HhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh---------------------------
Confidence 00112234556667767778999999999998887776664421
Q ss_pred CCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcC-Cce-EEEecccccccCCCCCceEEeecCCCCCcccCccccc
Q 000107 831 PAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKG-LVR-VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYR 908 (2191)
Q Consensus 831 ~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G-~ik-VLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~ 908 (2191)
+..+.++||+++..+|..+++.|++| ..+ +|++|.++++|+|+|++.+||.++.+ .++..|.
T Consensus 366 ------------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~----~~~~~~~ 429 (500)
T 1z63_A 366 ------------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRW----WNPAVED 429 (500)
T ss_dssp ------------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCC----SCC---C
T ss_pred ------------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCC----CCcchHH
Confidence 12367799999999999999999998 565 79999999999999999998876554 3888999
Q ss_pred ccccccCCCCCCCceEEEEEeChhhH-HHHHhhhccC
Q 000107 909 QMAGRAGRTGIDTKGESMLICKPEEV-KKIMGLLNES 944 (2191)
Q Consensus 909 QmiGRAGR~G~d~~Ge~ill~~~~e~-~~~~~ll~~~ 944 (2191)
||+||++|.|......+|.++..... +++.+++...
T Consensus 430 Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K 466 (500)
T 1z63_A 430 QATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFK 466 (500)
T ss_dssp HHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTC
T ss_pred HHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHH
Confidence 99999999998777777777765433 2334444433
No 60
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.91 E-value=1.9e-24 Score=254.25 Aligned_cols=179 Identities=16% Similarity=0.245 Sum_probs=153.0
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-------cCCEEEEEchhHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-------TGKMALLVLPYVS 581 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-------~g~kaL~I~P~ra 581 (2191)
|++.+.+.+.+.||.+|+++|.++++. ++.|++++++||||+|||++|.++++..+.. .++++||++|+++
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~ 113 (242)
T 3fe2_A 36 FPANVMDVIARQNFTEPTAIQAQGWPV--ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE 113 (242)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHH--HHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHH
Confidence 789999999999999999999999987 8899999999999999999999999998874 4668999999999
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 582 ICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 582 LA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
|+.|+++.++.++...++++..++|+..... +..+++|+|+||+++..++.+ ....+.++++|||||+|.+.++
T Consensus 114 L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 114 LAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC--GKTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH--TSCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--CCCCcccccEEEEeCHHHHhhh
Confidence 9999999999998888999999988764321 223579999999999888876 4457889999999999999998
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 658 NRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 658 ~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
+++..++.++..+ +++.|+++||||+++ ...+++
T Consensus 192 ~~~~~~~~i~~~~--------------------------~~~~q~~~~SAT~~~~~~~~~~ 226 (242)
T 3fe2_A 192 GFEPQIRKIVDQI--------------------------RPDRQTLMWSATWPKEVRQLAE 226 (242)
T ss_dssp TCHHHHHHHHTTS--------------------------CSSCEEEEEESCCCHHHHHHHH
T ss_pred CcHHHHHHHHHhC--------------------------CccceEEEEEeecCHHHHHHHH
Confidence 8888888776544 356899999999985 444443
No 61
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=256.18 Aligned_cols=182 Identities=18% Similarity=0.202 Sum_probs=154.2
Q ss_pred CCCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh------cCCEEEEEchhH
Q 000107 507 SWLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS------TGKMALLVLPYV 580 (2191)
Q Consensus 507 ~~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~------~g~kaL~I~P~r 580 (2191)
..|++.+.+.+++.||.+|+++|.++++. ++.++|++++||||||||++|.+++++.+.. .+.++||++|++
T Consensus 59 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~ 136 (262)
T 3ly5_A 59 NLVNENTLKAIKEMGFTNMTEIQHKSIRP--LLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTR 136 (262)
T ss_dssp -CCCHHHHHHHHHTTCCBCCHHHHHHHHH--HHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSH
T ss_pred cccCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCH
Confidence 34889999999999999999999999987 8899999999999999999999999998875 577899999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 581 SICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
+||.|+++.+++++...+..+..++|+..... +..+++|+|+||+++..++++. ....+.++++|||||+|++.+
T Consensus 137 ~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~l~~lViDEah~l~~ 215 (262)
T 3ly5_A 137 ELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT-PGFMYKNLQCLVIDEADRILD 215 (262)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC-TTCCCTTCCEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc-CCcccccCCEEEEcChHHHhh
Confidence 99999999999999888999998888764311 2235799999999998887652 224678899999999999999
Q ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 657 ~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
++++..++.++..+ +...|+|+||||+++ +..+++
T Consensus 216 ~~~~~~l~~i~~~~--------------------------~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 216 VGFEEELKQIIKLL--------------------------PTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp TTCHHHHHHHHHHS--------------------------CSSSEEEEECSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHhC--------------------------CCCCeEEEEEecCCHHHHHHHH
Confidence 88888888887665 346799999999985 444443
No 62
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.91 E-value=2.8e-23 Score=287.81 Aligned_cols=348 Identities=15% Similarity=0.170 Sum_probs=212.6
Q ss_pred CCCCHHHHHhhhhccccc--CCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 523 SKLYPWQVECLHVDGVLQ--RRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~--gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.+|+|+|.+++.. ++. +.++|++++||+|||+++..++...+.. ..+++|||+|+ +|+.|+..++.+.+ ++
T Consensus 152 ~~LrpyQ~eav~~--~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l 225 (968)
T 3dmq_A 152 TSLIPHQLNIAHD--VGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF---NL 225 (968)
T ss_dssp SCCCHHHHHHHHH--HHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS---CC
T ss_pred CCCcHHHHHHHHH--HHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh---CC
Confidence 3799999999976 443 5689999999999999997766554433 22489999999 99999998886655 66
Q ss_pred eEEEEeccCC------CCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchh-HHHHHHHHHHHH
Q 000107 600 HVRSYYGNQG------GGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRG-YLLELLLTKLRY 672 (2191)
Q Consensus 600 ~V~~~~G~~~------~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG-~~lE~lL~kLr~ 672 (2191)
.+..+.|... ........+|+|+|++.+..-... .......++++|||||+|.+...... .....++..+..
T Consensus 226 ~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~ 304 (968)
T 3dmq_A 226 RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE 304 (968)
T ss_dssp CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT
T ss_pred CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh
Confidence 7766665541 112234579999999976321100 01112346899999999999764321 112223333321
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC--CHH---HHHHHhhccccccc---------cccc-------
Q 000107 673 AAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP--NVA---AVADWLQAALYETN---------FRPV------- 731 (2191)
Q Consensus 673 ~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~--N~~---~la~wL~a~l~~~~---------~Rpv------- 731 (2191)
...++++||||.- +.. .+..++....|... +.++
T Consensus 305 -------------------------~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l 359 (968)
T 3dmq_A 305 -------------------------HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAML 359 (968)
T ss_dssp -------------------------TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------------cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHH
Confidence 2346999999953 122 23333332221110 0000
Q ss_pred ----c--------ceEEE-----------------------------------------Ee------cc--c-cc---cc
Q 000107 732 ----P--------LEEYI-----------------------------------------KV------GN--A-IY---SK 746 (2191)
Q Consensus 732 ----p--------L~e~i-----------------------------------------~~------~~--~-~~---~~ 746 (2191)
+ +...+ .. +. . .. ..
T Consensus 360 ~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~ 439 (968)
T 3dmq_A 360 LAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLP 439 (968)
T ss_dssp TTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEEC
T ss_pred hccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecC
Confidence 0 00000 00 00 0 00 00
Q ss_pred hhhHHHHHHH---------------------hh----------cc--CCCChhHHHHHHHHHHhcCCcEEEEeCchhHHH
Q 000107 747 KMDVVRTILT---------------------AA----------NL--GGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCE 793 (2191)
Q Consensus 747 ~~~~~r~l~~---------------------~~----------~~--~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e 793 (2191)
.....+.... .. .. .......+..++.. ..+.++||||+++..++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~ 517 (968)
T 3dmq_A 440 LPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATAL 517 (968)
T ss_dssp CCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHH
T ss_pred CCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHH
Confidence 0000000000 00 00 00011223333332 35789999999999988
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCC--ce
Q 000107 794 STARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGL--VR 871 (2191)
Q Consensus 794 ~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~--ik 871 (2191)
.++..|... .+..+..+||+|+..+|..+++.|++|. ++
T Consensus 518 ~l~~~L~~~---------------------------------------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~ 558 (968)
T 3dmq_A 518 QLEQVLRER---------------------------------------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQ 558 (968)
T ss_dssp HHHHHHHTT---------------------------------------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCE
T ss_pred HHHHHHHHH---------------------------------------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCccc
Confidence 887776421 1234889999999999999999999998 99
Q ss_pred EEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh-HHHHHhhhccCCCC
Q 000107 872 VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE-VKKIMGLLNESCPP 947 (2191)
Q Consensus 872 VLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e-~~~~~~ll~~~l~~ 947 (2191)
|||||+++++|+|+|++.+||.+..+. +...|.||+||+||.|......+|.++.... .+.+.+++...+..
T Consensus 559 vLvaT~v~~~GlDl~~~~~VI~~d~p~----~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~ 631 (968)
T 3dmq_A 559 VLLCSEIGSEGRNFQFASHMVMFDLPF----NPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA 631 (968)
T ss_dssp EEECSCCTTCSSCCTTCCEEECSSCCS----SHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred EEEecchhhcCCCcccCcEEEEecCCC----CHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCc
Confidence 999999999999999999999766543 8899999999999999544334444444432 33455555444433
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=243.30 Aligned_cols=172 Identities=22% Similarity=0.235 Sum_probs=143.6
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--------cCCEEEEEchhH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--------TGKMALLVLPYV 580 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--------~g~kaL~I~P~r 580 (2191)
+++.+.+.+.+.||.+|+++|.++++. ++.|+|+++++|||+|||++|.++++..+.. .+.++||++|++
T Consensus 27 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~ 104 (228)
T 3iuy_A 27 QYPDLLKSIIRVGILKPTPIQSQAWPI--ILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTR 104 (228)
T ss_dssp TCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCH
Confidence 678999999999999999999999987 8899999999999999999999999987653 567899999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 581 SICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 581 aLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
+||.|+++++..+. ..++++..++|+..... +..+++|+|+||+++..++.+ ....+.++++|||||+|.+.+
T Consensus 105 ~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~ 181 (228)
T 3iuy_A 105 ELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN--NSVNLRSITYLVIDEADKMLD 181 (228)
T ss_dssp HHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT--TCCCCTTCCEEEECCHHHHHH
T ss_pred HHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcCcccceEEEEECHHHHhc
Confidence 99999999998865 45788888888764322 234579999999999887765 445688999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 657 QNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 657 ~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
.+++..++.++..+ .++.|+++||||+++
T Consensus 182 ~~~~~~~~~i~~~~--------------------------~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 182 MEFEPQIRKILLDV--------------------------RPDRQTVMTSATWPD 210 (228)
T ss_dssp TTCHHHHHHHHHHS--------------------------CSSCEEEEEESCCCH
T ss_pred cchHHHHHHHHHhC--------------------------CcCCeEEEEEeeCCH
Confidence 88888888876554 356899999999985
No 64
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.90 E-value=3.3e-23 Score=251.60 Aligned_cols=180 Identities=15% Similarity=0.124 Sum_probs=144.5
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccC--CeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQR--RNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICA 584 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g--knlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~ 584 (2191)
|++.+.+.+.++||.+|+++|.++|+. ++.+ +|++++||||||||++|.++++..+... +.++||++|+++||.
T Consensus 99 l~~~l~~~l~~~g~~~pt~iQ~~ai~~--il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~ 176 (300)
T 3fmo_B 99 LKPQLLQGVYAMGFNRPSKIQENALPL--MLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 176 (300)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHH
Confidence 789999999999999999999999987 7876 9999999999999999999999987653 448999999999999
Q ss_pred HHHHHHHHHhhcc-CCeEEEEeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc-cchhH
Q 000107 585 EKAEHLEVLLEPL-GRHVRSYYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD-QNRGY 661 (2191)
Q Consensus 585 q~~~~l~~l~~~l-g~~V~~~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d-~~RG~ 661 (2191)
|+++.++.+...+ ++.+...+|+.... ....+.+|+||||+++..++.+. ....+.++++|||||+|.+.+ .+++.
T Consensus 177 Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlDEad~l~~~~~~~~ 255 (300)
T 3fmo_B 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIATQGHQD 255 (300)
T ss_dssp HHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEETTHHHHHHSTTHHH
T ss_pred HHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEeCHHHHhhccCcHH
Confidence 9999999887654 67788777765432 23446799999999988877541 234578999999999999987 45555
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
.+..++..+ +..+|+|+||||+++ +..++.
T Consensus 256 ~~~~i~~~~--------------------------~~~~q~i~~SAT~~~~v~~~a~ 286 (300)
T 3fmo_B 256 QSIRIQRML--------------------------PRNCQMLLFSATFEDSVWKFAQ 286 (300)
T ss_dssp HHHHHHTTS--------------------------CTTCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHhC--------------------------CCCCEEEEEeccCCHHHHHHHH
Confidence 555443222 356899999999985 444443
No 65
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.90 E-value=3.2e-23 Score=243.92 Aligned_cols=188 Identities=20% Similarity=0.243 Sum_probs=150.8
Q ss_pred CCcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHH
Q 000107 508 WLPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICA 584 (2191)
Q Consensus 508 ~Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~ 584 (2191)
.|++.+.+.+.+.||..|+|+|.++++. ++.|++++++||||+|||++|.++++..+.. .+.++||++|+++|+.
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~ 112 (245)
T 3dkp_A 35 KINSRLLQNILDAGFQMPTPIQMQAIPV--MLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELAS 112 (245)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHH
Confidence 3789999999999999999999999987 8999999999999999999999999988864 4668999999999999
Q ss_pred HHHHHHHHHhhccCCeEEEEeccCC-----CCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 585 EKAEHLEVLLEPLGRHVRSYYGNQG-----GGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 585 q~~~~l~~l~~~lg~~V~~~~G~~~-----~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
|+++.+.+++...++++..++|+.. ......+++|+|+||+++..++++......+.++++|||||+|++.++++
T Consensus 113 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~ 192 (245)
T 3dkp_A 113 QIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGK 192 (245)
T ss_dssp HHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC-
T ss_pred HHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccccc
Confidence 9999999998888888887776532 12234568999999999988887633345688999999999999987654
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA 721 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a 721 (2191)
....+.+...++.. ...+.|+++||||+++ ++.+|+..
T Consensus 193 ~~~~~~~~~i~~~~----------------------~~~~~~~~~~SAT~~~--~v~~~~~~ 230 (245)
T 3dkp_A 193 TGFRDQLASIFLAC----------------------TSHKVRRAMFSATFAY--DVEQWCKL 230 (245)
T ss_dssp -CHHHHHHHHHHHC----------------------CCTTCEEEEEESSCCH--HHHHHHHH
T ss_pred ccHHHHHHHHHHhc----------------------CCCCcEEEEEeccCCH--HHHHHHHH
Confidence 44444444444332 1356899999999974 55566554
No 66
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.89 E-value=5.6e-23 Score=234.91 Aligned_cols=173 Identities=23% Similarity=0.265 Sum_probs=146.9
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+|+|.++++. ++.++++++++|||+|||++|.++++..+.. .+.++||++|+++|+.|+
T Consensus 10 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 87 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPIQEESIPI--ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV 87 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHH--HHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHH
Confidence 779999999999999999999999987 8899999999999999999999999987653 356899999999999999
Q ss_pred HHHHHHHhhcc-CCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 587 AEHLEVLLEPL-GRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~l-g~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
++.+..+.... +..+..++|+.... ....+++|+|+||+++..++.+ ....+.++++||+||+|.+.+.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~~~~ 165 (206)
T 1vec_A 88 SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLSQDFVQ 165 (206)
T ss_dssp HHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTSTTTHH
T ss_pred HHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc--CCcCcccCCEEEEEChHHhHhhCcHH
Confidence 99999988776 78888888876421 2345689999999999887765 34467899999999999998877877
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
.++.++..+ +.+.|+|+||||+++
T Consensus 166 ~l~~i~~~~--------------------------~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 166 IMEDIILTL--------------------------PKNRQILLYSATFPL 189 (206)
T ss_dssp HHHHHHHHS--------------------------CTTCEEEEEESCCCH
T ss_pred HHHHHHHhC--------------------------CccceEEEEEeeCCH
Confidence 777776554 246899999999974
No 67
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.89 E-value=7.4e-23 Score=236.81 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=146.4
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+++|.++++. +++++++++++|||+|||++|.+++++.+.. .+.++||++|+++|+.|+
T Consensus 11 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 88 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEIQERIIPG--ALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQI 88 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHH
Confidence 778999999999999999999999987 8899999999999999999999999988664 356899999999999999
Q ss_pred HHHHHHHhhcc----CCeEEEEeccCCC----CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc
Q 000107 587 AEHLEVLLEPL----GRHVRSYYGNQGG----GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN 658 (2191)
Q Consensus 587 ~~~l~~l~~~l----g~~V~~~~G~~~~----~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~ 658 (2191)
++.++++.... ++.+..++|+... ..+..+++|+|+||+++..++++ ....+.++++|||||+|.+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~~ 166 (219)
T 1q0u_A 89 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEADLMLDMG 166 (219)
T ss_dssp HHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSHHHHHHTT
T ss_pred HHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc--CCCCcCcceEEEEcCchHHhhhC
Confidence 99999987765 6788888887532 22345689999999999888765 44567889999999999999887
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 659 RGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 659 RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
++..++.++..+ +...|+++||||+++
T Consensus 167 ~~~~l~~i~~~~--------------------------~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 167 FITDVDQIAARM--------------------------PKDLQMLVFSATIPE 193 (219)
T ss_dssp CHHHHHHHHHTS--------------------------CTTCEEEEEESCCCG
T ss_pred hHHHHHHHHHhC--------------------------CcccEEEEEecCCCH
Confidence 777776665443 346899999999975
No 68
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.89 E-value=1.1e-22 Score=237.52 Aligned_cols=181 Identities=17% Similarity=0.235 Sum_probs=149.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||.+|+++|.++++. ++.|+|+++++|||+|||++|.++++..+.. .+.++||++|+++|+.|+
T Consensus 31 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 108 (230)
T 2oxc_A 31 LSRPVLEGLRAAGFERPSPVQLKAIPL--GRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQI 108 (230)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHH
Confidence 789999999999999999999999987 8899999999999999999999999988754 356999999999999999
Q ss_pred HHHHHHHhhcc-CCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccc-hhH
Q 000107 587 AEHLEVLLEPL-GRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN-RGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~l-g~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~-RG~ 661 (2191)
++.++.+.... ++++..++|+..... ...+.+|+|+||+++..++++ ....+.++++|||||+|.+.+.+ ++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~~~~~ 186 (230)
T 2oxc_A 109 HSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--DYLNPGSIRLFILDEADKLLEEGSFQE 186 (230)
T ss_dssp HHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT--TSSCGGGCCEEEESSHHHHHSTTSSHH
T ss_pred HHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc--CCcccccCCEEEeCCchHhhcCcchHH
Confidence 99999987665 788888888764211 123679999999999888765 34467889999999999998875 777
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA 721 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a 721 (2191)
.++.++..+ +...|+|+||||+++ .+.+++..
T Consensus 187 ~~~~i~~~~--------------------------~~~~~~l~lSAT~~~--~~~~~~~~ 218 (230)
T 2oxc_A 187 QINWIYSSL--------------------------PASKQMLAVSATYPE--FLANALTK 218 (230)
T ss_dssp HHHHHHHHS--------------------------CSSCEEEEEESCCCH--HHHHHHTT
T ss_pred HHHHHHHhC--------------------------CCCCeEEEEEeccCH--HHHHHHHH
Confidence 777666544 246799999999874 45555543
No 69
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.89 E-value=1.9e-22 Score=233.68 Aligned_cols=173 Identities=19% Similarity=0.197 Sum_probs=144.4
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||..|+++|.++++. ++.++++++++|||+|||++|.++++..+.. .+.++||++|+++|+.|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (224)
T 1qde_A 21 LDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 98 (224)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHH--HhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHH
Confidence 779999999999999999999999987 8899999999999999999999999987754 356899999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
++.+..++...++++..++|+..... ...+++|+|+||+++..++.+ ....+.++++||+||+|.+.+.+++..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~~~~~l 176 (224)
T 1qde_A 99 QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSGFKEQI 176 (224)
T ss_dssp HHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred HHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEcChhHHhhhhhHHHH
Confidence 99999988888899988888764321 123489999999998887765 4456788999999999999888777777
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
..++..+ +...|+|+||||+++
T Consensus 177 ~~i~~~~--------------------------~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 177 YQIFTLL--------------------------PPTTQVVLLSATMPN 198 (224)
T ss_dssp HHHHHHS--------------------------CTTCEEEEEESSCCH
T ss_pred HHHHHhC--------------------------CccCeEEEEEeecCH
Confidence 6665543 356899999999985
No 70
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.89 E-value=5.4e-23 Score=243.27 Aligned_cols=182 Identities=17% Similarity=0.209 Sum_probs=148.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-----------CCEEEEEc
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-----------GKMALLVL 577 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-----------g~kaL~I~ 577 (2191)
|++.+.+.+.+.||.+|+++|.++++. ++.++++++++|||+|||++|.++++..+... +.++||++
T Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~ 107 (253)
T 1wrb_A 30 LDPTIRNNILLASYQRPTPIQKNAIPA--ILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILA 107 (253)
T ss_dssp CCCSTTTTTTTTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEE
Confidence 455666777889999999999999987 89999999999999999999999999887642 35899999
Q ss_pred hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccc
Q 000107 578 PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHM 653 (2191)
Q Consensus 578 P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~ 653 (2191)
|+++|+.|+++.++.+....++++..++|+.... .+..+++|+|+||+++..++++ ....+.++++||+||+|+
T Consensus 108 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~ 185 (253)
T 1wrb_A 108 PTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK--NKISLEFCKYIVLDEADR 185 (253)
T ss_dssp SSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT--TSBCCTTCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc--CCCChhhCCEEEEeCHHH
Confidence 9999999999999998888888888888876432 1234679999999999888765 344678899999999999
Q ss_pred ccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH
Q 000107 654 VADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA 716 (2191)
Q Consensus 654 l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la 716 (2191)
+.+.+++..++.++.+++.. ...+.|+++||||+++ ..+++
T Consensus 186 ~~~~~~~~~~~~i~~~~~~~----------------------~~~~~q~l~~SAT~~~~~~~~~ 227 (253)
T 1wrb_A 186 MLDMGFEPQIRKIIEESNMP----------------------SGINRQTLMFSATFPKEIQKLA 227 (253)
T ss_dssp HHHTTCHHHHHHHHHSSCCC----------------------CGGGCEEEEEESSCCHHHHHHH
T ss_pred HHhCchHHHHHHHHhhccCC----------------------CCCCcEEEEEEEeCCHHHHHHH
Confidence 99888888888877643110 1136799999999975 33443
No 71
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=237.63 Aligned_cols=180 Identities=17% Similarity=0.183 Sum_probs=148.6
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh------cCCEEEEEchhHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS------TGKMALLVLPYVSI 582 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~------~g~kaL~I~P~raL 582 (2191)
|++.+.+.+.+.||..|+++|.++++. ++.|+++++++|||+|||++|.++++..+.. .+.++||++|+++|
T Consensus 32 l~~~l~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L 109 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEIQKQTIGL--ALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTREL 109 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHH
Confidence 779999999999999999999999987 8899999999999999999999999988764 46789999999999
Q ss_pred HHHHHHHHHHHhhccCCeEEEEeccCCCCC---CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 583 CAEKAEHLEVLLEPLGRHVRSYYGNQGGGS---LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 583 A~q~~~~l~~l~~~lg~~V~~~~G~~~~~~---l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
+.|+++.++.++...++.+..++|+..... ...+++|+|+||+++..++.+. ....+.++++|||||+|.+.++++
T Consensus 110 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~~~~~~~ 188 (236)
T 2pl3_A 110 AYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILDMGF 188 (236)
T ss_dssp HHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHC-SSCCCTTCCEEEETTHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhc-CCcccccccEEEEeChHHHhcCCc
Confidence 999999999988888889988888764311 1136799999999988777652 234578899999999999998887
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
+..++.++..+ +...|+++||||+++ ..++++
T Consensus 189 ~~~~~~i~~~~--------------------------~~~~~~l~~SAT~~~~~~~~~~ 221 (236)
T 2pl3_A 189 ADTMNAVIENL--------------------------PKKRQTLLFSATQTKSVKDLAR 221 (236)
T ss_dssp HHHHHHHHHTS--------------------------CTTSEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHhC--------------------------CCCCeEEEEEeeCCHHHHHHHH
Confidence 77777665544 346799999999984 444444
No 72
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.89 E-value=1.2e-22 Score=238.22 Aligned_cols=178 Identities=20% Similarity=0.225 Sum_probs=145.3
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--cCCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--TGKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~--~g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||..|+++|.++++. ++.++|+++++|||+|||++|.+++++.+.. .+.++||++|+++|+.|+
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~--i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 114 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIP--CIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQI 114 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHH
Confidence 778999999999999999999999987 8899999999999999999999999987654 456999999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC----CC-CCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS----LP-KDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGY 661 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~----l~-~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~ 661 (2191)
++.++.++...+..+..++|+..... +. ..++|+|+||+++..++++ ....+..+++|||||+|.+.+.+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~~~~~ 192 (237)
T 3bor_A 115 QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--RYLSPKWIKMFVLDEADEMLSRGFKD 192 (237)
T ss_dssp HHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--CCcCcccCcEEEECCchHhhccCcHH
Confidence 99999988878888888888754321 22 2379999999998888765 34467889999999999998877777
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHH
Q 000107 662 LLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVA 716 (2191)
Q Consensus 662 ~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la 716 (2191)
.+..++..+ +...|+|+||||+++ ..++.
T Consensus 193 ~l~~i~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~ 222 (237)
T 3bor_A 193 QIYEIFQKL--------------------------NTSIQVVLLSATMPTDVLEVT 222 (237)
T ss_dssp HHHHHHHHS--------------------------CTTCEEEEECSSCCHHHHHHH
T ss_pred HHHHHHHhC--------------------------CCCCeEEEEEEecCHHHHHHH
Confidence 776666544 356899999999984 33433
No 73
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=240.57 Aligned_cols=180 Identities=21% Similarity=0.278 Sum_probs=150.7
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.++++||..|+++|.++++. ++.|+++++++|||+|||++|.+++++.+... +.++||++|+++|+.|+
T Consensus 50 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~ 127 (249)
T 3ber_A 50 VTDVLCEACDQLGWTKPTKIQIEAIPL--ALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQI 127 (249)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHH
Confidence 778999999999999999999999987 89999999999999999999999999888764 45799999999999999
Q ss_pred HHHHHHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHH
Q 000107 587 AEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYL 662 (2191)
Q Consensus 587 ~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~ 662 (2191)
++.++.+....++++..++|+..... +..+++|+|+||+++..++.+. ....+.++++|||||+|++.+.+++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~l~~~~~lViDEah~l~~~~~~~~ 206 (249)
T 3ber_A 128 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT-KGFNLRALKYLVMDEADRILNMDFETE 206 (249)
T ss_dssp HHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHS-TTCCCTTCCEEEECSHHHHHHTTCHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CCcCccccCEEEEcChhhhhccChHHH
Confidence 99999998888999998888764311 2346799999999998877652 223578899999999999998888877
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 663 LELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 663 lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
++.++..+ +...|+++||||+++ ..++++
T Consensus 207 l~~i~~~~--------------------------~~~~~~l~~SAT~~~~v~~~~~ 236 (249)
T 3ber_A 207 VDKILKVI--------------------------PRDRKTFLFSATMTKKVQKLQR 236 (249)
T ss_dssp HHHHHHSS--------------------------CSSSEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHhC--------------------------CCCCeEEEEeccCCHHHHHHHH
Confidence 77766443 346899999999984 444444
No 74
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.88 E-value=1.6e-22 Score=231.06 Aligned_cols=179 Identities=25% Similarity=0.313 Sum_probs=147.4
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----cCCEEEEEchhHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----TGKMALLVLPYVSIC 583 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-----~g~kaL~I~P~raLA 583 (2191)
|++.+.+.+.+.||..|+|+|.++++. +++++++++++|||+|||++|.++++..+.. .+.++||++|+++|+
T Consensus 8 l~~~l~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~ 85 (207)
T 2gxq_A 8 LKPEILEALHGRGLTTPTPIQAAALPL--ALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELA 85 (207)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH--HcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHH
Confidence 678999999999999999999999987 8999999999999999999999999988753 467899999999999
Q ss_pred HHHHHHHHHHhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 584 AEKAEHLEVLLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 584 ~q~~~~l~~l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
.|+++.+..++.. +++..++|+..... ...+++|+|+||+++..++++ ....+.++++||+||+|.+.+.++
T Consensus 86 ~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~~ 161 (207)
T 2gxq_A 86 LQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--GVLDLSRVEVAVLDEADEMLSMGF 161 (207)
T ss_dssp HHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--TSSCCTTCSEEEEESHHHHHHTTC
T ss_pred HHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--CCcchhhceEEEEEChhHhhccch
Confidence 9999999988654 56777777654311 123579999999999888876 445688999999999999988777
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHHHh
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVADWL 719 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~wL 719 (2191)
+..++.++..+ +...|+|+||||+++ ..++.+++
T Consensus 162 ~~~~~~i~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 162 EEEVEALLSAT--------------------------PPSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp HHHHHHHHHTS--------------------------CTTSEEEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--------------------------CccCeEEEEEEecCHHHHHHHHHH
Confidence 77777665433 346899999999985 45555443
No 75
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.87 E-value=2.5e-21 Score=266.32 Aligned_cols=373 Identities=13% Similarity=0.145 Sum_probs=207.5
Q ss_pred cHHHHHHHHHcC-------CCCCCHHHHHhhhhccccc--------------CCeEEEEcCCCCchhHHHHHHHHHHHHh
Q 000107 510 PSEICSIYKKRG-------ISKLYPWQVECLHVDGVLQ--------------RRNLVYCASTSAGKSFVAEILMLRRLIS 568 (2191)
Q Consensus 510 p~~l~~~l~~~G-------i~~l~p~Q~eal~~~~il~--------------gknlIi~APTGSGKTlvael~iL~~ll~ 568 (2191)
+..+.+.+...- ...|+|+|.+|++. ++. +++.+++++||||||+++ +++++.+..
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~--il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~ 326 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATER--ILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE 326 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHH--HHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHH--HHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh
Confidence 355566665431 23599999999986 443 478999999999999998 666655443
Q ss_pred --cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC----CC-CCCCceEEEchHHHHHHHHHhhhcCCCC
Q 000107 569 --TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG----SL-PKDTSVAVCTIEKANSLVNRMLEEGRLS 641 (2191)
Q Consensus 569 --~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~----~l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~ 641 (2191)
...++|||+|+++|+.|..+.+..+... . ..+..... .+ ..+.+|+|+||+++..++........+.
T Consensus 327 ~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~---~---v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~ 400 (1038)
T 2w00_A 327 LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD---S---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYN 400 (1038)
T ss_dssp CTTCCEEEEEECGGGCCHHHHHHHHTTSTT---C---SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGG
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHHHhccc---c---cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccc
Confidence 2359999999999999999988776432 1 11221110 11 2457999999999988776421112356
Q ss_pred ccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCH------HHH
Q 000107 642 EIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNV------AAV 715 (2191)
Q Consensus 642 ~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~------~~l 715 (2191)
...+||+||+|++.. |..+..++..+ ++.+++|||||+... ...
T Consensus 401 ~~~lvIiDEAHrs~~---~~~~~~I~~~~---------------------------p~a~~lgfTATP~~~~~~~~~~~t 450 (1038)
T 2w00_A 401 QQVVFIFDECHRSQF---GEAQKNLKKKF---------------------------KRYYQFGFTGTPIFPENALGSETT 450 (1038)
T ss_dssp SCEEEEEESCCTTHH---HHHHHHHHHHC---------------------------SSEEEEEEESSCCCSTTCTTSCCH
T ss_pred cccEEEEEccchhcc---hHHHHHHHHhC---------------------------CcccEEEEeCCccccccchhhhHH
Confidence 789999999999652 33333333222 457999999997532 245
Q ss_pred HHHhhcccccccc-------ccccceEEEE-eccccccchh-h-HHHHHHHhhc-cCCCChhHHHHHHHHHHh-------
Q 000107 716 ADWLQAALYETNF-------RPVPLEEYIK-VGNAIYSKKM-D-VVRTILTAAN-LGGKDPDHIVELCDEVVQ------- 777 (2191)
Q Consensus 716 a~wL~a~l~~~~~-------RpvpL~e~i~-~~~~~~~~~~-~-~~r~l~~~~~-~~~~d~d~l~~Ll~e~~~------- 777 (2191)
..++|..++.... --+|+...+. +... +.... . .......... ..-..+..+..++..++.
T Consensus 451 ~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~-~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~ 529 (1038)
T 2w00_A 451 ASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQ-FKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTH 529 (1038)
T ss_dssp HHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGG-GHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccch-hhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhh
Confidence 5566644332111 1123221111 1000 00000 0 0000100000 000122333222222211
Q ss_pred ------cCCcEEEEeCchhHHHHHHHHHHHHHhhc-----c---cc----cCCCCchhhhhHHHHHHhhc---CCCCCCh
Q 000107 778 ------EGHSVLIFCSSRKGCESTARHVSKFLKKF-----S---IN----VHSSDSEFIDITSAIDALRR---CPAGLDP 836 (2191)
Q Consensus 778 ------~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~-----~---~~----~~~~~~~~~~~~~~~~~L~~---~~~gld~ 836 (2191)
.+.++||||+|+..|..++..|.+..... . .. ......+... ....+.. .+.+++.
T Consensus 530 ~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~---~~G~~~~e~~~~~~~~~ 606 (1038)
T 2w00_A 530 RTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQN---AIGEISDETFDTSAMDS 606 (1038)
T ss_dssp CSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC---------CCCCCCCCSCGGGSCH
T ss_pred hhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccc---cccccccccccccccch
Confidence 24689999999999999999998765321 0 00 0000000000 0000000 0000000
Q ss_pred h----hhhhc-----CCcEEEEcC-CCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEe-ecCCCCCcccCcc
Q 000107 837 V----LEETL-----PSGVAYHHA-GLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIF-RQPRIGRDFIDGT 905 (2191)
Q Consensus 837 ~----L~~~l-----~~GVa~hHa-gLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI-~~p~~g~~~is~~ 905 (2191)
. +...+ .+|-.|.+. +-...+|..+.+.|++|.++|||+|+++.+|+|+|.+.+++ +-| ++..
T Consensus 607 ~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tlylDkp------l~~~ 680 (1038)
T 2w00_A 607 SAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLFVDKN------LRYH 680 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEEEESC------CCHH
T ss_pred hHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEEEccC------CCcc
Confidence 0 00000 000000000 00123689999999999999999999999999999997764 322 3667
Q ss_pred cccccccccCCCCCC--CceEEEEEeCh
Q 000107 906 RYRQMAGRAGRTGID--TKGESMLICKP 931 (2191)
Q Consensus 906 ~y~QmiGRAGR~G~d--~~Ge~ill~~~ 931 (2191)
.|+||+||++|.+.+ +.|.++-++..
T Consensus 681 ~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 681 GLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp HHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred ceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 899999999999843 45777776654
No 76
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=5.6e-22 Score=229.35 Aligned_cols=179 Identities=17% Similarity=0.208 Sum_probs=142.8
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEchhHHHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLPYVSICAEK 586 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P~raLA~q~ 586 (2191)
|++.+.+.+.+.||..|+++|.++++. +++++++++++|||+|||++|.++++..+... +.++||++|+++|+.|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 98 (220)
T 1t6n_A 21 LKPELLRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 98 (220)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHH
Confidence 779999999999999999999999987 88999999999999999999999999876542 34899999999999999
Q ss_pred HHHHHHHhhcc-CCeEEEEeccCCCCC----C-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc-ch
Q 000107 587 AEHLEVLLEPL-GRHVRSYYGNQGGGS----L-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-NR 659 (2191)
Q Consensus 587 ~~~l~~l~~~l-g~~V~~~~G~~~~~~----l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-~R 659 (2191)
++.++++.... ++++..++|+..... + ...++|+|+||+++..++++ ....+.++++||+||+|.+.+. ++
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~~~ 176 (220)
T 1t6n_A 99 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQLDM 176 (220)
T ss_dssp HHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHHHSSHHH
T ss_pred HHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh--CCCCcccCCEEEEcCHHHHhcccCc
Confidence 99999887765 788888888754211 1 12469999999999888775 4456889999999999998763 33
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCC-HHHHHH
Q 000107 660 GYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPN-VAAVAD 717 (2191)
Q Consensus 660 G~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N-~~~la~ 717 (2191)
...+..++..+ +.+.|+|+||||+++ ..++.+
T Consensus 177 ~~~~~~i~~~~--------------------------~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 177 RRDVQEIFRMT--------------------------PHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp HHHHHHHHHTS--------------------------CSSSEEEEEESCCCTTTHHHHH
T ss_pred HHHHHHHHHhC--------------------------CCcCeEEEEEeecCHHHHHHHH
Confidence 33333333211 346899999999986 455444
No 77
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.86 E-value=2.8e-20 Score=239.25 Aligned_cols=343 Identities=19% Similarity=0.183 Sum_probs=220.5
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|. ++|+.|.-..-. +.+|+ |.-..||+|||++|.+|++-..+ .|+.+.+|+|+..||.+-++++..++..+|+
T Consensus 72 lg~-r~~dvQligg~~--L~~G~--iaEM~TGEGKTLva~lp~~lnAL-~G~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIA--LHEGK--VAEMKTGEGKTLAATMPIYLNAL-IGKGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSC-CCCHHHHHHHHH--HHTTC--EEECCTTSCHHHHTHHHHHHHHT-TSSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCC-CCcHHHHHHHHH--HhCCC--hhhccCCCCccHHHHHHHHHHHh-cCCceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 576 688999876643 56666 88999999999999999875555 4888999999999999999999999999999
Q ss_pred eEEEEeccC---------------------C------CC------------------CCCC-------CCceEEEchHHH
Q 000107 600 HVRSYYGNQ---------------------G------GG------------------SLPK-------DTSVAVCTIEKA 627 (2191)
Q Consensus 600 ~V~~~~G~~---------------------~------~~------------------~l~~-------~~~IiV~TpEkl 627 (2191)
+|+..+... . .. .... .+||.++|..-+
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~Ef 225 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEF 225 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcch
Confidence 999888720 0 00 0111 279999998775
Q ss_pred -HHHHH-Hhh---hcCCCCccceEEEccccccc-ccchhH-----------HHHHHHHHH-HHhh---------------
Q 000107 628 -NSLVN-RML---EEGRLSEIGIIVIDELHMVA-DQNRGY-----------LLELLLTKL-RYAA--------------- 674 (2191)
Q Consensus 628 -~~Ll~-~l~---~~~~L~~l~lVVIDEaH~l~-d~~RG~-----------~lE~lL~kL-r~~~--------------- 674 (2191)
.+.++ ++. .......+.+.||||+|-|. |..|.+ .+...+..+ +.+.
T Consensus 226 gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~ 305 (822)
T 3jux_A 226 GFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTII 305 (822)
T ss_dssp HHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEE
T ss_pred hhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEE
Confidence 23343 321 12234668999999998653 322211 011111110 0000
Q ss_pred ----------------------------------------cCCCC---CC----CCCCCCCCCCCCCC------------
Q 000107 675 ----------------------------------------GEGTS---DS----SSGENSGTSSGKAD------------ 695 (2191)
Q Consensus 675 ----------------------------------------~~~~~---~s----~~~~~~~~~~~~~~------------ 695 (2191)
.+... .. --++..+.--..++
T Consensus 306 lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaK 385 (822)
T 3jux_A 306 LTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAK 385 (822)
T ss_dssp ECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHH
Confidence 00000 00 00000000000000
Q ss_pred --------------------CCCCceEEEEeccCCC-HHHHHHHhhcccc-ccccccccceEEEEeccccccchhhHHHH
Q 000107 696 --------------------PAHGLQIVGMSATMPN-VAAVADWLQAALY-ETNFRPVPLEEYIKVGNAIYSKKMDVVRT 753 (2191)
Q Consensus 696 --------------------~~~~iqII~mSATL~N-~~~la~wL~a~l~-~~~~RpvpL~e~i~~~~~~~~~~~~~~r~ 753 (2191)
...-.++.|||+|+.. ..++.+..+..++ .+..+|+.-... ...+|.....
