BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000110
         (2163 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
            Acetobutylicum With Bound Guanine In The Active Site
 pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
            Acetobutylicum With Bound Guanine In The Active Site
          Length = 439

 Score = 33.1 bits (74), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 33/143 (23%)

Query: 1137 LVEKSINLSCLKCRLILE--------------VTVDQQLGDLSRS----YSG---CDDRG 1175
            L+EK INL   K  LI                V +D ++  +S +    Y G    D R 
Sbjct: 3    LLEKDINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRN 62

Query: 1176 NTLIERLSNAE---KLYKS---ALDKLNLSEWKNSISLPEEARSESILPKKPSIQN---- 1225
            N +I  +++       YK+    +DK  L  W N+ + PEEA+  ++   K +       
Sbjct: 63   NIIIPGMNDLHAHASQYKNLGIGMDK-ELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKD 121

Query: 1226 -VEHGAGNTFVHSTLHQPDTVEL 1247
             +++G     + +TLH+  T+EL
Sbjct: 122  LIKNGTTRVALFATLHKDSTIEL 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,128,059
Number of Sequences: 62578
Number of extensions: 2337871
Number of successful extensions: 4995
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4986
Number of HSP's gapped (non-prelim): 13
length of query: 2163
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2049
effective length of database: 7,839,445
effective search space: 16063022805
effective search space used: 16063022805
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)