Query 000108
Match_columns 2184
No_of_seqs 314 out of 681
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 18:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2911 Uncharacterized protei 100.0 5.4E-45 1.2E-49 490.0 65.0 400 1698-2180 865-1276(1278)
2 PF04357 DUF490: Family of unk 100.0 1.1E-27 2.4E-32 298.9 39.9 357 1769-2180 1-377 (379)
3 TIGR02099 conserved hypothetic 99.8 3.2E-14 7E-19 202.1 78.4 564 559-1179 67-717 (1260)
4 TIGR02099 conserved hypothetic 99.7 7E-13 1.5E-17 188.7 51.3 278 649-968 432-746 (1260)
5 PRK10899 hypothetical protein; 99.2 7.8E-07 1.7E-11 124.4 53.9 272 649-963 198-505 (1022)
6 COG2911 Uncharacterized protei 99.1 8.2E-07 1.8E-11 123.3 44.9 76 1425-1502 877-956 (1278)
7 PRK10833 putative assembly pro 99.0 2.6E-07 5.7E-12 123.5 33.0 406 573-1004 79-577 (617)
8 PRK10899 hypothetical protein; 98.7 0.0031 6.7E-08 89.1 61.2 114 1450-1576 751-873 (1022)
9 COG3164 Predicted membrane pro 98.6 0.00018 3.9E-09 96.2 41.3 258 561-833 68-353 (1271)
10 PF13502 AsmA_2: AsmA-like C-t 98.6 4.2E-06 9.1E-11 96.9 21.3 192 654-860 1-220 (220)
11 PF13502 AsmA_2: AsmA-like C-t 98.5 7.6E-06 1.6E-10 94.8 20.5 135 1465-1617 2-169 (220)
12 PF05170 AsmA: AsmA family; I 98.3 1.4E-05 3.1E-10 107.0 20.9 91 896-997 446-536 (604)
13 PF13116 DUF3971: Protein of u 98.3 0.00013 2.7E-09 88.9 27.0 244 716-996 2-279 (288)
14 PF05170 AsmA: AsmA family; I 98.3 6.9E-05 1.5E-09 100.5 26.8 206 704-917 377-598 (604)
15 PF05359 DUF748: Domain of Unk 98.2 3.6E-05 7.9E-10 84.7 17.5 131 628-767 2-138 (151)
16 COG3164 Predicted membrane pro 98.1 0.0017 3.8E-08 87.2 30.5 268 648-960 442-750 (1271)
17 PF13116 DUF3971: Protein of u 98.0 0.00041 8.9E-09 84.4 22.1 210 631-856 56-279 (288)
18 PRK10833 putative assembly pro 97.7 0.0014 3E-08 88.4 21.6 285 1476-1835 251-575 (617)
19 PF04357 DUF490: Family of unk 97.7 0.0007 1.5E-08 85.5 17.7 127 1714-1848 47-177 (379)
20 PRK10695 hypothetical protein; 95.3 20 0.00043 49.8 38.8 64 1476-1553 680-743 (859)
21 PF01203 T2SN: Type II secreti 94.3 1.5 3.3E-05 51.9 17.5 116 712-834 81-205 (221)
22 TIGR03545 conserved hypothetic 93.9 0.14 3E-06 68.0 8.4 95 134-228 23-119 (555)
23 COG2982 AsmA Uncharacterized p 93.3 0.26 5.6E-06 66.5 9.6 79 567-647 77-168 (648)
24 PRK10695 hypothetical protein; 92.2 3.1 6.7E-05 57.2 17.1 214 690-915 548-805 (859)
25 PF13109 AsmA_1: AsmA-like C-t 92.2 4.4 9.6E-05 47.7 16.3 152 705-865 20-198 (214)
26 PF13109 AsmA_1: AsmA-like C-t 86.0 3.8 8.2E-05 48.2 9.8 102 1456-1566 97-198 (214)
27 PF11739 DctA-YdbH: Dicarboxyl 77.0 35 0.00076 40.2 13.6 136 772-915 12-156 (207)
28 PF05359 DUF748: Domain of Unk 74.0 81 0.0018 34.8 14.9 64 1689-1752 75-143 (151)
29 PF11739 DctA-YdbH: Dicarboxyl 52.4 1.6E+02 0.0035 34.8 12.7 56 690-746 42-98 (207)
30 PF09898 DUF2125: Uncharacteri 42.0 2.4E+02 0.0053 35.3 12.8 52 781-833 207-258 (312)
31 PF01203 T2SN: Type II secreti 31.1 3.9E+02 0.0084 31.8 11.5 74 1712-1791 100-177 (221)
32 PLN03160 uncharacterized prote 21.6 4.5E+02 0.0098 31.5 9.6 104 1224-1339 66-171 (219)
33 PF12624 Chorein_N: N-terminal 21.2 1.4E+02 0.0029 32.2 4.8 88 138-228 3-97 (118)
No 1
>COG2911 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=5.4e-45 Score=490.01 Aligned_cols=400 Identities=19% Similarity=0.210 Sum_probs=315.5
Q ss_pred cCchhhHhhcccccceeeEEEEEEEEeeecCCceEEEEEEEeeeEEecCcCCcceeeeeEEEEEeCceEEEEeeEEEecC
Q 000108 1698 GGMMLLTALSPYAKWLQGNADIMLQVRGTVEQPVLDGSASFHRASISSPVLRKPLTNFGGTVHVKSNRLCITSLESRVSR 1777 (2184)
Q Consensus 1698 ~~L~lL~~lt~~v~~l~G~l~~~L~V~GTl~~P~l~G~v~l~ng~~~~~~l~~~Lt~i~g~i~f~g~~i~i~~Lta~~g~ 1777 (2184)
.++.+..+++.+...++|.++++++++||+.+|++.|+++++++.+..+..+..|++.++.++|+++++++++ .+..+.
T Consensus 865 ~n~~~~~~~~~~g~~~~G~lna~l~l~Gt~~~P~l~G~~~~~g~~~~~~~~~l~l~~g~l~~~~~g~~~~l~~-~~~~~~ 943 (1278)
T COG2911 865 FNLALPNPLLTRGEKLSGRLNANLSLGGTLQAPQLGGQVTLDGIRIDDNSMPLDLTNGQLRVNFAGNRSTLSG-SGKLTG 943 (1278)
T ss_pred echhhhhhhccCCcccceEEEEEEEeccccCCCeeccEEEecCceeecCccceeEecCeEEEEeCCceeEeec-ceEEcC
Confidence 3455666666678899999999999999999999999999999999999999999999999999999999998 778877
Q ss_pred CceEEEEEeecCCCCccCCCccEEEEecceeeeccCcEEEEEeeeEEEEeeCCCceEEEEEEEeeEEEEcCCCCCCCCCC
Q 000108 1778 RGKLFIKGNLPLRTNEASLGDKIDLKCEVLEVRAKNILSGQVDTQMQITGSILQPTISGNIKLSHGEAYLPHDKGSGTAP 1857 (2184)
Q Consensus 1778 ~G~l~~~G~l~L~~~~~~~~~~L~l~ld~l~l~~~~l~~G~vsGdL~ItGtl~~P~I~G~V~l~~g~I~Ip~~~~~~~~~ 1857 (2184)
+|+++++|++.|.... +++.+++++++++.+..+.+++..++|++.|.-+.....|+|.|+++++.|.+.+.++.....
T Consensus 944 ~G~l~~sG~v~~~~~~-~~~~~l~~~~~~~r~~~~~~~~~~vsp~~~l~~sp~~~~ltg~I~vp~~li~~~~~~~~~v~v 1022 (1278)
T COG2911 944 DGTLNLSGTVSWSQIE-NFPANLSAKGNRFRVTDPPMVRLVVSPDGPLGASPKLLTLTGAITVPWALIGSQSLPPSAVKV 1022 (1278)
T ss_pred CceEEeeccccccccc-CCCceeEEEeceeEeccCCceEEEEcCCceEEecCceeEEEEEEEcchhhccccccCcccccC
Confidence 9999999999998533 456899999999999999999999999999999998899999999999999998877654321
Q ss_pred ccccccccCCCCCCCcccccccccccccccCccccccCCCCCCCCcccchhhhhhhccCCCCccccccceEEEecCceEE
Q 000108 1858 FNRLEANQSRLPGGGINRAVASRYVSRFFSSEPAASMTKFPRPSVKSAADEKEMEQVNIKPNVDIRLSDLKLVLGPELRI 1937 (2184)
Q Consensus 1858 l~~l~s~~s~ip~~g~~~~~~~~~v~~~~~~e~a~~~~~~~~p~~~~~~~e~~~~~~~~~P~~~l~l~dL~l~LG~dVri 1937 (2184)
+. . .| +.- ... ..+. ++++ ... ++.+.+ ||+|.+|++|+|
T Consensus 1023 ----s~---------------~-~V-~~~-~~~---~~~~--------~~~~-----~~~-~~~i~~-Dl~V~~g~~i~~ 1062 (1278)
T COG2911 1023 ----SP---------------D-VV-RLN-DVD---LPRA--------TTPK-----TAS-PSPINS-DLDVNAGDDIFV 1062 (1278)
T ss_pred ----Cc---------------h-he-eec-ccc---cccc--------cccC-----CCC-CCceeE-EEEEEcCCeEEE
Confidence 00 1 01 100 000 0000 0000 011 133554 899999999999
Q ss_pred EcccceeEEEEEEEEEeccCCCCCcccCceEEEeeeEEEEccEEEEEeccccceEEeCCCCCC-CcEEEEEEEEe----e
Q 000108 1938 VYPLILNFAVSGEIELNGPSHPKLIKPKGILTFENGDVNLVATQVRLKREHLNIAKFEPEHGL-DPMLDLALVGS----E 2012 (2184)
Q Consensus 1938 ~~p~~l~f~l~G~L~l~Gtl~~~~p~~~G~I~l~rG~vnll~t~F~L~rG~~n~a~F~p~~gl-dP~LDi~A~t~----~ 2012 (2184)
+.. +++.+++|+|+|.++.. .+...|+|+++||||.+||++|.|++|+ +.|.+ ++ +|+|||+|+++ +
T Consensus 1063 ~g~-Gld~~L~G~L~v~q~~~--~l~~~G~~~l~rGRy~a~GqdL~i~~G~---l~fsG--~~~qP~LnI~A~R~~~~~t 1134 (1278)
T COG2911 1063 RGF-GLDAELGGDLHVRQPKG--NLGLNGQINLRRGRYRAYGQDLTIRKGT---LLFSG--PLDQPYLNIEAIRNPDSTT 1134 (1278)
T ss_pred Eec-ccccccCceEEecccCC--CccccceEEecccchhhcCCeeEEEeeE---EEeec--CCCCceeeeEEEecCCCce
Confidence 986 89999999999998776 8999999999999999999999999887 99995 45 59999999998 2
Q ss_pred e-EEEEEecCCCCCcceEEeecCCccccCCCHHHHHH-HhccccccccccCCcHHHHHHHHHHHH-----hhhccccccC
Q 000108 2013 W-QFRIQSRGSNWQDKIVVTSTRSMEQDVLSPTEAAR-VLESQLAESILEGDGQLAFKKLATATL-----ETLMPRIEGK 2085 (2184)
Q Consensus 2013 v-~~~V~G~as~~~p~l~LsS~PslpqD~~s~~eils-LL~~~~~~s~~~gd~~l~l~~LA~aal-----~~l~~~I~~~ 2085 (2184)
. .|+|+|+|+ +|+++|||+|+|||| |+|| |++++..+| .++.++++ .++++.+ +.+.++|+
T Consensus 1135 a~~V~VtG~A~--~P~it~~S~PampQd-----eaLSyLl~Grsl~S-sge~aqla--aaaaaL~G~g~s~~lvg~l~-- 1202 (1278)
T COG2911 1135 AGAVRVTGTAD--SPRITFFSEPAMPQD-----EALSYLLFGRSLSS-SGEIAQLA--AAAAALAGGGGSGSLVGKLG-- 1202 (1278)
T ss_pred eeEEEEEeecC--CCeeEEecCCCCCHH-----HHHHHHHhCCccCC-chhhhHHH--HHHHHHhhCCCchhhhHhHH--
Confidence 4 489999999 689999999999985 8999 655554432 12223221 2222211 23455665
Q ss_pred CcccceeeEeeecCCCCcccccCCCCCccccccccceeeeEEeeecccceEEEEEEeccccccceEEEEEEEecccEEEE
Q 000108 2086 GEFGQARWRLVYAPQIPSLLSVDPTVDPLKSLANNISFGTEVEVQLGKRLQASIVRQMKDSEMAMQWTLIYQLTSRLRVL 2165 (2184)
Q Consensus 2086 ~~lGld~~rl~~a~~~p~~~s~d~~~d~~~~~~~~l~~~~evGkyls~~l~vsv~~~l~~~~~~~q~~L~Y~Lt~~L~l~ 2165 (2184)
++||+|++.|.|.+ .+|. + .+.|||||+||+|+.|.++++++ ..+++|+|+|+++|+|+
T Consensus 1203 ~~~Gvddl~l~T~g----------~g~~------s---vv~vgkyit~rlyv~ygvg~~~~--~~~~tl~yrL~r~l~L~ 1261 (1278)
T COG2911 1203 EAFGVDDLALDTEG----------VGDS------S---VVVVGKYITDRLYVKYGVGIFDG--LAKATLRYRLMRGLYLE 1261 (1278)
T ss_pred HHhCCccccccccC----------CCCc------e---EEEeccccCCCeEEEEeeeccCC--cceEEEEEEecCceEEE
Confidence 89999999997432 1221 1 13479999999999999999875 48999999999999999
Q ss_pred EEEcCcceEEEEEEe
Q 000108 2166 LQSAPSKRLLFEYSA 2180 (2184)
Q Consensus 2166 ~~s~~~~~~~~ey~~ 2180 (2184)
+.++.+..+-+-|+.
T Consensus 1262 a~sg~~~a~~i~y~k 1276 (1278)
T COG2911 1262 AVSGVDQALDILYQK 1276 (1278)
T ss_pred EecCCccceeEEEee
Confidence 888888665555553
No 2
>PF04357 DUF490: Family of unknown function (DUF490); InterPro: IPR007452 This family contains several proteins of uncharacterised function.
Probab=99.97 E-value=1.1e-27 Score=298.86 Aligned_cols=357 Identities=21% Similarity=0.271 Sum_probs=245.9
Q ss_pred EeeEEEecCCceEEEEEeecCCCCccCCCccEEEEecceeeeccCcEEEEEeeeEEEEeeCCCceEEEEEEEeeEEEEcC
Q 000108 1769 TSLESRVSRRGKLFIKGNLPLRTNEASLGDKIDLKCEVLEVRAKNILSGQVDTQMQITGSILQPTISGNIKLSHGEAYLP 1848 (2184)
Q Consensus 1769 ~~Lta~~g~~G~l~~~G~l~L~~~~~~~~~~L~l~ld~l~l~~~~l~~G~vsGdL~ItGtl~~P~I~G~V~l~~g~I~Ip 1848 (2184)
++|++++..+|+++++|.+.|... ....++|+++++++.+..+..+.|.++|+++|+|+...|.|+|++.+.+++|.++
T Consensus 1 ~~l~~~~~~~G~l~~~G~i~~~~~-~~~~~~L~l~~~~l~l~~~~~~~g~~sg~l~l~G~~~~~~i~G~l~~~~~~i~~~ 79 (379)
T PF04357_consen 1 QNLTARDAGGGTLTLSGTIDLNNF-SDFRLDLNLSGNNLPLLNPPEYQGTLSGDLQLTGTLQQPRISGDLTVSNGTINLP 79 (379)
T ss_pred CeEEEEECCCCEEEEEEEEEcccC-CCCCEEEEEEEceEEEeCCCCcEEEEeEEEEEEecCcceEEEEEEEECCcEEEec
Confidence 367899644899999999999432 2345889999999999998889999999999999999999999999999999998
Q ss_pred CCCCCCCCCccccccccCCCCCCCcccccccccccccccCccccccCCCCCCCCcccchhhhhhhccCCCCccccccceE
Q 000108 1849 HDKGSGTAPFNRLEANQSRLPGGGINRAVASRYVSRFFSSEPAASMTKFPRPSVKSAADEKEMEQVNIKPNVDIRLSDLK 1928 (2184)
Q Consensus 1849 ~~~~~~~~~l~~l~s~~s~ip~~g~~~~~~~~~v~~~~~~e~a~~~~~~~~p~~~~~~~e~~~~~~~~~P~~~l~l~dL~ 1928 (2184)
......... . + ++ .+...+. +.+. ..+.......+. ....+...+.+ ||+
T Consensus 80 ~~~~~~~~~-----~-~---------------dv-~~~~~~~-~~~~--~~~~~~~~~~~~----~~~~~~~~l~~-dl~ 129 (379)
T PF04357_consen 80 PFPSSSSAS-----D-S---------------DV-VFVDRER-VEAN--PDTGEAEKPSEP----PGFPLPPDLNL-DLD 129 (379)
T ss_pred cCCCccccc-----c-c---------------eE-EEeCccc-cccc--cccccccccccc----ccccccccccc-cee
Confidence 765332110 0 0 00 0000000 0000 000000000000 00111122333 899
Q ss_pred EEecCceEEEcccceeEEEEEEEEEeccCCCCCcccCceEEEeeeEEEEccEEEEEeccccceEEeCCCCCCCcEEEEEE
Q 000108 1929 LVLGPELRIVYPLILNFAVSGEIELNGPSHPKLIKPKGILTFENGDVNLVATQVRLKREHLNIAKFEPEHGLDPMLDLAL 2008 (2184)
Q Consensus 1929 l~LG~dVri~~p~~l~f~l~G~L~l~Gtl~~~~p~~~G~I~l~rG~vnll~t~F~L~rG~~n~a~F~p~~gldP~LDi~A 2008 (2184)
|.++++|+|+.+ .++..+.|+|+|+|++. ..|++.|++++.+|+|++++++|+|++|. |+|.+...++|+|||+|
T Consensus 130 l~~~~~v~v~~~-~~~~~~~G~L~l~g~~~-~~~~l~G~i~l~~G~~~~~~~~F~i~~g~---i~f~g~~~~~P~ldi~a 204 (379)
T PF04357_consen 130 LDLGDNVRVDGP-GLDGRLSGDLNLNGTLA-GPPQLSGSIRLTRGSYNFFGKRFDIDGGT---ITFNGDPPINPYLDITA 204 (379)
T ss_pred EccCCcEEEEcC-ceEEEEEEEEEEEeecC-CCceEEEEEEEEEEEEEEcCCEEEEcccE---EEEcCCCCCCCEEEEEE
Confidence 999999999765 68999999999999954 36999999999999999999999999775 99998665799999999
Q ss_pred EEee---------eEEEEEecCCCCCcceEEeecCCccccCCCHHHHHH-Hhccccccccc--cCCcHHHHHHHHHHHH-
Q 000108 2009 VGSE---------WQFRIQSRGSNWQDKIVVTSTRSMEQDVLSPTEAAR-VLESQLAESIL--EGDGQLAFKKLATATL- 2075 (2184)
Q Consensus 2009 ~t~~---------v~~~V~G~as~~~p~l~LsS~PslpqD~~s~~eils-LL~~~~~~s~~--~gd~~l~l~~LA~aal- 2075 (2184)
.+++ +.++|+|++++ |+++|+|+|+|+| .||++ |+.++...... ..+...++.+++++.+
T Consensus 205 ~~~~~~~~~~~~~i~l~v~G~~~~--p~i~l~S~P~l~~-----~~ilslL~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (379)
T PF04357_consen 205 SYRVQSNGREPVTIGLRVSGPLSN--PNITLSSDPPLSQ-----RQILSLLLFGRSLSDGSSQSNQLTAAASSLLGSLLS 277 (379)
T ss_pred EEEEeccccccEEEEEEEEeEecC--CEEEEEeCCCCCH-----HHHHHHHHcCCCccccchhhhhHHHHHHHHHhhcch
Confidence 9886 56789999995 5799999999955 79999 45555433322 1122223334443222
Q ss_pred ---hhhccccccCCcccceeeEeeecCCCCcccccCCCCCccccccccceeeeEEeeecccceEEEEEEeccccccc-eE
Q 000108 2076 ---ETLMPRIEGKGEFGQARWRLVYAPQIPSLLSVDPTVDPLKSLANNISFGTEVEVQLGKRLQASIVRQMKDSEMA-MQ 2151 (2184)
Q Consensus 2076 ---~~l~~~I~~~~~lGld~~rl~~a~~~p~~~s~d~~~d~~~~~~~~l~~~~evGkyls~~l~vsv~~~l~~~~~~-~q 2151 (2184)
..++..|. ..||+|+|++.+.. ..+ ...... ......+++||||+||+|++|.....-.+.. .+
T Consensus 278 ~~~~~~~~~~~--~~lgld~~~v~~~~----~~~----~~~~~~--~~~~~~~~~gk~l~~~l~i~~~~~~~~~~~~~~~ 345 (379)
T PF04357_consen 278 GILSSLLNRLR--QALGLDNLSVDSGT----SGS----GNTSQN--SESDTSVTVGKYLSDRLYISYQFGVDLGGSQTGE 345 (379)
T ss_pred hhhhHHHHHHH--HhcCCcEEEEecCC----ccC----Ccccee--ccCceEEEEEEecCCCEEEEEEEeecCCCCceEE
Confidence 22223343 78999999997321 100 000000 1234668999999999999999555432323 49
Q ss_pred EEEEEEecccEEEEEEEcCc--c-eEEEEEEe
Q 000108 2152 WTLIYQLTSRLRVLLQSAPS--K-RLLFEYSA 2180 (2184)
Q Consensus 2152 ~~L~Y~Lt~~L~l~~~s~~~--~-~~~~ey~~ 2180 (2184)
++++|+|++++++++.+... . .+-++|+.
