Query 000110
Match_columns 2163
No_of_seqs 213 out of 268
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 16:40:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sf4_A G-protein-signaling mod 96.8 0.08 2.7E-06 59.3 21.2 329 714-1168 7-360 (406)
2 4a1s_A PINS, partner of inscut 96.6 0.54 1.9E-05 53.4 26.4 154 964-1197 221-374 (411)
3 3ro3_A PINS homolog, G-protein 96.4 0.045 1.5E-06 52.5 13.4 152 964-1195 7-158 (164)
4 3gw4_A Uncharacterized protein 95.6 0.22 7.6E-06 50.7 15.0 152 965-1196 25-177 (203)
5 3q15_A PSP28, response regulat 95.3 0.15 5E-06 58.6 13.9 166 947-1196 126-291 (378)
6 3sf4_A G-protein-signaling mod 95.2 0.16 5.5E-06 56.9 13.5 154 963-1196 184-337 (406)
7 3ro3_A PINS homolog, G-protein 94.8 0.25 8.4E-06 47.3 11.9 117 963-1140 46-162 (164)
8 3ro2_A PINS homolog, G-protein 94.8 0.35 1.2E-05 51.9 14.2 152 964-1195 181-332 (338)
9 4a1s_A PINS, partner of inscut 94.5 0.33 1.1E-05 55.2 14.0 152 965-1196 165-333 (411)
10 3edt_B KLC 2, kinesin light ch 94.3 0.67 2.3E-05 48.9 14.7 118 964-1140 83-202 (283)
11 3nf1_A KLC 1, kinesin light ch 94.1 0.66 2.2E-05 49.9 14.5 116 965-1139 110-227 (311)
12 3gw4_A Uncharacterized protein 94.0 0.36 1.2E-05 49.1 11.6 119 964-1142 64-182 (203)
13 3ieg_A DNAJ homolog subfamily 93.6 7.2 0.00025 42.6 21.6 206 884-1195 128-335 (359)
14 3ulq_A Response regulator aspa 93.4 0.53 1.8E-05 53.9 13.0 155 961-1195 98-253 (383)
15 3nf1_A KLC 1, kinesin light ch 93.1 1.2 4.2E-05 47.8 14.5 156 965-1196 26-183 (311)
16 2xpi_A Anaphase-promoting comp 92.4 2.9 9.8E-05 50.1 17.7 101 1070-1195 478-579 (597)
17 3ulq_A Response regulator aspa 92.2 1.5 5E-05 50.3 14.4 165 947-1195 128-293 (383)
18 1fch_A Peroxisomal targeting s 91.8 3.4 0.00012 45.9 16.3 69 1070-1138 288-361 (368)
19 3q15_A PSP28, response regulat 91.3 1.1 3.8E-05 51.4 12.1 153 963-1195 98-251 (378)
20 3ro2_A PINS homolog, G-protein 91.1 19 0.00063 38.6 25.7 115 964-1139 221-335 (338)
21 3edt_B KLC 2, kinesin light ch 91.0 2.4 8.1E-05 44.7 13.4 173 946-1197 25-200 (283)
22 2ho1_A Type 4 fimbrial biogene 89.9 2.3 7.9E-05 44.9 12.1 62 1071-1136 109-170 (252)
23 3fp2_A TPR repeat-containing p 89.7 9.2 0.00031 44.9 18.1 99 1072-1195 383-491 (537)
24 2qfc_A PLCR protein; TPR, HTH, 89.4 4.2 0.00014 45.2 14.3 149 966-1194 115-265 (293)
25 2xpi_A Anaphase-promoting comp 88.9 24 0.00081 42.3 21.1 205 820-1136 375-579 (597)
26 3hym_B Cell division cycle pro 88.0 5 0.00017 43.5 13.3 140 967-1195 126-265 (330)
27 3hym_B Cell division cycle pro 88.0 9.1 0.00031 41.5 15.4 197 883-1194 97-298 (330)
28 3vtx_A MAMA; tetratricopeptide 87.4 2 7E-05 43.5 9.3 162 966-1195 5-170 (184)
29 2y4t_A DNAJ homolog subfamily 87.3 46 0.0016 38.1 23.5 102 1067-1195 257-358 (450)
30 3uq3_A Heat shock protein STI1 87.2 3.9 0.00013 42.6 11.6 160 964-1195 77-236 (258)
31 3u4t_A TPR repeat-containing p 86.9 4.7 0.00016 42.9 12.2 31 965-995 73-103 (272)
32 3uq3_A Heat shock protein STI1 86.7 6.6 0.00023 40.9 12.9 103 1068-1195 80-202 (258)
33 3cv0_A Peroxisome targeting si 86.6 10 0.00036 40.9 14.8 69 1071-1139 244-318 (327)
34 2q7f_A YRRB protein; TPR, prot 86.4 6.3 0.00022 40.9 12.5 95 1070-1195 128-222 (243)
35 3as5_A MAMA; tetratricopeptide 86.4 15 0.00052 35.9 14.7 132 966-1195 42-173 (186)
36 2gw1_A Mitochondrial precursor 85.9 12 0.00042 43.4 15.9 96 1069-1195 306-401 (514)
37 1qqe_A Vesicular transport pro 84.9 9.7 0.00033 42.5 14.0 106 1071-1195 81-187 (292)
38 1hz4_A MALT regulatory protein 84.3 6.8 0.00023 44.3 12.5 118 963-1140 90-207 (373)
39 4eqf_A PEX5-related protein; a 84.0 4.1 0.00014 45.7 10.5 96 1069-1195 215-310 (365)
40 2q7f_A YRRB protein; TPR, prot 83.5 6.5 0.00022 40.8 11.0 132 966-1195 57-188 (243)
41 2vq2_A PILW, putative fimbrial 83.2 10 0.00036 38.5 12.2 30 966-995 42-71 (225)
42 2ifu_A Gamma-SNAP; membrane fu 82.8 9.2 0.00032 43.0 12.7 73 1067-1140 116-188 (307)
43 4i17_A Hypothetical protein; T 81.5 9.6 0.00033 40.1 11.6 139 967-1195 8-146 (228)
44 4abn_A Tetratricopeptide repea 81.1 2.5 8.4E-05 51.2 7.8 140 965-1195 101-250 (474)
45 2fo7_A Synthetic consensus TPR 80.4 21 0.00073 32.7 12.2 131 967-1195 2-132 (136)
46 3fp2_A TPR repeat-containing p 79.9 2 6.9E-05 50.5 6.3 190 942-1196 219-408 (537)
47 3qky_A Outer membrane assembly 79.7 13 0.00046 40.0 12.2 172 942-1197 32-226 (261)
48 2qfc_A PLCR protein; TPR, HTH, 79.4 8.3 0.00028 42.8 10.7 112 1066-1195 114-225 (293)
49 2vq2_A PILW, putative fimbrial 78.8 12 0.00042 38.0 10.9 168 966-1195 8-176 (225)
50 1hz4_A MALT regulatory protein 78.3 6.8 0.00023 44.3 9.7 153 965-1196 13-165 (373)
51 3u3w_A Transcriptional activat 78.0 13 0.00045 41.2 11.8 120 963-1142 152-272 (293)
52 1hh8_A P67PHOX, NCF-2, neutrop 77.7 11 0.00036 38.9 10.2 104 966-1136 37-150 (213)
53 2lni_A Stress-induced-phosphop 77.5 13 0.00045 34.6 10.0 106 958-1136 8-113 (133)
54 1elr_A TPR2A-domain of HOP; HO 77.2 11 0.00038 34.8 9.3 104 966-1136 4-108 (131)
55 1a17_A Serine/threonine protei 76.8 22 0.00075 34.6 11.7 102 963-1137 10-111 (166)
56 1qqe_A Vesicular transport pro 76.3 13 0.00043 41.6 11.1 115 964-1139 75-190 (292)
57 2vyi_A SGTA protein; chaperone 74.9 32 0.0011 31.6 11.7 98 966-1136 12-109 (131)
58 2y4t_A DNAJ homolog subfamily 74.5 23 0.00077 40.7 12.8 101 1068-1195 95-206 (450)
59 3as5_A MAMA; tetratricopeptide 74.3 30 0.001 33.8 12.0 103 966-1141 76-178 (186)
60 1w3b_A UDP-N-acetylglucosamine 73.9 7.1 0.00024 44.3 8.4 93 1071-1194 275-367 (388)
61 3q49_B STIP1 homology and U bo 72.9 26 0.00089 33.3 10.9 101 966-1139 9-109 (137)
62 3sz7_A HSC70 cochaperone (SGT) 72.5 15 0.00053 36.8 9.6 104 965-1141 10-113 (164)
63 3ieg_A DNAJ homolog subfamily 72.5 60 0.0021 35.3 14.9 101 1070-1195 74-183 (359)
64 4eqf_A PEX5-related protein; a 72.2 11 0.00038 42.2 9.4 102 966-1140 213-314 (365)
65 3u4t_A TPR repeat-containing p 72.2 17 0.00059 38.5 10.4 133 968-1195 5-137 (272)
66 3u3w_A Transcriptional activat 72.1 15 0.0005 40.8 10.2 112 1066-1195 114-225 (293)
67 4gyw_A UDP-N-acetylglucosamine 70.5 13 0.00044 48.3 10.6 30 967-996 10-39 (723)
68 4b4t_Q 26S proteasome regulato 70.4 20 0.00068 41.1 11.1 211 946-1196 25-246 (434)
69 1xnf_A Lipoprotein NLPI; TPR, 69.9 25 0.00087 37.1 11.0 121 941-1137 21-141 (275)
70 2vsy_A XCC0866; transferase, g 69.7 27 0.00093 42.6 12.7 135 966-1195 23-157 (568)
71 2ifu_A Gamma-SNAP; membrane fu 69.1 13 0.00046 41.7 9.1 105 1071-1195 40-144 (307)
