Query 000110
Match_columns 2163
No_of_seqs 213 out of 268
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 18:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5155 ESP1 Separase, a prote 100.0 1.9E-89 4E-94 828.7 26.9 450 1603-2158 1155-1621(1622)
2 PF03568 Peptidase_C50: Peptid 100.0 3.7E-85 8E-90 777.7 32.8 368 1638-2059 3-383 (383)
3 KOG1849 Regulator of spindle p 100.0 2.7E-78 5.9E-83 771.3 18.1 1287 20-2029 11-1319(1319)
4 PF12770 CHAT: CHAT domain 99.3 1.7E-11 3.7E-16 139.7 16.6 185 1873-2071 23-250 (287)
5 KOG1849 Regulator of spindle p 99.1 1.2E-11 2.6E-16 162.8 -0.4 234 1876-2156 956-1192(1319)
6 PF01364 Peptidase_C25: Peptid 84.4 2.8 6E-05 51.9 8.2 96 1973-2071 226-332 (378)
7 PRK11788 tetratricopeptide rep 81.8 17 0.00036 44.0 13.1 52 942-995 158-209 (389)
8 PRK11447 cellulose synthase su 75.3 20 0.00044 50.8 12.7 152 946-1196 590-741 (1157)
9 PRK02603 photosystem I assembl 71.1 32 0.00069 37.9 10.5 104 964-1137 33-136 (172)
10 PF13424 TPR_12: Tetratricopep 70.8 10 0.00022 36.1 5.9 66 1111-1194 9-74 (78)
11 PF13374 TPR_10: Tetratricopep 68.0 8.7 0.00019 31.9 4.2 35 968-1002 4-38 (42)
12 TIGR02521 type_IV_pilW type IV 66.8 1.1E+02 0.0023 33.1 13.2 32 964-995 29-60 (234)
13 PF13424 TPR_12: Tetratricopep 64.9 20 0.00044 34.0 6.6 71 1068-1138 6-77 (78)
14 TIGR02917 PEP_TPR_lipo putativ 63.6 3E+02 0.0066 36.3 18.7 227 882-1196 641-867 (899)
15 cd00189 TPR Tetratricopeptide 54.4 76 0.0016 28.1 8.0 61 1069-1135 36-96 (100)
16 PRK11788 tetratricopeptide rep 51.5 1.6E+02 0.0035 35.8 12.7 116 941-1136 196-311 (389)
17 CHL00033 ycf3 photosystem I as 49.7 1.1E+02 0.0023 33.6 9.8 111 959-1139 28-145 (168)
18 KOG1840 Kinesin light chain [C 45.2 1E+02 0.0023 40.7 10.2 124 1073-1197 247-398 (508)
19 TIGR00990 3a0801s09 mitochondr 45.0 1.1E+02 0.0023 40.6 10.5 95 1069-1194 367-461 (615)
20 COG4995 Uncharacterized protei 43.5 1.1E+02 0.0024 39.7 9.8 188 1872-2071 160-379 (420)
21 CHL00033 ycf3 photosystem I as 43.3 66 0.0014 35.2 7.0 64 1071-1137 39-102 (168)
22 PF14538 Raptor_N: Raptor N-te 42.1 47 0.001 37.5 5.7 59 1965-2023 64-147 (154)
23 TIGR02917 PEP_TPR_lipo putativ 42.0 9.8E+02 0.021 31.8 23.8 94 1070-1195 706-799 (899)
24 TIGR02521 type_IV_pilW type IV 41.5 92 0.002 33.5 7.7 97 1068-1195 32-128 (234)
25 TIGR00990 3a0801s09 mitochondr 41.0 89 0.0019 41.3 8.9 93 1071-1194 403-495 (615)
26 smart00115 CASc Caspase, inter 40.7 46 0.001 39.4 5.7 50 1953-2003 32-92 (241)
27 cd00189 TPR Tetratricopeptide 38.3 99 0.0022 27.4 6.2 62 1070-1137 3-64 (100)
28 PF13181 TPR_8: Tetratricopept 36.9 43 0.00093 27.2 3.3 26 1112-1137 6-31 (34)
29 PF07719 TPR_2: Tetratricopept 36.6 68 0.0015 25.8 4.4 29 967-995 2-30 (34)
30 cd05844 GT1_like_7 Glycosyltra 35.8 2.2E+02 0.0048 34.0 10.3 116 1944-2068 198-332 (367)
31 PF13432 TPR_16: Tetratricopep 34.8 1E+02 0.0023 28.3 5.9 60 1071-1136 1-60 (65)
32 PF00656 Peptidase_C14: Caspas 33.0 42 0.00092 38.3 3.7 44 1953-1996 24-78 (248)
33 PF13181 TPR_8: Tetratricopept 27.8 1.1E+02 0.0024 24.8 4.3 30 967-996 2-31 (34)
34 PF13176 TPR_7: Tetratricopept 26.4 77 0.0017 27.0 3.2 24 1111-1134 3-26 (36)
35 cd05804 StaR_like StaR_like; a 25.7 3.8E+02 0.0083 32.3 10.1 102 963-1133 111-212 (355)
36 PRK02603 photosystem I assembl 24.3 2.5E+02 0.0054 31.1 7.6 67 1069-1138 37-103 (172)
37 PF13414 TPR_11: TPR repeat; P 24.0 1E+02 0.0022 28.6 3.9 62 1069-1136 5-67 (69)
38 TIGR02552 LcrH_SycD type III s 23.5 1.4E+02 0.0029 31.0 5.1 81 1068-1154 52-133 (135)
39 cd04962 GT1_like_5 This family 22.6 4.3E+02 0.0094 31.6 9.7 108 1944-2068 207-332 (371)
40 PRK11189 lipoprotein NlpI; Pro 22.6 4.5E+02 0.0097 32.0 9.9 121 935-1135 40-160 (296)
41 PF09976 TPR_21: Tetratricopep 22.3 1.9E+02 0.0041 31.2 6.1 118 941-1133 27-144 (145)
42 KOG1349 Gpi-anchor transamidas 21.1 61 0.0013 39.4 2.2 57 1943-2005 99-159 (309)
43 PF07719 TPR_2: Tetratricopept 21.1 1.2E+02 0.0025 24.4 3.2 25 1112-1136 6-30 (34)
44 cd03795 GT1_like_4 This family 20.6 2.2E+02 0.0047 33.6 6.6 38 2031-2068 276-328 (357)
45 cd03796 GT1_PIG-A_like This fa 20.5 2.5E+02 0.0055 34.9 7.4 111 1943-2068 202-329 (398)
No 1
>COG5155 ESP1 Separase, a protease involved in sister chromatid separation [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-89 Score=828.71 Aligned_cols=450 Identities=26% Similarity=0.421 Sum_probs=370.9
Q ss_pred HHHHHHHccCCCc-cEEEEEeeccchhhhhhhccCCCccccceEEEEeecCCCCCEEEEecCCCccccCCCCCCcccchh
Q 000110 1603 QFVKDFLLSLPCT-TVICVTLLGGAYTRLLQELLPLPSCVHAWMMLSRFNSINQPIVVLLPVNAVLQEDADYDDDDAITS 1681 (2163)
Q Consensus 1603 ~F~kdyid~LP~~-tVIsISL~~~~~~~ll~el~~~P~~~~awLlISRl~~g~~P~vlRLPL~R~~srd~Dee~~sf~~g 1681 (2163)
+|+..+.|.+|+. ++|+|++.-+. ++ ++|||+++++.|.++||||-|+++||.||+.+.|
T Consensus 1155 r~~~~~~ds~~s~ln~v~iti~nc~-----~~-----------L~vsKi~~~h~p~~~RlPliR~NSrDldE~il~f--- 1215 (1622)
T COG5155 1155 RLNRGVEDSCKSRLNFVAITILNCT-----GK-----------LVVSKIGGVHGPTHLRLPLIRSNSRDLDEMILPF--- 1215 (1622)
T ss_pred EeccchhhhcccccceEEEEEeccc-----cc-----------eeeeeccCcCCCccccCccccccccchhhhhccH---
Confidence 3888999999986 89999997762 23 5999999999999999999999999998754442
Q ss_pred hhhhhhhhcCCCCCCCCCCcchHhhHHHHHHHHHHhhhhc-c-cCCCCCChhhHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000110 1682 FRELREIKDCGKNWHCPWGSTIADDVAPAFKLIMEDNYLS-S-RSSYGDSLGQRSLWWNRRTKLDQRLCEFLRKLEDSWL 1759 (2163)
Q Consensus 1682 ~~e~~ei~~~~k~w~cpwGytvvDdVa~eF~~IIeEN~~S-t-ss~~~~TkedRk~WWk~R~aLD~RLk~LL~nIE~~WL 1759 (2163)
.+...++..||.++++. . .....+++|+|+.||.+|++||++|+.|++|||..|+
T Consensus 1216 -----------------------~~A~~el~~Iin~snq~~a~~~~~~~~RE~rkTWW~eR~~Ld~~~qqll~nieisw~ 1272 (1622)
T COG5155 1216 -----------------------HVAVNELKVIINRSNQNLALKDEMSNLREIRKTWWLERFALDRPSQQLLDNIEISWR 1272 (1622)
T ss_pred -----------------------HHHHHHHHHHHhhhhhhHHhhcchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 22345778899887663 2 2367789999999999999999999999999999999
Q ss_pred hcccccccCccCCcchHHHHHHHHHHhhhhc-------cCcccChhHHHHHHCCCCCCCchHHHHHHHhhc-cC--ccc-
Q 000110 1760 GPWKYMLLGEWSNCKNLDTVHKKLVRDLKCK-------CKANINESLLRIVLGGLKGAFKGEECIAQLCFK-KG--CYV- 1828 (2163)
Q Consensus 1760 GgfKGLLlg~~sd~~~le~~~k~Lv~~L~Sk-------~k~~ld~~LLkliLg~~~~~~d~ee~L~dLl~~-~~--~y~- 1828 (2163)
||++|+|+|+..|..+++++.+.+.+.++.. ....+-+.++++++...+...+.++.+.||+++ .| .|.
T Consensus 1273 ~G~~gvfsp~~ID~SLf~kf~~~F~~I~~~Nf~~~K~~~np~l~~~viELFl~L~P~~~~~~~~leDliyf~LDi~~f~g 1352 (1622)
T COG5155 1273 LGRYGVFSPYCIDGSLFIKFFKGFIRIDKDNFRGAKTRMNPILARWVIELFLKLNPQEIDSRDILEDLIYFGLDIARFWG 1352 (1622)
T ss_pred cccceecchhhcchHHHHHHHHHHHHHHHhhCccccccCCchhhHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988776432 123344557788887666667777777777632 11 111
Q ss_pred cccccccCcccCCcccccccccchHHHHHHHHHHHHhhhccCCCCCCcEEEEeCcccccccccccCCCCCccccccCChH
Q 000110 1829 GTVGYSDNSSCGTSSEASNGVERLSELALQLIHKAVDELEDDSGHREPTILVLDCEVQMLPWENIPILRNHEVYRMPSVG 1908 (2163)
Q Consensus 1829 ~r~~YdeiD~l~~~se~~d~i~v~~~~al~lih~A~~el~~~~~~r~hvILVLDk~L~~fPWESLP~Lr~~sVSRmPSL~ 1908 (2163)
.+++|||+|+. +. .-+.++.|.++.+.+. ...+.|||||||+.+|.||||+||||++++||||||+.