T Consensus 346 ~~l~y~l~~~~~l~~~~~~~~~~~g~~l~y~~ 377 (379)
T PF04357_consen 346 FSLEYRLNPNLSLRGSSDSGNTSQGVDLIYRK 377 (379)
T ss_pred EEEEEEEcCCEEEEEEEEcCCCceEEEEEEEE
Confidence 99999999999999999443 3 47777764
No 3
>TIGR02099 conserved hypothetical protein TIGR02099. This model describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane.
Probab=99.83 E-value=3.2e-14 Score=202.14 Aligned_cols=564 Identities=13% Similarity=0.098 Sum_probs=321.5
Q ss_pred cccccccCcccCCCccccceeeeeeccccccccCccceeeeeeeecceeEEEEecCccc-ee---cCccccc-----cce
Q 000108 559 AMFDSISIWPLGLKSSLLSFWGNVRELLSTFLAPFKELKSGVAPNVEDVVAELVDGVYI-VQ---NEGIVKM-----LPF 629 (2184)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~l~~~vt~~~p~~~i~q~~dg~W-i~---~~~~~~~-----f~~ 629 (2184)
+.+..+-..+.|+..++++.+++.+++|+.+ +.-+-...+|++.+|++++++.++|+| +. ....... |=.
T Consensus 67 l~l~~v~i~~~~~~~~~~~~~~~~~~~w~SL-~~~~~~~~~l~l~~~~l~l~r~~~g~~~~~g~~~~~~~~~~~~~~~L~ 145 (1260)
T TIGR02099 67 LELSGVRIGEPDAGQLLVLRVVVALDLWQSL-LHRSPRLADLRVDGLALTLRRDDDGGWAVGGNPLTSNQPDGLLLLLLR 145 (1260)
T ss_pred EEEeceEecCCCCCceEEEEEEEEeeHHHHh-hhCccEEEEEEEeCcEEEEEecccCcccccCCccccccccchHHHHHh
Confidence 3344444445667789999999999999622 233334555999999999999999999 32 1111111 112
Q ss_pred eeceEEEECcEEEEEecCCCCcEEEEeeeeEEEEecccceEEEEEeeeeeccccccccCCCCeEEEEEEEcccc-c--eE
Q 000108 630 VLDSVHFKGGTLMLLAYGDREPREMENASGHVKFQNHYGRVHVQVSGNCKMWRSDTISGDGGWLSADVFVDSIE-Q--QW 706 (2184)
Q Consensus 630 ~l~~V~i~~g~~~L~~~g~~~p~~l~~vnG~v~~~~~~~~i~~dl~G~~~~~~~~~~~~~Gg~l~~~g~~~~~~-q--~~ 706 (2184)
.++.|.|+|+++.+.... ..++.+. ...+.+.|+..+.++++++.+. ...++.|++++.++... + +.
T Consensus 146 ~~~~~~i~~a~l~~~~~~-~~~~~L~--~~~L~~~n~~~~h~~~~~~~l~-------~~~~~~l~~~~~~~~~~~~~~~g 215 (1260)
T TIGR02099 146 QLDRFSLRDSRISVLTPS-GDRLTLE--IPQLRWLNSGLRHRAEGRISLD-------DINHGSLQVRLDWQDDAGLLDNG 215 (1260)
T ss_pred ccCCEEEEccEEEEECCC-CCceEee--ccceEEEECCCceEEEEEEEcc-------ccCCccEEEEEEEccCCCCccce
Confidence 467899999999999875 4677775 4555666778899998888773 11356788888887543 2 34
Q ss_pred EEEEEEeccChhhh-hccccccEEEeeeeeeeEEEEEEeCCCCCceEEEEEEEeeeEEEEcccccceeeeeEEEEEeCc-
Q 000108 707 HGNLKIMNLFVPLF-ERILEIPIMWSKGRATGEVHLCMSTGETFPSLHGQLDITGLAFRIFDAPSSFSDISTSLCFRGQ- 784 (2184)
Q Consensus 707 ~l~l~~~~l~a~~i-~~ll~lPi~i~~G~~dg~l~i~l~~~~~~~~~~G~~~l~~~~~~i~~~p~~~s~i~G~L~f~g~- 784 (2184)
++.+++++++++.+ .+++..|..+.+|++++++-+++++++ ..++.|++++.+++++..+.+++++..+|.+.|+..
T Consensus 216 ~lyl~~~~~dl~~wl~~~~~~~~~l~~G~~~~~~Wl~~~~g~-~~~~~~~l~l~~l~~~~~~~~~~l~~~~g~~~~~~~~ 294 (1260)
T TIGR02099 216 DFYAQADNLDLAPWLSRYMQDNTGLLRGQFSLDAWMSLSHGS-VASGNVDLNPSQLAWSGANRTHTLEVLQGNARWAPTA 294 (1260)
T ss_pred EEEEECCcCChHHhhHHhhccCcCcceeEEEEEEEEEeccCC-eEEEEEEECcccCccccCCCCceEEecCcEEEEEECC
Confidence 68899999999877 455678899999999988888887766 367999999999999999988888877888887654
Q ss_pred ---EEEEeecceeecCccEEEEEEEeecCCCceEEEEEecCccchHHHHhhcccCcc----------cceeeeEEEE-EE
Q 000108 785 ---RIFLHNASGWFGSVPLEASGDFGIHPEEGEFHLMCQVPCVEVNALMRTFKMKPL----------LFPLAGSVTA-VF 850 (2184)
Q Consensus 785 ---~I~l~n~~g~~g~i~v~~~G~i~id~e~g~f~L~~~v~~V~v~~l~~tl~~~~~----------~~plaG~V~a-~~ 850 (2184)
++..+++....++...... .+........ +.++++.+++..+...+..-|. ...-.|.++. .+
T Consensus 295 ~gw~~~~~~l~l~~~~~~w~~~-~~~~~~~~~~--~~~~~~~ldL~~L~~l~~~~~~l~~~~~~~l~~l~P~G~l~~~~l 371 (1260)
T TIGR02099 295 GGWQINAPSLRLNSDGEAWPLL-LLAAAWQPRE--LRVRASRLDLEGLFPLLPLIAALSPALNRWWQGLKPSGGLADVRL 371 (1260)
T ss_pred CCeEEEecceeEeeCCCCCCCC-eeeeccCCcc--eEEEecccchhhhhhhHhhCCCCCHHHHHHHHhcCCceEEeEEEE
Confidence 6666666666665433221 1333333332 4566778888877766554331 2445788877 66
Q ss_pred EEecCCCCcEEEEEEEEeeccccccc-CcchhhHHHHHhhhcccCceEEEe--------------eeeeceeeeeEEEe-
Q 000108 851 NCQGPLDAPIFVGSGMVSRKMSYSVS-DVPVSAAMEAMLKSKEAGAVAAFD--------------RVPFSYVSANFTFN- 914 (2184)
Q Consensus 851 ~v~G~l~~Pv~~G~v~~s~~~~~~~~-~~~~~~a~~a~~~~~~~~~~~~~d--------------rv~f~~isa~f~~~- 914 (2184)
++.++...+.+.+++. . .+..-+ +.|+-.--.+--.-...++.+.++ -+.|+.+++.+.+.
T Consensus 372 ~~~~~~~~~~~~a~l~--~-l~~~~~~~~Pg~~~l~g~~~~~~~~G~~~l~~~~~~l~~p~~f~~pl~~~~~~g~~~w~~ 448 (1260)
T TIGR02099 372 AGAPQDESLRFQASLE--D-LGWQPWELLPGANGLSGTIQGSAEGGELNLPTQTAMLPYPEVFAAPLEIQQAGADLSWKQ 448 (1260)
T ss_pred ecCCCCCCceEEEEee--e-cccccccCCCCccceeEEEEEeccCeEEEEEcccceecCcccccCceEEEcceEEEEEEE
Confidence 7777666666666643 1 111111 111110000000001112222221 13455555555443
Q ss_pred -cccceeeecceeeEEeCCcEEEEEEEEEecCCCccCcceeEEEeeccccccchhccccccccccC--------cccccc
Q 000108 915 -TDNCVADLYGIRASLVDGGEIRGAGNAWICPEGEVDDRAIDVNFSGNVSFDKIAHRYISDYLQLM--------PLKLGD 985 (2184)
Q Consensus 915 -~~~~~~~L~~i~a~~~~GG~I~g~G~~~~~~~~e~~~~a~~v~~sg~l~~~~i~l~~lp~~~~~p--------p~~~G~ 985 (2184)
.+...+++.++++. ..++..++++.+.. +....+.....+.++ ..+... ..+|+|.....+ ....|.
T Consensus 449 ~~~~~~l~~~~l~l~-~~d~~~~~~~~~~~-~~~~~~~l~L~a~l~-~~~~~~-~~~ylP~~~~~~~l~~wL~~al~~G~ 524 (1260)
T TIGR02099 449 DGQGWTLALPKVQVA-NKDLGANGAFRLRF-PGDAAPWMDLRAGIA-DGDAPY-AWRYLPRSLMGEELADWLRTALQAGQ 524 (1260)
T ss_pred CCCeEEEEcCCeEEE-CcceEEcccEEEEc-cCCCCCEEEEEcccc-ccChhH-HHhhCCcccCcHHHHHHHHHHHhCCc
Confidence 23344455666654 55667777777765 322222233332222 112222 245766210001 012455
Q ss_pred e-eEEEEEEeccCCcce-------eeeeccccc----c-c--eeeccceEEEEeeceeEeecceeEEEE-EE-EEEeecC
Q 000108 986 L-SGETKLSGSLLRPRF-------DIKWIAPKA----E-G--SFTDARGAIMISHDCITVSSSSAAFEL-YT-EVQTSYP 1048 (2184)
Q Consensus 986 l-~g~~~lsGsl~~~~~-------~~~~~a~~g----~-G--s~~~a~G~I~is~~~I~v~~~~a~f~~-~g-~v~~~~~ 1048 (2184)
+ ++++.+.|.+..+-+ .++...-.+ . + .++...|++.+.+..+.+....+.+.- .. ++...
T Consensus 525 v~~~~l~~~G~l~~~Pf~~~~g~f~v~~~~~~a~l~~~p~wP~l~~l~g~l~f~~~~l~v~~~~g~l~~~~~~~~~~~-- 602 (1260)
T TIGR02099 525 VDNATLLYAGNLDDFPFPGNDGVFQAFVDLRNAVFAFQPDWPALTDLDGDLLFENEGMSLDASQGDLVGVPASQVTAN-- 602 (1260)
T ss_pred ccceEEEEecchhcCCCCCCCeEEEEEEEecceEEeecCCCCcccCCceEEEEEcCcEEEEcCcceEcCcEeeeeEEE--
Confidence 4 457888888754322 111111011 0 0 224456666666655555544444310 00 01111
Q ss_pred Ccccccccccccccccc-ceee--ceeeeEEec-Cccccccc-cCCCCCCC---CcceeeeEEEEEEEEEeccCCCCccc
Q 000108 1049 DDYWIDRKESDVKGAIP-FTVE--GVDLDLRMR-GFEFFSLV-SYPFDSPR---PTHLKATGKIKFQGKVLKPCSESTVQ 1120 (2184)
Q Consensus 1049 ~~l~l~g~~l~~~~~~p-~~i~--~~dldl~a~-~~~L~~l~-~~pl~~p~---p~~l~l~G~~~f~G~I~G~~~~~~~~ 1120 (2184)
+| +... .+++++.+. .-++..++ .-|+.... -....++|.++.+.++.-+..
T Consensus 603 ---------------Ipdl~~~~l~v~~~~~g~~~~~~l~~l~~sPL~~~~~~~l~~~~~~G~~~~~L~L~iPL~----- 662 (1260)
T TIGR02099 603 ---------------IPDLGEEGLLVIADVQGEDGSAVLGYLIASPLKDSLGGTLAELQVGGPVAGKLKLDIPLA----- 662 (1260)
T ss_pred ---------------CCCCCCCceEEEEEeecccHHHHHHHHHhCCCcchHHHhhhheEECceEeEEEeEecccC-----
Confidence 11 0111 122333333 22444444 34553211 123456777777777655532
Q ss_pred ccCCcchhhhcccCCcccEEEEEEEcceeee----ceeecceeeeeEEeecce-----EEEEecCCcc
Q 000108 1121 NFDSDKNMEMTNKANKQSLVGEVSVSGLKLN----QLTLAPQLVGPLSISRDH-----IKMDATGRPD 1179 (2184)
Q Consensus 1121 ~~~~~~~~~~~~~~~~p~l~G~v~L~nl~vn----~l~fe~~L~G~l~~~~~~-----l~L~l~G~~D 1179 (2184)
.+..+.+.|++.+.|.++. .+.++. ++|.+.++.++ ++..+-|.+.
T Consensus 663 ------------~~~~~~v~g~~~l~~~~l~i~~~~~~l~~-~~G~l~f~~~gl~~~~l~a~~~G~Pv 717 (1260)
T TIGR02099 663 ------------GGVETKVRGDVVLQNNALRIAPPVLELTQ-VSGKFEFDNGGVSAKGLKARAFGQPL 717 (1260)
T ss_pred ------------CCCccEEEEEEEeCCCEEEecCCCcchhh-cEEEEEEeCCCEEcccceeeecCCCE
Confidence 1124589999999998774 356666 89999999764 4444555554
No 4
>TIGR02099 conserved hypothetical protein TIGR02099. This model describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane.
