Query 000108
Match_columns 2184
No_of_seqs 314 out of 681
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 16:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000108.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000108hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gwma_ b.18.1.19 (A:) Non-cat 35.2 44 0.0032 31.9 7.6 95 632-744 28-128 (153)
2 d1mhxa_ d.15.7.1 (A:) Immunogl 14.5 21 0.0015 30.2 0.6 11 319-329 1-11 (65)
3 d2v89a1 g.50.1.2 (A:1414-1487) 11.8 25 0.0018 30.3 0.2 28 302-329 21-48 (74)
4 d1y0ga_ b.61.6.1 (A:) Lipid bi 5.9 7.5E+02 0.055 23.9 9.1 51 777-831 12-65 (169)
5 d2v7qi1 a.137.8.1 (I:1-47) Eps 4.0 60 0.0044 26.4 -1.1 20 55-88 11-30 (47)
6 d1wv3a1 b.26.1.4 (A:1-78) Prot 3.9 1.7E+02 0.012 24.5 1.5 25 594-618 29-53 (78)
7 d2c4ba2 g.3.2.1 (A:117-144) Tr 3.9 1.6E+02 0.011 20.5 1.1 16 32-47 6-23 (28)
8 d2jn9a1 b.45.3.1 (A:2-97) Unch 3.8 1.1E+02 0.0083 27.4 0.4 16 341-356 46-61 (96)
9 d1rk8c_ b.72.3.1 (C:) Pym (Wit 3.7 1.4E+02 0.011 21.9 0.8 9 220-228 14-22 (33)
10 d2iuwa1 b.82.2.10 (A:70-279) A 3.6 2.8E+02 0.021 28.0 3.6 104 129-235 74-195 (210)
No 1
>d1gwma_ b.18.1.19 (A:) Non-catalytic protein 1, Ncp1 {Piromyces equi [TaxId: 99929]}
Probab=35.21 E-value=44 Score=31.87 Aligned_cols=95 Identities=12% Similarity=0.292 Sum_probs=58.7
Q ss_pred ceEEEECcEEEEEecC-CCCcEEEEeeeeEEEEecccceEEEEEeeeeeccccccccCCCCeEEEEEEEccccceEEEE-
Q 000108 632 DSVHFKGGTLMLLAYG-DREPREMENASGHVKFQNHYGRVHVQVSGNCKMWRSDTISGDGGWLSADVFVDSIEQQWHGN- 709 (2184)
Q Consensus 632 ~~V~i~~g~~~L~~~g-~~~p~~l~~vnG~v~~~~~~~~i~~dl~G~~~~~~~~~~~~~Gg~l~~~g~~~~~~q~~~l~- 709 (2184)
-++.+.++.+.|.|+- .-..+.|++.+|+.+ ++-|++|+. +-|.|++.+.--.....+++.
T Consensus 28 ~~~S~~~~s~ii~~~~~~YGAiSLK~~~~~~r----GG~i~~~~K-------------~EG~VKi~V~~~~~~E~F~V~s 90 (153)
T d1gwma_ 28 CTLSYYGGAMIINPQEGKYGAVSLKRNSGSFR----GGSLRFDMK-------------NEGKVKILVENSEADEKFEVET 90 (153)
T ss_dssp EEEEEETTEEEEEECTTSCCEEEEEESSCCBC----SSEEEEEEE-------------ESSCEEEEEEETTTTEEEEEEE
T ss_pred ceEEecCCeEEEcCCCCccceEEeeccCCCcc----CceEEEEEe-------------cCcEEEEEEecCCcccceeeee
Confidence 3678999999999864 244889999988874 578888887 245666664444434444432
Q ss_pred EEEeccChhhhhcc-cccc---EEEeeeeeeeEEEEEEe
Q 000108 710 LKIMNLFVPLFERI-LEIP---IMWSKGRATGEVHLCMS 744 (2184)
Q Consensus 710 l~~~~l~a~~i~~l-l~lP---i~i~~G~~dg~l~i~l~ 744 (2184)
++...-+...+-.+ .++| |.+|.|-+++ .+|+|+
T Consensus 91 ~~~S~~~~~Y~~~VD~~~~FDRI~~QD~P~~~-~~I~~r 128 (153)
T d1gwma_ 91 ISPSDEYVTYILDVDFDLPFDRIDFQDAPGNG-DRIWIK 128 (153)
T ss_dssp ECCEEEEEEEEEECCCSSCBCEEEEEETTCSC-CCEEEE
T ss_pred eccccccEEEEEeccCcccccEEEEecCCCCC-CeEEEE
Confidence 22233333333333 3455 7788777764 566654
No 2
>d1mhxa_ d.15.7.1 (A:) Immunoglobulin-binding protein G, different constituent domains {Streptococcus sp., group G [TaxId: 1306]}
Probab=14.52 E-value=21 Score=30.20 Aligned_cols=11 Identities=64% Similarity=0.984 Sum_probs=6.1
Q ss_pred ccccCcccccc
Q 000108 319 MHWGDHHCMDT 329 (2184)
Q Consensus 319 ~~~~~~~~~~~ 329 (2184)
||.|.||.|||
T Consensus 1 mhhhhhha~~T 11 (65)
T d1mhxa_ 1 MHHHHHHAMDT 11 (65)
T ss_dssp CCCCCCCCCEE
T ss_pred CCcccccccee
Confidence 45555555554
No 3
>d2v89a1 g.50.1.2 (A:1414-1487) V(D)J recombination-activating protein 2, Rag2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.76 E-value=25 Score=30.33 Aligned_cols=28 Identities=32% Similarity=0.559 Sum_probs=26.0
Q ss_pred ccccccccCCcccccccccccCcccccc
Q 000108 302 HSTKLAISENFKCMDDKMHWGDHHCMDT 329 (2184)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (2184)
-||++..+.-.||....-||-.-+|||.