72 4gcn_A Protein STI-1; structur 68.5 29 0.001 34.1 10.4 102 1069-1194 10-111 (127)
73 3qww_A SET and MYND domain-con 67.9 16 0.00056 44.6 10.2 121 1059-1196 287-412 (433)
74 1na0_A Designed protein CTPR3; 67.3 30 0.001 31.5 9.6 98 966-1136 9-106 (125)
75 2kck_A TPR repeat; tetratricop 66.7 10 0.00035 34.1 6.3 97 967-1134 7-104 (112)
76 2gw1_A Mitochondrial precursor 66.6 18 0.00063 41.9 9.9 137 967-1195 339-478 (514)
77 1fch_A Peroxisomal targeting s 66.4 35 0.0012 37.9 11.7 145 965-1196 216-360 (368)
78 2ho1_A Type 4 fimbrial biogene 65.3 46 0.0016 34.9 11.8 99 966-1137 141-239 (252)
79 2lni_A Stress-induced-phosphop 65.0 22 0.00074 33.2 8.3 97 1068-1195 17-113 (133)
80 3upv_A Heat shock protein STI1 64.4 35 0.0012 32.5 9.8 99 966-1137 4-102 (126)
81 1elr_A TPR2A-domain of HOP; HO 64.0 37 0.0013 31.2 9.7 104 1068-1195 5-108 (131)
82 1elw_A TPR1-domain of HOP; HOP 63.6 26 0.0009 31.6 8.4 97 1068-1195 5-101 (118)
83 1ouv_A Conserved hypothetical 63.2 41 0.0014 36.3 11.2 98 1067-1195 110-215 (273)
84 1w3b_A UDP-N-acetylglucosamine 62.5 41 0.0014 38.1 11.5 30 966-995 169-198 (388)
85 3n71_A Histone lysine methyltr 61.6 22 0.00075 44.3 9.8 112 969-1140 312-426 (490)
86 2vgx_A Chaperone SYCD; alterna 61.4 40 0.0014 34.1 10.1 101 967-1140 22-122 (148)
87 1a17_A Serine/threonine protei 60.5 26 0.00091 34.0 8.3 98 1067-1195 13-110 (166)
88 3q49_B STIP1 homology and U bo 59.8 28 0.00096 33.1 8.2 97 1068-1195 10-106 (137)
89 3sz7_A HSC70 cochaperone (SGT) 59.5 26 0.00089 35.1 8.3 98 1067-1195 11-108 (164)
90 2fo7_A Synthetic consensus TPR 59.1 1.1E+02 0.0036 27.9 12.9 98 966-1136 35-132 (136)
91 3cv0_A Peroxisome targeting si 58.8 82 0.0028 34.0 12.6 162 942-1196 155-316 (327)
92 2pl2_A Hypothetical conserved 58.8 33 0.0011 36.5 9.4 155 886-1136 15-180 (217)
93 1elw_A TPR1-domain of HOP; HOP 58.8 68 0.0023 28.9 10.2 98 966-1136 4-101 (118)
94 3upv_A Heat shock protein STI1 58.4 32 0.0011 32.7 8.3 97 1068-1195 5-101 (126)
95 1hxi_A PEX5, peroxisome target 58.1 46 0.0016 32.5 9.6 95 969-1136 20-114 (121)
96 2dba_A Smooth muscle cell asso 57.1 44 0.0015 31.8 9.1 102 965-1136 27-128 (148)
97 2xcb_A PCRH, regulatory protei 55.9 73 0.0025 31.3 10.7 102 967-1141 19-120 (142)
98 2c2l_A CHIP, carboxy terminus 55.6 96 0.0033 34.6 12.8 102 966-1140 4-105 (281)
99 2vyi_A SGTA protein; chaperone 54.9 43 0.0015 30.7 8.3 99 1066-1195 11-109 (131)
100 4g1t_A Interferon-induced prot 53.4 1.9E+02 0.0067 33.4 15.3 139 935-1136 25-167 (472)
101 4gyw_A UDP-N-acetylglucosamine 52.3 29 0.001 45.1 9.0 67 1068-1140 112-178 (723)
102 1na0_A Designed protein CTPR3; 51.5 53 0.0018 29.8 8.3 97 1068-1195 10-106 (125)
103 1xnf_A Lipoprotein NLPI; TPR, 50.1 39 0.0013 35.7 8.1 98 1067-1195 43-140 (275)
104 3gyz_A Chaperone protein IPGC; 49.8 41 0.0014 34.9 8.1 101 1065-1196 34-134 (151)
105 4ga2_A E3 SUMO-protein ligase 48.9 9.8 0.00034 38.5 3.2 59 1071-1135 35-93 (150)
106 4i17_A Hypothetical protein; T 48.6 65 0.0022 33.7 9.5 101 967-1136 43-146 (228)
107 2vgx_A Chaperone SYCD; alterna 48.5 43 0.0015 33.9 7.8 100 1066-1196 20-119 (148)
108 3n71_A Histone lysine methyltr 47.0 85 0.0029 39.1 11.6 118 965-1142 350-470 (490)
109 2xcb_A PCRH, regulatory protei 46.8 62 0.0021 31.8 8.5 99 1066-1195 17-115 (142)
110 4gco_A Protein STI-1; structur 46.5 86 0.0029 30.8 9.5 97 967-1136 14-110 (126)
111 2fbn_A 70 kDa peptidylprolyl i 46.3 64 0.0022 33.3 8.9 106 1063-1195 34-151 (198)
112 2vsy_A XCC0866; transferase, g 44.4 1.1E+02 0.0037 37.4 11.9 118 942-1142 40-160 (568)
113 1cvr_A Gingipain R, RGPB; casp 43.7 45 0.0015 41.3 8.3 75 1975-2053 192-281 (435)
114 2dba_A Smooth muscle cell asso 43.4 68 0.0023 30.5 8.0 101 1067-1195 28-128 (148)
115 1hh8_A P67PHOX, NCF-2, neutrop 43.3 57 0.0019 33.5 7.9 106 1069-1195 39-150 (213)
116 2e2e_A Formate-dependent nitri 43.2 1.3E+02 0.0046 30.1 10.5 98 967-1137 45-145 (177)
117 3rkv_A Putative peptidylprolyl 43.1 97 0.0033 30.9 9.4 123 962-1139 7-129 (162)
118 4b4t_Q 26S proteasome regulato 42.9 35 0.0012 39.1 6.9 106 1073-1197 101-206 (434)
119 3ma5_A Tetratricopeptide repea 42.2 41 0.0014 31.6 6.1 66 1068-1139 8-73 (100)
120 2fbn_A 70 kDa peptidylprolyl i 41.9 1.6E+02 0.0055 30.3 11.1 112 967-1136 39-151 (198)
121 3urz_A Uncharacterized protein 41.1 36 0.0012 36.0 6.2 103 1067-1194 4-116 (208)
122 1p5q_A FKBP52, FK506-binding p 40.5 99 0.0034 35.6 10.2 148 966-1197 147-296 (336)
123 1ouv_A Conserved hypothetical 40.3 63 0.0021 34.9 8.0 98 1067-1195 6-107 (273)
124 1na3_A Designed protein CTPR2; 40.2 67 0.0023 28.1 6.9 63 1068-1136 10-72 (91)
125 4gcn_A Protein STI-1; structur 39.8 2.4E+02 0.0081 27.6 11.4 103 965-1135 7-111 (127)
126 4abn_A Tetratricopeptide repea 39.7 1.4E+02 0.0048 36.1 11.7 134 966-1195 137-287 (474)
127 1ihg_A Cyclophilin 40; ppiase 39.0 2.4E+02 0.0081 33.3 13.2 114 967-1137 224-337 (370)
128 3qhp_A Type 1 capsular polysac 38.0 43 0.0015 33.8 5.9 39 2031-2069 85-137 (166)
129 3gyz_A Chaperone protein IPGC; 37.8 1E+02 0.0035 31.9 8.8 97 968-1137 38-134 (151)
130 4g1t_A Interferon-induced prot 37.4 60 0.002 37.7 7.7 107 1073-1195 57-167 (472)
131 2pl2_A Hypothetical conserved 37.2 75 0.0026 33.8 7.9 97 967-1136 6-113 (217)
132 2kat_A Uncharacterized protein 34.4 76 0.0026 29.8 6.7 66 1069-1140 21-86 (115)
133 3qwp_A SET and MYND domain-con 34.1 1.5E+02 0.005 36.2 10.6 100 1081-1197 301-402 (429)
134 3rjv_A Putative SEL1 repeat pr 32.9 90 0.0031 33.2 7.7 27 968-994 20-46 (212)
135 2xm6_A Protein corresponding t 32.8 78 0.0027 37.8 7.9 97 1068-1195 76-180 (490)
136 4gco_A Protein STI-1; structur 32.5 1.6E+02 0.0056 28.8 8.9 99 1066-1195 12-110 (126)
137 3k9i_A BH0479 protein; putativ 32.2 1.1E+02 0.0037 29.0 7.4 66 1066-1137 26-91 (117)
138 3mkr_A Coatomer subunit epsilo 31.9 70 0.0024 36.1 6.9 56 1070-1136 104-159 (291)
139 2c2l_A CHIP, carboxy terminus 31.3 67 0.0023 35.9 6.6 96 1068-1194 5-100 (281)
140 2e2e_A Formate-dependent nitri 30.9 1.3E+02 0.0044 30.2 8.0 96 1069-1195 46-144 (177)
141 3ma5_A Tetratricopeptide repea 30.8 48 0.0016 31.1 4.6 60 1111-1195 11-70 (100)
142 2l6j_A TPR repeat-containing p 30.7 90 0.0031 28.3 6.3 63 1068-1136 5-67 (111)
143 1wao_1 Serine/threonine protei 30.4 57 0.002 39.8 6.3 96 968-1136 8-103 (477)
144 2xev_A YBGF; tetratricopeptide 29.3 1.3E+02 0.0044 28.1 7.3 103 1069-1196 4-106 (129)
145 1p5q_A FKBP52, FK506-binding p 28.9 1.2E+02 0.004 35.0 8.2 105 1066-1195 146-259 (336)
