BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000108
         (2184 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P48681|NEST_HUMAN Nestin OS=Homo sapiens GN=NES PE=1 SV=2
          Length = 1621

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 34/69 (49%)

Query: 246 EGIDYRTKTRRLAREEATDRWYRDRDGMAREAAVVGYIVSENSSCQLEDEALREASHSTK 305
           EG+  R +  RLARE  T+   R+R  +  E     ++ S+ +  + E EALR A    +
Sbjct: 89  EGVAGRCQQLRLARERTTEEVARNRRAVEAEKCARAWLSSQVAELERELEALRVAHEEER 148

Query: 306 LAISENFKC 314
           + ++    C
Sbjct: 149 VGLNAQAAC 157


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 804,265,885
Number of Sequences: 539616
Number of extensions: 34951192
Number of successful extensions: 78405
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 78400
Number of HSP's gapped (non-prelim): 12
length of query: 2184
length of database: 191,569,459
effective HSP length: 133
effective length of query: 2051
effective length of database: 119,800,531
effective search space: 245710889081
effective search space used: 245710889081
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)