T Consensus 21 YsTEl~kPamIfCs~g~GHWVHaqCm~L 48 (74)
T d2v89a1 21 YSTELNKPAMIYCSHGDGHWVHAQCMDL 48 (74)
T ss_dssp STTCSSSCCEEEECSTTCEEEETGGGTC
T ss_pred cccccCCceEEEEECCCceEeehhhccc
Confidence 7899999999999998899999999985
No 4
>d1y0ga_ b.61.6.1 (A:) Lipid binding protein YceI {Escherichia coli [TaxId: 562]}
Probab=5.95 E-value=7.5e+02 Score=23.90 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=31.6
Q ss_pred EEEEEeCcEEEEeecceeecCccEEEEEEEeecCC---CceEEEEEecCccchHHHHh
Q 000108 777 TSLCFRGQRIFLHNASGWFGSVPLEASGDFGIHPE---EGEFHLMCQVPCVEVNALMR 831 (2184)
Q Consensus 777 G~L~f~g~~I~l~n~~g~~g~i~v~~~G~i~id~e---~g~f~L~~~v~~V~v~~l~~ 831 (2184)
..+.|..+.+-+..+.|.|..+. |.+.+|++ ...+++.+.+.+++..+-..
T Consensus 12 S~V~F~v~~~g~s~~~G~f~~~~----g~i~~d~~~~~~~~~~v~vd~~Si~t~~~~r 65 (169)
T d1y0ga_ 12 AFVNFRIQHLGYSWLYGTFKDFD----GTFTFDEKNPAADKVNVTINTTSVDTNHAER 65 (169)
T ss_dssp EEEEEEEEETTTEEEEEEECCEE----EEEECCSSCGGGCEEEEEEEGGGEECSCHHH
T ss_pred eEEEEEEEEeEEEEEEEEECcEE----EEEEECCCCccccEEEEEEEeccccCCChHH
Confidence 45666655544456678888744 44556544 45688888888777544433
No 5
>d2v7qi1 a.137.8.1 (I:1-47) Epsilon subunit of mitochondrial F1F0-ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.03 E-value=60 Score=26.44 Aligned_cols=20 Identities=35% Similarity=0.800 Sum_probs=14.3
Q ss_pred hhhcccccCCCchhhhhcccccCCceeeeeccCc
Q 000108 55 AVRFSHFCGKNVELLRKSIGSRNGLVVSCVKEPF 88 (2184)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (2184)
-+|||+.|.+ ++|+ |+|+||
T Consensus 11 Yi~Ys~iaA~---~vR~-----------aLK~e~ 30 (47)
T d2v7qi1 11 YIRYSQICAK---AVRD-----------ALKTEF 30 (47)
T ss_dssp HHHHHHHHHH---HHHT-----------TBCTTT
T ss_pred HHHHHHHHHH---HHHH-----------HhChHH
Confidence 3688888874 4565 778886
No 6
>d1wv3a1 b.26.1.4 (A:1-78) Protein EssC {Staphylococcus aureus [TaxId: 1280]}
Probab=3.92 E-value=1.7e+02 Score=24.45 Aligned_cols=25 Identities=8% Similarity=-0.175 Sum_probs=17.0
Q ss_pred cceeeeeeeecceeEEEEecCccce
Q 000108 594 KELKSGVAPNVEDVVAELVDGVYIV 618 (2184)
Q Consensus 594 ~~l~~~vt~~~p~~~i~q~~dg~Wi 618 (2184)
+.+.....--...+|+||.++|.|-
T Consensus 29 eraditlkslgevihleqnnqgtwq 53 (78)
T d1wv3a1 29 ERADITLKSLGEVIHLEQNNQGTWQ 53 (78)
T ss_dssp TTSSEECTTCCCCEEEEECTTSCEE
T ss_pred cccceehhhhhheEEeeecCcccee
Confidence 3333333334567999999999994
No 7
>d2c4ba2 g.3.2.1 (A:117-144) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=3.91 E-value=1.6e+02 Score=20.50 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=11.0
Q ss_pred ccccccccce--eeeccc
Q 000108 32 GKCARRVSHK--CKCEKN 47 (2184)
Q Consensus 32 ~~~~~~~~~~--~~~~~~ 47 (2184)
+|++|-+-|- |.|.++
T Consensus 6 kkcrrdsdclagcvcgpn 23 (28)
