Query 000108
Match_columns 2184
No_of_seqs 314 out of 681
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:30:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gwm_A NCP1, non-catalytic pro 35.3 93 0.0032 31.9 7.6 95 632-744 28-128 (153)
2 1mhx_A Immunoglobulin-binding 30.1 14 0.00047 32.9 0.6 11 319-329 1-11 (65)
3 3lyc_A Putative pectinase; str 14.3 1.3E+03 0.045 25.9 14.8 71 1716-1788 94-168 (241)
4 3sze_A Serine protease ESPP; p 13.1 4.6E+02 0.016 35.9 9.6 128 630-785 369-514 (968)
5 3my2_A Lipopolysaccharide expo 9.5 8.2E+02 0.028 26.5 8.9 82 738-823 77-164 (175)
6 2jn9_A YKVR protein; SR358, NE 7.2 1.1E+02 0.0038 30.6 0.4 18 341-358 47-64 (105)
7 2l9a_X LAK160-P12; cationic, p 6.5 1.2E+02 0.0039 22.5 0.2 9 96-104 8-16 (26)
8 2ajg_A Leucyl-tRNA synthetase; 6.3 98 0.0034 34.6 -0.5 18 319-336 1-18 (196)
9 3s57_A Alpha-ketoglutarate-dep 6.3 7.9E+02 0.027 27.4 7.0 90 138-235 78-189 (204)
10 1vmg_A Hypothetical protein SS 5.8 1.3E+02 0.0045 30.0 0.1 14 317-331 4-17 (95)
No 1
>1gwm_A NCP1, non-catalytic protein 1; carbohydrate binding domain, glucomannan, cellohexaose, mannohexaose, cellulosome; HET: GLC BGC; 1.15A {Piromyces equi} SCOP: b.18.1.19 PDB: 1gwk_A* 1gwl_A* 1w90_A 1w8t_A* 1w8u_A* 1w8w_A 1w8z_A 1w9f_A 1oh3_A*
Probab=35.32 E-value=93 Score=31.89 Aligned_cols=95 Identities=12% Similarity=0.292 Sum_probs=58.8
Q ss_pred ceEEEECcEEEEEecC-CCCcEEEEeeeeEEEEecccceEEEEEeeeeeccccccccCCCCeEEEEEEEccccceEEEE-
Q 000108 632 DSVHFKGGTLMLLAYG-DREPREMENASGHVKFQNHYGRVHVQVSGNCKMWRSDTISGDGGWLSADVFVDSIEQQWHGN- 709 (2184)
Q Consensus 632 ~~V~i~~g~~~L~~~g-~~~p~~l~~vnG~v~~~~~~~~i~~dl~G~~~~~~~~~~~~~Gg~l~~~g~~~~~~q~~~l~- 709 (2184)
-++.+.++.+.|.|+- .-..+.|++.+|+.+ ++-|++|+. +-|.+++.+.--.....+++.
T Consensus 28 ~~~S~~~~s~ii~~~~~~YGAiSLK~~~~~~r----GG~i~~~~K-------------~EG~VKi~V~~~~~~E~F~V~s 90 (153)
T 1gwm_A 28 CTLSYYGGAMIINPQEGKYGAVSLKRNSGSFR----GGSLRFDMK-------------NEGKVKILVENSEADEKFEVET 90 (153)
T ss_dssp EEEEEETTEEEEEECTTSCCEEEEEESSCCBC----SSEEEEEEE-------------ESSCEEEEEEETTTTEEEEEEE
T ss_pred ceEEecCCeEEEcCCCCccceEEeeccCCCcc----CceEEEEEe-------------cCcEEEEEEecCCcccceeeee
Confidence 3678999999999864 244889999988874 578888887 245666664444434454432
Q ss_pred EEEeccChhhhhcc-cccc---EEEeeeeeeeEEEEEEe
Q 000108 710 LKIMNLFVPLFERI-LEIP---IMWSKGRATGEVHLCMS 744 (2184)
Q Consensus 710 l~~~~l~a~~i~~l-l~lP---i~i~~G~~dg~l~i~l~ 744 (2184)
++...-+...+-.+ .++| |.+|.|-+++ .+|+|+
T Consensus 91 ~~~S~~~~~Y~~~VD~~~~FDRI~~QD~P~~~-~~I~~r 128 (153)
T 1gwm_A 91 ISPSDEYVTYILDVDFDLPFDRIDFQDAPGNG-DRIWIK 128 (153)
T ss_dssp ECCEEEEEEEEEECCCSSCBCEEEEEETTCSC-CCEEEE
T ss_pred eccccccEEEEEeccCcccccEEEEecCCCCC-CeEEEE
Confidence 22233333333333 3455 7788777764 566654
No 2
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=30.08 E-value=14 Score=32.93 Aligned_cols=11 Identities=64% Similarity=0.984 Sum_probs=8.3