146 3vtx_A MAMA; tetratricopeptide 28.5 88 0.003 31.4 6.4 63 1068-1136 108-170 (184)
147 3qou_A Protein YBBN; thioredox 28.1 2E+02 0.007 32.0 9.8 166 967-1195 118-284 (287)
148 2xev_A YBGF; tetratricopeptide 27.4 1.4E+02 0.0049 27.9 7.2 103 968-1137 4-106 (129)
149 1na3_A Designed protein CTPR2; 25.0 80 0.0027 27.7 4.7 60 1111-1195 13-72 (91)
150 2v5f_A Prolyl 4-hydroxylase su 25.0 1E+02 0.0035 29.5 5.9 65 1112-1194 10-74 (104)
151 1hxi_A PEX5, peroxisome target 25.0 1.6E+02 0.0056 28.5 7.4 94 1070-1194 20-113 (121)
152 2l6j_A TPR repeat-containing p 24.4 77 0.0026 28.8 4.6 59 1112-1195 9-67 (111)
153 3qwp_A SET and MYND domain-con 21.8 1.3E+02 0.0045 36.6 7.2 75 1065-1140 327-404 (429)
154 2kc7_A BFR218_protein; tetratr 21.5 1.8E+02 0.0061 26.3 6.4 63 1070-1137 3-65 (99)
155 3rjv_A Putative SEL1 repeat pr 21.4 1.8E+02 0.0062 30.9 7.4 98 1066-1195 17-118 (212)
156 2kat_A Uncharacterized protein 21.1 1.7E+02 0.0059 27.3 6.4 66 966-1098 19-84 (115)
157 4ga2_A E3 SUMO-protein ligase 20.6 1.6E+02 0.0054 29.6 6.4 59 1071-1135 69-128 (150)
No 1
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.83 E-value=0.08 Score=59.30 Aligned_cols=329 Identities=16% Similarity=0.022 Sum_probs=189.7
Q ss_pred hhhhHhhhccchhhhcCcCCchhhHhhhHHHHHHhhcccCCCCCCcccchhhhHHHHHHhhhhccccCCchHHHHHHHHH
Q 000110 714 QRSGILLRKGRALRARGTEGLKDCIQCLSEAICVMNDISGDMSQHETLHCHQLAVAYCLRALCTQEAEPNSKQVIEDIGA 793 (2163)
Q Consensus 714 ersriL~~Kgr~~R~~G~~~l~~ci~~lseai~~l~~~~~~~~~~~~~~~~~lavayclra~C~qEae~~s~~~~~d~~~ 793 (2163)
..+..|..+|..+...| +....+++|.+|+.+- + +. ...++.+|...|.+-... -.-++-.+....
T Consensus 7 ~~~~~l~~~g~~~~~~g--~~~~A~~~~~~al~~~------~--~~---~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 72 (406)
T 3sf4_A 7 ASCLELALEGERLCKSG--DCRAGVSFFEAAVQVG------T--ED---LKTLSAIYSQLGNAYFYL-HDYAKALEYHHH 72 (406)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC------C--SC---HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhcC------c--cc---HHHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 34567778888877766 5667888888888762 0 11 122344455555444332 233444555555
Q ss_pred HHHhhHhccccCcccccccccchHHHHHHHHHHHhhccchhhHHhHHHHHHHHhhcccCCChhhHHHHHhhccccccccc
Q 000110 794 ALNLWLSVSICFESERCNMVSENTMLLLYNVVDLLSLKGFIEFHNNIYKLMLRLFKCKNVPLEKYLSILWESRRLSHALC 873 (2163)
Q Consensus 794 al~lw~~i~~~~~g~~~~~~~~~~~~ll~n~vDLl~lKg~~e~~~~~~kl~i~l~~~k~~~~ek~ls~lWe~rrlsH~lC 873 (2163)
|+.+...+. + .......++++..+....|-.+-=...|+-.+.+....+-+ ......|
T Consensus 73 al~~~~~~~-----~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~---------- 130 (406)
T 3sf4_A 73 DLTLARTIG-----D-----QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--VGEARAL---------- 130 (406)
T ss_dssp HHHHHHHTT-----C-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHH----------
T ss_pred HHHHHHhcc-----c-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--cchHHHH----------
Confidence 665555441 1 13344567778888777776665555555555555433221 1111122
Q ss_pred ccccchHHHHHhHHHhcc--------------------ccchhhhhhhhccC-----CcccchhhhhhhhhhhccCCCCc
Q 000110 874 ISPVNDAFLVNLAEQCGE--------------------LSKSIEFWMGCLQG-----SQPLLVGFQQSLLFLFANSSHGC 928 (2163)
Q Consensus 874 ~sP~~~~fi~~~~~~~g~--------------------~~~~~~fw~~~~~~-----~~~~~v~~q~~~~~l~~~~~~~~ 928 (2163)
..+..+-...|+ ..+++.++...+.- .++.......+...++..
T Consensus 131 ------~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----- 199 (406)
T 3sf4_A 131 ------YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----- 199 (406)
T ss_dssp ------HHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred ------HHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-----
Confidence 112222333444 44555554443321 122222222222222211
Q ss_pred cccCCCCcccccHHhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceee
Q 000110 929 YISKSSVQPCITIHDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSV 1008 (2163)
Q Consensus 929 ~~~~~~f~~~~~~~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~ 1008 (2163)
.+-|..- +.- -+.|+++....+ .....+..|+.|+.-+...|+..+|+.+..+++++..+.
T Consensus 200 ---~g~~~~A--~~~-~~~al~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------- 260 (406)
T 3sf4_A 200 ---LGNFRDA--VIA-HEQRLLIAKEFG----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--------- 260 (406)
T ss_dssp ---HTBHHHH--HHH-HHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------
T ss_pred ---ccCHHHH--HHH-HHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC---------
Confidence 1101110 111 122333333322 123446678888888888999999998888888664432
Q ss_pred ccccccccccccccccccCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHH
Q 000110 1009 ENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEA 1088 (2163)
Q Consensus 1009 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~ 1088 (2163)
-.++. ..+.....|.++...|+-++|+.
T Consensus 261 ------------------------------------------------~~~~~----~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 261 ------------------------------------------------KDRAV----EAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp ------------------------------------------------TCHHH----HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------------------------------cCchH----HHHHHHHHHHHHHHhCcHHHHHH
Confidence 00111 23344578999999999999999
Q ss_pred HhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhccccc
Q 000110 1089 FLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSY 1168 (2163)
Q Consensus 1089 ~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~ 1168 (2163)
++.....+....+-+......-..||.+|.+.+.++.|..-++.|-++..+..... ..+.+...+|++....
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~l~~~~~~~ 360 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS--------GELTARLNLSDLQMVL 360 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCc--------chhHHHHHHHHHHHHh
Confidence 99998888777776777777777899999999999999999999999987765332 3455556666665554
No 2
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.63 E-value=0.54 Score=53.43 Aligned_cols=154 Identities=15% Similarity=0.057 Sum_probs=117.5
Q ss_pred eehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeec
Q 000110 964 LVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVW 1043 (2163)
Q Consensus 964 ~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w 1043 (2163)
..+..|+.|+.-+...|+..+|+.+..+++++..+.-.. .