T Consensus 1353 ~~~AYDEID~d---------~l--~~~l~~~i~~yfn~~~--~~s~~htiLVld~S~h~FPwEsLp~l~~~SV~RVPSl~ 1419 (1622)
T COG5155 1353 QRNAYDEIDLD---------AL--LGKLLSDIGSYFNGLS--VGSIKHTILVLDESTHEFPWESLPVLRNKSVYRVPSLE 1419 (1622)
T ss_pred hhhccchhhhH---------HH--HHHHHHHHHHHhcccc--ccceeeEEEEEcCccccCchhhhhhhcccceeecChHH
Confidence 35788888752 11 1255566777777662 34789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhccccCCcccccCCCcEEEECCCCChHHHHHHHHH-HHhcCCccc--ccCCCCCHHHHHHHHhcC
Q 000110 1909 SIAATLERIHRHEQLVKGLLATFPLIDPLDAFYLLNPSGDLSETQLLFED-WFRDQNLVG--KAGSAPTAEELTLALKSH 1985 (2163)
Q Consensus 1909 ~L~~~L~r~~~~~~~~~~~~~~~~~VD~~~~~YILNPsGDL~~TQ~rF~~-~f~~~~W~G--ivGr~PseeE~~~aL~~~ 1985 (2163)
+|.+++.+.+-+ .++..+..++++|||||+|||++||++|+. -|-..+|.| ++|+ |+++.+.++|.++
T Consensus 1420 ~L~~~ls~F~~~--------~~~~~~~~~~~syILnP~~dL~~Tqe~f~g~K~~e~~~~~~lV~~~-P~~~~~~Kml~g~ 1490 (1622)
T COG5155 1420 YLENALSSFHYQ--------LPLQGASGRSFSYILNPENDLPKTQERFAGQKFLESSGITNLVTGR-PPSDLECKMLDGC 1490 (1622)
T ss_pred HHHHHHhhheec--------ccceeeeccceeEEeCCCCCCchhHHHhcccceeecCCccccccCC-CCcHHHHHhhcCC
Confidence 999988875411 223345567899999999999999999994 454567764 7888 7777789999999
Q ss_pred CeEEEeeccccccccchhhhccccccccEEEecCCccccccCCCCCCCchHHHHHhcCCceeeeecccCChhhHHHHHHH
Q 000110 1986 DLFIYLGHGSGSQYISRHDLLKLEKCAATFLMGCSSGSLSLNGCYIPQGTPLSYLLAGSPVIVANLWDVTDKDIDRFGKT 2065 (2163)
Q Consensus 1986 DLFLYfGHGsGeQYI~~~~I~rL~~CAasLLmGCSSg~L~~~G~fEP~Gt~l~YLlAGcP~VVGNLWDVTDkDIDRFt~~ 2065 (2163)
|+|+|||||||+||+++.+|+++.+||+++|||||||+|.+.|.|||+||++.||.+|||+||||||||||||||+|+.+
T Consensus 1491 d~flYfGHGgGeQY~~s~ei~~~~~~a~~~L~GCSS~al~~~g~~ep~Gtil~yL~~GcpmvvgnLWDVTDKDID~FS~~ 1570 (1622)
T COG5155 1491 DVFLYFGHGGGEQYLKSSEIKKCGEGATMLLFGCSSVALLCMGNYEPNGTILKYLRRGCPMVVGNLWDVTDKDIDSFSAR 1570 (1622)
T ss_pred CEEEEEecCCcceeeeHhhhhhhcccceeEEecCcHHHHHHhccCCCCCcHHHHHhcCCCeeeeeccccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCcchhhhhcCCCcccccccccCCCCCcccccccCCCCCCCCCHHHHHHHHhhcCCccCccc
Q 000110 2066 MLDAWLRERSSVPVGCDQCSSVQDEAKNGRGKVNKKRMSRKKLPETSDISLCNNGCDHRPKLGSFMGQAREACKLPFLIG 2145 (2163)
Q Consensus 2066 LLe~W~~~~s~~~~~~~~c~~l~~e~~~gkG~~~k~~~~~k~~~~~~d~s~~~~~c~~~~sL~eAVa~AR~aCkLkYLnG 2145 (2163)
++|.||.. |+.+ +.. ...++..||+++|+.|+||||||
T Consensus 1571 i~es~g~~----------cns~---------------------~~~-----------NS~Sv~~AVS~sR~~chLRYLNG 1608 (1622)
T COG5155 1571 IIESLGSG----------CNSL---------------------GEL-----------NSLSVSYAVSRSRDGCHLRYLNG 1608 (1622)
T ss_pred HHHHhccc----------cccc---------------------ccc-----------cchhhhhhhhhccCceEEeecCC
Confidence 99999742 3211 110 13468899999999999999999
Q ss_pred cccEEeccceeee
Q 000110 2146 AAPVCYGVPTGIR 2158 (2163)
Q Consensus 2146 AApVVYGIPv~i~ 2158 (2163)
||||+||+|.++-
T Consensus 1609 AApVIYGlp~~~v 1621 (1622)
T COG5155 1609 AAPVIYGLPIKFV 1621 (1622)
T ss_pred CCceEecceeeec
Confidence 9999999999873
No 2
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=100.00 E-value=3.7e-85 Score=777.70 Aligned_cols=368 Identities=39% Similarity=0.668 Sum_probs=303.1
Q ss_pred CccccceEEEEeecCCCCCEEEEecCCCccccCCCCCCcccchhhhhhhhhhcCCCCCCCCCCcchHhhHHHHHHHHHHh
Q 000110 1638 PSCVHAWMMLSRFNSINQPIVVLLPVNAVLQEDADYDDDDAITSFRELREIKDCGKNWHCPWGSTIADDVAPAFKLIMED 1717 (2163)
Q Consensus 1638 P~~~~awLlISRl~~g~~P~vlRLPL~R~~srd~Dee~~sf~~g~~e~~ei~~~~k~w~cpwGytvvDdVa~eF~~IIeE 1717 (2163)
+...++||+|||+++|++|+++||||+|.++|++++ + .++.+|++|+++
T Consensus 3 ~~~~~~~LllsRl~~~~~P~~lrLPl~r~~~~~~~~---~----------------------------~~~~el~~Ii~e 51 (383)
T PF03568_consen 3 ICEDSGDLLLSRLEKGSSPIVLRLPLDRHSSRDGDE---E----------------------------EALEELQSIIEE 51 (383)
T ss_pred cCCCCCeEEEEeecCCCCCEEEEeeCCccccccccH---H----------------------------HHHHHHHHHHHh
Confidence 345688999999999999999999999999998763 1 156789999999
Q ss_pred hhhcccCCCCCChhhHHHHHHHhHHHHHHHHHHHHHHHHhhhhcccccccCccCCcchHHHHHHH----HHHhhhhccCc
Q 000110 1718 NYLSSRSSYGDSLGQRSLWWNRRTKLDQRLCEFLRKLEDSWLGPWKYMLLGEWSNCKNLDTVHKK----LVRDLKCKCKA 1793 (2163)
Q Consensus 1718 N~~Stss~~~~TkedRk~WWk~R~aLD~RLk~LL~nIE~~WLGgfKGLLlg~~sd~~~le~~~k~----Lv~~L~Sk~k~ 1793 (2163)
|+.++.++..+|+++|++||++|++||.||++||++||+.|||||||+|+|...+.+.++++.++ +.++|.++.+.
T Consensus 52 s~~s~~~~~~~t~~~kk~WW~~R~~LD~rL~~LL~~iE~~wLG~wkglf~~~~~~~~~~~~~~~~~~~iL~~~L~s~~~~ 131 (383)
T PF03568_consen 52 SNESTVTSKIKTKEDKKKWWKERKALDSRLKDLLENIENSWLGGWKGLFLGKRRDSSSLEKFRKSFEKILNKHLPSRKKS 131 (383)
T ss_pred hhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccchhhHHHHHHHHHHHHHhccccccc
Confidence 99988557889999999999999999999999999999999999999999988877777666554 44566777788
Q ss_pred ccChhHHHHHHCCCCCCCchHHHHHHHhhc-cC--ccc-cccccccCcccCCcccccccccchHHHHHHHHHHHHhhh--
Q 000110 1794 NINESLLRIVLGGLKGAFKGEECIAQLCFK-KG--CYV-GTVGYSDNSSCGTSSEASNGVERLSELALQLIHKAVDEL-- 1867 (2163)
Q Consensus 1794 ~ld~~LLkliLg~~~~~~d~ee~L~dLl~~-~~--~y~-~r~~YdeiD~l~~~se~~d~i~v~~~~al~lih~A~~el-- 1867 (2163)
++++.+++++++... ....+.+.+|.++ .+ .|. ++++|+++|. ..+...++++++++
T Consensus 132 ~~~~~ll~l~l~~~~--~~~~~~~~dl~~~~~d~L~~~~~~n~~~e~~~---------------~~~~~~l~~~l~~~~~ 194 (383)
T PF03568_consen 132 KLDDRLLELFLGLSS--EDKDEHLEDLIYFILDILQFHGERNAYDEIDL---------------DKIFVLLREALNKYHE 194 (383)
T ss_pred cccHHHHHHHHcccc--chhhhHHhhhhHHHHHHHhccCcccccChhhH---------------HHHHHHHHHHHHHHHh
Confidence 899999999987722 2233333343311 00 011 1234444432 12223344444433
Q ss_pred --ccCCCCCCcEEEEeCcccccccccccCCCCCccccccCChHHHHHHHHHHhhhhhhhccccCCcccccCCCcEEEECC
Q 000110 1868 --EDDSGHREPTILVLDCEVQMLPWENIPILRNHEVYRMPSVGSIAATLERIHRHEQLVKGLLATFPLIDPLDAFYLLNP 1945 (2163)
Q Consensus 1868 --~~~~~~r~hvILVLDk~L~~fPWESLP~Lr~~sVSRmPSL~~L~~~L~r~~~~~~~~~~~~~~~~~VD~~~~~YILNP 1945 (2163)
.....+++|||||||++||.||||+||+|++++||||||+++|..++.+...... ..+..+++.++||||||
T Consensus 195 ~~~~~~~~~~~~iLVlD~~l~~~PwEsl~~l~~~~VsR~pSl~~l~~~~~~~~~~~~------~~~~~~~~~~~~yvlNP 268 (383)
T PF03568_consen 195 MSSSKSSKREHTILVLDKELQSFPWESLPCLRGQSVSRMPSLHFLRDLLKRHSNSRS------PGYESKDPKRGFYVLNP 268 (383)
T ss_pred hhcccccCCCCEEEEECcccccCchhhCccccCCeeEecChHHHHHHHHHHhhhhcc------cccccccccceEEEECC
Confidence 1112258999999999999999999999999999999999999998876532211 23345666789999999
Q ss_pred CCChHHHHHHHHHHHhcCC-cccccCCCCCHHHHHHHHhcCCeEEEeeccccccccchhhhccccccccEEEecCCcccc
Q 000110 1946 SGDLSETQLLFEDWFRDQN-LVGKAGSAPTAEELTLALKSHDLFIYLGHGSGSQYISRHDLLKLEKCAATFLMGCSSGSL 2024 (2163)
Q Consensus 1946 sGDL~~TQ~rF~~~f~~~~-W~GivGr~PseeE~~~aL~~~DLFLYfGHGsGeQYI~~~~I~rL~~CAasLLmGCSSg~L 2024 (2163)
+|||++||++|+++|++.. |+|++|++|+++|+.++|.++|+|||||||||+|||++++|+|+++||++||||||||+|
T Consensus 269 ~gDL~~T~~~~~~~~~~~~~w~g~~g~~P~~~e~~~~l~~~dlf~Y~GHG~G~qy~~~~~i~~~~~~~~~lL~GCsS~~l 348 (383)
T PF03568_consen 269 SGDLKRTEKRFEPFFKSWKGWKGIIGRAPTEEEFLQALTSSDLFLYCGHGSGEQYISGSTIQRLDCCAVSLLMGCSSGRL 348 (383)
T ss_pred CCCHHHHHHHHHHHHhcccCCCceECCCCCHHHHHHHHHhCCeEEEecCCcHHHhCCHhhhccccccCceEEecCCcccc
Confidence 9999999999999999864 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCchHHHHHhcCCceeeeecccCChhhH
Q 000110 2025 SLNGCYIPQGTPLSYLLAGSPVIVANLWDVTDKDI 2059 (2163)
Q Consensus 2025 ~~~G~fEP~Gt~l~YLlAGcP~VVGNLWDVTDkDI 2059 (2163)
+..|.|||+|++++||+||||+|||||||||||||
T Consensus 349 ~~~g~~~~~g~~~~yl~ag~p~vvg~LWdVTD~dI 383 (383)
T PF03568_consen 349 KEQGEFEPYGTPLSYLLAGCPLVVGNLWDVTDKDI 383 (383)
T ss_pred cccCCCCCCCcHHHHHhcCChheEeecccccCCCC
Confidence 99999999999999999999999999999999998
No 3
>KOG1849 consensus Regulator of spindle pole body duplication [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.7e-78 Score=771.32 Aligned_cols=1287 Identities=21% Similarity=0.221 Sum_probs=878.2
Q ss_pred CcchhhhhhhcccCccCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHhhhccccccccCCCCcccccchHHHHHHH
Q 000110 20 TPIYSLFADYLRPFSDLQNESTKPNPKSKPKAKPNQNLIRPLAKKFLTFLNNSITILPKRLSNLQCKDDHQTLVDELYDT 99 (2163)
Q Consensus 20 t~i~s~f~~yl~Pfs~~~~~~~kp~~~~~~~~~~~~t~ir~LaK~FlpFL~r~lsilp~~l~~~~s~~~~~~~~~elf~~ 99 (2163)
-..++.+.+|..|+..+...+ ....+++++|+.+||++|+++.....+| ++|-++.+..++...+++ |
T Consensus 11 l~~f~~~~~~~~~~~~~~~~~---------~~~~~~~t~~~~~~q~l~~~d~~~~~~~--~~vi~~~~~t~~~~~~~~-~ 78 (1319)
T KOG1849|consen 11 LSLFSKLGDYCSLSQQLRDDG---------GSSKQAQTILAMYKQGLHKLDTLRMDVA--LSVIDSAEETQELQQCIS-T 78 (1319)
T ss_pred hHHHHHhccccchhhhccccc---------hhhHHHHHHHHHHHHhhhhhhhhhhccc--hhhhccHHHHHHHHHHHH-H
Confidence 356788889998877776621 3345689999999999999999999999 678888888788889999 9
Q ss_pred HHHHhhhHHHHhhhhcCCceEEEEeeeeeeeeecccCchHHHHHHHHHHHHhhhhccCC---------CccCCccchhHH
Q 000110 100 YRLCLNCLELISSQLACKPYTIQLQRVRFVCCLVASGKGEDAVREGLRVLETLRRMDFE---------GKCGDSEFGKVF 170 (2163)
Q Consensus 100 y~LcLdcLe~iss~La~kp~~v~~qR~r~v~cl~~~g~~~~a~~e~~~~Le~l~~~~~k---------~~~~d~e~~~lv 170 (2163)
|+.+|||+|-++.|.+||+-.|.+ |.+...|++.+| |.....++|.+++++| .+.| +.++|.|+|..+
T Consensus 79 ~~~~l~v~~~~s~~~~~~~~~~t~-~~~~~~~f~~~~-~~~~~~~~f~i~~~lr-~~~~~~~~~~~p~l~~~~le~cl~~ 155 (1319)
T KOG1849|consen 79 VEQMLDVLEPLSAQSLCKLAGVTS-RYTSSECFQGLS-LQNLYAEAFIIWETLR-SDAKLCALGLRPMLAEIQLELCLFL 155 (1319)
T ss_pred HHHHHHhhhccchhhhhhhhcchh-hhhhhhhhhHHH-HHHHHHHHHHHHHHHH-HhhhhhcccccccccccchhhheEE
Confidence 999999999999999999999999 999999999999 9999999999999999 4422 468999999866
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHhhhhhhhhhHHhhchHHHHHHHHHHHhhhhchhhhhhhccccchhHHHHHHHHH
Q 000110 171 VEAVAAIVQCAAVGRSKDCEVYRRVLGLFQEAKCWFRVLDANAHAKLHRVLVSYLGKCTQHLVEEIMCFNRDLVREFCEA 250 (2163)
Q Consensus 171 ve~~~~l~~c~a~~~~kd~~~y~rvl~l~~e~~pW~r~Ld~~~~~K~h~~Lv~~L~kC~~~Lv~e~~~fd~dlv~~Fc~~ 250 (2163)
.-.+..+.+|+++...-.+ |+....+.+++..|+|++|.-+ +++++-|++....|..-++.+.++|..+.+.+||..