Probab=99.67 E-value=7e-13 Score=188.69 Aligned_cols=278 Identities=15% Similarity=0.198 Sum_probs=187.6
Q ss_pred CCcEEEEeeeeEEEEecccceEEEEEeeeeeccccccccCCCCeEEEEEEEcccc---ceEEEEEEEeccChhhhhcccc
Q 000108 649 REPREMENASGHVKFQNHYGRVHVQVSGNCKMWRSDTISGDGGWLSADVFVDSIE---QQWHGNLKIMNLFVPLFERILE 725 (2184)
Q Consensus 649 ~~p~~l~~vnG~v~~~~~~~~i~~dl~G~~~~~~~~~~~~~Gg~l~~~g~~~~~~---q~~~l~l~~~~l~a~~i~~ll~ 725 (2184)
.+|+.++.++|.+....++..+++.+..-- .....+..++.+.+.... ...++...++..++..+.+++|
T Consensus 432 ~~pl~~~~~~g~~~w~~~~~~~~l~~~~l~-------l~~~d~~~~~~~~~~~~~~~~~~l~L~a~l~~~~~~~~~~ylP 504 (1260)
T TIGR02099 432 AAPLEIQQAGADLSWKQDGQGWTLALPKVQ-------VANKDLGANGAFRLRFPGDAAPWMDLRAGIADGDAPYAWRYLP 504 (1260)
T ss_pred cCceEEEcceEEEEEEECCCeEEEEcCCeE-------EECcceEEcccEEEEccCCCCCEEEEEccccccChhHHHhhCC
Confidence 578999999999887655556665544211 111234445555554321 2345555567788888888888
Q ss_pred ---c-c-------EEEeeeeee-eEEEEEEeCCCCCc------eEEEEEEEeeeEEEEcc-cccceeeeeEEEEEeCcEE
Q 000108 726 ---I-P-------IMWSKGRAT-GEVHLCMSTGETFP------SLHGQLDITGLAFRIFD-APSSFSDISTSLCFRGQRI 786 (2184)
Q Consensus 726 ---l-P-------i~i~~G~~d-g~l~i~l~~~~~~~------~~~G~~~l~~~~~~i~~-~p~~~s~i~G~L~f~g~~I 786 (2184)
+ | -.+.+|+++ +.+.++-...+ +| .|+-.+.++++.+++.. .| .|++++|++.|+++++
T Consensus 505 ~~~~~~~l~~wL~~al~~G~v~~~~l~~~G~l~~-~Pf~~~~g~f~v~~~~~~a~l~~~p~wP-~l~~l~g~l~f~~~~l 582 (1260)
T TIGR02099 505 RSLMGEELADWLRTALQAGQVDNATLLYAGNLDD-FPFPGNDGVFQAFVDLRNAVFAFQPDWP-ALTDLDGDLLFENEGM 582 (1260)
T ss_pred cccCcHHHHHHHHHHHhCCcccceEEEEecchhc-CCCCCCCeEEEEEEEecceEEeecCCCC-cccCCceEEEEEcCcE
Confidence 3 2 256789988 66666543222 33 78999999999999994 45 7999999999999999
Q ss_pred EEeecceeecCccEEEEEEEeec-CCCceEEEEEecCccchHHHHhhcccCcc---------cceeeeEEEEEEEEecCC
Q 000108 787 FLHNASGWFGSVPLEASGDFGIH-PEEGEFHLMCQVPCVEVNALMRTFKMKPL---------LFPLAGSVTAVFNCQGPL 856 (2184)
Q Consensus 787 ~l~n~~g~~g~i~v~~~G~i~id-~e~g~f~L~~~v~~V~v~~l~~tl~~~~~---------~~plaG~V~a~~~v~G~l 856 (2184)
.+..-++.+.++++.-. ++.+. .......+.+.+.+=+..++++.+.-.|+ ++-++|.+++++++.=|+
T Consensus 583 ~v~~~~g~l~~~~~~~~-~~~Ipdl~~~~l~v~~~~~g~~~~~~l~~l~~sPL~~~~~~~l~~~~~~G~~~~~L~L~iPL 661 (1260)
T TIGR02099 583 SLDASQGDLVGVPASQV-TANIPDLGEEGLLVIADVQGEDGSAVLGYLIASPLKDSLGGTLAELQVGGPVAGKLKLDIPL 661 (1260)
T ss_pred EEEcCcceEcCcEeeee-EEECCCCCCCceEEEEEeecccHHHHHHHHHhCCCcchHHHhhhheEECceEeEEEeEeccc
Confidence 99999999988765422 23332 12211334444433116788888876666 777899999988877776
Q ss_pred C---CcEEEEEEEEeecccccccCcchhhHHHHHhhhcccCceEEEee--eeeceeeeeEEEecccceeeecceeeEEeC
Q 000108 857 D---APIFVGSGMVSRKMSYSVSDVPVSAAMEAMLKSKEAGAVAAFDR--VPFSYVSANFTFNTDNCVADLYGIRASLVD 931 (2184)
Q Consensus 857 ~---~Pv~~G~v~~s~~~~~~~~~~~~~~a~~a~~~~~~~~~~~~~dr--v~f~~isa~f~~~~~~~~~~L~~i~a~~~~ 931 (2184)
. ++.+.|++...+. .+.+.. .+|++++..|.|+.+.+. .++++|. ..
T Consensus 662 ~~~~~~~v~g~~~l~~~-------------------------~l~i~~~~~~l~~~~G~l~f~~~gl~--~~~l~a~-~~ 713 (1260)
T TIGR02099 662 AGGVETKVRGDVVLQNN-------------------------ALRIAPPVLELTQVSGKFEFDNGGVS--AKGLKAR-AF 713 (1260)
T ss_pred CCCCccEEEEEEEeCCC-------------------------EEEecCCCcchhhcEEEEEEeCCCEE--cccceee-ec
Confidence 5 5778888765521 233333 579999999999976655 8888997 89
Q ss_pred CcEEEEEEEEEecCCCccCcceeEEEeeccccccchh
Q 000108 932 GGEIRGAGNAWICPEGEVDDRAIDVNFSGNVSFDKIA 968 (2184)
Q Consensus 932 GG~I~g~G~~~~~~~~e~~~~a~~v~~sg~l~~~~i~ 968 (2184)
|+-++....-.. ....+.++++++|.++...+.
T Consensus 714 G~Pv~l~~~~~~----~~~~~~~~i~~~G~~~~~~l~ 746 (1260)
T TIGR02099 714 GQPLRLSFATED----KKKAFVVRLDANGDWTVKKLG 746 (1260)
T ss_pred CCCEEEEEEecc----cCCCeeEEEeeeceechHHcc
Confidence 999988876421 123456677777667676664
No 5
>PRK10899 hypothetical protein; Provisional
Probab=99.20 E-value=7.8e-07 Score=124.38 Aligned_cols=272 Identities=14% Similarity=0.083 Sum_probs=186.5
Q ss_pred CCcEEEEeeeeEEEEecccceEEEEEeeeeeccccccccCCCCeEEEEEE--Eccc-cceEEEEEE--EeccChhhhhcc
Q 000108 649 REPREMENASGHVKFQNHYGRVHVQVSGNCKMWRSDTISGDGGWLSADVF--VDSI-EQQWHGNLK--IMNLFVPLFERI 723 (2184)
Q Consensus 649 ~~p~~l~~vnG~v~~~~~~~~i~~dl~G~~~~~~~~~~~~~Gg~l~~~g~--~~~~-~q~~~l~l~--~~~l~a~~i~~l 723 (2184)
.+|+.++.++|.+.+..+.+.+++....--. .+-.+.+.|. +... .+.-.+.|. +...++..+.++
T Consensus 198 ~~pl~~~~~~g~~~W~~~~~~~~l~~~~l~~---------~~~d~~~~g~f~~~~~~~~~~~ldL~~~~~~~da~~~~rY 268 (1022)
T PRK10899 198 RAPLEIAQGSGTLSWLNNDKGFQLWGRDLDV---------QAKSLWARGDFRYLQPANDEPWLGILAGIRLDDAGDAWRY 268 (1022)
T ss_pred cCceEeecceEEEEEEECCCeEEEEeCCeEE---------ECCceeecceEEEEcCCCCCCeeeeeccccccchhhhhhh
Confidence 6789999999999998776766654443111 1223344554 3221 122234444 588888888999
Q ss_pred cccc-----------EEEeeeeee-eEEEEEE--eC---CCCCceEEEEEEEeeeEEEEcccccceeeeeEEEEEeCcEE
Q 000108 724 LEIP-----------IMWSKGRAT-GEVHLCM--ST---GETFPSLHGQLDITGLAFRIFDAPSSFSDISTSLCFRGQRI 786 (2184)
Q Consensus 724 l~lP-----------i~i~~G~~d-g~l~i~l--~~---~~~~~~~~G~~~l~~~~~~i~~~p~~~s~i~G~L~f~g~~I 786 (2184)
+|.+ -.|.+|+++ +.+.++= .+ .+....|+-.+.++++.+++..-=-.+++++|+|.|.+..|
T Consensus 269 lP~~~m~~~l~~wL~~Ai~~G~v~~a~~~~~G~l~~fPf~~~~G~Fqv~~~v~da~l~f~p~WP~l~~l~g~l~f~n~~l 348 (1022)
T PRK10899 269 FPEPLMGKDLVDYLSGAIQGGQVDNATLVYGGNPHLFPYKHNEGQFQVLVPLRNATFAFQPDWPALTNLDIDLNFLNDGL 348 (1022)
T ss_pred CCccccCHHHHHHHHHHHhcCeecceEEEEecCcccCCccCCCcEEEEEEEecccEEecCCCCCCcccCceEEEEEcCcE
Confidence 8855 267899998 7776662 21 11123699999999999999963336889999999999999
Q ss_pred EEeecceeecCccEE-EEEEEeecCCCceEEEEEecCccchHHHHhhcccCcc---------cceeeeEEEEEEEEecCC
Q 000108 787 FLHNASGWFGSVPLE-ASGDFGIHPEEGEFHLMCQVPCVEVNALMRTFKMKPL---------LFPLAGSVTAVFNCQGPL 856 (2184)
Q Consensus 787 ~l~n~~g~~g~i~v~-~~G~i~id~e~g~f~L~~~v~~V~v~~l~~tl~~~~~---------~~plaG~V~a~~~v~G~l 856 (2184)
.+..-++.++++++. ++..| -|.....+.+.+++.+ +..++++.+.-.|+ .+-++|.+++.+++.=|+
T Consensus 349 ~i~~~~g~l~~v~~~~v~~~I-pd~~~~~L~I~g~~~g-~~~~~l~~l~~SPL~~~~g~~l~~~~~~G~~~~~L~L~IPL 426 (1022)
T PRK10899 349 WMKAPQVKLGGVRASNLSAVI-PDYSKEKLLIDADIKG-PGKAVGDYFDETPLKDSLGATLDELQLGGDVNGRLHLDIPL 426 (1022)
T ss_pred EEEcCceEEcCeecceeEEEC-CCCCCCeEEEEEEeeC-CHHHHHHHHHhCCCcchhhhhhhheEEcceeeEEEeEEeec
Confidence 999999999887654 23222 1334455667776665 66677777765554 566778888877766555
Q ss_pred C--CcEEEEEEEEeecccccccCcchhhHHHHHhhhcccCceEEEee--eeeceeeeeEEEecccceeeecceeeEEeCC
Q 000108 857 D--APIFVGSGMVSRKMSYSVSDVPVSAAMEAMLKSKEAGAVAAFDR--VPFSYVSANFTFNTDNCVADLYGIRASLVDG 932 (2184)
Q Consensus 857 ~--~Pv~~G~v~~s~~~~~~~~~~~~~~a~~a~~~~~~~~~~~~~dr--v~f~~isa~f~~~~~~~~~~L~~i~a~~~~G 932 (2184)
. .+.+.|++...+. .+.++. ++|++++..|+|+.+.+. .++++|. ..|
T Consensus 427 ~~~~~~v~G~v~l~~n-------------------------~l~i~~~~~~l~~v~G~l~F~~~~l~--~~~l~a~-~~G 478 (1022)
T PRK10899 427 DGELVTASGEVTLRNN-------------------------SLFIKPLDSTLKNLSGKFRFDNGNLQ--SDPLSAN-WFG 478 (1022)
T ss_pred CCCceeEEEEEEeCCC-------------------------eEEccCCCCChhhcEEEEEEeCCcee--cccceEE-ecC
Confidence 4 6778888765421 344454 569999999999988744 8999998 999
Q ss_pred cEEEEEEEEEecCCCccCcceeEEEeecccc
Q 000108 933 GEIRGAGNAWICPEGEVDDRAIDVNFSGNVS 963 (2184)
Q Consensus 933 G~I~g~G~~~~~~~~e~~~~a~~v~~sg~l~ 963 (2184)
|-|+.+..-.. ..+.+..++++++..+
T Consensus 479 ~pv~~~~~t~~----~~~~~~v~v~~~g~~~ 505 (1022)
T PRK10899 479 QPLNVDFSTKE----GAKAYQVAVNLNGDWQ 505 (1022)
T ss_pred CcEEEEEeccc----cCcceEEEEEeecccc
Confidence 99999876522 2345667777765544
No 6
>COG2911 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.08 E-value=8.2e-07 Score=123.25 Aligned_cols=76 Identities=11% Similarity=0.015 Sum_probs=65.1
Q ss_pred ccceeEEEEEEEEEeccCCCCceEEEEEecCcccccc----ceeeeEEEEEEEecCCcEEEeeEEEEeCCeEEEEeeecc
Q 000108 1425 LAEFKGRWRGSLDASGGGNGDTMAEFDFHGEDWEWGT----YRTQRVLAVGAYSNDDGLRLEKMFIQKDNATIHADGTLL 1500 (2184)
Q Consensus 1425 l~~L~G~~~G~i~l~Gt~~~~P~~~~dl~G~~w~wg~----y~l~~v~a~g~~~~n~~L~L~~l~l~~g~g~l~asGt~~ 1500 (2184)
...++|.+++.++++|+ +..|.+.+.++.++..+.. ..+++..+..+|. ++..+|+.......+|++.++|+++
T Consensus 877 g~~~~G~lna~l~l~Gt-~~~P~l~G~~~~~g~~~~~~~~~l~l~~g~l~~~~~-g~~~~l~~~~~~~~~G~l~~sG~v~ 954 (1278)
T COG2911 877 GEKLSGRLNANLSLGGT-LQAPQLGGQVTLDGIRIDDNSMPLDLTNGQLRVNFA-GNRSTLSGSGKLTGDGTLNLSGTVS 954 (1278)
T ss_pred CcccceEEEEEEEeccc-cCCCeeccEEEecCceeecCccceeEecCeEEEEeC-CceeEeecceEEcCCceEEeecccc
Confidence 55799999999999999 9999999999999887765 4478888899998 7889999855566789999999986
Q ss_pred CC
Q 000108 1501 GP 1502 (2184)
Q Consensus 1501 ~~ 1502 (2184)
-.
T Consensus 955 ~~ 956 (1278)
T COG2911 955 WS 956 (1278)
T ss_pred cc
Confidence 44
No 7
>PRK10833 putative assembly protein; Provisional
Probab=98.97 E-value=2.6e-07 Score=123.54 Aligned_cols=406 Identities=12% Similarity=0.089 Sum_probs=239.2
Q ss_pred ccccceeeeeeccccccccCccceeeeeeeecceeEEEEecCccc-----eecCcc-------ccccceeeceEEEECcE
Q 000108 573 SSLLSFWGNVRELLSTFLAPFKELKSGVAPNVEDVVAELVDGVYI-----VQNEGI-------VKMLPFVLDSVHFKGGT 640 (2184)
Q Consensus 573 ~~~~~~~~v~~~~l~~~l~~~~~l~~~vt~~~p~~~i~q~~dg~W-----i~~~~~-------~~~f~~~l~~V~i~~g~ 640 (2184)
-+.++.+++.+++|+ |++-+--+.+|.++.|+++++.+.+|.| ..+... ....++.++.|+|+||+
T Consensus 79 ~~~~~~~~~~v~l~P--LL~g~v~i~~v~L~~p~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~I~dg~ 156 (617)
T PRK10833 79 VVSADNMRLDVALWP--LLSHQLSVKQVMLKGAVIRLTPDSEAQRSEDAPVAPKGNTLPDVSDDRGWSFDISSLKVADSL 156 (617)
T ss_pred eeEcccceEEEEEec--cccCceEEEEEEEcCcEEEEEEcccccCCCCCCCCCCcCCCCCCCcccCceEEeccEEEEccE
Confidence 679999999999999 7788889999999999999999988875 211110 11245789999999999
Q ss_pred EEEEecCCCCcEEEEeeeeEEEEecccceEEEEEeeeeec----------------------------ccccc----c--
Q 000108 641 LMLLAYGDREPREMENASGHVKFQNHYGRVHVQVSGNCKM----------------------------WRSDT----I-- 686 (2184)
Q Consensus 641 ~~L~~~g~~~p~~l~~vnG~v~~~~~~~~i~~dl~G~~~~----------------------------~~~~~----~-- 686 (2184)
+..... ..+.+.++++|.++... ....+.++++|.+.. ++... +
T Consensus 157 l~~~d~-~g~~~~~~~lnl~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~lp~ 234 (617)
T PRK10833 157 LIWQHE-DDEQINVRDINLQMEQD-AQRQVSVEFSSRVNRDQRDLTLSLNATVDASDYPHQLTANIEQLDYQLQGADLPA 234 (617)
T ss_pred EEEEeC-CCCEEEEEEeEEecCCC-CceeEEEEEeeeecccccccEEEEEEEEEcccChhhhhhHHHhHHhhccCCCCCC
Confidence 999866 36788899888877644 334556666554310 00000 0
Q ss_pred cCCCCeEEEEEEEcccc----------------------------ceEEEEEEEeccChhhhhccccccEE----Eeee-
Q 000108 687 SGDGGWLSADVFVDSIE----------------------------QQWHGNLKIMNLFVPLFERILEIPIM----WSKG- 733 (2184)
Q Consensus 687 ~~~Gg~l~~~g~~~~~~----------------------------q~~~l~l~~~~l~a~~i~~ll~lPi~----i~~G- 733 (2184)
..-.+.+++++.+.... ..++++|+++.|++..+......+-. -.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~s~l~G~~~~~~~~~P~i~~~L~~~~lDLd~~l~~~~~~~~~~~~~~~~~ 314 (617)
T PRK10833 235 QGISGQGSLQAQWQESPKRLSLNQLNLTANDSQLSGSASVTLGEKPEYQLDLQSDKLNLDNLLGLQPLANDENGAQQGQS 314 (617)
T ss_pred cCccceEEEEEEEecCCCeEEEeccceeeccceeeeEEEEEcCCCCeEEEEeccCccchhhcCCCccccccccccccccc
Confidence 00011111211111111 12334444444444443322110000 0000
Q ss_pred ------eeeeEEEEEEeCCCCCceEEEEEEEeeeEEEEcccccceeeeeEEEEEeCcEEEEeecceeecCccEEEEEEEe
Q 000108 734 ------RATGEVHLCMSTGETFPSLHGQLDITGLAFRIFDAPSSFSDISTSLCFRGQRIFLHNASGWFGSVPLEASGDFG 807 (2184)
Q Consensus 734 ------~~dg~l~i~l~~~~~~~~~~G~~~l~~~~~~i~~~p~~~s~i~G~L~f~g~~I~l~n~~g~~g~i~v~~~G~i~ 807 (2184)
..-..|.-..-+-+....+++.++++=..+.+.+++ ++++.+.+..++..+.++.+++.+.+=.+.++|.++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~L~~ld~~l~l~a~~l~~~~~~--l~~~~~~l~~~~G~l~l~~l~~~l~gG~l~~~g~ld 392 (617)
T PRK10833 315 QPTLPRPVIASRIDSEPAYQGLRDFTADLTLQADNVRYRGMN--FTQVALQATNQQGLLTITTLSGKLGGGDFSLPGTLD 392 (617)
T ss_pred CCCCCCCccccCcCCCCChhHHhcCCcceEEEECeEEECCcc--hhhheeeeeccCCeEEEeeccceecCceEEeEEEEE
Confidence 000000000000001124667777776777778888 999999999999999999988776333888888887
Q ss_pred ecCCCceEEEEEecCccchHHHHhhcccCcccceeeeEEEEEEEEecCCCC-----cEEEEEEEEeecccc-cccCcchh
Q 000108 808 IHPEEGEFHLMCQVPCVEVNALMRTFKMKPLLFPLAGSVTAVFNCQGPLDA-----PIFVGSGMVSRKMSY-SVSDVPVS 881 (2184)
Q Consensus 808 id~e~g~f~L~~~v~~V~v~~l~~tl~~~~~~~plaG~V~a~~~v~G~l~~-----Pv~~G~v~~s~~~~~-~~~~~~~~ 881 (2184)
.....+.|++..++.+|++..++..+... -+++|.+..+++++|.... -.+.|++...-..+. ...+- ..