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~--------------------- 260 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR-------------------A--------------------- 260 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------H---------------------
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc-------------------H---------------------
Confidence 346688999999999999999999999999876542000 0
Q ss_pred cCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhch
Q 000110 1044 SFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLW 1123 (2163)
Q Consensus 1044 ~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~W 1123 (2163)
.........|.++...|+-++|+.++.....+....+-+......-..||.+|.+.+.+
T Consensus 261 ---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 261 ---------------------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 00234567899999999999999999988888776666666666667899999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhccC
Q 000110 1124 DQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKLN 1197 (2163)
Q Consensus 1124 d~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKln 1197 (2163)
+.|..-++.|.++..+... ......+...+|.+.... ++...|..+|+.|++-..
T Consensus 320 ~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 320 NTAIEYHNRHLAIAQELGD--------RIGEARACWSLGNAHSAI-----------GGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHCCC--------hHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHh
Confidence 9999999999998877542 123455666677776655 445678999998876543
No 3
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.39 E-value=0.045 Score=52.48 Aligned_cols=152 Identities=13% Similarity=0.001 Sum_probs=115.6
Q ss_pred eehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeec
Q 000110 964 LVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVW 1043 (2163)
Q Consensus 964 ~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w 1043 (2163)
..+..|+.|+.-+...|+..+|+.+..+++.+-.+.-
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~------------------------------------------- 43 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG------------------------------------------- 43 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-------------------------------------------
Confidence 4567899999999999999999999999998754310
Q ss_pred cCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhch
Q 000110 1044 SFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLW 1123 (2163)
Q Consensus 1044 ~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~W 1123 (2163)
.|+.. .....+.|.++-..|+-++|..++.....+....+-|...+..-..+|.+|...+.+
T Consensus 44 --------------~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 105 (164)
T 3ro3_A 44 --------------DKAAE----RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 105 (164)
T ss_dssp --------------CHHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred --------------CchHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhH
Confidence 00000 245667899999999999999999999888877777777677778899999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1124 DQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1124 d~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
+.|..-++.|-++..+.... ...+.....+|.+.... ++...|...|+.|++-
T Consensus 106 ~~A~~~~~~a~~~~~~~~~~--------~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 106 EKAIDYHLKHLAIAQELKDR--------IGEGRACWSLGNAYTAL-----------GNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccch--------HhHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHH
Confidence 99999999998887665432 22344455666665554 3456788888888754
No 4
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.60 E-value=0.22 Score=50.66 Aligned_cols=152 Identities=15% Similarity=0.059 Sum_probs=113.6
Q ss_pred ehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeecc
Q 000110 965 VGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWS 1044 (2163)
Q Consensus 965 a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~ 1044 (2163)
.+..++.|+.-....|+..+|+.+..+|+.+-.++ . .
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------------~------~--------------- 61 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS----------------------G------D--------------- 61 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----------------------C------C---------------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc----------------------C------C---------------
Confidence 47789999999999999999999999998875321 0 0
Q ss_pred CCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccC-CcchhhHHHhhhhHHHHhhhch
Q 000110 1045 FDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQS-LPQFIVAFSSILGKLYRKKQLW 1123 (2163)
Q Consensus 1045 ~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~-Lp~f~v~FsS~LG~ly~kk~~W 1123 (2163)
|.. ........|.++...|+-.+|+.++.....+....+ -|...+..-..||.+|...+.+
T Consensus 62 --------------~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 123 (203)
T 3gw4_A 62 --------------HTA----EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123 (203)
T ss_dssp --------------HHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCH
T ss_pred --------------cHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCH
Confidence 111 123456789999999999999999999888877655 4545666677899999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhcc
Q 000110 1124 DQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1124 d~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKl 1196 (2163)
+.|+.-++.|-++........ ..+.+...+|.+.... ++...|...|+.|++-.
T Consensus 124 ~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 124 AGARQEYEKSLVYAQQADDQV--------AIACAFRGLGDLAQQE-----------KNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchH--------HHHHHHHHHHHHHHHC-----------cCHHHHHHHHHHHHHHH
Confidence 999999999998876554322 2344456677766655 34456777787776543
No 5
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.29 E-value=0.15 Score=58.63 Aligned_cols=166 Identities=12% Similarity=0.010 Sum_probs=124.8
Q ss_pred HHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeecccccccccccccccccc
Q 000110 947 AASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLH 1026 (2163)
Q Consensus 947 aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~ 1026 (2163)
.|+++...++.+ ...+..||.|+.-....|+..+|+.|..+|+.+-.+.-.
T Consensus 126 ~al~~~~~~~~~----~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------------------------- 176 (378)
T 3q15_A 126 EAEKELPFVSDD----IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL------------------------- 176 (378)
T ss_dssp HHHTTGGGCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHhhCCCh----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC-------------------------
Confidence 355555554432 456778999999999999999999999999987543111
Q ss_pred CCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchh
Q 000110 1027 SSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFI 1106 (2163)
Q Consensus 1027 ~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~ 1106 (2163)
.+.. ........|.++...|+=++|+.++.....+....+-+...
T Consensus 177 -------------------------------~~~~----~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 177 -------------------------------YSIR----TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp -------------------------------CHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------------------------chhh----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 0111 23345678999999999999999999988888777777777
Q ss_pred hHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHH
Q 000110 1107 VAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAE 1186 (2163)
Q Consensus 1107 v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~ 1186 (2163)
...-.-||.+|.+++.+|.|..-++.|-++......... +.....+|.+.... ++...|+
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~la~~~~~~-----------g~~~~A~ 281 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL---------PKVLFGLSWTLCKA-----------GQTQKAF 281 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH---------HHHHHHHHHHHHHT-----------TCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH---------HHHHHHHHHHHHHC-----------CCHHHHH
Confidence 667778999999999999999999999998876543321 34455666665554 3456799
Q ss_pred HHHHHHHhcc
Q 000110 1187 KLYKSALDKL 1196 (2163)
Q Consensus 1187 ~~Y~sAldKl 1196 (2163)
..|+.|++-.
T Consensus 282 ~~~~~al~~~ 291 (378)
T 3q15_A 282 QFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 6
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.20 E-value=0.16 Score=56.89 Aligned_cols=154 Identities=14% Similarity=0.007 Sum_probs=118.6
Q ss_pred eeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceee
Q 000110 963 FLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEV 1042 (2163)
Q Consensus 963 f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~ 1042 (2163)
...+..|+.|+.-+...|+..+|+.+..+|..+..+.- +
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------~---------------------- 222 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------------------D---------------------- 222 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT-------------------C----------------------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC-------------------C----------------------
Confidence 34567899999999999999999999999988754310 0
Q ss_pred ccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhc
Q 000110 1043 WSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQL 1122 (2163)
Q Consensus 1043 w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~ 1122 (2163)
|.. ........|.++...|+-++|+.++.....+....+-+...+..-..||.+|.+.+.
T Consensus 223 ----------------~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 282 (406)
T 3sf4_A 223 ----------------KAA----ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 282 (406)
T ss_dssp ----------------HHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------------cHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc
Confidence 000 024456789999999999999999999988887777777777777889999999999
Q ss_pred hHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhcc
Q 000110 1123 WDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1123 Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKl 1196 (2163)
|+.|..-++.|-++..+.... ...+.+...+|.+.... ++...|..+|+.|++-.
T Consensus 283 ~~~A~~~~~~a~~~~~~~~~~--------~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 283 YEKAIDYHLKHLAIAQELNDR--------IGEGRACWSLGNAYTAL-----------GNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCc--------HHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHH
Confidence 999999999999988775431 22345556677766554 45668999999987654
No 7
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.82 E-value=0.25 Score=47.31 Aligned_cols=117 Identities=20% Similarity=0.023 Sum_probs=95.0
Q ss_pred eeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceee
Q 000110 963 FLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEV 1042 (2163)
Q Consensus 963 f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~ 1042 (2163)
...+..|+.++.-+...|+..+|+.+.++|+++-.+.-
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------------------------------------------ 83 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK------------------------------------------ 83 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------------------------------------------
Confidence 34567899999999999999999999999997654320
Q ss_pred ccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhc
Q 000110 1043 WSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQL 1122 (2163)
Q Consensus 1043 w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~ 1122 (2163)
.|... .......|.++...|+=++|+.++.....+....+-|......-..||.+|.+.+.
T Consensus 84 ---------------~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 84 ---------------DRAVE----AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp ---------------CHHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------CcHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC
Confidence 01112 23345789999999999999999999988877777777777777889999999999
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 000110 1123 WDQAEKELKNAKQILVEK 1140 (2163)
Q Consensus 1123 Wd~Ae~EL~~Ak~~l~~~ 1140 (2163)
++.|..-++.|.++..+.
