BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000108
         (2184 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
 pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
          Length = 355

 Score = 33.9 bits (76), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 179 HSEEFSCGEVHTMKLRVHPFASLRRGKIVIDAVLSHPTVLIAQKKDFSWLGL-------- 230
           +S EF+ G++H  KL+    A+ +   +   A+L    ++ A       + L        
Sbjct: 152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211

Query: 231 PSSEGGGLQRHFSTEEGIDYRTKTRRLAREEATD-RWYRDRDGMA 274
             S+ G + R F TE+G+  R   R L R +  D +W  D   +A
Sbjct: 212 TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLA 256


>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
 pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
 pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
          Length = 339

 Score = 33.5 bits (75), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 179 HSEEFSCGEVHTMKLRVHPFASLRRGKIVIDAVLSHPTVLIAQKKDFSWLGLPSSEGGGL 238
           +S EF+ G++H  +L+      + +G +V         V + +K D   +    S+ G L
Sbjct: 147 YSNEFNLGQIHVTRLQTDAEQVVGKGVLVKAHANPVKMVRLNRKGD---MVATCSQDGTL 203

Query: 239 QRHFSTEEGIDYRTKTRRLAREEATD-RWYRDRDGMA 274
            R F T+ G+  R   R L R    D RW  D   +A
Sbjct: 204 IRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLA 240


>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
           Cerevisiae
 pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
           Cerevisiae
 pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
           Cerevisiae
          Length = 589

 Score = 32.0 bits (71), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 346 VKIPGSGLRFWSKAIKGPKKHKFKKVNGSDMSVAGVTAKRRILERSAFAAQAYFQGLVQG 405
           +K P S L FW +A+K  K HK   V G D     +  K+       +  +  F  L   
Sbjct: 485 IKDPNSVLNFWKEALKFRKAHKDITVYGYDFEFIDLDNKKLFSFTKKYNNKTLFAAL-NF 543

Query: 406 KSDEPSQTSANDDV---LNFDNILVKSEGDTSAGT 437
            SD       NDD    L F N   K E D S+ T
Sbjct: 544 SSDATDFKIPNDDSSFKLEFGN-YPKKEVDASSRT 577


>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
 pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
          Length = 589

 Score = 31.6 bits (70), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 346 VKIPGSGLRFWSKAIKGPKKHKFKKVNGSDMSVAGVTAKRRILERSAFAAQAYFQGLVQG 405
           +K P S L FW +A+K  K HK   V G D     +  K+       +  +  F  L   
Sbjct: 485 IKDPNSVLNFWKEALKFRKAHKDITVYGYDFEFIDLDNKKLFSFTKKYNNKTLFAAL-NF 543

Query: 406 KSDEPSQTSANDDV---LNFDNILVKSEGDTSAGT 437
            SD       NDD    L F N   K E D S+ T
Sbjct: 544 SSDATDFKIPNDDSSFKLEFGN-YPKKEVDASSRT 577


>pdb|2XDV|A Chain A, Crystal Structure Of The Catalytic Domain Of Flj14393
          Length = 442

 Score = 30.8 bits (68), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 1940 PLILNFAVSGEIELNGPSHPKLIKPKGILTFENGDVNLVATQVRLKRE-HLNIAKFEPEH 1998
            PL   ++V  E  +  P H  ++KP  +L F  G ++   T   L    H+ I+ ++   
Sbjct: 181  PLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNS 240

Query: 1999 GLDPMLD 2005
              D +LD
Sbjct: 241  WGDFLLD 247


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,796,799
Number of Sequences: 62578
Number of extensions: 2719686
Number of successful extensions: 6198
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6175
Number of HSP's gapped (non-prelim): 35
length of query: 2184
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2070
effective length of database: 7,839,445
effective search space: 16227651150
effective search space used: 16227651150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)