T Consensus 386 Egv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~---~d~vy~t~~e---- 458 (822)
T 3jux_A 386 EGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDH---DDLVFRTQKE---- 458 (822)
T ss_dssp HSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCCSSCCCCEEC---CCEEESSHHH----
T ss_pred cCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEECCCCCcceeec---CcEEEecHHH----
Confidence 0011269999999875 4445554443322 233444322211 1112221111
Q ss_pred HHHhhccCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCC
Q 000107 754 ILTAANLGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAG 833 (2191)
Q Consensus 754 l~~~~~~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~g 833 (2191)
+...+...+.+....+.++||||+|+..++.++..|.+. ++
T Consensus 459 ----------K~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~----Gi------------------------- 499 (822)
T 3jux_A 459 ----------KYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKK----GI------------------------- 499 (822)
T ss_dssp ----------HHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTT----TC-------------------------
T ss_pred ----------HHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHC----CC-------------------------
Confidence 123455556555566889999999999999998887531 11
Q ss_pred CChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCC--------CceEEeecCCCCCcccCcc
Q 000107 834 LDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLP--------ARRVIFRQPRIGRDFIDGT 905 (2191)
Q Consensus 834 ld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLP--------av~VVI~~p~~g~~~is~~ 905 (2191)
.+..+||+....+|..+..+++.| .|+|||++++||+||+ +..+||++..+. +..
T Consensus 500 -----------~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pe----s~r 562 (822)
T 3jux_A 500 -----------PHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHE----SRR 562 (822)
T ss_dssp -----------CCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCS----SHH
T ss_pred -----------CEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCC----CHH
Confidence 155689998888888888888887 6999999999999998 566999888776 788
Q ss_pred cccccccccCCCCCCCceEEEEEeChhh
Q 000107 906 RYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 906 ~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
.|.||+||+||.| .+|.++.|++.++
T Consensus 563 ~y~qriGRTGRqG--~~G~a~~fvsleD 588 (822)
T 3jux_A 563 IDNQLRGRAGRQG--DPGESIFFLSLED 588 (822)
T ss_dssp HHHHHHTTSSCSS--CCCEEEEEEETTS
T ss_pred HHHHhhCccccCC--CCeeEEEEechhH
Confidence 8999999999999 8999999987654
No 78
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.6e-20 Score=256.55 Aligned_cols=329 Identities=15% Similarity=0.151 Sum_probs=212.9
Q ss_pred CCCHHHHHhhhhc--ccccCCeEEEEcCCCCchhHHHHHHHHHHHH--hcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 524 KLYPWQVECLHVD--GVLQRRNLVYCASTSAGKSFVAEILMLRRLI--STGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 524 ~l~p~Q~eal~~~--~il~gknlIi~APTGSGKTlvael~iL~~ll--~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
+|+|+|.+++... ....+++.|++.+||.|||+++..++...+. ...+.+|||+| .+|+.|..+++.+++. +.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 7999999999741 1237899999999999999998665544332 24567999999 7888999999988764 46
Q ss_pred eEEEEeccCCCC----------------CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHH
Q 000107 600 HVRSYYGNQGGG----------------SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLL 663 (2191)
Q Consensus 600 ~V~~~~G~~~~~----------------~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~l 663 (2191)
.+..++|..... ......+|+|+|++.+......+. -..+++|||||+|.+.... ..+
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~----~~~w~~vIvDEaH~lkn~~--s~~ 386 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELG----SIKWQFMAVDEAHRLKNAE--SSL 386 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHH----TSEEEEEEETTGGGGCCSS--SHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHh----cCCcceeehhhhhhhcCch--hHH
Confidence 677777754211 123357899999999765433321 2257899999999996532 222
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC--CHHHHH---HHhhccccccc-----------
Q 000107 664 ELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP--NVAAVA---DWLQAALYETN----------- 727 (2191)
Q Consensus 664 E~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~--N~~~la---~wL~a~l~~~~----------- 727 (2191)
...+..+ ...+.++||||.- ++.++. .||....|...
T Consensus 387 ~~~l~~l---------------------------~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~ 439 (800)
T 3mwy_W 387 YESLNSF---------------------------KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEE 439 (800)
T ss_dssp HHHHTTS---------------------------EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTH
T ss_pred HHHHHHh---------------------------hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchh
Confidence 2222211 2346799999952 344443 34432211100
Q ss_pred -----------ccc-------------ccce--EEEEecccc-----ccc-------------------hhhHHHHHHHh
Q 000107 728 -----------FRP-------------VPLE--EYIKVGNAI-----YSK-------------------KMDVVRTILTA 757 (2191)
Q Consensus 728 -----------~Rp-------------vpL~--e~i~~~~~~-----~~~-------------------~~~~~r~l~~~ 757 (2191)
.+| .|-. ..+.+.... |.. ....+..+.+.
T Consensus 440 ~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~ 519 (800)
T 3mwy_W 440 QEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKA 519 (800)
T ss_dssp HHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHH
Confidence 000 1111 111111000 000 00000000000
Q ss_pred ---hc----------------------------cCCCChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhc
Q 000107 758 ---AN----------------------------LGGKDPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKF 806 (2191)
Q Consensus 758 ---~~----------------------------~~~~d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~ 806 (2191)
.. ....+...+..++......++++||||..+..+..+...|...
T Consensus 520 ~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~---- 595 (800)
T 3mwy_W 520 SNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK---- 595 (800)
T ss_dssp HHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH----
T ss_pred hcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC----
Confidence 00 0011223455666666667899999999998877766666431
Q ss_pred ccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHHHHHHHhhcCCc---eEEEecccccccC
Q 000107 807 SINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLV---RVLTATSTLAAGV 883 (2191)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~~Ve~~Fr~G~i---kVLVATstLa~GV 883 (2191)
+..+..+||+++..+|..+++.|+++.. .+|++|.+++.||
T Consensus 596 ------------------------------------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~Gl 639 (800)
T 3mwy_W 596 ------------------------------------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGI 639 (800)
T ss_dssp ------------------------------------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTC
T ss_pred ------------------------------------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCC
Confidence 1237789999999999999999998654 5999999999999
Q ss_pred CCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 884 NLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 884 NLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
|||++.+||.++.. .++..+.|++||++|.|......+|.++...
T Consensus 640 NL~~a~~VI~~D~~----wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 640 NLMTADTVVIFDSD----WNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp CCTTCCEEEESSCC----SCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CccccceEEEecCC----CChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 99999988876554 3888999999999999988888888887764
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=3e-19 Score=238.34 Aligned_cols=329 Identities=12% Similarity=0.131 Sum_probs=206.1
Q ss_pred CCCCHHHHHhhhhccc---------ccCCeEEEEcCCCCchhHHHHHHHHHHHHhc------CCEEEEEchhHHHHHHHH
Q 000107 523 SKLYPWQVECLHVDGV---------LQRRNLVYCASTSAGKSFVAEILMLRRLIST------GKMALLVLPYVSICAEKA 587 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~i---------l~gknlIi~APTGSGKTlvael~iL~~ll~~------g~kaL~I~P~raLA~q~~ 587 (2191)
..|+|+|.+++.. + ..+.+.|++.+||.|||+++...+...+... .+++|||+|. +|+.|..
T Consensus 54 ~~LrpyQ~~gv~~--l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 54 KVLRPHQREGVKF--LWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp TTCCHHHHHHHHH--HHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHH
T ss_pred hcccHHHHHHHHH--HHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHH
Confidence 3799999999975 3 3467899999999999999876665544321 2468999997 8889999
Q ss_pred HHHHHHhhccCCeEEEEeccCCC------------CCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 588 EHLEVLLEPLGRHVRSYYGNQGG------------GSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 588 ~~l~~l~~~lg~~V~~~~G~~~~------------~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
+++.+++.. .+.+..++|+... .......+|+|+|++.+.... ....-..+++||+||+|.+.
T Consensus 131 ~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~----~~l~~~~~~~vI~DEaH~ik 205 (644)
T 1z3i_X 131 NEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA----EVLHKGKVGLVICDEGHRLK 205 (644)
T ss_dssp HHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT----TTTTTSCCCEEEETTGGGCC
T ss_pred HHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH----HHhhcCCccEEEEECceecC
Confidence 999888754 4555555554311 001224789999999865332 22223467999999999997
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCC-C-HH---HHHHHhhccccc-----
Q 000107 656 DQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMP-N-VA---AVADWLQAALYE----- 725 (2191)
Q Consensus 656 d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~-N-~~---~la~wL~a~l~~----- 725 (2191)
+.. ......+..+ ...+.++||||.- | +. .+.+|++..++.
T Consensus 206 n~~--~~~~~al~~l---------------------------~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F 256 (644)
T 1z3i_X 206 NSD--NQTYLALNSM---------------------------NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEF 256 (644)
T ss_dssp TTC--HHHHHHHHHH---------------------------CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHH
T ss_pred Chh--hHHHHHHHhc---------------------------ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHH
Confidence 542 2222333333 1236899999942 2 22 222333211100
Q ss_pred -----------------------------------------------cccccccceEEEEeccc-----cccc-------
Q 000107 726 -----------------------------------------------TNFRPVPLEEYIKVGNA-----IYSK------- 746 (2191)
Q Consensus 726 -----------------------------------------------~~~RpvpL~e~i~~~~~-----~~~~------- 746 (2191)
...-|...+..+.+... .|..
T Consensus 257 ~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~ 336 (644)
T 1z3i_X 257 KKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKP 336 (644)
T ss_dssp HHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCG
T ss_pred HHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 00111111111111110 0000
Q ss_pred ------------hhhHHHHHHHhhc-------------cC---------------------CCChhHHHHHHHHHH-hcC
Q 000107 747 ------------KMDVVRTILTAAN-------------LG---------------------GKDPDHIVELCDEVV-QEG 779 (2191)
Q Consensus 747 ------------~~~~~r~l~~~~~-------------~~---------------------~~d~d~l~~Ll~e~~-~~g 779 (2191)
....+..+.+... .. ..+...+..++.... ..+
T Consensus 337 ~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~ 416 (644)
T 1z3i_X 337 VESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTS 416 (644)
T ss_dssp GGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCC
Confidence 0000000000000 00 000112233333332 247
Q ss_pred CcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHH
Q 000107 780 HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEERE 859 (2191)
Q Consensus 780 ~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~ 859 (2191)
.++||||..+..++.++..|... +..+..+||+++..+|.
T Consensus 417 ~k~lIFs~~~~~~~~l~~~l~~~----------------------------------------g~~~~~l~G~~~~~~R~ 456 (644)
T 1z3i_X 417 DKVVLVSNYTQTLDLFEKLCRNR----------------------------------------RYLYVRLDGTMSIKKRA 456 (644)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH----------------------------------------TCCEEEECSSCCHHHHH
T ss_pred CEEEEEEccHHHHHHHHHHHHHC----------------------------------------CCCEEEEeCCCCHHHHH
Confidence 89999999999877766655321 12377899999999999
Q ss_pred HHHHHhhcCCc---eEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 860 VVETCYRKGLV---RVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 860 ~Ve~~Fr~G~i---kVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
.+++.|++|.. .+|++|.+++.|+|++++.+||.++.+ .++..|.|++||++|.|......+|.++...
T Consensus 457 ~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~----wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 457 KIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPD----WNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp HHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCC----SSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred HHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCC----CCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999865 489999999999999999999876654 3889999999999999987777788777654
No 80
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.80 E-value=2e-18 Score=230.40 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE
Q 000107 768 IVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA 847 (2191)
Q Consensus 768 l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa 847 (2191)
+...+......+.++||||+|++.++.++..|.+. +..+.
T Consensus 428 Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~----------------------------------------gi~~~ 467 (664)
T 1c4o_A 428 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH----------------------------------------GIRAR 467 (664)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEE
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------------CCCce
Confidence 34445555567889999999999999998887542 11378
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC--CCCcccCcccccccccccCCCCCCCceEE
Q 000107 848 YHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR--IGRDFIDGTRYRQMAGRAGRTGIDTKGES 925 (2191)
Q Consensus 848 ~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~--~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ 925 (2191)
++||+|++.+|..+++.|+.|.++|||||+++++|+|+|++++||++.. .| -+.+..+|+||+|||||.+ .|.|
T Consensus 468 ~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G-~p~s~~~~iQr~GRagR~~---~G~~ 543 (664)
T 1c4o_A 468 YLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEG-FLRSERSLIQTIGRAARNA---RGEV 543 (664)
T ss_dssp EECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCS-GGGSHHHHHHHHGGGTTST---TCEE
T ss_pred eecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccC-CCCCHHHHHHHHCccCcCC---CCEE
Confidence 8999999999999999999999999999999999999999998887653 11 1337789999999999997 8999
Q ss_pred EEEeChhh
Q 000107 926 MLICKPEE 933 (2191)
Q Consensus 926 ill~~~~e 933 (2191)
++++++.+
T Consensus 544 i~~~~~~~ 551 (664)
T 1c4o_A 544 WLYADRVS 551 (664)
T ss_dssp EEECSSCC
T ss_pred EEEEcCCC
Confidence 99998754
No 81
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.78 E-value=9.4e-18 Score=219.37 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=109.5
Q ss_pred cCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 520 RGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.|+ +||++|..+++. +++|+ |..+.||+|||++|.+|++...+ .|..++|++||+.||.|.++++..++..+|+
T Consensus 76 lG~-~Pt~VQ~~~ip~--LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-~G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAV--LHEGK--IAEMKTGEGKTLVATLAVALNAL-TGKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHH--HHTTS--EEECCSTHHHHHHHHHHHHHHHT-TCSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhccc--ccCCc--eeeccCCCchHHHHHHHHHHHHH-hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 799 999999999987 88888 99999999999999999975554 4778999999999999999999999999999
Q ss_pred eEEEEeccCCCC--CCCCCCceEEEchHHH-HHHHHHhh----hcCCCC---ccceEEEccccccc
Q 000107 600 HVRSYYGNQGGG--SLPKDTSVAVCTIEKA-NSLVNRML----EEGRLS---EIGIIVIDELHMVA 655 (2191)
Q Consensus 600 ~V~~~~G~~~~~--~l~~~~~IiV~TpEkl-~~Ll~~l~----~~~~L~---~l~lVVIDEaH~l~ 655 (2191)
+|..++|+.... ....+++|+|+||+.+ .++++..+ ....++ .+.++||||+|.+.
T Consensus 150 sv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 150 SVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred eEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999999876421 1112579999999998 67776532 123567 89999999999876
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.75 E-value=7.4e-17 Score=215.24 Aligned_cols=122 Identities=19% Similarity=0.250 Sum_probs=100.9
Q ss_pred HHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEE
Q 000107 768 IVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVA 847 (2191)
Q Consensus 768 l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa 847 (2191)
+...+......+.++||||+|++.|+.++..|.+. +..+.
T Consensus 434 Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~----------------------------------------gi~~~ 473 (661)
T 2d7d_A 434 LIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEI----------------------------------------GIKVN 473 (661)
T ss_dssp HHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEE
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc----------------------------------------CCCeE
Confidence 33445555556789999999999999998887542 11278
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCC--CCCcccCcccccccccccCCCCCCCceEE
Q 000107 848 YHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPR--IGRDFIDGTRYRQMAGRAGRTGIDTKGES 925 (2191)
Q Consensus 848 ~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~--~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ 925 (2191)
++||++++.+|..+++.|+.|.++|||||+++++|+|+|++++||.+.. .| -+.+..+|+||+|||||.+ .|.|
T Consensus 474 ~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G-~p~s~~~~iQr~GRagR~~---~G~~ 549 (661)
T 2d7d_A 474 YLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEG-FLRSERSLIQTIGRAARNA---EGRV 549 (661)
T ss_dssp EECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCT-TTTSHHHHHHHHHTTTTST---TCEE
T ss_pred EEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCccccc-CCCCHHHHHHHhCcccCCC---CCEE
Confidence 8999999999999999999999999999999999999999998887653 11 1237789999999999985 8999
Q ss_pred EEEeChhh
Q 000107 926 MLICKPEE 933 (2191)
Q Consensus 926 ill~~~~e 933 (2191)
++++++.+
T Consensus 550 i~~~~~~~ 557 (661)
T 2d7d_A 550 IMYADKIT 557 (661)
T ss_dssp EEECSSCC
T ss_pred EEEEeCCC
Confidence 99998754
No 83
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=191.62 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=123.7
Q ss_pred HHcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCC----EEEEEchhHHHHHHHHHHHHHH
Q 000107 518 KKRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGK----MALLVLPYVSICAEKAEHLEVL 593 (2191)
Q Consensus 518 ~~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~----kaL~I~P~raLA~q~~~~l~~l 593 (2191)
...+...++++|.++++. +..|++++++||||||||+++.++++......+. +++++.|+++++.|+++.+...
T Consensus 55 ~~~~~~p~~~~q~~~i~~--i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 55 QERELLPVKKFESEILEA--ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp HHHHTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHhcCChHHHHHHHHHH--HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHH
Confidence 333444679999999987 8999999999999999999999999887766544 8999999999999999888765
Q ss_pred hh-ccCCeEEEEeccCCCCCC-CCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHH
Q 000107 594 LE-PLGRHVRSYYGNQGGGSL-PKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLR 671 (2191)
Q Consensus 594 ~~-~lg~~V~~~~G~~~~~~l-~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr 671 (2191)
+. .++..++.-. ...... ..+++|+||||+++..++.. .++++++|||||+|.+ +...+..+..++
T Consensus 133 ~~~~~~~~~g~~~--~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~-----~~~~~~~~~~l~ 200 (235)
T 3llm_A 133 RGEEPGKSCGYSV--RFESILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHER-----DINTDFLLVVLR 200 (235)
T ss_dssp TTCCTTSSEEEEE--TTEEECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSC-----CHHHHHHHHHHH
T ss_pred hccccCceEEEee--chhhccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccC-----CcchHHHHHHHH
Confidence 44 3444444221 111112 25688999999998887754 4889999999999984 233333333333
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhc
Q 000107 672 YAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQA 721 (2191)
Q Consensus 672 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a 721 (2191)
.+... .++.|+|+||||+++.. +++|++.
T Consensus 201 ~i~~~--------------------~~~~~~il~SAT~~~~~-~~~~~~~ 229 (235)
T 3llm_A 201 DVVQA--------------------YPEVRIVLMSATIDTSM-FCEYFFN 229 (235)
T ss_dssp HHHHH--------------------CTTSEEEEEECSSCCHH-HHHHTTS
T ss_pred HHHhh--------------------CCCCeEEEEecCCCHHH-HHHHcCC
Confidence 33211 24689999999998644 8888864
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=189.12 Aligned_cols=136 Identities=19% Similarity=0.271 Sum_probs=99.6
Q ss_pred HcCCCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----cCCEEEEEchhHHHHHH-HHHHHHH
Q 000107 519 KRGISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----TGKMALLVLPYVSICAE-KAEHLEV 592 (2191)
Q Consensus 519 ~~Gi~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-----~g~kaL~I~P~raLA~q-~~~~l~~ 592 (2191)
..+...|+++|.++++. ++.++++++.+|||+|||+++.++++..+.. .+.++||++|+++|+.| ..+.+..
T Consensus 28 ~~~~~~l~~~Q~~~i~~--~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQP--ALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CSCCCCCCHHHHHHHHH--HHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred ccCCCCchHHHHHHHHH--HhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 34556899999999986 8889999999999999999999998876654 26789999999999999 6666776
Q ss_pred HhhccCCeEEEEeccCCCCC----CCCCCceEEEchHHHHHHHHHhhh----cCCCCccceEEEccccccccc
Q 000107 593 LLEPLGRHVRSYYGNQGGGS----LPKDTSVAVCTIEKANSLVNRMLE----EGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 593 l~~~lg~~V~~~~G~~~~~~----l~~~~~IiV~TpEkl~~Ll~~l~~----~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
+... ++++..++|+..... ...+.+|+|+||+++..++.+... ...+.++++|||||+|++.+.
T Consensus 106 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 106 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp HHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred Hhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 6543 778888877654321 112478999999998877764221 145788999999999999764
No 85
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.69 E-value=1.8e-16 Score=175.53 Aligned_cols=128 Identities=23% Similarity=0.354 Sum_probs=103.4
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+++..|+.++..|... ..++..+||+|++.+
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~~~~~~~~~~ 68 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----------------------------------------KFTVSAIYSDLPQQE 68 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----------------------------------------TCCEEEECTTSCHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----------------------------------------CCCEEEEECCCCHHH
Confidence 4579999999999999988877541 234889999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH-
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK- 936 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~- 936 (2191)
|..+++.|++|.++|||||+++++|+|+|++.+||+++.+. +..+|.||+|||||.| ..|.|++++.+.+...
T Consensus 69 r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~----~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~~ 142 (165)
T 1fuk_A 69 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA----NKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAM 142 (165)
T ss_dssp HHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCS----SGGGGGGSSCSCC-------CEEEEEEETTTHHHH
T ss_pred HHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCC----CHHHHHHHhcccccCC--CCceEEEEEcchHHHHH
Confidence 99999999999999999999999999999999999877654 8899999999999999 7899999998876544
Q ss_pred --HHhhhccCCCCcccc
Q 000107 937 --IMGLLNESCPPLHSC 951 (2191)
Q Consensus 937 --~~~ll~~~l~~l~S~ 951 (2191)
+.+++...++++.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 143 RELEKFYSTQIEELPSD 159 (165)
T ss_dssp HHHHHHSSCCCEECCSC
T ss_pred HHHHHHHccCccccCcc
Confidence 445566555555443
No 86
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.68 E-value=1.8e-16 Score=182.90 Aligned_cols=115 Identities=26% Similarity=0.449 Sum_probs=100.6
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+++..++.++..|... +..+.++||+|++.+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~lhg~~~~~~ 69 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL----------------------------------------GHPAQALHGDLSQGE 69 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH----------------------------------------TCCEEEECSSSCHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----------------------------------------CCCEEEEECCCCHHH
Confidence 4689999999999999988877542 234889999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
|..+++.|++|.++|||||+++++|+|+|++++||+++.+. +...|.||+|||||.| ..|.|++++++.+...+
T Consensus 70 r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~----~~~~~~qr~GR~gR~g--~~g~~~~l~~~~~~~~~ 143 (212)
T 3eaq_A 70 RERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPD----RAEAYQHRSGRTGRAG--RGGRVVLLYGPRERRDV 143 (212)
T ss_dssp HHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCS----SHHHHHHHHTTBCCCC----BEEEEEECGGGHHHH
T ss_pred HHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCc----CHHHHHHHhcccCCCC--CCCeEEEEEchhHHHHH
Confidence 99999999999999999999999999999999999987765 8899999999999999 68999999998775444
Q ss_pred H
Q 000107 938 M 938 (2191)
Q Consensus 938 ~ 938 (2191)
.
T Consensus 144 ~ 144 (212)
T 3eaq_A 144 E 144 (212)
T ss_dssp H
T ss_pred H
Confidence 3
No 87
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.67 E-value=3.2e-16 Score=173.16 Aligned_cols=116 Identities=22% Similarity=0.369 Sum_probs=101.8
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+++..|+.++..|... +..+..+||+|++.+
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~~hg~~~~~~ 73 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL----------------------------------------GYPCDKIHGGMIQED 73 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEEEECTTSCHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----------------------------------------CCcEEEEeCCCCHHH
Confidence 4579999999999999988877541 234889999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
|..+++.|++|.++|||||+++++|+|+|++++||+++.+. +..+|.||+||+||.| ..|.|++++.+.+...+
T Consensus 74 r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~----~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~ 147 (163)
T 2hjv_A 74 RFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPL----EKESYVHRTGRTGRAG--NKGKAISFVTAFEKRFL 147 (163)
T ss_dssp HHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCS----SHHHHHHHTTTSSCTT--CCEEEEEEECGGGHHHH
T ss_pred HHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCC----CHHHHHHhccccCcCC--CCceEEEEecHHHHHHH
Confidence 99999999999999999999999999999999999876654 8899999999999999 68999999998776554
Q ss_pred Hh
Q 000107 938 MG 939 (2191)
Q Consensus 938 ~~ 939 (2191)
.+
T Consensus 148 ~~ 149 (163)
T 2hjv_A 148 AD 149 (163)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 88
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=177.88 Aligned_cols=120 Identities=23% Similarity=0.340 Sum_probs=98.0
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+++..|+.++..|... +.++.++||+|++.+
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~~~g~~~~~~ 72 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----------------------------------------GHQVSLLSGELTVEQ 72 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----------------------------------------TCCEEEECSSCCHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----------------------------------------CCcEEEEeCCCCHHH
Confidence 3579999999999999888777431 234899999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCC--CCcccCcccccccccccCCCCCCCceEEEEEeChhhHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRI--GRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVK 935 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~--g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~ 935 (2191)
|..+++.|++|.++|||||+++++|+|+|++++||+++.+ .....+..+|.||+|||||.| ..|.|++++.+.+..
T Consensus 73 R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 73 RASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFG--KKGLAFNMIEVDELP 150 (175)
T ss_dssp HHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC------CCEEEEEEECGGGHH
T ss_pred HHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCC--CCceEEEEEccchHH
Confidence 9999999999999999999999999999999999987654 122258889999999999998 789999999987755
Q ss_pred HHHh
Q 000107 936 KIMG 939 (2191)
Q Consensus 936 ~~~~ 939 (2191)
.+.+
T Consensus 151 ~~~~ 154 (175)
T 2rb4_A 151 SLMK 154 (175)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.66 E-value=2.4e-16 Score=189.60 Aligned_cols=151 Identities=17% Similarity=0.239 Sum_probs=115.9
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS 603 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~ 603 (2191)
+|+++|.++++. ++.+++.++++|||+|||+++.+++...+...++++||++|+++|+.|+.+++.+++...+..+..
T Consensus 113 ~l~~~Q~~ai~~--~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFE--GLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHH--HHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHH--HHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 799999999986 777788899999999999999888777666555699999999999999999999886655567777
Q ss_pred EeccCCCC-CCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCC
Q 000107 604 YYGNQGGG-SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSS 682 (2191)
Q Consensus 604 ~~G~~~~~-~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~ 682 (2191)
++|+.... ......+|+|+||+.+. +. ....+.++++|||||+|.+.+ ..++.++.++
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~---~~--~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~------------ 249 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVV---KQ--PKEWFSQFGMMMNDECHLATG----KSISSIISGL------------ 249 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHT---TS--CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTC------------
T ss_pred EeCCCcchhhhccCCcEEEEchHHHH---hh--HHHHHhhCCEEEEECCccCCc----ccHHHHHHHh------------
Confidence 77765332 12256799999998742 22 223577899999999999863 2344333322
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeccCCC
Q 000107 683 SGENSGTSSGKADPAHGLQIVGMSATMPN 711 (2191)
Q Consensus 683 ~~~~~~~~~~~~~~~~~iqII~mSATL~N 711 (2191)
....++++||||++|
T Consensus 250 --------------~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 250 --------------NNCMFKFGLSGSLRD 264 (282)
T ss_dssp --------------TTCCEEEEECSSCCT
T ss_pred --------------hcCCeEEEEeCCCCC
Confidence 235799999999876
No 90
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.64 E-value=4e-16 Score=174.07 Aligned_cols=110 Identities=26% Similarity=0.338 Sum_probs=98.3
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+++..|+.++..|... +.++..+||+|++.+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~~hg~~~~~~ 69 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----------------------------------------NFPAIAIHRGMPQEE 69 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----------------------------------------TCCEEEECTTSCHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----------------------------------------CCCEEEEECCCCHHH
Confidence 4579999999999999988887541 234889999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhh
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEE 933 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e 933 (2191)
|..+++.|++|.++|||||+++++|+|+|++++||+++.+. +...|.||+|||||.| ..|.+++++.+.+
T Consensus 70 r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~----~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 70 RLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE----DSDTYLHRVARAGRFG--TKGLAITFVSDEN 139 (172)
T ss_dssp HHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCS----SHHHHHHHHHHHTGGG--CCCEEEEEECSHH
T ss_pred HHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCC----CHHHHHHHhcccccCC--CCcEEEEEEcChh
Confidence 99999999999999999999999999999999999877654 8899999999999999 6899999998753
No 91
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.63 E-value=5.9e-16 Score=174.78 Aligned_cols=120 Identities=23% Similarity=0.345 Sum_probs=89.1
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.+.++||||+++..|+.++..|... +..+..+||+|++.+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----------------------------------------g~~~~~lhg~~~~~~ 84 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----------------------------------------GYACTSIHGDRSQRD 84 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----------------------------------------TCCEEEEC-------
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----------------------------------------CCceEEEeCCCCHHH
Confidence 4679999999999999988877431 234899999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhH---
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEV--- 934 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~--- 934 (2191)
|..+++.|++|.++|||||+++++|+|+|++.+||+++.+. +..+|.||+|||||.| ..|.|++++++.+.
T Consensus 85 r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~----s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~ 158 (185)
T 2jgn_A 85 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPS----DIEEYVHRIGRTGRVG--NLGLATSFFNERNINIT 158 (185)
T ss_dssp -CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCS----SHHHHHHHHTTBCCTT--SCEEEEEEECGGGGGGH
T ss_pred HHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCC----CHHHHHHHccccCCCC--CCcEEEEEEchhhHHHH
Confidence 99999999999999999999999999999999999877654 8899999999999999 68999999998664
Q ss_pred HHHHhhhcc
Q 000107 935 KKIMGLLNE 943 (2191)
Q Consensus 935 ~~~~~ll~~ 943 (2191)
+.+.+++..
T Consensus 159 ~~l~~~l~~ 167 (185)
T 2jgn_A 159 KDLLDLLVE 167 (185)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 344445543
No 92
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.63 E-value=7.1e-16 Score=186.62 Aligned_cols=114 Identities=26% Similarity=0.464 Sum_probs=96.7
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||++++.++.++..|.. ..+.+..+||+|++.+
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~----------------------------------------~g~~~~~lhg~l~~~~ 66 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLR----------------------------------------LGHPAQALHGDMSQGE 66 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHT----------------------------------------TTCCEEEECSCCCTHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHh----------------------------------------CCCCEEEEeCCCCHHH
Confidence 368999999999999988877643 1234899999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKKI 937 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~~ 937 (2191)
|..+++.|++|.++|||||+++++|||+|++++||+++.+. +...|.||+|||||.| ..|.|++|+++.+...+
T Consensus 67 r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~----s~~~y~Qr~GRagR~g--~~G~~i~l~~~~e~~~~ 140 (300)
T 3i32_A 67 RERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPD----RAEAYQHRSGRTGRAG--RGGRVVLLYGPRERRDV 140 (300)
T ss_dssp HHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCS----STTHHHHHHTCCC-------CEEEEEECSSTHHHH
T ss_pred HHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCC----CHHHHHHHccCcCcCC--CCceEEEEeChHHHHHH
Confidence 99999999999999999999999999999999999987765 8889999999999999 67999999998765443
No 93
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=173.32 Aligned_cols=109 Identities=22% Similarity=0.299 Sum_probs=94.7
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.+.++||||+++..++.++..|... ...+..+||+|++.+
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------------g~~~~~lhg~~~~~~ 92 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLK----------------------------------------GVEAVAIHGGKDQEE 92 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHH----------------------------------------TCCEEEECTTSCHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----------------------------------------CCcEEEEeCCCCHHH
Confidence 4578999999999999988887542 123888999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChh
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPE 932 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~ 932 (2191)
|..+++.|++|.++|||||+++++|+|+|++++||+++.+. +..+|.||+||+||.| ..|.|++|+++.
T Consensus 93 R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~----~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 93 RTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPE----EIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp HHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCS----SHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred HHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCC----CHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 99999999999999999999999999999999999877654 8899999999999999 689999999864
No 94
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.59 E-value=4.4e-15 Score=194.30 Aligned_cols=128 Identities=22% Similarity=0.210 Sum_probs=87.4
Q ss_pred cCCCCCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhcc
Q 000107 520 RGISKLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPL 597 (2191)
Q Consensus 520 ~Gi~~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~l 597 (2191)
.|| +++|+|.+++.. ..+..++++++.||||+|||++|+++++. .+++++|++||++|+.|+.+++.. +
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~----~~~~~~~~~~t~~l~~q~~~~~~~----l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ----LKKKVLIFTRTHSQLDSIYKNAKL----L 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH----HTCEEEEEESCHHHHHHHHHHHGG----G
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh----CCCcEEEEcCCHHHHHHHHHHHHh----c
Confidence 467 899999998653 23567899999999999999999999875 378999999999999999987765 3
Q ss_pred CCeEEEEeccCC---------------------------------------------------CCCCCCCCceEEEchHH
Q 000107 598 GRHVRSYYGNQG---------------------------------------------------GGSLPKDTSVAVCTIEK 626 (2191)
Q Consensus 598 g~~V~~~~G~~~---------------------------------------------------~~~l~~~~~IiV~TpEk 626 (2191)
++++..+.|... ........+|+|||+..
T Consensus 75 ~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~ 154 (540)
T 2vl7_A 75 GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPY 154 (540)
T ss_dssp TCCEEEC---------------------------------------------------------CTTGGGCSEEEEETHH
T ss_pred CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHH
Confidence 444444333210 00011346999999999
Q ss_pred HHHH-HHHhhh----cCCCCccceEEEcccccccc
Q 000107 627 ANSL-VNRMLE----EGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 627 l~~L-l~~l~~----~~~L~~l~lVVIDEaH~l~d 656 (2191)
+.+- .++... ...+.+..+|||||+|.+.+
T Consensus 155 l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 155 LFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp HHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred hcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 7653 332211 11356789999999999943
No 95
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.32 E-value=3.4e-16 Score=174.13 Aligned_cols=113 Identities=21% Similarity=0.337 Sum_probs=98.3
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.++++||||+++..|+.++..|... +.++.++||+|++.+
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----------------------------------------~~~~~~~~g~~~~~~ 68 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----------------------------------------GINNCYLEGEMVQGK 68 (170)
Confidence 3578999999999999888777431 223788999999999
Q ss_pred HHHHHHHhhcCCceEEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCceEEEEEeChhhHHH
Q 000107 858 REVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESMLICKPEEVKK 936 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~Ge~ill~~~~e~~~ 936 (2191)
|..+++.|++|.++|||||+++++|+|+|++++||+++.+. +...|.||+|||||.| ..|.+++++.+.+...
T Consensus 69 r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~----~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 69 RNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPR----SGDTYLHRIGRTARAG--RKGTAISLVEAHDHLL 141 (170)
Confidence 99999999999999999999999999999999999876543 8889999999999998 6899999998866444
No 96
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.54 E-value=3e-14 Score=167.13 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=94.0
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCe-E
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRH-V 601 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~-V 601 (2191)
..|+++|.+++.. ++.++++++++|||+|||+++..++.. .+.++||++|+++|+.|..+.+.+ +++. +
T Consensus 92 ~~l~~~Q~~ai~~--~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~----~~~~~v 161 (237)
T 2fz4_A 92 ISLRDYQEKALER--WLVDKRGCIVLPTGSGKTHVAMAAINE----LSTPTLIVVPTLALAEQWKERLGI----FGEEYV 161 (237)
T ss_dssp CCCCHHHHHHHHH--HTTTSEEEEEESSSTTHHHHHHHHHHH----SCSCEEEEESSHHHHHHHHHHHGG----GCGGGE
T ss_pred CCcCHHHHHHHHH--HHhCCCEEEEeCCCCCHHHHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHh----CCCCeE
Confidence 3799999999986 888889999999999999999877654 378899999999999999988766 3677 7
Q ss_pred EEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccccc
Q 000107 602 RSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ 657 (2191)
Q Consensus 602 ~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~ 657 (2191)
..+.|+.. ...+|+|+|++.+......+ ...+++|||||+|++.+.
T Consensus 162 ~~~~g~~~-----~~~~i~v~T~~~l~~~~~~~-----~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 162 GEFSGRIK-----ELKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp EEESSSCB-----CCCSEEEEEHHHHHHTHHHH-----TTTCSEEEEECSSCCCTT
T ss_pred EEEeCCCC-----CcCCEEEEeHHHHHhhHHHh-----cccCCEEEEECCccCCCh
Confidence 77776542 35689999999876554432 245899999999999765
No 97
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.48 E-value=1.8e-12 Score=170.10 Aligned_cols=132 Identities=18% Similarity=0.088 Sum_probs=99.5
Q ss_pred CCCCCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccC
Q 000107 521 GISKLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLG 598 (2191)
Q Consensus 521 Gi~~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg 598 (2191)
|| +++|.|.+.+.. ..+..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+++..+....+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE----VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 44 689999997653 23557999999999999999999999987 478999999999999999988887766667
Q ss_pred CeEEEEeccCCC---C----------------------------------------------------CCCCCCceEEEc
Q 000107 599 RHVRSYYGNQGG---G----------------------------------------------------SLPKDTSVAVCT 623 (2191)
Q Consensus 599 ~~V~~~~G~~~~---~----------------------------------------------------~l~~~~~IiV~T 623 (2191)
+++..+.|...- . ......+|+|||
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 888777663210 0 001246999999
Q ss_pred hHHHHHHHHHhhhcCCCCccceEEEcccccccccch
Q 000107 624 IEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQNR 659 (2191)
Q Consensus 624 pEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~R 659 (2191)
+..+.+...+. ......+..+|||||||.+.+ .+
T Consensus 156 ~~~l~~~~~~~-~~~~~~~~~~vIiDEAHnl~d-~~ 189 (551)
T 3crv_A 156 YPYFFIDRYRE-FIDIDLREYMIVIDEAHNLDK-VN 189 (551)
T ss_dssp THHHHCHHHHT-TSCCCSTTEEEEETTGGGGGG-GG
T ss_pred chHhcCHHHHH-hcCCCcCCeEEEEecccchHH-HH
Confidence 99976653321 112224678999999999988 44
No 98
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.27 E-value=2.3e-11 Score=152.06 Aligned_cols=189 Identities=10% Similarity=0.063 Sum_probs=135.9
Q ss_pred ceeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCC
Q 000107 1489 INAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSS 1568 (2191)
Q Consensus 1489 i~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~ 1568 (2191)
+.++++...+..+++.+...+.++||+|+.+.. ...-.+.++.||.++ .+|.+... .. .
T Consensus 3 ~~~I~t~~~l~~~~~~l~~~~~va~D~E~~~~~----~~~~~l~liqla~~~-~~~lid~~-~l---~------------ 61 (375)
T 1yt3_A 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTR----TYYPQLGLIQLFDGE-HLALIDPL-GI---T------------ 61 (375)
T ss_dssp CEEECSHHHHHHHHHHHTTSSEEEEEEEEECCS----CSSCEEEEEEEECSS-CEEEECGG-GC---S------------
T ss_pred eEEeCCHHHHHHHHHHHcCCCeEEEEeeecCCC----cCCCceEEEEEecCC-cEEEEeCC-CC---C------------
Confidence 345666778888898887778899999976321 111258888998744 34443311 00 0
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCccccccccccccccccccccccC
Q 000107 1569 DKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPV 1647 (2191)
Q Consensus 1569 ~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1647 (2191)
.+..|+++|+++.+.|++||+|+|+.+|.+ +|+.+.+
T Consensus 62 ----------------~~~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi~~~~-------------------------- 99 (375)
T 1yt3_A 62 ----------------DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP-------------------------- 99 (375)
T ss_dssp ----------------CCHHHHHHHHCTTSEEEESSCHHHHHHHHHHHSSCCSS--------------------------
T ss_pred ----------------ChHHHHHHHcCCCceEEEeeHHHHHHHHHHHcCCCCCc--------------------------
Confidence 024588899999999999999999999976 7876542
Q ss_pred CCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhh-hhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1648 HLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKN-QMRRAAHNGCCRRVAQTRALCSVLWKLL 1726 (2191)
Q Consensus 1648 ~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~-~~~~~~~~ya~~Da~~t~~L~~~L~~~L 1726 (2191)
.|||++|+||++|. ..++ |..++.++++....+.. +...|.. ++...+..||+.||.+++.||..|..+|
T Consensus 100 ----~fDt~lAa~lL~~~-~~~~---L~~L~~~~l~~~l~K~~-~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L 170 (375)
T 1yt3_A 100 ----LIDTQILAAFCGRP-MSWG---FASMVEEYSGVTLDKSE-SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET 170 (375)
T ss_dssp ----EEEHHHHHHHTTCC-TTCC---HHHHHHHHHCCCCCCTT-TTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ----EEEcHHHHHHcCCC-CChh---HHHHHHHHcCCCCCCCc-ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999993 4565 55556666654432211 1223432 3444578899999999999999999999
Q ss_pred HHHHHHHH-HHhhhhhHHHHHHHH
Q 000107 1727 VSEELIEA-LLNIEIPLVNVLADM 1749 (2191)
Q Consensus 1727 ~~~~L~~l-~~~iEmpl~~vLa~M 1749 (2191)
.+.++.++ |.++|||+..+...+
T Consensus 171 ~~~g~~~l~~~e~E~pl~~~~~~~ 194 (375)
T 1yt3_A 171 EASGWLPAALDECRLMQMRRQEVV 194 (375)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHcCcHHHHHHHHHHHHhhcccCC
Confidence 99888888 999999999887543
No 99
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.16 E-value=7.9e-11 Score=147.97 Aligned_cols=174 Identities=9% Similarity=0.040 Sum_probs=128.3
Q ss_pred CCCceeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhcc
Q 000107 1486 KGPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIY 1565 (2191)
Q Consensus 1486 ~~~i~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~ 1565 (2191)
..++.+|++.+.+..+++.+...+.++||+|+.+. ....-.+++|+||+.+ .+|+|......