T Consensus 393 ~~~~~p~~~~~~~~~~v~l~~ll~~l~~~---~~l~G~~~~~~~l~g~G~s~~~l~~sL~G~~~~~~~~G~i~G~nl-~~ 468 (617)
T PRK10833 393 ATGASPRITFQPRLKNVELGPLLKAFNLP---ISLTGKLSLAGDFSGAGIDAAAFRHQWQGQAHVSMDNARLEGLNI-QQ 468 (617)
T ss_pred ccCCCceEEEccccCCcChHHHHHhccCC---cCceeEEEEEEEEEeCCCCHHHHHHhCCCeEEEEEecceEecCCH-HH
Confidence 76677889999999999999999988743 3689999999999987652 234555444421111 11111 11
Q ss_pred hHHHHHhhhccc-CceEEE-eeeeeceeeeeEEEecccceeeecceeeEEeCCcEEEEEEEEEecCCCccCcceeEEEee
Q 000108 882 AAMEAMLKSKEA-GAVAAF-DRVPFSYVSANFTFNTDNCVADLYGIRASLVDGGEIRGAGNAWICPEGEVDDRAIDVNFS 959 (2184)
Q Consensus 882 ~a~~a~~~~~~~-~~~~~~-drv~f~~isa~f~~~~~~~~~~L~~i~a~~~~GG~I~g~G~~~~~~~~e~~~~a~~v~~s 959 (2184)
...+|++..... ...... ...+|+.+.+.|++.++.+ +++++.+. ...-+++|+|.+++. .+.-+|.+++.+.
T Consensus 469 ~l~~a~~~~~~~~~~~~~~~~~T~f~~l~~~~~i~~Gv~--~~~~l~l~-s~~~~~~g~G~vdL~--~~~lD~~l~~~~~ 543 (617)
T PRK10833 469 LIQQAVERSGGDVKAQENYDNYTRLDRLTADLTLNRGVL--TLNDLQGQ-SSLLALTGSGQLNLP--KQQCDVNFNVRVT 543 (617)
T ss_pred HHHHHHHhhcCCccccccccCCCChhhEEEEEEEeCCEE--EcCccccc-ccceEEecceeeccc--cccccEEEEEEEe
Confidence 122233222100 001111 3378999999999987774 48888876 667778888888763 2233333333332
Q ss_pred ccccccchhccccccccccCcccccceeEEEEEEeccCCcceeee
Q 000108 960 GNVSFDKIAHRYISDYLQLMPLKLGDLSGETKLSGSLLRPRFDIK 1004 (2184)
Q Consensus 960 g~l~~~~i~l~~lp~~~~~pp~~~G~l~g~~~lsGsl~~~~~~~~ 1004 (2184)
+.+....=.. .....+..-++|+|++.+|.+.+.
T Consensus 544 ~~~~g~~~~~-----------~~l~~~~vPv~i~G~~~~P~~~~D 577 (617)
T PRK10833 544 GGWNGDSKLI-----------DFLQETPVPLRVYGNWQQLNYQLQ 577 (617)
T ss_pred ccccCCchhh-----------HHhhCCeeeEEEEEECCCceEeec
Confidence 2111111000 011235566889999988876443
No 8
>PRK10899 hypothetical protein; Provisional
Probab=98.74 E-value=0.0031 Score=89.13 Aligned_cols=114 Identities=15% Similarity=0.133 Sum_probs=78.0
Q ss_pred EEEecCccccccceeeeEEEEEEEecCCcEEEeeEEEEeCCeEEEEeeeccCC----CcceeEEEeccccccchhhcccc
Q 000108 1450 FDFHGEDWEWGTYRTQRVLAVGAYSNDDGLRLEKMFIQKDNATIHADGTLLGP----KSNLHFAVLNFPVSLVPTVVQVI 1525 (2184)
Q Consensus 1450 ~dl~G~~w~wg~y~l~~v~a~g~~~~n~~L~L~~l~l~~g~g~l~asGt~~~~----~~~~~l~v~n~pL~ll~~~v~~~ 1525 (2184)
+++..++..++++.+.++.+..+=. +++++|+++.+..+++++.++|.+... .+.+++.++-=+++.+...++..
T Consensus 751 ldl~v~~~~~~g~~lG~l~l~~~~~-~~~~~l~~~~l~~~~~~l~~~G~W~~~~~~~~T~l~~~l~~~d~g~ll~~~G~~ 829 (1022)
T PRK10899 751 LQLRCAECWLWGQKLGRIDGDLTPE-GDTLTLTNGLIDTGFARLTASGEWVNNPGGERTSLKGKLSGQKIDEAASFFGVT 829 (1022)
T ss_pred eeEEEeEEEECCEEcceEEEEEEEc-CCEEEEeeeeeeCCCeEEEEEEEEeeCCCCCeEEEEEEEeCcCHHHHHHHcCCC
Confidence 3556678889999999999888887 789999999999999999999998432 22344444433333444433320
Q ss_pred cccchhhhhhccccccceEEEEEEEEEEeeccCCCE-----EEEEEEEeCeeeecc
Q 000108 1526 ESSATDAIHSLRQLLAPIRGILHMEGDLRGNLAKPE-----CDVQVRLLDGAIGGI 1576 (2184)
Q Consensus 1526 ~~~~~d~~~~l~~~~~~l~G~Ln~~~~L~Gtl~~P~-----~~~~l~l~dg~i~g~ 1576 (2184)
.+ -..-+|++++++.+.|++..+. .+.++++.+|.+..+
T Consensus 830 -----~~-------i~~~~~~l~~~l~W~G~P~~~~~~~L~G~l~~~l~~G~~~~v 873 (1022)
T PRK10899 830 -----TP-------IRNSSFNVDYDLHWRGAPWQPDEATLNGILKTRLGKGEITDL 873 (1022)
T ss_pred -----Cc-------ccCCCEEEEEEEEcCCCCcccchhhCCCEEEEEECCeeEeec
Confidence 01 1245778888888999886644 355566777777643
No 9
>COG3164 Predicted membrane protein [Function unknown]
Probab=98.64 E-value=0.00018 Score=96.16 Aligned_cols=258 Identities=10% Similarity=-0.031 Sum_probs=154.6
Q ss_pred cccccCcccCCC--ccccceeeeeeccccccccCccceeeeeeeecceeEEEEecCccc-eec-C-cccc----ccceee
Q 000108 561 FDSISIWPLGLK--SSLLSFWGNVRELLSTFLAPFKELKSGVAPNVEDVVAELVDGVYI-VQN-E-GIVK----MLPFVL 631 (2184)
Q Consensus 561 ~~~~~~~~~~~~--~~~~~~~~v~~~~l~~~l~~~~~l~~~vt~~~p~~~i~q~~dg~W-i~~-~-~~~~----~f~~~l 631 (2184)
+...-+..-+|+ ++++..+++.++.|+-+ +--+-.+-..|. .=++.+.....|.| +.. + .+.+ -|=-.+
T Consensus 68 l~aq~I~a~~~~g~~l~~~rV~la~d~wqSL-l~~q~~f~dLt~-g~~L~lr~~~~g~~s~~g~~~~~~~~~~d~fLrQ~ 145 (1271)
T COG3164 68 LEAQDIRAGDPDGGRLSAARVTLALDVWQSL-LHRQWQFRDLTF-GLQLTLRRDTTGAWSVNGGDGREDGRLSDLFLRQL 145 (1271)
T ss_pred eEEeeeeccCCccceeeeeeeeehHHHHhhh-hccceeeeeeec-ceEEEEecCCcccccccCCCCcccCchhHHHHhhc
Confidence 333444556777 88888889999999855 333334445555 77888888899999 222 1 1111 132346
Q ss_pred ceEEEECcEEEEEecCCCCcEEEEeeeeEEEEecccceEEEEEeeeeeccccccccCCC--CeEEEEEEEcccc---ceE
Q 000108 632 DSVHFKGGTLMLLAYGDREPREMENASGHVKFQNHYGRVHVQVSGNCKMWRSDTISGDG--GWLSADVFVDSIE---QQW 706 (2184)
Q Consensus 632 ~~V~i~~g~~~L~~~g~~~p~~l~~vnG~v~~~~~~~~i~~dl~G~~~~~~~~~~~~~G--g~l~~~g~~~~~~---q~~ 706 (2184)
+.+.++|+.+..++.+ ....++..+.-+..= ..-|-+.+.+.... +-+| +.+.+++..+... ..+
T Consensus 146 d~fdlrds~is~lt~s-~~~a~L~~~~ltw~n--~~~Rhraeg~~sla-------~l~gq~g~~~vr~d~~dd~~~rs~g 215 (1271)
T COG3164 146 DRFDLRDSALSFLTPS-GPRAELAIPQLTWLN--SPLRHRAEGDVSLA-------GLNGQHGVLQVRMDLRDDDGLRSNG 215 (1271)
T ss_pred CceeeecceEEEecCC-Cchhhhcccceeeec--CCccceeeeeeeec-------cccCCCceEEEeeEeecccCcccCc
Confidence 7899999999999987 455666666655542 22222222221111 1135 6666666655443 347
Q ss_pred EEEEEEeccChh-hhhccccccEEEeeeeeeeEEEEEEeCCCCCceEEEEEEEee--eEEEEcccccceeeee-EEEEEe
Q 000108 707 HGNLKIMNLFVP-LFERILEIPIMWSKGRATGEVHLCMSTGETFPSLHGQLDITG--LAFRIFDAPSSFSDIS-TSLCFR 782 (2184)
Q Consensus 707 ~l~l~~~~l~a~-~i~~ll~lPi~i~~G~~dg~l~i~l~~~~~~~~~~G~~~l~~--~~~~i~~~p~~~s~i~-G~L~f~ 782 (2184)
.+.+.++++++. ++.+-++--..++.|+...+--+++++++ -.+|.+.++. +.++....+..+..-. +.+.++
T Consensus 216 rvy~~a~~~d~~~WL~r~l~~~~~l~~a~~sl~~W~~l~~g~---v~rg~v~l~~~q~~~~~~~~~~~~~~dlq~~~~~~ 292 (1271)
T COG3164 216 RVYLQADNIDLKPWLGRWLQDNTGLQTAQFSLDAWATLSKGE---VTRGDVRLKQGQASWQGGVQTHVLSVDLQLLVEIQ 292 (1271)
T ss_pred eEEEecChhhHHHHHHHhhhcccceecceeeeeEEEEecCCc---eeeeEEEEecccceeecCCCCceEeeccceEEEec
Confidence 888999998865 44455666688998888866666676665 5788888875 5555545554554333 555554
Q ss_pred C----cEEEEeecceeecCccEE-EEEEEeecCC--Cc---eEEEEEecCccchHHHHhhc
Q 000108 783 G----QRIFLHNASGWFGSVPLE-ASGDFGIHPE--EG---EFHLMCQVPCVEVNALMRTF 833 (2184)
Q Consensus 783 g----~~I~l~n~~g~~g~i~v~-~~G~i~id~e--~g---~f~L~~~v~~V~v~~l~~tl 833 (2184)
- =++....++..+++.+-- ..+.+...++ .| .=++.++...+++..++..+
T Consensus 293 R~~~GWqv~ap~lr~~~dg~~w~~~~l~~~~~p~~~~~~~~~~~l~i~a~~ldL~~l~~~i 353 (1271)
T COG3164 293 REAPGWQVVAPDLRLTLDGQLWPLGALTLLWLPEQDVGRENHKELRIRASNLDLAPLEPLI 353 (1271)
T ss_pred ccCCCeeEeccccccCCCCccccccccccccCcccccccccchhhhcccccccchhhhhhh
Confidence 3 256667777777764322 2223344566 22 11345567777777776433
No 10
>PF13502 AsmA_2: AsmA-like C-terminal region
Probab=98.56 E-value=4.2e-06 Score=96.91 Aligned_cols=192 Identities=18% Similarity=0.198 Sum_probs=141.5
Q ss_pred EEeeeeEEEEecccceEEE-EEeeeeeccccccccCCCCeEEEEEEEcccc--ceEEEEEEEeccChhhhhccccccEEE
Q 000108 654 MENASGHVKFQNHYGRVHV-QVSGNCKMWRSDTISGDGGWLSADVFVDSIE--QQWHGNLKIMNLFVPLFERILEIPIMW 730 (2184)
Q Consensus 654 l~~vnG~v~~~~~~~~i~~-dl~G~~~~~~~~~~~~~Gg~l~~~g~~~~~~--q~~~l~l~~~~l~a~~i~~ll~lPi~i 730 (2184)
|+++++.+.+. ++.+.+ ++++++. ||.++++|.++... ..+++.++++++++..+...+..+-.+
T Consensus 1 l~~v~~~~~~~--~~~l~l~~l~~~~~----------gg~~~~~g~~~~~~~~~~~~~~~~l~~~dl~~l~~~~~~~~~l 68 (220)
T PF13502_consen 1 LGDVSADARLQ--DGSLSLDNLSANLF----------GGTLSGSGSLDADGGPPSFSLDLKLNNVDLGQLLKAFGKPGPL 68 (220)
T ss_pred CceEEEEEEEe--CCEEEEEEEEEEcC----------CeEEEEEEEEEeCCCCcEEEEEEEEEcCCHHHHHHhcCccccc
Confidence 46788899877 458888 8898884 89999999999975 368999999999999999887755445
Q ss_pred eeeeeeeEEEEEEeC---CCCCceEEEEEEEeeeEEEEcc--------------------cccceeeeeEEEEEeCcEEE
Q 000108 731 SKGRATGEVHLCMST---GETFPSLHGQLDITGLAFRIFD--------------------APSSFSDISTSLCFRGQRIF 787 (2184)
Q Consensus 731 ~~G~~dg~l~i~l~~---~~~~~~~~G~~~l~~~~~~i~~--------------------~p~~~s~i~G~L~f~g~~I~ 787 (2184)
.|+++.++++.... .....++.|++++.-....+.+ -+..|.++++.+.++++++.
T Consensus 69 -~G~~~~~~~l~~~~~~~~~~~~~l~G~~~~~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~ 147 (220)
T PF13502_consen 69 -SGKLDLDGSLSGPGNSWEPLINSLNGKGSFSVRNGKLNGIPILRDLDAAVTLNFSALKGGDLKFDDLSGDFSIKDGRLR 147 (220)
T ss_pred -cceEEEEEEEcccCccchhhhhceeeEEEEeccceEEeCCccccchhhhhcccccccccCCccccEEEEEEEEECCEEE
Confidence 88988777776531 2223568887777754444444 23468999999999999999
Q ss_pred EeecceeecCccEEEEEEEeecCCCceEEEEEecCccchH--HHHhhcccCcccceeeeEEEEEEEEecCCCCcE
Q 000108 788 LHNASGWFGSVPLEASGDFGIHPEEGEFHLMCQVPCVEVN--ALMRTFKMKPLLFPLAGSVTAVFNCQGPLDAPI 860 (2184)
Q Consensus 788 l~n~~g~~g~i~v~~~G~i~id~e~g~f~L~~~v~~V~v~--~l~~tl~~~~~~~plaG~V~a~~~v~G~l~~Pv 860 (2184)
++++........++++|+++++. +.+++.+++...... .+...+.......+..|.....++|+|++++|.
T Consensus 148 ~~~~~l~~~~~~i~~~G~~~l~~--~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gt~~~Pk 220 (220)
T PF13502_consen 148 IDDLTLSTDRLRITGSGTVDLDT--QTLDLNGNVRPPNSSNLSLVGALARLGSGEKASGILPIPFRITGTLDNPK 220 (220)
T ss_pred EeeeEEEccCEEEEEEEEEecCc--ccEEEEEEEEecccccchhhhhhhhhccccccCceEEEEEEEEeehhccC
Confidence 99999999999999999765544 556777775543321 111111111125667888888999999999983
No 11
>PF13502 AsmA_2: AsmA-like C-terminal region
Probab=98.48 E-value=7.6e-06 Score=94.80 Aligned_cols=135 Identities=16% Similarity=0.215 Sum_probs=105.9
Q ss_pred eeEEEEEEEecCCcEEEeeEEEEeCCeEEEEeeeccCC----CcceeEEEeccccccchhhcccccccchhhhhhccccc
Q 000108 1465 QRVLAVGAYSNDDGLRLEKMFIQKDNATIHADGTLLGP----KSNLHFAVLNFPVSLVPTVVQVIESSATDAIHSLRQLL 1540 (2184)
Q Consensus 1465 ~~v~a~g~~~~n~~L~L~~l~l~~g~g~l~asGt~~~~----~~~~~l~v~n~pL~ll~~~v~~~~~~~~d~~~~l~~~~ 1540 (2184)
.++.++.++. ++.++++++.+...+|+++++|++... ..++++.+++++++.+.+.++. .