Q ss_pred ccccCcccccc
Q 000108 319 MHWGDHHCMDT 329 (2184)
Q Consensus 319 ~~~~~~~~~~~ 329 (2184)
||.|.||.||+
T Consensus 1 mhhhhhhamdt 11 (65)
T 1mhx_A 1 MHHHHHHAMDT 11 (65)
T ss_dssp CCCCCCCCCEE
T ss_pred CCcccccccce
Confidence 67777788876
No 3
>3lyc_A Putative pectinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipoprotein; HET: MSE; 2.30A {Parabacteroides distasonis}
Probab=14.29 E-value=1.3e+03 Score=25.95 Aligned_cols=71 Identities=6% Similarity=0.174 Sum_probs=38.1
Q ss_pred EEEEEEEEeeecCCceEEEEEEEeeeEEecC-cC---CcceeeeeEEEEEeCceEEEEeeEEEecCCceEEEEEeec
Q 000108 1716 NADIMLQVRGTVEQPVLDGSASFHRASISSP-VL---RKPLTNFGGTVHVKSNRLCITSLESRVSRRGKLFIKGNLP 1788 (2184)
Q Consensus 1716 ~l~~~L~V~GTl~~P~l~G~v~l~ng~~~~~-~l---~~~Lt~i~g~i~f~g~~i~i~~Lta~~g~~G~l~~~G~l~ 1788 (2184)
...+++.+.+.+..+.+.-.+. ..|.+.+. .+ ...+. +.+...++-..+..++|...+...|.+.+.|...
T Consensus 94 sgsg~i~~~~~l~~~~l~i~~~-gsg~i~~~~~i~~~~l~~~-~~Gsg~i~~~~v~~~~l~~~~~Gsg~i~l~G~~~ 168 (241)
T 3lyc_A 94 AGSTHVNINSPLQAEEFEAGLA-GSGIIQFHDTASFTNLKIE-IAGSGDFVGHKVYCEELNGDMAGSNTIVLGGTVG 168 (241)
T ss_dssp EEEEEEEECSCEECSEEEEEEE-EEEEEEECSCEECSEEEEE-EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred cCcEEEEEccCcccceEEEEec-cceeEEEcCceeeccEEEE-EeccccEEecccccceEEEEEeccEEEEEEeEEe
Confidence 3456677777777666654432 22233222 00 01122 3444455554566777777764468888888654
No 4
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A {Escherichia coli O157}
Probab=13.06 E-value=4.6e+02 Score=35.88 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=68.0
Q ss_pred eeceEEEECcEEEEEecCCCCcEEEEeeeeEEEEecccc-------eEEE-------EEeeeeeccccccccCCCCeEEE
Q 000108 630 VLDSVHFKGGTLMLLAYGDREPREMENASGHVKFQNHYG-------RVHV-------QVSGNCKMWRSDTISGDGGWLSA 695 (2184)
Q Consensus 630 ~l~~V~i~~g~~~L~~~g~~~p~~l~~vnG~v~~~~~~~-------~i~~-------dl~G~~~~~~~~~~~~~Gg~l~~ 695 (2184)
..+.+++=||+|.|..++-=..+.+.-=.|+|.+.+++| .|.| ||+|+-.....-. ..|.|..-
T Consensus 369 n~G~LkVGdGtVIL~qqqAFs~V~i~SGR~TV~L~~~~Qv~p~~~d~IyFG~RGG~LDLNGn~ltF~~I~-~~D~GA~I- 446 (968)
T 3sze_A 369 QNTNLKTGEGLVILGAEKTFNNIYITSGDGTVRLNAENALSGGEYNGIFFAKNGGTLDLNGYNQSFNKIA-ATDSGAVI- 446 (968)
T ss_dssp CSSCEEEEEEEEEECSTTCCSCEEEEEEEEEEEECSTTCSCCSSSTTEEECTTCEEEECTTCCEEESCCE-ECSTTEEE-
T ss_pred cCCceeecceEEEEcchhhhcceeEecCceeEEECchhccCCCcCCcEEEecCCccccccCccceehhhh-ccCCCCEE-
Confidence 578999999999998874233555555567888776543 2332 4444321111110 11122211
Q ss_pred EEEEccccceEEEEEEEeccChhhhhccccccEEEeeeeeeeEEEEEEe-C---CCCCceEEEEEEEeeeEEEEcccccc
Q 000108 696 DVFVDSIEQQWHGNLKIMNLFVPLFERILEIPIMWSKGRATGEVHLCMS-T---GETFPSLHGQLDITGLAFRIFDAPSS 771 (2184)
Q Consensus 696 ~g~~~~~~q~~~l~l~~~~l~a~~i~~ll~lPi~i~~G~~dg~l~i~l~-~---~~~~~~~~G~~~l~~~~~~i~~~p~~ 771 (2184)
++...++-.+.|. +- .=.+.-|.+.|+++|... + .+....|+|.+++++ .