T Consensus 107 ~~~y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~----~~~~~~l~lIQLa~~~-~~~lidpl~l~------------- 168 (428)
T 3saf_A 107 ETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSY----RSFLGLTCLMQISTRT-EDFIIDTLELR------------- 168 (428)
T ss_dssp GSCEEEECSHHHHHHHHHHHTTCSEEEEEEEEECT----TCSSCEEEEEEEECSS-CEEEEETTTTG-------------
T ss_pred CCCcEEECCHHHHHHHHHHHhcCCeEEEEEEecCC----CCCCCeEEEEEEEeCC-cEEEEEeccch-------------
Confidence 35567899999999999999999999999998532 1112258899999866 45665542110
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHH-hcCcccccccCcccccccccccccccccccc
Q 000107 1566 GSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLK-HAAVSIQRFGGLNLVGTSLGLENVGSSFLLL 1644 (2191)
Q Consensus 1566 ~~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~-~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1644 (2191)
..+..|+++|+++.+.||+||+|+|+.+|. .+|+.+.+
T Consensus 169 ------------------~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~----------------------- 207 (428)
T 3saf_A 169 ------------------SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVN----------------------- 207 (428)
T ss_dssp ------------------GGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSS-----------------------
T ss_pred ------------------hhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCc-----------------------
Confidence 012357889999999999999999999995 77876542
Q ss_pred ccCCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCch-hhhhHHHHhhhHHHHHHHHHHHHHHHH
Q 000107 1645 SPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRW-KNQMRRAAHNGCCRRVAQTRALCSVLW 1723 (2191)
Q Consensus 1645 ~~~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~-~~~~~~~~~~ya~~Da~~t~~L~~~L~ 1723 (2191)
.||||+|+|+++++ .+ +|+.++.++++.+..+... ...| ...+...+..||+.||.+++.||..|.
T Consensus 208 -------~fDT~lAa~lL~~~--~~---gL~~Lv~~~Lg~~l~K~~~-~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~ 274 (428)
T 3saf_A 208 -------MFDTHQAARLLNLG--RH---SLDHLLKLYCNVDSNKQYQ-LADWRIRPLPEEMLSYARDDTHYLLYIYDKMR 274 (428)
T ss_dssp -------EEEHHHHHHHTTCS--CC---SHHHHHHHHHCCCCCCTTT-TSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred -------eeechhHHHHhCCC--CC---CHHHHHHHHcCCCCCcccc-ccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999985 35 4666677777765432222 2234 344556677899999999999999999
Q ss_pred HHHHHHHH
Q 000107 1724 KLLVSEEL 1731 (2191)
Q Consensus 1724 ~~L~~~~L 1731 (2191)
.+|.+.+.
T Consensus 275 ~~L~~~g~ 282 (428)
T 3saf_A 275 LEMWERGN 282 (428)
T ss_dssp HHHHHHTT
T ss_pred HHHHhcCC
Confidence 99987653
No 100
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.13 E-value=1.6e-10 Score=138.18 Aligned_cols=124 Identities=17% Similarity=0.192 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCc
Q 000107 766 DHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSG 845 (2191)
Q Consensus 766 d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~G 845 (2191)
..+..++.+....+.++||||.++..++.++..|.... +..
T Consensus 99 ~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~---------------------------------------g~~ 139 (271)
T 1z5z_A 99 IRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL---------------------------------------NTE 139 (271)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH---------------------------------------CSC
T ss_pred HHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc---------------------------------------CCc
Confidence 45566777777778999999999998887777765421 112
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcC-Cce-EEEecccccccCCCCCceEEeecCCCCCcccCcccccccccccCCCCCCCce
Q 000107 846 VAYHHAGLTVEEREVVETCYRKG-LVR-VLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKG 923 (2191)
Q Consensus 846 Va~hHagLs~~eR~~Ve~~Fr~G-~ik-VLVATstLa~GVNLPav~VVI~~p~~g~~~is~~~y~QmiGRAGR~G~d~~G 923 (2191)
+..+||+++..+|..+++.|++| .++ +|++|.++++|+|++++.+||.++.+. ++..|.|++||++|.|.....
T Consensus 140 ~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~w----np~~~~Q~~gR~~R~Gq~~~v 215 (271)
T 1z5z_A 140 VPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWW----NPAVEDQATDRVYRIGQTRNV 215 (271)
T ss_dssp CCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCS----CTTTC--------------CC
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCC----ChhHHHHHHHhccccCCCCce
Confidence 66799999999999999999998 777 789999999999999999999876654 888999999999999976666
Q ss_pred EEEEEeChh
Q 000107 924 ESMLICKPE 932 (2191)
Q Consensus 924 e~ill~~~~ 932 (2191)
.+|.++...
T Consensus 216 ~v~~li~~~ 224 (271)
T 1z5z_A 216 IVHKLISVG 224 (271)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeeCC
Confidence 667666654
No 101
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.13 E-value=1.6e-10 Score=132.71 Aligned_cols=182 Identities=14% Similarity=0.107 Sum_probs=122.6
Q ss_pred CCCceeccCcccHH----HHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccc
Q 000107 1486 KGPINAINASGGFD----CFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDR 1561 (2191)
Q Consensus 1486 ~~~i~~v~~~~~~~----~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~ 1561 (2191)
.|+|.++++...+. .+++.+...+.++||+|..+.-. ....-.+.++.+|+.++.+||+++.+.. .
T Consensus 14 ~g~i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~--~~~~~~~~~iqla~~~~~~~~i~~~~~~---~----- 83 (208)
T 2e6m_A 14 PGSIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYK--PGKRSRVAVIQLCVSESKCYLFHISSMS---V----- 83 (208)
T ss_dssp CSEEEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC-----CCSCCCCCEEEEECSSSEEEEECGGGCS---S-----
T ss_pred CCcEEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCC--CCCCCCeEEEEEecCCCeEEEEECcccc---c-----
Confidence 46788999988887 55566666677999998753200 0112257889999876788999874210 0
Q ss_pred hhccCCCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCcccccccccccccccc
Q 000107 1562 FLIYGSSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSS 1640 (2191)
Q Consensus 1562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~ 1640 (2191)
..+.|+++|+++.+.|++||+|+|+.+|++ +|+.+.+
T Consensus 84 -----------------------~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~------------------- 121 (208)
T 2e6m_A 84 -----------------------FPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLES------------------- 121 (208)
T ss_dssp -----------------------CCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCS-------------------
T ss_pred -----------------------chHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCC-------------------
Confidence 013588899999999999999999999987 7886653
Q ss_pred ccccccCCCCccch-HHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHH-hhccCchhh-hhHHHHhhhHHHHHHHHHH
Q 000107 1641 FLLLSPVHLKDGID-MCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAA-ANRSGRWKN-QMRRAAHNGCCRRVAQTRA 1717 (2191)
Q Consensus 1641 ~~~~~~~~~~~~~D-t~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~-~~~~g~~~~-~~~~~~~~ya~~Da~~t~~ 1717 (2191)
.|| |++|+||++| ...++ |..++.++++....+. ..+...|.. ++...+..||+.||.++++
T Consensus 122 -----------~fDlt~lAayll~~-~~~~~---L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~ 186 (208)
T 2e6m_A 122 -----------FVELTDVANEKLKC-AETWS---LNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLI 186 (208)
T ss_dssp -----------EEEHHHHHHHHTTC-CCCCC---HHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred -----------EEEHHHHHHHHccC-CCChh---HHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 489 9999999999 44565 4455555554332100 012344543 4445578899999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000107 1718 LCSVLWKLLVSEELIEA 1734 (2191)
Q Consensus 1718 L~~~L~~~L~~~~L~~l 1734 (2191)
|+..|.++|++.+....
T Consensus 187 L~~~L~~~L~~~~~~~~ 203 (208)
T 2e6m_A 187 IYQKLGNLGDTVQVFAL 203 (208)
T ss_dssp HHHHHHTCC--------
T ss_pred HHHHHHhccchhhhhhh
Confidence 99999999987765543
No 102
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=99.12 E-value=9.7e-11 Score=143.75 Aligned_cols=190 Identities=15% Similarity=0.130 Sum_probs=140.3
Q ss_pred CccCCCHHHHHHHhcCCChhhHHHHHHHHhhhcccccccCccceeeeeccCCCCCCCcHHHHHHHHHhhhhhhhhhhccc
Q 000107 1020 KLYSTTPLGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLSTPINVEVEPDWELYYERFLELSALDQSVGNQV 1099 (2191)
Q Consensus 1020 ~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~~a~~~~vl~~dlhllylvtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~ 1099 (2191)
+.+.+|++|+.++..||++.++..+...|+.. .++..+|.+++-. +++..+..+.+
T Consensus 7 ~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~------~~~~~lL~ils~a-----~Ef~~i~vR~~------------- 62 (328)
T 3im1_A 7 EIISTLSNGLIASHYGVSFFTIQSFVSSLSNT------STLKNMLYVLSTA-----VEFESVPLRKG------------- 62 (328)
T ss_dssp CCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTT------CCHHHHHHHHHTC-----GGGGGSCCCTT-------------
T ss_pred CCccCCchhHHHHHHCCCHHHHHHHHHHhccc------CCHHHHHHHhccH-----HHHHhcccCcc-------------
Confidence 45899999999999999999988877777542 1333444444432 12111100000
Q ss_pred CCCHHHHHHHhcCCCccccccccccccCccchhhhhhccccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhC
Q 000107 1100 GVSEPYLMRMAHGAPMRISSKLRDSTKGLHGKLEYRLGITSNNMLSDAQTLRVCKRFYVALILSRLVQETPVLEVCETFK 1179 (2191)
Q Consensus 1100 Gv~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~ 1179 (2191)
.+..+.++....+..... + .... + ..+++.++|++|+++.++.. .|
T Consensus 63 --E~~~l~~L~~~~~~~~~~--------------~------~~~~--~------~~~K~~lLLqa~isr~~l~~---~l- 108 (328)
T 3im1_A 63 --DRALLVKLSKRLPLRFPE--------------H------TSSG--S------VSFKVFLLLQAYFSRLELPV---DF- 108 (328)
T ss_dssp --HHHHHHHHHTTSSSCCCT--------------T------SCSS--S------HHHHHHHHHHHHHHTCCCCH---HH-
T ss_pred --hHHHHHHHHHhCCCcccc--------------c------CCCC--C------HHHHHHHHHHHHHCCCCCCh---HH-
Confidence 112233343333221100 0 0000 0 23459999999999998865 33
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHH
Q 000107 1180 VARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIA 1259 (2191)
Q Consensus 1180 v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la 1259 (2191)
.||...+.++|.|+..++..+|...||.. ...+-.+.+++.+|++++..||++||||++.+||+|+++|++|+.||+
T Consensus 109 --~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~ 185 (328)
T 3im1_A 109 --QNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIM 185 (328)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeCCCCCCHHHHHHHHhCCCCCHHHHh
Confidence 79999999999999999999999999988 888899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHH
Q 000107 1260 EASISEIVKAL 1270 (2191)
Q Consensus 1260 ~a~~~~l~~~l 1270 (2191)
.++++++..++
T Consensus 186 ~~~~~e~~~ll 196 (328)
T 3im1_A 186 ALEDEERDEIL 196 (328)
T ss_dssp HSCHHHHHHHC
T ss_pred cCCHHHHHhHh
Confidence 99999999886
No 103
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=98.93 E-value=5.9e-09 Score=128.46 Aligned_cols=188 Identities=14% Similarity=0.167 Sum_probs=112.1
Q ss_pred eccCCCCCCCcHHHHHHHHHhhhhhhhhhhcccCCCHHHHHHHhcCC-CccccccccccccCccchhhhhhccccCCCcc
Q 000107 1067 STPINVEVEPDWELYYERFLELSALDQSVGNQVGVSEPYLMRMAHGA-PMRISSKLRDSTKGLHGKLEYRLGITSNNMLS 1145 (2191)
Q Consensus 1067 vtp~~~~~~~dw~~~~~~~~~l~~~~~~v~~~~Gv~e~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1145 (2191)
+.|++.|.+.. +||..+.++..+.+.+.... ++.-+.++.... .+.. -..|.+....-.++.+...+.-.. ..
T Consensus 13 l~~t~lGriaS--~yYi~~~T~~~f~~~l~~~~--~~~~lL~ils~a~EF~~-i~vR~~E~~~l~~L~~~~~~~~~~-~~ 86 (339)
T 2q0z_X 13 VAPLNLGMIAA--YYYINYTTIELFSMSLNAKT--KVRGLIEIISNAAEYEN-IPIRHHEDNLLRQLAQKVPHKLNN-PK 86 (339)
T ss_dssp --------------------------------C--CHHHHHHHHHTSGGGTT-CCCCTTCHHHHHHHHHHSSSCCSS-CC
T ss_pred eccCcHHHHHH--HHCCCHHHHHHHHHHhcccC--CHHHHHHHHhchHHHhc-CCCCcchHHHHHHHHHhCCCcccc-CC
Confidence 56777777777 89999999988876665532 222233332221 1110 011111111111222111110000 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc
Q 000107 1146 DAQTLRVCKRFYVALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFG 1225 (2191)
Q Consensus 1146 ~~~~~~~~~rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~G 1225 (2191)
.+ . ..+++.++|++|+++.++. + .| .+|...+.++|.|+..++..+|...||......+-.|.++|.+|
T Consensus 87 ~~---~--~~~K~~lLLqa~isr~~l~-~--~l---~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~ 155 (339)
T 2q0z_X 87 FN---D--PHVKTNLLLQAHLSRMQLS-A--EL---QSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQA 155 (339)
T ss_dssp TT---C--HHHHHHHHHHHHHTTCCCC-H--HH---HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHT
T ss_pred CC---C--HHHHHHHHHHHHHcCCCCC-h--HH---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 01 1 2356999999999999886 4 55 79999999999999999999999999988888899999999999
Q ss_pred CchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHh
Q 000107 1226 VRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALF 1271 (2191)
Q Consensus 1226 v~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~ 1271 (2191)
++++..||++||+|++.+||+|+++|++|+.+|+.++++++..+|.
T Consensus 156 ~w~~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~ 201 (339)
T 2q0z_X 156 MWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQ 201 (339)
T ss_dssp CCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHC
T ss_pred cCCCCCceecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998873
No 104
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=98.92 E-value=3.4e-09 Score=133.40 Aligned_cols=175 Identities=11% Similarity=0.105 Sum_probs=123.3
Q ss_pred CCceeccCcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccC
Q 000107 1487 GPINAINASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYG 1566 (2191)
Q Consensus 1487 ~~i~~v~~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~ 1566 (2191)
+++.++++...+..+++.+.....++||+|+.+.. ...-.+.++.||+.+ .+|.+... .. .
T Consensus 85 ~~~~~I~t~~~L~~~~~~L~~~~~vavDtE~~~~~----~~~~~l~liQla~~~-~~ylid~l-~l---~---------- 145 (410)
T 2hbj_A 85 SVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYR----SYYGIVCLMQISTRE-RDYLVDTL-KL---R---------- 145 (410)
T ss_dssp CCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSS----SSSCEEEEEEEECSS-CEEEEETT-TT---T----------
T ss_pred CCcEEeCCHHHHHHHHHHHhhCCceEEEeeecCCc----CCCCcEEEEEEEECC-cEEEEech-hh---h----------
Confidence 34667777788888899887778899999875321 112258888999744 45555421 00 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCccccccccccccccccccccc
Q 000107 1567 SSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSSFLLLS 1645 (2191)
Q Consensus 1567 ~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1645 (2191)
..+..|+++|+++.+.||+||+|+|+.+|.+ +|+.+.+
T Consensus 146 -----------------~~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~------------------------ 184 (410)
T 2hbj_A 146 -----------------ENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVG------------------------ 184 (410)
T ss_dssp -----------------TTGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSS------------------------
T ss_pred -----------------hhHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCC------------------------
Confidence 0123478899999999999999999999976 7876543
Q ss_pred cCCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhh-hhHHHHhhhHHHHHHHHHHHHHHHHH
Q 000107 1646 PVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKN-QMRRAAHNGCCRRVAQTRALCSVLWK 1724 (2191)
Q Consensus 1646 ~~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~-~~~~~~~~ya~~Da~~t~~L~~~L~~ 1724 (2191)
.|||++|+|||++. .++ |..++.++++....+.. +...|.. .+...+..||+.||.+++.||..|..
T Consensus 185 ------~fDt~lAa~LL~~~--~~~---L~~L~~~~lg~~l~K~~-~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~ 252 (410)
T 2hbj_A 185 ------LFDTYHASKAIGLP--RHS---LAYLLENFANFKTSKKY-QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRN 252 (410)
T ss_dssp ------EEEHHHHHHHHTCS--CCS---HHHHHHHHSCCCCCCTT-TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ------EEEcHHHHHHhCCC--ccC---HHHHHHHHcCCCCCccc-cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999986 454 55566777665432111 1224443 44446789999999999999999999
Q ss_pred HHHHHHHHH
Q 000107 1725 LLVSEELIE 1733 (2191)
Q Consensus 1725 ~L~~~~L~~ 1733 (2191)
+|.+.+++.
T Consensus 253 ~L~~~g~~~ 261 (410)
T 2hbj_A 253 KLIESNKLA 261 (410)
T ss_dssp HHHHTTCHH
T ss_pred HHHhcCchH
Confidence 998766543
No 105
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=98.77 E-value=2.6e-08 Score=126.38 Aligned_cols=178 Identities=13% Similarity=0.066 Sum_probs=123.5
Q ss_pred CceeccCcccHHHHHHHHhhC-CeEEEEeeccCCcccCCCccceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccC
Q 000107 1488 PINAINASGGFDCFLDRWEAT-HEFYFDIHYDKHSEANSGVLFEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYG 1566 (2191)
Q Consensus 1488 ~i~~v~~~~~~~~~l~~~~~~-~~~afD~e~~~~~~~~s~~~~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~ 1566 (2191)
...++++.+.+..+++.+... +.++||+|+.+.. ...-.++++.||+.++.+|||... .. +. .
T Consensus 17 ~~~~I~t~e~L~~~~~~L~~~~~~vavDtE~~~~~----~~~~~l~liQla~~~~~~~lid~l-~~-----~~-~----- 80 (440)
T 3cym_A 17 VPNVIDTLPAFRDYCSELASSHGSLAADAERASGF----RYGHEDWLVQFKRDGAGIGLLDPQ-AL-----AA-A----- 80 (440)
T ss_dssp CCCEECSHHHHHHHHHHHHSCEEEEEEEEEECTTT----SSSCCEEEEEEEEETTEEEEECHH-HH-----HH-T-----
T ss_pred CCEeeCCHHHHHHHHHHHHhcCCeEEEEeeecCCC----CCCCCEEEEEEEECCCcEEEEEcC-Cc-----cc-c-----
Confidence 335666778888889888776 7799999876321 112258899999877778887420 00 00 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCcccccccccccccccccccccc
Q 000107 1567 SSDKNVLTPEHQLEMIKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSP 1646 (2191)
Q Consensus 1567 ~~~~~~~~~~~~~~~~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1646 (2191)
...+..|+++|+++ .|++||+|+|+.+|..+|+.+..
T Consensus 81 ----------------~~~l~~L~~lL~d~--~KV~h~~k~Dl~~L~~~gi~~~~------------------------- 117 (440)
T 3cym_A 81 ----------------GADWNDFNRAVGDA--VWILHDSLQDLPGFDELGMEPQR------------------------- 117 (440)
T ss_dssp ----------------TCCHHHHHHHHTTC--EEEESSHHHHHHHHHHHTCCCCE-------------------------
T ss_pred ----------------ccCHHHHHHHHCCC--CEEEEcCHHHHHHHHHcCCcCCc-------------------------
Confidence 00135688899986 69999999999999877775442
Q ss_pred CCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhh-hhHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000107 1647 VHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKN-QMRRAAHNGCCRRVAQTRALCSVLWKL 1725 (2191)
Q Consensus 1647 ~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~-~~~~~~~~ya~~Da~~t~~L~~~L~~~ 1725 (2191)
.|||++|+|||++. .++ |..++..+++....+.. +...|.. .+......||+.||.+++.||..|..+
T Consensus 118 -----~fDt~lAa~lL~~~--~~g---L~~L~~~~lg~~~~K~~-~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 118 -----LFDTEIAARLLGLK--RFG---LAAVTEHFLGLTLAKEH-SAADWSYRPLPRDWRNYAALDVELLIELETKMRAE 186 (440)
T ss_dssp -----EEEHHHHHHHTTCS--SCS---HHHHHHHHHCEECCCCC-TTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred -----eehHHHHHHHhCCC--CCC---HHHHHHHHhCCCccccc-ccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999983 565 55556666654432211 1223432 344467889999999999999999999
Q ss_pred HHHHHHHHHH
Q 000107 1726 LVSEELIEAL 1735 (2191)
Q Consensus 1726 L~~~~L~~l~ 1735 (2191)
|.+.++.+++
T Consensus 187 L~~~g~~~l~ 196 (440)
T 3cym_A 187 LKRQGKMEWA 196 (440)
T ss_dssp HHHHTCHHHH
T ss_pred HHHcCcHHHH
Confidence 9988776654
No 106
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.10 E-value=3.5e-06 Score=111.82 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=69.5
Q ss_pred CCCHHHHHhhhh--cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeE
Q 000107 524 KLYPWQVECLHV--DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 524 ~l~p~Q~eal~~--~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
+++|.|.+.+.. ..+..|+++++.||||+|||++|++|++..+...+.+++|++||++++.|+.+.+..+....++++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~ 82 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRA 82 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEE
Confidence 579999998752 125679999999999999999999999998877789999999999999999999988876666776
Q ss_pred EEEec
Q 000107 602 RSYYG 606 (2191)
Q Consensus 602 ~~~~G 606 (2191)
..+.|
T Consensus 83 ~~l~g 87 (620)
T 4a15_A 83 IPMQG 87 (620)
T ss_dssp EECCC
T ss_pred EEEEC
Confidence 66554
No 107
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=98.00 E-value=6.1e-05 Score=85.98 Aligned_cols=154 Identities=11% Similarity=0.145 Sum_probs=100.4
Q ss_pred hhCCeEEEEeeccCCcc---cCCCcc-ceEEEEEEEEeCCcEEEEeCCCCcccccccccchhccCCCCCCCCChhhHHHH
Q 000107 1506 EATHEFYFDIHYDKHSE---ANSGVL-FEIHGLAVCWENSPVYYVNLPKDLWSDHRRKDRFLIYGSSDKNVLTPEHQLEM 1581 (2191)
Q Consensus 1506 ~~~~~~afD~e~~~~~~---~~s~~~-~~i~Gia~~~~~~~ayYi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1581 (2191)
.....++||+|+..... .....+ .++.-|.+|.++. ++.+.+. +.. +
T Consensus 44 ~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~-~~l~~l~-~~~--~------------------------- 94 (206)
T 1vk0_A 44 NGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNL-CLFLRLP-KPF--H------------------------- 94 (206)
T ss_dssp HSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSE-EEEEECC-SSC--C-------------------------
T ss_pred cCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCC-eEEEecc-ccC--C-------------------------
Confidence 44567999999863210 000111 2566677886554 6656652 110 0
Q ss_pred HHHHHHHHHHhhccCCccEEEechHHHHHHHHh-cCcccccccCccccccccccccccccccccccCCCCccchHH-HHH
Q 000107 1582 IKQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKH-AAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMC-IVS 1659 (2191)
Q Consensus 1582 ~~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~-lAa 1659 (2191)
..+..|.++|+++++.|++|.+++|+..|++ +|+.+.+ .+|+. +|+
T Consensus 95 --~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~------------------------------~~Dl~~la~ 142 (206)
T 1vk0_A 95 --DNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRN------------------------------AINVGKLAA 142 (206)
T ss_dssp --GGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSS------------------------------EEEHHHHHH
T ss_pred --ccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCC------------------------------eeeHHHHHH
Confidence 0123478899999999999999999999976 5665443 58975 776
Q ss_pred HhcC-CCCCCCCchhHHHHHHHhhChHH-HHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Q 000107 1660 WILW-PDDERSSNPNLEKEVKKRLSSEA-AAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWK 1724 (2191)
Q Consensus 1660 wLL~-P~~~~~~l~~L~~~~~~~l~~e~-~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~ 1724 (2191)
-++. |..... +|..++..+++.+. .+.. +.+.|..++.+.+..||+.||.+.+.+|..|.+
T Consensus 143 ~~lg~~~~~~~---gL~~Lv~~~lg~~lK~k~~-~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 143 EARGTLVLEFL---GTRELAHRVLWSDLGQLDS-IEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHTCGGGGGC---CHHHHHHHHHCCCCHHHHH-HHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCc---cHHHHHHHHhCCcCCCCCc-ccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6553 322334 46667777777666 2222 344565588888999999999999999988753
No 108
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.99 E-value=7.3e-06 Score=108.65 Aligned_cols=72 Identities=24% Similarity=0.211 Sum_probs=56.3
Q ss_pred CHHHHHhhhhcccccCCeEEEEcCCCCchhHH--HHHHHHHHHH-hcCCEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 526 YPWQVECLHVDGVLQRRNLVYCASTSAGKSFV--AEILMLRRLI-STGKMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 526 ~p~Q~eal~~~~il~gknlIi~APTGSGKTlv--ael~iL~~ll-~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
.++|.+++.. ++.++.+++.||+|+|||++ +.+.++..+. ..+.++++++||..+|.++.+.+......+++
T Consensus 151 ~~~Q~~Ai~~--~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l 225 (608)
T 1w36_D 151 INWQKVAAAV--ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 (608)
T ss_dssp CCHHHHHHHH--HHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC
T ss_pred CHHHHHHHHH--HhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC
Confidence 7899999987 78899999999999999944 4455554332 24568999999999999998887766555543
No 109
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.29 E-value=0.00068 Score=86.94 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=52.8
Q ss_pred HHHcCCCCCCHHHHHhhhhc--ccccC-CeEEEEcCCCCchhHHHHHHHHHHHHhcCC-EEEEEchhHHHHHHHHHHH
Q 000107 517 YKKRGISKLYPWQVECLHVD--GVLQR-RNLVYCASTSAGKSFVAEILMLRRLISTGK-MALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 517 l~~~Gi~~l~p~Q~eal~~~--~il~g-knlIi~APTGSGKTlvael~iL~~ll~~g~-kaL~I~P~raLA~q~~~~l 590 (2191)
|....|..|++-|.+++... .+..+ .++++.|+.|+|||.+. ..++..+...+. .+++++||...|.++.+.+
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 45577899999999999751 12222 49999999999999876 455556666665 7999999988887765443
No 110
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=97.27 E-value=0.00023 Score=66.91 Aligned_cols=55 Identities=22% Similarity=0.162 Sum_probs=49.6
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARK 1298 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~ 1298 (2191)
+|.+||||+..-|.+|.++||+|++|||.+++++|..+. +++...|.+|+..||+
T Consensus 8 ~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~------------gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE------------GLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSS------------SCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcc------------CCCHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999973 5667789999999987
No 111
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.27 E-value=0.00044 Score=90.86 Aligned_cols=62 Identities=21% Similarity=0.097 Sum_probs=51.9
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHH
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAE 588 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~ 588 (2191)
.+++.|.+++.. ++.++.+++.||.|+|||++. ..++..+...+.++++++||...+....+
T Consensus 189 ~L~~~Q~~Av~~--~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQ--LAGHRLVVLTGGPGTGKSTTT-KAVADLAESLGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHH--HTTCSEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHH--HHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEecCcHHHHHHhHh
Confidence 689999999986 778899999999999999875 34556666678899999999888876654
No 112
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=97.18 E-value=0.00065 Score=79.21 Aligned_cols=184 Identities=9% Similarity=0.014 Sum_probs=95.3
Q ss_pred CcccHHHHHHHHhhCCeEEEEeeccCCcccCCCccceEEEEEEEE-e---CCc-----EEEEeCCCC-cccccccccchh
Q 000107 1494 ASGGFDCFLDRWEATHEFYFDIHYDKHSEANSGVLFEIHGLAVCW-E---NSP-----VYYVNLPKD-LWSDHRRKDRFL 1563 (2191)
Q Consensus 1494 ~~~~~~~~l~~~~~~~~~afD~e~~~~~~~~s~~~~~i~Gia~~~-~---~~~-----ayYi~l~~~-~~~~~~~~~~~~ 1563 (2191)
+...+..+...+.....+.||+|+++. .+...+|+.|++.. . ++. .|+.-+... ....+.. ...
T Consensus 23 ~~~~~~~l~~~l~~~~~vviD~ETTGl----~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~--~~~ 96 (235)
T 3v9w_A 23 DNAQLTGLCDRFRGFYPVVIDVETAGF----NAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPE--ALA 96 (235)
T ss_dssp ------CHHHHTTTEEEEEEEEEESSS----CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHH--HHH
T ss_pred ccccccCchhcccCCcEEEEEEeCCCC----CCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHH--HHH
Confidence 344455566777777889999999864 22345677776553 2 232 344333211 0000000 000
Q ss_pred ccCCCCCC-CCChhhHHHHHHHHHHHHHHhhcc-------CCccEEEechHHHHHHHHhc----CcccccccCccccccc
Q 000107 1564 IYGSSDKN-VLTPEHQLEMIKQRWKRIGEIMEK-------RDVRKFTWNMKVQIQVLKHA----AVSIQRFGGLNLVGTS 1631 (2191)
Q Consensus 1564 ~~~~~~~~-~~~~~~~~~~~~~~~~~L~~lLe~-------~~v~kv~hNlK~dl~vL~~~----gi~l~~~~~~~~~~~~ 1631 (2191)
.....+. .+...- .+.+.+..+.+++.+ .+..+|+||++||+.+|++. |+....+
T Consensus 97 -i~GIt~e~~v~~~~---~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~--------- 163 (235)
T 3v9w_A 97 -FNGIDPNDPDRGAV---SGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPF--------- 163 (235)
T ss_dssp -HHCCCTTCGGGCCB---CHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCE---------
T ss_pred -HhCCCHHHHHhcCC---CHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCC---------
Confidence 0000000 000000 012344455555542 46789999999999998653 4422110
Q ss_pred cccccccccccccccCCCCccchHHHHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHH
Q 000107 1632 LGLENVGSSFLLLSPVHLKDGIDMCIVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRR 1711 (2191)
Q Consensus 1632 ~~~~~~~~~~~~~~~~~~~~~~Dt~lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~D 1711 (2191)
....++||+.+++++.|. ++ |..++..+ +.+. .+ ....+|..|
T Consensus 164 ----------------~~~~~~Dt~~la~~~~p~---~~---L~~l~~~~-gi~~------~~--------~~~H~Al~D 206 (235)
T 3v9w_A 164 ----------------HPFATFDTAALAGLALGQ---TV---LSKACQTA-GMDF------DS--------TQAHSALYD 206 (235)
T ss_dssp ----------------EEEEEEEHHHHHHHHHSC---CS---HHHHHHHH-TCCC------CT--------TTTTCHHHH
T ss_pred ----------------CCCcEEEhHHHHHHHhCC---CC---HHHHHHHc-CCCC------CC--------CCCcChHHH
Confidence 001358999999999884 33 44444332 2110 00 124578899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000107 1712 VAQTRALCSVLWKLLVSEELIE 1733 (2191)
Q Consensus 1712 a~~t~~L~~~L~~~L~~~~L~~ 1733 (2191)
|.+|.+|+..+.+++.+.++++
T Consensus 207 A~~ta~l~~~l~~~l~~~~~~~ 228 (235)
T 3v9w_A 207 TERTAVLFCEIVNRWKRLGGWP 228 (235)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999998887665543
No 113
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.09 E-value=0.0012 Score=87.75 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=55.5
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHH
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
+..+++.|.+|+.. ++.+..++|.||+|+|||.+..- ++..+.. .+.++++++|+...+.++.+.+..
T Consensus 178 ~~~ln~~Q~~av~~--~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKT--VLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHH--HHTCSEEEEECCTTSCHHHHHHH-HHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH--HhcCCCeEEECCCCCCHHHHHHH-HHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 45799999999976 66778899999999999988644 4445554 678999999999999998877754
No 114
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0023 Score=87.16 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=56.3
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHH
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVL 593 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l 593 (2191)
+..|++.|.+|+.. ++.+..++|.||+|+|||.+..-.+ ..+.. .+.++++++|+...+.++.+++.+.
T Consensus 358 ~~~Ln~~Q~~Av~~--~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSH--VLQRPLSLIQGPPGTGKTVTSATIV-YHLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHH--HTTCSEEEEECSTTSSHHHHHHHHH-HHHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHH--HhcCCCEEEECCCCCCHHHHHHHHH-HHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 46799999999986 6778889999999999998765443 33433 6889999999999999999887653
No 115
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=96.92 E-value=0.00055 Score=64.21 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=53.7
Q ss_pred hcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 000107 1233 LTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVLEK 1303 (2191)
Q Consensus 1233 L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~~~~ 1303 (2191)
+|+..||+..-|..|.++||.|+++||-+++++|..+ .++....|.+|++.|++++.++
T Consensus 8 f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I------------~G~dE~~a~~l~~~A~~~l~~~ 66 (70)
T 1u9l_A 8 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEI------------EGLDEPTVEALRERAKNALATI 66 (70)
T ss_dssp HHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTS------------TTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhc------------cCCCHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999988 5678889999999999998654
No 116
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.77 E-value=0.0028 Score=86.30 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=55.3
Q ss_pred CCCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHH
Q 000107 522 ISKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 522 i~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
...+++.|.+|+.. ++.+...+|.||+|+|||.+.. .++..+.. .+.++++++|+...|.++.+.+..
T Consensus 354 ~~~Ln~~Q~~Av~~--~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKT--VLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHH--HHTSSEEEEECCTTSCHHHHHH-HHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHH--hccCCeEEEEcCCCCCHHHHHH-HHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 45799999999976 6778889999999999998764 34455554 678999999999999888877654
No 117
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.47 E-value=0.015 Score=77.51 Aligned_cols=78 Identities=21% Similarity=0.150 Sum_probs=59.8
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC---CEEEEEchhHHHHHHHHHHHHHHhhc--c
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG---KMALLVLPYVSICAEKAEHLEVLLEP--L 597 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g---~kaL~I~P~raLA~q~~~~l~~l~~~--l 597 (2191)
..|++-|.+++.. .+..++|.|+.|||||.+..--+...+...+ .++|++++++..+.++.+++..+++. .
T Consensus 8 ~~Ln~~Q~~av~~----~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~ 83 (647)
T 3lfu_A 8 DSLNDKQREAVAA----PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQG 83 (647)
T ss_dssp TTCCHHHHHHHTC----CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCT
T ss_pred hcCCHHHHHHHhC----CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccC
Confidence 5799999999963 3678999999999999987665555444322 58999999999999999999877543 2
Q ss_pred CCeEEEE
Q 000107 598 GRHVRSY 604 (2191)
Q Consensus 598 g~~V~~~ 604 (2191)
++.|..+
T Consensus 84 ~~~v~Tf 90 (647)
T 3lfu_A 84 GMWVGTF 90 (647)
T ss_dssp TCEEEEH
T ss_pred CcEEEcH
Confidence 3445444
No 118
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=96.32 E-value=0.00062 Score=70.01 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=50.1
Q ss_pred hhcCCC--CCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1232 ELTTIP--YVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1232 ~L~~ip--~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
++-+|+ ||++..+.+|.+|||.|+++||.+++.+|..+ .+++...|.+|++.|++++
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i------------~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINI------------KGISEAKADKILAEAAKLV 82 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTT------------TTCSTTHHHHHHHHHHHHS
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHc------------cCCCHHHHHHHHHHHHHHc
Confidence 344444 99999999999999999999999999999988 5677788999999999875
No 119
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.14 E-value=0.022 Score=70.96 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=77.2
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHH-hcCCEEEEEchhHHHHHHHHHHHHHHhhccCC---
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI-STGKMALLVLPYVSICAEKAEHLEVLLEPLGR--- 599 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll-~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~--- 599 (2191)
.|+|||...+.. +...+-+++..+-+.|||.++...++..+. ..+..+++++|++.-|.++++.+..++.....
T Consensus 163 ~L~p~Qk~il~~--l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 163 QLRDYQRDMLKI--MSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp CCCHHHHHHHHH--HHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCHHHHHHHHh--hccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhh
Confidence 789999999864 434577899999999999887766655444 35678999999999999999888877654321
Q ss_pred -eEEEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 600 -HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 600 -~V~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
.+... . ...-.+..+..|.+.+. .-.. ++ + ..+.++|+||+|.+.+
T Consensus 241 ~~~~~~-~-~~~I~f~nGs~i~~lsa-~~~s-lr---G----~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 241 PGIVEW-N-KGSIELDNGSSIGAYAS-SPDA-VR---G----NSFAMIYIEDCAFIPN 287 (385)
T ss_dssp CCEEEE-C-SSEEEETTSCEEEEEEC-SHHH-HH---T----SCCSEEEEESGGGSTT
T ss_pred hhhccC-C-ccEEEeCCCCEEEEEEC-CCCC-cc---C----CCCCEEEechhhhcCC
Confidence 11111 1 10011223444444432 1111 11 1 2358999999999764
No 120
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=96.06 E-value=0.0021 Score=84.54 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCC
Q 000107 1158 VALILSRLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIP 1237 (2191)
Q Consensus 1158 ~al~L~dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip 1237 (2191)
+...|.+||.+.....+.+..+|+.+....+.+ +-+ -|- + .++..++.+. ++.+..|++||
T Consensus 43 ~i~~l~~~i~~~~~~~~~~lp~iG~~~~~~i~~-----------~v~-~g~--~-~~~~~~~~~~----~~~~~~L~~v~ 103 (578)
T 2w9m_A 43 SLEELNEETPELLAREFTGIPKVGKGIAAELSD-----------FAR-SGT--F-APLEAAAGQL----PPGLLDLLGVR 103 (578)
T ss_dssp HHHSCC----------CCSSTTCCHHHHHHHHH-----------HHH-HSS--C-HHHHHHHHHS----CHHHHHHTTST
T ss_pred HHHhCchhhhhhhHhhhhhcCCCChhHHHHHHH-----------HHc-CCh--H-HHHHHHhhhh----HHHHHHHhCCC
Confidence 555677888888776666666777654332221 111 131 1 2334444443 77899999999
Q ss_pred CCCHHHHHHHHHcCCCCHHHHHcC-CHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHH
Q 000107 1238 YVKGSRARALYKAGLRTPLAIAEA-SISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGA 1296 (2191)
Q Consensus 1238 ~v~~~RAR~Ly~aG~~t~~~la~a-~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A 1296 (2191)
|||+.+|++||++||+|++||++| ....|.++ ++++.+.|.+|+...