T Consensus 2 ~~v~~~~~~~-~~~l~l~~l~~~~~gg~~~~~g~~~~~~~~~~~~~~~~l~~~dl~~l~~~~~~---------------~ 65 (220)
T PF13502_consen 2 GDVSADARLQ-DGSLSLDNLSANLFGGTLSGSGSLDADGGPPSFSLDLKLNNVDLGQLLKAFGK---------------P 65 (220)
T ss_pred ceEEEEEEEe-CCEEEEEEEEEEcCCeEEEEEEEEEeCCCCcEEEEEEEEEcCCHHHHHHhcCc---------------c
Confidence 5688899998 899999999999999999999998654 2468888899998777766553 2
Q ss_pred cceEEEEEEEEEEeeccCCC-------EEEEEEEEeCeeeec----------------------ccccceeeEEEecccc
Q 000108 1541 APIRGILHMEGDLRGNLAKP-------ECDVQVRLLDGAIGG----------------------IDLGRAEIVASLTSTS 1591 (2184)
Q Consensus 1541 ~~l~G~Ln~~~~L~Gtl~~P-------~~~~~l~l~dg~i~g----------------------~~l~~~~~~asl~~~~ 1591 (2184)
..++|.+++.+++.|....+ ...+++++.++.+.+ ..++.+.+.+++ .++
T Consensus 66 ~~l~G~~~~~~~l~~~~~~~~~~~~~l~G~~~~~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~g 144 (220)
T PF13502_consen 66 GPLSGKLDLDGSLSGPGNSWEPLINSLNGKGSFSVRNGKLNGIPILRDLDAAVTLNFSALKGGDLKFDDLSGDFSI-KDG 144 (220)
T ss_pred ccccceEEEEEEEcccCccchhhhhceeeEEEEeccceEEeCCccccchhhhhcccccccccCCccccEEEEEEEE-ECC
Confidence 35799999999999887643 245677777888877 356778888888 788
Q ss_pred eEEEEeeeeeeecceeEEEEEEeecc
Q 000108 1592 RFLFNAKFEPIIQNGHVHIQGSVPVS 1617 (2184)
Q Consensus 1592 rl~~~~~l~~~~~~g~l~~~GsiPl~ 1617 (2184)
++.++ ++.+......+.++|.+.+.
T Consensus 145 ~~~~~-~~~l~~~~~~i~~~G~~~l~ 169 (220)
T PF13502_consen 145 RLRID-DLTLSTDRLRITGSGTVDLD 169 (220)
T ss_pred EEEEe-eeEEEccCEEEEEEEEEecC
Confidence 88885 56666667788888887654
No 12
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=98.34 E-value=1.4e-05 Score=106.97 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=68.5
Q ss_pred eEEEeeeeeceeeeeEEEecccceeeecceeeEEeCCcEEEEEEEEEecCCCccCcceeEEEeeccccccchhccccccc
Q 000108 896 VAAFDRVPFSYVSANFTFNTDNCVADLYGIRASLVDGGEIRGAGNAWICPEGEVDDRAIDVNFSGNVSFDKIAHRYISDY 975 (2184)
Q Consensus 896 ~~~~drv~f~~isa~f~~~~~~~~~~L~~i~a~~~~GG~I~g~G~~~~~~~~e~~~~a~~v~~sg~l~~~~i~l~~lp~~ 975 (2184)
.+.+.++++++++..+..+.+.+. |+.+.+. ..+|++++.++++.. .....+.++.+++ +++...+....
T Consensus 446 ~l~~~~l~i~~~~~~~~~~~G~l~--l~~l~~~-l~~G~~~~~~~ld~~--~~~~~~~~~~~~~-~v~l~~Ll~~~---- 515 (604)
T PF05170_consen 446 SLKANGLPISNLKLQLKAKDGLLT--LDPLSAK-LYGGSLSGSASLDAR--QDPPQYSLNLNLR-GVQLQPLLQDL---- 515 (604)
T ss_pred heEECCceecccEEEEEecCCeEE--EeeeeEe-cCCcEEEEEEEEecc--CCCccEEEeeeeC-CcchHHHHhhh----
Confidence 588999999999999988877755 8898986 899999999999753 2345666666665 56665554433
Q ss_pred cccCcccccceeEEEEEEeccC
Q 000108 976 LQLMPLKLGDLSGETKLSGSLL 997 (2184)
Q Consensus 976 ~~~pp~~~G~l~g~~~lsGsl~ 997 (2184)
..+....|..++++.++|...
T Consensus 516 -~~~~~l~G~~~~~~~l~g~G~ 536 (604)
T PF05170_consen 516 -ALPDPLSGTGDLNLDLTGQGN 536 (604)
T ss_pred -ccccCceEEEEEEEEEEeCCC
Confidence 223456999999999999864
No 13
>PF13116 DUF3971: Protein of unknown function
Probab=98.33 E-value=0.00013 Score=88.86 Aligned_cols=244 Identities=18% Similarity=0.278 Sum_probs=165.8
Q ss_pred Chhhhhcccc---cc--------EEEeeeeee-eEEEEEEeCCC-CC----ceEEEEEEEeeeEEEEcccccceeeeeEE
Q 000108 716 FVPLFERILE---IP--------IMWSKGRAT-GEVHLCMSTGE-TF----PSLHGQLDITGLAFRIFDAPSSFSDISTS 778 (2184)
Q Consensus 716 ~a~~i~~ll~---lP--------i~i~~G~~d-g~l~i~l~~~~-~~----~~~~G~~~l~~~~~~i~~~p~~~s~i~G~ 778 (2184)
++..+.+++| ++ =.|.+|+++ +.+.+.....+ .+ ..|++.++++++++++.+-=-++++++|.
T Consensus 2 ~~~~~~~y~P~~~l~~~~~~Wl~~~i~~G~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~wP~l~~~~g~ 81 (288)
T PF13116_consen 2 DASFVKRYWPRKVLPPGLREWLDDAIKGGRVDDGSLVLKGPLDDFPFDDPDGSFQADADVSDATLRFDPDWPPLTDVDGR 81 (288)
T ss_pred CHHHHHHhCCcccCCHhHHHHHHhhcccceEEEEEEEEEEccccCCccCCCCEEEEEEEEeeeEEEeCCCCCccccceEE
Confidence 3455666666 22 267888888 77777754222 11 47999999999999999633389999999
Q ss_pred EEEeCcEEEEeecceeecCccEEEEEEEeec---CCCceEEEEEecCccchHHHHhhcccCcc---------cceeeeEE
Q 000108 779 LCFRGQRIFLHNASGWFGSVPLEASGDFGIH---PEEGEFHLMCQVPCVEVNALMRTFKMKPL---------LFPLAGSV 846 (2184)
Q Consensus 779 L~f~g~~I~l~n~~g~~g~i~v~~~G~i~id---~e~g~f~L~~~v~~V~v~~l~~tl~~~~~---------~~plaG~V 846 (2184)
+.|.+.++.++--++.++++++.= +.+.++ .+....++.+++.+ ++.++++.|+-.|+ +.-++|.+
T Consensus 82 l~~~~~~l~i~~~~g~~~~~~l~~-~~v~I~~l~~~~~~l~i~~~~~g-~~~~~~~~L~~~pL~~~~~~~l~~~~~~G~~ 159 (288)
T PF13116_consen 82 LRFDNNRLRITADSGRLGGVDLSD-GSVRIPDLFGKDPVLTIDGKASG-PASDLLELLQASPLRDLLGEPLPPLQVSGQA 159 (288)
T ss_pred EEEECCEEEEEECceEEcceEeeE-EEEEEccccCCCcEEEEEEEeeC-cHHHHHHHHHhCchhhhhcccCCceecCceE
Confidence 999999999999999999987663 345553 23333566666555 66667766654443 46789999
Q ss_pred EEEEEEecCCC-C--cEEEEEEEEeecccccccCcchhhHHHHHhhhcccCceEEEe--eeeeceeeeeEEEecccceee
Q 000108 847 TAVFNCQGPLD-A--PIFVGSGMVSRKMSYSVSDVPVSAAMEAMLKSKEAGAVAAFD--RVPFSYVSANFTFNTDNCVAD 921 (2184)
Q Consensus 847 ~a~~~v~G~l~-~--Pv~~G~v~~s~~~~~~~~~~~~~~a~~a~~~~~~~~~~~~~d--rv~f~~isa~f~~~~~~~~~~ 921 (2184)
.+++++.-++. . ..+.|++...+ +.+.+. +++|+++++.+.|++..+.
T Consensus 160 ~~~l~l~iPl~~~~~~~~~g~~~~~~-------------------------~~l~~~~~~~~l~~~~g~l~f~~~~~~-- 212 (288)
T PF13116_consen 160 DLDLDLDIPLKKGPDVSVSGSATLKD-------------------------ASLSLPPLGLPLTNVNGDLTFDNNGLS-- 212 (288)
T ss_pred EEEEEEEEEcCCCCceEEEEEEEEcC-------------------------CEEEecCCCCcceeEEEEEEEecCceE--
Confidence 99999999999 4 46777765442 246666 8899999999999965544
Q ss_pred ecceeeEEeCCcEEEEEEEEEecCCCccCcceeEEEeeccccccchhccccccccccCcccccceeEEEEEEecc
Q 000108 922 LYGIRASLVDGGEIRGAGNAWICPEGEVDDRAIDVNFSGNVSFDKIAHRYISDYLQLMPLKLGDLSGETKLSGSL 996 (2184)
Q Consensus 922 L~~i~a~~~~GG~I~g~G~~~~~~~~e~~~~a~~v~~sg~l~~~~i~l~~lp~~~~~pp~~~G~l~g~~~lsGsl 996 (2184)
.+++++. ..|+.+++...... ..+...+++++++.++.+.+.. .++. .......|.+..++.+..+.
T Consensus 213 ~~~~~~~-~~g~p~~~~~~~~~----~~~~~~~~i~~~~~~~~~~l~~-~l~~--~~~~~~~G~~~~~~~~~l~~ 279 (288)
T PF13116_consen 213 AENGSGR-LLGGPVNIDLDTNQ----SDGGGQVSIDLSGDLSAAQLLA-WLPL--PLDDFLSGSAPWDVDLDLNL 279 (288)
T ss_pred eeccEEE-EcCccEEEEEEecc----cCCCceEEEEEEcccCHHHHhh-hccc--chhhccCceeEEEEEEEEEc
Confidence 6667776 88888888866522 1234444666665566666644 2220 11123466666666655553
No 14
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=98.33 E-value=6.9e-05 Score=100.48 Aligned_cols=206 Identities=16% Similarity=0.144 Sum_probs=134.2
Q ss_pred ceEEEEEEEeccChhhhhccccc-----c-EEEeeeeeeeEEE-EEEeC-CCCCceEEE---EEEEeeeEEEEcccccce
Q 000108 704 QQWHGNLKIMNLFVPLFERILEI-----P-IMWSKGRATGEVH-LCMST-GETFPSLHG---QLDITGLAFRIFDAPSSF 772 (2184)
Q Consensus 704 q~~~l~l~~~~l~a~~i~~ll~l-----P-i~i~~G~~dg~l~-i~l~~-~~~~~~~~G---~~~l~~~~~~i~~~p~~~ 772 (2184)
..|.++|++++|++..+...... | -..+..-.++... ..+.. ......++| +++++=..+++.+++ +
T Consensus 377 p~~~~~L~~~~ldld~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~l~~~~l~~~~l~--i 454 (604)
T PF05170_consen 377 PRLRFDLASDKLDLDRYLPPSGAGAAASPAPPPQATGLSAAGAPLPLPDDPLDLGALQGLDADLTLSAGSLKANGLP--I 454 (604)
T ss_pred CcceeeeEecccchhhccCccccccccccCccccccccccCcccccCccCccccchhcccCeeEEEEhhheEECCce--e
Confidence 46888999999998877766433 2 1122111111111 01111 110122344 888888888889998 9
Q ss_pred eeeeEEEEEeCcEEEEeecceeecCccEEEEEEEeecCCCceEEEEEecCccchHHHHhhcccCcccceeeeEEEEEEEE
Q 000108 773 SDISTSLCFRGQRIFLHNASGWFGSVPLEASGDFGIHPEEGEFHLMCQVPCVEVNALMRTFKMKPLLFPLAGSVTAVFNC 852 (2184)
Q Consensus 773 s~i~G~L~f~g~~I~l~n~~g~~g~i~v~~~G~i~id~e~g~f~L~~~v~~V~v~~l~~tl~~~~~~~plaG~V~a~~~v 852 (2184)
+++...+..+++.+.++.+++.+.+=.+.++++++.......|++..++.+|++..++..+.. +.+++|.+.+.+.+
T Consensus 455 ~~~~~~~~~~~G~l~l~~l~~~l~~G~~~~~~~ld~~~~~~~~~~~~~~~~v~l~~Ll~~~~~---~~~l~G~~~~~~~l 531 (604)
T PF05170_consen 455 SNLKLQLKAKDGLLTLDPLSAKLYGGSLSGSASLDARQDPPQYSLNLNLRGVQLQPLLQDLAL---PDPLSGTGDLNLDL 531 (604)
T ss_pred cccEEEEEecCCeEEEeeeeEecCCcEEEEEEEEeccCCCccEEEeeeeCCcchHHHHhhhcc---ccCceEEEEEEEEE
Confidence 999999999999999999998876668888887777788888999999999999999998863 56799999999999
Q ss_pred ecCCC-----CcEEEEEEEEeecccccccCcchhhHHHHHhhhcccCceEEEeeeeeceeeeeEEEeccc
Q 000108 853 QGPLD-----APIFVGSGMVSRKMSYSVSDVPVSAAMEAMLKSKEAGAVAAFDRVPFSYVSANFTFNTDN 917 (2184)
Q Consensus 853 ~G~l~-----~Pv~~G~v~~s~~~~~~~~~~~~~~a~~a~~~~~~~~~~~~~drv~f~~isa~f~~~~~~ 917 (2184)
+|.-. ...+.|++...-..+...--.-....-+|++... ..-.=+..+|+.+.+.|+++.+.
T Consensus 532 ~g~G~s~~~l~~sl~G~~~~~~~dg~~~Ginl~q~i~~~~~~~~---~~~~~~~T~f~~~~~~~~i~~Gv 598 (604)
T PF05170_consen 532 TGQGNSVAALKRSLNGSLSLNLRDGALSGINLAQLIREAIARLS---QDDEDDQTPFSCLTASFKINNGV 598 (604)
T ss_pred EeCCCCHHHHHhcCCCEEEEEECCCeEeccCHHHHHHHHHHhcc---ccccCCCcceEEEEEEEEEeCcE
Confidence 88876 4457787765532111110111112223332211 11223445688778888776544
No 15
>PF05359 DUF748: Domain of Unknown Function (DUF748); InterPro: IPR008023 This is a family of proteins of unknown function.
Probab=98.24 E-value=3.6e-05 Score=84.73 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=109.5
Q ss_pred ceeeceEEEECcEEEEEecCCC--CcEEEEeeeeEEEEec--ccceEEEEEeeeeeccccccccCCCCeEEEEEEEcccc
Q 000108 628 PFVLDSVHFKGGTLMLLAYGDR--EPREMENASGHVKFQN--HYGRVHVQVSGNCKMWRSDTISGDGGWLSADVFVDSIE 703 (2184)
Q Consensus 628 ~~~l~~V~i~~g~~~L~~~g~~--~p~~l~~vnG~v~~~~--~~~~i~~dl~G~~~~~~~~~~~~~Gg~l~~~g~~~~~~ 703 (2184)
++.+++|.+++|++....+... ..+.++++++++.-.. .+...++++++.+. .+|.++++|.++...
T Consensus 2 ~~~i~~l~l~~g~i~f~D~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~l~~~~~---------~~g~l~~~G~~~~~~ 72 (151)
T PF05359_consen 2 RIRIDHLSLKNGRINFTDQSVPPPFKLELSDINLTLDNLSTDSNEPAPVSLSASLN---------GGGTLSASGKLSPFP 72 (151)
T ss_pred eEEEeEEEEECCEEEEEeCCCCCCceEEEEEEEEEEEeccCCCCCcEEEEEEEEeC---------CCCEEEEEEEEEeCC
Confidence 6789999999999999987533 3469999999999664 35789999999985 578999999999988
Q ss_pred ceEEEEEEEeccChhhhhcccc--ccEEEeeeeeeeEEEEEEeCCCCCceEEEEEEEeeeEEEEcc
Q 000108 704 QQWHGNLKIMNLFVPLFERILE--IPIMWSKGRATGEVHLCMSTGETFPSLHGQLDITGLAFRIFD 767 (2184)
Q Consensus 704 q~~~l~l~~~~l~a~~i~~ll~--lPi~i~~G~~dg~l~i~l~~~~~~~~~~G~~~l~~~~~~i~~ 767 (2184)
.+.++++++++++++.+..+++ +|+.+.+|+++.++++.+..++......|++.++++.+.-..
T Consensus 73 ~~~~~~~~l~~l~L~~~~pyl~~~~~~~l~~G~l~~~~~~~~~~~~~~l~~~g~~~l~~l~l~~~~ 138 (151)
T PF05359_consen 73 LDSDGTLKLNNLDLAPLQPYLAQYLPFQLQSGQLDLDLNYKLAKGDGQLSANGKLSLNDLRLADKG 138 (151)
T ss_pred cCeeEEEEEeCCChHHhhhhhHhhcCcccceEEEEEEEEEEEccCCceEEEeCeEEEEEEEeecCC
Confidence 8888999999999999999975 679999999998888886322323467899999988887764
No 16
>COG3164 Predicted membrane protein [Function unknown]
Probab=98.07 E-value=0.0017 Score=87.23 Aligned_cols=268 Identities=16% Similarity=0.154 Sum_probs=171.2
Q ss_pred CCCcEEEEeeeeEEEEecccceEEEEEeeeeeccccccccCCCCeEEEEE--EEcccc----c-eEEEEEEEeccChhhh
Q 000108 648 DREPREMENASGHVKFQNHYGRVHVQVSGNCKMWRSDTISGDGGWLSADV--FVDSIE----Q-QWHGNLKIMNLFVPLF 720 (2184)
Q Consensus 648 ~~~p~~l~~vnG~v~~~~~~~~i~~dl~G~~~~~~~~~~~~~Gg~l~~~g--~~~~~~----q-~~~l~l~~~~l~a~~i 720 (2184)
-.+|.++++..|++-...+..-+. |.+..+ .-.+..+.+.| -+.... + -..+....+..+++..