T Consensus 156 f~~~g~~c~aval~l~~~d--~~~~~~~~e~~~~wlr~l~~~~-~~~~k~L~~~~~e~~s~ll~~~~~~~~~~~~sf~~~ 232 (1319)
T KOG1849|consen 156 FMVSGEGCRAVALSLDRLD--LEEIRLLNEELLRWLRVLDQFA-EPIEKKLSTWMPECLSKLLREAERFASAYLKSFKDS 232 (1319)
T ss_pred eeccCCccchhhHHHhhhh--hhhhhhhhHhhhhHHhhhhhhh-hHHHHHHhhccHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6666788888888777666 9999999999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh-hHHHHHHHHhhhhhhccccCCCCcchhHHHHHHhhhhhhcccccccCC-cccchhhhhHHhhhcccccc
Q 000110 251 TLTEYAKSSM-KDQFYKFCRRLCFTLFSLQESKPSLIIEIILCVLDSIACQCKQVESDN-TGIELVELVSYCANKCRTAG 328 (2163)
Q Consensus 251 tl~e~~ks~~-k~q~~k~ar~ics~lf~~~~~~~~~~~dil~~v~~s~a~~~~kve~~n-~~iefveLV~ycA~kC~~a~ 328 (2163)
++.|+-+.-. ++|.++ +++ ...|++||+.||.+.|.+.+
T Consensus 233 ~~~~~~~li~l~~k~~~---------------------------------------dd~~s~~~~~el~~y~~~~Cs~~~ 273 (1319)
T KOG1849|consen 233 RVEEILKLIKLSDKRMK---------------------------------------DDKQSLSELFELAQYLDSLCSTLS 273 (1319)
T ss_pred HHHHHHHhhhccccccc---------------------------------------cchhhhhhhhhHHHHHHHhhcccc
Confidence 9999877654 333322 111 23678999999999555553
Q ss_pred cchhhhHHhhhhhhhccCccccchhHHHHHHhhhccccccchhcc--cCCcccCCcccchhhhhccCCCCcccccchhhH
Q 000110 329 TIFCSTVAGHLNHIGGHFPQVITPVDLILRLYATGLYLTNYEVKF--RGGDLTSTRAAKDEFVLSCLPDDGDQLHNLASL 406 (2163)
Q Consensus 329 ~~~Cs~~~~~ln~~~~~~~~~~~~~~~il~lYaiGl~~~~~~~~~--~~~~~~~~k~a~de~~~~~~~~~~~~l~~~~~~ 406 (2163)
. +| .|+.+. +|++ +..+ ....+.+.++++.+++...+.+|+-.++
T Consensus 274 ~--------------------~p----------~~~~L~--~c~l~~rl~e-i~e~~~~~~~~I~~~l~~~~~~~s~~s~ 320 (1319)
T KOG1849|consen 274 N--------------------VP----------LGLLLD--VCELPDRLSE-IQESAEKSDWKILALLKSFRPLQSDISF 320 (1319)
T ss_pred c--------------------cc----------ccceee--eeecHHHHHH-HHhhhcccchhHHHhccchhhhhhhhhh
Confidence 2 22 444444 4444 2221 1122355669999999999999999999
Q ss_pred HHhhhhhhhhccccccccccccccccccccchhHhhHHHHHHHhhh---hhhhcccccccccCCccCccchhhHHHHHHH
Q 000110 407 LSALGSYFSFCCAKNFVSSKLVSDIEAAYISPQLCSIQDAFYQFFD---VFFSQSLASERKRDGLDDNKRILSVTVAAFI 483 (2163)
Q Consensus 407 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~s~ts~~~~~~~~~~~~lL~v~vaaf~ 483 (2163)
.|..+.+ ...|..+..|. .++....-+|-.-|...+. ++.+.+++++..+.. +-+|||
T Consensus 321 n~~~~~~-~~l~~~q~~~~--------~~~~~~~~~i~~~~~~~~~st~vlvls~~~~D~~e~~----------l~~a~~ 381 (1319)
T KOG1849|consen 321 NGLADII-QSLCLLQETWI--------ERLLSSGRSIARCFELSNESTHVLVLSRQTSDSVERA----------LESAFI 381 (1319)
T ss_pred hhhHhhh-hhhhhhhHHHH--------HHHHhccchHHHHHHHhhhhhHHHHHHHHHhhHHHHH----------HHhhhh
Confidence 8755544 23333333342 2233444556666666665 556678888766663 455699
Q ss_pred HHhhhhHhHHHHHHHHHHHHhcCCCCccchhhHHHhhcceEEEEEechhhHHHhHHHHHhhhhhhhhhhhhhhhhhccCC
Q 000110 484 LSITMDRKLKKTVLLIKHIIANEWIQPEGLKYLYASLYNIGVLLYRNKQVKEASKALKLCCRAAWACVARLSQMFACNCN 563 (2163)
Q Consensus 484 lS~~t~~klq~S~~~I~~ii~s~wi~~~eLk~liasl~nigv~lY~nk~~~~A~k~lkLcc~a~W~~v~~~~~~~~~~~~ 563 (2163)
-..+|--.+-++.++++++.. |+.+..+||+.++| +
T Consensus 382 ~vlrt~~~l~~~~s~~E~~~~----------------~~~~lnllr~~~~k------------------l---------- 417 (1319)
T KOG1849|consen 382 HVLRTTSTLAYFSSILEDKGN----------------YEELLNLLRSFCLK------------------L---------- 417 (1319)
T ss_pred hhhhhhhHHHHHHHHHHHhcc----------------hHHHHHHHhhhHHH------------------H----------
Confidence 999999999999999999987 77777888888876 1
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHhHHHhhhhhccCCCchhHHHHhheeeeeeccC
Q 000110 564 SDGFHGGMTEGAIVDFVNEACTRSAFLLDVLHHRGSQKMEKVIVDSLENWSIAAILFKTLPGPLPLVKQWVKIECKRRKN 643 (2163)
Q Consensus 564 s~~~~~~ls~~~i~dfv~eAc~r~a~llDiL~~~g~~~~~k~iv~~LenW~~a~~~~~~Lp~p~~lvKqWVKi~~k~~~~ 643 (2163)
++|..+.+ |++ |-++-.-++.......|.+|..+.+.+ ++..+|+||+
T Consensus 418 -------l~e~~~~~-------~~s-----l~k~~~~~g~q~~~~~l~~~~~~~h~~-----it~~~k~~vl-------- 465 (1319)
T KOG1849|consen 418 -------LSEFISID-------KCS-----LPKELCFQGRQSDEHTLQDQISLLHSI-----ITSVTKFSVL-------- 465 (1319)
T ss_pred -------HHHHHHhc-------ccc-----cHHHHHHhhccCcceeccchhhhhhhh-----hhhHHHhhhH--------
Confidence 11122222 222 111111112222233344444433333 2223333321
Q ss_pred cCcCCCcchhhhhhccCccCcchhhhhHHHHhhhhhhhhccCChHHHHHHHHHHHHHHhhhhccCCCcchhhhhHhhhcc
Q 000110 644 LDVEDDAPTLYYLLSSSGKASERTIGIILEQELHSYEELYPLSPELCHRMQMKISTILLQSVYNSRNSYFQRSGILLRKG 723 (2163)
Q Consensus 644 ~d~~~d~~~Ly~ll~ss~~~~~r~iG~ileqel~ay~~~~~~~~~~cq~mq~~i~~iLl~~vY~~~~~~~ersriL~~Kg 723 (2163)
+=+|.+
T Consensus 466 -------------------------------------------------------~~~l~~------------------- 471 (1319)
T KOG1849|consen 466 -------------------------------------------------------DDILLH------------------- 471 (1319)
T ss_pred -------------------------------------------------------HHHHhh-------------------
Confidence 111111
Q ss_pred chhhhcCcCCchhhHhhhHHHHHHhhcccCCCCCCcccchhhhHHHHHHhhhhccccCCchHHHHHHHHHHHHhhHhcc-
Q 000110 724 RALRARGTEGLKDCIQCLSEAICVMNDISGDMSQHETLHCHQLAVAYCLRALCTQEAEPNSKQVIEDIGAALNLWLSVS- 802 (2163)
Q Consensus 724 r~~R~~G~~~l~~ci~~lseai~~l~~~~~~~~~~~~~~~~~lavayclra~C~qEae~~s~~~~~d~~~al~lw~~i~- 802 (2163)
+....+.+..|-.-++||++..|+ ||+++.+-.+.|++..
T Consensus 472 ------------------------------~~nll~s~s~hs~~lS~~lk~vC~---------i~~~~ss~~ne~~~~~~ 512 (1319)
T KOG1849|consen 472 ------------------------------GENLLSSISFHSEVLSICLKLVCT---------IFSELSSFENEYLKLLM 512 (1319)
T ss_pred ------------------------------chhhccccccchhhhhhhheeeee---------ecccchhhHHHHHHHHH
Confidence 111222223455667889999999 9999999999999977
Q ss_pred ccCcccccccccchHHHHHHHHHHHhhccchhhHHhHHHHHHHHhhcccCCChhhHHHHHhhcccccccccccccchHHH
Q 000110 803 ICFESERCNMVSENTMLLLYNVVDLLSLKGFIEFHNNIYKLMLRLFKCKNVPLEKYLSILWESRRLSHALCISPVNDAFL 882 (2163)
Q Consensus 803 ~~~~g~~~~~~~~~~~~ll~n~vDLl~lKg~~e~~~~~~kl~i~l~~~k~~~~ek~ls~lWe~rrlsH~lC~sP~~~~fi 882 (2163)
+.+.+. +++-+++.++.++++|+.-+||...+|++.++.+.+ |.|+ ||
T Consensus 513 lL~~~~--sl~~~~~~~le~~~~~~~l~k~~~~~~~h~~qsv~~---------------------------p~~~---fI 560 (1319)
T KOG1849|consen 513 LLKIFR--SLALAVILRLEFARIVIDLVKGDSQLHLHWLQSVTE---------------------------PPPI---FI 560 (1319)
T ss_pred Hhhhhh--hhHHHHhhHHHHhhhhHHHHhhhHHHHHHHHhhccc---------------------------Cchh---hh
Confidence 665555 356678888999999999999999999999999987 6777 99
Q ss_pred HHhHHHhccccchhhhhhhhccCCcccchhhhhhhhhhhccCCCCccccCCCCcccccHHhHHHHHHHhhccCCCCCCce
Q 000110 883 VNLAEQCGELSKSIEFWMGCLQGSQPLLVGFQQSLLFLFANSSHGCYISKSSVQPCITIHDVKEAASELISSVPVTPRSV 962 (2163)
Q Consensus 883 ~~~~~~~g~~~~~~~fw~~~~~~~~~~~v~~q~~~~~l~~~~~~~~~~~~~~f~~~~~~~~v~~aA~~lis~~p~~~~s~ 962 (2163)
..+.+.|+ +-+++||+.+.++|.+.++ |++.-+|.+ ....+.+.++++++++..+---.++-
T Consensus 561 q~fs~~~~--~~c~~~~i~~~k~s~~~~~---e~~~~~~~~-------------s~~i~~~L~~~~~~~~L~~~~lg~s~ 622 (1319)
T KOG1849|consen 561 QGFSEVFV--LMCVLRWIAKHKDSKELLL---EPTGNLHSN-------------SLNIVPDLLEVTLSLYLVVFQLGLSN 622 (1319)
T ss_pred hhHHHHhh--HhhcchhhhhccchHHHhc---ccchhhccC-------------cccchhHHHHhhcchhhHHHHHhHHh
Confidence 99999999 7789999999999999999 666655443 34458999999999999999999999
Q ss_pred eeehhHHHHhHHHHHhcchHHHHHHHHH-HHHHHHHHHhhhhhceeeccccccccccccccccccCCCCcccccccccee
Q 000110 963 FLVGYLYYDLCERLIANGRLLEALSYAI-EAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASE 1041 (2163)
Q Consensus 963 f~a~~LyydL~erl~~~G~l~~A~syak-Ea~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~ 1041 (2163)
+...+|||++|+..++.+++-+|+.||. ++.|.+..++|+|+.|++++..+.+|+. -.++-+..-..++++++-.++.
T Consensus 623 ~~~~~l~~s~~~~~ir~~r~s~~~~~a~~~~~r~v~~I~qrk~l~~~e~lf~~~n~~-~~~~~~~~l~~~~q~~~a~l~l 701 (1319)
T KOG1849|consen 623 QGPAELNYSLEESMIRQPRLSEAFNYALSSGLRAVSPILQRKKLYAVEELFQPDNES-RGSKLRLALYGNIQYYRASLYL 701 (1319)
T ss_pred hHHHhhchhhhhhHHHHHhhHHHHHHHhccccHHHHHHHHhhhhhhHHHhhCCCcch-hHHHHHHHHHhhhhHhhhhhhh
Confidence 9999999999999999999999999999 9999999999999999999888888877 5566666778899999999999
Q ss_pred eccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhh
Q 000110 1042 VWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQ 1121 (2163)
Q Consensus 1042 ~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~ 1121 (2163)
.|+.....|.+.+|+.+||-++++|+|+|.=||.- +++.++--+-.-|-.+-. -.+.|+++==..|.++.
T Consensus 702 ~w~~~~~~~~v~~c~~~~~~~~~~w~e~~~~~gs~----~~~~s~~g~~~~Gli~~~------~~~~~~~c~q~t~~~~l 771 (1319)
T KOG1849|consen 702 NWRCTNLGYIVGNCSTSSWLALSGWKESTNNVGSR----NAVQSRLGKKFNGLIKGK------GVILFTSCSQNTPDPML 771 (1319)
T ss_pred hhhhhhhHHHhhccccchHHHHHHhhhhcccccch----hhHHHHhhHhhccccccc------ceecccccccccCChhH
Confidence 99999999999999999999999999999822221 123333222222222211 11222332127788999
Q ss_pred chHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHH-HHHHHHHhccCccc
Q 000110 1122 LWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAE-KLYKSALDKLNLSE 1200 (2163)
Q Consensus 1122 ~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~-~~Y~sAldKln~s~ 1200 (2163)
+-++|+.|.+.+.++..+...+.+|-+|...+++.-..+.++-..-. .+. .+.+.+.-+|+ ..|+-.+.+-....