T Consensus 104 GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~------------~GiG~Ktaq~I~~~l 151 (578)
T 2w9m_A 104 GLGPKKIRSLWLAGIDSLERLREAAESGELAGL------------KGFGAKSAATILENV 151 (578)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTS------------TTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHcCCCCHHHHHHHHhhCccccC------------CCCCHHHHHHHHHHH
Confidence 999999999999999999999875 22222222 567888888886654
No 121
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.03 E-value=0.036 Score=73.24 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=77.7
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhhccC--Ce
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLG--RH 600 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~~lg--~~ 600 (2191)
.|+|||...+.. +...+.+++..+-++|||.+....++..+.. .+..++++.|+...|.+.+..++.++..+. ++
T Consensus 163 ~l~p~Q~~i~~~--l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~ 240 (592)
T 3cpe_A 163 QLRDYQRDMLKI--MSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (592)
T ss_dssp CCCHHHHHHHHH--HHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred cCCHHHHHHHHh--hccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhc
Confidence 589999998865 4456789999999999998876555544444 455899999999999999988888776543 11
Q ss_pred EEEEeccCCCCCCCCCCceEEEc--hHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 601 VRSYYGNQGGGSLPKDTSVAVCT--IEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 601 V~~~~G~~~~~~l~~~~~IiV~T--pEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
..........-.+..+..|.+.+ |+.+ +. . ...++|+||+|.+.+
T Consensus 241 ~~~~~~~~~~i~~~nGs~i~~~s~~~~~l----rG---~----~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 241 PGIVEWNKGSIELDNGSSIGAYASSPDAV----RG---N----SFAMIYIEDCAFIPN 287 (592)
T ss_dssp CCEEEECSSEEEETTSCEEEEEECCHHHH----HH---S----CCSEEEEETGGGCTT
T ss_pred cccccCCccEEEecCCCEEEEEeCCCCCc----cC---C----CcceEEEehhccCCc
Confidence 00000001001122344444433 3322 21 1 367999999999754
No 122
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.49 E-value=0.061 Score=71.41 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=45.1
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEecc--cccccCCCCCc---eEEe-ecCCCCCc-----------------c---c-
Q 000107 850 HAGLTVEEREVVETCYRKGLVRVLTATS--TLAAGVNLPAR---RVIF-RQPRIGRD-----------------F---I- 902 (2191)
Q Consensus 850 HagLs~~eR~~Ve~~Fr~G~ikVLVATs--tLa~GVNLPav---~VVI-~~p~~g~~-----------------~---i- 902 (2191)
..|++..+|..+++.|+ +.-.||++|. .+..|||+|+. .||| ..|++..+ | +
T Consensus 476 ~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~ 554 (620)
T 4a15_A 476 YRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVV 554 (620)
T ss_dssp CTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTH
T ss_pred cCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhH
Confidence 34566678999999999 8889999974 89999999983 3444 34443221 1 0
Q ss_pred --CcccccccccccCCCCCCCceEEEEE
Q 000107 903 --DGTRYRQMAGRAGRTGIDTKGESMLI 928 (2191)
Q Consensus 903 --s~~~y~QmiGRAGR~G~d~~Ge~ill 928 (2191)
-.....|-+||+-|.-. ..|..+++
T Consensus 555 ~pa~~~l~Qa~GRlIR~~~-D~G~v~ll 581 (620)
T 4a15_A 555 YPTAIKIRQEIGRLIRSAE-DTGACVIL 581 (620)
T ss_dssp HHHHHHHHHHHHTTCCSTT-CCEEEEEE
T ss_pred HHHHHHHHHHhCccccCCC-ceEEEEEE
Confidence 01234799999999863 47865555
No 123
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=95.24 E-value=0.0032 Score=73.16 Aligned_cols=61 Identities=26% Similarity=0.306 Sum_probs=0.0
Q ss_pred chhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHH
Q 000107 1227 RAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKI 1299 (2191)
Q Consensus 1227 ~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l 1299 (2191)
..+...|..|||||..+|++|+++||.|+++|+.+++++|..+ .+++.+.|.+|+.....+
T Consensus 11 ~a~~~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v------------~GIG~ktAe~I~~~l~~~ 71 (241)
T 1vq8_Y 11 EEEYTELTDISGVGPSKAESLREAGFESVEDVRGADQSALADV------------SGIGNALAARIKADVGGL 71 (241)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccchhHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhc------------cCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999887 567788888887766544
No 124
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.18 E-value=0.025 Score=75.59 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=54.3
Q ss_pred CCCCHHHHHhhhhccccc-CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHH
Q 000107 523 SKLYPWQVECLHVDGVLQ-RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEV 592 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~-gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~ 592 (2191)
..|++-|.+|+.. ++. ..-.||.||+|+|||.+..- ++..+...+.++|+++|+...+.++.+++..
T Consensus 188 ~~LN~~Q~~AV~~--al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLF--ALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHH--HHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH--HhcCCCceEEECCCCCCHHHHHHH-HHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 3689999999976 554 45789999999999988654 4445666789999999999999999887754
No 125
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.95 E-value=0.2 Score=63.87 Aligned_cols=134 Identities=13% Similarity=0.161 Sum_probs=73.5
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCCCCC-
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGGGSL- 613 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~~~l- 613 (2191)
.++..|.-+++.|++|+|||..+...+.......|.+++|+..--. ..+...++..... ++....+ .|......+
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~--~i~~~~l~~g~l~~~~~~ 271 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEA--RIDMNRVRLGQLTDRDFS 271 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHT--TCCTTTCCGGGCCHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHc--CCCHHHHhCCCCCHHHHH
Confidence 3577889999999999999988766555544445777888753211 2233333322111 1111000 111100000
Q ss_pred --------CCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEccccccccc-------chhHHHHHHHHHHHHh
Q 000107 614 --------PKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-------NRGYLLELLLTKLRYA 673 (2191)
Q Consensus 614 --------~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-------~RG~~lE~lL~kLr~~ 673 (2191)
-....+.+. |++.+...++++... ..+++||||.++.+... .|...+..++..|+.+
T Consensus 272 ~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~---~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~l 348 (444)
T 2q6t_A 272 RLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQ---NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKAL 348 (444)
T ss_dssp HHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHH---SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 001234442 455555555554433 25899999999998743 2344566777777776
Q ss_pred hc
Q 000107 674 AG 675 (2191)
Q Consensus 674 ~~ 675 (2191)
+.
T Consensus 349 Ak 350 (444)
T 2q6t_A 349 AR 350 (444)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 126
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.74 E-value=0.18 Score=55.58 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=26.1
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHH-hcCCEEEEE
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLI-STGKMALLV 576 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll-~~g~kaL~I 576 (2191)
..|+.+++.||+|+|||+.+-. +...+. ..|..++++
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~-i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVA-TLKAIYEKKGIRGYFF 73 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHH-HHHHHHHHSCCCCCEE
T ss_pred cCCCEEEEECCCCCCHHHHHHH-HHHHHHHHcCCeEEEE
Confidence 3589999999999999988754 333333 455555554
No 127
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=94.45 E-value=0.032 Score=68.30 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=35.5
Q ss_pred chhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHH
Q 000107 1227 RAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVK 1268 (2191)
Q Consensus 1227 ~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~ 1268 (2191)
...|.+|++|||||..+|++||+.||+|++||..+ ...|..
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a-~~~l~~ 134 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKN-EDKLNH 134 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHTC-GGGSCH
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHHh-hhhhHH
Confidence 46789999999999999999999999999999987 444433
No 128
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.38 E-value=0.069 Score=68.26 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=71.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-eccCCCCCC--
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGNQGGGSL-- 613 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~~~~~~l-- 613 (2191)
++..|.-+++.|++|+|||..+...+.......|.+++|+..-.. ..+...++.... .|+....+ .|......+
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~~~~~--~~~~~~~l~~g~l~~~~~~~ 275 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRMLCAE--GNINAQNLRTGKLTPEDWGK 275 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHHHHHH--HTCCHHHHHTSCCCHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHHHHH--cCCCHHHHhcCCCCHHHHHH
Confidence 577899999999999999988766555444445667888763211 123332221100 11110000 010000000
Q ss_pred -------CCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEccccccccc-----chhHHHHHHHHHHHHhhc
Q 000107 614 -------PKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ-----NRGYLLELLLTKLRYAAG 675 (2191)
Q Consensus 614 -------~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~-----~RG~~lE~lL~kLr~~~~ 675 (2191)
-....+.+. |.+.+...++++... .++++||||+++.+... ++...+..++..|+.++.
T Consensus 276 ~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~---~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAk 351 (454)
T 2r6a_A 276 LTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQE---SGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAR 351 (454)
T ss_dssp HHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTT---TCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 001234442 445555555554332 35899999999998743 244556677777776653
No 129
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=94.20 E-value=0.017 Score=55.37 Aligned_cols=52 Identities=31% Similarity=0.307 Sum_probs=43.6
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
..|..|||||..+|++|++. |.++++|..+++++|..+ ++++...|.+|++.
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i------------~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKV------------PGISQGLAEKIFWS 75 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTS------------SSTTSHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHC------------CCCCHHHHHHHHHH
Confidence 45779999999999999998 889999999999998776 45666777777653
No 130
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=94.10 E-value=0.049 Score=50.12 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=34.8
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
.|-.|||||..|+++|.+ -|.|+++|++|+.++|..++
T Consensus 5 ~L~~IpGIG~kr~~~LL~-~Fgs~~~i~~As~eeL~~vi 42 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSIL 42 (63)
T ss_dssp HHHTSTTCCHHHHHHHHH-HCSSHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHHc
Confidence 467899999999999996 58999999999999999985
No 131
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.93 E-value=0.11 Score=65.65 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=56.8
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
..+-.++.|+.|+|||....-. .. ..+.++++|+++++.++.+.+... |. ......
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~-----~~-~~~~lVlTpT~~aa~~l~~kl~~~----~~--------------~~~~~~ 215 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSR-----VN-FEEDLILVPGRQAAEMIRRRANAS----GI--------------IVATKD 215 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHH-----CC-TTTCEEEESCHHHHHHHHHHHTTT----SC--------------CCCCTT
T ss_pred cccEEEEEcCCCCCHHHHHHHH-----hc-cCCeEEEeCCHHHHHHHHHHhhhc----Cc--------------cccccc
Confidence 4567889999999999875321 11 256799999999998877655321 10 011234
Q ss_pred EEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
-|.|.+++. ++. .....-..++|||||+-|+.
T Consensus 216 ~V~T~dsfL--~~~--~~~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 216 NVRTVDSFL--MNY--GKGARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp TEEEHHHHH--HTT--TSSCCCCCSEEEEETGGGSC
T ss_pred eEEEeHHhh--cCC--CCCCCCcCCEEEEeCcccCC
Confidence 588988753 221 11112247999999999874
No 132
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=93.73 E-value=0.067 Score=52.57 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=43.4
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
..|..|||||..+|+.|.+. |.|+.+|..+++++|..+ ++++...|.+|++
T Consensus 19 ~~L~~IpgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~i------------~GIG~~~a~~I~~ 69 (89)
T 1z00_A 19 ECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALC------------PGLGPQKARRLFD 69 (89)
T ss_dssp HHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTS------------TTCCHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhC------------CCCCHHHHHHHHH
Confidence 45779999999999999986 889999999999998776 4677777777765
No 133
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=93.54 E-value=0.044 Score=67.63 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=35.3
Q ss_pred cCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHH
Q 000107 1225 GVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIV 1267 (2191)
Q Consensus 1225 Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~ 1267 (2191)
-+.+-|.+|++|||||..+|++||+.||+|++||. +....|.
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~Gi~tledL~-~~~~~L~ 137 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELR-EQPQRLT 137 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-TCCTTCC
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHH-hcccchH
Confidence 35577889999999999999999999999999998 4443443
No 134
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.52 E-value=0.26 Score=60.28 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=80.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCC---
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSL--- 613 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l--- 613 (2191)
++..|.-+++.|++|+|||..+...+... ...+.+++|+..-- -..|+..++......++..- ...|......+
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~-a~~g~~Vl~fSlEm-s~~ql~~Rlls~~~~v~~~~-l~~g~Ls~~e~~~l 118 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSA-LNDDRGVAVFSLEM-SAEQLALRALSDLTSINMHD-LESGRLDDDQWENL 118 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHH-HHTTCEEEEEESSS-CHHHHHHHHHHHHHCCCHHH-HHHTCCCHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCCC-CHHHHHHHHHHHhhCCCHHH-HhcCCCCHHHHHHH
Confidence 57889999999999999998876555443 33678888875321 12333333322111111000 00010000000
Q ss_pred ------CCCCceEEE-----chHHHHHHHHHhhhcCCCCccceEEEcccccccccc----hhHHHHHHHHHHHHhhcCCC
Q 000107 614 ------PKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQN----RGYLLELLLTKLRYAAGEGT 678 (2191)
Q Consensus 614 ------~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~~----RG~~lE~lL~kLr~~~~~~~ 678 (2191)
-.+..|.|. |+..+...++++.... ..+++||||-++.|.... |...+..+...|+.++.+
T Consensus 119 ~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~--gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAke-- 194 (338)
T 4a1f_A 119 AKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQH--KELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARE-- 194 (338)
T ss_dssp HHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHC--TTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhc--CCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHH--
Confidence 001223332 3455555555543321 168999999999986532 333466777778777643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 679 SDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 679 ~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
.++.+|++|-.
T Consensus 195 -------------------l~vpVi~lsQl 205 (338)
T 4a1f_A 195 -------------------LEIPIIALVQL 205 (338)
T ss_dssp -------------------HTSCEEEEEEC
T ss_pred -------------------cCCeEEEEEec
Confidence 56788888766
No 135
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.34 E-value=0.099 Score=70.17 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=66.2
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHh---cCCEEEEEchhHHHHHHHHHHHHHHhhccCCe
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS---TGKMALLVLPYVSICAEKAEHLEVLLEPLGRH 600 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~---~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~ 600 (2191)
.|++-|.+++.. .+.+++|.|+.|||||.+..--+...+.. ...++|+|+.|+..|.++.+++...+...
T Consensus 2 ~L~~~Q~~av~~----~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~--- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEF----VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK--- 74 (673)
T ss_dssp CCCHHHHHHHHC----CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT---
T ss_pred CCCHHHHHHHhC----CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcc---
Confidence 589999999864 36799999999999999876666555544 23589999999999999999887764321
Q ss_pred EEEEeccCCCCCCCCCCceEEEchHHHH-HHHHH
Q 000107 601 VRSYYGNQGGGSLPKDTSVAVCTIEKAN-SLVNR 633 (2191)
Q Consensus 601 V~~~~G~~~~~~l~~~~~IiV~TpEkl~-~Ll~~ 633 (2191)
....+-|+|...+. .+++.
T Consensus 75 --------------~~~~~~v~Tfhs~~~~il~~ 94 (673)
T 1uaa_A 75 --------------EARGLMISTFHTLGLDIIKR 94 (673)
T ss_dssp --------------TTTTSEEEEHHHHHHHHHHH
T ss_pred --------------cccCCEEEeHHHHHHHHHHH
Confidence 01257899988753 34443
No 136
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=93.33 E-value=0.054 Score=53.49 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=43.7
Q ss_pred hhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1230 IVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1230 Ll~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
+..|..|||||..+|+.|++. |.++.+|..+++++|..+ ++++...|.+|++.
T Consensus 31 ~~~L~~IpgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~i------------~GIG~~~a~~I~~~ 83 (91)
T 2a1j_B 31 TECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALC------------PGLGPQKARRLFDV 83 (91)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTS------------SSCCSHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhC------------CCCCHHHHHHHHHH
Confidence 346779999999999999986 789999999999998776 45666777777663
No 137
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=93.17 E-value=0.071 Score=50.32 Aligned_cols=51 Identities=25% Similarity=0.372 Sum_probs=43.6
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
+.|..|||||..+|+.|++. |.|+.+|..+++++|..+ ++++...|.+|..
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~i------------~Gig~~~a~~i~~ 64 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKV------------EGIGEKIAKEIRR 64 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTS------------TTCCHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhcC------------CCCCHHHHHHHHH
Confidence 56789999999999999995 899999999999988766 5677777887765
No 138
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.17 E-value=0.29 Score=56.37 Aligned_cols=42 Identities=14% Similarity=0.334 Sum_probs=31.8
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
.++..|..+++.||+|+|||+.+...+.. +...+.+++|+.-
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~-~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWN-GLKMGEPGIYVAL 59 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHH-HHHTTCCEEEEES
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH-HHhcCCeEEEEEc
Confidence 35678999999999999999987654444 3345778888763
No 139
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=93.16 E-value=0.077 Score=51.62 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=34.7
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
.|-.|||||..|+++|.+ -|.|+..|++|+.++|..++
T Consensus 19 ~L~~IpGIG~kr~~~LL~-~FgSl~~i~~AS~eEL~~vi 56 (84)
T 1z00_B 19 FLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSIL 56 (84)
T ss_dssp HHHTCSSCCHHHHHHHHH-HSSCHHHHHHSCHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHHh
Confidence 356899999999999996 58999999999999999995
No 140
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=93.09 E-value=0.055 Score=67.19 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=32.3
Q ss_pred CchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHc
Q 000107 1226 VRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAE 1260 (2191)
Q Consensus 1226 v~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~ 1260 (2191)
+..-|.+|++|||||..+|++||+.||+|++||..
T Consensus 116 ~~~~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 116 RYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred chhHHHHHHccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 45678999999999999999999999999999984
No 141
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.05 E-value=0.25 Score=56.98 Aligned_cols=92 Identities=17% Similarity=0.110 Sum_probs=53.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
.|.-+++.||+|+|||+.+...+ .++...|.+++++.|...- . . ...+...+|+. -..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~-~r~~~~g~kVli~~~~~d~--r-~--~~~i~srlG~~---------------~~~~ 69 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRL-HRLEYADVKYLVFKPKIDT--R-S--IRNIQSRTGTS---------------LPSV 69 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH-HHHHHTTCCEEEEEECCCG--G-G--CSSCCCCCCCS---------------SCCE
T ss_pred CcEEEEEECCCCCcHHHHHHHHH-HHHHhcCCEEEEEEeccCc--h-H--HHHHHHhcCCC---------------cccc
Confidence 46789999999999998875544 4455578889998875320 0 0 00111111110 0123
Q ss_pred EEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 620 AVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 620 iV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.+.+.+.+...+.. ...-..+++|||||++.+.
T Consensus 70 ~~~~~~~i~~~i~~---~~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 70 EVESAPEILNYIMS---NSFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp EESSTHHHHHHHHS---TTSCTTCCEEEECSGGGSC
T ss_pred ccCCHHHHHHHHHH---HhhCCCCCEEEEecCccCc
Confidence 34555554444432 2222457999999999864
No 142
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.04 E-value=0.15 Score=68.96 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=73.5
Q ss_pred CCCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcC---CEEEEEchhHHHHHHHHHHHHHHhhccCC
Q 000107 523 SKLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTG---KMALLVLPYVSICAEKAEHLEVLLEPLGR 599 (2191)
Q Consensus 523 ~~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g---~kaL~I~P~raLA~q~~~~l~~l~~~lg~ 599 (2191)
..|++-|.+++.. .+.+++|.|+.|||||.+..--+...+...+ .++|+|+.|+..|.++.+++..+++.-
T Consensus 10 ~~Ln~~Q~~av~~----~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~-- 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT----TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA-- 83 (724)
T ss_dssp TTSCHHHHHHHHC----CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG--
T ss_pred hhCCHHHHHHHhC----CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc--
Confidence 5799999999864 3578999999999999987666665554333 589999999999999999988765321
Q ss_pred eEEEEeccCCCCCCCCCCceEEEchHHH-HHHHHHhhhcCCCCccceEEEcccc
Q 000107 600 HVRSYYGNQGGGSLPKDTSVAVCTIEKA-NSLVNRMLEEGRLSEIGIIVIDELH 652 (2191)
Q Consensus 600 ~V~~~~G~~~~~~l~~~~~IiV~TpEkl-~~Ll~~l~~~~~L~~l~lVVIDEaH 652 (2191)
...+-|+|...+ ..++++......+ .-++-|+|+.+
T Consensus 84 ----------------~~~~~v~Tfhs~~~~ilr~~~~~~g~-~~~f~i~d~~d 120 (724)
T 1pjr_A 84 ----------------AEDVWISTFHSMCVRILRRDIDRIGI-NRNFSILDPTD 120 (724)
T ss_dssp ----------------GTTSEEEEHHHHHHHHHHHHGGGGTC-CTTCEECCHHH
T ss_pred ----------------ccCcEEeeHHHHHHHHHHHHHHHhCC-CCCCEECCHHH
Confidence 124689998775 3445442221111 11355666543
No 143
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.86 E-value=0.35 Score=54.60 Aligned_cols=37 Identities=22% Similarity=0.092 Sum_probs=29.8
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
++..|.-+++.||+|+|||+.+...+. ..+.+++|+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i~ 52 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL----LSGKKVAYVD 52 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH----HHCSEEEEEE
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH----HcCCcEEEEE
Confidence 467789999999999999988776554 3577888875
No 144
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.79 E-value=0.53 Score=57.46 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=28.9
Q ss_pred CCHHHHHhhhh--cccccC---CeEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 525 LYPWQVECLHV--DGVLQR---RNLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 525 l~p~Q~eal~~--~~il~g---knlIi~APTGSGKTlvael~iL~~ll 567 (2191)
++|||.+++.. ..+..| ..+++.||.|+|||..+.. +.+.+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 58999888753 112233 3599999999999988754 344444
No 145
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.66 E-value=0.17 Score=58.27 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=33.9
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.++..|..++++|++|+|||..+...+.+.+...+.+++|+.
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 356778999999999999998887766666666677888876
No 146
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.63 E-value=0.18 Score=54.34 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.++.+++.+|+|+|||..+-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 788999999999999987644
No 147
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.52 E-value=0.1 Score=58.68 Aligned_cols=39 Identities=18% Similarity=0.024 Sum_probs=31.2
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchh
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~ 579 (2191)
.|+-.++.||.|+|||+.++-. +.+....|.+++++.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~-a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRR-IRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH-HHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHH-HHHHHHCCCEEEEEEec
Confidence 4678899999999999887544 44555678899999887
No 148
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.39 E-value=0.27 Score=62.60 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=81.7
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEE-ecc--CCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSY-YGN--QGGGSL 613 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~-~G~--~~~~~l 613 (2191)
++..|.-+++.|++|+|||..+...+..... .|.+++|+.--- -..|...++..... |+....+ .|. .....+
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~-~g~~vl~fSlEm-s~~ql~~R~~~~~~--~i~~~~l~~g~~~l~~~~~ 268 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEM-GKKENIKRLIVTAG--SINAQKIKAARRDFASEDW 268 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHH-TTCEEEEECSSS-CTTHHHHHHHHHHS--CCCHHHHHHTGGGTCCSCH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHH-cCCEEEEEECCC-CHHHHHHHHHHHHc--CCCHHHHhcccCCCCHHHH
Confidence 5778999999999999999988766655444 477888886321 11223333222111 1110000 011 000000
Q ss_pred C---------CCCceEE-----EchHHHHHHHHHhhhcCCCCccc--eEEEccccccccc----chhHHHHHHHHHHHHh
Q 000107 614 P---------KDTSVAV-----CTIEKANSLVNRMLEEGRLSEIG--IIVIDELHMVADQ----NRGYLLELLLTKLRYA 673 (2191)
Q Consensus 614 ~---------~~~~IiV-----~TpEkl~~Ll~~l~~~~~L~~l~--lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~ 673 (2191)
. ....|.| .|++.+...++++.... .++ +||||=++.+... .|...+..+...|+.+
T Consensus 269 ~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~---~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~l 345 (444)
T 3bgw_A 269 GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKN---PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKM 345 (444)
T ss_dssp HHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHS---CSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHh---CCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 0 0123443 25566665566554432 578 9999999988632 3445566777777766
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecc
Q 000107 674 AGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSAT 708 (2191)
Q Consensus 674 ~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSAT 708 (2191)
+.+ .++.+|++|-.
T Consensus 346 Ake---------------------~~v~vi~lsql 359 (444)
T 3bgw_A 346 ARE---------------------LDVVVIALSQL 359 (444)
T ss_dssp HHH---------------------HTCEEEEEEEC
T ss_pred HHH---------------------hCCeEEEEecC
Confidence 543 46778887764
No 149
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.93 E-value=0.63 Score=56.41 Aligned_cols=134 Identities=14% Similarity=0.082 Sum_probs=72.6
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEecc--CCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGN--QGGGSL 613 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~--~~~~~l 613 (2191)
.++..|.-++++|++|+|||..+...+... ...+.+++|+.-- .-..++..++......+...- ...|. ......
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g~~vl~~slE-~s~~~l~~R~~~~~~~i~~~~-l~~~~~~l~~~~~ 139 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM-SDNDDVVNLHSLE-MGKKENIKRLIVTAGSINAQK-IKAARRDFASEDW 139 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHH-HTTTCEEEEEESS-SCHHHHHHHHHHHHTTCCHHH-HHSCHHHHCSSCH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHH-HhcCCCCCCHHHH
Confidence 467789999999999999998876655543 3456788888632 222333333332221111000 00010 000000
Q ss_pred ---------CCCCceEEE-----chHHHHHHHHHhhhcCCCCccc--eEEEccccccccc----chhHHHHHHHHHHHHh
Q 000107 614 ---------PKDTSVAVC-----TIEKANSLVNRMLEEGRLSEIG--IIVIDELHMVADQ----NRGYLLELLLTKLRYA 673 (2191)
Q Consensus 614 ---------~~~~~IiV~-----TpEkl~~Ll~~l~~~~~L~~l~--lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~ 673 (2191)
-....|.+. |++.+...++++... ..++ +||||-++.+... .+...+..++..|+.+
T Consensus 140 ~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~---~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~l 216 (315)
T 3bh0_A 140 GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKM 216 (315)
T ss_dssp HHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHT---SSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 001234332 455555555554332 2478 9999999988632 2445566777777766
Q ss_pred hc
Q 000107 674 AG 675 (2191)
Q Consensus 674 ~~ 675 (2191)
+.
T Consensus 217 Ak 218 (315)
T 3bh0_A 217 AR 218 (315)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 150
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.66 E-value=0.75 Score=55.62 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=27.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
.+.++++.||+|+|||..+-. +.+.+...+..++++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~-i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQA-AGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHH-HHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHH-HHHHHHHCCCEEEEEEH
Confidence 357899999999999988754 44445445667777654
No 151
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.64 E-value=0.59 Score=56.70 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll 567 (2191)
.+.+++++||+|+|||+++-. +++.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 568999999999999988754 445553
No 152
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.49 E-value=0.34 Score=52.77 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
..++++.||+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 57899999999999988754
No 153
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.42 E-value=0.29 Score=59.56 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=31.8
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-----CCEEEEEchh
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-----GKMALLVLPY 579 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~-----g~kaL~I~P~ 579 (2191)
++..|..+++.||+|+|||..+...+....... +.+++|+.--
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 566789999999999999988876655432221 6688888643
No 154
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=91.22 E-value=0.22 Score=71.25 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=57.2
Q ss_pred CCCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-----CCEEEEEchhHHHHHHHHHHHHHHhh
Q 000107 524 KLYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-----GKMALLVLPYVSICAEKAEHLEVLLE 595 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-----g~kaL~I~P~raLA~q~~~~l~~l~~ 595 (2191)
++++-|.++|.. .+++++|.|..|||||.+..--+++.+... ..+++++++|++.|.++.+++...+.
T Consensus 10 ~~t~eQ~~~i~~----~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 10 TWTDDQWNAIVS----TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp CCCHHHHHHHHC----CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC----CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 789999999965 388999999999999999877777666542 24899999999999999999877554
No 155
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.88 E-value=0.79 Score=52.14 Aligned_cols=36 Identities=6% Similarity=0.145 Sum_probs=24.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
.+.++++.||+|+|||..+.. +.+.+...+..++++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~-l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHA-ACARANELERRSFYI 86 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHH-HHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHHcCCeEEEE
Confidence 478999999999999988753 334443344455544
No 156
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=90.88 E-value=0.43 Score=54.42 Aligned_cols=65 Identities=20% Similarity=0.259 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCH
Q 000107 1184 MVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASI 1263 (2191)
Q Consensus 1184 ~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~ 1263 (2191)
.||.+++.|.+||=.. +. ++|-..- --.+|-.|||||..||+.|.+. |.|++.|.+|+.
T Consensus 141 llq~iRDEaHRFAIt~---------hr--------~~R~k~~---~~s~LdgIpGIG~k~ak~Ll~~-FgSl~~i~~As~ 199 (220)
T 2nrt_A 141 LLVQIRDETHRFAVSY---------HR--------KRREKES---LRSVLDNVPGIGPIRKKKLIEH-FGSLENIRSASL 199 (220)
T ss_dssp HHHHHHHHHHHHHHGG---------GH--------HHHHHHH---HHHHHTTSTTCCHHHHHHHHHH-HCSHHHHHTSCH
T ss_pred hhhhhcchhhhccccc---------cc--------ccccccc---ccccccCCCCcCHHHHHHHHHH-cCCHHHHHhCCH
Confidence 3799999999986432 11 0011110 1245679999999999999996 889999999999
Q ss_pred HHHHHH
Q 000107 1264 SEIVKA 1269 (2191)
Q Consensus 1264 ~~l~~~ 1269 (2191)
++|.++
T Consensus 200 EeL~~V 205 (220)
T 2nrt_A 200 EEIARV 205 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999887
No 157
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.81 E-value=0.67 Score=54.75 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=19.4
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+...+++++.||+|+|||.++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHH
Confidence 45678999999999999988753
No 158
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.73 E-value=0.63 Score=57.61 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=57.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
++..|..++|.+|+|+|||..+...+.. +...+.+++|+..-..+.... .. .+|+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~-~~~~g~~vlyi~~E~s~~~~~---a~----~~g~d~--------------- 126 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ-AQKAGGTCAFIDAEHALDPVY---AR----ALGVNT--------------- 126 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCCCCHHH---HH----HTTCCG---------------
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH-HHHCCCeEEEEECCCChhHHH---HH----HcCCCH---------------
Confidence 5677899999999999999887655544 444577888886543222111 11 122210
Q ss_pred CceEEE---chHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 617 TSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 617 ~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.+++|. |.+.+...++.+... ..+++||||.+..+.
T Consensus 127 ~~l~i~~~~~~e~~l~~l~~l~~~---~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 127 DELLVSQPDNGEQALEIMELLVRS---GAIDVVVVDSVAALT 165 (366)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHTT---TCCSEEEEECTTTCC
T ss_pred HHceeecCCcHHHHHHHHHHHHhc---CCCCEEEEeChHHhc
Confidence 012222 456666666654432 357999999999886
No 159
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.72 E-value=1.2 Score=56.41 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCc
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTS 618 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~ 618 (2191)
+..+++++|+|+|||+.+...+. .+...|++++++. +++.-+.+... .+....|+.+.. ... .
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~-~l~~~G~kVllv~~D~~r~~a~eqL~---~~~~~~gv~~~~--~~~-------~-- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAY-FYKKRGYKVGLVAADVYRPAAYDQLL---QLGNQIGVQVYG--EPN-------N-- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHH-HHHHTTCCEEEEEECCSCHHHHHHHH---HHHHTTTCCEEC--CTT-------C--
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHHcCCeEEEEecCccchhHHHHHH---HHHHhcCCceee--ccc-------c--
Confidence 57899999999999988764443 3445677877765 56655544443 333444544321 110 0
Q ss_pred eEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 619 VAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 619 IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
..|.. +....+......+.++||||++-.+.
T Consensus 162 ---~dp~~---i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 162 ---QNPIE---IAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp ---SCHHH---HHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred ---CCHHH---HHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 01322 22222233334578999999997654
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.71 E-value=0.39 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRL 566 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~l 566 (2191)
..+++++||+|+|||..+.. +.+.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~-~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEG-LAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHH-HHHHH
T ss_pred CCceEEECCCCCCHHHHHHH-HHHHH
Confidence 57899999999999988743 33443
No 161
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.70 E-value=0.63 Score=54.77 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=17.8
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
...++++.||+|+|||.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 347899999999999988753
No 162
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.65 E-value=0.59 Score=53.94 Aligned_cols=40 Identities=15% Similarity=-0.028 Sum_probs=31.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYV 580 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~r 580 (2191)
.|+-.+++||-|+|||+.++-.+.+ ....|.+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r-~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRR-FQIAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH-HHTTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHH-HHHCCCeEEEEeecC
Confidence 4778899999999999887655544 455788999998874
No 163
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=90.47 E-value=0.25 Score=60.37 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=29.9
Q ss_pred hhhhc-CCCCCCHHHHHHHHHcCCCCHHHHHcCC
Q 000107 1230 IVELT-TIPYVKGSRARALYKAGLRTPLAIAEAS 1262 (2191)
Q Consensus 1230 Ll~L~-~ip~v~~~RAR~Ly~aG~~t~~~la~a~ 1262 (2191)
++.|+ +|||||..+|++||+.||+|++||..+.
T Consensus 94 ~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~ 127 (335)
T 2bcq_A 94 VLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQA 127 (335)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHC
T ss_pred HHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHh
Confidence 67776 9999999999999999999999998753
No 164
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.31 E-value=1.6 Score=52.10 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
+.++++.||+|+|||.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999988753
No 165
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.23 E-value=0.58 Score=53.70 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=31.0
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-----CCEEEEEch
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLIST-----GKMALLVLP 578 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~-----g~kaL~I~P 578 (2191)
.++..|..+++.+|+|+|||+.+...+...+... +..++|+.-
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 3567889999999999999998866554323321 567788753
No 166
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.18 E-value=1 Score=53.66 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=29.7
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
++..|.-+++.||+|+|||+.+...+.......|.+++|+.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46789999999999999998876544433333365777764
No 167
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.07 E-value=1 Score=58.17 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=70.6
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEE----EeccCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRS----YYGNQGGGS 612 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~----~~G~~~~~~ 612 (2191)
++..|.-++|.|++|+|||..+...+.......|.+++|+.---. ..|...++..... ++.... ..|......
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~~~--~~~~~~~~~~~~g~l~~~~ 314 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHN--RVRLRQSDSLKREIIENGK 314 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHHHT--TSCCTTCHHHHHHHHHTSH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHHHc--CCChhhccccccCCCCHHH
Confidence 577899999999999999998876655443333778888763211 2233333322111 111100 000000000
Q ss_pred -------CCCCCceEEE------chHHHHHHHHHhhhcCCCCccceEEEccccccccc----chhHHHHHHHHHHHHhhc
Q 000107 613 -------LPKDTSVAVC------TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVADQ----NRGYLLELLLTKLRYAAG 675 (2191)
Q Consensus 613 -------l~~~~~IiV~------TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d~----~RG~~lE~lL~kLr~~~~ 675 (2191)
+.....+.|. |++.+...++++... ..+++||||=+..+... .+...+..++..|+.++.
T Consensus 315 ~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~---~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak 391 (503)
T 1q57_A 315 FDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSG---LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAK 391 (503)
T ss_dssp HHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHT---TCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHh---cCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0001123332 344444445544332 25899999999987532 344556667777776654
No 168
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.04 E-value=0.29 Score=55.86 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=30.8
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYV 580 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~r 580 (2191)
.|+-.++++|-|+|||+.++-.+. +....|.+++++.|..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~-r~~~~g~kVli~k~~~ 66 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVR-RTQFAKQHAIVFKPCI 66 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHH-HHHHTTCCEEEEECC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH-HHHHCCCEEEEEEecc
Confidence 467778999999999988755544 4455788999999874
No 169
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.93 E-value=0.26 Score=59.78 Aligned_cols=56 Identities=32% Similarity=0.383 Sum_probs=46.5
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKI 1299 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l 1299 (2191)
+|..||||+..-|.+|-++||+|+++|+.+++.+|+.+. ++....|.+++..|++.
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~------------gis~~~a~~~i~~a~~~ 59 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIE------------GISEKAAAKMIMGARDL 59 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTST------------TCCHHHHHHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhh------------CcCHHHHHHHHHHHHHh
Confidence 577889999999999999999999999999999998873 35556677777776654
No 170
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.58 E-value=3.5 Score=46.46 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=29.0
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
++..|..+++.||+|+|||+.+...+.. +...+.+++|+.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~-~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAK-GLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHH-HHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHH-HHHCCCeEEEEE
Confidence 4667899999999999999876554433 333466677765
No 171
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.50 E-value=0.67 Score=53.34 Aligned_cols=41 Identities=17% Similarity=0.286 Sum_probs=28.9
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
++..|..+.+.||+|||||+.+-..+...+...+..++++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 57789999999999999998876554333323455555554
No 172
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.41 E-value=0.86 Score=55.90 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=24.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhc------CCEEEEEc
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLIST------GKMALLVL 577 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~------g~kaL~I~ 577 (2191)
.+.+++++||+|+|||..+... .+.+... +..++++-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~-~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLV-LRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHH-HHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 4679999999999999887543 3333322 44555554
No 173
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.29 E-value=0.86 Score=56.15 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=56.3
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
.++-.|..++|.+|+|+|||+.+...+. .+...+++++|+..-..+-...+ +++ |+..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~-~~~~~gg~VlyId~E~s~~~~ra---~rl----gv~~-------------- 113 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIA-EAQKMGGVAAFIDAEHALDPVYA---KNL----GVDL-------------- 113 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH-HHHHTTCCEEEEESSCCCCHHHH---HHH----TCCG--------------
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHH-HHHhcCCeEEEEecccccchHHH---HHc----CCch--------------
Confidence 3577789999999999999988755443 44456778999876544333222 222 2210
Q ss_pred CCceEEE---chHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 616 DTSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 616 ~~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
-++.+. |.+.+..+++.+... ..+++||||.+-.+.
T Consensus 114 -~~l~i~~~~~~e~~l~~~~~l~~~---~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 114 -KSLLISQPDHGEQALEIVDELVRS---GVVDLIVVDSVAALV 152 (356)
T ss_dssp -GGCEEECCSSHHHHHHHHHHHHHT---SCCSEEEEECTTTCC
T ss_pred -hhhhhhhccCHHHHHHHHHHHhhh---cCCCeEEehHhhhhc
Confidence 012222 334444444443332 357899999987654
No 174
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=89.18 E-value=1.4 Score=49.05 Aligned_cols=96 Identities=13% Similarity=0.020 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHhc----CcccccccCccccccccccccccccccccccCCCCccchHHHH
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHA----AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIV 1658 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~----gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lA 1658 (2191)
.+.+..+..++.+ ...++||+.||+.+|++. |+.... ..++||+..
T Consensus 80 ~~v~~~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~----------------------------~~~iDt~~l 129 (186)
T 2p1j_A 80 EEVLPEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLDWE----------------------------RPYIDTLAL 129 (186)
T ss_dssp HHHHHHHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCCCC----------------------------CCEEEHHHH
T ss_pred HHHHHHHHHHHCC--CEEEEECcHHHHHHHHHHHHHcCCCCCC----------------------------CCEEeHHHH
Confidence 4567778888864 578999999999998652 222110 136899865
Q ss_pred HHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000107 1659 SWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSE 1729 (2191)
Q Consensus 1659 awLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~~ 1729 (2191)
+..+. ....++|.. ++. +++.+. . ....|..||.+|..|+..+.....++
T Consensus 130 ~~~~~-~~~~~~L~~---l~~-~~gi~~------~----------~~H~Al~Da~~t~~l~~~l~~~~~~~ 179 (186)
T 2p1j_A 130 AKSLL-KLRSYSLDS---VVE-KLGLGP------F----------RHHRALDDARVTAQVFLRFVEMMKKE 179 (186)
T ss_dssp HHHHT-CCSCCSHHH---HHH-HTTCCS------T----------TCCHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHh-hcCCCCHHH---HHH-HcCCCC------C----------CCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 55554 334555443 333 233221 0 12457789999999888776554443
No 175
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.11 E-value=0.89 Score=56.62 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
..+++++.||+|+|||+++...