T Consensus 145 ~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 145 HDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998887543
No 8
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=94.79 E-value=0.35 Score=51.88 Aligned_cols=152 Identities=14% Similarity=0.015 Sum_probs=117.6
Q ss_pred eehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeec
Q 000110 964 LVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVW 1043 (2163)
Q Consensus 964 ~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w 1043 (2163)
..+..|+.++.-+...|+..+|+.+..++.++..+.- +
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------~----------------------- 218 (338)
T 3ro2_A 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------------------D----------------------- 218 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-------------------C-----------------------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-------------------C-----------------------
Confidence 4467889999999999999999999999987644310 0
Q ss_pred cCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhch
Q 000110 1044 SFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLW 1123 (2163)
Q Consensus 1044 ~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~W 1123 (2163)
|+. ........|.++...|+-++|+.++.....+....+-+...+..-..||.+|.+.+.+
T Consensus 219 ---------------~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 219 ---------------KAA----ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp ---------------HHH----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------hHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 111 1234567899999999999999999999888877777777777778899999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1124 DQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1124 d~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
+.|..-++.|.++..+.... .....+...+|++.... ++...|...|+.|++-
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~--------~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDR--------IGEGRACWSLGNAYTAL-----------GNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCH--------HHHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCc--------HHHHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHH
Confidence 99999999999887765432 23345566777776655 4566899999998764
No 9
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=94.53 E-value=0.33 Score=55.17 Aligned_cols=152 Identities=18% Similarity=0.073 Sum_probs=115.8
Q ss_pred ehhHHHHhHHHHHhcch-----------------HHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccC
Q 000110 965 VGYLYYDLCERLIANGR-----------------LLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHS 1027 (2163)
Q Consensus 965 a~~LyydL~erl~~~G~-----------------l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~ 1027 (2163)
.+..|+.|+.-+...|+ +.+|+.+..+++++..++-
T Consensus 165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~--------------------------- 217 (411)
T 4a1s_A 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG--------------------------- 217 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT---------------------------
T ss_pred HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC---------------------------
Confidence 35678889999999999 9999999999887755431
Q ss_pred CCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhh
Q 000110 1028 SPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIV 1107 (2163)
Q Consensus 1028 ~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v 1107 (2163)
.+ ..........|.++...|+-++|+.++.....+....+-+...+
T Consensus 218 ------------------------------~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 218 ------------------------------DR----GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp ------------------------------CH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ------------------------------CH----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 01 11234556789999999999999999999888877766666666
Q ss_pred HHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHH
Q 000110 1108 AFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEK 1187 (2163)
Q Consensus 1108 ~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~ 1187 (2163)
..-..||.+|.+++.|+.|..-++.|.++..+.... ...+.+...+|.+.... ++...|+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~la~~~~~~-----------g~~~~A~~ 324 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER--------EVEAQSCYSLGNTYTLL-----------HEFNTAIE 324 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHT-----------TCHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHc-----------CCHHHHHH
Confidence 666789999999999999999999999988765322 23355666777776655 34667888
Q ss_pred HHHHHHhcc
Q 000110 1188 LYKSALDKL 1196 (2163)
Q Consensus 1188 ~Y~sAldKl 1196 (2163)
.|+.|++-.
T Consensus 325 ~~~~al~~~ 333 (411)
T 4a1s_A 325 YHNRHLAIA 333 (411)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887643
No 10
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=94.28 E-value=0.67 Score=48.85 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=90.8
Q ss_pred eehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeec
Q 000110 964 LVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVW 1043 (2163)
Q Consensus 964 ~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w 1043 (2163)
..+..|+.|+.-+...|++.+|+.+-.+|+++..+.....
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------------------- 122 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF---------------------------------------- 122 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT----------------------------------------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC----------------------------------------
Confidence 3466899999999999999999999999998876542100
Q ss_pred cCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcccccccc--CCcchhhHHHhhhhHHHHhhh
Q 000110 1044 SFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQ--SLPQFIVAFSSILGKLYRKKQ 1121 (2163)
Q Consensus 1044 ~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q--~Lp~f~v~FsS~LG~ly~kk~ 1121 (2163)
+| ...+.....|.++...|+=++|+.++.....+.... .-+...+..-..||.+|.+++
T Consensus 123 --------------~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 123 --------------HP-----DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp --------------CH-----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred --------------Ch-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 01 124566788999999999999999999888773222 113334445568999999999
Q ss_pred chHHHHHHHHHHHHHHHhc
Q 000110 1122 LWDQAEKELKNAKQILVEK 1140 (2163)
Q Consensus 1122 ~Wd~Ae~EL~~Ak~~l~~~ 1140 (2163)
.|+.|..-++.|-++..+.
T Consensus 184 ~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999998886553
No 11
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.11 E-value=0.66 Score=49.92 Aligned_cols=116 Identities=18% Similarity=0.143 Sum_probs=90.1
Q ss_pred ehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeecc
Q 000110 965 VGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWS 1044 (2163)
Q Consensus 965 a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~ 1044 (2163)
.+..|+.|+.-+...|+..+|+.+..++.++..+++...
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----------------------------------------- 148 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD----------------------------------------- 148 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-----------------------------------------
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-----------------------------------------
Confidence 456789999999999999999999999998877653100
Q ss_pred CCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcccccccc--CCcchhhHHHhhhhHHHHhhhc
Q 000110 1045 FDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQ--SLPQFIVAFSSILGKLYRKKQL 1122 (2163)
Q Consensus 1045 ~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q--~Lp~f~v~FsS~LG~ly~kk~~ 1122 (2163)
.| .........|.++...|+-.+|+.++.-...+.... +-+...+..-..||.+|.+.+.
T Consensus 149 -------------~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 210 (311)
T 3nf1_A 149 -------------HP-----DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK 210 (311)
T ss_dssp -------------CH-----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred -------------Ch-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC
Confidence 01 124556678999999999999999998877663322 2244555666789999999999
Q ss_pred hHHHHHHHHHHHHHHHh
Q 000110 1123 WDQAEKELKNAKQILVE 1139 (2163)
Q Consensus 1123 Wd~Ae~EL~~Ak~~l~~ 1139 (2163)
+|.|..-++.|-++..+
T Consensus 211 ~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 211 FKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 12
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.01 E-value=0.36 Score=49.15 Aligned_cols=119 Identities=14% Similarity=0.012 Sum_probs=97.0
Q ss_pred eehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeec
Q 000110 964 LVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVW 1043 (2163)
Q Consensus 964 ~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w 1043 (2163)
..+..|+.|+.-+...|++.+|+.+..+|+++-.+. +
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------~------------------------ 100 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-------------------P------------------------ 100 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-------------------C------------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-------------------C------------------------
Confidence 356788999999999999999999999999875431 0
Q ss_pred cCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhch
Q 000110 1044 SFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLW 1123 (2163)
Q Consensus 1044 ~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~W 1123 (2163)
-.||... ......|.++-..|+-++|+.++..+..+....+-|...+..-..||.+|.+.+.|
T Consensus 101 -------------~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 101 -------------EDPLAAS----ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp -------------CCHHHHH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -------------ccHHHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 0122222 23456899999999999999999999998887777777777678899999999999
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 000110 1124 DQAEKELKNAKQILVEKSI 1142 (2163)
Q Consensus 1124 d~Ae~EL~~Ak~~l~~~~~ 1142 (2163)
+.|..-++.|-++..+...
T Consensus 164 ~~A~~~~~~al~~~~~~~~ 182 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAELED 182 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 9999999999998877654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.55 E-value=7.2 Score=42.56 Aligned_cols=206 Identities=12% Similarity=0.001 Sum_probs=129.5
Q ss_pred HhHHHhccccchhhhhhhhccCCcccchhhhhhhhhhhccCCCCccccCCCCcccccHHhHHHHHHHhhccCCCCCCcee
Q 000110 884 NLAEQCGELSKSIEFWMGCLQGSQPLLVGFQQSLLFLFANSSHGCYISKSSVQPCITIHDVKEAASELISSVPVTPRSVF 963 (2163)
Q Consensus 884 ~~~~~~g~~~~~~~fw~~~~~~~~~~~v~~q~~~~~l~~~~~~~~~~~~~~f~~~~~~~~v~~aA~~lis~~p~~~~s~f 963 (2163)
......|+..+++......++..|... ....+...++.. .+ + .++-.+...+.+...|.+
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~----~--~~~A~~~~~~~~~~~~~~----- 187 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCVWDA-ELRELRAECFIK--------EG----E--PRKAISDLKAASKLKSDN----- 187 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHH--------TT----C--HHHHHHHHHHHHTTCSCC-----
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHH--------CC----C--HHHHHHHHHHHHHhCCCC-----
Confidence 445567777778877777666555332 222222222221 11 1 233333334444444543
Q ss_pred eehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeec
Q 000110 964 LVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVW 1043 (2163)
Q Consensus 964 ~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w 1043 (2163)
...|+.|+.-+...|+..+|+.+.+++.++... + . .