T Consensus 772 ~~~la~~~~~~i~~v~l~~~~~~~~~~~~~~~qai~v~~~~~~ld~~---d~~-~~~t~~~~~~e~~~~~~~~~~~~~~~ 847 (1319)
T KOG1849|consen 772 CSILARAEDKTIFEVKLHALRDPIIMKLAHYLQAIEVCRKFTALDDA---DEE-LPKTAEAMLAEEPKSRGKLNRGRGRA 847 (1319)
T ss_pred HHHHhccccceeeeeeeccccCcchhhhhhhhhhHHHhhccchhhhh---hhh-cccchHHHhhhhhHhhhhhhCccccc
Confidence 99999999999999999999999999999999999888888877666 455 55565555555 45558889888888
Q ss_pred cccc-CCCcccccccccccCCCcccccccCCCcccccccCCCCchhhhhhhccCCCccCccccccccchhhhcccccccc
Q 000110 1201 WKNS-ISLPEEARSESILPKKPSIQNVEHGAGNTFVHSTLHQPDTVELTARNQLSAKVGGTKCRKTKNALKSLVNDQNLD 1279 (2163)
Q Consensus 1201 ~k~~-~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~tk~s~~~l~keQ~~~ 1279 (2163)
|+.+ ..+.+.+.....+ .+|+ + ++.. ..+..++..+....+.|.-|...... |...
T Consensus 848 ~~d~~~K~~l~~~~~l~~-----------~~g~-l----g~n~-~s~~aik~~~~~~~~~~~g~ae~~~~------~~~~ 904 (1319)
T KOG1849|consen 848 FKDLIQKHFLGVAASLVL-----------PSGE-L----GLNG-ASKLAIKMALRSCGELKPGRAEDQKR------QSKI 904 (1319)
T ss_pred chhhHHhhcccccceeec-----------CCCC-c----Cccc-ccHHHHHhhhcchhhhcccchhHHHh------hhhh
Confidence 8866 4444544433311 1233 2 2221 34444555555554444444433333 8999
Q ss_pred cCCCcccccccccccccccccccccccccccccccCCCCCCCccccccCcccc-ccccccccCccceeeecccccccccc
Q 000110 1280 LDPNSRITRSKYRSSQNQSVNNCVEERSGVSKHAKNNNLSDLPDILSQGKSVL-EAKSFVDTGYQAACICNKMKCWQCLP 1358 (2163)
Q Consensus 1280 ~~~~~R~TRS~~r~~~~k~~~~~~~~~~~~~k~~~n~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~c~cn~~~cw~Cl~ 1358 (2163)
.+|++|+|+. .| -.+.++..+.+..++.+ ..++.+.+..+|..++ ++...- ...|+|+.++=..|+
T Consensus 905 ~~~~s~lt~v-~r----~~~~vr~~d~~~~s~~l---~~~p~s~~s~ge~~~i~~~s~~~----~~~~~c~~~~~~~~~- 971 (1319)
T KOG1849|consen 905 LIPKSRLTLV-LR----SFCEVRGTDSKSKSGKL---LLLPRSVESLGEDELIRQDSKRK----TYLSICPDLKRQLCL- 971 (1319)
T ss_pred cCchhhhhhh-hh----hHHHHhCCccccccCcc---ccCCcchhcccccccccccccch----hhccCCcHHHhhhhH-
Confidence 9999999988 33 22333444444223322 3455555555554444 222111 156888888744444
Q ss_pred ccccccccchhhhhhHHHhHhhhhhHHHHhhccccccccCCcchhhhhhhhccccccccCCccccCCCCchhHHHHhhhc
Q 000110 1359 GEVIESGLLDNLLHVKWEFTRRRLSLRVLAGIGKCFGNRDQTHEAHKIVFQSVSVLLCRNSFSHTDSSLPVTVLLDLIGK 1438 (2163)
Q Consensus 1359 ~~v~~Sg~l~N~i~~Kw~~v~r~l~~~il~~~gkc~~~~~~~~~a~~~~~~s~~~~~~~n~~~~~~~~~~~~~l~~l~~~ 1438 (2163)
|-|+ .|+.+|- ++.
T Consensus 972 ------~RL~--------------------------------------~~s~~~~----------------------v~~ 985 (1319)
T KOG1849|consen 972 ------ERLD--------------------------------------ILSELPS----------------------VGR 985 (1319)
T ss_pred ------Hhcc--------------------------------------cccccch----------------------HHH
Confidence 1111 1111100 000
Q ss_pred cccCcccchhhhHHHHhhhhhhhhhhhccccccccccCCccchhhHHHHHhcCCCccccCCCchhhHHHHHHHHHHHhHh
Q 000110 1439 EYSEDVFAVERAGVLYNLCWFSLKAYLIIDVMKIGFLPNFSGFLSLLILSFSPFSFAYYPAPRMMNLLAVSKLLAVIYVL 1518 (2163)
Q Consensus 1439 ~~~~d~~~~e~a~il~~~~~~~lk~~~~~~~r~i~~~~~~~~~~~wl~~af~ls~~~~~e~P~l~~~~kv~rLLa~i~~~ 1518 (2163)
.-+||+.
T Consensus 986 ----------------------~~s~h~~--------------------------------------------------- 992 (1319)
T KOG1849|consen 986 ----------------------HISIHSA--------------------------------------------------- 992 (1319)
T ss_pred ----------------------HHHHHHH---------------------------------------------------
Confidence 0001100
Q ss_pred cccccccccccCcccccchhhhhHHHhhccccchhhhhhhhcccccccccccccccccccCCcccccccccccccCCCCh
Q 000110 1519 SSTSKLFSLSSSSKVLSESHWASFFHQASLGTHLNYKFLSNMSWRFKAQDIVDTEASHVTGSSCIKTETGKLIRISPESI 1598 (2163)
Q Consensus 1519 s~~s~~~~~~~~~~~ls~~~waAyfhq~SlGt~lr~q~ls~l~~k~k~~~l~~~e~~~~~~s~c~~~el~~~~r~sp~~~ 1598 (2163)
+| + .+++-.+++ +++---.++.-..+.+ +. =.+.++
T Consensus 993 --~~-~--------------ltd~~~~~~-----~ip~~i~~~~~~~i~~---------------------~~-n~~~~~ 1028 (1319)
T KOG1849|consen 993 --SS-Q--------------LTDMLSTEA-----QIPLNIDLHNSFYILD---------------------PS-NNLGSA 1028 (1319)
T ss_pred --HH-H--------------hhhhhhchh-----hchhhcCCccceeecC---------------------cc-ccccch
Confidence 00 0 000111111 0000000000000000 00 011222
Q ss_pred hhHHHHHHHHHccCCCccEEEEEeeccchhhhhhhccCCCccccceEEEEeecCCCCCEEEEecCCCccccCCCCCCccc
Q 000110 1599 KDLEQFVKDFLLSLPCTTVICVTLLGGAYTRLLQELLPLPSCVHAWMMLSRFNSINQPIVVLLPVNAVLQEDADYDDDDA 1678 (2163)
Q Consensus 1599 ~d~~~F~kdyid~LP~~tVIsISL~~~~~~~ll~el~~~P~~~~awLlISRl~~g~~P~vlRLPL~R~~srd~Dee~~sf 1678 (2163)
++..-+.-..++ |++++.+. .++ |-+.|+|+.| |
T Consensus 1029 ~~~~l~~~n~~~----w~~~~~~~-----------------------------~~s-~~~t~l~s~r------~------ 1062 (1319)
T KOG1849|consen 1029 PLRRLQELNKFR----WEGPSGSI-----------------------------PKS-TEITRLLSQR------D------ 1062 (1319)
T ss_pred HHHHHHHhhcce----eeecccCC-----------------------------CCc-hHHHhhhhhh------H------
Confidence 322222222222 33332222 111 4555666655 1
Q ss_pred chhhhhhhhhhcCCCCCCCCCCcchHhhHHHHHHHHHHhhhhcccCCCCCChhhHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 000110 1679 ITSFRELREIKDCGKNWHCPWGSTIADDVAPAFKLIMEDNYLSSRSSYGDSLGQRSLWWNRRTKLDQRLCEFLRKLEDSW 1758 (2163)
Q Consensus 1679 ~~g~~e~~ei~~~~k~w~cpwGytvvDdVa~eF~~IIeEN~~Stss~~~~TkedRk~WWk~R~aLD~RLk~LL~nIE~~W 1758 (2163)
+|.+|+ +.++++.. ++.. ++|..|| |+.||.|+|.+|
T Consensus 1063 -------------------------------~l~si~---~~s~s~~~----~~s~---~~r~~ld--~~~lL~n~E~sw 1099 (1319)
T KOG1849|consen 1063 -------------------------------ALFSII---HQSGSSVK----ENSI---TKRLTLD--MQQLLMNIESSW 1099 (1319)
T ss_pred -------------------------------HHHHHH---hhcccccc----ccch---hhhhcCC--HHHHHhhcchhe
Confidence 356788 33333322 2222 9999999 999999999999
Q ss_pred hhcccccccCccCCcchHHHHHHHHHHhhhhccCcccChhHHHHHHCCCCCCCchHHHHHHHhhccCccccccccccCcc
Q 000110 1759 LGPWKYMLLGEWSNCKNLDTVHKKLVRDLKCKCKANINESLLRIVLGGLKGAFKGEECIAQLCFKKGCYVGTVGYSDNSS 1838 (2163)
Q Consensus 1759 LGgfKGLLlg~~sd~~~le~~~k~Lv~~L~Sk~k~~ld~~LLkliLg~~~~~~d~ee~L~dLl~~~~~y~~r~~YdeiD~ 1838 (2163)
||||||+|+|+..++.. .+.++..-++......+.++.......++.+.++. |+ ..
T Consensus 1100 lg~~~g~f~p~~~~~~l-----------~~~~~p~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~------~l-- 1155 (1319)
T KOG1849|consen 1100 LGPWKGLFLPESVDPSL-----------AKAKCPLLVGCLWDVVIRLGLKGYLSGEDSLEDLI-----YF------AL-- 1155 (1319)
T ss_pred ecccccccCccccccch-----------hhcCCChhhhhHHHHHHhhcccceeehhhhcccch-----hh------hh--
Confidence 99999999999999875 12233333332222222222111122222222221 11 11
Q ss_pred cCCcccccccccchHHHHHHHHHHHHhhhccCCCCCCcEEEEeCcccccccccccCCCCCccccccCChHHH-HHHHHHH
Q 000110 1839 CGTSSEASNGVERLSELALQLIHKAVDELEDDSGHREPTILVLDCEVQMLPWENIPILRNHEVYRMPSVGSI-AATLERI 1917 (2163)
Q Consensus 1839 l~~~se~~d~i~v~~~~al~lih~A~~el~~~~~~r~hvILVLDk~L~~fPWESLP~Lr~~sVSRmPSL~~L-~~~L~r~ 1917 (2163)
+|....+.+.++++..... ......+.|||||+|+.+|.||||+||+| .++|||||+-..+ ...+.+.
T Consensus 1156 ---------~i~~~~~ls~~l~~~~~~~-~~t~~n~sh~vLvld~~v~~~pwe~lp~l-~~sv~r~P~s~~~~~~s~s~~ 1224 (1319)
T KOG1849|consen 1156 ---------DIIDQRELSQELLEAYRKQ-RLTEENRSHTVLVLDKSVHKFPWESLPSL-KLSVTRVPSSTVLLKESLSKE 1224 (1319)
T ss_pred ---------cCCchHHHHHHHHHHHhhc-ccccCCccceEEEEChhhhhCCcccchhh-hcccccCcHHHHHHHHhcccc
Confidence 2221233555555533332 24456889999999999999999999999 9999999922222 2222211
Q ss_pred hhhhhhhccccCCcccccCCCcEEEECCCCChHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHHhcCCeEEEeeccccc
Q 000110 1918 HRHEQLVKGLLATFPLIDPLDAFYLLNPSGDLSETQLLFEDWFRDQNLVGKAGSAPTAEELTLALKSHDLFIYLGHGSGS 1997 (2163)
Q Consensus 1918 ~~~~~~~~~~~~~~~~VD~~~~~YILNPsGDL~~TQ~rF~~~f~~~~W~GivGr~PseeE~~~aL~~~DLFLYfGHGsGe 1997 (2163)
+.+...... . |.+++||||| ||.+|+.+|.+.+|.|++|+.|+++|++++|+++|+|+|+|||+|+
T Consensus 1225 -----~~q~~v~s~--~-~~~~~yilNp------te~~f~~~f~~~~~~g~~~~~P~~~q~~e~l~~~dlf~y~ghg~g~ 1290 (1319)
T KOG1849|consen 1225 -----PKQSPVASQ--G-PRSTSYILNP------TEEPFEANFSSRAWVGKAGEQPSAEQLEEMLENHDLFLYFGHGGGE 1290 (1319)
T ss_pred -----cccCceeec--C-CCCcceecCC------chhhhhhhhhhhcceeccCCCCChHHHHHHhhcCCeEEEeccCCCC
Confidence 111111111 1 8899999999 9999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccccccccEEEecCCccccccCCC
Q 000110 1998 QYISRHDLLKLEKCAATFLMGCSSGSLSLNGC 2029 (2163)
Q Consensus 1998 QYI~~~~I~rL~~CAasLLmGCSSg~L~~~G~ 2029 (2163)
|| ..+.++.+||+.+|||||||+|...|.