T Consensus 147 ~~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3589999999999999887543
No 176
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.90 E-value=0.68 Score=56.09 Aligned_cols=124 Identities=14% Similarity=0.098 Sum_probs=65.2
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----------cC----CEEEEEchhHHH-HHHHHHHHHHHhhccCCe
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----------TG----KMALLVLPYVSI-CAEKAEHLEVLLEPLGRH 600 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~-----------~g----~kaL~I~P~raL-A~q~~~~l~~l~~~lg~~ 600 (2191)
++..|..+++.||+|+|||..+...+....+. .| .+++|+.--..+ ..++.+.++. +|+.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~----~g~~ 169 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH----AGID 169 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH----HTCC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH----cCCC
Confidence 46678999999999999998887666542221 23 688888743322 2233323322 2221
Q ss_pred EEEEeccCCCCCCCCCCceEEE---chHHHHHHHHHhhhcC-CCCccceEEEccccccccc---------chhHHHHHHH
Q 000107 601 VRSYYGNQGGGSLPKDTSVAVC---TIEKANSLVNRMLEEG-RLSEIGIIVIDELHMVADQ---------NRGYLLELLL 667 (2191)
Q Consensus 601 V~~~~G~~~~~~l~~~~~IiV~---TpEkl~~Ll~~l~~~~-~L~~l~lVVIDEaH~l~d~---------~RG~~lE~lL 667 (2191)
...+. -+|.+. +.+.+..++..+.... ....+++||||.+..+... .|...+..++
T Consensus 170 ~~~~~-----------~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~ 238 (322)
T 2i1q_A 170 GQTVL-----------DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHM 238 (322)
T ss_dssp HHHHH-----------HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHH
T ss_pred HHHHh-----------cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 10000 012222 3343333332221111 1246899999999977421 1223456667
Q ss_pred HHHHHhhc
Q 000107 668 TKLRYAAG 675 (2191)
Q Consensus 668 ~kLr~~~~ 675 (2191)
..|+.+..
T Consensus 239 ~~L~~la~ 246 (322)
T 2i1q_A 239 ATLNKLAD 246 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766553
No 177
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.83 E-value=0.68 Score=56.99 Aligned_cols=94 Identities=23% Similarity=0.290 Sum_probs=56.4
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPK 615 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~ 615 (2191)
.++..|..+++.+|+|+|||+.+...+.. +...+.+++|+.--..+.... . ..+|+..
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~-~~~~g~~vlyi~~E~~~~~~~---a----~~lG~~~-------------- 113 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVAN-AQAAGGIAAFIDAEHALDPEY---A----KKLGVDT-------------- 113 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCCCCHHH---H----HHTTCCG--------------
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH-HHhCCCeEEEEECCCCcCHHH---H----HHcCCCH--------------
Confidence 35778899999999999999988665544 344677888886432221111 1 1122210
Q ss_pred CCceEEE---chHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 616 DTSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 616 ~~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.++.|. |.+.+..+++.+... ..+++||||++..+.
T Consensus 114 -~~l~i~~~~~~e~~l~~~~~l~~~---~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 114 -DSLLVSQPDTGEQALEIADMLVRS---GALDIIVIDSVAALV 152 (349)
T ss_dssp -GGCEEECCSSHHHHHHHHHHHHTT---TCCSEEEEECGGGCC
T ss_pred -HHeEEecCCCHHHHHHHHHHHHhc---CCCCEEEEcChHhhc
Confidence 011222 345555555544322 347899999999876
No 178
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.77 E-value=2 Score=50.80 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=29.8
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhc----------CCEEEEEch
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIST----------GKMALLVLP 578 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~----------g~kaL~I~P 578 (2191)
++..|..+++.||+|+|||+.+...+. .+... +.+++|+.-
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~-~~~~g~~~~g~~~~~~~~v~~~~~ 76 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA-QIAGGPDLLEVGELPTGPVIYLPA 76 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH-HHHTCCCTTCCCCCCCCCEEEEES
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH-HHhcCCCcCCCccCCCccEEEEEC
Confidence 477899999999999999998766554 33321 356777653
No 179
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=88.61 E-value=0.97 Score=50.84 Aligned_cols=39 Identities=15% Similarity=-0.015 Sum_probs=30.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchh
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~ 579 (2191)
.++-.++.||.|+|||+-.+..+- +....+.+++|+-|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~-n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVR-RFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH-HHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHH-HHHHcCCeEEEEccc
Confidence 478899999999999977655544 344467899999886
No 180
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.55 E-value=1 Score=55.47 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhc--------CCEEEEEc
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLIST--------GKMALLVL 577 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~--------g~kaL~I~ 577 (2191)
..++++.||+|+|||..+.. +.+.+... +..++++-
T Consensus 45 ~~~vll~G~~G~GKT~la~~-l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY-IFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH-HHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHHHHHhhhhcCCCCceEEEEE
Confidence 56899999999999988743 34444332 56667664
No 181
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.48 E-value=1.2 Score=49.61 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.2
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
.++++.||+|+|||..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999987653
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.32 E-value=1.1 Score=54.11 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
..+++++.||+|+|||+++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHH
Confidence 357899999999999988754
No 183
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.29 E-value=1.2 Score=51.73 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=18.6
Q ss_pred ccCCeEEEEcCCCCchhHHHHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael 560 (2191)
...+++++.||+|+|||+.+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 4567899999999999988754
No 184
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.03 E-value=0.48 Score=58.37 Aligned_cols=58 Identities=34% Similarity=0.318 Sum_probs=48.0
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
.+|.+||||+..-+.+|-+|||+|+++|+.+++.+|.++. +++...|.+|++.|++.+
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~------------~~s~~~~~~~l~~~~~~~ 92 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVA------------GISEGTALKIIQAARKAA 92 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHH------------CCCHHHHHHHHHHHHHHC
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhc------------CCCHHHHHHHHHHHhhhc
Confidence 4688889999999999999999999999999999999984 344455667777666654
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.02 E-value=1.8 Score=54.97 Aligned_cols=37 Identities=8% Similarity=0.145 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhc--CCEEEEEch
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLIST--GKMALLVLP 578 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~--g~kaL~I~P 578 (2191)
..++++.||+|+|||..+.. +...+... +.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHhCCCCeEEEeeH
Confidence 56899999999999988753 44444333 566777654
No 186
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.94 E-value=2.3 Score=53.80 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=38.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeE
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
...+++++++|+|||+++.-.+ ..+...|.+++++. |+|.-+.++.. .+....|+.+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA-~~l~~~G~kVllv~~D~~R~aa~eqL~---~~~~~~gvpv 158 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA-RYFQKRGYKVGVVCSDTWRPGAYHQLR---QLLDRYHIEV 158 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH-HHHHTTTCCEEEEECCCSSTHHHHHHH---HHHGGGTCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHH-HHHHHCCCeEEEEeCCCcchhHHHHHH---HHHHhcCCcE
Confidence 4688999999999999875433 34555778887776 77776655444 3344456554
No 187
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=87.82 E-value=0.48 Score=56.87 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=68.0
Q ss_pred HhcCCCHHHHHHHh---CCCcchHHHHH---------------HHHHHHHHHHHHHHHHhCchhHHHHHHHHHH---HHh
Q 000107 1165 LVQETPVLEVCETF---KVARGMVQALQ---------------ENAGRFASMVSVFCERLGWYDLEGLIAKFQN---RVS 1223 (2191)
Q Consensus 1165 li~e~~~~~i~~~y---~v~rG~lq~l~---------------~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~---RL~ 1223 (2191)
||=|-.+++|.+.| .|+|.-|+.-+ .+|..|+. ...+|..++ .+.+++.. +.-
T Consensus 379 LLIEGDLeEIe~LYteR~IhPNAIRGAveiqLASLAvkfG~g~eTAe~L~~-~agr~l~le-----qi~rdrEvgkL~SV 452 (685)
T 4gfj_A 379 GILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLR-AFGNPERVK-----QLAREFEIEKLASV 452 (685)
T ss_dssp HHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHH-HHSSHHHHH-----HHHHTTCHHHHHTS
T ss_pred EEEEeccHHhhhhhccCCCCHHHHhhhHhhhhhhhhhhcCCchHHHHHHHH-Hhcchhhhh-----hhhhhhhhhccccc
Confidence 45577788888877 67776666542 22222222 222232222 22222211 344
Q ss_pred ccCchhh--------hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHH
Q 000107 1224 FGVRAEI--------VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIK 1293 (2191)
Q Consensus 1224 ~Gv~~EL--------l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~ 1293 (2191)
+||++.- --|..|||||..+|+.|.+. |-|++.+++|++++|.. .+++.+.|+.|+
T Consensus 453 pGikek~sktL~eqeamLtAIaGIGp~tAeRLLEk-FGSVe~Vm~AteDELRe-------------dGIGekqarrI~ 516 (685)
T 4gfj_A 453 EGVGERVLRSLVPGYASLISIRGIDRERAERLLKK-YGGYSKVREAGVEELRE-------------DGLTDAQIRELK 516 (685)
T ss_dssp TTCCHHHHHHHSTTHHHHHTSTTCCHHHHHHHHHH-HTSHHHHHHSCHHHHHH-------------TTCCHHHHHHHH
T ss_pred ccchhhhhcccccceeeeeccCCCCHHHHHHHHHH-hcCHHHHHhCCHHHHHH-------------ccccHHHHHHHh
Confidence 6766433 35789999999999999887 66999999999999933 356667777665
No 188
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=87.81 E-value=0.36 Score=47.80 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=38.2
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhh
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFE 1272 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~ 1272 (2191)
-.|..||+||..-+|.|.++||.|+++|...++.++...|..
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~ 45 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWE 45 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHH
Confidence 467889999999999999999999999999999998887754
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.14 E-value=0.97 Score=55.42 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=32.0
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----cCCEEEEEchh
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----TGKMALLVLPY 579 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~-----~g~kaL~I~P~ 579 (2191)
++..|..+++.||+|+|||..+...+...... .+.+++|+.-.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 56678999999999999999887655543222 36788888654
No 190
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.80 E-value=2.2 Score=52.12 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=25.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhc---CCEEEEEc
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLIST---GKMALLVL 577 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~---g~kaL~I~ 577 (2191)
.+..+++.||+|+|||..+.. +.+.+... +..++++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~-l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKF-VLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHH-HHHHHHHHTCSSCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHHHhcCCceEEEEE
Confidence 367899999999999988754 33444333 55666665
No 191
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.67 E-value=0.82 Score=56.40 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=56.7
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
++..|+.+++.+|+|+|||..+...+.. +...+.+++|+..-..+-...+ .. +|+..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~-~~~~g~~vlyid~E~s~~~~~a---~~----~g~~~--------------- 115 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAA-AQREGKTCAFIDAEHALDPIYA---RK----LGVDI--------------- 115 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCCCCHHHH---HH----TTCCG---------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH-HHHCCCeEEEEeCCCCccHHHH---HH----cCCCh---------------
Confidence 5677899999999999999998665544 3446778888875322212211 11 22210
Q ss_pred CceEEE---chHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 617 TSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 617 ~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.++.+. |.+.+..+++.+... ..+++||||.+..+.
T Consensus 116 ~~l~i~~~~~~e~~~~~~~~l~~~---~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 116 DNLLCSQPDTGEQALEICDALARS---GAVDVIVVDSVAALT 154 (356)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHHH---TCCSEEEEECGGGCC
T ss_pred hheeeeCCCCHHHHHHHHHHHHhc---cCCCEEEEcCHHHhc
Confidence 012222 345555555544332 357899999999876
No 192
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.33 E-value=0.77 Score=52.43 Aligned_cols=40 Identities=20% Similarity=0.074 Sum_probs=30.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYV 580 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~r 580 (2191)
.|.-.+|++|-|+|||+.++-.+ .+....+.+++++.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~-~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL-RRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH-HHHHHTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHH-HHHHHcCCceEEEEecc
Confidence 46778999999999998665444 55556788999998863
No 193
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.17 E-value=2.5 Score=50.11 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.++.+++.||+|+|||+.+-.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHH
Confidence 368999999999999988753
No 194
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=86.11 E-value=0.63 Score=46.08 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=37.6
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhh
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFE 1272 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~ 1272 (2191)
+|..||+||..-+|.|..+||.|+++|...++.+.-..|..
T Consensus 5 ~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk~ 45 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWE 45 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHH
Confidence 67899999999999999999999999999999988877743
No 195
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.03 E-value=1.1 Score=55.10 Aligned_cols=22 Identities=9% Similarity=0.419 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
..+++++.||+|+|||+++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 4679999999999999887543
No 196
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.00 E-value=1.4 Score=55.14 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=30.7
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-----cCCEEEEEch
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-----TGKMALLVLP 578 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~-----~g~kaL~I~P 578 (2191)
++..|..+.|.+|+|+|||+.+...++..... .+.+++|+.-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 56678999999999999998887555443332 2467888754
No 197
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.73 E-value=2.2 Score=52.32 Aligned_cols=34 Identities=6% Similarity=0.029 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEEEc
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLIST-GKMALLVL 577 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~I~ 577 (2191)
++++.||+|+|||..+.. +.+.+... +..++++-
T Consensus 46 ~~li~G~~G~GKTtl~~~-l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK-LWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhhhcCeeEEEEe
Confidence 899999999999988743 44444433 45666664
No 198
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=85.44 E-value=0.54 Score=62.09 Aligned_cols=101 Identities=23% Similarity=0.221 Sum_probs=70.4
Q ss_pred cCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHH
Q 000107 1167 QETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARA 1246 (2191)
Q Consensus 1167 ~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~ 1246 (2191)
++--+.++++-|.+..++|..| +.+|-..-..++..+...-.....+=|.. +.||+||..+|+.
T Consensus 464 ~~g~I~~~aDL~~L~~~~L~~l---------------~gfG~Ksa~nLl~aIe~sk~~~l~R~L~a-lgi~~VG~~~Ak~ 527 (671)
T 2owo_A 464 EKEYVHTPADLFKLTAGKLTGL---------------ERMGPKSAQNVVNALEKAKETTFARFLYA-LGIREVGEATAAG 527 (671)
T ss_dssp HTTCCSSGGGGGTCCHHHHHTS---------------TTCCHHHHHHHHHHHHHHTBCCHHHHHHH-TTCTTCCHHHHHH
T ss_pred HcCCCCCHHHHHhhCHHHhhcc---------------cccchhHHHHHHHHHHHHhcCChhheehh-hcccCccHHHHHH
Confidence 3444566666777765554433 12333345567777665433322233333 3899999999999
Q ss_pred HHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHH
Q 000107 1247 LYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGA 1296 (2191)
Q Consensus 1247 Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A 1296 (2191)
|.++ |.|++.|..|+.++|..+ ++++..+|.+|++-.
T Consensus 528 La~~-Fgsl~~l~~As~eeL~~i------------~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 528 LAAY-FGTLEALEAASIEELQKV------------PDVGIVVASHVHNFF 564 (671)
T ss_dssp HHHH-HCSHHHHHTCCHHHHTTS------------TTCCHHHHHHHHHHH
T ss_pred HHHH-cCCHHHHHhCCHHHHhhc------------CCCCHHHHHHHHHHH
Confidence 9998 999999999999998877 578889999998754
No 199
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.26 E-value=2.5 Score=47.56 Aligned_cols=19 Identities=16% Similarity=0.471 Sum_probs=16.2
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
..+++.||+|+|||..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp SEEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3799999999999988753
No 200
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.74 E-value=2.5 Score=54.76 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.+.++++||+|+|||.++... .+.+ +..++.+-
T Consensus 77 ~~~lLL~GppGtGKTtla~~l-a~~l---~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLV-AQEL---GYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHH-HHHT---TCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHH-HHHc---CCCEEEEe
Confidence 478999999999999987543 3332 55566554
No 201
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=84.72 E-value=3.7 Score=49.70 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=17.8
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
..+.+++.||+|+|||+.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHH
Confidence 347899999999999988753
No 202
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=84.47 E-value=1.3 Score=58.47 Aligned_cols=92 Identities=18% Similarity=0.162 Sum_probs=61.4
Q ss_pred CCCHHHHHhhhhccccc--CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeE
Q 000107 524 KLYPWQVECLHVDGVLQ--RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 524 ~l~p~Q~eal~~~~il~--gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
.++.-|.+++.. +.. ....++.|+-|.|||.+.-+++-.. . ..+++++|+.+-+....+ +...
T Consensus 175 ~~T~dQ~~al~~--~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~---~~~~vtAP~~~a~~~l~~----~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQ--LMTMPPGVAAVTAARGRGKSALAGQLISRI-A---GRAIVTAPAKASTDVLAQ----FAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHH--HTTCCSEEEEEEECTTSSHHHHHHHHHHHS-S---SCEEEECSSCCSCHHHHH----HHGG-----
T ss_pred CCCHHHHHHHHH--HHHhhhCeEEEecCCCCCHHHHHHHHHHHH-H---hCcEEECCCHHHHHHHHH----HhhC-----
Confidence 678899999865 433 4568999999999997766655432 2 347999999886654332 2111
Q ss_pred EEEeccCCCCCCCCCCceEEEchHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 602 RSYYGNQGGGSLPKDTSVAVCTIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 602 ~~~~G~~~~~~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.|-+..|.. ++. .....++|||||+=+|.
T Consensus 240 ----------------~i~~~~Pd~---~~~------~~~~~dlliVDEAAaIp 268 (671)
T 2zpa_A 240 ----------------KFRFIAPDA---LLA------SDEQADWLVVDEAAAIP 268 (671)
T ss_dssp ----------------GCCBCCHHH---HHH------SCCCCSEEEEETGGGSC
T ss_pred ----------------CeEEeCchh---hhh------CcccCCEEEEEchhcCC
Confidence 133445654 221 23458999999999985
No 203
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.42 E-value=1.7 Score=54.24 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=18.6
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+...+.+++.||+|+|||+.+-
T Consensus 179 i~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHH
Confidence 4456899999999999998874
No 204
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=84.35 E-value=1.1 Score=50.81 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchhHHHHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEILMLR 564 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~ 564 (2191)
-.++.|+.|||||+.+...++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999987554433
No 205
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=84.13 E-value=0.85 Score=60.19 Aligned_cols=98 Identities=22% Similarity=0.283 Sum_probs=68.5
Q ss_pred CHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHH
Q 000107 1170 PVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYK 1249 (2191)
Q Consensus 1170 ~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~ 1249 (2191)
.+..+++-|...+++|..| +.+|-.....++..+...-.....+=|..| .||+||..+|+.|++
T Consensus 462 ~I~~~~DL~~L~~e~L~~l---------------~g~G~Ksa~nLl~aIe~sk~~~l~R~L~al-GI~~VG~~~Ak~La~ 525 (667)
T 1dgs_A 462 LVRDVADLYHLRKEDLLGL---------------ERMGEKSAQNLLRQIEESKHRGLERLLYAL-GLPGVGEVLARNLAR 525 (667)
T ss_dssp SCSSGGGGGGGCCHHHHTT---------------SSCCSTTHHHHHHHHHHGGGCCHHHHHHHT-TCSSCCHHHHHHHHH
T ss_pred CCCCHHHHHhcCHHHHhcc---------------cccchhhHHHHHHHHHHHhcCcHHHhhHhh-ccCCccHHHHHHHHH
Confidence 4455555666665544332 123444566777777665443222333333 899999999999998
Q ss_pred cCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHH
Q 000107 1250 AGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGA 1296 (2191)
Q Consensus 1250 aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A 1296 (2191)
. |.|++.|..|++++|..+ ++++..+|.+|++-.
T Consensus 526 ~-Fgsl~~l~~As~eeL~~I------------~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 526 R-FGTMDRLLEASLEELIEV------------EEVGELTARAILETL 559 (667)
T ss_dssp T-TSBHHHHTTCCHHHHHTS------------TTCCHHHHHHHHHHH
T ss_pred H-cCCHHHHHhCCHHHHHhc------------cCcCHHHHHHHHHHH
Confidence 7 999999999999999876 578889999998754
No 206
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=83.77 E-value=1.7 Score=53.38 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
..+++++.||+|+|||+++-.
T Consensus 83 ~~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHH
Confidence 357899999999999998753
No 207
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.37 E-value=1.9 Score=62.55 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=63.5
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
++-.|+.+.+.+|.|||||+.+.-.+. .....|..++||.+--+|....+ ..+|+.+.
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a-~~~~~g~~~~~i~~e~~~~~~~~-------~~~Gv~~~-------------- 1484 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIA-AAQREGKTCAFIDAEHALDPIYA-------RKLGVDID-------------- 1484 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH-HHHHTTCCEEEECTTSCCCHHHH-------HHTTCCGG--------------
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHH-HHHhcCCeEEEEecCCCCCHHHH-------HHcCCCHH--------------
Confidence 444679999999999999999865554 44557899999998777765542 23344321
Q ss_pred CceEEEch---HHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 617 TSVAVCTI---EKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 617 ~~IiV~Tp---Ekl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
++++.-| |....++..+.... .+++||||.+--+.
T Consensus 1485 -~l~~~~p~~~e~~l~~~~~~~~s~---~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1485 -NLLCSQPDTGEQALEICDALARSG---AVDVIVVDSVAALT 1522 (1706)
T ss_dssp -GCEEECCSSHHHHHHHHHHHHHHT---CCSEEEESCSTTCC
T ss_pred -HeEEeCCCcHHHHHHHHHHHHHcC---CCCEEEEccHHhCC
Confidence 2555555 66666666655543 46899999876553
No 208
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.67 E-value=1.1 Score=65.87 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=57.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
++..++++++++|+|+|||..+...+... ...|.+++|+..--++....+ +.+ |+.+.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea-~~~G~~v~Fi~~e~~~~~l~a---~~~----G~dl~-------------- 1480 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAA-QREGKTCAFIDAEHALDPIYA---RKL----GVDID-------------- 1480 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEECTTSCCCHHHH---HHT----TCCTT--------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEEcccccCHHHH---HHc----CCCch--------------
Confidence 35568999999999999999987665544 456889999986544433332 222 21110
Q ss_pred CceEEE---chHHHHHHHHHhhhcCCCCccceEEEcccccc
Q 000107 617 TSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 617 ~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
.+.|. +.|++..+++++.+. ..+++|||||+.-+
T Consensus 1481 -~l~v~~~~~~E~~l~~~~~lvr~---~~~~lVVIDsi~al 1517 (2050)
T 3cmu_A 1481 -NLLCSQPDTGEQALEICDALARS---GAVDVIVVDSVAAL 1517 (2050)
T ss_dssp -TCEEECCSSHHHHHHHHHHHHHH---TCCSEEEESCGGGC
T ss_pred -hceeecCChHHHHHHHHHHHHhc---CCCCEEEEcChhHh
Confidence 02222 235655555554332 35789999999643
No 209
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=82.61 E-value=3.3 Score=56.17 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=65.4
Q ss_pred HHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCC
Q 000107 775 VVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLT 854 (2191)
Q Consensus 775 ~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs 854 (2191)
.+..+.+++|.+||+.-+...+..+.+.+...+ ..|+.+||+++
T Consensus 413 ~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~g------------------------------------i~v~~l~G~~~ 456 (780)
T 1gm5_A 413 NYEAGFQTAFMVPTSILAIQHYRRTVESFSKFN------------------------------------IHVALLIGATT 456 (780)
T ss_dssp HHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSS------------------------------------CCEEECCSSSC
T ss_pred HHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcC------------------------------------ceEEEEeCCCC
Confidence 345678999999999988888888776653221 23889999999
Q ss_pred HHHHHHHHHHhhcCCceEEEecccc-cccCCCCCceEE-ee
Q 000107 855 VEEREVVETCYRKGLVRVLTATSTL-AAGVNLPARRVI-FR 893 (2191)
Q Consensus 855 ~~eR~~Ve~~Fr~G~ikVLVATstL-a~GVNLPav~VV-I~ 893 (2191)
..+|..+.+.+.+|..+|+|+|..+ ...+++....+| ||
T Consensus 457 ~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 457 PSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp HHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEec
Confidence 9999999999999999999999743 455777776655 44
No 210
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.44 E-value=2.9 Score=50.25 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.3
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
..+++.+|+|+|||..+..
T Consensus 49 ~~~L~~G~~G~GKT~la~~ 67 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKA 67 (324)
T ss_dssp SEEEECSSTTSSHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHH
Confidence 4568888899999988754
No 211
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=82.30 E-value=0.92 Score=52.01 Aligned_cols=51 Identities=22% Similarity=0.174 Sum_probs=44.0
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
.|+.|||||..+|+.|.+. |.|+.+|.+|++++|..+ ++++.+.|++|.+.
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~-fgs~~~l~~a~~e~L~~v------------~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILER-FGSLERFFTASKAEISKV------------EGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHS------------TTCCHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhhC------------CCCCHHHHHHHHHH
Confidence 3679999999999999997 889999999999998776 56778888888763
No 212
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=82.14 E-value=1.1 Score=54.30 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=22.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHH
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLR 564 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~ 564 (2191)
++..+..+++.+|+|+|||..+...+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4667788899999999999887665443
No 213
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.13 E-value=5.6 Score=49.19 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=24.3
Q ss_pred cCCeEEE--EcCCCCchhHHHHHHHHHHHHhc------CCEEEEEc
Q 000107 540 QRRNLVY--CASTSAGKSFVAEILMLRRLIST------GKMALLVL 577 (2191)
Q Consensus 540 ~gknlIi--~APTGSGKTlvael~iL~~ll~~------g~kaL~I~ 577 (2191)
.+..+++ +||+|+|||..+... .+.+... +..++++.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~-~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFT-VKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHH-HHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHH-HHHHHHHHhccCCceeEEEEE
Confidence 3568888 999999999887543 3333321 44566664
No 214
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=81.98 E-value=0.93 Score=51.37 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=45.0
Q ss_pred hcCCCCCCHHHHHHHHHcCCCC---HHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHH
Q 000107 1233 LTTIPYVKGSRARALYKAGLRT---PLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARK 1298 (2191)
Q Consensus 1233 L~~ip~v~~~RAR~Ly~aG~~t---~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~ 1298 (2191)
|..|+|||..+|++|.+. |.+ ...|+++++++|.++ ++++.+.|.+|+.+-+.
T Consensus 75 L~~V~GIGpk~A~~iL~~-f~~~~l~~aI~~~d~~~L~~v------------pGIG~K~A~rI~~elk~ 130 (203)
T 1cuk_A 75 LIKTNGVGPKLALAILSG-MSAQQFVNAVEREEVGALVKL------------PGIGKKTAERLIVEMKD 130 (203)
T ss_dssp HHHSSSCCHHHHHHHHHH-SCHHHHHHHHHTTCHHHHHTS------------TTCCHHHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHhh-CChHHHHHHHHhCCHHHHhhC------------CCCCHHHHHHHHHHHHH
Confidence 557999999999999985 677 778999999999988 67888999999876543
No 215
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=81.97 E-value=0.33 Score=55.72 Aligned_cols=77 Identities=29% Similarity=0.338 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCH
Q 000107 1184 MVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASI 1263 (2191)
Q Consensus 1184 ~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~ 1263 (2191)
.||.+++.|.+||=..-+ ++|-..- --..|..|||||..||+.|.+. |.|++.|.+|+.
T Consensus 146 llq~irDEaHRFAIt~hr-----------------~~r~k~~---~~s~L~~IpGIG~k~ak~Ll~~-FGSl~~i~~As~ 204 (226)
T 3c65_A 146 LLQRIQDEVHRFAVMFHR-----------------KTRQKTM---FHSVLDDIPGVGEKRKKALLNY-FGSVKKMKEATV 204 (226)
T ss_dssp HHHHHHHHHHHHTTC-----------------------------------------------------------------
T ss_pred hhhhccchhhhhhhhccc-----------------ccccccc---ccccccccCCCCHHHHHHHHHH-hCCHHHHHhCCH
Confidence 378888999888743211 1111111 1256789999999999999997 999999999999
Q ss_pred HHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1264 SEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1264 ~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
++|..+ . ++..+|..|++
T Consensus 205 eeL~~V-G------------IG~~~A~~I~~ 222 (226)
T 3c65_A 205 EELQRA-N------------IPRAVAEKIYE 222 (226)
T ss_dssp -------------------------------
T ss_pred HHHHHc-C------------CCHHHHHHHHH
Confidence 998876 1 44566777654
No 216
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=81.42 E-value=1.8 Score=52.29 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=58.9
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHh-cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCC
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLIS-TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLP 614 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~-~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~ 614 (2191)
.++-.| .+++.+|+|+|||..++..+...... .+.+++||..-.++.... +++ +|+..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r---a~~----lGvd~------------- 82 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY---LRS----MGVDP------------- 82 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH---HHH----TTCCG-------------
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH---HHH----hCCCH-------------
Confidence 346667 79999999999999987766654433 278999998765554332 222 23211
Q ss_pred CCCceEEEc---hHHH-HHHHHHhhhcCCCCccceEEEccccccc
Q 000107 615 KDTSVAVCT---IEKA-NSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 615 ~~~~IiV~T---pEkl-~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.++++.. .|.+ ..+++.+ ....-..+++||||=+..+.
T Consensus 83 --d~llv~~~~~~E~~~l~i~~~l-~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 --ERVIHTPVQSLEQLRIDMVNQL-DAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --GGEEEEECSBHHHHHHHHHHHH-HTCCTTCCEEEEEECSTTCB
T ss_pred --HHeEEEcCCCHHHHHHHHHHHH-HHhhccCceEEEEecccccc
Confidence 1244444 3444 4444433 11122458999999998874
No 217
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=80.77 E-value=0.96 Score=50.76 Aligned_cols=53 Identities=25% Similarity=0.176 Sum_probs=44.4
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCC---HHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRT---PLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGAR 1297 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t---~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~ 1297 (2191)
.|..|||||+.+|++|.+. |.+ ...|+.+++++|.++ ++++.+.|.+|+.+-+
T Consensus 73 ~L~~v~GIGpk~A~~iL~~-f~~~~l~~aI~~~d~~~L~~v------------pGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSA-LPPRLLARALLEGDARLLTSA------------SGVGRRLAERIALELK 128 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHH-SCHHHHHHHHHTTCHHHHTTS------------TTCCHHHHHHHHHHHT
T ss_pred HHhcCCCcCHHHHHHHHHh-CChHHHHHHHHhCCHHHHHhC------------CCCCHHHHHHHHHHHH
Confidence 3668999999999999986 666 667999999999887 6788899999987654
No 218
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.72 E-value=7.4 Score=45.06 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
.+.+++.||+|+|||+.+-.
T Consensus 45 ~~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 56799999999999988753
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=80.47 E-value=2.2 Score=54.79 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=19.1
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+....++++.||+|+|||+++-.
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHH
Confidence 34567899999999999998754
No 220
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.28 E-value=5.4 Score=50.28 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=19.1
Q ss_pred ccccCCeEEEEcCCCCchhHHHH
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvae 559 (2191)
++...+.+++.||+|+|||+.+-
T Consensus 202 g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHH
Confidence 34456889999999999998874
No 221
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.24 E-value=3.4 Score=56.95 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~i 562 (2191)
..+++++||+|+|||.++....
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHH
Confidence 5689999999999999876543
No 222
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=80.03 E-value=4.2 Score=47.30 Aligned_cols=98 Identities=9% Similarity=-0.005 Sum_probs=56.8
Q ss_pred HHHHHHHHhhccC--CccEEEech-HHHHHHHHhc----CcccccccCccccccccccccccccccccccCCCCccchHH
Q 000107 1584 QRWKRIGEIMEKR--DVRKFTWNM-KVQIQVLKHA----AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMC 1656 (2191)
Q Consensus 1584 ~~~~~L~~lLe~~--~v~kv~hNl-K~dl~vL~~~----gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~ 1656 (2191)
+.+..+..++.+. ....|+||+ .||+..|++. |+.... .-..++||+
T Consensus 103 ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~--------------------------~~~~~iDtl 156 (242)
T 3mxm_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL--------------------------DGTFCVDSI 156 (242)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT--------------------------TTCEEEEHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCc--------------------------cCCeEeehH
Confidence 5667778888752 256899996 9999988652 332110 001258998
Q ss_pred HHHHhcC----C----CCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1657 IVSWILW----P----DDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLL 1726 (2191)
Q Consensus 1657 lAawLL~----P----~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L 1726 (2191)
..++.+. | ....++ |..++.++++.+.. ..+.|..||.+|.+++..+...+
T Consensus 157 ~l~r~l~~~~~p~~~~~~~~~~---L~~l~~~~~gi~~~----------------~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 157 AALKALEQASSPSGNGSRKSYS---LGSIYTRLYWQAPT----------------DSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp HHHHHHHHHHCC------CCCS---HHHHHHHHHSSCCS----------------STTSHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHHHhhcCccccCCCCCcC---HHHHHHHHhCCCCC----------------CCcChHHHHHHHHHHHHHHHHHH
Confidence 6655332 3 234554 55455454443210 12457789999988877655443
No 223
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.87 E-value=2.8 Score=50.74 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
..++++.||+|+|||+++..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 36899999999999988754
No 224
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=79.69 E-value=0.37 Score=58.68 Aligned_cols=64 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred ccCchhhhhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHH
Q 000107 1224 FGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKI 1299 (2191)
Q Consensus 1224 ~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l 1299 (2191)
||....-.+|-+||||+..-+.+|-++||+|+++++.+++.+|.++. +++...|.+|++.|++.
T Consensus 5 ~~~~~~~~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~------------g~s~~~~~~~~~~~~~~ 68 (324)
T 2z43_A 5 VEQKKNIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAA------------GIPLSTAQKIIKEARDA 68 (324)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred hcCCCCCccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhh------------CCCHHHHHHHHHHHHhh
Confidence 45556667899999999999999999999999999999999998873 34445566677666554
No 225
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=79.57 E-value=2.3 Score=54.03 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
.++++.||+|+|||+++..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 5799999999999998754
No 226
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.96 E-value=5.4 Score=50.37 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=18.7
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+...+.+++.||+|+|||+.+-
T Consensus 212 ~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHH
Confidence 4456899999999999998874
No 227
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.62 E-value=4.6 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=19.2
Q ss_pred ccccCCeEEEEcCCCCchhHHHH
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvae 559 (2191)
++...+.+|+.||+|+|||+.+-
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHH
Confidence 34557899999999999998864
No 228
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=78.39 E-value=1.6 Score=57.33 Aligned_cols=61 Identities=21% Similarity=0.332 Sum_probs=46.6
Q ss_pred CchhhhhhcCCCCCCHHHHHHHHHc-CCCCHHHHHcCCH-HHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHH
Q 000107 1226 VRAEIVELTTIPYVKGSRARALYKA-GLRTPLAIAEASI-SEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARK 1298 (2191)
Q Consensus 1226 v~~ELl~L~~ip~v~~~RAR~Ly~a-G~~t~~~la~a~~-~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~ 1298 (2191)
.+.-+..|++|+|||+..|+++|+. |++|+++|..|-. .+|.+ -++++.+.|.+|+.+.+.
T Consensus 88 ~~~~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~------------~~GiG~k~a~~i~~~l~~ 150 (575)
T 3b0x_A 88 VPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTR------------LKGFGPKRAERIREGLAL 150 (575)
T ss_dssp SCHHHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGG------------STTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCccc------------CCCCCccHHHHHHHHHHH
Confidence 4556788999999999999999998 9999999986521 22211 256888889998777654
No 229
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.98 E-value=1.6 Score=54.67 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=47.1
Q ss_pred hhhcCCC--CCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1231 VELTTIP--YVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1231 l~L~~ip--~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
.+|-+|+ ||+...+++|-+|||+|+++|+.+++.+|.++. +++...|.+|++.|++++
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~------------gis~~~~~~i~~~a~~~~ 140 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIK------------GISEAKADKLLNEAARLV 140 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTST------------TCCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHh------------CCCHHHHHHHHHHHHHhc
Confidence 3454555 488999999999999999999999999999874 455667888888877653
No 230
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.92 E-value=3.2 Score=52.46 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=18.6
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+...+.+++.||+|+|||+.+-
T Consensus 212 ~~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHH
Confidence 4456899999999999998864
No 231
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=77.85 E-value=5.7 Score=48.47 Aligned_cols=19 Identities=16% Similarity=0.471 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
..++++||+|+|||..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~ 57 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARL 57 (373)
T ss_dssp SEEEEESCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3589999999999988754
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.59 E-value=2 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=18.6
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
....+.+++.||+|+|||..+..
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHH
Confidence 33457899999999999998754
No 233
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=76.80 E-value=22 Score=40.47 Aligned_cols=99 Identities=11% Similarity=0.123 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcc---CCccEEEechHHHHHHHHhc----CcccccccCccccccccccccccccccccccCCCCccchHH
Q 000107 1584 QRWKRIGEIMEK---RDVRKFTWNMKVQIQVLKHA----AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMC 1656 (2191)
Q Consensus 1584 ~~~~~L~~lLe~---~~v~kv~hNlK~dl~vL~~~----gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~ 1656 (2191)
..++.+..++.+ .+...|+||+.||+.+|++. |+.... +....++||+
T Consensus 110 ~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p-------------------------~~~~~~iDt~ 164 (224)
T 2f96_A 110 EIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNP-------------------------FHPFSSFDTA 164 (224)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCC-------------------------EEEEEEEEHH
T ss_pred HHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCC-------------------------ccccceeeHH
Confidence 344444444432 34578999999999988652 332100 0001368999
Q ss_pred HHHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000107 1657 IVSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVS 1728 (2191)
Q Consensus 1657 lAawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~ 1728 (2191)
..+..+.|. ++ |..++. +++.+. .+ ...+.|..||.+|.+|+..+...+.+
T Consensus 165 ~l~~~~~~~---~~---L~~l~~-~~gi~~------~~--------~~~H~Al~Da~~ta~l~~~l~~~~~~ 215 (224)
T 2f96_A 165 TLAGLAYGQ---TV---LAKACQ-AAGMEF------DN--------REAHSARYDTEKTAELFCGIVNRWKE 215 (224)
T ss_dssp HHHHHHHSC---CS---HHHHHH-HTTCCC------CT--------TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC---CC---HHHHHH-HcCCCc------CC--------CCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 776666563 33 443333 233220 00 01345778999999998887766543
No 234
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.53 E-value=5.6 Score=47.36 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=15.7
Q ss_pred eEEEEcCCCCchhHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael 560 (2191)
++++.||+|+|||..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp CEEEECSTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 599999999999988754
No 235
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.51 E-value=4 Score=50.33 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
...++++.||+|+|||.++..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHH
Confidence 356899999999999988754
No 236
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=76.40 E-value=6.2 Score=50.47 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=17.6
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
-.+.+++.||+|+|||+.+-.
T Consensus 48 ~p~gvLL~GppGtGKT~Lara 68 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARA 68 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356799999999999988753
No 237
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=75.87 E-value=3.4 Score=53.89 Aligned_cols=50 Identities=30% Similarity=0.200 Sum_probs=44.0
Q ss_pred cCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHH
Q 000107 1234 TTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGA 1296 (2191)
Q Consensus 1234 ~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A 1296 (2191)
+-||+||...|+.|.+. |.|++.|..|+.++|..+ ++++..+|.+|++--
T Consensus 515 LGI~~vG~~~a~~La~~-f~sl~~l~~a~~e~l~~i------------~giG~~~A~si~~ff 564 (586)
T 4glx_A 515 LGIREVGEATAAGLAAY-FGTLEALEAASIEELQKV------------PDVGIVVASHVHNFF 564 (586)
T ss_dssp TTCTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTS------------TTCCHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHH-cCCHHHHHccCHHHHhcC------------CCccHHHHHHHHHHH
Confidence 57999999999999765 899999999999998877 678999999998854
No 238
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.73 E-value=5.8 Score=49.80 Aligned_cols=22 Identities=14% Similarity=0.437 Sum_probs=18.4
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+...+.+++.||+|+|||+.+-
T Consensus 213 i~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHH
Confidence 3446899999999999998764
No 239
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.69 E-value=10 Score=45.76 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=16.3
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
.++++.||+|+|||..+..
T Consensus 59 ~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5699999999999988753
No 240
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=73.94 E-value=3.3 Score=49.59 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
..++++.||+|+|||.++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 47899999999999988753
No 241
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.89 E-value=3.9 Score=59.54 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=55.8
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
++..|..+++.||+|+|||..+...+.. +...+.+++|+.--.... +.. ...+|+..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~-aa~~g~~VlyiS~Ees~~-ql~------A~~lGvd~--------------- 784 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA-AQREGKTCAFIDAEHALD-PIY------ARKLGVDI--------------- 784 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH-HHHTTCCEEEECTTSCCC-HHH------HHHTTCCG---------------
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH-HHHcCCCeEEEeccchHH-HHH------HHHcCCCh---------------
Confidence 4677899999999999999988665544 344677888876432221 111 11122211
Q ss_pred CceEEE---chHHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 617 TSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 617 ~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
.+++|. +.+.+...++++... ..+++||||++..+.