T Consensus 447 ---vN~~~~~atltl~--~~-----------~~~~~hG~~~gn~~v~~~~~~~~~~~~li~dG~~n~~g-~--------- 500 (968)
T 3sze_A 447 ---TNTSTKKSILSLN--NT-----------ADYIYHGNINGNLDVLQHHETKKENRRLILDGGVDTTN-D--------- 500 (968)
T ss_dssp ---ECCSSSCEEEEEC--CS-----------SCEEECSEEESSEEEEEECSSCCSSCCEEECSEEECSS-C---------
T ss_pred ---ecCCCceeEEEEc--CC-----------CceEEEEEecCceeEEeccCCCCccceEEEeCccccCC-e---------
Confidence 2222223223322 11 122456777888888765 1 222346888776642 2
Q ss_pred eeeeeEEEEEeCcE
Q 000108 772 FSDISTSLCFRGQR 785 (2184)
Q Consensus 772 ~s~i~G~L~f~g~~ 785 (2184)
|+.-+|.|.|+|+.
T Consensus 501 ~~~~ng~l~~qGhp 514 (968)
T 3sze_A 501 ISLRNTQLSMQGHA 514 (968)
T ss_dssp EEEESCEEEECCEE
T ss_pred EEEcCCEEEEccCc
Confidence 44557888888865
No 5
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli} PDB: 4b54_A
Probab=9.51 E-value=8.2e+02 Score=26.53 Aligned_cols=82 Identities=7% Similarity=0.021 Sum_probs=50.5
Q ss_pred EEEEE-----EeCCCCCceEEEEEEEeeeEEEEcccccceeeeeEEEEEeCcEEEEe-ecceeecCccEEEEEEEeecCC
Q 000108 738 EVHLC-----MSTGETFPSLHGQLDITGLAFRIFDAPSSFSDISTSLCFRGQRIFLH-NASGWFGSVPLEASGDFGIHPE 811 (2184)
Q Consensus 738 ~l~i~-----l~~~~~~~~~~G~~~l~~~~~~i~~~p~~~s~i~G~L~f~g~~I~l~-n~~g~~g~i~v~~~G~i~id~e 811 (2184)
.|.|+ +.++ ....|.|+|.+....-. .-+..|+--.-.+..+.+.+..+ .++..-++..+++.| |..|..
T Consensus 77 ~w~i~A~~a~~~~~-~~v~L~gnV~i~~~~~~--~~~~~i~Te~L~~~~~~~~~~Td~~V~i~~~~~~~~g~G-m~~nl~ 152 (175)
T 3my2_A 77 TWSVKADKAKLTND-RMLYLYGHVEVNALVPD--SQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLK-MRGNLR 152 (175)
T ss_dssp EEEEECSEEEECTT-SEEEEEEEEEEEECSSS--CSEEEEEEEEEEEETTTCEEEEEEEEEEEESSCEEEEEE-EEEETT
T ss_pred eEEEEeCeEEECCC-CEEEEECCEEEEECCCC--CCCeEEEeCcEEEECCCCEEecCCCEEEEcCCCEEEEEE-EEEEcc
Confidence 46666 2234 45679999988875211 11222333334444445666553 344455667788888 789999
Q ss_pred CceEEEEEecCc
Q 000108 812 EGEFHLMCQVPC 823 (2184)
Q Consensus 812 ~g~f~L~~~v~~ 823 (2184)
++.+.|.-+|.+
T Consensus 153 ~~~~~L~~~Vr~ 164 (175)
T 3my2_A 153 SKNAELIEKVRT 164 (175)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCEEEEccceEE
Confidence 999999888765
No 6
>2jn9_A YKVR protein; SR358, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: b.45.3.1
Probab=7.17 E-value=1.1e+02 Score=30.57 Aligned_cols=18 Identities=33% Similarity=0.741 Sum_probs=16.6
Q ss_pred cccccccccCCccccchh
Q 000108 341 ERSFGVKIPGSGLRFWSK 358 (2184)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~ 358 (2184)
|+-|.|++|..+|.||-.