T Consensus 188 --~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----------------~------~----------~---------- 223 (359)
T 3ieg_A 188 --TEAFYKISTLYYQLGDHELSLSEVRECLKLDQD----------------H------K----------R---------- 223 (359)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------------C------H----------H----------
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----------------c------h----------H----------
Confidence 257888888888899999999988888643200 0 0 0
Q ss_pred cCCCCCCCCccccCCcchhhHH--HHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhh
Q 000110 1044 SFDASSWNVDGCYLSPWNVLQC--YLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQ 1121 (2163)
Q Consensus 1044 ~~~~~~~~~~~~~lspW~vL~c--YlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~ 1121 (2163)
.|..+.- -++..+..|.++...|+-.||...+.....+. .+-|......-..+|.+|.+.+
T Consensus 224 ---------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 224 ---------------CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHcc
Confidence 1222111 25566777999999999999999998765544 3344444444557999999999
Q ss_pred chHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1122 LWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1122 ~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.++.|..-++.|-++-.+ ...+...+|++.... ++...|+..|+.|++.
T Consensus 287 ~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-----------g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 287 KPVEAIRICSEVLQMEPD--------------NVNALKDRAEAYLIE-----------EMYDEAIQDYEAAQEH 335 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcc--------------cHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhc
Confidence 999999999888765111 134566777776655 4567899999999864
No 14
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=93.42 E-value=0.53 Score=53.88 Aligned_cols=155 Identities=10% Similarity=0.027 Sum_probs=118.4
Q ss_pred ceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccce
Q 000110 961 SVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVAS 1040 (2163)
Q Consensus 961 s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~ 1040 (2163)
..++..|.||-++..+...|+..+|+.+.++|+++-.++ .
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~----------------------~------------------ 137 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV----------------------K------------------ 137 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC----------------------C------------------
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC----------------------C------------------
Confidence 345667888889999999999999999999998761100 0
Q ss_pred eeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCC-cchhhHHHhhhhHHHHh
Q 000110 1041 EVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSL-PQFIVAFSSILGKLYRK 1119 (2163)
Q Consensus 1041 ~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~L-p~f~v~FsS~LG~ly~k 1119 (2163)
.| ...-+.....|.++-..|+-.+|..++.-...+....+- +.-.+..-..||.+|..
T Consensus 138 -----------------~~----~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 196 (383)
T 3ulq_A 138 -----------------DR----IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD 196 (383)
T ss_dssp -----------------CH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH
T ss_pred -----------------CH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence 00 012344577899999999999999999988888766654 55556666789999999
Q ss_pred hhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1120 KQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1120 k~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.+.+|.|..-++.|-++..+.... ...+.+...+|.+.... ++...|+..|+.|++-
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~lg~~y~~~-----------g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQP--------QLMGRTLYNIGLCKNSQ-----------SQYEDAIPYFKRAIAV 253 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHH
Confidence 999999999999999988766422 23455667788877665 4567899999999874
No 15
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=93.12 E-value=1.2 Score=47.82 Aligned_cols=156 Identities=15% Similarity=0.029 Sum_probs=111.2
Q ss_pred ehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeecc
Q 000110 965 VGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWS 1044 (2163)
Q Consensus 965 a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~ 1044 (2163)
....|+.|+..+...|++.+|+.+..+++++-.+.... .
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------------------~---------------------- 64 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH-------------------D---------------------- 64 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCS-------------------S----------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC-------------------C----------------------
Confidence 35678899999999999999999999999876543210 0
Q ss_pred CCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcccccccc--CCcchhhHHHhhhhHHHHhhhc
Q 000110 1045 FDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQ--SLPQFIVAFSSILGKLYRKKQL 1122 (2163)
Q Consensus 1045 ~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q--~Lp~f~v~FsS~LG~ly~kk~~ 1122 (2163)
. ....+.....|.++-..|+-++|+.++.....+.... +-+...+..-..||.+|.+.+.
T Consensus 65 -------------~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 126 (311)
T 3nf1_A 65 -------------H-----PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 126 (311)
T ss_dssp -------------S-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred -------------C-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCc
Confidence 0 1123456778999999999999999998776664332 2234444555689999999999
Q ss_pred hHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhcc
Q 000110 1123 WDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1123 Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKl 1196 (2163)
++.|..-++.|-++....... .-...+.+...+|.+.... ++...|+..|+.|++..
T Consensus 127 ~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 127 YKEAEPLCKRALEIREKVLGK------DHPDVAKQLNNLALLCQNQ-----------GKYEEVEYYYQRALEIY 183 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHHTT-----------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHH
Confidence 999999999998887543110 0112344556667665544 45678999999998763
No 16
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=92.38 E-value=2.9 Score=50.11 Aligned_cols=101 Identities=14% Similarity=0.069 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcChhhHHHHhhhccccccccC-CcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccc
Q 000110 1070 VLQVGIIHELVGNGVEAEAFLLWGKSISCTQS-LPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLK 1148 (2163)
Q Consensus 1070 ~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~-Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~ 1148 (2163)
....|.++...|+-+||+.++.....+.-..+ -|-..+..-..||.+|++.+.+|.|++-++.|-++-.+
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------- 548 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN--------- 548 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC---------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------
Confidence 34578888889999999999986655432211 23333445567999999999999999988887665211
Q ss_pred cchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1149 CRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1149 C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
...+...+|.+.... ++...|+..|+.+++.
T Consensus 549 -----~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 549 -----DANVHTAIALVYLHK-----------KIPGLAITHLHESLAI 579 (597)
T ss_dssp -----CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred -----ChHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhc
Confidence 235566777776655 4567899999999864
No 17
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=92.21 E-value=1.5 Score=50.29 Aligned_cols=165 Identities=11% Similarity=0.057 Sum_probs=121.2
Q ss_pred HHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeecccccccccccccccccc
Q 000110 947 AASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLH 1026 (2163)
Q Consensus 947 aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~ 1026 (2163)
.|+++....|.+ ...+..|+.|+.-....|+..+|+.|..+|+.+..+. ++
T Consensus 128 ~al~~~~~~~~~----~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-------------------~~------ 178 (383)
T 3ulq_A 128 KAESKLIFVKDR----IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-------------------EA------ 178 (383)
T ss_dssp HHHTTGGGCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-------------------ST------
T ss_pred HHHHHHhhCCCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------------------cc------
Confidence 455555554432 2356788999999999999999999999999875420 00
Q ss_pred CCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchh
Q 000110 1027 SSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFI 1106 (2163)
Q Consensus 1027 ~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~ 1106 (2163)
.+..+ .......|.++...|+=++|+.++.....+....+-+...
T Consensus 179 -------------------------------~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 179 -------------------------------YNIRL----LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp -------------------------------THHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------------------------chHHH----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 00111 2345678999999999999999999988887777766666
Q ss_pred hHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccc-cccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhH
Q 000110 1107 VAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSI-NLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNA 1185 (2163)
Q Consensus 1107 v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~-~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A 1185 (2163)
...-.-||.+|.+++.+|.|..-++.|-++..+... .. .+.....+|.+.... ++...|
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~l~~~~~~~-----------g~~~~A 283 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS---------LPQAYFLITQIHYKL-----------GKIDKA 283 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG---------HHHHHHHHHHHHHHT-----------TCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh---------HHHHHHHHHHHHHHC-----------CCHHHH
Confidence 666667999999999999999999999998776543 21 244455666665554 356689
Q ss_pred HHHHHHHHhc
Q 000110 1186 EKLYKSALDK 1195 (2163)
Q Consensus 1186 ~~~Y~sAldK 1195 (2163)
+..|+.|++-
T Consensus 284 ~~~~~~al~~ 293 (383)
T 3ulq_A 284 HEYHSKGMAY 293 (383)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=91.79 E-value=3.4 Score=45.91 Aligned_cols=69 Identities=14% Similarity=-0.027 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcChhhHHHHhhhcccccccc-----CCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHH
Q 000110 1070 VLQVGIIHELVGNGVEAEAFLLWGKSISCTQ-----SLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILV 1138 (2163)
Q Consensus 1070 ~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q-----~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~ 1138 (2163)
....|.++...|+-.+|..++.-...+.-.. ..+......-..||.+|.+.+.+|.|+.-.+.|-+.+.