T Consensus 1291 ~~---~~~~tl~~~a~~~l~gcssaal~~~g~ 1319 (1319)
T KOG1849|consen 1291 QP---KEVATLKCRAVRLLFGCSSAALAVHGS 1319 (1319)
T ss_pred Cc---hhhcccccccchHhhcCCHHHHHHhcC
Confidence 99 889999999999999999999988773
No 4
>PF12770 CHAT: CHAT domain
Probab=99.34 E-value=1.7e-11 Score=139.75 Aligned_cols=185 Identities=25% Similarity=0.356 Sum_probs=138.0
Q ss_pred CCCcEEEEeCcccccccccccCCC------CCccccccCChHHHHHHHHHHhhhhhhhccccCCcccccCCCcEEEECCC
Q 000110 1873 HREPTILVLDCEVQMLPWENIPIL------RNHEVYRMPSVGSIAATLERIHRHEQLVKGLLATFPLIDPLDAFYLLNPS 1946 (2163)
Q Consensus 1873 ~r~hvILVLDk~L~~fPWESLP~L------r~~sVSRmPSL~~L~~~L~r~~~~~~~~~~~~~~~~~VD~~~~~YILNPs 1946 (2163)
...++++++|..|+.+|||.|+.= ....|+.+||...+...-.+.. .. .+.....+-+|.
T Consensus 23 ~~~~l~i~~~~~l~~lPwe~L~~~~~~~L~~~~~i~~~~s~~~~~~~~~~~~---~~-----------~~~~~l~i~~p~ 88 (287)
T PF12770_consen 23 GKRRLIIVPDGELHALPWEALPDPDGRFLAERYAISYAPSLQQLLPLRSRPP---SP-----------PRRLRLVIGNPD 88 (287)
T ss_pred CCCEEEEECCChHhhCcHHHcCCCCCCcccccceEEEEccHHHHHhhhhccc---cc-----------cccceEEEecCC
Confidence 334999999999999999999432 2358888999885432111110 00 000115566665
Q ss_pred -----------CChHHHHHHHH---HHHhcCCcccccCCCCCHHHHHHHH--hcCCeEEEeeccccc-------------
Q 000110 1947 -----------GDLSETQLLFE---DWFRDQNLVGKAGSAPTAEELTLAL--KSHDLFIYLGHGSGS------------- 1997 (2163)
Q Consensus 1947 -----------GDL~~TQ~rF~---~~f~~~~W~GivGr~PseeE~~~aL--~~~DLFLYfGHGsGe------------- 1997 (2163)
.+|..++.... +.+...+..-.++..++.+++.+.| ...|++-|.|||...
T Consensus 89 ~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~~~~~~~~~~~at~~~l~~~l~~~~~~ilH~a~Hg~~~~~~~~~~~l~l~~ 168 (287)
T PF12770_consen 89 FGGSLIRGAALSPLPGAQREADALAELLGAGGLRVLVGPEATKDALLEALERRGPDILHFAGHGTFDPDPPDQSGLVLSD 168 (287)
T ss_pred CcccccccccccCchHHHHHHHHHHHHhcccceeEeeccCCCHHHHHhhhccCCCCEEEEEcccccCCCCCCCCEEEEec
Confidence 56788877733 3343444566789999999999999 889999999999877
Q ss_pred ------cccchhhhccc--cccccEEEecCCccccccCCCCCCCchHHHHHhcCCceeeeecccCChhhHHHHHHHHHHH
Q 000110 1998 ------QYISRHDLLKL--EKCAATFLMGCSSGSLSLNGCYIPQGTPLSYLLAGSPVIVANLWDVTDKDIDRFGKTMLDA 2069 (2163)
Q Consensus 1998 ------QYI~~~~I~rL--~~CAasLLmGCSSg~L~~~G~fEP~Gt~l~YLlAGcP~VVGNLWDVTDkDIDRFt~~LLe~ 2069 (2163)
..++.++|..+ .....++|-+|.||.-...+.-+..|.+-.++.+|+|+|||++|.|.|..-.+|+..+.+.
T Consensus 169 ~~~~~~~~l~~~~l~~l~l~~~~lVvLsaC~s~~~~~~~~~~~~~l~~~~l~aG~~~Vi~~~w~V~d~~a~~f~~~fY~~ 248 (287)
T PF12770_consen 169 ESGQEDGLLSAEELAQLDLRGPRLVVLSACESASGDPSDGDEVLGLARAFLQAGAPAVIGMLWPVPDQAAARFMRRFYRA 248 (287)
T ss_pred cCCCCCcccCHHHHHhhcCCCCCEEEecCcCCcCCCCCCchHHHHHHHHHHHcCCCEEEecccCcchHHHHHHHHHHHHh
Confidence 45666666653 3478899999999955444444667999999999999999999999999999999999998
Q ss_pred Hh
Q 000110 2070 WL 2071 (2163)
Q Consensus 2070 W~ 2071 (2163)
|.
T Consensus 249 L~ 250 (287)
T PF12770_consen 249 LL 250 (287)
T ss_pred hh
Confidence 84
No 5
>KOG1849 consensus Regulator of spindle pole body duplication [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=1.2e-11 Score=162.76 Aligned_cols=234 Identities=23% Similarity=0.204 Sum_probs=181.7
Q ss_pred cEEEEeCcccc-cccccccCCCCC-ccccccCChHHHHHHHHHHhhhhhhhccccCCcccccCCCcEEEECCCCChHHHH
Q 000110 1876 PTILVLDCEVQ-MLPWENIPILRN-HEVYRMPSVGSIAATLERIHRHEQLVKGLLATFPLIDPLDAFYLLNPSGDLSETQ 1953 (2163)
Q Consensus 1876 hvILVLDk~L~-~fPWESLP~Lr~-~sVSRmPSL~~L~~~L~r~~~~~~~~~~~~~~~~~VD~~~~~YILNPsGDL~~TQ 1953 (2163)
-+.++..+.+- .+.||.||.+.+ .+|.|.-|+|.-..++.....++.+++ -.+|-.+.+||++|++.+.+|.
T Consensus 956 ~~~~~~c~~~~~~~~~~RL~~~s~~~~v~~~~s~h~~~~~ltd~~~~~~~ip------~~i~~~~~~~i~~~~n~~~~~~ 1029 (1319)
T KOG1849|consen 956 KTYLSICPDLKRQLCLERLDILSELPSVGRHISIHSASSQLTDMLSTEAQIP------LNIDLHNSFYILDPSNNLGSAP 1029 (1319)
T ss_pred hhhccCCcHHHhhhhHHhcccccccchHHHHHHHHHHHHHhhhhhhchhhch------hhcCCccceeecCccccccchH
Confidence 34555555555 899999998888 489999999966555555443333211 1367779999999999999999
Q ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHHhcCCeEEEeeccccccccchhhhccccccccEEEecCCccccc-cCCCCCC
Q 000110 1954 LLFEDWFRDQNLVGKAGSAPTAEELTLALKSHDLFIYLGHGSGSQYISRHDLLKLEKCAATFLMGCSSGSLS-LNGCYIP 2032 (2163)
Q Consensus 1954 ~rF~~~f~~~~W~GivGr~PseeE~~~aL~~~DLFLYfGHGsGeQYI~~~~I~rL~~CAasLLmGCSSg~L~-~~G~fEP 2032 (2163)
.+.-..+....|+|..|..|..-|...++...|-|+++|||+|.--....-.+|..--.-.|||||-+..+- ..|.|.|
T Consensus 1030 ~~~l~~~n~~~w~~~~~~~~~s~~~t~l~s~r~~l~si~~~s~s~~~~~s~~~r~~ld~~~lL~n~E~swlg~~~g~f~p 1109 (1319)
T KOG1849|consen 1030 LRRLQELNKFRWEGPSGSIPKSTEITRLLSQRDALFSIIHQSGSSVKENSITKRLTLDMQQLLMNIESSWLGPWKGLFLP 1109 (1319)
T ss_pred HHHHHHhhcceeeecccCCCCchHHHhhhhhhHHHHHHHhhccccccccchhhhhcCCHHHHHhhcchheecccccccCc
Confidence 998877777779999999999999999999999999999999988777666666544478899999988875 5799999
Q ss_pred CchHHHHHhcCCceeeeecccCChhhHHHHHHHHHHHHhhccCCCCCCCCCCCcchhhhhcCCCcccccccccCCCCCcc
Q 000110 2033 QGTPLSYLLAGSPVIVANLWDVTDKDIDRFGKTMLDAWLRERSSVPVGCDQCSSVQDEAKNGRGKVNKKRMSRKKLPETS 2112 (2163)
Q Consensus 2033 ~Gt~l~YLlAGcP~VVGNLWDVTDkDIDRFt~~LLe~W~~~~s~~~~~~~~c~~l~~e~~~gkG~~~k~~~~~k~~~~~~ 2112 (2163)
.-....|.+++||++||++|||+|+-++++-....+... -++.. ..+
T Consensus 1110 ~~~~~~l~~~~~p~l~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~-~l~------------------ 1156 (1319)
T KOG1849|consen 1110 ESVDPSLAKAKCPLLVGCLWDVVIRLGLKGYLSGEDSLE--------------DLIYF-ALD------------------ 1156 (1319)
T ss_pred cccccchhhcCCChhhhhHHHHHHhhcccceeehhhhcc--------------cchhh-hhc------------------
Confidence 999999999999999999999999999999554443321 01000 000
Q ss_pred cccccCCCCCCCCCHHHHHHHHhhcCCccCccccccEEecccee
Q 000110 2113 DISLCNNGCDHRPKLGSFMGQAREACKLPFLIGAAPVCYGVPTG 2156 (2163)
Q Consensus 2113 d~s~~~~~c~~~~sL~eAVa~AR~aCkLkYLnGAApVVYGIPv~ 2156 (2163)
. ...+-|+..+-.|+..=++.+.|++..|.|+-|.+
T Consensus 1157 -i-------~~~~~ls~~l~~~~~~~~~t~~n~sh~vLvld~~v 1192 (1319)
T KOG1849|consen 1157 -I-------IDQRELSQELLEAYRKQRLTEENRSHTVLVLDKSV 1192 (1319)
T ss_pred -C-------CchHHHHHHHHHHHhhcccccCCccceEEEEChhh
Confidence 0 11234778888899999999999999999998754
No 6
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=84.42 E-value=2.8 Score=51.88 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=59.9
Q ss_pred CCHHHHHHHHhc-CCeEEEeeccccccc----cchhhhccccc---cccEEEecCCccccccCCCCCCCchHHHHH---h
Q 000110 1973 PTAEELTLALKS-HDLFIYLGHGSGSQY----ISRHDLLKLEK---CAATFLMGCSSGSLSLNGCYIPQGTPLSYL---L 2041 (2163)
Q Consensus 1973 PseeE~~~aL~~-~DLFLYfGHGsGeQY----I~~~~I~rL~~---CAasLLmGCSSg~L~~~G~fEP~Gt~l~YL---l 2041 (2163)
++.+.+.++|.+ ..+..|+|||++... |....+..+.+ .++++-++|..|+....+.. ...-.++ -
T Consensus 226 ~~~~~i~~~ln~G~~~v~y~GHG~~~~w~~~~~~~~d~~~l~N~~~~p~~~s~~C~~g~fd~~~~~---sl~E~~v~~~~ 302 (378)
T PF01364_consen 226 GTRDNIINALNQGAGFVNYFGHGSPTSWADEDFTSSDISNLNNKNKLPVVISAACYTGNFDDPDNP---SLGEALVLNPN 302 (378)
T ss_dssp --HHHHHHHHHH--SEEEEES-B-SSBBTTT--BTTTGGG---TT---EEEEESSSTT-TTSSS------HHHHHHTTEE
T ss_pred chHHHHHHHHhCCCeEEEEecCCchhhcccCcccHhHHHHhcCCCCceEEEEeECCCcCCCCCCCC---cHHHHheECCC
Confidence 567888888875 667779999998864 56777777754 58899999999986543322 4455555 6
Q ss_pred cCCceeeeecccCChhhHHHHHHHHHHHHh
Q 000110 2042 AGSPVIVANLWDVTDKDIDRFGKTMLDAWL 2071 (2163)
Q Consensus 2042 AGcP~VVGNLWDVTDkDIDRFt~~LLe~W~ 2071 (2163)
+|+-+++|+=.-+...-.++|...+++..+
T Consensus 303 gGAia~ig~s~~~~~~~~~~~~~~~~~~l~ 332 (378)
T PF01364_consen 303 GGAIAFIGSSRVSYASPNDRLNRGFYEALF 332 (378)
T ss_dssp -S-SEEEEESS--SSHHHHHHHHHHTT-ST
T ss_pred CcEEEEEecceeEecchHHHHHHHHHHHHh
Confidence 899999999987777778899888887653
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=81.84 E-value=17 Score=44.04 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=35.7
Q ss_pred HhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHH
Q 000110 942 HDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRL 995 (2163)
Q Consensus 942 ~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~L 995 (2163)
++-.+....++...|.+.+. ..+.+|+.|+.-+...|++.+|..+..++.++
T Consensus 158 ~~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 158 QKAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred HHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 34444455555555554432 23445778999999999999999999998653
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=75.34 E-value=20 Score=50.79 Aligned_cols=152 Identities=12% Similarity=0.010 Sum_probs=104.4
Q ss_pred HHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccc
Q 000110 946 EAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKL 1025 (2163)
Q Consensus 946 ~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~ 1025 (2163)
+.|.+++..-|.+. ..++.|++.+...|+..+|+.+-+++++
T Consensus 590 ~eA~~~l~~~p~~~-------~~~~~La~~~~~~g~~~~A~~~y~~al~------------------------------- 631 (1157)
T PRK11447 590 AEAEALLRQQPPST-------RIDLTLADWAQQRGDYAAARAAYQRVLT------------------------------- 631 (1157)
T ss_pred HHHHHHHHhCCCCc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------
Confidence 45666777666544 3568899999999999999999888887
Q ss_pred cCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcch
Q 000110 1026 HSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQF 1105 (2163)
Q Consensus 1026 ~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f 1105 (2163)
..|. ..+..+..|.++...|+-+||+..+. +.+.....-|.