T Consensus 442 F~aplei~~a~~~l~W~~~d~g~~--l~s~~l-------~V~a~dl~a~g~g~fr~~~~~~~~p~l~l~agld~~da~~a 512 (1271)
T COG3164 442 FRAPLEIRQAQGTLSWRQDDKGWQ--LWSDNL-------DVQAKDLSARGRGGFRYMQPTGAEPWLDLLAGLDDDDAPQA 512 (1271)
T ss_pred cCCceeehhhcceEEEEecCcceE--eccccc-------eEEccccccccccceEecCCCCCCchheeeeeccccccchh
Confidence 367899999999998885543443 332211 01122333333 333322 1 1356666799999999
Q ss_pred hcccc--cc---------EEEeeeeee-eEEEEEEe-------CCCCCceEEEEEEEeeeEEEEcccccceeeeeEEEEE
Q 000108 721 ERILE--IP---------IMWSKGRAT-GEVHLCMS-------TGETFPSLHGQLDITGLAFRIFDAPSSFSDISTSLCF 781 (2184)
Q Consensus 721 ~~ll~--lP---------i~i~~G~~d-g~l~i~l~-------~~~~~~~~~G~~~l~~~~~~i~~~p~~~s~i~G~L~f 781 (2184)
-|++| +| -.|++|+++ +.+-+.=. ..+ ..|+--+.++++.+++..-=-.|++++++|.|
T Consensus 513 ~RYlP~slmg~~L~DyLs~Aiq~G~v~natlv~~G~l~dfPy~~h~--G~F~v~vplr~a~fafqp~WPalt~l~~dl~F 590 (1271)
T COG3164 513 WRYLPTSLMGRELADYLSGAIQGGQVDNATLVYGGNLHDFPYKAHE--GQFEVYVPLRNAKFAFQPDWPALTNLDIDLDF 590 (1271)
T ss_pred hhhcchhccchHHHHHHHHHhhcCcccceEEEEccccccccccccC--ceEEEEEEecCcEEecCCCCCcccccceEEEE
Confidence 99977 33 268999998 44433311 122 37888899999999999633379999999999
Q ss_pred eCcEEEEeecceeecCccE-EEEEEEeecCCCceEEEEEecCccchHHHHhhcccCcc---------cceeeeEEEEEEE
Q 000108 782 RGQRIFLHNASGWFGSVPL-EASGDFGIHPEEGEFHLMCQVPCVEVNALMRTFKMKPL---------LFPLAGSVTAVFN 851 (2184)
Q Consensus 782 ~g~~I~l~n~~g~~g~i~v-~~~G~i~id~e~g~f~L~~~v~~V~v~~l~~tl~~~~~---------~~plaG~V~a~~~ 851 (2184)
.+..+.+..-++..+++++ .++|.| =|..++-+.+.+.+++= ..++...+.-.|+ .+-+.|.|++.++
T Consensus 591 ~n~gl~~k~~~~~L~gV~~s~lta~I-Pd~~k~~L~Ida~v~g~-~~~~~~y~~atPl~ds~g~tl~e~q~~Gp~~~~l~ 668 (1271)
T COG3164 591 INDGLWMKADSGNLGGVRASDLTAGI-PDYSKEKLYIDADVDGP-GKAVLPYFDATPLKDSVGATLDELQADGPVSGRLH 668 (1271)
T ss_pred ecCceEEEcCCceecccchhheeecc-CCCCcccEEEEEeccCc-hhhhhhhhhcCCcchhHHHHhHhhccCCcceeEEE
Confidence 9999999999999998765 355533 24445544444445442 5555555554444 4667888999988
Q ss_pred EecCCC---CcEEEEEEEEeecccccccCcchhhHHHHHhhhcccCceEEEe--eeeeceeeeeEEEecccceeeeccee
Q 000108 852 CQGPLD---APIFVGSGMVSRKMSYSVSDVPVSAAMEAMLKSKEAGAVAAFD--RVPFSYVSANFTFNTDNCVADLYGIR 926 (2184)
Q Consensus 852 v~G~l~---~Pv~~G~v~~s~~~~~~~~~~~~~~a~~a~~~~~~~~~~~~~d--rv~f~~isa~f~~~~~~~~~~L~~i~ 926 (2184)
+.=|+. .+.+.|.+..++. ...++ ..++++++..|+|..+.+. ...+.
T Consensus 669 LdIPL~~e~~t~a~G~V~l~nn-------------------------~l~i~p~~~~l~nV~GkfrF~~~~~~--s~~l~ 721 (1271)
T COG3164 669 LDIPLHHEQATRAGGEVTLSNN-------------------------SLFIKPLNSTLENVSGKFRFDNDGLS--SEPLT 721 (1271)
T ss_pred eccccccccccccccEEEeeec-------------------------eeEecCCCCchhhcCCceEEecCCcc--cchhh
Confidence 888887 5567788776643 13333 3558999999999988766 44555
Q ss_pred eEEeCCcEEEEEEEEEecCCCccCcceeEEEeec
Q 000108 927 ASLVDGGEIRGAGNAWICPEGEVDDRAIDVNFSG 960 (2184)
Q Consensus 927 a~~~~GG~I~g~G~~~~~~~~e~~~~a~~v~~sg 960 (2184)
+. -.+|.++-.... ...-..+.+.++++|
T Consensus 722 a~-~~~g~l~vg~~~----~eg~~~~qv~~~l~g 750 (1271)
T COG3164 722 AR-WLGGPLSVGFTT----KEGAKDYQVAVLLNG 750 (1271)
T ss_pred HH-HhCCceeccccc----cccccceeEEEeecc
Confidence 54 567777733222 111334555555543
No 17
>PF13116 DUF3971: Protein of unknown function
Probab=98.01 E-value=0.00041 Score=84.39 Aligned_cols=210 Identities=14% Similarity=0.139 Sum_probs=140.8
Q ss_pred eceEEEECcEEEEEecCCCCcEEEEeeeeEEEEecccceEEEEE-eeeeeccccccccCCCCeEEEEEEEccccceEEEE
Q 000108 631 LDSVHFKGGTLMLLAYGDREPREMENASGHVKFQNHYGRVHVQV-SGNCKMWRSDTISGDGGWLSADVFVDSIEQQWHGN 709 (2184)
Q Consensus 631 l~~V~i~~g~~~L~~~g~~~p~~l~~vnG~v~~~~~~~~i~~dl-~G~~~~~~~~~~~~~Gg~l~~~g~~~~~~q~~~l~ 709 (2184)
.....|+|+++...+.= =.+++++|++.|.+ .++.+.+ +|++...+ -+++.+.+.-. .......++.
T Consensus 56 ~~~~~v~~~~l~~~~~w----P~l~~~~g~l~~~~--~~l~i~~~~g~~~~~~-----l~~~~v~I~~l-~~~~~~l~i~ 123 (288)
T PF13116_consen 56 QADADVSDATLRFDPDW----PPLTDVDGRLRFDN--NRLRITADSGRLGGVD-----LSDGSVRIPDL-FGKDPVLTID 123 (288)
T ss_pred EEEEEEeeeEEEeCCCC----CccccceEEEEEEC--CEEEEEECceEEcceE-----eeEEEEEEccc-cCCCcEEEEE
Confidence 56778899998887763 26888999999983 5788887 46653111 11333333211 0111223333
Q ss_pred EEEeccChhhhhcccc-----------ccEEEeeeeeeeEEEEEEeCC-CCCceEEEEEEEeeeEEEEcccccceeeeeE
Q 000108 710 LKIMNLFVPLFERILE-----------IPIMWSKGRATGEVHLCMSTG-ETFPSLHGQLDITGLAFRIFDAPSSFSDIST 777 (2184)
Q Consensus 710 l~~~~l~a~~i~~ll~-----------lPi~i~~G~~dg~l~i~l~~~-~~~~~~~G~~~l~~~~~~i~~~p~~~s~i~G 777 (2184)
.++.. +++.+..++. ++..-.+|++++++.+.+.-. ..-..++|++++++..+.+......|++++|
T Consensus 124 ~~~~g-~~~~~~~~L~~~pL~~~~~~~l~~~~~~G~~~~~l~l~iPl~~~~~~~~~g~~~~~~~~l~~~~~~~~l~~~~g 202 (288)
T PF13116_consen 124 GKASG-PASDLLELLQASPLRDLLGEPLPPLQVSGQADLDLDLDIPLKKGPDVSVSGSATLKDASLSLPPLGLPLTNVNG 202 (288)
T ss_pred EEeeC-cHHHHHHHHHhCchhhhhcccCCceecCceEEEEEEEEEEcCCCCceEEEEEEEEcCCEEEecCCCCcceeEEE
Confidence 34444 6666666542 233556688888888887532 2113899999999999999977777999999
Q ss_pred EEEEeCcEEEEeecceeecCccEEEEEEEeecCCCceEEEEEecCc-cchHHHHhhcccCcccceeeeEEEEEEEEecCC
Q 000108 778 SLCFRGQRIFLHNASGWFGSVPLEASGDFGIHPEEGEFHLMCQVPC-VEVNALMRTFKMKPLLFPLAGSVTAVFNCQGPL 856 (2184)
Q Consensus 778 ~L~f~g~~I~l~n~~g~~g~i~v~~~G~i~id~e~g~f~L~~~v~~-V~v~~l~~tl~~~~~~~plaG~V~a~~~v~G~l 856 (2184)
.|.|.++.+..+++.+++.+.|++++. ..+..++.+.+.+.+.+ +++..+...++.. ....++|.+...+.+..+.
T Consensus 203 ~l~f~~~~~~~~~~~~~~~g~p~~~~~--~~~~~~~~~~~~i~~~~~~~~~~l~~~l~~~-~~~~~~G~~~~~~~~~l~~ 279 (288)
T PF13116_consen 203 DLTFDNNGLSAENGSGRLLGGPVNIDL--DTNQSDGGGQVSIDLSGDLSAAQLLAWLPLP-LDDFLSGSAPWDVDLDLNL 279 (288)
T ss_pred EEEEecCceEeeccEEEEcCccEEEEE--EecccCCCceEEEEEEcccCHHHHhhhcccc-hhhccCceeEEEEEEEEEc
Confidence 999999999999999999999999995 45544444566555443 3577777666543 3456788887776555444
No 18
>PRK10833 putative assembly protein; Provisional
Probab=97.72 E-value=0.0014 Score=88.44 Aligned_cols=285 Identities=12% Similarity=0.157 Sum_probs=166.5
Q ss_pred CCcEEEeeEEEEeCCeEEEEeeecc---CCCcceeEEEeccccccchhhccccccc--chhhhhhccccccc-eEEEEEE
Q 000108 1476 DDGLRLEKMFIQKDNATIHADGTLL---GPKSNLHFAVLNFPVSLVPTVVQVIESS--ATDAIHSLRQLLAP-IRGILHM 1549 (2184)
Q Consensus 1476 n~~L~L~~l~l~~g~g~l~asGt~~---~~~~~~~l~v~n~pL~ll~~~v~~~~~~--~~d~~~~l~~~~~~-l~G~Ln~ 1549 (2184)
.+.++++++.++.++..++.+..+. .+...+.++.+.++++.+.+........ +...-... ....+ .......
T Consensus 251 ~~~~~l~~l~~~l~~s~l~G~~~~~~~~~P~i~~~L~~~~lDLd~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 329 (617)
T PRK10833 251 PKRLSLNQLNLTANDSQLSGSASVTLGEKPEYQLDLQSDKLNLDNLLGLQPLANDENGAQQGQSQP-TLPRPVIASRIDS 329 (617)
T ss_pred CCeEEEeccceeeccceeeeEEEEEcCCCCeEEEEeccCccchhhcCCCcccccccccccccccCC-CCCCCccccCcCC
Confidence 4567777777777666654443332 1234677777888877654332210000 00000000 00000 0000000
Q ss_pred EEEEeeccCCCEEEEEEEEeCeeeecccccceeeEEEecccceEEEEeeeeeeecceeEEEEEEeecccccCCCcccccc
Q 000108 1550 EGDLRGNLAKPECDVQVRLLDGAIGGIDLGRAEIVASLTSTSRFLFNAKFEPIIQNGHVHIQGSVPVSLVQNSTSEEEDV 1629 (2184)
Q Consensus 1550 ~~~L~Gtl~~P~~~~~l~l~dg~i~g~~l~~~~~~asl~~~~rl~~~~~l~~~~~~g~l~~~GsiPl~~~~~~l~~~~~~ 1629 (2184)
...+. .+..-.+++++++....+.+..+.++.+.+.. .++++.+. .+......|.+.+.|++.....
T Consensus 330 ~~~~~-~L~~ld~~l~l~a~~l~~~~~~l~~~~~~l~~-~~G~l~l~-~l~~~l~gG~l~~~g~ld~~~~---------- 396 (617)
T PRK10833 330 EPAYQ-GLRDFTADLTLQADNVRYRGMNFTQVALQATN-QQGLLTIT-TLSGKLGGGDFSLPGTLDATGA---------- 396 (617)
T ss_pred CCChh-HHhcCCcceEEEECeEEECCcchhhheeeeec-cCCeEEEe-eccceecCceEEeEEEEEccCC----------
Confidence 01111 23345578888888999999999999999999 78999885 4444445778887777644310
Q ss_pred cccccCccccCcccccccCCCcccccccccccccccccchhhhhhhhccccccccccceeEEEEEecCcCchh-hHhhcc
Q 000108 1630 ETDKSGAAWVPGWVKERNRGSADVTGEKINLRDRTEEGWDTQLAESLKGLNWNILDVGEVRVDADIKDGGMML-LTALSP 1708 (2184)
Q Consensus 1630 ~~~~~~~~~vP~~~~~~~~G~~~~~~~~~v~r~~~~~g~~~~la~sL~g~~~~~ld~~~l~ldv~l~~~~L~l-L~~lt~ 1708 (2184)
.-.+++++++++.++.- +..|.
T Consensus 397 --------------------------------------------------------~p~~~~~~~~~~v~l~~ll~~l~- 419 (617)
T PRK10833 397 --------------------------------------------------------SPRITFQPRLKNVELGPLLKAFN- 419 (617)
T ss_pred --------------------------------------------------------CceEEEccccCCcChHHHHHhcc-
Confidence 01445666666666543 33333
Q ss_pred cccceeeEEEEEEEEeeecCCc-------eEEEEEEEeeeEEecCc-----------------------CCcceeeeeEE
Q 000108 1709 YAKWLQGNADIMLQVRGTVEQP-------VLDGSASFHRASISSPV-----------------------LRKPLTNFGGT 1758 (2184)
Q Consensus 1709 ~v~~l~G~l~~~L~V~GTl~~P-------~l~G~v~l~ng~~~~~~-----------------------l~~~Lt~i~g~ 1758 (2184)
....++|.++++++++|+-..+ .=++++.+.+|.+..-. -.++|+.+.+.
T Consensus 420 ~~~~l~G~~~~~~~l~g~G~s~~~l~~sL~G~~~~~~~~G~i~G~nl~~~l~~a~~~~~~~~~~~~~~~~~T~f~~l~~~ 499 (617)
T PRK10833 420 LPISLTGKLSLAGDFSGAGIDAAAFRHQWQGQAHVSMDNARLEGLNIQQLIQQAVERSGGDVKAQENYDNYTRLDRLTAD 499 (617)
T ss_pred CCcCceeEEEEEEEEEeCCCCHHHHHHhCCCeEEEEEecceEecCCHHHHHHHHHHhhcCCccccccccCCCChhhEEEE
Confidence 2346889999999888886643 33456667788775411 11578889999
Q ss_pred EEEeCceEEEEeeEEEecCCceEEEEEeecCCCCccCCCccEEEEecceee-eccC--cEEEEEeeeEEEEeeCCCceEE
Q 000108 1759 VHVKSNRLCITSLESRVSRRGKLFIKGNLPLRTNEASLGDKIDLKCEVLEV-RAKN--ILSGQVDTQMQITGSILQPTIS 1835 (2184)
Q Consensus 1759 i~f~g~~i~i~~Lta~~g~~G~l~~~G~l~L~~~~~~~~~~L~l~ld~l~l-~~~~--l~~G~vsGdL~ItGtl~~P~I~ 1835 (2184)
+.++++.++++.+..... .-+++.+|.++|... ..+|.+++++..-.- .... -+. .+.--++|+|++..|++.
T Consensus 500 ~~i~~Gv~~~~~l~l~s~-~~~~~g~G~vdL~~~--~lD~~l~~~~~~~~~g~~~~~~~l~-~~~vPv~i~G~~~~P~~~ 575 (617)
T PRK10833 500 LTLNRGVLTLNDLQGQSS-LLALTGSGQLNLPKQ--QCDVNFNVRVTGGWNGDSKLIDFLQ-ETPVPLRVYGNWQQLNYQ 575 (617)
T ss_pred EEEeCCEEEcCccccccc-ceEEecceeeccccc--cccEEEEEEEeccccCCchhhHHhh-CCeeeEEEEEECCCceEe
Confidence 999999999999987776 788999999999643 223444444322000 0000 011 245568899999988873
No 19
>PF04357 DUF490: Family of unknown function (DUF490); InterPro: IPR007452 This family contains several proteins of uncharacterised function.
Probab=97.72 E-value=0.0007 Score=85.53 Aligned_cols=127 Identities=20% Similarity=0.309 Sum_probs=82.7
Q ss_pred eeEEEEEEEEeeecCCceEEEEEEEeeeEEecCcCCcceeeeeEEEEEeCceEEEEeeEEEecCCceEEEEEeecCCC--
Q 000108 1714 QGNADIMLQVRGTVEQPVLDGSASFHRASISSPVLRKPLTNFGGTVHVKSNRLCITSLESRVSRRGKLFIKGNLPLRT-- 1791 (2184)
Q Consensus 1714 ~G~l~~~L~V~GTl~~P~l~G~v~l~ng~~~~~~l~~~Lt~i~g~i~f~g~~i~i~~Lta~~g~~G~l~~~G~l~L~~-- 1791 (2184)
.|.++++++++|++.+|.+.|.+.+.++.+..+............+.|.+.... ... ..+...........