T Consensus 785 ~~L~i~~~~~leei~~~l~~lv~~---~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 785 DNLLCSQPDTGEQALEICDALARS---GAVDVIVVDSVAALT 823 (1706)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHHH---TCCSEEEESCSTTCC
T ss_pred hheEEecCCcHHHHHHHHHHHHHc---cCCCEEEEechhhhc
Confidence 012333 334444444443332 357899999999886
No 242
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=73.67 E-value=6.7 Score=46.75 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.9
Q ss_pred eEEEEcCCCCchhHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael 560 (2191)
++++.||+|+|||..+..
T Consensus 48 ~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 699999999999988753
No 243
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=73.48 E-value=13 Score=44.62 Aligned_cols=33 Identities=6% Similarity=0.153 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhhhcCCCCccceEEEcccccccc
Q 000107 624 IEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD 656 (2191)
Q Consensus 624 pEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d 656 (2191)
.+.+..++......+...+..+|||||+|.+..
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~ 96 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ 96 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH
Confidence 334445555544444566789999999999863
No 244
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=73.48 E-value=2.5 Score=50.03 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcccceeccCCCccCCCHHHHHHHhcCCChhhHHHHHHHHh
Q 000107 997 VKSAQDSLRWLCHRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLDDLS 1049 (2191)
Q Consensus 997 ~~~~~~al~~L~~~~~i~~~~~~~~~~~T~LG~a~~~s~L~p~~a~~l~~~L~ 1049 (2191)
.+++..|++.|...|+++ +++ .+|++|+.++..|++|..|++++....
T Consensus 17 ~~~l~~A~~~L~~LgAld--~~g---~lT~lG~~ma~lPl~P~lakmLl~a~~ 64 (270)
T 3i4u_A 17 METLITAMEQLYTLGALD--DEG---LLTRLGRRMAEFPLEPMLCKMLIMSVH 64 (270)
T ss_dssp HHHHHHHHHHHHHHTSBC--TTS---CBCHHHHHHTTSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcC--CCC---CccHHHHHHHhCCCCHHHHHHHHHhhh
Confidence 467889999999999995 222 599999999999999999999988754
No 245
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=73.46 E-value=3.3 Score=46.02 Aligned_cols=39 Identities=13% Similarity=0.019 Sum_probs=30.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchh
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~ 579 (2191)
.|+-.++.||.|+|||+.+.-.+ .+....+.+++++.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~-~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV-EIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH-HHHHHTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHH-HHHHHCCCeEEEEeec
Confidence 36778999999999999875444 3444568889999887
No 246
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=73.20 E-value=3.8 Score=50.38 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=36.8
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
+|+-.|+|||+..++.|...|++|+.||+.+++..|.+.+
T Consensus 178 lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~f 217 (356)
T 4dez_A 178 RPPDALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTAF 217 (356)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHHH
T ss_pred CcHHHHcCCchhHHHHHHHcCCCeecccccCCHHHHHHHh
Confidence 5778999999999999999999999999999999887764
No 247
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=73.06 E-value=5.9 Score=58.50 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=66.1
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCC
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKD 616 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~ 616 (2191)
++..|.-+++.|++|+|||..+...+.. +...+.+++|+.---...+.++ . .+|+. .
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~-~a~~g~~VlyiS~Ees~~ql~A---~----rlG~~---------------~ 784 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA-AQREGKTCAFIDAEHALDPIYA---R----KLGVD---------------I 784 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH-HHTTTCCEEEECTTSCCCHHHH---H----HTTCC---------------T
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHH-HHhcCCcEEEEECCCcHHHHHH---H----HcCCC---------------c
Confidence 4667899999999999999887655544 4445678888864322222211 1 12211 0
Q ss_pred CceEEE---chHHHHHHHHHhhhcCCCCccceEEEcccccccc-c---c----hhH-----HHHHHHHHHHHhhc
Q 000107 617 TSVAVC---TIEKANSLVNRMLEEGRLSEIGIIVIDELHMVAD-Q---N----RGY-----LLELLLTKLRYAAG 675 (2191)
Q Consensus 617 ~~IiV~---TpEkl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~d-~---~----RG~-----~lE~lL~kLr~~~~ 675 (2191)
.+|.+. |.+.+...++++... ..+++||||.++.+.. . + +.. .+..++..|+.++.
T Consensus 785 ~~l~i~~~~~i~~i~~~~r~l~~~---~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAk 856 (2050)
T 3cmu_A 785 DNLLCSQPDTGEQALEICDALARS---GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 856 (2050)
T ss_dssp TTCEEECCSSHHHHHHHHHHHHHH---TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cceEEecCCCHHHHHHHHHHHhhc---cCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 133343 455555555554332 2578999999998863 1 1 111 24556667776654
No 248
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=72.69 E-value=3.2 Score=46.24 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=26.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
+++++.||+|+|||..+. ++...+...+..++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHcCCeEEEEE
Confidence 799999999999998864 44455555566666553
No 249
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.37 E-value=3.7 Score=50.42 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=29.4
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHh--c---CCEEEEEch
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLIS--T---GKMALLVLP 578 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~--~---g~kaL~I~P 578 (2191)
++..|.-+.+.+|+|+|||+.+...+...... . +++++|+.-
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 46678999999999999998876655432111 2 357788753
No 250
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=72.00 E-value=15 Score=47.74 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRL 566 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~l 566 (2191)
...+++|.|.||||||.+.-..++..+
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999988655555443
No 251
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.70 E-value=9.4 Score=46.27 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=15.6
Q ss_pred eEEEEcCCCCchhHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael 560 (2191)
++++.||+|+|||..+..
T Consensus 48 ~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp CEEEECSSSSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 399999999999988754
No 252
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=71.36 E-value=13 Score=52.63 Aligned_cols=83 Identities=11% Similarity=0.155 Sum_probs=64.7
Q ss_pred HHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCC
Q 000107 774 EVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGL 853 (2191)
Q Consensus 774 e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagL 853 (2191)
.....+.+++|.|||+.-+.+.+..+.+.+... +..|..+|+..
T Consensus 647 ~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~------------------------------------~i~v~~l~~~~ 690 (1151)
T 2eyq_A 647 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANW------------------------------------PVRIEMISRFR 690 (1151)
T ss_dssp HHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTT------------------------------------TCCEEEESTTS
T ss_pred HHHHhCCeEEEEechHHHHHHHHHHHHHHhhcC------------------------------------CCeEEEEeCCC
Confidence 344567899999999998888877776654321 12388899999
Q ss_pred CHHHHHHHHHHhhcCCceEEEecc-cccccCCCCCceEEe
Q 000107 854 TVEEREVVETCYRKGLVRVLTATS-TLAAGVNLPARRVIF 892 (2191)
Q Consensus 854 s~~eR~~Ve~~Fr~G~ikVLVATs-tLa~GVNLPav~VVI 892 (2191)
+..++..+.+.+..|..+|+|+|. .+...+++....+||
T Consensus 691 ~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 691 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 999999999999999999999995 455568888876654
No 253
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.42 E-value=7.5 Score=47.14 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=18.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll 567 (2191)
.++++.||+|+|||+.+-. +...+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~-la~~l~ 61 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMA-LLESIF 61 (354)
T ss_dssp CCEEEECSTTSSHHHHHHT-HHHHHS
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHc
Confidence 3499999999999988643 334343
No 254
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=70.31 E-value=3.6 Score=49.60 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHH-hcCCEEEEEc
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLI-STGKMALLVL 577 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll-~~g~kaL~I~ 577 (2191)
++++++.||||+|||..+. ++...+. ..+..++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHHhcCCcEEEEE
Confidence 6899999999999998875 4445555 6677777654
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=69.55 E-value=7.2 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=18.4
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+...+.+++.||+|+|||+.+-
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3446899999999999998874
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=69.55 E-value=7.7 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=19.7
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..+++++++||+|+|||+++-.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHHHH
Confidence 45688999999999999988754
No 257
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=69.35 E-value=13 Score=47.89 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
.+.+++.+|+|+|||+.+-.
T Consensus 64 p~GvLL~GppGtGKTtLara 83 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARA 83 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45699999999999988743
No 258
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=68.27 E-value=3.6 Score=54.41 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=49.6
Q ss_pred HHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCC-CCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1217 KFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGL-RTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1217 ~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~-~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
++..||.|=+.++ +|.|+|+|..++.+||++|+ ++++||-.+..++|..+ .+++.+.|.+|+++
T Consensus 435 q~~~~l~hf~sr~---aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l------------~gfG~Ksa~nLl~a 499 (671)
T 2owo_A 435 QRKESLKHFVSRR---AMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL------------ERMGPKSAQNVVNA 499 (671)
T ss_dssp HHHHHHHHHHSTT---TTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTS------------TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh---hcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcc------------cccchhHHHHHHHH
Confidence 5566666655554 57899999999999999985 99999999988877654 35666777777764
No 259
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=67.80 E-value=6.6 Score=45.21 Aligned_cols=97 Identities=11% Similarity=0.009 Sum_probs=55.1
Q ss_pred HHHHHHHHhhccC--CccEEEech-HHHHHHHHhc----CcccccccCccccccccccccccccccccccCCCCccchHH
Q 000107 1584 QRWKRIGEIMEKR--DVRKFTWNM-KVQIQVLKHA----AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMC 1656 (2191)
Q Consensus 1584 ~~~~~L~~lLe~~--~v~kv~hNl-K~dl~vL~~~----gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~ 1656 (2191)
+.++.+..+|..- ....|+||+ .||+..|++. |+.... -..++||+
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~---------------------------~~~~iDt~ 150 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPR---------------------------DTVCLDTL 150 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCT---------------------------TCEEEEHH
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCC---------------------------CCEEEEHH
Confidence 4567777888753 256899999 9999988653 322110 01358998
Q ss_pred HHHHhcC---------CCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000107 1657 IVSWILW---------PDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLL 1726 (2191)
Q Consensus 1657 lAawLL~---------P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L 1726 (2191)
..++.+. |....++ |..++.++++.+. ...+.|..||.+|.+++..+.+.+
T Consensus 151 ~l~~~~~~~~~p~~~~p~~~~~~---L~~l~~~~~gi~~----------------~~~H~Al~Da~~ta~l~~~l~~~~ 210 (238)
T 1y97_A 151 PALRGLDRAHSHGTRARGRQGYS---LGSLFHRYFRAEP----------------SAAHSAEGDVHTLLLIFLHRAAEL 210 (238)
T ss_dssp HHHHHHHHHC----------CCS---HHHHHHHHHSSCC----------------C---CHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHhccCccccCCCCCCCC---HHHHHHHHhCCCC----------------ccCccHHHHHHHHHHHHHHHHHHH
Confidence 6555554 5444555 4444443343221 013457789999998887765443
No 260
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=66.40 E-value=12 Score=46.32 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=53.3
Q ss_pred hcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHH
Q 000107 777 QEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVE 856 (2191)
Q Consensus 777 ~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~ 856 (2191)
..+..+||.+|++.-+..++..+.++.. . ...+..+||+.+..
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~------------------------------------~~~v~~~~g~~~~~ 104 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD-E------------------------------------KVKIFGFYSSMKKE 104 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC-S------------------------------------SCCEEECCTTSCHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc-C------------------------------------CceEEEEECCCChh
Confidence 4678999999999988888877766432 1 12388899999999
Q ss_pred HHHHHHHHhhcCCceEEEeccc
Q 000107 857 EREVVETCYRKGLVRVLTATST 878 (2191)
Q Consensus 857 eR~~Ve~~Fr~G~ikVLVATst 878 (2191)
+|......+..|..+|+|+|+-
T Consensus 105 ~~~~~~~~l~~~~~~Iiv~Tp~ 126 (414)
T 3oiy_A 105 EKEKFEKSFEEDDYHILVFSTQ 126 (414)
T ss_dssp HHHHHHHHHHHTCCSEEEEEHH
T ss_pred hHHHHHHHhhcCCCCEEEECHH
Confidence 9999999999999999999974
No 261
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Probab=64.89 E-value=65 Score=44.03 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=69.4
Q ss_pred HHHHHHHhcCChHHHHHhc-----CCCchHHHHHHHHHcC---------CCC------CC----C---------------
Q 000107 1943 ELRLMAHFSKDPALIGLLS-----KPHGDVFTMIAARWTG---------RSE------DS----V--------------- 1983 (2191)
Q Consensus 1943 ELRilAhlS~D~~Li~af~-----~~g~Dih~~~Aa~~~g---------~~~------e~----V--------------- 1983 (2191)
=|-.+|.|.+|....+.-| . -.|||+.+|..+.. .+. +. +
T Consensus 542 GLQHyAALgrD~~ga~~VNL~psd~-PqDvYs~Va~~v~~~~~~da~~g~~~~~~~~~d~~~g~i~e~~~~~~~~l~~~~ 620 (883)
T 1msw_D 542 GIQHFSAMLRDEVGGRAVNLLPSET-VQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQW 620 (883)
T ss_dssp HHHHHHHHHTCTTHHHHTTCSCCSS-CCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHhcChhhhhHhCCCCCCC-CcchHHHHHHHHHHHHHHHHhcccccccccccccccccchhhcccchhHHHHHH
Confidence 3677888889988877765 3 37999999965532 110 00 0
Q ss_pred --ChhhhcccchhhhhhhcCCChhhhhhhcCCCH-----------------H----HHHHHHHHHHHhChh---HHHHHH
Q 000107 1984 --GSQERDQTKRLIYGILYGMGPNTLSEQLNCSS-----------------N----EAKEKIKSFKSSFPG---VASWLH 2037 (2191)
Q Consensus 1984 --t~~~R~~AK~i~fGiiYGmG~~~La~~l~is~-----------------~----eA~~~i~~f~~~yp~---v~~~~~ 2037 (2191)
..-.|...|+.+-=++||.+..|..+++.-.. . -|+.+.++..+.||+ |..|+.
T Consensus 621 l~~~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~~i~~ai~~~f~~a~~im~wL~ 700 (883)
T 1msw_D 621 LAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLK 700 (883)
T ss_dssp HTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HhcCCCHHHhccceeeeeeCCcchhhHHHHHHHHhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01269999999999999999999876542110 1 246677888889987 666777
Q ss_pred HHHHHHHh
Q 000107 2038 VAVSSCHQ 2045 (2191)
Q Consensus 2038 ~~~~~a~~ 2045 (2191)
++.+.+.+
T Consensus 701 ~~a~~i~~ 708 (883)
T 1msw_D 701 SAAKLLAA 708 (883)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 66665544
No 262
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=64.74 E-value=9.7 Score=45.85 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=34.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeE
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHV 601 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V 601 (2191)
.++.+++.+|+|+|||+.+...+. .+...+++++++. +++.-+.+... .++...|+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~-~l~~~g~kV~lv~~D~~r~~a~eqL~---~~~~~~gl~~ 162 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK-MFVDEGKSVVLAAADTFRAAAIEQLK---IWGERVGATV 162 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH-HHHHTTCCEEEEEECTTCHHHHHHHH---HHHHHHTCEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH-HHHhcCCEEEEEccccccHHHHHHHH---HHHHHcCCcE
Confidence 467889999999999987654332 2334566776654 45544443332 3333345544
No 263
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=62.39 E-value=8.4 Score=48.47 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=35.4
Q ss_pred hhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
|+-.|+|||+.-++.|.+.|++|+.||+.+++..|.+.+
T Consensus 235 pv~~l~GIG~~t~~~L~~lGI~TigdLa~~~~~~L~~~f 273 (420)
T 3osn_A 235 HIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKEL 273 (420)
T ss_dssp SGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHH
T ss_pred cHHHccCCCHHHHHHHHHhCCCcHHHHhhCCHHHHHHHh
Confidence 477899999999999999999999999999988877664
No 264
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=61.65 E-value=6.9 Score=49.22 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=23.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
.+..++++||||||||+..- .++..+....++++++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~-allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLY-AGLQELNSSERNILTV 201 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHH-HHHHHHCCTTSCEEEE
T ss_pred cCCeEEEECCCCCCHHHHHH-HHHhhcCCCCCEEEEe
Confidence 56789999999999998753 3344433334444443
No 265
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=61.64 E-value=6.6 Score=49.44 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=34.8
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICA 584 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~ 584 (2191)
...+++|.|+||||||... ..++..++..|..++|+=|-.++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHCCCcEEEEeCCCchhH
Confidence 4689999999999999874 4455566667888999889877753
No 266
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=60.99 E-value=7.3 Score=46.64 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=30.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEK 586 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~ 586 (2191)
.++.+++.+|+|+|||+.+...+.......|.+++++. |++..+.+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eq 152 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQ 152 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHH
Confidence 57899999999999998876544332223576776654 455444433
No 267
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=60.13 E-value=5.1 Score=51.78 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=24.9
Q ss_pred CCHHHHHhhhhcccccCCeEEEEcCCCCchhHHH
Q 000107 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVA 558 (2191)
Q Consensus 525 l~p~Q~eal~~~~il~gknlIi~APTGSGKTlva 558 (2191)
+.+.+.+-+.. .+..|.+++++||||||||+..
T Consensus 245 ~~~~~l~~l~~-~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 245 VPSGVLAYLWL-AIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp SCHHHHHHHHH-HHHTTCCEEEEESTTSSHHHHH
T ss_pred CCHHHHHHHHH-HHhCCCEEEEECCCCCCHHHHH
Confidence 45555555543 3567899999999999999875
No 268
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=60.11 E-value=7.5 Score=45.67 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=24.7
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEE
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLIST-GKMALL 575 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~ 575 (2191)
+..|..++++||||||||+..-+ ++..+... .+.+++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~-l~g~~~~~~~G~I~~ 59 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIAS-MIDYINQTKSYHIIT 59 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHH-HHHHHHHHCCCEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHH-HHHhCCCCCCCEEEE
Confidence 45788999999999999987543 33333323 444443
No 269
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=59.40 E-value=4.3 Score=42.93 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=19.0
Q ss_pred ccCCeEEEEcCCCCchhHHHHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael 560 (2191)
..+.++++.||+|+|||+++..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHH
Confidence 4678999999999999998753
No 270
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=58.97 E-value=8.3 Score=49.58 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=37.0
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
+|+-.|+|||+.-++.|...|++|+.||+.+++..|.+.+
T Consensus 315 LPV~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~f 354 (504)
T 3gqc_A 315 QLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEF 354 (504)
T ss_dssp SBGGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHH
T ss_pred CChhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhh
Confidence 6888999999999999999999999999999998887764
No 271
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=58.52 E-value=5.6 Score=43.64 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=18.8
Q ss_pred ccCCeEEEEcCCCCchhHHHHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael 560 (2191)
..|+-++++||+|+|||+.+-.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4678899999999999988654
No 272
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=58.35 E-value=6 Score=48.56 Aligned_cols=40 Identities=13% Similarity=0.276 Sum_probs=36.8
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
+|+-.|+|||+..++.|...|++|+.||+..++..|.+.+
T Consensus 178 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~f 217 (352)
T 1jx4_A 178 LDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMI 217 (352)
T ss_dssp SBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHHH
T ss_pred CCCCcccccCHHHHHHHHHcCCchHHHHHCCCHHHHHHhc
Confidence 5788999999999999999999999999999998887764
No 273
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=57.20 E-value=8.3 Score=36.94 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1239 VKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1239 v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
+...-.+.|-+|||.|+.||...+.++|.++ ++++.+....|.+
T Consensus 23 LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki------------~n~G~kSl~EI~~ 66 (79)
T 3gfk_B 23 LSVRSYNCLKRAGINTVQELANKTEEDMMKV------------RNLGRKSLEEVKA 66 (79)
T ss_dssp CBHHHHHHHHHTTCCBHHHHTTCCHHHHTTS------------TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCHHHHHhCCHHHHHHc------------CCCCHhHHHHHHH
Confidence 3444447899999999999999999999887 5566555444443
No 274
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=57.12 E-value=29 Score=42.02 Aligned_cols=127 Identities=8% Similarity=-0.018 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcC
Q 000107 764 DPDHIVELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLP 843 (2191)
Q Consensus 764 d~d~l~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~ 843 (2191)
+...+..++..+...++++|||+...+...- |..++...+
T Consensus 110 Kf~~L~~LL~~l~~~~~kVLIfsq~t~~LDi----lE~~l~~~~------------------------------------ 149 (328)
T 3hgt_A 110 KFSVLRDLINLVQEYETETAIVCRPGRTMDL----LEALLLGNK------------------------------------ 149 (328)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEEECSTHHHHH----HHHHHTTSS------------------------------------
T ss_pred cHHHHHHHHHHHHhCCCEEEEEECChhHHHH----HHHHHhcCC------------------------------------
Confidence 3445566676777788999999998775443 333332211
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcCCceEEEecccccccCCC-----CCceEEeecCCCCCcccCcccccccccccCCC-
Q 000107 844 SGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNL-----PARRVIFRQPRIGRDFIDGTRYRQMAGRAGRT- 917 (2191)
Q Consensus 844 ~GVa~hHagLs~~eR~~Ve~~Fr~G~ikVLVATstLa~GVNL-----Pav~VVI~~p~~g~~~is~~~y~QmiGRAGR~- 917 (2191)
+....+-|.....+++ -++....|.+.|+...-|+|+ -+..+||-+ ..+|=+....+|.+-|+-|.
T Consensus 150 ~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~---DsdwNp~~d~iQa~~r~~R~~ 221 (328)
T 3hgt_A 150 VHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICL---DTTVDTSQKDIQYLLQYKRER 221 (328)
T ss_dssp CEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEEC---STTCCTTSHHHHHHHCCC---
T ss_pred CceEeCCCCchhhhhh-----cccCCceEEEEECCCCCCcCcccccCCCCCEEEEE---CCCCCCCChHHHHHHHHhhhc
Confidence 1223333432222211 124455665556655556763 333333322 12222333346766666665
Q ss_pred -CCCCceEEEEEeChhhHHHHH
Q 000107 918 -GIDTKGESMLICKPEEVKKIM 938 (2191)
Q Consensus 918 -G~d~~Ge~ill~~~~e~~~~~ 938 (2191)
|..+.-.+|.+++..-.+...
T Consensus 222 ~gq~k~v~V~RLvt~~TiEh~~ 243 (328)
T 3hgt_A 222 KGLERYAPIVRLVAINSIDHCR 243 (328)
T ss_dssp ------CCEEEEEETTSHHHHH
T ss_pred cCCCCcceEEEEeCCCCHHHHH
Confidence 334566788888776555443
No 275
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=57.08 E-value=7.8 Score=50.56 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=48.9
Q ss_pred HHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCC-CCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1217 KFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGL-RTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1217 ~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~-~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
++..||.|=+.+. =|.|.|+|.....+||++|+ +++.||=..+.++|..+ .+++.+.|.+|+++
T Consensus 435 q~~~~l~hf~sr~---amdI~GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l------------~g~geKsa~nL~~a 499 (586)
T 4glx_A 435 QRKESLKHFVSRR---AMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL------------ERMGPKSAQNVVNA 499 (586)
T ss_dssp HHHHHHHHHHSTT---TTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTS------------TTCCHHHHHHHHHH
T ss_pred HHHhHHHhhhccc---cccCCCcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhcc------------cCccHHHHHHHHHH
Confidence 4445555444332 36899999999999999997 99999999999988765 45777777777664
No 276
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=56.99 E-value=11 Score=41.92 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHhcCcccccccCccccccccccccccccccccccCCCCccchHHHHH--H
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHAAVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVHLKDGIDMCIVS--W 1660 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~lAa--w 1660 (2191)
.+.+..+..++. +...|+||+.||+.+|+.. .+.. .++||+... +
T Consensus 71 ~~v~~~~~~~l~--~~~lV~hn~~fD~~~L~~~---~~~~----------------------------~~idt~~~~~~~ 117 (189)
T 1wlj_A 71 AVARLEILQLLK--GKLVVGHDLKHDFQALKED---MSGY----------------------------TIYDTSTDRLLW 117 (189)
T ss_dssp HHHHHHHHHHHT--TSEEEESSHHHHHHHTTCC---CTTC----------------------------EEEEGGGCHHHH
T ss_pred HHHHHHHHHHHC--CCEEEECCcHHHHHHHHHh---CCCC----------------------------ceechHhhhhhh
Confidence 456777888886 4678999999999998653 1110 246776321 1
Q ss_pred --hcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000107 1661 --ILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVS 1728 (2191)
Q Consensus 1661 --LL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~~L~~ 1728 (2191)
...|....++ |..++..+++.+.. .+ .....|..||.+|..|+..+...+..
T Consensus 118 ~~~~~p~~~~~~---L~~l~~~~lgi~~~-----~~--------~~~H~Al~Da~ata~l~~~l~~~~~~ 171 (189)
T 1wlj_A 118 REAKLDHCRRVS---LRVLSERLLHKSIQ-----NS--------LLGHSSVEDARATMELYQISQRIRAR 171 (189)
T ss_dssp HHHTC-----CC---HHHHHHHHTCCCCS-----CC--------TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCCCCCcc---HHHHHHHHcCCCCC-----CC--------CCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 1345444555 44444443443210 00 01245778999999998887766543
No 277
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=56.80 E-value=21 Score=34.56 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1235 TIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1235 ~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
+.||+..-=...|-++||+|+.|+..+++.+|.++.
T Consensus 8 ~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~ 43 (83)
T 2kz3_A 8 LCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKC 43 (83)
T ss_dssp SSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHh
Confidence 349999999999999999999999999999999986
No 278
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=56.61 E-value=8.9 Score=52.02 Aligned_cols=23 Identities=13% Similarity=0.450 Sum_probs=18.6
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+...+.+++.||+|+|||+.+-.
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAka 530 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKA 530 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHH
T ss_pred CCCCceEEEecCCCCCchHHHHH
Confidence 34467899999999999988743
No 279
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=56.50 E-value=55 Score=38.98 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=16.4
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
..++|.||.|+|||.....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~ 49 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKI 49 (357)
T ss_dssp SEEEEEESTTSSHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 5899999999999987653
No 280
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=55.82 E-value=6.2 Score=48.47 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=36.7
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
+|+-.|||||+..++.|...|++|+.||+.+++..|.+.+
T Consensus 179 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~f 218 (354)
T 3bq0_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKIT 218 (354)
T ss_dssp CBSTTSTTCCHHHHHHHTTTTCCBGGGGGGSCHHHHHHHH
T ss_pred CCcccccCcCHHHHHHHHHcCCccHHHHhcCCHHHHHHHH
Confidence 5788999999999999999999999999999998887764
No 281
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=55.74 E-value=4.6 Score=42.61 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=18.0
Q ss_pred ccCCeEEEEcCCCCchhHHHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvae 559 (2191)
..+.++++.||+|+|||.++.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHG
T ss_pred CCCCcEEEECCCCccHHHHHH
Confidence 356899999999999998764
No 282
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=55.59 E-value=15 Score=40.66 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhccCCccEEEechHHHHHHHHhc----CcccccccCccccccccccccccccccccccCC-CCccchHHH
Q 000107 1583 KQRWKRIGEIMEKRDVRKFTWNMKVQIQVLKHA----AVSIQRFGGLNLVGTSLGLENVGSSFLLLSPVH-LKDGIDMCI 1657 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~v~kv~hNlK~dl~vL~~~----gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dt~l 1657 (2191)
.+.+..+..++.+ ...|+||+.||+.+|.+. |+..+. +. ...++||+.
T Consensus 83 ~~v~~~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~p~-------------------------~~~~~~~iDt~~ 135 (194)
T 2gui_A 83 AEVADEFMDYIRG--AELVIHNAAFDIGFMDYEFSLLKRDIPK-------------------------TNTFCKVTDSLA 135 (194)
T ss_dssp HHHHHHHHHHHTT--SEEEETTHHHHHHHHHHHHHHTCSCCCC-------------------------GGGTSEEEEHHH
T ss_pred HHHHHHHHHHHCC--CeEEEEchHHhHHHHHHHHHHcCCCCcc-------------------------ccccCceeeHHH
Confidence 4566778888864 468999999999988652 332211 11 013689987
Q ss_pred HHHhcCCCCCCCCchhHHHHHHHhhChHHHHHhhccCchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Q 000107 1658 VSWILWPDDERSSNPNLEKEVKKRLSSEAAAAANRSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWK 1724 (2191)
Q Consensus 1658 AawLL~P~~~~~~l~~L~~~~~~~l~~e~~~~~~~~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L~~ 1724 (2191)
.+..+.|.. .++ |..++. +++.+. .++ ..+.|..||.+|.+++..+..
T Consensus 136 l~~~~~p~~-~~~---L~~l~~-~~gi~~------~~~--------~~H~Al~Da~~ta~l~~~l~~ 183 (194)
T 2gui_A 136 VARKMFPGK-RNS---LDALCA-RYEIDN------SKR--------TLHGALLDAQILAEVYLAMTG 183 (194)
T ss_dssp HHHHHSTTS-CCS---HHHHHH-HTTCCC------TTC--------SSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCC-CCC---HHHHHH-HcCcCC------CCC--------CCCChHHHHHHHHHHHHHHHh
Confidence 677777753 344 444433 233221 010 123567899999888876654
No 283
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=55.51 E-value=3.7 Score=54.30 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=46.8
Q ss_pred HHHHHHhccCchhhhhhcCCCCCCHHHHHHHHHcCC-CCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1217 KFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGL-RTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1217 ~~~~RL~~Gv~~ELl~L~~ip~v~~~RAR~Ly~aG~-~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
++..||.|=+.+ .+|.|+|+|...+++||++|+ +++.||-.+..++|..+ .+++.+.|.+|+++
T Consensus 430 q~~~~l~hf~sr---~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l------------~g~G~Ksa~nLl~a 494 (667)
T 1dgs_A 430 KRFEAIRHYASR---KAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGL------------ERMGEKSAQNLLRQ 494 (667)
T ss_dssp GHHHHHHHHHST---TSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTT------------SSCCSTTHHHHHHH
T ss_pred HHHHHHHHHhcc---cccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcc------------cccchhhHHHHHHH
Confidence 344444443333 458999999999999999975 99999999998877654 34555667777664
No 284
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=55.46 E-value=9.1 Score=47.34 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=25.7
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEEE
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLIST-GKMALLV 576 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~I 576 (2191)
+..|..++++||||||||+..-. ++..+... .++++++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~-l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIAS-MIDYINQTKSYHIITI 171 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHH-HHHHHHHHSCCEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHH-HHhhcCcCCCcEEEEe
Confidence 45688999999999999987543 33333333 4555544
No 285
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=54.79 E-value=3.6 Score=47.21 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=25.5
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIV 1267 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~ 1267 (2191)
+|+-.|||||+..++.|...|++|+.||+.+++..|.
T Consensus 184 lpv~~l~giG~~~~~~L~~~Gi~TigdL~~~~~~~L~ 220 (221)
T 1im4_A 184 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELE 220 (221)
T ss_dssp CBGGGSTTCCHHHHHHHHHTTCCBTTC----------
T ss_pred CCcccccCCCHHHHHHHHHcCCCcHHHHHCCCHHHhh
Confidence 5778999999999999999999999999999877664
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=54.46 E-value=7 Score=43.53 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=19.6
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~i 562 (2191)
+..++.++++||+|||||+++-...
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3457899999999999999986543
No 287
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=54.44 E-value=19 Score=45.40 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=31.0
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKA 587 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~ 587 (2191)
.++.+++++++|+|||+++..... .+...+++++++- +++..+.++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~-~l~~~g~~Vllvd~D~~r~aa~~qL 145 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL-YYKGKGRRPLLVAADTQRPAAREQL 145 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH-HHHTTTCCEEEEECCSSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHHcCCeEEEeeccccCchhHHHH
Confidence 466788899999999988754432 3344577776654 5555554433
No 288
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=54.39 E-value=18 Score=43.18 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=28.4
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICA 584 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~ 584 (2191)
.++.+.+.+++|+|||+.+..... .+...+++++++- +.+..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~-~~~~~~~~v~l~~~d~~~~~~~ 142 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL-YYKGKGRRPLLVAADTQRPAAR 142 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH-HHHHTTCCEEEEECCSSCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHHcCCeEEEecCCcccHhHH
Confidence 567888899999999987654332 2233566776653 3444443
No 289
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=54.12 E-value=7.1 Score=43.94 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.3
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.|+-++++||+|+|||+++-.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHH
Confidence 578899999999999998654
No 290
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=53.97 E-value=6.7 Score=43.00 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=19.8
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..|+.+++.||+|||||+++-+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHH
Confidence 55688999999999999998654
No 291
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=53.31 E-value=6.6 Score=47.84 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=17.0
Q ss_pred cCCeEEEEcCCCCchhHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvae 559 (2191)
.++.++|+||||+|||.++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34689999999999998874
No 292
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=53.25 E-value=6.1 Score=48.78 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=36.5
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
+|+-.|||||+..++.|...|++|+.||+.+++..|.+.+
T Consensus 179 lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~f 218 (362)
T 4f4y_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKIT 218 (362)
T ss_dssp CBSTTSTTCCSTTHHHHHHTTCCBGGGGTTSCHHHHHHHH
T ss_pred CChhhccCCCHHHHHHHHHcCCChHHHHhcCCHHHHHHHh
Confidence 5778999999999999999999999999999998877764
No 293
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=53.17 E-value=7.5 Score=42.42 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCchhHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~ 561 (2191)
.++++++||+|||||+++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 568999999999999998654
No 294
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=52.96 E-value=12 Score=45.98 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=24.5
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEEE
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLIST-GKMALLV 576 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~I 576 (2191)
..+..++++||||||||+..-. ++..+... ++.++.+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~-l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAA-MLDYLNNTKYHHILTI 158 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHH-HHHHHHHHCCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHH-HHhcccCCCCcEEEEc
Confidence 4567999999999999987533 34444333 4555443
No 295
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=51.40 E-value=19 Score=46.30 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKA 587 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~ 587 (2191)
...+++++++|+|||+.+.-.+. .+...|.+++++. |++..+.++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~-~l~~~G~kVllVd~D~~r~aa~~qL 148 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAY-YYQRKGWKTCLICADTFRAGAFDQL 148 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHH-HHHHTTCCEEEEEECCSSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHhCCCeEEEEeccccchhHHHHH
Confidence 35788999999999988764443 3444577777776 4555554433
No 296
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=50.59 E-value=8.9 Score=42.46 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=19.1
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..|..+++.||+|||||+++-+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999998754
No 297
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=49.82 E-value=9 Score=42.79 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.9
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..++.++++||+|||||+++-.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHH
Confidence 45788999999999999998754
No 298
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=49.68 E-value=3.5 Score=50.49 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred hhhcCCC--CCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHH
Q 000107 1231 VELTTIP--YVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKI 1299 (2191)
Q Consensus 1231 l~L~~ip--~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l 1299 (2191)
.+|-+|| ||+..-+.+|-+|||+|+++|+.+++.+|..+. +++...|.+|++.|++.
T Consensus 25 ~~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~------------~is~~~~~~~~~~a~~~ 83 (343)
T 1v5w_A 25 QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVK------------GLSEAKVDKIKEAANKL 83 (343)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CcHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhh------------CCCHHHHHHHHHHHHhh
Confidence 3677777 999999999999999999999999999998773 23344566666666544
No 299
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=49.67 E-value=9.6 Score=41.21 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
++.++++|++|||||+++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 56799999999999999854
No 300
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=49.52 E-value=6.8 Score=39.08 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=28.0
Q ss_pred hhhhhhcCCCCCCHHHHHHHHHc-CCCCHHHHHcC
Q 000107 1228 AEIVELTTIPYVKGSRARALYKA-GLRTPLAIAEA 1261 (2191)
Q Consensus 1228 ~ELl~L~~ip~v~~~RAR~Ly~a-G~~t~~~la~a 1261 (2191)
...-+|+.|||||..+|++..+. +|+|++||.+.
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V 57 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNI 57 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGC
T ss_pred CCHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhc
Confidence 34567889999999999888865 69999998764
No 301
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=49.28 E-value=43 Score=37.20 Aligned_cols=57 Identities=5% Similarity=-0.049 Sum_probs=43.2
Q ss_pred HHHHHhhhhcccc--cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHH
Q 000107 527 PWQVECLHVDGVL--QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAE 585 (2191)
Q Consensus 527 p~Q~eal~~~~il--~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q 585 (2191)
+.|..++.. ++ ..+-.+|.++-|++||......++......|+++.+++|+..-..+
T Consensus 37 ~~~~~a~~~--l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 37 AGYSDAVSV--LAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHH--HHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHH
T ss_pred ccchhHHHH--HhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHH
Confidence 578888876 44 4567889999999999875545555555689999999999665544
No 302
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=48.48 E-value=10 Score=41.26 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=20.0
Q ss_pred cccCCeEEEEcCCCCchhHHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~ 561 (2191)
+..+++++++|++|||||+++...
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHH
Confidence 446789999999999999987653
No 303
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=48.48 E-value=22 Score=50.13 Aligned_cols=82 Identities=10% Similarity=0.145 Sum_probs=59.3
Q ss_pred HHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCC
Q 000107 775 VVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLT 854 (2191)
Q Consensus 775 ~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs 854 (2191)
....+..+||.+|++.-|.+++..+.++. . .+..|+.+||+++
T Consensus 117 ~~~~~~~~Lil~PtreLa~Q~~~~l~~l~-~------------------------------------~~i~v~~l~Gg~~ 159 (1104)
T 4ddu_A 117 LARKGKKSALVFPTVTLVKQTLERLQKLA-D------------------------------------EKVKIFGFYSSMK 159 (1104)
T ss_dssp HHTTTCCEEEEESSHHHHHHHHHHHHTTS-C------------------------------------TTSCEEEECTTCC
T ss_pred HHhcCCeEEEEechHHHHHHHHHHHHHhh-C------------------------------------CCCeEEEEeCCCC
Confidence 34567899999999998887777765421 0 1123889999999
Q ss_pred HHHHHHHHHHhhcCCceEEEeccccc-c---cCCCCCceEE-ee
Q 000107 855 VEEREVVETCYRKGLVRVLTATSTLA-A---GVNLPARRVI-FR 893 (2191)
Q Consensus 855 ~~eR~~Ve~~Fr~G~ikVLVATstLa-~---GVNLPav~VV-I~ 893 (2191)
..+|....+.+..|..+|||+|+-.- . -+++..+.+| ||
T Consensus 160 ~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViD 203 (1104)
T 4ddu_A 160 KEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVD 203 (1104)
T ss_dssp TTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEES
T ss_pred HHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEe
Confidence 99999999999999999999997321 1 1345555544 44
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=48.18 E-value=10 Score=42.64 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.3
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
...|+-++++||+|+|||++.-.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHH
Confidence 35789999999999999987643
No 305
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=47.71 E-value=3.9 Score=53.42 Aligned_cols=50 Identities=26% Similarity=0.194 Sum_probs=0.0
Q ss_pred cCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHH
Q 000107 1234 TTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGA 1296 (2191)
Q Consensus 1234 ~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A 1296 (2191)
+.||+||..+|+.|.+. |.|++.|..|+.++|..+ ++++..+|.+|++-.
T Consensus 532 LGIp~VG~~~ak~La~~-Fgsle~L~~As~eeL~~I------------~GIG~~~A~sI~~ff 581 (615)
T 3sgi_A 532 LSIRHVGPTAARALATE-FGSLDAIAAASTDQLAAV------------EGVGPTIAAAVTEWF 581 (615)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhhC------------CCCCHHHHHHHHHHH
Confidence 58999999999999776 999999999999999887 578888999998754
No 306
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=47.62 E-value=22 Score=42.89 Aligned_cols=32 Identities=6% Similarity=0.092 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhccC--CccEEEec-hHHHHHHHHh
Q 000107 1583 KQRWKRIGEIMEKR--DVRKFTWN-MKVQIQVLKH 1614 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~--~v~kv~hN-lK~dl~vL~~ 1614 (2191)
.+.+..+..++.+. ....|+|| +.||+.+|++
T Consensus 102 ~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~ 136 (314)
T 3u3y_B 102 DNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQT 136 (314)
T ss_dssp HHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHH
Confidence 36677888888762 25789999 9999998865
No 307
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=47.47 E-value=16 Score=39.89 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=26.2
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
..+..+++.|+.|||||+++.... ..+...+..+.++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~-~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLA-DLLQKEGYRVEVL 47 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH-HHHHhcCCeEEEe
Confidence 357789999999999999886533 3333456666555
No 308
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=47.23 E-value=9.5 Score=46.03 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCCchhHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvae 559 (2191)
++-++|+||||+|||.++.