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 3567888888899999998888766654333 11222234445789999999999999887776666554
No 19
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=91.30 E-value=1.1 Score=51.41 Aligned_cols=153 Identities=12% Similarity=0.022 Sum_probs=115.1
Q ss_pred eeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceee
Q 000110 963 FLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEV 1042 (2163)
Q Consensus 963 f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~ 1042 (2163)
++..|.||-++......|+..+|+.+.++|+++-.++
T Consensus 98 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------------------- 134 (378)
T 3q15_A 98 LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV------------------------------------------- 134 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-------------------------------------------
Confidence 6677888999999999999999999999997651100
Q ss_pred ccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCC-cchhhHHHhhhhHHHHhhh
Q 000110 1043 WSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSL-PQFIVAFSSILGKLYRKKQ 1121 (2163)
Q Consensus 1043 w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~L-p~f~v~FsS~LG~ly~kk~ 1121 (2163)
.+ + ...-+.....|.++-..|+=.+|..++.-...+....+- +.-.+.--..||.+|...+
T Consensus 135 ----------~~----~----~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~ 196 (378)
T 3q15_A 135 ----------SD----D----IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK 196 (378)
T ss_dssp ----------CC----H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------CC----h----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC
Confidence 00 0 112344567899999999999999999988887665543 4445555568999999999
Q ss_pred chHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1122 LWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1122 ~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.||.|+.-++.|-++..+..... ..+.+...+|.+.... ++...|+..|+.|++-
T Consensus 197 ~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~lg~~y~~~-----------~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 197 HYDKALPHLEAALELAMDIQNDR--------FIAISLLNIANSYDRS-----------GDDQMAVEHFQKAAKV 251 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHH
Confidence 99999999999998876543321 3455667778776655 4567899999999873
No 20
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=91.09 E-value=19 Score=38.63 Aligned_cols=115 Identities=20% Similarity=0.037 Sum_probs=88.9
Q ss_pred eehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeec
Q 000110 964 LVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVW 1043 (2163)
Q Consensus 964 ~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w 1043 (2163)
..+..|+.++.-+...|+..+|..+..+++++..+.-.
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------------------------ 258 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD------------------------------------------ 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc------------------------------------------
Confidence 34668899999999999999999999999866433100
Q ss_pred cCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhch
Q 000110 1044 SFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLW 1123 (2163)
Q Consensus 1044 ~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~W 1123 (2163)
|+ ...+.....|.++...|+-.+|..++.-...+....+-+......--.||++|.+.+.+
T Consensus 259 ---------------~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 259 ---------------RA----VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp ---------------HH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred ---------------hh----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 01 11334557899999999999999999988887766666666666667899999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 000110 1124 DQAEKELKNAKQILVE 1139 (2163)
Q Consensus 1124 d~Ae~EL~~Ak~~l~~ 1139 (2163)
+.|..-++.|-++..+
T Consensus 320 ~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 320 DQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988877544
No 21
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=91.03 E-value=2.4 Score=44.66 Aligned_cols=173 Identities=16% Similarity=0.092 Sum_probs=117.6
Q ss_pred HHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccc
Q 000110 946 EAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKL 1025 (2163)
Q Consensus 946 ~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~ 1025 (2163)
+.|+++...+...++. ..+..|+.|+.-+...|++.+|+.+..+++++..+.+...
T Consensus 25 ~~al~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------- 80 (283)
T 3edt_B 25 KQALEDLEKTSGHDHP--DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD---------------------- 80 (283)
T ss_dssp HHHHHHHHHHHCSSSH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT----------------------
T ss_pred HHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc----------------------
Confidence 3455554443322221 2467888999999999999999999999998765432100
Q ss_pred cCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcccccccc---CC
Q 000110 1026 HSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQ---SL 1102 (2163)
Q Consensus 1026 ~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q---~L 1102 (2163)
.| ...+...+.|.++...|+-++|+.++.....+.... +-
T Consensus 81 --------------------------------~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 81 --------------------------------HP-----AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp --------------------------------CH-----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred --------------------------------ch-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 01 123345678999999999999999998876663221 11
Q ss_pred cchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhh
Q 000110 1103 PQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERL 1182 (2163)
Q Consensus 1103 p~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l 1182 (2163)
|.. +..-..||.+|.+.+.|+.|+.-++.|-++........ -...+.+...+|.+.... ++.
T Consensus 124 ~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~-----------g~~ 185 (283)
T 3edt_B 124 PDV-AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD------DPNVAKTKNNLASCYLKQ-----------GKY 185 (283)
T ss_dssp HHH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHHHHH-----------TCH
T ss_pred hHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHc-----------CCH
Confidence 333 33445699999999999999999999999866542211 112344566677766555 456
Q ss_pred hhHHHHHHHHHhccC
Q 000110 1183 SNAEKLYKSALDKLN 1197 (2163)
Q Consensus 1183 ~~A~~~Y~sAldKln 1197 (2163)
..|+.+|+.+++...
T Consensus 186 ~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 186 QDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999987543
No 22
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=89.86 E-value=2.3 Score=44.86 Aligned_cols=62 Identities=16% Similarity=-0.046 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1071 LQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1071 lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
...|.++...|+-++|+.++.-... .+...-....-..+|.+|.+.+.++.|..-++.|-++
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456666677777777777665433 1111222233345677777777777777666665543
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=89.73 E-value=9.2 Score=44.93 Aligned_cols=99 Identities=14% Similarity=0.022 Sum_probs=73.9
Q ss_pred HHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhh----------hchHHHHHHHHHHHHHHHhcc
Q 000110 1072 QVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKK----------QLWDQAEKELKNAKQILVEKS 1141 (2163)
Q Consensus 1072 Qvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk----------~~Wd~Ae~EL~~Ak~~l~~~~ 1141 (2163)
..|.++...|+=.+|+..+.-...+.-...-....++.-..+|.+|.+. +.|+.|..-++.|-++-.++
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~- 461 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS- 461 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC-
Confidence 4588888999999999999887777655555556666667789999999 99999999998887763221
Q ss_pred ccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1142 INLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1142 ~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
..+...+|++.... ++...|...|+.|++.
T Consensus 462 -------------~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 462 -------------EQAKIGLAQLKLQM-----------EKIDEAIELFEDSAIL 491 (537)
T ss_dssp -------------HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHh
Confidence 13456677766554 3566799999988764
No 24
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=89.39 E-value=4.2 Score=45.16 Aligned_cols=149 Identities=12% Similarity=-0.039 Sum_probs=104.1
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
...||.++......|+..+|+.+.++|+.+..+ .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----------------------~----------------------- 148 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-----------------------G----------------------- 148 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC-----------------------S-----------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-----------------------C-----------------------
Confidence 344666888888889999999988887754100 0
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcccccccc-CCcchhhHHHhhhhHHHHhhhchH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQ-SLPQFIVAFSSILGKLYRKKQLWD 1124 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q-~Lp~f~v~FsS~LG~ly~kk~~Wd 1124 (2163)
..||... +.....|.++-..|+=++|+.++.-...+.... +-+...+..-.-+|.+|.+++.+|
T Consensus 149 -----------~~~~~~~----~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 2qfc_A 149 -----------IDVYQNL----YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp -----------SCTTHHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -----------CchHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHH
Confidence 0144433 344678999999999999999999877664332 333333345568999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhH-HHHHHHHHh
Q 000110 1125 QAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNA-EKLYKSALD 1194 (2163)
Q Consensus 1125 ~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A-~~~Y~sAld 1194 (2163)
.|..-++.|-++..+..... ..+.+...+|+..... ++...| +..|+.|+.
T Consensus 214 ~Al~~~~kal~~~~~~~~~~--------~~~~~~~~lg~~y~~~-----------g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 214 ESLYQVNKAIEISCRINSMA--------LIGQLYYQRGECLRKL-----------EYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCS--------SHHHHHHHHHHHHHHT-----------TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHHHHHHc-----------CCcHHHHHHHHHHHHH
Confidence 99999999999875433221 3356678888887776 233457 777777763
No 25
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=88.87 E-value=24 Score=42.33 Aligned_cols=205 Identities=12% Similarity=-0.023 Sum_probs=125.2
Q ss_pred HHHHHHHHhhccchhhHHhHHHHHHHHhhcccCCChhhHHHHHhhcccccccccccccchHHHHHhHHHhccccchhhhh
Q 000110 820 LLYNVVDLLSLKGFIEFHNNIYKLMLRLFKCKNVPLEKYLSILWESRRLSHALCISPVNDAFLVNLAEQCGELSKSIEFW 899 (2163)
Q Consensus 820 ll~n~vDLl~lKg~~e~~~~~~kl~i~l~~~k~~~~ek~ls~lWe~rrlsH~lC~sP~~~~fi~~~~~~~g~~~~~~~fw 899 (2163)
..+++.++..-.|-.+-=..+|+-++.+. +.++ ..| ..+...-.+.|+.-.+++.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~----------------~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFG-------PAW----------------IGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHH----------------HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCH-------HHH----------------HHHHHHHHHcCCHHHHHHHH
Confidence 55667777777776665555555555431 1111 112 12233445678888888877
Q ss_pred hhhccCCcccchhhhhhhhhhhccCCCCccccCCCCcccccHHhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhc
Q 000110 900 MGCLQGSQPLLVGFQQSLLFLFANSSHGCYISKSSVQPCITIHDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIAN 979 (2163)
Q Consensus 900 ~~~~~~~~~~~v~~q~~~~~l~~~~~~~~~~~~~~f~~~~~~~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~ 979 (2163)
...++..|....-+. +.-.++. .. + .+++-.+...+.+...|.+ ...|+.|+.-+...