T Consensus 47 ~g~~sg~l~l~G~~~~~~i~G~l~~~~~~i~~~~~~~~~~~~~~dv~~~~~~~~----~~~---~~~~~~~~~~~~~~~~ 119 (379)
T PF04357_consen 47 QGTLSGDLQLTGTLQQPRISGDLTVSNGTINLPPFPSSSSASDSDVVFVDRERV----EAN---PDTGEAEKPSEPPGFP 119 (379)
T ss_pred EEEEeEEEEEEecCcceEEEEEEEECCcEEEeccCCCccccccceEEEeCcccc----ccc---cccccccccccccccc
Confidence 489999999999999999999999999999988666432211124434333200 000 00000000000000
Q ss_pred CccCCCccEEEEe-cceeeeccCcEEEEEeeeEEEEeeCC-CceEEEEEEEeeEEEEcC
Q 000108 1792 NEASLGDKIDLKC-EVLEVRAKNILSGQVDTQMQITGSIL-QPTISGNIKLSHGEAYLP 1848 (2184)
Q Consensus 1792 ~~~~~~~~L~l~l-d~l~l~~~~l~~G~vsGdL~ItGtl~-~P~I~G~V~l~~g~I~Ip 1848 (2184)
.......++++.+ +++.++.+. +++.+.|+|+|+|++. .|.+.|++++.+|++.+.
T Consensus 120 ~~~~l~~dl~l~~~~~v~v~~~~-~~~~~~G~L~l~g~~~~~~~l~G~i~l~~G~~~~~ 177 (379)
T PF04357_consen 120 LPPDLNLDLDLDLGDNVRVDGPG-LDGRLSGDLNLNGTLAGPPQLSGSIRLTRGSYNFF 177 (379)
T ss_pred cccccccceeEccCCcEEEEcCc-eEEEEEEEEEEEeecCCCceEEEEEEEEEEEEEEc
Confidence 1111235677776 567776555 8999999999999955 499999999999999984
No 20
>PRK10695 hypothetical protein; Provisional
Probab=95.31 E-value=20 Score=49.82 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=42.2
Q ss_pred CCcEEEeeEEEEeCCeEEEEeeeccCCCcceeEEEeccccccchhhcccccccchhhhhhccccccceEEEEEEEEEE
Q 000108 1476 DDGLRLEKMFIQKDNATIHADGTLLGPKSNLHFAVLNFPVSLVPTVVQVIESSATDAIHSLRQLLAPIRGILHMEGDL 1553 (2184)
Q Consensus 1476 n~~L~L~~l~l~~g~g~l~asGt~~~~~~~~~l~v~n~pL~ll~~~v~~~~~~~~d~~~~l~~~~~~l~G~Ln~~~~L 1553 (2184)
+.-++++++.+..=+|.+.+.----.....+.+.+++++++-+..+.+.. ...++|+++|..=+
T Consensus 680 ~~pl~Ls~~s~~lLgG~isl~~l~lpq~~~a~L~L~~IdL~eLl~l~~~k--------------qi~~sG~vdG~LPl 743 (859)
T PRK10695 680 AKPLTLSNVSVDVLDGHLSMSQLRLPQHDPALLRLNNIDLSELLTALKPK--------------QFAMSGKVNGALPL 743 (859)
T ss_pred cCCeEeeeeceeccCCEEEccccCCCCCCceEEEEcCCCHHHHHhhcCcc--------------ceEEEeEECeEEeE
Confidence 34577777777666677766652212234577999999998888777651 35677777776444
No 21
>PF01203 T2SN: Type II secretion system (T2SS), protein N; InterPro: IPR022792 The secretion pathway (GSP) for the export of proteins (also called the type II pathway) [] requires a number of protein components. One of them is known as the 'N' protein and has been sequenced in a variety of bacteria such as Aeromonas hydrophila (gene exeN); Erwinia carotovora (gene outN); Klebsiella pneumoniae (gene pulN); or Vibrio cholerae (gene epsN). The size of the 'N' protein is around 250 amino acids. It apparently contains a single transmembrane domain located in the N-terminal section. The short N-terminal domain is predicted to be cytoplasmic and the large C-terminal domain periplasmic.
Probab=94.32 E-value=1.5 Score=51.92 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=76.7
Q ss_pred EeccChhhhhccccccEEEeeeeeeeEEEEEEe----CCCCCceEEEEEEEeeeEEEEcccccceeeeeEEEEEeCcEEE
Q 000108 712 IMNLFVPLFERILEIPIMWSKGRATGEVHLCMS----TGETFPSLHGQLDITGLAFRIFDAPSSFSDISTSLCFRGQRIF 787 (2184)
Q Consensus 712 ~~~l~a~~i~~ll~lPi~i~~G~~dg~l~i~l~----~~~~~~~~~G~~~l~~~~~~i~~~p~~~s~i~G~L~f~g~~I~ 787 (2184)
.-.+++..+..+++.|+.+. ++|++.+.+. .........|++...+..+....-..++....++|.-++.++.
T Consensus 81 ~~~lpa~~l~~~~~~p~p~~---~~G~~~l~~~~~~~~~~~c~~a~G~l~w~~a~v~~~~~~~~lg~~~~~l~c~~g~l~ 157 (221)
T PF01203_consen 81 RLSLPAAALAQLLPLPLPVP---LSGQLELDIDELRFGDGRCQQAEGQLVWQNAAVASPLGWLPLGSLSGDLSCQDGQLV 157 (221)
T ss_pred EeecCHHHHHhhccCCcccc---cceEEEEEeeeeEecCCCeEeeEEEEEEecccccccCCCCcccCEEEEEEecCCEEE
Confidence 35677788888775554322 2344555543 2223457899999999887777555568899999999988888
Q ss_pred EeecceeecCccEEEEEEEeecCCCceEEEEEecC-----ccchHHHHhhcc
Q 000108 788 LHNASGWFGSVPLEASGDFGIHPEEGEFHLMCQVP-----CVEVNALMRTFK 834 (2184)
Q Consensus 788 l~n~~g~~g~i~v~~~G~i~id~e~g~f~L~~~v~-----~V~v~~l~~tl~ 834 (2184)
+. ++..-| ++.++|++.++++.. |++.+.+. +=++...+..+.
T Consensus 158 ~~-l~~~~g--~l~l~g~~~l~~~g~-y~~~~~~~p~~~~~~~l~~~L~~lG 205 (221)
T PF01203_consen 158 LT-LSDQSG--PLQLDGQASLSPDGR-YRLDGTVKPGASAPPALRQALAFLG 205 (221)
T ss_pred EE-EeCCCC--ceEEEEEEEEcCCCe-EEEEEEEecCcCCCHHHHHHHHHcC
Confidence 77 555544 567777777775544 88888866 334555555443
No 22
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=93.89 E-value=0.14 Score=67.97 Aligned_cols=95 Identities=11% Similarity=0.118 Sum_probs=80.8
Q ss_pred eeeecccchhHHHHHhHHhccccceeeee-EEecceeEeeeeccC-CCCCCCceeeeeeeEEEeecceeeccceeEEEEE
Q 000108 134 SFIETKLLPSVCSMLSEYIQRDIDFGKVR-RVSPLSITLESCSIG-PHSEEFSCGEVHTMKLRVHPFASLRRGKIVIDAV 211 (2184)
Q Consensus 134 ~~~~~~l~p~~~~~ls~~~~r~v~~g~v~-~~s~~~~~l~~~si~-~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~ 211 (2184)
+|+.-.+-+.+++.++++.+|+|.||.|+ ++.+++++++..+|. |...+.+-+.+..+.+.+++.+.|++..++=.+.
T Consensus 23 ~~~dp~~K~~ie~~~seatGreV~Ig~V~lslfpl~l~i~gl~Vanp~~~~~~~~~i~~i~~~v~l~pLL~~~vvI~~l~ 102 (555)
T TIGR03545 23 FFFDPLAKKAIERSLEKAFGAKVEIAQVDTGLFPLQLSIQGLQVTDPDKPMRNLFEIDRINASLDWDALLRGKVVIEELA 102 (555)
T ss_pred HhCCHHHHHHHHHHHHHHHCCeEEEeEEEeeecCCeEEEeeEEEeCCCCCCCCeEEeeEEEEEeccHHHhcCCcEEeEEE
Confidence 35566677889999999999999999985 557899999999995 3334456899999999999998887777777799
Q ss_pred ecCceEEEEecCCCccc
Q 000108 212 LSHPTVLIAQKKDFSWL 228 (2184)
Q Consensus 212 ~~~p~~~~~q~~~~~wl 228 (2184)
|..|.|.++.+++|.-.
T Consensus 103 l~g~~v~l~R~~~G~~~ 119 (555)
T TIGR03545 103 IEGLAFGTERSTSGAVP 119 (555)
T ss_pred EecCEEEEEEccCCCCC
Confidence 99999999999999965
No 23
>COG2982 AsmA Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.30 E-value=0.26 Score=66.50 Aligned_cols=79 Identities=11% Similarity=-0.013 Sum_probs=66.1
Q ss_pred cccCCCccccceeeeeeccccccccCccceeeeeeeecceeEEEEecCccc-----eec--------Cccccccceeece
Q 000108 567 WPLGLKSSLLSFWGNVRELLSTFLAPFKELKSGVAPNVEDVVAELVDGVYI-----VQN--------EGIVKMLPFVLDS 633 (2184)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~l~~~l~~~~~l~~~vt~~~p~~~i~q~~dg~W-----i~~--------~~~~~~f~~~l~~ 633 (2184)
.+-.|.-++++.++.+..+|+ |++.+=-++.|.++.|.++++...+|.| +.+ .......+.++++
T Consensus 77 g~~~p~~v~~~~v~~sla~lp--Ll~~~l~i~~i~L~~p~i~L~r~~~g~~nw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 154 (648)
T COG2982 77 GAAEPHLVSAERVGASLALLP--LLSKQLQISQIRLDGPVIRLERLAEGRNNWDAPTAPQDPNTTPSSSSASAWSFDIGS 154 (648)
T ss_pred CCCCcceEEeeeeeeeeeehh--hhhcccceeeEEEcCceEeeEEcccccccccccccccccccccccccccccCcccCc
Confidence 445566789999999999999 6788888999999999999999999977 222 2344567889999
Q ss_pred EEEECcEEEEEecC
Q 000108 634 VHFKGGTLMLLAYG 647 (2184)
Q Consensus 634 V~i~~g~~~L~~~g 647 (2184)
|.|.+|++.+.-..
T Consensus 155 l~v~~g~v~~~d~~ 168 (648)
T COG2982 155 LKVDDGRVIFQDKN 168 (648)
T ss_pred eeecccEEEEeccc
Confidence 99999999988765
No 24
>PRK10695 hypothetical protein; Provisional
Probab=92.20 E-value=3.1 Score=57.23 Aligned_cols=214 Identities=13% Similarity=0.134 Sum_probs=128.8
Q ss_pred CCeEEEEEEEccccceEEEEEEEeccChhhhhcccccc--EEEeeeeeeeEEEEEEeCCCCCceEEEEEEEeeeEEEEcc
Q 000108 690 GGWLSADVFVDSIEQQWHGNLKIMNLFVPLFERILEIP--IMWSKGRATGEVHLCMSTGETFPSLHGQLDITGLAFRIFD 767 (2184)
Q Consensus 690 Gg~l~~~g~~~~~~q~~~l~l~~~~l~a~~i~~ll~lP--i~i~~G~~dg~l~i~l~~~~~~~~~~G~~~l~~~~~~i~~ 767 (2184)
=|+|.+.|-+|.. ..-.+..=..=++..|..|+|.- +.+++|++.++......+++. ....|...++++.+-+++
T Consensus 548 iGPi~l~gRwdg~--rLrG~~~Wp~Qsl~vFQpLip~~~~~~l~~G~l~aq~afsa~~~qG-~~agGh~~vkng~~~l~d 624 (859)
T PRK10695 548 IGPIRLNGRWDGE--RLRGQAWWPKQSLTVFQPLLPPDWKMNLRDGTLYAQAAFSAARGQG-FEAGGHWVVKNGSAWMPD 624 (859)
T ss_pred cCCeEeecEEccc--eecceecCcccchhhcccCCCcccCcEecCCEEEEEeeeeEcCCCC-eEecceEEEecceEEecC
Confidence 4699999999863 33344444667888899998744 999999999999988876664 788999999999999998
Q ss_pred cccceeeeeEEEEE--eCcEEEEee----------c--ceeecCccEEEEEE-------------EeecCCCceEEE---
Q 000108 768 APSSFSDISTSLCF--RGQRIFLHN----------A--SGWFGSVPLEASGD-------------FGIHPEEGEFHL--- 817 (2184)
Q Consensus 768 ~p~~~s~i~G~L~f--~g~~I~l~n----------~--~g~~g~i~v~~~G~-------------i~id~e~g~f~L--- 817 (2184)
-. ++-++..|-| ++.+..+.. + -..+.+|.+.+.|. +.++.=.|++.+
T Consensus 625 ge--i~Gldf~lp~rl~~~~~~lg~~~Pv~L~I~~l~~g~~i~nI~adlqG~Yp~s~~~pl~Ls~~s~~lLgG~isl~~l 702 (859)
T PRK10695 625 GE--INGVDFVLPFRLQDGAWQLGTRGPVTLRIAEINNLFTMQNITADLQGTYPYSEAKPLTLSNVSVDVLDGHLSMSQL 702 (859)
T ss_pred Cc--eeeeeEEEEeEecCCeEeecCCCCeEEEHHHccCCcCcccceeeecccccccccCCeEeeeeceeccCCEEEcccc
Confidence 66 6666655554 444333321 1 11122222223321 222332333222
Q ss_pred --------EEecCccchHHHHhhcccCcccceeeeEEEEEE--EEecCCCCcEEEEEEEEeecccccccCcchhhHHHHH
Q 000108 818 --------MCQVPCVEVNALMRTFKMKPLLFPLAGSVTAVF--NCQGPLDAPIFVGSGMVSRKMSYSVSDVPVSAAMEAM 887 (2184)
Q Consensus 818 --------~~~v~~V~v~~l~~tl~~~~~~~plaG~V~a~~--~v~G~l~~Pv~~G~v~~s~~~~~~~~~~~~~~a~~a~ 887 (2184)
.+++..+++..+++..+.+ .+-++|.|.+.+ .+.++.-. |-.|.+... .-+.+.. +..+.+|+
T Consensus 703 ~lpq~~~a~L~L~~IdL~eLl~l~~~k--qi~~sG~vdG~LPl~L~~~~~~-I~~G~Lan~-gpg~Lri---d~~~~dAi 775 (859)
T PRK10695 703 RLPQHDPALLRLNNIDLSELLTALKPK--QFAMSGKVNGALPLWLNNPQWI-VKDGWLANA-GPLTLRL---DKDLADAI 775 (859)
T ss_pred CCCCCCceEEEEcCCCHHHHHhhcCcc--ceEEEeEECeEEeEEEeCCcEE-EECCEEecC-CCeEEEe---CHHHHHHH
Confidence 1458899999999988876 689999999988 55544332 334554422 2122222 23455676
Q ss_pred hhhccc-CceEE-EeeeeeceeeeeEEEec
Q 000108 888 LKSKEA-GAVAA-FDRVPFSYVSANFTFNT 915 (2184)
Q Consensus 888 ~~~~~~-~~~~~-~drv~f~~isa~f~~~~ 915 (2184)
+++.-+ +.+.. ...+.+++.++.+.|+.
T Consensus 776 ~~sn~~~~~ald~L~y~eis~L~s~vd~~~ 805 (859)
T PRK10695 776 VKDNMTAGAAIDWLRYMEISRSWAKVNLDN 805 (859)
T ss_pred HhcCHHHHHHHHHHHhhhhhhheeEeeeCC
Confidence 554321 01111 13345666677777654
No 25
>PF13109 AsmA_1: AsmA-like C-terminal region
Probab=92.19 E-value=4.4 Score=47.69 Aligned_cols=152 Identities=12% Similarity=0.203 Sum_probs=106.1
Q ss_pred eEEEEEEEeccChhhhhccccccEEEeeeeeeeEEEEEEeCCCCCceEEEEEEEeeeEEEEc-----------ccc----
Q 000108 705 QWHGNLKIMNLFVPLFERILEIPIMWSKGRATGEVHLCMSTGETFPSLHGQLDITGLAFRIF-----------DAP---- 769 (2184)
Q Consensus 705 ~~~l~l~~~~l~a~~i~~ll~lPi~i~~G~~dg~l~i~l~~~~~~~~~~G~~~l~~~~~~i~-----------~~p---- 769 (2184)
.-.+.|.+.+..-..+..++.. =.+++|+ .++...-+. -.|.|++.+++...+=. .+|
T Consensus 20 ~~~l~l~a~~~~d~fln~~~~~-~~f~gG~----f~l~~~~~~--~~~~Gei~~~nt~ikd~~~l~nllafIntIPsLl~ 92 (214)
T PF13109_consen 20 NGKLNLEAKNFSDEFLNTLFNK-NIFKGGK----FNLKGKGED--GFFKGEISIQNTYIKDLKLLNNLLAFINTIPSLLT 92 (214)
T ss_pred CCEEEEEEecCCHHHHHHHhhh-hhccCce----EEEEEecCC--CeEEEEEEEcCcEeehhHHHHHHHHHHcCCcceEE
Confidence 3458899999999999999773 2334444 444443222 47999999977543211 122
Q ss_pred ----------cceeeeeEEEEEeCcEEEEeecceeecCccEEEEEEEeecCCCceEEEEEecCcc-chHHHHhhcccCcc
Q 000108 770 ----------SSFSDISTSLCFRGQRIFLHNASGWFGSVPLEASGDFGIHPEEGEFHLMCQVPCV-EVNALMRTFKMKPL 838 (2184)
Q Consensus 770 ----------~~~s~i~G~L~f~g~~I~l~n~~g~~g~i~v~~~G~i~id~e~g~f~L~~~v~~V-~v~~l~~tl~~~~~ 838 (2184)
..+++..-.+.++++.+.++++...=..+.+...|. +|.++..+++.+++..+ ++..+...+++--.