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 4568899999999998864
No 309
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=47.00 E-value=11 Score=41.78 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=18.7
Q ss_pred ccCCeEEEEcCCCCchhHHHHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael 560 (2191)
..|.-+.+.||+|||||+++-+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHH
Confidence 4678899999999999988654
No 310
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=46.79 E-value=8.8 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.4
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|+.++++||||||||+..-
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHHH
Confidence 5679999999999999998754
No 311
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=46.65 E-value=10 Score=40.42 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCchhHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~ 561 (2191)
..++++||+|||||+++...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999998754
No 312
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=46.49 E-value=9.3 Score=44.52 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=16.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~ 561 (2191)
.++++||||||||+++...
T Consensus 3 li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5789999999999987543
No 313
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=46.42 E-value=17 Score=45.12 Aligned_cols=42 Identities=31% Similarity=0.420 Sum_probs=31.6
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVS 581 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~ra 581 (2191)
..+.+++|.||||+|||+..-..+. .+...+.+++++=|..+
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~-~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLL-REYMQGSRVIIIDPERE 74 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHH-HHHTTTCCEEEEESSCC
T ss_pred cccCceEEEcCCCCCHHHHHHHHHH-HHHHCCCEEEEEeCCcC
Confidence 4678999999999999987655444 34456778888877644
No 314
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=46.30 E-value=13 Score=47.07 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=36.6
Q ss_pred hhhcCCCCCCHHHHHHHHH--cCCCCHHHHHcC-CHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYK--AGLRTPLAIAEA-SISEIVKAL 1270 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~--aG~~t~~~la~a-~~~~l~~~l 1270 (2191)
+|+-.|||||+..++.|.. .|++|+.||+.+ ++..|.+.+
T Consensus 241 lpv~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~~~~~~L~~~f 283 (434)
T 2aq4_A 241 FKLDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASV 283 (434)
T ss_dssp CCGGGSTTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHHH
T ss_pred CCcccccCcCHHHHHHHHHhcCCceEHHHHHhcCCHHHHHHHh
Confidence 5778999999999999999 999999999999 888888775
No 315
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=46.02 E-value=11 Score=41.23 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=18.9
Q ss_pred ccCCeEEEEcCCCCchhHHHHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael 560 (2191)
..+.+++++|++|||||+++-.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3578999999999999999754
No 316
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=45.94 E-value=27 Score=32.99 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1239 VKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1239 v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
+...-.+.|-++||.|+.||...+.++|.++ ++++.+....|.+
T Consensus 16 LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki------------~n~G~kSl~EI~~ 59 (73)
T 1z3e_B 16 LSVRSYNCLKRAGINTVQELANKTEEDMMKV------------RNLGRKSLEEVKA 59 (73)
T ss_dssp CBHHHHHHHHHTTCCBHHHHHTSCHHHHHTS------------TTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCcHHHHHcCCHHHHHHc------------CCCCHHHHHHHHH
Confidence 3333347789999999999999999999987 5676655544443
No 317
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=45.22 E-value=12 Score=44.76 Aligned_cols=23 Identities=13% Similarity=0.450 Sum_probs=19.6
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..++.+++.||+|+|||+.+-.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHH
Confidence 45678999999999999998754
No 318
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=45.06 E-value=11 Score=42.12 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=16.8
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.|+-++++||+|+|||+..-+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999988654
No 319
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=44.90 E-value=12 Score=43.43 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=18.2
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.+.++++.||+|+|||.++..
T Consensus 28 ~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHH
Confidence 468999999999999988753
No 320
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=44.84 E-value=25 Score=38.17 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchh
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~ 579 (2191)
.+++.|+.|||||+++... .+.+...|..+.++ |.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L-~~~l~~~g~~~~~~-~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKV-KEILDNQGINNKII-NY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHH-HHHHHTTTCCEEEE-EH
T ss_pred EEEEECCCCCCHHHHHHHH-HHHHHhcCceEEEE-EC
Confidence 5899999999999998653 33333345455555 54
No 321
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=44.68 E-value=12 Score=40.26 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
+..+++.||.|||||+++-+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56899999999999998754
No 322
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=44.50 E-value=9.2 Score=35.97 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=23.8
Q ss_pred hhhhcCCCCCCHHHHHHHHHc-CCCCHHHHHc
Q 000107 1230 IVELTTIPYVKGSRARALYKA-GLRTPLAIAE 1260 (2191)
Q Consensus 1230 Ll~L~~ip~v~~~RAR~Ly~a-G~~t~~~la~ 1260 (2191)
.-.|.+|||||..+|+++.+. +|.++++|.+
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~ 57 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEGRPYARVEDLLK 57 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGG
T ss_pred HHHHHhCCCCCHHHHHHHHHHcccCCHHHHHh
Confidence 345788999999999999987 5666666543
No 323
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=44.46 E-value=19 Score=39.94 Aligned_cols=34 Identities=18% Similarity=0.024 Sum_probs=24.4
Q ss_pred CCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHH
Q 000107 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 525 l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~ 561 (2191)
.+..+...+. ...|..+++.||+|||||+++-..
T Consensus 12 ~~~~~~~~~~---~~~g~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 12 VEKVDRQRLL---DQKGCVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp CCHHHHHHHH---TSCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHH
Confidence 4444544442 346889999999999999987553
No 324
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=44.43 E-value=19 Score=41.43 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
-++++.++.|+|||..+.-... .+...|.+++++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~-~l~~~G~~V~v~ 40 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAH-AQLRQGVRVMAG 40 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH-HHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHH-HHHHCCCCEEEE
Confidence 3799999999999998754443 444567666433
No 325
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=44.11 E-value=12 Score=41.17 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.4
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
++-+.+.||+|+|||++.-+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~ 20 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35688999999999988643
No 326
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=44.01 E-value=13 Score=40.55 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCCchhHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~ 561 (2191)
+..++++|++|||||+++...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 568999999999999987653
No 327
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=43.93 E-value=12 Score=39.90 Aligned_cols=19 Identities=26% Similarity=0.127 Sum_probs=16.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~ 561 (2191)
.++++||.|||||+++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999998653
No 328
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=43.93 E-value=12 Score=40.80 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.+..++++|+.|||||+++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4668999999999999988653
No 329
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=43.80 E-value=12 Score=42.29 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=17.3
Q ss_pred cCCeEEEEcCCCCchhHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvae 559 (2191)
.++-+++.+|||+|||..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 57889999999999997764
No 330
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=43.02 E-value=26 Score=41.26 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHhhhhcccccC-----CeEEEEcCCCCchhHHHH
Q 000107 511 SEICSIYKKRGISKLYPWQVECLHVDGVLQR-----RNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 511 ~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~g-----knlIi~APTGSGKTlvae 559 (2191)
..+.+.|+-.||+ +++....-. .++++ +.+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~-~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFL-GWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHH-HHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHH-HHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4688888877764 666433211 14433 359999999999998875
No 331
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=42.59 E-value=19 Score=40.74 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=26.7
Q ss_pred CHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHH
Q 000107 526 YPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 526 ~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~ 561 (2191)
+.-|..++.. +..|..+.+.+|.|||||+..-+.
T Consensus 9 ~~g~~~~l~~--i~~Ge~~~liG~nGsGKSTLl~~l 42 (208)
T 3b85_A 9 TLGQKHYVDA--IDTNTIVFGLGPAGSGKTYLAMAK 42 (208)
T ss_dssp SHHHHHHHHH--HHHCSEEEEECCTTSSTTHHHHHH
T ss_pred CHhHHHHHHh--ccCCCEEEEECCCCCCHHHHHHHH
Confidence 4446667765 778999999999999999876543
No 332
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=42.59 E-value=12 Score=45.17 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.5
Q ss_pred CeEEEEcCCCCchhHHHH
Q 000107 542 RNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 542 knlIi~APTGSGKTlvae 559 (2191)
+-++|+||||+|||..+.
T Consensus 11 ~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCccCHHHHHH
Confidence 468899999999998874
No 333
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=42.58 E-value=30 Score=38.62 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=31.3
Q ss_pred CCHHHHHhhhhcccccCCeEEEEcCCCCchhHHHHHHHHHHHH-hcCCEEEEEc
Q 000107 525 LYPWQVECLHVDGVLQRRNLVYCASTSAGKSFVAEILMLRRLI-STGKMALLVL 577 (2191)
Q Consensus 525 l~p~Q~eal~~~~il~gknlIi~APTGSGKTlvael~iL~~ll-~~g~kaL~I~ 577 (2191)
.++.+...+. +..+..+++.|++|||||+++-... +.+. ..|..++++-
T Consensus 12 ~~~~~r~~~~---~~~~~~i~~~G~~GsGKsT~~~~l~-~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 12 LTRSERTELR---NQRGLTIWLTGLSASGKSTLAVELE-HQLVRDRRVHAYRLD 61 (211)
T ss_dssp CCHHHHHHHH---TSSCEEEEEECSTTSSHHHHHHHHH-HHHHHHHCCCEEEEC
T ss_pred cCHHHhhccc---CCCCCEEEEECCCCCCHHHHHHHHH-HHhccccCCcEEEEC
Confidence 4455555543 4568899999999999999876432 2222 2354455553
No 334
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=42.41 E-value=24 Score=50.27 Aligned_cols=56 Identities=27% Similarity=0.283 Sum_probs=45.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcC-----------CEEEEEchhHHHHHHHHHHHHHHhhc
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTG-----------KMALLVLPYVSICAEKAEHLEVLLEP 596 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g-----------~kaL~I~P~raLA~q~~~~l~~l~~~ 596 (2191)
.| +.+|.|.-|||||.+...-+++.++..| .++|+|.=|++-|.|+.+++...+..
T Consensus 16 ~g-~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~~ 82 (1180)
T 1w36_B 16 QG-ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 (1180)
T ss_dssp SS-CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHHH
Confidence 34 4499999999999998888888887432 37999999999999999998776543
No 335
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=42.05 E-value=13 Score=42.37 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=41.4
Q ss_pred hcCCCCCCHHHHHHHHHc-CCCCHH-HHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHH
Q 000107 1233 LTTIPYVKGSRARALYKA-GLRTPL-AIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARK 1298 (2191)
Q Consensus 1233 L~~ip~v~~~RAR~Ly~a-G~~t~~-~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~ 1298 (2191)
|..|+|||+..|+++.+. |-.++. .|...+++.|.++ ++++.+.|.+|+.+-+.
T Consensus 90 L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~v------------pGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 90 LLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRV------------PGIGKRGAERMVLELRD 145 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTS------------TTCCHHHHHHHHHHHTT
T ss_pred hcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhC------------CCCCHHHHHHHHHHHHH
Confidence 567999999999999876 544444 4677788887776 67888889888876543
No 336
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=41.71 E-value=30 Score=35.09 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=35.9
Q ss_pred HHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Q 000107 1164 RLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQNRVS 1223 (2191)
Q Consensus 1164 dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~RL~ 1223 (2191)
+-+...++.+||++-+|++.. |++||+.||+..+..+-..|+.-+.
T Consensus 35 ~~~~~~si~elA~~~~vS~aT--------------v~Rf~kklG~~gf~efk~~l~~~~~ 80 (111)
T 2o3f_A 35 HXAIESTVNEISALANSSDAA--------------VIRLCXSLGLKGFQDLXMRVAGDLA 80 (111)
T ss_dssp HHHHTCCHHHHHHHTTCCHHH--------------HHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHCCCHHH--------------HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 455678999999999999644 8999999999888766555555443
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=41.59 E-value=12 Score=40.77 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.|..+++.|+.|||||+++-..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999998654
No 338
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=41.43 E-value=16 Score=43.17 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
.++++.||+|+|||+++-. +.+.+...+...+++
T Consensus 48 ~~~ll~G~~GtGKt~la~~-la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT-LAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH-HHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHH-HHHHHcCCCcceEEe
Confidence 5899999999999998753 333333333334443
No 339
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=41.39 E-value=15 Score=40.85 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.|+.+++.||.|||||+++-+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5789999999999999987643
No 340
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=41.34 E-value=14 Score=39.89 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=18.2
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.+..++++||.|||||+++-.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 467899999999999998765
No 341
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=41.29 E-value=11 Score=40.82 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.9
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..|.-+.+.||+|||||+.+-.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45788999999999999988764
No 342
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=41.28 E-value=20 Score=46.40 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=30.6
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.+..|..+.+.+|+|||||+.+-+.++.-+...+...+++.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 36689999999999999999887765555555344456664
No 343
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=41.09 E-value=12 Score=45.20 Aligned_cols=19 Identities=26% Similarity=0.280 Sum_probs=16.3
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
+.++++||||||||.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4789999999999988743
No 344
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=41.06 E-value=14 Score=41.78 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=18.5
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..|+-+.+.||+|+|||+..-+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKK 42 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999987644
No 345
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=40.85 E-value=28 Score=33.86 Aligned_cols=44 Identities=9% Similarity=0.103 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHH
Q 000107 1239 VKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKN 1294 (2191)
Q Consensus 1239 v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~ 1294 (2191)
+...-...|-+|||.|+.||...+.++|.++ ++++.+....|.+
T Consensus 19 LSvRa~NcLkragI~Tv~dL~~~se~dLlki------------~n~G~KSl~EI~~ 62 (86)
T 3k4g_A 19 LTVRSANCLXAEAIHYIGDLVQRTEVELLXT------------PNLGXXSLTEIXD 62 (86)
T ss_dssp CCHHHHHHHHHTTCCBHHHHHHSCHHHHHTS------------TTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCcHHHHHhCCHHHHhhc------------cccCcccHHHHHH
Confidence 3444457899999999999999999999987 5677655555544
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=39.60 E-value=27 Score=38.31 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
..+.+++++|||||+.... ++..+...|.++-++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~-L~~~l~~~g~~v~~i 38 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEK-WVAAAVREGWRVGTV 38 (169)
T ss_dssp CEEEEECCTTSSHHHHHHH-HHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCCHHHHHHH-HHHhhHhcCCeeeEE
Confidence 3578999999999987653 444554556554444
No 347
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=39.42 E-value=8e+02 Score=34.35 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=86.0
Q ss_pred EEEEeccchhHHHHHHHhcCChHHHHHhcC-C---CchHHHHHHHHHcCC---------CCCC--CChhhhcccchhhhh
Q 000107 1933 ILLAADYSQIELRLMAHFSKDPALIGLLSK-P---HGDVFTMIAARWTGR---------SEDS--VGSQERDQTKRLIYG 1997 (2191)
Q Consensus 1933 ~lvsaDySQIELRilAhlS~D~~Li~af~~-~---g~Dih~~~Aa~~~g~---------~~e~--Vt~~~R~~AK~i~fG 1997 (2191)
+-|.-|-|-==|-.+|.|.+|....+.-|= | -.|||+.+|..+..+ .... ...-.|+..|+.+-=
T Consensus 821 lPVhqDGSCNGLQHyAALgrD~~Ga~~VNL~psd~PqDvYs~Va~~V~~~~~~Da~~~~~~a~~l~~~I~RKvVKqtVMT 900 (1134)
T 3spa_A 821 LPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGMRVAQVLEGFITRKVVKQTVMT 900 (1134)
T ss_dssp CEEEECCSSHHHHHHHHHTTCHHHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHTTTCCCHHHHHHHHHH
T ss_pred CccccCCCCcHHHHHHHHccChhhHHHhCCCCCCCcccHHHHHHHHHHHHHHhhhhcChHHHHHhhCCCChhhcccceEE
Confidence 578888888888999999999999888761 1 379999998766421 0000 123469999999999
Q ss_pred hhcCCChhhhhhhcC--------CCHH--------HHHHHHHHHHHhChhH---HHHHHHHHHHHHhcC---eEEcccCC
Q 000107 1998 ILYGMGPNTLSEQLN--------CSSN--------EAKEKIKSFKSSFPGV---ASWLHVAVSSCHQKG---YVESLKGR 2055 (2191)
Q Consensus 1998 iiYGmG~~~La~~l~--------is~~--------eA~~~i~~f~~~yp~v---~~~~~~~~~~a~~~G---yV~Tl~GR 2055 (2191)
++||.+..|..+++. ++.+ -|+.+.++..+.||+. ..|+.++.+...+.+ .-.|++|-
T Consensus 901 ~vYGvT~~Gar~QI~~~L~e~~~~~~~~~~~~a~Yla~~i~~si~e~f~~a~~im~WL~~~A~~i~~~~~pV~WtTPlGl 980 (1134)
T 3spa_A 901 VVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGV 980 (1134)
T ss_dssp HHHCCSSSHHHHHHHHHHHTCTTSCTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCCEEECTTSC
T ss_pred eeecceehhHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 999999998876541 3322 2455667777788754 567777666655544 23677774
No 348
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=39.37 E-value=15 Score=40.86 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.9
Q ss_pred CeEEEEcCCCCchhHHH
Q 000107 542 RNLVYCASTSAGKSFVA 558 (2191)
Q Consensus 542 knlIi~APTGSGKTlva 558 (2191)
+-+|++||+|+|||.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999875
No 349
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=39.25 E-value=15 Score=41.22 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.8
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHH
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~i 562 (2191)
++..|.-+.+.+|+|+|||+.+...+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 57789999999999999998875543
No 350
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=39.16 E-value=15 Score=44.95 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.+.++++.||||+|||+++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 467999999999999998754
No 351
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=38.91 E-value=12 Score=42.49 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=15.8
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..|+-+.+.||+|||||+++-+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp EECCCEEEEECSCC----CHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 56789999999999999988644
No 352
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=38.58 E-value=25 Score=42.58 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=26.5
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
..++.+.+.+|+|+|||+.+...+. .+...+++++++-
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~-~l~~~g~kVllid 140 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN-YYAELGYKVLIAA 140 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH-HHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH-HHHHCCCeEEEEe
Confidence 3567899999999999987654332 2334577777663
No 353
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=38.58 E-value=17 Score=40.55 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=18.5
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..|+-+.+.||+|||||+.+-+
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~ 39 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRC 39 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 56789999999999999987643
No 354
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=38.57 E-value=15 Score=39.43 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=16.2
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
..++++|++|||||+++-.
T Consensus 3 ~~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 3689999999999998754
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=38.55 E-value=17 Score=39.75 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=19.3
Q ss_pred ccCCeEEEEcCCCCchhHHHHHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~ 561 (2191)
..+..+++.|++|||||+++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 35678999999999999998654
No 356
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=38.42 E-value=17 Score=38.97 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=17.9
Q ss_pred CeEEEEcCCCCchhHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~ 561 (2191)
+++++.++.|||||+++.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 69999999999999998654
No 357
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=38.06 E-value=16 Score=44.47 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=18.2
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.++++++.||+|+|||.++..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 457999999999999998754
No 358
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=38.03 E-value=51 Score=46.37 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEE
Q 000107 769 VELCDEVVQEGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAY 848 (2191)
Q Consensus 769 ~~Ll~e~~~~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~ 848 (2191)
..++......+..+||.+||+.-|.+++..+...+...+.. ....|+.
T Consensus 89 lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~--------------------------------~~~~v~~ 136 (1054)
T 1gku_B 89 LAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG--------------------------------TENLIGY 136 (1054)
T ss_dssp HHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCS--------------------------------GGGSEEE
T ss_pred HHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCC--------------------------------ccceEEE
Confidence 33444445567899999999999988888887665332110 0013888
Q ss_pred EcCCCCHHHHHHHHHHhhcCCceEEEecc
Q 000107 849 HHAGLTVEEREVVETCYRKGLVRVLTATS 877 (2191)
Q Consensus 849 hHagLs~~eR~~Ve~~Fr~G~ikVLVATs 877 (2191)
+||+.+..+|....+.++. .+|+|+|+
T Consensus 137 ~~Gg~~~~~~~~~~~~l~~--~~IlV~TP 163 (1054)
T 1gku_B 137 YHGRIPKREKENFMQNLRN--FKIVITTT 163 (1054)
T ss_dssp CCSSCCSHHHHHHHHSGGG--CSEEEEEH
T ss_pred EeCCCChhhHHHHHhhccC--CCEEEEcH
Confidence 9999999998888888877 89999997
No 359
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=37.76 E-value=17 Score=42.92 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
..++++.||+|+|||.++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999988754
No 360
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=37.57 E-value=11 Score=45.69 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=18.5
Q ss_pred cccCCeEEEEcCCCCchhHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVA 558 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlva 558 (2191)
+..|+.++++||||||||+..
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 457999999999999999864
No 361
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=37.56 E-value=19 Score=39.70 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.+..+++.|+.|||||+++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999998653
No 362
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=37.25 E-value=17 Score=39.55 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
+..+++.|++|||||+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45789999999999999865
No 363
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=37.13 E-value=16 Score=44.61 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
..++|+||||||||.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHH
Confidence 4689999999999988743
No 364
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=36.77 E-value=25 Score=42.29 Aligned_cols=37 Identities=16% Similarity=0.399 Sum_probs=25.6
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
+-.|+.+.|.||+|||||+..-+ ++ .++ .+.++..+|
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~l-L~-gl~--~G~I~~~v~ 159 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNS-LI-HFL--GGSVLSFAN 159 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHH-HH-HHH--TCEEECGGG
T ss_pred ecCCCEEEEECCCCCcHHHHHHH-Hh-hhc--CceEEEEec
Confidence 56799999999999999988654 22 333 455554333
No 365
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=36.75 E-value=18 Score=45.60 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=34.0
Q ss_pred hhhcCCCCCCHHHH-HHHHHcCCCCHHHHHcCCHHHHHHHH
Q 000107 1231 VELTTIPYVKGSRA-RALYKAGLRTPLAIAEASISEIVKAL 1270 (2191)
Q Consensus 1231 l~L~~ip~v~~~RA-R~Ly~aG~~t~~~la~a~~~~l~~~l 1270 (2191)
+|+-.|+|||+.-+ +.|...|++|+.||+.+++..|.+.+
T Consensus 253 lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~f 293 (435)
T 4ecq_A 253 MPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHF 293 (435)
T ss_dssp CBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHHH
T ss_pred CCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHHh
Confidence 57789999998765 55899999999999999998887664
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=36.54 E-value=30 Score=41.51 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=24.8
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.+..+.+.+|+|+|||+..-... ..+...++++++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La-gll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG-RYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH-HHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHH-HHHHhcCCEEEEEe
Confidence 46789999999999998765433 22233456665543
No 367
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=36.44 E-value=28 Score=41.63 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=26.2
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
+..|..+.+.||+|+|||+..-..+ ..+...++++++..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~La-g~l~~~~g~V~l~g 135 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLA-HRLKNEGTKVLMAA 135 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHH-HHHHHTTCCEEEEC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHH-HHHHHcCCeEEEEe
Confidence 3467899999999999998765432 22233566666653
No 368
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=36.35 E-value=19 Score=40.09 Aligned_cols=23 Identities=17% Similarity=0.067 Sum_probs=19.3
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..+..+.+.|++|||||+++.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHH
Confidence 45677899999999999998754
No 369
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=36.19 E-value=18 Score=39.01 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=17.1
Q ss_pred CeEEEEcCCCCchhHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~ 561 (2191)
+++++++|.|||||+++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 36899999999999998654
No 370
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=36.13 E-value=19 Score=41.07 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=20.4
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~i 562 (2191)
+...+.+++.||+||||++++....
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 4556789999999999999987643
No 371
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=36.12 E-value=16 Score=38.23 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=28.6
Q ss_pred hhhhhhcCCCCCCHHHHHHHHHc-CCCCHHHHHcC
Q 000107 1228 AEIVELTTIPYVKGSRARALYKA-GLRTPLAIAEA 1261 (2191)
Q Consensus 1228 ~ELl~L~~ip~v~~~RAR~Ly~a-G~~t~~~la~a 1261 (2191)
...-+|+++|||+...|.+..++ .|+|++||.+.
T Consensus 60 A~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V 94 (134)
T 1s5l_U 60 TNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNI 94 (134)
T ss_dssp SCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGC
T ss_pred cCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhC
Confidence 34567889999999999888876 69999999865
No 372
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=36.09 E-value=16 Score=40.00 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCchhHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~ 561 (2191)
|..+++.||+|||||+.+-..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 456889999999999987654
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=35.87 E-value=18 Score=40.36 Aligned_cols=19 Identities=37% Similarity=0.419 Sum_probs=16.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~ 561 (2191)
++++.||+|||||+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999998654
No 374
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=35.87 E-value=18 Score=40.41 Aligned_cols=19 Identities=37% Similarity=0.398 Sum_probs=16.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~ 561 (2191)
++++.||+|||||+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999998653
No 375
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=35.82 E-value=19 Score=39.95 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCCchhHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~ 561 (2191)
...++++|+.|||||+++-..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 357999999999999987653
No 376
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=35.66 E-value=29 Score=35.13 Aligned_cols=43 Identities=7% Similarity=0.121 Sum_probs=33.1
Q ss_pred HHhcCCCHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Q 000107 1164 RLVQETPVLEVCETFKVARGMVQALQENAGRFASMVSVFCERLGWYDLEGLIAKFQN 1220 (2191)
Q Consensus 1164 dli~e~~~~~i~~~y~v~rG~lq~l~~~a~~~a~~v~~fc~~lg~~~~~~ll~~~~~ 1220 (2191)
+.+...++.++|++-+|++.. |++||++||+..+..+-..|+.
T Consensus 31 ~~~~~~si~elA~~~~vS~aT--------------v~Rf~kkLGf~gf~efk~~l~~ 73 (107)
T 3iwf_A 31 HKVVNMTSQEIANQLETSSTS--------------IIRLSKKVTPGGFNELKTRLSK 73 (107)
T ss_dssp HHHTTCCHHHHHHHHTSCHHH--------------HHHHHHHHSTTHHHHHHHHHHT
T ss_pred HHHHHCCHHHHHHHHCCCHHH--------------HHHHHHHhCCCCHHHHHHHHHH
Confidence 456788999999999998643 8999999999887755444443
No 377
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=35.48 E-value=21 Score=40.73 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=18.6
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..|+-++++||+|+|||+..-+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 44689999999999999988654
No 378
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=35.24 E-value=18 Score=42.88 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=18.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.+..++++||+|||||+++-..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999987543
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=35.15 E-value=20 Score=40.58 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
....+++.|++|||||+++-..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999988543
No 380
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=34.81 E-value=21 Score=35.34 Aligned_cols=44 Identities=5% Similarity=0.083 Sum_probs=0.0
Q ss_pred hhcCCCCCCHHHHHHHHH-----cCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHH
Q 000107 1232 ELTTIPYVKGSRARALYK-----AGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNG 1295 (2191)
Q Consensus 1232 ~L~~ip~v~~~RAR~Ly~-----aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~ 1295 (2191)
+|..|||||..+|+++.+ ..|.+++||.+. ++++.+.+..|+..
T Consensus 41 ~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v--------------------~Gig~k~~~~l~~~ 89 (98)
T 2edu_A 41 DLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERV--------------------EGITGKQMESFLKA 89 (98)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGS--------------------TTCCHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhC--------------------CCCCHHHHHHHHHC
No 381
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=34.70 E-value=22 Score=40.07 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.+..+++.|+.|||||+++-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999998654
No 382
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=34.63 E-value=28 Score=42.73 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=47.9
Q ss_pred hcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1233 LTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1233 L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
|-.||.|+..-|+.|.+. |.|++.|.+|+.+||.++ .+++...|+.|.+.-+.+-
T Consensus 317 Ls~IPrl~~~iae~Lv~~-FGsLq~Il~AS~eEL~~V------------eGIGe~rAr~IregL~r~~ 371 (377)
T 3c1y_A 317 LKTVARIPLSIGYNVVRM-FKTLDQISKASVEDLKKV------------EGIGEKRARAISESISSLK 371 (377)
T ss_dssp HHHTSCCCHHHHHHHHHH-HCSHHHHTTCCHHHHTTS------------TTCCHHHHHHHHHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHhc------------cCccHHHHHHHHHHHHHHh
Confidence 346999999999999987 889999999999999887 6788899999998776663
No 383
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=34.33 E-value=21 Score=39.06 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.+..++++|++|||||+++-..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999998643
No 384
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=34.26 E-value=52 Score=37.49 Aligned_cols=47 Identities=19% Similarity=0.079 Sum_probs=36.2
Q ss_pred HHHHcCCCC------HHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHHH
Q 000107 1246 ALYKAGLRT------PLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVL 1301 (2191)
Q Consensus 1246 ~Ly~aG~~t------~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~~ 1301 (2191)
.|+++||-| +++|++++.++|..++... ++....|+.|++-|+.++.
T Consensus 54 ~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~---------G~~~~KA~~L~~~a~~i~~ 106 (218)
T 1pu6_A 54 NLKNAFILENDDEINLKKIAYIEFSKLAECVRPS---------GFYNQKAKRLIDLSGNILK 106 (218)
T ss_dssp HHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGG---------SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCccccccHHHHHhCCHHHHHHHHHHC---------CCcHHHHHHHHHHHHHHHH
Confidence 455558888 9999999999999988542 3445578888888887764
No 385
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=34.13 E-value=1.4e+02 Score=33.82 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=41.8
Q ss_pred CCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHH
Q 000107 779 GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEER 858 (2191)
Q Consensus 779 g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR 858 (2191)
+..+||.||++.-+..++..+.+..... ...+...+||.+..++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~------------------------------------~~~~~~~~g~~~~~~~ 145 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRAC------------------------------------RLKSTCIYGGAPKGPQ 145 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHT------------------------------------TCCEEEECTTSCHHHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhc------------------------------------CceEEEEECCCChHHH
Confidence 5679999999998888877776654322 1237778999887766
Q ss_pred HHHHHHhhcCCceEEEecc
Q 000107 859 EVVETCYRKGLVRVLTATS 877 (2191)
Q Consensus 859 ~~Ve~~Fr~G~ikVLVATs 877 (2191)
..... . ..+|+|+|+
T Consensus 146 ~~~~~---~-~~~I~v~Tp 160 (242)
T 3fe2_A 146 IRDLE---R-GVEICIATP 160 (242)
T ss_dssp HHHHH---H-CCSEEEECH
T ss_pred HHHhc---C-CCCEEEECH
Confidence 44433 2 368999996
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=34.08 E-value=23 Score=40.43 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=19.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~i 562 (2191)
.+.++++.|++|||||+++....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999986543
No 387
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=34.01 E-value=22 Score=38.69 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=17.1
Q ss_pred CeEEEEcCCCCchhHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~ 561 (2191)
..++++|++|||||+++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999998654
No 388
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=34.01 E-value=1.7e+02 Score=33.65 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=41.5
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.+.++||.+|++.-+...+..+.+.+... ...+...+|+....+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~------------------------------------~~~~~~~~g~~~~~~ 168 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHH------------------------------------VHTYGLIMGGSNRSA 168 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTC------------------------------------CSCEEEECSSSCHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhc------------------------------------CceEEEEECCCCHHH
Confidence 46789999999998888888776654321 122677888887655
Q ss_pred HHHHHHHhhcCCceEEEecc
Q 000107 858 REVVETCYRKGLVRVLTATS 877 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATs 877 (2191)
+.. .+..| .+|+|+|+
T Consensus 169 ~~~---~~~~~-~~Iiv~Tp 184 (262)
T 3ly5_A 169 EAQ---KLGNG-INIIVATP 184 (262)
T ss_dssp HHH---HHHHC-CSEEEECH
T ss_pred HHH---HhcCC-CCEEEEcH
Confidence 433 23334 78999995
No 389
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=33.99 E-value=21 Score=39.46 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.+..+++.|+.|||||+++...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4567999999999999998654
No 390
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=33.86 E-value=15 Score=40.67 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=26.0
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHH
Q 000107 544 LVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 590 (2191)
Q Consensus 544 lIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l 590 (2191)
++|.|++|||||..++.... . +.+++|+..-...-.+..+++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~----~-~~~~~yiaT~~~~d~e~~~rI 43 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG----D-APQVLYIATSQILDDEMAARI 43 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC----S-CSSEEEEECCCC------CHH
T ss_pred EEEECCCCCcHHHHHHHHHh----c-CCCeEEEecCCCCCHHHHHHH
Confidence 68999999999998875432 2 567889887444333333333
No 391
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=33.67 E-value=23 Score=39.12 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.+..+++.|++|||||+++-..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3567999999999999998654
No 392
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=33.60 E-value=19 Score=44.97 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.3
Q ss_pred CeEEEEcCCCCchhHHHH
Q 000107 542 RNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 542 knlIi~APTGSGKTlvae 559 (2191)
+.++|+||||+|||.++.
T Consensus 3 ~~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEEECSSSSHHHHHH
T ss_pred cEEEEECcchhhHHHHHH
Confidence 357899999999998764
No 393
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=33.60 E-value=22 Score=40.35 Aligned_cols=50 Identities=20% Similarity=0.491 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHHhhhhccccc----CCeEEEEcCCCCchhHHHHHHHHHH
Q 000107 511 SEICSIYKKRGISKLYPWQVECLHVDGVLQ----RRNLVYCASTSAGKSFVAEILMLRR 565 (2191)
Q Consensus 511 ~~l~~~l~~~Gi~~l~p~Q~eal~~~~il~----gknlIi~APTGSGKTlvael~iL~~ 565 (2191)
..+.+.|+-.|+. +-.+ ...+.. ++. .+.+++.||+|+|||..+ .++.+.
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~--~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKS--FLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHH--HHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHH--HHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 5666777655542 2222 222322 222 346999999999999887 444443
No 394
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=33.44 E-value=73 Score=35.18 Aligned_cols=71 Identities=14% Similarity=0.055 Sum_probs=49.7
Q ss_pred hcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCC
Q 000107 568 STGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGR 639 (2191)
Q Consensus 568 ~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~ 639 (2191)
..+.++||.++++.-+...++.|... |+.+..++|+..... .....+|+|||. .+. ....
T Consensus 52 ~~~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~---~Gld 119 (191)
T 2p6n_A 52 KTPPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS---KGLD 119 (191)
T ss_dssp TSCSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH---TTCC
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh---cCCC
Confidence 35678999999999988888777653 788888998754311 123578999993 222 2346
Q ss_pred CCccceEEEcc
Q 000107 640 LSEIGIIVIDE 650 (2191)
Q Consensus 640 L~~l~lVVIDE 650 (2191)
+..+++||.=+
T Consensus 120 i~~v~~VI~~d 130 (191)
T 2p6n_A 120 FPAIQHVINYD 130 (191)
T ss_dssp CCCCSEEEESS
T ss_pred cccCCEEEEeC
Confidence 77888888733
No 395
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=33.20 E-value=22 Score=40.02 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCCchhHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~ 561 (2191)
...+++.||+|||||+++-..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999998654
No 396
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=33.08 E-value=22 Score=39.78 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=17.3
Q ss_pred cCCeEEEEcCCCCchhHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvae 559 (2191)
.|..+.|.||+|||||+.+-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 57788999999999998764
No 397
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=33.00 E-value=45 Score=42.68 Aligned_cols=52 Identities=8% Similarity=0.079 Sum_probs=41.7
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhh
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLE 595 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~ 595 (2191)
.+....+.+-||||||++..-.+ + ..++.+|+|+|....|.+.+..|+.++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~---~~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-E---RHAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-H---HSSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-H---HhCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 46788999999999998743322 2 2466799999999999999999988754
No 398
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=32.97 E-value=22 Score=40.12 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=17.0
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~i 562 (2191)
.+++.||+||||++++....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999987643
No 399
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=32.77 E-value=38 Score=36.90 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEE
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALL 575 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll~~g~kaL~ 575 (2191)
-+++.|+.|||||+++... .+.+...|..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L-~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLL-AQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH-HHHHHHCCC-EEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHHHHHCCCeEEE
Confidence 3789999999999998653 3333334555543
No 400
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=32.72 E-value=36 Score=37.74 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=23.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
.+.-+.+.||+|||||+.+-... ..+...+..++++
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~-~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLS-QTLREQGISVCVF 56 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH-HHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHhhcCCeEEEe
Confidence 46779999999999999875432 2222234444443
No 401
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=32.60 E-value=24 Score=39.10 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.5
Q ss_pred ccCCeEEEEcCCCCchhHHHHHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~ 561 (2191)
..+..+++.|+.|||||+++...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHH
Confidence 35778999999999999998654
No 402
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=32.54 E-value=23 Score=37.88 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCchhHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~ 561 (2191)
+.+++.|++|||||+++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999998653
No 403
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=32.53 E-value=23 Score=44.89 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=18.7
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
...++++++.||+|+|||+.+.
T Consensus 60 ~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 60 KMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CCTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCeEEEECCCcCCHHHHHH
Confidence 3456799999999999998875
No 404
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=32.53 E-value=36 Score=39.56 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
...++++|++|||||+++.... +.+...|..++++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La-~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLA-KILSKNNIDVIVL 38 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHH-HHHHhCCCEEEEE
Confidence 4578999999999999876532 2333345444444
No 405
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=32.33 E-value=34 Score=38.13 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhccCC-----ccEEEechHHHHH-HHHh
Q 000107 1583 KQRWKRIGEIMEKRD-----VRKFTWNMKVQIQ-VLKH 1614 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~-----v~kv~hNlK~dl~-vL~~ 1614 (2191)
.+.+..+..++.+.. ...++||+.||+. +|++
T Consensus 86 ~~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~ 123 (204)
T 1w0h_A 86 PQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNI 123 (204)
T ss_dssp HHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHH
Confidence 456677777876532 3479999999995 7764
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=32.30 E-value=23 Score=41.31 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.|+.+++.|++|||||+++-+.
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3999999999999999997654
No 407
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=32.12 E-value=23 Score=38.41 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=17.1
Q ss_pred CeEEEEcCCCCchhHHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~ 561 (2191)
..+++.|++|||||+++...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999987653
No 408
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=32.11 E-value=24 Score=39.61 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCchhHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~ 561 (2191)
+..+.+.||+|||||+++-+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 357899999999999987653
No 409
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=31.99 E-value=19 Score=46.31 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.0
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..+.++++.||+|+|||..+..
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHH
T ss_pred HhcCCeeEeecCchHHHHHHHHH
Confidence 56789999999999999988753
No 410
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=31.98 E-value=20 Score=42.98 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=18.2
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.+.++++.||||+|||+++-.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHH
Confidence 568999999999999988753
No 411
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=31.93 E-value=36 Score=42.89 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhc-CCEEEEEc--hhHHHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLIST-GKMALLVL--PYVSICAEKA 587 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~-g~kaL~I~--P~raLA~q~~ 587 (2191)
.+.+++++++|+|||+++.-.+. .+... |.+++++. |++..+.+..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~-~l~~~~G~kVllvd~D~~r~~a~~ql 148 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGK-FLREKHKKKVLVVSADVYRPAAIKQL 148 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH-HHHHTSCCCEEEEECCCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHHhcCCeEEEEecCCCCccHHHHH
Confidence 46788899999999998765443 34445 78887765 6666555543
No 412
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=31.92 E-value=25 Score=38.94 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=23.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEE
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMAL 574 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL 574 (2191)
.+..+++.|+.|||||+++.... +.+...+..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~-~~l~~~~~~v~ 41 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV-EALCAAGHRAE 41 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH-HHHHHTTCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHH-HHHHHcCCcEE
Confidence 46789999999999999986543 33333344443
No 413
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=31.89 E-value=24 Score=38.17 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.|..+++.|+.|||||+++-+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467899999999999998754
No 414
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=31.88 E-value=36 Score=41.80 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=26.1
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
+..|..+.+.||+|+|||+..-... ..+...++++++..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~La-g~l~~~~G~V~l~g 192 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLA-HRLKNEGTKVLMAA 192 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHH-HHHHHTTCCEEEEC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHH-hhccccCCEEEEec
Confidence 3467889999999999998765432 22233466666553
No 415
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=31.75 E-value=36 Score=39.92 Aligned_cols=41 Identities=7% Similarity=0.009 Sum_probs=29.6
Q ss_pred cccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 536 DGVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 536 ~~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.++..|..+++.+.+|+|||+.+...+... ..+|-+++|+.