T d2c4ba2 6 KKCRRDSDCLAGCVCGPN 23 (28)
T ss_dssp CBCSSGGGSCTTCEECTT
T ss_pred HHhcccccccccceecCC
Confidence 3466666665 888877
No 8
>d2jn9a1 b.45.3.1 (A:2-97) Uncharacterized protein YkvR {Bacillus subtilis [TaxId: 1423]}
Probab=3.82 E-value=1.1e+02 Score=27.44 Aligned_cols=16 Identities=38% Similarity=0.800 Sum_probs=15.3
Q ss_pred cccccccccCCccccc
Q 000108 341 ERSFGVKIPGSGLRFW 356 (2184)
Q Consensus 341 ~~~~~~~~~~~~~~~~ 356 (2184)
|+-|-|++|..||.|-
T Consensus 46 e~~FdV~vPE~~l~Fr 61 (96)
T d2jn9a1 46 EKTFNVEVPERDLAFR 61 (96)
T ss_dssp CSCEEEEETTTTEEEE
T ss_pred hcceeeecCcchhhhh
Confidence 9999999999999995
No 9
>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.67 E-value=1.4e+02 Score=21.93 Aligned_cols=9 Identities=22% Similarity=0.637 Sum_probs=7.8
Q ss_pred EecCCCccc
Q 000108 220 AQKKDFSWL 228 (2184)
Q Consensus 220 ~q~~~~~wl 228 (2184)
-|++||+|-
T Consensus 14 tqRpDGtWR 22 (33)
T d1rk8c_ 14 TKRPDGTWR 22 (33)
T ss_dssp EECTTSCEE
T ss_pred ccCCCCccc
Confidence 599999997
No 10
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.65 E-value=2.8e+02 Score=27.99 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=57.7
Q ss_pred eccceeeeecccchhHHHHHhHHhcc-ccceeeeeEEecceeEeeeeccCCCCCCCcee----eeeeeEEE-eeccee--
Q 000108 129 QRKAKSFIETKLLPSVCSMLSEYIQR-DIDFGKVRRVSPLSITLESCSIGPHSEEFSCG----EVHTMKLR-VHPFAS-- 200 (2184)
Q Consensus 129 ~~~~~~~~~~~l~p~~~~~ls~~~~r-~v~~g~v~~~s~~~~~l~~~si~~~~~~~~~~----~~~~~~~~-~~p~~~-- 200 (2184)
|.+........++|+|......+... .+ +....-++.-.-|..+|++|.++..+. .|-++-+. =+.|.+
T Consensus 74 y~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~ 150 (210)
T d2iuwa1 74 YSRITMEPNPHWHPVLRTLKNRIEENTGH---TFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRK 150 (210)
T ss_dssp SCHHHHCCBSSCCHHHHHHHHHHHHHHSC---CCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEE
T ss_pred ccccccccCCCCcHHHHHHHHhhhhhcCc---cchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEcc
Confidence 33333333455677887765544443 11 223344455556789999999976543 23333321 122222
Q ss_pred --------eccceeEEEEEecCceEEEEecC-CCccc-cccCCCC
Q 000108 201 --------LRRGKIVIDAVLSHPTVLIAQKK-DFSWL-GLPSSEG 235 (2184)
Q Consensus 201 --------l~~~~~~~~~~~~~p~~~~~q~~-~~~wl-~~~~~~~ 235 (2184)
.-+..-.+++.|.+=+++|.... ...|. +||.-+.
T Consensus 151 ~~~~~~~~~~~~~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~ 195 (210)
T d2iuwa1 151 KPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYH 195 (210)
T ss_dssp CCC--------CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSS
T ss_pred ccccccCCccCCCceEEEEcCCCCEEEeCchhhCceEccCCccCC
Confidence 12233467888888888888765 35687 6876554
Done!