T Consensus 632 ----------------~~P~--------------------~~~a~~~la~~~~~~g~~~eA~~~l~--~ll~~~p~~~~- 672 (1157)
T PRK11447 632 ----------------REPG--------------------NADARLGLIEVDIAQGDLAAARAQLA--KLPATANDSLN- 672 (1157)
T ss_pred ----------------hCCC--------------------CHHHHHHHHHHHHHCCCHHHHHHHHH--HHhccCCCChH-
Confidence 1111 12455677889999999999999998 33332222222
Q ss_pred hhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhH
Q 000110 1106 IVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNA 1185 (2163)
Q Consensus 1106 ~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A 1185 (2163)
.--.+|.+|.+.+.++.|...++.|.+...+.... .-.+.+...+|++.+.. ++...|
T Consensus 673 ---~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~--------~~~a~~~~~~a~~~~~~-----------G~~~~A 730 (1157)
T PRK11447 673 ---TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPS--------MESALVLRDAARFEAQT-----------GQPQQA 730 (1157)
T ss_pred ---HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcc--------hhhHHHHHHHHHHHHHc-----------CCHHHH
Confidence 22358999999999999999888776654332211 12334445567777655 345579
Q ss_pred HHHHHHHHhcc
Q 000110 1186 EKLYKSALDKL 1196 (2163)
Q Consensus 1186 ~~~Y~sAldKl 1196 (2163)
+..|+.||...
T Consensus 731 ~~~y~~Al~~~ 741 (1157)
T PRK11447 731 LETYKDAMVAS 741 (1157)
T ss_pred HHHHHHHHhhc
Confidence 99999998543
No 9
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=71.08 E-value=32 Score=37.93 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=76.2
Q ss_pred eehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeec
Q 000110 964 LVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVW 1043 (2163)
Q Consensus 964 ~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w 1043 (2163)
.-+..||.++..+...|+..+|+.+.++|..+... .
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----------------------~--------------------- 68 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----------------------P--------------------- 68 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----------------------c---------------------
Confidence 34568899999999999999999999999874210 0
Q ss_pred cCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhch
Q 000110 1044 SFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLW 1123 (2163)
Q Consensus 1044 ~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~W 1123 (2163)
||. .......|.++...|+-.+|+..+..+-.+ .|-...++ ..+|.+|.+.+..
T Consensus 69 ---------------~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~-~~lg~~~~~~g~~ 122 (172)
T PRK02603 69 ---------------NDR-----SYILYNMGIIYASNGEHDKALEYYHQALEL-----NPKQPSAL-NNIAVIYHKRGEK 122 (172)
T ss_pred ---------------chH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHH-HHHHHHHHHcCCh
Confidence 011 113356799999999999999998876554 24334444 3679999998888
Q ss_pred HHHHHHHHHHHHHH
Q 000110 1124 DQAEKELKNAKQIL 1137 (2163)
Q Consensus 1124 d~Ae~EL~~Ak~~l 1137 (2163)
..|++.+..|.+.+
T Consensus 123 ~~a~~~~~~A~~~~ 136 (172)
T PRK02603 123 AEEAGDQDEAEALF 136 (172)
T ss_pred HhHhhCHHHHHHHH
Confidence 88887777776654
No 10
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=70.83 E-value=10 Score=36.06 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=49.4
Q ss_pred hhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHH
Q 000110 1111 SILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYK 1190 (2163)
Q Consensus 1111 S~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~ 1190 (2163)
.-||.+|+..+.||.|..-++.|-++...-... -..-+.....+|.+.+.. ++...|+.+|+
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------~~~~a~~~~~lg~~~~~~-----------g~~~~A~~~~~ 70 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEKALDIEEQLGDD-------HPDTANTLNNLGECYYRL-----------GDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH-------HHHHHHHHHHHHHHHHHT-----------THHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHH
Confidence 468999999999999999999999994433221 122366677888887776 55778999999
Q ss_pred HHHh
Q 000110 1191 SALD 1194 (2163)
Q Consensus 1191 sAld 1194 (2163)
.|++
T Consensus 71 ~al~ 74 (78)
T PF13424_consen 71 KALD 74 (78)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 11
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=67.98 E-value=8.7 Score=31.93 Aligned_cols=35 Identities=31% Similarity=0.361 Sum_probs=26.1
Q ss_pred HHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhh
Q 000110 968 LYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQE 1002 (2163)
Q Consensus 968 LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~ 1002 (2163)
-+..|+..+...|+..+|+.+..+++.+|.++|-.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~ 38 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRERLLGP 38 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcc
Confidence 46789999999999999999999999999998753
No 12
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=66.83 E-value=1.1e+02 Score=33.10 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=27.8
Q ss_pred eehhHHHHhHHHHHhcchHHHHHHHHHHHHHH
Q 000110 964 LVGYLYYDLCERLIANGRLLEALSYAIEAHRL 995 (2163)
Q Consensus 964 ~a~~LyydL~erl~~~G~l~~A~syakEa~~L 995 (2163)
..+..|+.++.-+...|+..+|+.+..++.+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 60 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH 60 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34688999999999999999999999988654
No 13
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=64.91 E-value=20 Score=34.04 Aligned_cols=71 Identities=14% Similarity=0.043 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccC-CcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHH
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQS-LPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILV 1138 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~-Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~ 1138 (2163)
.....+|.++-..|+-++|+.++.---.|-...+ -...++..-.-||.+|++++..|.|++=++-|-++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4457789999999999999999998877732222 2356788889999999999999999999999988865
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=63.57 E-value=3e+02 Score=36.26 Aligned_cols=227 Identities=12% Similarity=0.000 Sum_probs=124.8
Q ss_pred HHHhHHHhccccchhhhhhhhccCCcccchhhhhhhhhhhccCCCCccccCCCCcccccHHhHHHHHHHhhccCCCCCCc
Q 000110 882 LVNLAEQCGELSKSIEFWMGCLQGSQPLLVGFQQSLLFLFANSSHGCYISKSSVQPCITIHDVKEAASELISSVPVTPRS 961 (2163)
Q Consensus 882 i~~~~~~~g~~~~~~~fw~~~~~~~~~~~v~~q~~~~~l~~~~~~~~~~~~~~f~~~~~~~~v~~aA~~lis~~p~~~~s 961 (2163)
+.....+.|+.-+++..+..-++..|....-... ...+.. ..+ ..++-.+.+..+...-|.+.
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~--~~~------------~~~~A~~~~~~~~~~~~~~~-- 703 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIG-LAQLLL--AAK------------RTESAKKIAKSLQKQHPKAA-- 703 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHH--HcC------------CHHHHHHHHHHHHhhCcCCh--
Confidence 3444556788888888888777766654332222 222211 111 13555666666666666543
Q ss_pred eeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCcccccccccee
Q 000110 962 VFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASE 1041 (2163)
Q Consensus 962 ~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~ 1041 (2163)
..|+.++..+...|+..+|+.+-+++.++...- ..-+ .... -....|... .-++...... +
T Consensus 704 -----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~--~l~~---~~~~~g~~~-------~A~~~~~~~l-~ 764 (899)
T TIGR02917 704 -----LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAI--KLHR---ALLASGNTA-------EAVKTLEAWL-K 764 (899)
T ss_pred -----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHH--HHHH---HHHHCCCHH-------HHHHHHHHHH-H
Confidence 346667777888999999999999887753110 0000 0000 000000000 0000000000 0
Q ss_pred eccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhh
Q 000110 1042 VWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQ 1121 (2163)
Q Consensus 1042 ~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~ 1121 (2163)
..|. ..+.....|.++...|+=.+|+..++..-... |-. ...-..||.+|.+.+
T Consensus 765 ~~~~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~-~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 765 THPN--------------------DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-----PDN-AVVLNNLAWLYLELK 818 (899)
T ss_pred hCCC--------------------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHhcC
Confidence 0111 13566788999999999999999998765543 322 233356799999998
Q ss_pred chHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhcc
Q 000110 1122 LWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1122 ~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKl 1196 (2163)
. +.|..-++.|-++-.++. .+-..+|.+.... ++...|+..|+.|++.-
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-----------g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIP--------------AILDTLGWLLVEK-----------GEADRALPLLRKAVNIA 867 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCc--------------HHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhC
Confidence 8 666666655554322211 1122445543322 55678999999998743
No 15
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=54.35 E-value=76 Score=28.12 Aligned_cols=61 Identities=15% Similarity=0.031 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHH
Q 000110 1069 SVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQ 1135 (2163)
Q Consensus 1069 S~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~ 1135 (2163)
.....|.++-..|+-++|...+.-...+.... + ..-..+|.+|...+.++.|..-++.+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDN--A----KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--h----hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 34455666666788888888876654443221 1 2334678888888888888877766543
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=51.55 E-value=1.6e+02 Score=35.77 Aligned_cols=116 Identities=13% Similarity=0.068 Sum_probs=79.5
Q ss_pred HHhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeecccccccccccc
Q 000110 941 IHDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGD 1020 (2163)
Q Consensus 941 ~~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~ 1020 (2163)
.++..+...+.+...|.+ ...++.|+.-+...|+..+|+.+-+++..+-- .
T Consensus 196 ~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----------------~----- 246 (389)
T PRK11788 196 LDAARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQDP-----------------E----- 246 (389)
T ss_pred HHHHHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-----------------h-----
Confidence 355555555555555543 34678899999999999999999888865200 0
Q ss_pred ccccccCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcccccccc
Q 000110 1021 ISQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQ 1100 (2163)
Q Consensus 1021 ~s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q 1100 (2163)
. +.+...++|.++...|+-++|..+++....+.
T Consensus 247 -~-------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--- 279 (389)
T PRK11788 247 -Y-------------------------------------------LSEVLPKLMECYQALGDEAEGLEFLRRALEEY--- 279 (389)
T ss_pred -h-------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 0 01122456777888899999999988765553
Q ss_pred CCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1101 SLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1101 ~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
|-.-++ ..+|++|.+.+.+|.|.+-++.|-+.
T Consensus 280 --p~~~~~--~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 280 --PGADLL--LALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred --CCchHH--HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 222222 57999999999999999888766544
No 17
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=49.68 E-value=1.1e+02 Score=33.59 Aligned_cols=111 Identities=18% Similarity=0.111 Sum_probs=79.1
Q ss_pred CCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCcccccccc
Q 000110 959 PRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSV 1038 (2163)
Q Consensus 959 ~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ 1038 (2163)
-+.....++.||-++-.+.++|+..+|+.+.++|+.+.. +..
T Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~----------------------~~~---------------- 69 (168)
T CHL00033 28 TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI----------------------DPY---------------- 69 (168)
T ss_pred CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----------------------cch----------------
Confidence 445556788999999999999999999999999987710 000
Q ss_pred ceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHH
Q 000110 1039 ASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYR 1118 (2163)
Q Consensus 1039 a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~ 1118 (2163)
. ......-.|++++..|.-+||+..+.--..+-.... .-...+|.+|.
T Consensus 70 ------------------~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~------~~~~~la~i~~ 117 (168)
T CHL00033 70 ------------------D--------RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP------QALNNMAVICH 117 (168)
T ss_pred ------------------h--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH------HHHHHHHHHHH
Confidence 0 011335579999999999999999866554422221 22335566666
Q ss_pred -------hhhchHHHHHHHHHHHHHHHh
Q 000110 1119 -------KKQLWDQAEKELKNAKQILVE 1139 (2163)
Q Consensus 1119 -------kk~~Wd~Ae~EL~~Ak~~l~~ 1139 (2163)
+++.++.|..-++.|.+++..
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 999999999888888776554
No 18
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=45.19 E-value=1e+02 Score=40.73 Aligned_cols=124 Identities=19% Similarity=0.160 Sum_probs=86.8
Q ss_pred HHHHHHHhcChhhHHHHhhhcccccc--c-cCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHh----------
Q 000110 1073 VGIIHELVGNGVEAEAFLLWGKSISC--T-QSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVE---------- 1139 (2163)
Q Consensus 1073 vg~ihE~iGng~EAe~~l~~Gk~iS~--~-q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~---------- 1139 (2163)
.|.+|=-.|+=.||.-++--=-+|.- + -.-|- .+++=.=|+.+|+|+|-.+.|+.=.+.|-+|.++
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~-va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA-VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 35555556666666655543333221 1 12233 3344455899999999999999999999999888
Q ss_pred ----ccccccccccchhhhhhhhhhhhhcccccCCCCCCC-----------CcchhhhhhHHHHHHHHHhccC
Q 000110 1140 ----KSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRG-----------NTLIERLSNAEKLYKSALDKLN 1197 (2163)
Q Consensus 1140 ----~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~-----------~~~~~~l~~A~~~Y~sAldKln 1197 (2163)
+.+...|.+=+.-..+.+.++...+....++|.+-. -...++...|+.||++|+.++-
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 345566777777777888888888888887777621 3445788899999999999885
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=45.04 E-value=1.1e+02 Score=40.63 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccc
Q 000110 1069 SVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLK 1148 (2163)
Q Consensus 1069 S~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~ 1148 (2163)
+.++.|.++...|+=+||+..+...-.+. |-. ...-..+|.+|.+.+.|+.|..-++.|-++--++
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-------- 432 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-----SED-PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------- 432 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC--------
Confidence 44567777877888888888877654432 211 1223458888888888888888777765542221
Q ss_pred cchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHh
Q 000110 1149 CRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALD 1194 (2163)
Q Consensus 1149 C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAld 1194 (2163)
+....++|.+.... +++..|+..|+.|+.