T Consensus 16 GGl~~gs~~li~g~p~~~~~~l~~qfl~~g-~~~Ge~~~~~~ 56 (260)
T 3bs4_A 16 KIKKHSLILIHEEDASSRGKDILFYILSRK-LKSDNLVGMFS 56 (260)
T ss_dssp CBCTTCEEEEEECSGGGCHHHHHHHHHHHH-HHTTCEEEEEE
T ss_pred CCCCCCcEEEEEeCCCccHHHHHHHHHHHH-HHCCCcEEEEE
Confidence 456778999999888888885554444444 45688888876
No 416
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=31.68 E-value=36 Score=41.26 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=25.1
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
..|..+.+.||+|+|||+..-... ..+...++++++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~La-g~l~~~~g~V~l~ 163 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLA-NWLKNHGFSVVIA 163 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH-HHHHhcCCEEEEE
Confidence 357889999999999998754433 2233355666554
No 417
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=31.50 E-value=1.2e+02 Score=37.74 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=22.3
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLI 567 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll 567 (2191)
+-.|+.+.|.+|+|+|||..+-+ +.+.+.
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~-Iar~i~ 199 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQN-IAQSIA 199 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHH-HHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHH-HHHHHh
Confidence 45799999999999999988754 334333
No 418
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=31.41 E-value=24 Score=39.20 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=17.5
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.+..+.+.||+|||||+++-+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQA 25 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHH
Confidence 466788999999999998654
No 419
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=31.40 E-value=15 Score=42.65 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=18.2
Q ss_pred ccCCeEEEEcCCCCchhHHHHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael 560 (2191)
...+.+++.||+|+|||+.+..
T Consensus 42 ~~~~~vll~G~~GtGKT~la~~ 63 (268)
T 2r62_A 42 KIPKGVLLVGPPGTGKTLLAKA 63 (268)
T ss_dssp CCCSCCCCBCSSCSSHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHH
Confidence 3456799999999999998754
No 420
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=31.26 E-value=26 Score=40.36 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
.+.+++.||+|+|||+.+-.
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARA 68 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45599999999999988653
No 421
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=31.25 E-value=27 Score=44.10 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=49.8
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCce
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTSV 619 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~I 619 (2191)
.++++++++|+|||+.+.-... .+...|.+++++. |++..+.+.. +.+....|+.+....+ .. .+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~-~l~~~G~kVllv~~D~~r~~a~~qL---~~~~~~~gv~v~~~~~-~~-----~d--- 166 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR-YIQKRGLKPALIAADTYRPAAYEQL---KQLAEKIHVPIYGDET-RT-----KS--- 166 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH-HHHHHHCCEEEECCSCCCTTGGGSS---HHHHHHSSCCEECCSS-SC-----CS---
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHHcCCeEEEEeccccCchHHHHH---HHhhhccCcceEecCC-CC-----CC---
Confidence 5899999999999988754433 3334577777765 4444333322 2223334555432111 00 01
Q ss_pred EEEch-HHHHHHHHHhhhcCCCCccceEEEccccccc
Q 000107 620 AVCTI-EKANSLVNRMLEEGRLSEIGIIVIDELHMVA 655 (2191)
Q Consensus 620 iV~Tp-Ekl~~Ll~~l~~~~~L~~l~lVVIDEaH~l~ 655 (2191)
| +.+...+.. +..+++||||.+-.+.
T Consensus 167 ----p~~i~~~~l~~------~~~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 167 ----PVDIVKEGMEK------FKKADVLIIDTAGRHK 193 (432)
T ss_dssp ----SSTTHHHHHHT------TSSCSEEEEECCCSCS
T ss_pred ----HHHHHHHHHHH------hhCCCEEEEcCCCCcc
Confidence 1 111222322 2678999999997653
No 422
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=31.07 E-value=19 Score=43.18 Aligned_cols=23 Identities=4% Similarity=0.115 Sum_probs=19.6
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..+.++++.||+|+|||..+..
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHH
T ss_pred HHcCCeEEEECCCCCcHHHHHHH
Confidence 45688999999999999988753
No 423
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=30.81 E-value=22 Score=38.37 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=14.1
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.+..+++.|+.|||||+++...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp -CCEEEEECCC----CHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3567999999999999998653
No 424
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=30.74 E-value=35 Score=44.06 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=31.3
Q ss_pred ccccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEchh
Q 000107 537 GVLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPY 579 (2191)
Q Consensus 537 ~il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P~ 579 (2191)
++..|..+++.+|+|+|||+.+...+-. ....|.+++|+.+-
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~-~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVEN-ACANKERAILFAYE 318 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHH-HHTTTCCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH-HHhCCCCEEEEEEe
Confidence 5778999999999999999887654432 33356677777654
No 425
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=30.69 E-value=38 Score=38.72 Aligned_cols=36 Identities=14% Similarity=0.320 Sum_probs=24.9
Q ss_pred CeEEEEcC-CCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 542 RNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 542 knlIi~AP-TGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
+.++|.+. ||+|||++.. .+++.+.++|.++.+.=|
T Consensus 5 k~i~Itgt~t~vGKT~vt~-~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 5 KKFFIIGTDTEVGKTYIST-KLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEEEESSSSSCHHHHHH-HHHHHHHHTTCCEEEECS
T ss_pred cEEEEEeCCCCCCHHHHHH-HHHHHHHHCCCeeEEecc
Confidence 34555554 9999999874 455666677888777544
No 426
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=30.55 E-value=25 Score=40.45 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=19.2
Q ss_pred cCCeEEEEcCCCCchhHHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~i 562 (2191)
.+..+++.||.|||||+++....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999986543
No 427
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=30.19 E-value=27 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.2
Q ss_pred eEEEEcCCCCchhHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~ 561 (2191)
.+++.|++|||||+++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 5789999999999987643
No 428
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=30.13 E-value=28 Score=37.06 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.4
Q ss_pred eEEEEcCCCCchhHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~ 561 (2191)
.+++.|+.|||||+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999998653
No 429
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=30.12 E-value=2.5e+02 Score=31.93 Aligned_cols=59 Identities=10% Similarity=0.060 Sum_probs=40.6
Q ss_pred CCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHH
Q 000107 779 GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEER 858 (2191)
Q Consensus 779 g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR 858 (2191)
+..+||.+|++.-+..++..+.+..... ...+..++|+....++
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~------------------------------------~~~~~~~~g~~~~~~~ 154 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSI------------------------------------GVQSAVIVGGIDSMSQ 154 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGG------------------------------------TCCEEEECTTSCHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccC------------------------------------CeeEEEEECCCChHHH
Confidence 3579999999998888887776544321 1237778999886654
Q ss_pred HHHHHHhhcCCceEEEecc
Q 000107 859 EVVETCYRKGLVRVLTATS 877 (2191)
Q Consensus 859 ~~Ve~~Fr~G~ikVLVATs 877 (2191)
.... .+..+|+|+|+
T Consensus 155 ~~~~----~~~~~I~v~Tp 169 (249)
T 3ber_A 155 SLAL----AKKPHIIIATP 169 (249)
T ss_dssp HHHH----HTCCSEEEECH
T ss_pred HHHh----cCCCCEEEECH
Confidence 4332 23568999996
No 430
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=30.07 E-value=26 Score=39.26 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=16.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~ 561 (2191)
++++.|++|||||+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999998654
No 431
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=29.77 E-value=40 Score=43.12 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=26.3
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
+..|..+.+.||+|+|||+..-..+ ..+...++++++.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LA-gll~~~~G~V~l~ 327 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLA-RQFEQQGKSVMLA 327 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHH-HHhhhcCCeEEEe
Confidence 3457889999999999998765432 2333456677665
No 432
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=29.76 E-value=49 Score=37.13 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=30.2
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 540 QRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
+..++++..++|.|||.++.-..++.+ ..|.+++|+.=
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~vQF 64 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVVQF 64 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEEES
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEe
Confidence 356899999999999999977667655 46888988853
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=29.71 E-value=29 Score=39.07 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.+..+++.|++|||||+++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 3567999999999999998654
No 434
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=29.57 E-value=50 Score=41.91 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=31.5
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHH
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEASISEIVK 1268 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a~~~~l~~ 1268 (2191)
+|+-.|+|||+.-++.|...|++|+.||+.. +..|.+
T Consensus 282 lpv~~l~GiG~~~~~~L~~lGI~T~gdL~~~-~~~L~~ 318 (459)
T 1t94_A 282 LPIRKVSGIGKVTEKMLKALGIITCTELYQQ-RALLSL 318 (459)
T ss_dssp CBGGGCTTSCHHHHHHHHHTTCCBHHHHHHT-HHHHHH
T ss_pred CCHHhcCCcCHHHHHHHHHcCCCcHHHHHhh-HHHHHH
Confidence 4778999999999999999999999999986 444443
No 435
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=29.05 E-value=40 Score=40.25 Aligned_cols=92 Identities=17% Similarity=0.132 Sum_probs=50.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc--hhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCCCCCCc
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL--PYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSLPKDTS 618 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~--P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l~~~~~ 618 (2191)
++.+++++++|+|||+.+..... .+...+++++++- +++..+.++...+ ....|+.+.. +.. .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~-~~~~~g~~v~l~~~D~~r~~a~~ql~~~---~~~~~v~v~~--~~~-----~---- 162 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY-FYKKKGFKVGLVGADVYRPAALEQLQQL---GQQIGVPVYG--EPG-----E---- 162 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH-HHHHTTCCEEEEECCCSSSHHHHHHHHH---HHHHTCCEEC--CTT-----C----
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHHCCCeEEEEecCCCCHHHHHHHHHH---hccCCeEEEe--cCC-----C----
Confidence 67888999999999987754433 2334577776654 4555555444333 3334554421 110 0
Q ss_pred eEEEchHHH-HHHHHHhhhcCCCCccceEEEcccccc
Q 000107 619 VAVCTIEKA-NSLVNRMLEEGRLSEIGIIVIDELHMV 654 (2191)
Q Consensus 619 IiV~TpEkl-~~Ll~~l~~~~~L~~l~lVVIDEaH~l 654 (2191)
..|..+ ...+..+ ...++++||||=.-.+
T Consensus 163 ---~~p~~~~~~~l~~~----~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 163 ---KDVVGIAKRGVEKF----LSEKMEIIIVDTAGRH 192 (297)
T ss_dssp ---CCHHHHHHHHHHHH----HHTTCSEEEEECCCSC
T ss_pred ---CCHHHHHHHHHHHH----HhCCCCEEEEeCCCCc
Confidence 123332 2233332 1146799999987554
No 436
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=28.95 E-value=29 Score=38.32 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
...++++|+.|||||+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35789999999999998754
No 437
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=28.29 E-value=38 Score=39.82 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=16.2
Q ss_pred CCeEEEEcCCCCchhHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvae 559 (2191)
.+.+++.||+|+|||+.+-
T Consensus 44 ~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4559999999999998764
No 438
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=28.14 E-value=30 Score=37.97 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCchhHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~ 561 (2191)
...+.+.+++|||||+++.+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 356889999999999998653
No 439
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=28.02 E-value=30 Score=38.16 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.8
Q ss_pred eEEEEcCCCCchhHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael 560 (2191)
.+.+.|+.|||||+++-+
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 688999999999998754
No 440
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=27.97 E-value=32 Score=37.39 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEE
Q 000107 543 NLVYCASTSAGKSFVAEILMLRRLISTGKMALL 575 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~iL~~ll~~g~kaL~ 575 (2191)
.+++.|+.|||||+++.... +.+...|..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~-~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLY-EYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHH-HHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHCCCeEEE
Confidence 57899999999999986532 333223444443
No 441
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=27.93 E-value=23 Score=39.41 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=15.6
Q ss_pred eEEEEcCCCCchhHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael 560 (2191)
-+++.|+.|||||+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~ 19 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEK 19 (214)
T ss_dssp EEEEEEEEEEEHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999998765
No 442
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=27.71 E-value=36 Score=36.82 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
.-.+|.+|+|+|||.+...
T Consensus 27 g~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp SEEEEEECTTSSHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 3778999999999988754
No 443
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=27.65 E-value=50 Score=36.16 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHHHhcCCE
Q 000107 542 RNLVYCASTSAGKSFVAEILMLRRLISTGKM 572 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael~iL~~ll~~g~k 572 (2191)
.-++++|++|+|||+.... ++..+...+.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~-l~~~l~~~g~~ 36 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKK-LIPALCARGIR 36 (174)
T ss_dssp CEEEEECCTTSCHHHHHHH-HHHHHHHTTCC
T ss_pred eEEEEEeCCCCCHHHHHHH-HHHhccccCCc
Confidence 4688999999999987543 33444444443
No 444
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=27.55 E-value=32 Score=39.77 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=18.7
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
.+..+.+.||+|||||+++-+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5678999999999999987543
No 445
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=27.13 E-value=49 Score=42.68 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=28.7
Q ss_pred hhhcCCCCCCHHHHHHHHHcCCCCHHHHHcC
Q 000107 1231 VELTTIPYVKGSRARALYKAGLRTPLAIAEA 1261 (2191)
Q Consensus 1231 l~L~~ip~v~~~RAR~Ly~aG~~t~~~la~a 1261 (2191)
+|+-.|||||+..++.|-..|++|+.||+..
T Consensus 338 LPV~kl~GIG~~t~~~L~~lGI~TigDL~~~ 368 (517)
T 3pzp_A 338 LPIRKVSGIGKVTEKMLKALGIITCTELYQQ 368 (517)
T ss_dssp CBGGGSTTCCHHHHHHHHHTTCCBHHHHHHH
T ss_pred CChhhhccccHHHHHHHHHhCCCcHHHHHhh
Confidence 5778899999999999999999999999975
No 446
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=27.08 E-value=85 Score=38.47 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=22.9
Q ss_pred CeEEE-EcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 542 RNLVY-CASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 542 knlIi-~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
+.+.+ ++.-|.|||+++.-.... +...|.++++|=
T Consensus 144 kvIav~s~KGGvGKTT~a~nLA~~-La~~g~rVlliD 179 (373)
T 3fkq_A 144 SVVIFTSPCGGVGTSTVAAACAIA-HANMGKKVFYLN 179 (373)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHH-HHHHTCCEEEEE
T ss_pred eEEEEECCCCCChHHHHHHHHHHH-HHhCCCCEEEEE
Confidence 44444 457789999988654433 334588888874
No 447
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=26.99 E-value=79 Score=34.32 Aligned_cols=46 Identities=11% Similarity=-0.021 Sum_probs=33.2
Q ss_pred HHHHHcCCCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHH
Q 000107 1245 RALYKAGLRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIV 1300 (2191)
Q Consensus 1245 R~Ly~aG~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~ 1300 (2191)
..|++. |-|+++||+|+.++|.+++... ++....|+.|++-|+..+
T Consensus 54 ~~l~~~-~pt~~~la~a~~~el~~~i~~l---------G~y~~KAk~i~~~a~~~v 99 (161)
T 4e9f_A 54 WKFLEK-YPSAEVARTADWRDVSELLKPL---------GLYDLRAKTIVKFSDEYL 99 (161)
T ss_dssp HHHHHH-SCSHHHHTTSCHHHHHHHHGGG---------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCHHHHhccChHhHHhHhhhc---------CCHHHHHHHHHHHhCCcC
Confidence 344544 6899999999999999998542 233456888887776554
No 448
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=26.77 E-value=31 Score=41.76 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
.++++.||+|+|||+.+-+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6899999999999988754
No 449
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=26.75 E-value=22 Score=42.72 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
..++++.||+|+|||.++..
T Consensus 45 ~~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 45799999999999988753
No 450
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=26.70 E-value=34 Score=40.05 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.6
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
.+.+++.+|+|+|||+.+-.
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARA 92 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCcChHHHHHHH
Confidence 34599999999999988653
No 451
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=26.46 E-value=52 Score=32.61 Aligned_cols=33 Identities=6% Similarity=0.007 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCCcchHHH
Q 000107 1155 RFYVALILSRLVQETPVLEVCETFKVARGMVQA 1187 (2191)
Q Consensus 1155 rfy~al~L~dli~e~~~~~i~~~y~v~rG~lq~ 1187 (2191)
+|+.++++.-+-.+.++.++|++|+|++..|..
T Consensus 36 ~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~ 68 (95)
T 2jrt_A 36 SRKAAVVKAVIHGLITEREALDRYSLSEEEFAL 68 (95)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHH
Confidence 477899999999999999999999999776654
No 452
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=26.28 E-value=33 Score=43.30 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
..+.+++.||+|+|||+.+-.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 457999999999999988753
No 453
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=26.24 E-value=52 Score=38.12 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=25.7
Q ss_pred CCeEEEEcC-CCCchhHHHHHHHHHHHHhcCCEEEEEch
Q 000107 541 RRNLVYCAS-TSAGKSFVAEILMLRRLISTGKMALLVLP 578 (2191)
Q Consensus 541 gknlIi~AP-TGSGKTlvael~iL~~ll~~g~kaL~I~P 578 (2191)
.+.++|.+. ||+|||++. +.+++.+.+.|.++.+.=|
T Consensus 21 ~k~i~ItgT~t~vGKT~vs-~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCA-RLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp CEEEEEEESSTTSSHHHHH-HHHHHHHHHTTCCEEEECC
T ss_pred CcEEEEEeCCCCCcHHHHH-HHHHHHHHhCCCceEEEee
Confidence 355666555 999999987 4456666677877777643
No 454
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=26.23 E-value=35 Score=37.39 Aligned_cols=18 Identities=11% Similarity=0.314 Sum_probs=15.1
Q ss_pred eEEEEcCCCCchhHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael 560 (2191)
.+.+.||+|+|||+..-+
T Consensus 2 ~i~l~G~nGsGKTTLl~~ 19 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKK 19 (178)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987643
No 455
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=26.12 E-value=63 Score=49.61 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=34.3
Q ss_pred cHHHHHHHHHcCCCCCCHHHHHhhhhc-ccccCCeEEEEcCCCCchhHHHHHH
Q 000107 510 PSEICSIYKKRGISKLYPWQVECLHVD-GVLQRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 510 p~~l~~~l~~~Gi~~l~p~Q~eal~~~-~il~gknlIi~APTGSGKTlvael~ 561 (2191)
...+.+.+.+.|+.---.|-.+++..- .+..+..+++.||||||||.++-..
T Consensus 891 ~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 891 VQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHH
Confidence 345666677778753333445555431 1335788999999999999987643
No 456
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=26.02 E-value=27 Score=40.48 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.5
Q ss_pred ccCCeEEEEcCCCCchhHHHHH
Q 000107 539 LQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael 560 (2191)
..+..++++|++|||||+++-.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHH
Confidence 3467899999999999998754
No 457
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=25.95 E-value=33 Score=39.45 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=18.4
Q ss_pred cccCCeEEEEcCCCCchhHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVA 558 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlva 558 (2191)
+..|+.+.+.||+|||||+..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 457899999999999999864
No 458
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=25.94 E-value=36 Score=39.01 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.+..+++.||.|||||+.+-+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 357899999999999998754
No 459
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=25.81 E-value=1.2e+02 Score=33.46 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=41.8
Q ss_pred CcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHHH
Q 000107 780 HSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEERE 859 (2191)
Q Consensus 780 ~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR~ 859 (2191)
.++||.||++.-+..++..+.++..... ...+..+||+....++.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~-----------------------------------~~~v~~~~g~~~~~~~~ 127 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMP-----------------------------------NVKVAVFFGGLSIKKDE 127 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTST-----------------------------------TCCEEEESCCSCHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCC-----------------------------------CceEEEEeCCCChHHHH
Confidence 4899999999988888777765432110 12277899998876654
Q ss_pred HHHHHhhcCCceEEEecc
Q 000107 860 VVETCYRKGLVRVLTATS 877 (2191)
Q Consensus 860 ~Ve~~Fr~G~ikVLVATs 877 (2191)
. .+..+..+|+|+|+
T Consensus 128 ~---~~~~~~~~i~v~T~ 142 (220)
T 1t6n_A 128 E---VLKKNCPHIVVGTP 142 (220)
T ss_dssp H---HHHHSCCSEEEECH
T ss_pred H---HHhcCCCCEEEeCH
Confidence 3 34456678999996
No 460
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=25.80 E-value=33 Score=42.21 Aligned_cols=20 Identities=30% Similarity=0.207 Sum_probs=16.5
Q ss_pred eEEEEcCCCCchhHHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEILM 562 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~i 562 (2191)
-.+|+||||||||.++....
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67799999999999876543
No 461
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=25.68 E-value=59 Score=36.80 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=25.7
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEE
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLV 576 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I 576 (2191)
..|.-+++.|+.|||||+++... .+.+...|..++++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l-~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYL-AERLRERGIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH-HHHHHTTTCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHH-HHHHHHcCCCcccc
Confidence 45778999999999999998653 34444455555443
No 462
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.42 E-value=34 Score=43.50 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
...|+++.||+|+|||.++...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHH
Confidence 4579999999999999988643
No 463
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=25.35 E-value=1.2e+02 Score=32.13 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=49.5
Q ss_pred cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCC--------CCCCCceEEEchHHHHHHHHHhhhcCCC
Q 000107 569 TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGS--------LPKDTSVAVCTIEKANSLVNRMLEEGRL 640 (2191)
Q Consensus 569 ~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~--------l~~~~~IiV~TpEkl~~Ll~~l~~~~~L 640 (2191)
.+.++|+.++++.-+...++.|.. .|+.+..++|+..... .....+|+|||.- +. ....+
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~---~Gld~ 101 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDD----LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-----AA---RGIDI 101 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----GT---TTCCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----hh---cCCch
Confidence 567899999999988888877655 4788888998754211 1235789999942 11 23367
Q ss_pred CccceEEEccc
Q 000107 641 SEIGIIVIDEL 651 (2191)
Q Consensus 641 ~~l~lVVIDEa 651 (2191)
..+++||.-+.
T Consensus 102 ~~~~~Vi~~~~ 112 (163)
T 2hjv_A 102 ENISLVINYDL 112 (163)
T ss_dssp SCCSEEEESSC
T ss_pred hcCCEEEEeCC
Confidence 78899887443
No 464
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=25.32 E-value=47 Score=44.93 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=16.0
Q ss_pred eEEEEcCCCCchhHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael 560 (2191)
++++.||||+|||.++-.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARA 540 (758)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 699999999999998753
No 465
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=25.23 E-value=37 Score=38.41 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=16.5
Q ss_pred eEEEEcCCCCchhHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~ 561 (2191)
.+++.|+.|||||+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999998654
No 466
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=25.00 E-value=37 Score=37.58 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=16.1
Q ss_pred eEEEEcCCCCchhHHHHHH
Q 000107 543 NLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 543 nlIi~APTGSGKTlvael~ 561 (2191)
.+.+.||.|||||+++-+.
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999987543
No 467
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=24.56 E-value=40 Score=35.81 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCCchhHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvae 559 (2191)
..-.+|.+|+|+|||.+..
T Consensus 23 ~g~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLD 41 (149)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3467889999999998855
No 468
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=24.56 E-value=7.4e+02 Score=27.30 Aligned_cols=112 Identities=5% Similarity=0.019 Sum_probs=67.3
Q ss_pred cCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCC-----CCCCCCceEEEchHHHHHHHHHhhhcCCCCcc
Q 000107 569 TGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGG-----SLPKDTSVAVCTIEKANSLVNRMLEEGRLSEI 643 (2191)
Q Consensus 569 ~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~-----~l~~~~~IiV~TpEkl~~Ll~~l~~~~~L~~l 643 (2191)
.+.++++++|+..|..-..+-+. ..+..+..+.++.... .+..+++|+|+--+... ++++. +
T Consensus 3 ~~~~I~~iapy~~l~~~~~~i~~----e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~-~lr~~--------~ 69 (196)
T 2q5c_A 3 LSLKIALISQNENLLNLFPKLAL----EKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSD-YIKKS--------V 69 (196)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHH----HHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHH-HHHTT--------C
T ss_pred CCCcEEEEEccHHHHHHHHHHHh----hhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHH-HHHHh--------C
Confidence 35689999999988874333223 2344565555554211 11457888888766544 34331 1
Q ss_pred ceEEEcccccccccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeccCCCHHHHHHHhhcc
Q 000107 644 GIIVIDELHMVADQNRGYLLELLLTKLRYAAGEGTSDSSSGENSGTSSGKADPAHGLQIVGMSATMPNVAAVADWLQAA 722 (2191)
Q Consensus 644 ~lVVIDEaH~l~d~~RG~~lE~lL~kLr~~~~~~~~~s~~~~~~~~~~~~~~~~~~iqII~mSATL~N~~~la~wL~a~ 722 (2191)
+.=|| |+.. .++.+-..|.+.+.. ..++=+|++..++...+.+.++|+..
T Consensus 70 ~iPVV-~I~~-----s~~Dil~al~~a~~~-----------------------~~kIavvg~~~~~~~~~~~~~ll~~~ 119 (196)
T 2q5c_A 70 SIPSI-SIKV-----TRFDTMRAVYNAKRF-----------------------GNELALIAYKHSIVDKHEIEAMLGVK 119 (196)
T ss_dssp SSCEE-EECC-----CHHHHHHHHHHHGGG-----------------------CSEEEEEEESSCSSCHHHHHHHHTCE
T ss_pred CCCEE-EEcC-----CHhHHHHHHHHHHhh-----------------------CCcEEEEeCcchhhHHHHHHHHhCCc
Confidence 22222 3333 455555555555432 24678899999988899999999754
No 469
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=24.17 E-value=1.1e+02 Score=34.24 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=38.5
Q ss_pred cCCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHH
Q 000107 778 EGHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEE 857 (2191)
Q Consensus 778 ~g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~e 857 (2191)
.+.++||.||++.-+..++..+.+..... ...+..+||+....+
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------------------------------------~~~~~~~~g~~~~~~ 139 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNH------------------------------------DFSAGLIIGGKDLKH 139 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTS------------------------------------SCCEEEECCC--CHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCC------------------------------------CeeEEEEECCCCHHH
Confidence 45789999999998888887776543211 123777888876554
Q ss_pred HHHHHHHhhcCCceEEEecc
Q 000107 858 REVVETCYRKGLVRVLTATS 877 (2191)
Q Consensus 858 R~~Ve~~Fr~G~ikVLVATs 877 (2191)
+.... +..+|+|+|+
T Consensus 140 ~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 140 EAERI-----NNINILVCTP 154 (236)
T ss_dssp HHHHH-----TTCSEEEECH
T ss_pred HHHhC-----CCCCEEEECH
Confidence 43322 3568999996
No 470
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=24.07 E-value=37 Score=39.03 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=19.0
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|+.+.+.||+|||||+..-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLS 49 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 5578999999999999998753
No 471
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=23.98 E-value=4.1e+02 Score=32.63 Aligned_cols=67 Identities=6% Similarity=-0.156 Sum_probs=34.4
Q ss_pred cchHHHHHHhcCCC-CCCCCchhHHHHHHHhhChHHHHHhhc-cCchhhhhHHHHhhhHHHHHHHHHHHHHHH
Q 000107 1652 GIDMCIVSWILWPD-DERSSNPNLEKEVKKRLSSEAAAAANR-SGRWKNQMRRAAHNGCCRRVAQTRALCSVL 1722 (2191)
Q Consensus 1652 ~~Dt~lAawLL~P~-~~~~~l~~L~~~~~~~l~~e~~~~~~~-~g~~~~~~~~~~~~ya~~Da~~t~~L~~~L 1722 (2191)
.+|++-+..-++-. ..+++|+++++ ..++....+.... ...|. .-......||..|+..+++|+..+
T Consensus 267 ~lD~~~~~k~~~~~~l~sysL~~Va~---~~Lg~~K~d~~~~i~~~~~-~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 267 ILDYLDLYKKFAFTNLPSFSLESVAQ---HETKKGKLPYDGPINKLRE-TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp ECCHHHHHHHHTCCCCSCCSHHHHHH---HHHSCCCCCCSSCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEHHHHHhhcCcCcccCCCHHHHHH---HHhCCCCCCcHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47887554442211 45666555543 3443321110010 11233 222345779999999999887764
No 472
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=23.92 E-value=27 Score=38.27 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.6
Q ss_pred CeEEEEcCCCCchhHHHHH
Q 000107 542 RNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 542 knlIi~APTGSGKTlvael 560 (2191)
+.+.+.+++|||||+...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp CEEEEEESCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3577899999999988754
No 473
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=23.28 E-value=41 Score=42.48 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=17.7
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
..+++++.+|+|+|||+++-.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHH
Confidence 357899999999999998743
No 474
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=23.10 E-value=1.3e+02 Score=33.90 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=33.4
Q ss_pred CCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHH
Q 000107 779 GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEER 858 (2191)
Q Consensus 779 g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR 858 (2191)
+.++||.+|++.-+..++..+.+..... ...+...+|+....+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~------------------------------------~~~~~~~~g~~~~~~- 140 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYM------------------------------------GATCHACIGGTNVRN- 140 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTT------------------------------------TCCEEEECC-------
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhc------------------------------------CceEEEEECCCchHH-
Confidence 4689999999998888877776543211 112556677754332
Q ss_pred HHHHHHhhcCCceEEEecc
Q 000107 859 EVVETCYRKGLVRVLTATS 877 (2191)
Q Consensus 859 ~~Ve~~Fr~G~ikVLVATs 877 (2191)
....+..+..+|+|+|+
T Consensus 141 --~~~~l~~~~~~Ilv~Tp 157 (237)
T 3bor_A 141 --EMQKLQAEAPHIVVGTP 157 (237)
T ss_dssp ---------CCCSEEEECH
T ss_pred --HHHHHhcCCCCEEEECH
Confidence 23345566678999995
No 475
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=22.95 E-value=41 Score=37.62 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCchhHHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~ 561 (2191)
+..+++.|+.|||||+++-..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 357899999999999987653
No 476
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=22.86 E-value=72 Score=41.07 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=20.8
Q ss_pred cccCCeEEEEcCCCCchhHHHHHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEILMLR 564 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael~iL~ 564 (2191)
+..+.+++|.|+||||||.+.-..++.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999876544443
No 477
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=22.76 E-value=52 Score=36.84 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=28.7
Q ss_pred chhhhhhcCCCCCCHHHHHHHHHc----CCCCHHHHHc
Q 000107 1227 RAEIVELTTIPYVKGSRARALYKA----GLRTPLAIAE 1260 (2191)
Q Consensus 1227 ~~ELl~L~~ip~v~~~RAR~Ly~a----G~~t~~~la~ 1260 (2191)
...+-+|+.|||||...|++..+. .|+|++||.+
T Consensus 128 TA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~ 165 (205)
T 2i5h_A 128 TTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQ 165 (205)
T ss_dssp CSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHH
T ss_pred cCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 567778899999999999777654 8999999964
No 478
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=22.73 E-value=45 Score=37.00 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=16.6
Q ss_pred CCeEEEEcCCCCchhHHHHH
Q 000107 541 RRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael 560 (2191)
|+.+.+.+|+|+|||+..-+
T Consensus 1 G~~i~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHK 20 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHH
Confidence 45788999999999987654
No 479
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=22.69 E-value=2.1e+02 Score=31.10 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=39.9
Q ss_pred CCcEEEEeCchhHHHHHHHHHHHHHhhcccccCCCCchhhhhHHHHHHhhcCCCCCChhhhhhcCCcEEEEcCCCCHHHH
Q 000107 779 GHSVLIFCSSRKGCESTARHVSKFLKKFSINVHSSDSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTVEER 858 (2191)
Q Consensus 779 g~~vLVF~~Sr~~~e~lA~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~gld~~L~~~l~~GVa~hHagLs~~eR 858 (2191)
+.++||.||++.-+..++..+.+.....+ ...+...+|+....+.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-----------------------------------~~~~~~~~g~~~~~~~ 115 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMG-----------------------------------GAKVMATTGGTNLRDD 115 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSS-----------------------------------SCCEEEECSSSCHHHH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcC-----------------------------------CceEEEEeCCccHHHH
Confidence 45799999999988887777765432110 1237778998876554
Q ss_pred HHHHHHhhcCCceEEEecc
Q 000107 859 EVVETCYRKGLVRVLTATS 877 (2191)
Q Consensus 859 ~~Ve~~Fr~G~ikVLVATs 877 (2191)
.. .+ .+..+|+|+|+
T Consensus 116 ~~---~~-~~~~~i~v~T~ 130 (206)
T 1vec_A 116 IM---RL-DDTVHVVIATP 130 (206)
T ss_dssp HH---HT-TSCCSEEEECH
T ss_pred HH---hc-CCCCCEEEeCH
Confidence 32 22 24568999997
No 480
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=22.64 E-value=43 Score=38.37 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=18.5
Q ss_pred cccCCeEEEEcCCCCchhHHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvael 560 (2191)
+..|..+-+.||.|||||+++-+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 34577788999999999998754
No 481
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.25 E-value=71 Score=49.68 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHcCCCCCCHHHHHhhhhc-ccccCCeEEEEcCCCCchhHHHHH
Q 000107 509 LPSEICSIYKKRGISKLYPWQVECLHVD-GVLQRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 509 Lp~~l~~~l~~~Gi~~l~p~Q~eal~~~-~il~gknlIi~APTGSGKTlvael 560 (2191)
|-..+.+.+.+.|+.---.|-.++++.- .+..+.-+++.||||||||.++-.
T Consensus 873 l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 4466777778888854444555666531 123467799999999999999764
No 482
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=22.13 E-value=42 Score=38.86 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.1
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|+.+.+.||+|||||+..-
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998754
No 483
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=22.05 E-value=42 Score=39.62 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=19.0
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|+-+.+.||+|||||+..-
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998753
No 484
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=21.98 E-value=34 Score=41.14 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.1
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|+.+.+.||+|||||+..-
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHH
Confidence 4579999999999999998753
No 485
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=21.97 E-value=43 Score=38.29 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.0
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|+.+.+.+|.|||||+..-
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5579999999999999998753
No 486
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=21.96 E-value=44 Score=43.39 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
.+..+++.||+|+|||+.+-.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 688999999999999988753
No 487
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=21.88 E-value=1.2e+02 Score=33.19 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=48.8
Q ss_pred CCchhHHHHHHHHHHHHhcCCEEEEEchhHHHHHHHHHHHHHHhhccCCeEEEEeccCCCCCC--------CCCCceEEE
Q 000107 551 SAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHLEVLLEPLGRHVRSYYGNQGGGSL--------PKDTSVAVC 622 (2191)
Q Consensus 551 GSGKTlvael~iL~~ll~~g~kaL~I~P~raLA~q~~~~l~~l~~~lg~~V~~~~G~~~~~~l--------~~~~~IiV~ 622 (2191)
.+.|.. +++-+++.. ..+.++||.++++.-+...++.|.. .|+.+..++|+...... ....+|+||
T Consensus 29 ~~~K~~-~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLva 102 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 102 (185)
T ss_dssp GGGHHH-HHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTSSSEEEE
T ss_pred cHHHHH-HHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 455643 233344432 1467899999999988888777655 47888889987643221 235789999
Q ss_pred chHHHHHHHHHhhhcCCCCccceEEE
Q 000107 623 TIEKANSLVNRMLEEGRLSEIGIIVI 648 (2191)
Q Consensus 623 TpEkl~~Ll~~l~~~~~L~~l~lVVI 648 (2191)
|.- +. ....+..+++||.
T Consensus 103 T~~-----~~---~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 103 TAV-----AA---RGLDISNVKHVIN 120 (185)
T ss_dssp EC--------------CCCSBSEEEE
T ss_pred cCh-----hh---cCCCcccCCEEEE
Confidence 942 21 2235778888886
No 488
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=21.87 E-value=50 Score=35.52 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=18.7
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|..+.+.+|.|+|||+..-
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 4678899999999999998753
No 489
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=21.80 E-value=50 Score=38.28 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.1
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|+.+.+.||.|||||+..-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998754
No 490
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=21.74 E-value=50 Score=38.71 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.0
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|+.+.+.||+|||||+..-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998754
No 491
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=21.68 E-value=1.2e+02 Score=36.09 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhccCC-----ccEEEechHHHHH-HHHh
Q 000107 1583 KQRWKRIGEIMEKRD-----VRKFTWNMKVQIQ-VLKH 1614 (2191)
Q Consensus 1583 ~~~~~~L~~lLe~~~-----v~kv~hNlK~dl~-vL~~ 1614 (2191)
.+.+..+..++.+.. ...|+||+.||+. .|..
T Consensus 154 ~evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~ 191 (299)
T 1zbh_A 154 PQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNI 191 (299)
T ss_dssp HHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHH
Confidence 456777778887632 4689999999998 8865
No 492
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=21.65 E-value=43 Score=38.02 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=19.0
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|+.+.+.||.|||||+..-
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998754
No 493
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=21.63 E-value=44 Score=39.00 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.1
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|+.+.+.||+|||||+..-
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAK 64 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 5578999999999999998754
No 494
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=21.53 E-value=49 Score=37.79 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=24.0
Q ss_pred ccCCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEE
Q 000107 539 LQRRNLVYCASTSAGKSFVAEILMLRRLISTGKMALL 575 (2191)
Q Consensus 539 l~gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~ 575 (2191)
..|.-+++.||.|||||+++.... +.+.. +..++.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~-~~l~~-~~~~~~ 58 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVY-HRLVK-DYDVIM 58 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHH-HHHTT-TSCEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHH-HHHhc-CCCcee
Confidence 367889999999999999875433 33333 444443
No 495
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=21.32 E-value=72 Score=41.67 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHHHhcCCEEEEEc
Q 000107 541 RRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVL 577 (2191)
Q Consensus 541 gknlIi~APTGSGKTlvael~iL~~ll~~g~kaL~I~ 577 (2191)
.+.+++++..|.|||+++.-..+. +...|.++++|-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~-lA~~G~rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIR-LAEQGKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH-HHHTTCCEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHH-HHHCCCcEEEEE
Confidence 467899999999999998765543 345688888865
No 496
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.30 E-value=44 Score=45.18 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=18.7
Q ss_pred cCCeEEEEcCCCCchhHHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEIL 561 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael~ 561 (2191)
...|+++.||+|+|||.++...
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~l 221 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGL 221 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHH
Confidence 4579999999999999988643
No 497
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=21.28 E-value=44 Score=41.00 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.1
Q ss_pred cCCeEEEEcCCCCchhHHHHH
Q 000107 540 QRRNLVYCASTSAGKSFVAEI 560 (2191)
Q Consensus 540 ~gknlIi~APTGSGKTlvael 560 (2191)
...-.+++||||+|||.+.+-
T Consensus 24 ~~gl~vi~G~NGaGKT~ileA 44 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEA 44 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 345678999999999998663
No 498
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=21.17 E-value=42 Score=38.67 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.0
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|+.+.+.||+|||||+..-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFS 46 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5578999999999999998753
No 499
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=21.04 E-value=1.2e+02 Score=34.55 Aligned_cols=41 Identities=24% Similarity=0.193 Sum_probs=33.0
Q ss_pred CCCHHHHHcCCHHHHHHHHhhcchhHHHHHhhhhHHHHHHHHHHHHHHHH
Q 000107 1252 LRTPLAIAEASISEIVKALFESSSWIAEAQRRVQLGVAKKIKNGARKIVL 1301 (2191)
Q Consensus 1252 ~~t~~~la~a~~~~l~~~l~~~~~~~~~~~~~~~~~~A~~I~~~A~~l~~ 1301 (2191)
|-|+++|++++.++|..++... ++....|+.|++-|+.++.
T Consensus 64 fptp~~la~a~~e~l~~~i~~~---------G~~~~KA~~l~~~a~~i~~ 104 (221)
T 1kea_A 64 YKCFEDILKTPKSEIAKDIKEI---------GLSNQRAEQLKELARVVIN 104 (221)
T ss_dssp CCSHHHHHHSCHHHHHHHTGGG---------SCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999998532 3444578889988888764
No 500
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=20.95 E-value=46 Score=39.07 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.0
Q ss_pred cccCCeEEEEcCCCCchhHHHH
Q 000107 538 VLQRRNLVYCASTSAGKSFVAE 559 (2191)
Q Consensus 538 il~gknlIi~APTGSGKTlvae 559 (2191)
+..|+-+.+.||+|||||+..-
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 4578999999999999998753
Done!