T Consensus 93 f~~P~fn~~G~~i~~g~i~f~~~~~~l~i~~i~l~G~s~di~G~G~--inl~~~~id~~l~l~~~K~ls~ii~kIPlvgy 170 (214)
T PF13109_consen 93 FKNPGFNNKGYEIKNGKINFNYKKDYLNIEKINLIGSSLDIFGKGI--INLKNKKIDIDLNLKTLKDLSKIISKIPLVGY 170 (214)
T ss_pred EcCCCcCCCcEEEEEeEEEEEEcCCEEEEEEEEEEcCcEEEEEEEE--EEcccceeeEEEEEEEHHHhhhHhhhCCcccE
Confidence 236677777888889999999888888888888885 66777778888887775 66777766554211
Q ss_pred -cceeeeEEEEEEEEecCCCCcEEEEEE
Q 000108 839 -LFPLAGSVTAVFNCQGPLDAPIFVGSG 865 (2184)
Q Consensus 839 -~~plaG~V~a~~~v~G~l~~Pv~~G~v 865 (2184)
-..-.|++...++++|++++|.+.-++
T Consensus 171 illGkd~~Ist~i~v~G~ldnP~i~t~l 198 (214)
T PF13109_consen 171 ILLGKDGSISTNIKVKGTLDNPKISTNL 198 (214)
T ss_pred EEEcCCCeEEEEEEEEeecCCCceehhh
Confidence 234456688899999999999777664
No 26
>PF13109 AsmA_1: AsmA-like C-terminal region
Probab=86.00 E-value=3.8 Score=48.23 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=72.7
Q ss_pred ccccccceeeeEEEEEEEecCCcEEEeeEEEEeCCeEEEEeeeccCCCcceeEEEeccccccchhhcccccccchhhhhh
Q 000108 1456 DWEWGTYRTQRVLAVGAYSNDDGLRLEKMFIQKDNATIHADGTLLGPKSNLHFAVLNFPVSLVPTVVQVIESSATDAIHS 1535 (2184)
Q Consensus 1456 ~w~wg~y~l~~v~a~g~~~~n~~L~L~~l~l~~g~g~l~asGt~~~~~~~~~l~v~n~pL~ll~~~v~~~~~~~~d~~~~ 1535 (2184)
.+.-.+|.+....+.+.|. ++.+.++.+.+...+..+...|.++.......+.++=.++..+...+..+ | -
T Consensus 97 ~fn~~G~~i~~g~i~f~~~-~~~l~i~~i~l~G~s~di~G~G~inl~~~~id~~l~l~~~K~ls~ii~kI------P--l 167 (214)
T PF13109_consen 97 GFNNKGYEIKNGKINFNYK-KDYLNIEKINLIGSSLDIFGKGIINLKNKKIDIDLNLKTLKDLSKIISKI------P--L 167 (214)
T ss_pred CcCCCcEEEEEeEEEEEEc-CCEEEEEEEEEEcCcEEEEEEEEEEcccceeeEEEEEEEHHHhhhHhhhC------C--c
Confidence 4555678999999999998 88999999999998999999999987765555555444443344433321 1 0
Q ss_pred ccccccceEEEEEEEEEEeeccCCCEEEEEE
Q 000108 1536 LRQLLAPIRGILHMEGDLRGNLAKPECDVQV 1566 (2184)
Q Consensus 1536 l~~~~~~l~G~Ln~~~~L~Gtl~~P~~~~~l 1566 (2184)
+..--..-+|.++....+.|++++|.+..++
T Consensus 168 vgyillGkd~~Ist~i~v~G~ldnP~i~t~l 198 (214)
T PF13109_consen 168 VGYILLGKDGSISTNIKVKGTLDNPKISTNL 198 (214)
T ss_pred ccEEEEcCCCeEEEEEEEEeecCCCceehhh
Confidence 1111234457789999999999999987754
No 27
>PF11739 DctA-YdbH: Dicarboxylate transport; InterPro: IPR021730 In certain bacterial families this protein is expressed from the ydbH gene, and there is a suggestion that this is a form of DctA or dicarboxylate transport protein. Dicarboxylate transport proteins are found in aerobic bacteria which grow on succinate or other C4-dicarboxylates [].
Probab=76.96 E-value=35 Score=40.24 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=83.7
Q ss_pred eeeeeEEEEEeCcE-----EEEeecceeecCccEEEEEEEeecCCCceEEEEEecCccchHHHHhhcccCcccceeeeEE
Q 000108 772 FSDISTSLCFRGQR-----IFLHNASGWFGSVPLEASGDFGIHPEEGEFHLMCQVPCVEVNALMRTFKMKPLLFPLAGSV 846 (2184)
Q Consensus 772 ~s~i~G~L~f~g~~-----I~l~n~~g~~g~i~v~~~G~i~id~e~g~f~L~~~v~~V~v~~l~~tl~~~~~~~plaG~V 846 (2184)
++++...+.+.... +.++++++.+=+=.+.+.- ++++..+.. .+.+.+..+++..++...+.+ .+-++|.+
T Consensus 12 l~n~~~~~~~~~~~~~~~~l~l~~~s~~l~gG~v~~~~-~~~~~~~~~-~~~l~l~~idL~ell~~~~~~--~~~~tG~l 87 (207)
T PF11739_consen 12 LTNIRASFQLEAPNSEAGPLRLSNASAELLGGRVSLEP-LRLPLADKS-SATLKLENIDLAELLALQGQK--GISATGRL 87 (207)
T ss_pred eeeeEEEEEEecCCccCCcEEEEEeEEEccCCEEEccc-eecCcccCe-EEEEEEcCCCHHHHHhhcCcc--ceEEEEEE
Confidence 67777777777765 7787776655444666664 678887776 889999999999999988765 67899999
Q ss_pred EEEE--EEecCCCCcEEEEEEEEeecccccccCcchhhHHHHHhhhc--ccCceEEEeeeeeceeeeeEEEec
Q 000108 847 TAVF--NCQGPLDAPIFVGSGMVSRKMSYSVSDVPVSAAMEAMLKSK--EAGAVAAFDRVPFSYVSANFTFNT 915 (2184)
Q Consensus 847 ~a~~--~v~G~l~~Pv~~G~v~~s~~~~~~~~~~~~~~a~~a~~~~~--~~~~~~~~drv~f~~isa~f~~~~ 915 (2184)
.+.+ ++.+.--. +-.|.+... ..+...+..+.. .+|+++.. ..-+.-+.+++.++..++.+++..
T Consensus 88 sG~lPl~~~~~~~~-I~~G~L~a~-~~G~l~~~~~~~--~~~l~~~~~~~~~a~~aL~nf~y~~l~~~i~~~~ 156 (207)
T PF11739_consen 88 SGRLPLRLDDGGIS-IRNGRLAAR-GPGTLRYDPEPA--VDALAASNPQLDLAFDALENFHYDRLSSSIDYDP 156 (207)
T ss_pred EEEEeEEEECCeEE-EeccEEEcC-CCcEEEECChhh--HHHHhccCHHHHHHHHHHhhceeeEEEEEeecCC
Confidence 9988 55544222 334444433 223433433322 23332111 000112355666776777776654
No 28
>PF05359 DUF748: Domain of Unknown Function (DUF748); InterPro: IPR008023 This is a family of proteins of unknown function.
Probab=73.97 E-value=81 Score=34.79 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=46.0
Q ss_pred eEEEEEecCcCchhhHhhcc---cccceeeEEEEEEEEee-ecC-CceEEEEEEEeeeEEecCcCCcce
Q 000108 1689 VRVDADIKDGGMMLLTALSP---YAKWLQGNADIMLQVRG-TVE-QPVLDGSASFHRASISSPVLRKPL 1752 (2184)
Q Consensus 1689 l~ldv~l~~~~L~lL~~lt~---~v~~l~G~l~~~L~V~G-Tl~-~P~l~G~v~l~ng~~~~~~l~~~L 1752 (2184)
.++++++++.+|.-+.++.+ .+.-.+|.++.++++.- .-. +=.+.|.+.+++-.+..+..+.++
T Consensus 75 ~~~~~~l~~l~L~~~~pyl~~~~~~~l~~G~l~~~~~~~~~~~~~~l~~~g~~~l~~l~l~~~~~~~~~ 143 (151)
T PF05359_consen 75 SDGTLKLNNLDLAPLQPYLAQYLPFQLQSGQLDLDLNYKLAKGDGQLSANGKLSLNDLRLADKGQDEPL 143 (151)
T ss_pred eeEEEEEeCCChHHhhhhhHhhcCcccceEEEEEEEEEEEccCCceEEEeCeEEEEEEEeecCCCCccc
Confidence 45888899999999988875 33446799998888873 111 335679999999888876555443
No 29
>PF11739 DctA-YdbH: Dicarboxylate transport; InterPro: IPR021730 In certain bacterial families this protein is expressed from the ydbH gene, and there is a suggestion that this is a form of DctA or dicarboxylate transport protein. Dicarboxylate transport proteins are found in aerobic bacteria which grow on succinate or other C4-dicarboxylates [].
Probab=52.43 E-value=1.6e+02 Score=34.76 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=42.2
Q ss_pred CCeEEEEE-EEccccceEEEEEEEeccChhhhhccccccEEEeeeeeeeEEEEEEeCC
Q 000108 690 GGWLSADV-FVDSIEQQWHGNLKIMNLFVPLFERILEIPIMWSKGRATGEVHLCMSTG 746 (2184)
Q Consensus 690 Gg~l~~~g-~~~~~~q~~~l~l~~~~l~a~~i~~ll~lPi~i~~G~~dg~l~i~l~~~ 746 (2184)
||.|++.- .++...+. .+.|+++++++..+..+.+.+=.--.|+++|.+=+.+.++
T Consensus 42 gG~v~~~~~~~~~~~~~-~~~l~l~~idL~ell~~~~~~~~~~tG~lsG~lPl~~~~~ 98 (207)
T PF11739_consen 42 GGRVSLEPLRLPLADKS-SATLKLENIDLAELLALQGQKGISATGRLSGRLPLRLDDG 98 (207)
T ss_pred CCEEEccceecCcccCe-EEEEEEcCCCHHHHHhhcCccceEEEEEEEEEEeEEEECC
Confidence 77776663 34553445 8999999999999999988773344579999999988754
No 30
>PF09898 DUF2125: Uncharacterized protein conserved in bacteria (DUF2125); InterPro: IPR018666 This family of conserved hypothetical proteins has no known function.
Probab=42.00 E-value=2.4e+02 Score=35.26 Aligned_cols=52 Identities=23% Similarity=0.222 Sum_probs=37.7
Q ss_pred EeCcEEEEeecceeecCccEEEEEEEeecCCCceEEEEEecCccchHHHHhhc
Q 000108 781 FRGQRIFLHNASGWFGSVPLEASGDFGIHPEEGEFHLMCQVPCVEVNALMRTF 833 (2184)
Q Consensus 781 f~g~~I~l~n~~g~~g~i~v~~~G~i~id~e~g~f~L~~~v~~V~v~~l~~tl 833 (2184)
.++..|.++.+....|+..++++|.+..|.+ |.-+..+.+.-.+...+++.+
T Consensus 207 ~~g~~i~l~~~~l~~G~~~l~~sG~l~~D~~-G~p~G~l~L~~~g~~~ll~~l 258 (312)
T PF09898_consen 207 PAGGSIDLRRLELDWGDLRLTASGTLSLDAD-GRPTGELTLRLRGWNALLDAL 258 (312)
T ss_pred cCCCEEEEEEEEEEEcCceEEEEeeeEECCC-CCcceEEEEEEcCHHHHHHHH
Confidence 3678999999999999999999999999875 333444444444455555544
No 31
>PF01203 T2SN: Type II secretion system (T2SS), protein N; InterPro: IPR022792 The secretion pathway (GSP) for the export of proteins (also called the type II pathway) [] requires a number of protein components. One of them is known as the 'N' protein and has been sequenced in a variety of bacteria such as Aeromonas hydrophila (gene exeN); Erwinia carotovora (gene outN); Klebsiella pneumoniae (gene pulN); or Vibrio cholerae (gene epsN). The size of the 'N' protein is around 250 amino acids. It apparently contains a single transmembrane domain located in the N-terminal section. The short N-terminal domain is predicted to be cytoplasmic and the large C-terminal domain periplasmic.
Probab=31.13 E-value=3.9e+02 Score=31.84 Aligned_cols=74 Identities=22% Similarity=0.400 Sum_probs=57.6
Q ss_pred ceeeEEEEEEE-EeeecCCc---eEEEEEEEeeeEEecCcCCcceeeeeEEEEEeCceEEEEeeEEEecCCceEEEEEee
Q 000108 1712 WLQGNADIMLQ-VRGTVEQP---VLDGSASFHRASISSPVLRKPLTNFGGTVHVKSNRLCITSLESRVSRRGKLFIKGNL 1787 (2184)
Q Consensus 1712 ~l~G~l~~~L~-V~GTl~~P---~l~G~v~l~ng~~~~~~l~~~Lt~i~g~i~f~g~~i~i~~Lta~~g~~G~l~~~G~l 1787 (2184)
.+.|.+.+++. +. ..+| .++|++.+.++.+..+.-..++.++.+++.-+++.+.++ .... +|.+.++|.+
T Consensus 100 ~~~G~~~l~~~~~~--~~~~~c~~a~G~l~w~~a~v~~~~~~~~lg~~~~~l~c~~g~l~~~---l~~~-~g~l~l~g~~ 173 (221)
T PF01203_consen 100 PLSGQLELDIDELR--FGDGRCQQAEGQLVWQNAAVASPLGWLPLGSLSGDLSCQDGQLVLT---LSDQ-SGPLQLDGQA 173 (221)
T ss_pred ccceEEEEEeeeeE--ecCCCeEeeEEEEEEecccccccCCCCcccCEEEEEEecCCEEEEE---EeCC-CCceEEEEEE
Confidence 56777777654 33 5555 789999999999999888889999999999999888763 3333 6888888888
Q ss_pred cCCC
Q 000108 1788 PLRT 1791 (2184)
Q Consensus 1788 ~L~~ 1791 (2184)
.+..
T Consensus 174 ~l~~ 177 (221)
T PF01203_consen 174 SLSP 177 (221)
T ss_pred EEcC
Confidence 8863
No 32
>PLN03160 uncharacterized protein; Provisional
Probab=21.56 E-value=4.5e+02 Score=31.54 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=57.0
Q ss_pred eEEEEecccCcccccccccceeeEEEEEEEeccCceeEEEEEEccceeeeeEeeeEEEEEEEeCcEEEEEeeE-Eee-eC
Q 000108 1224 SITLEVRHLPLDELELASLRGTIQRAEIQLNLQKRRGHGLLSVLRPKFSGLLGEALDVAVRWSGDVITVEKTI-LEQ-IN 1301 (2184)
Q Consensus 1224 ~l~l~v~~~pL~~L~l~pl~G~vs~g~l~lnl~~~~~~G~Lsi~~P~~~gi~~dsl~g~~~y~~~ii~L~~~~-l~q-g~ 1301 (2184)
+-.+++.++.+..|++.+ .+..+ ..+.+ +...++++.||...++..++.++.+.|.+..+---..- +.+ ..
T Consensus 66 ~P~~~v~~v~l~~~~~~~-~~~~~-~~~n~-----tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar 138 (219)
T PLN03160 66 DPVIKMNGVTVTKLELIN-NTTLR-PGTNI-----TLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTPPGKAKAR 138 (219)
T ss_pred CCeEEEEEEEEeeeeecc-CCCCc-eeEEE-----EEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcCCcccCCC
Confidence 345555555555555432 12221 22211 23567889999989999999999999988765332222 222 24
Q ss_pred eEEEEEEEEEcCCcccccCCcccchhhHHHhhcccccc
Q 000108 1302 SRYELQGEYVLPGTRDRNFSGKERDGLFKRAMTGHLGS 1339 (2184)
Q Consensus 1302 s~Y~l~G~~~l~g~~~~~~~~~~~~g~ie~ll~g~~~~ 1339 (2184)
++-.+.-++.+.+.+.. ......+++.+|.++.
T Consensus 139 ~T~~l~~tv~~~~~~~~-----~~~~L~~D~~~G~v~l 171 (219)
T PLN03160 139 RTMRMNVTVDIIPDKIL-----SVPGLLTDISSGLLNM 171 (219)
T ss_pred CeEEEEEEEEEEeceec-----cchhHHHHhhCCeEEE
Confidence 45555555554443221 1123455666665443
No 33
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=21.23 E-value=1.4e+02 Score=32.17 Aligned_cols=88 Identities=15% Similarity=0.307 Sum_probs=55.3
Q ss_pred cccchhHHHHHhHHhc----cccceeeee-EEecceeEeeeeccCCC--CCCCceeeeeeeEEEeecceeeccceeEEEE
Q 000108 138 TKLLPSVCSMLSEYIQ----RDIDFGKVR-RVSPLSITLESCSIGPH--SEEFSCGEVHTMKLRVHPFASLRRGKIVIDA 210 (2184)
Q Consensus 138 ~~l~p~~~~~ls~~~~----r~v~~g~v~-~~s~~~~~l~~~si~~~--~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~ 210 (2184)
..+..+|.+.|++|++ ..++++-.. .+.+..++|-...+-.. |=+..++.|..+.|++ |...|...|+. +
T Consensus 3 ~~v~~~L~~~Lg~yi~~l~~~ql~vsl~~G~v~L~nl~l~~~~l~~~~lP~~v~~g~i~~l~i~I-Pw~~l~~~pv~--i 79 (118)
T PF12624_consen 3 SLVSSLLNKYLGRYIENLDKDQLSVSLWNGEVELRNLELKKDALNNLGLPIEVKSGSIGKLRIKI-PWTSLWSKPVV--I 79 (118)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHeeeeeccCceEEEccEeeHHHhcCcCCCeEEeEEEeeeEEEEE-EhHHhCCCCEE--E
Confidence 3456677777777772 233333211 22333333333322211 2456788999999999 99999888555 6
Q ss_pred EecCceEEEEecCCCccc
Q 000108 211 VLSHPTVLIAQKKDFSWL 228 (2184)
Q Consensus 211 ~~~~p~~~~~q~~~~~wl 228 (2184)
.+++..+.+.-+.+.+|-
T Consensus 80 ~I~~v~l~~~~~~~~~~~ 97 (118)
T PF12624_consen 80 EIEDVFLVLKPKDQDEWD 97 (118)
T ss_pred EEeeEEEEEEECCccccC
Confidence 678888888888877776
Done!