T Consensus 433 ------~~~~~~la~~~~~~-----------g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 433 ------IFSHIQLGVTQYKE-----------GSIASSMATFRRCKK 461 (615)
T ss_pred ------HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHH
Confidence 12344566655443 345678888888875
No 20
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.53 E-value=1.1e+02 Score=39.71 Aligned_cols=188 Identities=18% Similarity=0.099 Sum_probs=115.1
Q ss_pred CCCCcEEEEeCcccccccccccC----CC-CCccccccCChHHHHHHHHHHhhhhhhhcccc-CCcccccCCCcEEEECC
Q 000110 1872 GHREPTILVLDCEVQMLPWENIP----IL-RNHEVYRMPSVGSIAATLERIHRHEQLVKGLL-ATFPLIDPLDAFYLLNP 1945 (2163)
Q Consensus 1872 ~~r~hvILVLDk~L~~fPWESLP----~L-r~~sVSRmPSL~~L~~~L~r~~~~~~~~~~~~-~~~~~VD~~~~~YILNP 1945 (2163)
..-.+++.++|..|+..|.-.|= .| ...+|..+|+++.+...-.+. .+ ..+. .+...-+ +=--++
T Consensus 160 ~~i~tl~f~~d~~Lr~vP~aaL~dg~~yLieky~i~~sp~~qL~~~~~~~~----~~-l~vl~~g~s~~~----~~~~~~ 230 (420)
T COG4995 160 LEIKTLIFVLDGALRNVPMAALYDGKQYLIEKYAIATSPGLQLTDSKPLRQ----QN-LKVLAAGLSEPS----GPARTG 230 (420)
T ss_pred cCcceeEeecCcccccCcHHHhcccchhhhhhhhhhcCchhhhcCcccccc----cc-hhHHHhccCccc----cccccc
Confidence 34568999999999999976651 12 225888888876542110000 00 0000 0000000 001224
Q ss_pred CCChHHHHHHHHHHHhcCCcccc--cCCCCCHHHHHHHHh--cCCeEEEeecccccc---------ccchhh-hcc----
Q 000110 1946 SGDLSETQLLFEDWFRDQNLVGK--AGSAPTAEELTLALK--SHDLFIYLGHGSGSQ---------YISRHD-LLK---- 2007 (2163)
Q Consensus 1946 sGDL~~TQ~rF~~~f~~~~W~Gi--vGr~PseeE~~~aL~--~~DLFLYfGHGsGeQ---------YI~~~~-I~r---- 2007 (2163)
-.+|+.++...+.+=... |.+. -|..=+.+-+.+.+. +.++.-+.+||...- +..+.. +..
T Consensus 231 ~~~Lp~~~~Ev~~Ia~~~-~~~~~ll~q~Ft~~~~~~~~~~~~~~vvHlATHg~f~s~~p~~S~l~~~~~~~~~~~~~~~ 309 (420)
T COG4995 231 FDALPFAALEVETIAAIF-PPQKLLLNQAFTAANLAQEIDTKPYSVVHLATHGQFSSGNPEDSFLLLWDGPINVTELDIL 309 (420)
T ss_pred ccccchHHHHHHHHHHhh-hhHHhhhcccchhhHHhhhhhcCCCceEEEeccccccCCCcccceeeecCCCCcccHHHHH
Confidence 457888887776654333 5432 355555666666666 788999999986544 111111 111
Q ss_pred -------ccccccEEEecCCccccccCCCCC-CCchHHHHHhcCCceeeeecccCChhhHHHHHHHHHHHHh
Q 000110 2008 -------LEKCAATFLMGCSSGSLSLNGCYI-PQGTPLSYLLAGSPVIVANLWDVTDKDIDRFGKTMLDAWL 2071 (2163)
Q Consensus 2008 -------L~~CAasLLmGCSSg~L~~~G~fE-P~Gt~l~YLlAGcP~VVGNLWDVTDkDIDRFt~~LLe~W~ 2071 (2163)
+..+-.+.|--|--|.- .|+-+ --|.+--.+-||.+.+||.||-|-|.=--++-..+.++|.
T Consensus 310 ~~~~~~~~~~vdLvVLSACqTa~g--~gd~~a~lGLag~a~~aGa~s~laSLW~VdD~sTa~LM~eFY~~L~ 379 (420)
T COG4995 310 LRNRNNNLLPVELVVLSACQTALG--EGDGRAYLGLAGGAVYAGAKSALASLWSVDDESTAALMTEFYRKLQ 379 (420)
T ss_pred HHhcccCCCCeeeEEEecchhccC--CCCChhhhhHHHHHHHhchhhhhheeeeeCcHHHHHHHHHHHHHHh
Confidence 12334578888887654 34443 4599999999999999999999999998888888888875
No 21
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=43.34 E-value=66 Score=35.24 Aligned_cols=64 Identities=13% Similarity=-0.045 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHH
Q 000110 1071 LQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQIL 1137 (2163)
Q Consensus 1071 lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l 1137 (2163)
++.|..+..-|+=++|+..++-.-.+.- + |......-..||.+|.+++..+.|..-++.|-++-
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~--~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~ 102 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEI--D-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN 102 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccc--c-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6778888888999999999987765521 1 22222233568999999999999999998887763
No 22
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=42.06 E-value=47 Score=37.48 Aligned_cols=59 Identities=32% Similarity=0.446 Sum_probs=40.1
Q ss_pred cccccCCCCCHHHHHHHHhc--------CCeEEEeeccccc---------------cccc--hhhhccccccccEEEecC
Q 000110 1965 LVGKAGSAPTAEELTLALKS--------HDLFIYLGHGSGS---------------QYIS--RHDLLKLEKCAATFLMGC 2019 (2163)
Q Consensus 1965 W~GivGr~PseeE~~~aL~~--------~DLFLYfGHGsGe---------------QYI~--~~~I~rL~~CAasLLmGC 2019 (2163)
+.=..--.|+.+++.+.+.+ .=||-|.|||-=. ||++ -.+|+..-..+..+.|.|
T Consensus 64 ~~~~~~~dpt~e~~~~~~~~~R~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~Psi~V~DC 143 (154)
T PF14538_consen 64 ARYKQSLDPTVEDLKRLCQSLRRNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGSPSIYVFDC 143 (154)
T ss_pred CcEEEecCCCHHHHHHHHHHHHhhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCCCEEEEEEC
Confidence 33445566999999997642 2299999999432 4443 333444456788999999
Q ss_pred Cccc
Q 000110 2020 SSGS 2023 (2163)
Q Consensus 2020 SSg~ 2023 (2163)
|+|.
T Consensus 144 ~~AG 147 (154)
T PF14538_consen 144 SNAG 147 (154)
T ss_pred CcHH
Confidence 9873
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=41.97 E-value=9.8e+02 Score=31.77 Aligned_cols=94 Identities=13% Similarity=-0.018 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccccccc
Q 000110 1070 VLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKC 1149 (2163)
Q Consensus 1070 ~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C 1149 (2163)
....|.++...|+=.+|...++..-...... - .-..+|.+|.+.+.|+.|.+.++.+.+. ...
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~--~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~~------- 768 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSS-----Q--NAIKLHRALLASGNTAEAVKTLEAWLKT---HPN------- 768 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-----h--HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC-------
Confidence 3456889999999999999998766554322 1 1234899999999999999888766553 221
Q ss_pred chhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1150 RLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1150 ~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.+.+...+|++.... ++...|+.+|+.++++
T Consensus 769 ----~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 769 ----DAVLRTALAELYLAQ-----------KDYDKAIKHYRTVVKK 799 (899)
T ss_pred ----CHHHHHHHHHHHHHC-----------cCHHHHHHHHHHHHHh
Confidence 245567778777665 3455799999999864
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=41.50 E-value=92 Score=33.54 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccccc
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCL 1147 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~ 1147 (2163)
+...+.|.++-.-|+-++|...+.....+. |-.. ..-..+|.+|.+++.+|.|++-++.|-++..++.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------ 99 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-----PDDY-LAYLALALYYQQLGELEKAEDSFRRALTLNPNNG------ 99 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------
Confidence 334578999999999999999998765442 3332 3335699999999999999999988876532221
Q ss_pred ccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1148 KCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1148 ~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.....+|.+.... +++..|+..|+.+++.
T Consensus 100 --------~~~~~~~~~~~~~-----------g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 100 --------DVLNNYGTFLCQQ-----------GKYEQAMQQFEQAIED 128 (234)
T ss_pred --------HHHHHHHHHHHHc-----------ccHHHHHHHHHHHHhc
Confidence 2334445444322 4677899999999863
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=41.02 E-value=89 Score=41.34 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccc
Q 000110 1071 LQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCR 1150 (2163)
Q Consensus 1071 lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~ 1150 (2163)
..-|.++-..|+-.+|...+.-...+.- -.+-+ -.-||.+|.+.+..|.|..-++.|.++.-++
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P-----~~~~~-~~~la~~~~~~g~~~eA~~~~~~al~~~P~~---------- 466 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLDP-----DFIFS-HIQLGVTQYKEGSIASSMATFRRCKKNFPEA---------- 466 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCc-----cCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------
Confidence 3468888899999999999987766542 22222 2369999999999999999999887653222
Q ss_pred hhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHh
Q 000110 1151 LILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALD 1194 (2163)
Q Consensus 1151 l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAld 1194 (2163)
..+...+|++.... +++..|+..|+.|+.
T Consensus 467 ----~~~~~~lg~~~~~~-----------g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 467 ----PDVYNYYGELLLDQ-----------NKFDEAIEKFDTAIE 495 (615)
T ss_pred ----hHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHh
Confidence 23445667665443 467789999999985
No 26
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=40.68 E-value=46 Score=39.39 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCcccccCCCCCHHHHHHHHh---------cCC--eEEEeeccccccccchh
Q 000110 1953 QLLFEDWFRDQNLVGKAGSAPTAEELTLALK---------SHD--LFIYLGHGSGSQYISRH 2003 (2163)
Q Consensus 1953 Q~rF~~~f~~~~W~GivGr~PseeE~~~aL~---------~~D--LFLYfGHGsGeQYI~~~ 2003 (2163)
.+.+...|++.|++-.+..-++.+|+.++|. +.| +++|+|||. +.||-+.
T Consensus 32 ~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~-~~~l~~~ 92 (241)
T smart00115 32 AENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGE-EGGIYGT 92 (241)
T ss_pred HHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCC-CCeEEEe
Confidence 3457777778899999999999999999882 134 667999995 5565443
No 27
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=38.32 E-value=99 Score=27.37 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHH
Q 000110 1070 VLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQIL 1137 (2163)
Q Consensus 1070 ~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l 1137 (2163)
..+.|.++-.-|+-.+|...+...-.+.-. -| ..-..+|.+|...+.|+.|.+-++.+-++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD--NA----DAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc--cH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 355677777789999999998876554322 12 233568999999999999998887776643
No 28
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=36.90 E-value=43 Score=27.17 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.1
Q ss_pred hhhHHHHhhhchHHHHHHHHHHHHHH
Q 000110 1112 ILGKLYRKKQLWDQAEKELKNAKQIL 1137 (2163)
Q Consensus 1112 ~LG~ly~kk~~Wd~Ae~EL~~Ak~~l 1137 (2163)
.+|++|.+++.+|.|.+-++.|.++=
T Consensus 6 ~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 6 NLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 58999999999999999999988763
No 29
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=36.60 E-value=68 Score=25.77 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.9
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHH
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRL 995 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~L 995 (2163)
..+|.|+.-+...|+..+|+.+-.+|+++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999886
No 30
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=35.76 E-value=2.2e+02 Score=33.97 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCCCChHHHHHHHHHHHhc-CCcc-cccCCCCCHHHHHHHHhc---CCeEEEeeccccccccchhhhccccccccEEEec
Q 000110 1944 NPSGDLSETQLLFEDWFRD-QNLV-GKAGSAPTAEELTLALKS---HDLFIYLGHGSGSQYISRHDLLKLEKCAATFLMG 2018 (2163)
Q Consensus 1944 NPsGDL~~TQ~rF~~~f~~-~~W~-GivGr~PseeE~~~aL~~---~DLFLYfGHGsGeQYI~~~~I~rL~~CAasLLmG 2018 (2163)
.|..+....-+.+..+.+. ..|+ -++|..|..+++.+...+ .+-+.|.|+=.. .++..+-..+-++++.
T Consensus 198 ~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~------~~l~~~~~~ad~~v~p 271 (367)
T cd05844 198 VEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPH------AEVRELMRRARIFLQP 271 (367)
T ss_pred ccccChHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCH------HHHHHHHHhCCEEEEC
Confidence 3444544444445544443 3454 356777777777766655 355667665333 3333322223334432
Q ss_pred CCccccccCCCCCCCc-hHHHHHhcCCceeeeeccc-------------CChhhHHHHHHHHHH
Q 000110 2019 CSSGSLSLNGCYIPQG-TPLSYLLAGSPVIVANLWD-------------VTDKDIDRFGKTMLD 2068 (2163)
Q Consensus 2019 CSSg~L~~~G~fEP~G-t~l~YLlAGcP~VVGNLWD-------------VTDkDIDRFt~~LLe 2068 (2163)
|. ....|..|..| +++-+|.+|+|+|+.+.-. +.+.|.+.++.++.+
T Consensus 272 -s~--~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~ 332 (367)
T cd05844 272 -SV--TAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGR 332 (367)
T ss_pred -cc--cCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHH
Confidence 21 22356667665 6789999999999765422 224577777766654
No 31
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=34.79 E-value=1e+02 Score=28.31 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1071 LQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1071 lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
++-|..+---|+-++|+..++.--... | .-.-.-..||.+|..++.|+.|..-++.|-++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-----P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD-----P-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS-----T-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 466888888999999999998765443 3 35666778999999999999999888776543
No 32
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=32.95 E-value=42 Score=38.26 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCccccc--CCCCCHHHHHHHHhc-------CC--eEEEeecccc
Q 000110 1953 QLLFEDWFRDQNLVGKA--GSAPTAEELTLALKS-------HD--LFIYLGHGSG 1996 (2163)
Q Consensus 1953 Q~rF~~~f~~~~W~Giv--Gr~PseeE~~~aL~~-------~D--LFLYfGHGsG 1996 (2163)
.+.|..+|++.||.-.. ...|+.+++.++|++ .| +|.|.|||.-
T Consensus 24 ~~~~~~~L~~~gf~~~~~l~~~~t~~~i~~~l~~l~~~~~~~D~~~~yfsGHG~~ 78 (248)
T PF00656_consen 24 AEAMAEALEKLGFDVENILIDNATRANILKALRELLQRAQPGDSVVFYFSGHGIQ 78 (248)
T ss_dssp HHHHHHHHHHTTEEEEEEEEESSSHHHHHHHHHHHHTSGGTCSEEEEEEESEEET
T ss_pred HHHHHHHHHHcCCceeeccccchHHHHHHHHHhhhhccCCCCCeeEEEEeccccc
Confidence 44588888778987766 788999999998842 45 5668999944
No 33
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=27.84 E-value=1.1e+02 Score=24.79 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=27.4
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHH
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLR 996 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr 996 (2163)
-.||.++.-....|+..+|+++-+++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 468999999999999999999999998875
No 34
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=26.45 E-value=77 Score=26.95 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=19.3
Q ss_pred hhhhHHHHhhhchHHHHHHHHHHH
Q 000110 1111 SILGKLYRKKQLWDQAEKELKNAK 1134 (2163)
Q Consensus 1111 S~LG~ly~kk~~Wd~Ae~EL~~Ak 1134 (2163)
+.||.+|++.|.||.|..=.+.|-
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 358999999999999988777654
No 35
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=25.67 E-value=3.8e+02 Score=32.31 Aligned_cols=102 Identities=20% Similarity=0.060 Sum_probs=75.6
Q ss_pred eeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceee
Q 000110 963 FLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEV 1042 (2163)
Q Consensus 963 f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~ 1042 (2163)
+...+..+.++.-+...|++.+|..++.++.++.. .+
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p--------------------------------~~----------- 147 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP--------------------------------DD----------- 147 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------------------------------CC-----------
Confidence 44467777889999999999999999999887510 00
Q ss_pred ccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhc
Q 000110 1043 WSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQL 1122 (2163)
Q Consensus 1043 w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~ 1122 (2163)
|| -..-.|.++..-|.-+||+.++.-+....-. -|...+..--.+|.+|..+|.