T Consensus 47 ~~tF~V~vPE~~l~Frgt 64 (105)
T 2jn9_A 47 EKTFNVEVPERDLAFRGE 64 (105)
T ss_dssp CSCEEEEETTTTEEEEEB
T ss_pred hceeeeEcccccceeeEE
Confidence 999999999999999943
No 7
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=6.55 E-value=1.2e+02 Score=22.54 Aligned_cols=9 Identities=56% Similarity=1.210 Sum_probs=6.8
Q ss_pred hcchhhhhc
Q 000108 96 KSLEPLWKE 104 (2184)
Q Consensus 96 ~~~~~~~~~ 104 (2184)
.-|+|+||.
T Consensus 8 aklaplwka 16 (26)
T 2l9a_X 8 AKLAPLWKA 16 (26)
T ss_dssp SSSCTHHHH
T ss_pred HHHhHHHHH
Confidence 568899974
No 8
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=6.26 E-value=98 Score=34.65 Aligned_cols=18 Identities=39% Similarity=0.735 Sum_probs=6.2
Q ss_pred ccccCccccccccccccc
Q 000108 319 MHWGDHHCMDTGVDYDMK 336 (2184)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~ 336 (2184)
||.|.||.|..|+....+
T Consensus 1 ~~~~~~~~~~~g~~v~F~ 18 (196)
T 2ajg_A 1 MHHHHHHAMGEGVEITFN 18 (196)
T ss_dssp ----------CEEEEEEE
T ss_pred CCcccccccCceEEEEEE
Confidence 799999999999887764
No 9
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=6.26 E-value=7.9e+02 Score=27.42 Aligned_cols=90 Identities=14% Similarity=0.191 Sum_probs=52.5
Q ss_pred cccchhHHHHHhHHhccccceeeeeEEecceeEe-----eeeccCCCCCCCcee----eeeeeEEEeecceeeccc----
Q 000108 138 TKLLPSVCSMLSEYIQRDIDFGKVRRVSPLSITL-----ESCSIGPHSEEFSCG----EVHTMKLRVHPFASLRRG---- 204 (2184)
Q Consensus 138 ~~l~p~~~~~ls~~~~r~v~~g~v~~~s~~~~~l-----~~~si~~~~~~~~~~----~~~~~~~~~~p~~~l~~~---- 204 (2184)
+-.+|+|.... +.++.. +| +.|+++-+ |..+|+.|.+...++ .|-.|.+.- +=.+.++.
T Consensus 78 ~pwp~~L~~l~-~~~~~~--~g----~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IasvSLG~-~~~f~~~~~~~~ 149 (204)
T 3s57_A 78 KPWIPVLERIR-DHVSGV--TG----QTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGA-SRDFVFRHKDSR 149 (204)
T ss_dssp EECCHHHHHHH-HHHHHH--HC----CCCSEEEEEEESSTTCCEEEECCCCTTBCTTCCEEEEEEES-CEEEEEEEGGGC
T ss_pred CCCCHHHHHHH-HHHHHH--hC----CCCceeEEEEECCCCCcccceecChhhccCCCcEEEEECCC-ceEEEEEEcCCC
Confidence 34577776544 333321 12 34444432 556999999987654 333333321 22222221
Q ss_pred -------eeEEEEEecCceEEEEecCCCc-cc-cccCCCC
Q 000108 205 -------KIVIDAVLSHPTVLIAQKKDFS-WL-GLPSSEG 235 (2184)
Q Consensus 205 -------~~~~~~~~~~p~~~~~q~~~~~-wl-~~~~~~~ 235 (2184)
.-.+++.|.|-+++|-....-. |. +||..+.
T Consensus 150 ~~~~~~~~~~~~~~L~~GsllvM~g~~q~~w~H~Ip~~~~ 189 (204)
T 3s57_A 150 GKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKK 189 (204)
T ss_dssp SSSCSCCCCCEEEEECTTEEEEEETTHHHHEEEEECCCTT
T ss_pred ccccccCCceEEEECCCCCEEEECchhhheeEeeccccCC
Confidence 1358899999999999887655 87 6888764
No 10
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=5.78 E-value=1.3e+02 Score=29.98 Aligned_cols=14 Identities=50% Similarity=0.828 Sum_probs=2.9
Q ss_pred ccccccCcccccccc
Q 000108 317 DKMHWGDHHCMDTGV 331 (2184)
Q Consensus 317 ~~~~~~~~~~~~~~~ 331 (2184)
+|.| |.||+||.++
T Consensus 4 ~~~~-~~~~~~~~~l 17 (95)
T 1vmg_A 4 DKIH-HHHHHMDLEL 17 (95)
T ss_dssp ----------CCCCH
T ss_pred cccc-hhhhhccccH
Confidence 4566 6677776544
Done!