T Consensus 148 ----------------~~--------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 148 ----------------AW--------AVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred ----------------cH--------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCC
Confidence 22 1234588889999999999999877654322 233333333468999999999
Q ss_pred hHHHHHHHHHH
Q 000110 1123 WDQAEKELKNA 1133 (2163)
Q Consensus 1123 Wd~Ae~EL~~A 1133 (2163)
+|.|..-++.+
T Consensus 202 ~~~A~~~~~~~ 212 (355)
T cd05804 202 YEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHH
Confidence 99999999887
No 36
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=24.25 E-value=2.5e+02 Score=31.09 Aligned_cols=67 Identities=13% Similarity=-0.000 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHH
Q 000110 1069 SVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILV 1138 (2163)
Q Consensus 1069 S~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~ 1138 (2163)
....-|..+..-|+-.||..++.-...+.- +-|-...+ =-.||.+|.+.+.++.|..-++.|-++..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEE--DPNDRSYI-LYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh--ccchHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 456778889999999999999986554432 21211112 24689999999999999999888877643
No 37
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=24.03 E-value=1e+02 Score=28.56 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhh-chHHHHHHHHHHHHH
Q 000110 1069 SVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQ-LWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1069 S~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~-~Wd~Ae~EL~~Ak~~ 1136 (2163)
...+.|.++-..|+=.+|+..+.-+-.+...+. .+ =--+|.+|.+.+ .|+.|.+.++.|-++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~-----~~-~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA-----EA-YYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH-----HH-HHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HH-HHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 456789999999999999999998777753332 22 235899999999 899999998887654
No 38
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=23.51 E-value=1.4e+02 Score=30.98 Aligned_cols=81 Identities=15% Similarity=-0.040 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccc-cc
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINL-SC 1146 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~-~C 1146 (2163)
+.....|.++-..|+-++|+..+...-.+. |-. ..+=--+|.+|.+.+.++.|.+.++.|-++--++...+ .+
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALD-----PDD-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELK 125 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 334567888888899999999998765553 222 22225699999999999999999998888765554422 45
Q ss_pred cccchhhh
Q 000110 1147 LKCRLILE 1154 (2163)
Q Consensus 1147 ~~C~l~l~ 1154 (2163)
.+|...+|
T Consensus 126 ~~~~~~~~ 133 (135)
T TIGR02552 126 ERAEAMLE 133 (135)
T ss_pred HHHHHHHh
Confidence 55555444
No 39
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.64 E-value=4.3e+02 Score=31.63 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=61.6
Q ss_pred CCCCChHHHHHHHHHHHhcCCcc-cccCCCCCHHHHHHHHhcC---CeEEEeeccccccccchhhhccccccccEEEecC
Q 000110 1944 NPSGDLSETQLLFEDWFRDQNLV-GKAGSAPTAEELTLALKSH---DLFIYLGHGSGSQYISRHDLLKLEKCAATFLMGC 2019 (2163)
Q Consensus 1944 NPsGDL~~TQ~rF~~~f~~~~W~-GivGr~PseeE~~~aL~~~---DLFLYfGHGsGeQYI~~~~I~rL~~CAasLLmGC 2019 (2163)
.|..++...-+.|..+.+...|+ -++|..|..+++.+..... +-..|.|- . .++..+-..+-++++-
T Consensus 207 ~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~------~--~~~~~~~~~~d~~v~p- 277 (371)
T cd04962 207 RPVKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGK------Q--DHVEELLSIADLFLLP- 277 (371)
T ss_pred ccccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecC------c--ccHHHHHHhcCEEEeC-
Confidence 46666666555565554444554 3467788888877766543 34556652 1 2343332223333332
Q ss_pred CccccccCCCCCCCc-hHHHHHhcCCceeeeec-------------ccCChhhHHHHHHHHHH
Q 000110 2020 SSGSLSLNGCYIPQG-TPLSYLLAGSPVIVANL-------------WDVTDKDIDRFGKTMLD 2068 (2163)
Q Consensus 2020 SSg~L~~~G~fEP~G-t~l~YLlAGcP~VVGNL-------------WDVTDkDIDRFt~~LLe 2068 (2163)
| ..|+.| +++-+|.+|+|+|+-+. |-+...|++-++.++.+
T Consensus 278 -s-------~~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~ 332 (371)
T cd04962 278 -S-------EKESFGLAALEAMACGVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALS 332 (371)
T ss_pred -C-------CcCCCccHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHH
Confidence 2 134444 78999999999988432 22444577777776654
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=22.59 E-value=4.5e+02 Score=31.99 Aligned_cols=121 Identities=17% Similarity=0.071 Sum_probs=79.0
Q ss_pred CcccccHHhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeecccccc
Q 000110 935 VQPCITIHDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKE 1014 (2163)
Q Consensus 935 f~~~~~~~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~ 1014 (2163)
++.++.|..+.+ +|..+|.++.. -+..||.++-.+.+.|+..+|...-++|+++.
T Consensus 40 ~~~e~~i~~~~~----~l~~~~~~~~~---~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~------------------ 94 (296)
T PRK11189 40 LQQEVILARLNQ----ILASRDLTDEE---RAQLHYERGVLYDSLGLRALARNDFSQALALR------------------ 94 (296)
T ss_pred hHHHHHHHHHHH----HHccccCCcHh---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------------------
Confidence 566666666555 56666655432 23568899988999999999988766665531
Q ss_pred ccccccccccccCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcc
Q 000110 1015 YNDAGDISQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGK 1094 (2163)
Q Consensus 1015 ~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk 1094 (2163)
|.+ -+.....|.++...|+=++|+..+...-
T Consensus 95 -----------------------------P~~--------------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 95 -----------------------------PDM--------------------ADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred -----------------------------CCC--------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 100 0334567777788888888887777665
Q ss_pred ccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHH
Q 000110 1095 SISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQ 1135 (2163)
Q Consensus 1095 ~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~ 1135 (2163)
.+. |-+..++ --+|.+|...+.+|.|...++.|-+
T Consensus 126 ~l~-----P~~~~a~-~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 126 ELD-----PTYNYAY-LNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HhC-----CCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 543 3333343 2377888888888888777766654
No 41
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.28 E-value=1.9e+02 Score=31.15 Aligned_cols=118 Identities=20% Similarity=0.159 Sum_probs=82.9
Q ss_pred HHhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeecccccccccccc
Q 000110 941 IHDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGD 1020 (2163)
Q Consensus 941 ~~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~ 1020 (2163)
.+.+.+.+..++.+-|.+. .+..-.+.|+..++..|++.+|...=+++.. .
T Consensus 27 ~~~~~~~~~~l~~~~~~s~----ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~--------------------~----- 77 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSP----YAALAALQLAKAAYEQGDYDEAKAALEKALA--------------------N----- 77 (145)
T ss_pred HHHHHHHHHHHHHHCCCCh----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------------h-----
Confidence 5677788889999888775 3455677899999999999998754332211 0
Q ss_pred ccccccCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcccccccc
Q 000110 1021 ISQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQ 1100 (2163)
Q Consensus 1021 ~s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q 1100 (2163)
. |+. ++ + -...|..|-++---|+-+||...|.-..
T Consensus 78 -~---------------------~d~------------~l---~--~~a~l~LA~~~~~~~~~d~Al~~L~~~~------ 112 (145)
T PF09976_consen 78 -A---------------------PDP------------EL---K--PLARLRLARILLQQGQYDEALATLQQIP------ 112 (145)
T ss_pred -C---------------------CCH------------HH---H--HHHHHHHHHHHHHcCCHHHHHHHHHhcc------
Confidence 0 000 00 0 1234567888888899999999995522
Q ss_pred CCcchhhHHHhhhhHHHHhhhchHHHHHHHHHH
Q 000110 1101 SLPQFIVAFSSILGKLYRKKQLWDQAEKELKNA 1133 (2163)
Q Consensus 1101 ~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~A 1133 (2163)
+ +.|-..+...+|.+|.++|.||.|....+.|
T Consensus 113 ~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 113 D-EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred C-cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 2 2244456779999999999999999887765
No 42
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=21.11 E-value=61 Score=39.42 Aligned_cols=57 Identities=25% Similarity=0.469 Sum_probs=35.9
Q ss_pred ECCCCChHHHHHHHHHHHhcCCcccccCCCCCH---HHHHHHHhcCCeEEEe-eccccccccchhhh
Q 000110 1943 LNPSGDLSETQLLFEDWFRDQNLVGKAGSAPTA---EELTLALKSHDLFIYL-GHGSGSQYISRHDL 2005 (2163)
Q Consensus 1943 LNPsGDL~~TQ~rF~~~f~~~~W~GivGr~Pse---eE~~~aL~~~DLFLYf-GHGsGeQYI~~~~I 2005 (2163)
=+|+-|-.+++-+.+.+++- ++||-|.. ..-+..=+++++|||+ ||| |..|++=+.+
T Consensus 99 d~vevdyrgyevtvEnflr~-----LTgR~~~~tprSKrlltDe~SNIlIYmtGHG-gd~FlKFqd~ 159 (309)
T KOG1349|consen 99 DDVEVDYRGYEVTVENFLRV-----LTGRHPNNTPRSKRLLTDEGSNILIYLTGHG-GDGFLKFQDA 159 (309)
T ss_pred CcceeecccchhHHHHHHHH-----HcCCCCCCCchhhhhcccCCCcEEEEEccCC-CccceecccH
Confidence 35677888999999998864 34554432 2112222568899997 887 5556654433
No 43
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=21.10 E-value=1.2e+02 Score=24.41 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=20.7
Q ss_pred hhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1112 ILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1112 ~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
.||.+|.+.+.|+.|..-++.|-++
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5899999999999999988877654
No 44
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.55 E-value=2.2e+02 Score=33.59 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=25.2
Q ss_pred CCCc-hHHHHHhcCCceeeeeccc--------------CChhhHHHHHHHHHH
Q 000110 2031 IPQG-TPLSYLLAGSPVIVANLWD--------------VTDKDIDRFGKTMLD 2068 (2163)
Q Consensus 2031 EP~G-t~l~YLlAGcP~VVGNLWD--------------VTDkDIDRFt~~LLe 2068 (2163)
|+.| +++.+|.+|+|+|+..... ++..|.|.++.++.+
T Consensus 276 e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~ 328 (357)
T cd03795 276 EAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRR 328 (357)
T ss_pred cccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHH
Confidence 4445 4678999999999755332 233567777777664
No 45
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=20.51 E-value=2.5e+02 Score=34.85 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=59.9
Q ss_pred ECCCCChHHHHHHHHHHHhc-CCcc-cccCCCCCHHHHHHHHhcC---CeEEEeeccccccccchhhhccccccccEEEe
Q 000110 1943 LNPSGDLSETQLLFEDWFRD-QNLV-GKAGSAPTAEELTLALKSH---DLFIYLGHGSGSQYISRHDLLKLEKCAATFLM 2017 (2163)
Q Consensus 1943 LNPsGDL~~TQ~rF~~~f~~-~~W~-GivGr~PseeE~~~aL~~~---DLFLYfGHGsGeQYI~~~~I~rL~~CAasLLm 2017 (2163)
++|..++...-+.+..+.+. ..|. -++|..|..+++.+...+. |-+.+.|.= +.+++..+-..+-++++
T Consensus 202 l~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~------~~~~~~~~l~~ad~~v~ 275 (398)
T cd03796 202 LVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAV------PHERVRDVLVQGHIFLN 275 (398)
T ss_pred cchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCC------CHHHHHHHHHhCCEEEe
Confidence 34555555444445444332 3555 3567777777777666553 345666542 23333332233334443
Q ss_pred cCCccccccCCCCCCCc-hHHHHHhcCCceeeeecccCC-----------hhhHHHHHHHHHH
Q 000110 2018 GCSSGSLSLNGCYIPQG-TPLSYLLAGSPVIVANLWDVT-----------DKDIDRFGKTMLD 2068 (2163)
Q Consensus 2018 GCSSg~L~~~G~fEP~G-t~l~YLlAGcP~VVGNLWDVT-----------DkDIDRFt~~LLe 2068 (2163)
.|- .|+.| +++-+|.+|+|+|+-+.-... +.|.+-++.++.+
T Consensus 276 --pS~-------~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~~~~~~~~~~~l~~~l~~ 329 (398)
T cd03796 276 --TSL-------TEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDMILLAEPDVESIVRKLEE 329 (398)
T ss_pred --CCh-------hhccCHHHHHHHHcCCCEEECCCCCchhheeCCceeecCCCHHHHHHHHHH
Confidence 221 35666 788899999999875433221 2256666666654
Done!