T Consensus 431 ~~~~~~~~~~~~~~~-~l~~~~~--~~------g------~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 431 TTAARLFQGTHLPYL-FLGMQHM--QL------G------NILLANEYLQSSYALFQYD-------PLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHTTTTCSHHHH-HHHHHHH--HH------T------CHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHT
T ss_pred HHHHHhCccchHHHH-HHHHHHH--Hc------C------CHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHh
Confidence 776665554322221 1111111 01 1 1344444444444444542 25688899999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCCCCCCCCccccCCc
Q 000110 980 GRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSP 1059 (2163)
Q Consensus 980 G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lsp 1059 (2163)
|++.+|+.+-+++..+..+. + ..|
T Consensus 489 g~~~~A~~~~~~~~~~~~~~--------------------------------------------~------------~~p 512 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKT--------------------------------------------Q------------SNE 512 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHS--------------------------------------------C------------CCS
T ss_pred CCHHHHHHHHHHHHHhhhcc--------------------------------------------c------------cch
Confidence 99999999999888765322 0 011
Q ss_pred chhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1060 WNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1060 W~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
.. +.+.....|.++...|+-+||+..+.-...+. |--. ..=..||.+|.+.+.||.|..-++.|-++
T Consensus 513 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 513 KP----WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-----TNDA-NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp GG----GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hh----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 11 23455667888889999999999998765553 3222 33357999999999999999998887765
No 26
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=88.00 E-value=5 Score=43.53 Aligned_cols=140 Identities=17% Similarity=0.101 Sum_probs=98.6
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
..|+.|+.-+...|+..+|+.+..++.++. |..
T Consensus 126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------------------------------~~~ 158 (330)
T 3hym_B 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLM-----------------------------------------------KGC 158 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-----------------------------------------------TTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhc-----------------------------------------------ccc
Confidence 458888999999999999999998887653 000
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHH
Q 000110 1047 ASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQA 1126 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~A 1126 (2163)
.+.....|.++...|+-.+|+.++.....+.-. .. ..-..+|.+|.+.+.|+.|
T Consensus 159 --------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~-~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 159 --------------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-----DP-FVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp --------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----CH-HHHHHHHHHHHHTTCHHHH
T ss_pred --------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-----Ch-HHHHHHHHHHHHcccHHHH
Confidence 112334789999999999999999877665422 22 2334699999999999999
Q ss_pred HHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1127 EKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1127 e~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
+.-++.|-++.........- .-.+.+...+|.+.... ++...|+..|+.|++.
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTV-----DKWEPLLNNLGHVCRKL-----------KKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTT-----TTCCHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccc-----cHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHhh
Confidence 99999998876543322110 11233555666665544 4566788888888764
No 27
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=87.99 E-value=9.1 Score=41.47 Aligned_cols=197 Identities=12% Similarity=0.024 Sum_probs=122.1
Q ss_pred HHhHHHhc-cccchhhhhhhhccCCcccchhhhhhhhhhhccCCCCccccCCCCcccccHHhHHHHHHHhhccCCCCCCc
Q 000110 883 VNLAEQCG-ELSKSIEFWMGCLQGSQPLLVGFQQSLLFLFANSSHGCYISKSSVQPCITIHDVKEAASELISSVPVTPRS 961 (2163)
Q Consensus 883 ~~~~~~~g-~~~~~~~fw~~~~~~~~~~~v~~q~~~~~l~~~~~~~~~~~~~~f~~~~~~~~v~~aA~~lis~~p~~~~s 961 (2163)
.......| +...++.++...++..|...-.+ .+...++.. .+ + .++..+...+.+...|.+.
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~l~~~~~~--------~~----~--~~~A~~~~~~a~~~~~~~~-- 159 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAW-IAYGHSFAV--------ES----E--HDQAMAAYFTAAQLMKGCH-- 159 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHH-HHHHHHHHH--------HT----C--HHHHHHHHHHHHHHTTTCS--
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHH-HHHHHHHHH--------cc----C--HHHHHHHHHHHHHhccccH--
Confidence 33444556 55568888887777665432221 111111111 11 1 2333334444444455532
Q ss_pred eeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCcccccccccee
Q 000110 962 VFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASE 1041 (2163)
Q Consensus 962 ~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~ 1041 (2163)
..++.|+.-+...|+..+|+.+.++++.+.
T Consensus 160 -----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------------------------------------- 189 (330)
T 3hym_B 160 -----LPMLYIGLEYGLTNNSKLAERFFSQALSIA--------------------------------------------- 189 (330)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------------------------------------
T ss_pred -----HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------------------------------------------
Confidence 346668888889999999999988876521
Q ss_pred eccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCC----cchhhHHHhhhhHHH
Q 000110 1042 VWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSL----PQFIVAFSSILGKLY 1117 (2163)
Q Consensus 1042 ~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~L----p~f~v~FsS~LG~ly 1117 (2163)
|. ..+.....|.++...|+-.+|+..+.-...+....+- |-. +..-..||.+|
T Consensus 190 --~~--------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~la~~~ 246 (330)
T 3hym_B 190 --PE--------------------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW-EPLLNNLGHVC 246 (330)
T ss_dssp --TT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTC-CHHHHHHHHHH
T ss_pred --CC--------------------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHH-HHHHHHHHHHH
Confidence 00 1244557799999999999999999876665433222 222 23334799999
Q ss_pred HhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHh
Q 000110 1118 RKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALD 1194 (2163)
Q Consensus 1118 ~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAld 1194 (2163)
.+.+.++.|..-++.|-++-.+ ...+...+|.+.... ++...|...|+.|++
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~--------------~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQ--------------NASTYSAIGYIHSLM-----------GNFENAVDYFHTALG 298 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT--------------CSHHHHHHHHHHHHH-----------TCHHHHHHHHHTTTT
T ss_pred HHhcCHHHHHHHHHHHHhhCcc--------------chHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHc
Confidence 9999999999999888776322 234455666665544 345678888887764
No 28
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=87.37 E-value=2 Score=43.50 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=100.5
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHH----HhhhhhceeeccccccccccccccccccCCCCcccccccccee
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQ----LFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASE 1041 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~k----lfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~ 1041 (2163)
+-+||.|.......|++.+|+.+-++|+++.-. ++..-..|.- .|...+ -++... .+.+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---------~~~~~~-------a~~~~~-~~~~ 67 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD---------IGLPND-------AIESLK-KFVV 67 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------TTCHHH-------HHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------CCCHHH-------HHHHHH-HHHh
Confidence 357999999999999999999999999876322 0000000000 000000 000000 0111
Q ss_pred eccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhh
Q 000110 1042 VWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQ 1121 (2163)
Q Consensus 1042 ~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~ 1121 (2163)
..|.. .+.....|.++...|+-.+|...+.....+.- -. ...--.||.+|.+.+
T Consensus 68 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-----~~-~~~~~~lg~~~~~~g 121 (184)
T 3vtx_A 68 LDTTS--------------------AEAYYILGSANFMIDEKQAAIDALQRAIALNT-----VY-ADAYYKLGLVYDSMG 121 (184)
T ss_dssp HCCCC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-HHHHHHHHHHHHHTT
T ss_pred cCchh--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----cc-hHHHHHHHHHHHHhC
Confidence 11111 23345678889999999999998877655432 21 223346899999999
Q ss_pred chHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1122 LWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1122 ~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.||.|..-++.|-++- .. ...+...+|.+.... ++...|+..|+.||+.
T Consensus 122 ~~~~A~~~~~~~l~~~---p~-----------~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 122 EHDKAIEAYEKTISIK---PG-----------FIRAYQSIGLAYEGK-----------GLRDEAVKYFKKALEK 170 (184)
T ss_dssp CHHHHHHHHHHHHHHC---TT-----------CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHhc---ch-----------hhhHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhC
Confidence 9999998888776552 11 134556677766555 4567899999999864
No 29
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=87.35 E-value=46 Score=38.14 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccc
Q 000110 1067 LESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSC 1146 (2163)
Q Consensus 1067 lES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C 1146 (2163)
++..+..|.++...|+-.||..++.-...+. .+-|.+....-..+|.+|.+.+.++.|..-++.|-++-.+
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~------- 327 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD------- 327 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-------
Confidence 3455677999999999999999998766543 3344444556678999999999999999988887665211
Q ss_pred cccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1147 LKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1147 ~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
...+...+|.+.... ++...|...|+.|++.
T Consensus 328 -------~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 328 -------NVNALKDRAEAYLIE-----------EMYDEAIQDYETAQEH 358 (450)
T ss_dssp -------CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHTT
T ss_pred -------cHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHh
Confidence 124556677766554 4567899999999873
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=87.18 E-value=3.9 Score=42.61 Aligned_cols=160 Identities=10% Similarity=-0.049 Sum_probs=101.4
Q ss_pred eehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeec
Q 000110 964 LVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVW 1043 (2163)
Q Consensus 964 ~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w 1043 (2163)
..+..|+.|+.-+...|+..+|+.+-+++.++... .+-....|...+ -++.+.. +.+
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~~~~-------a~~~~~~-~~~-- 133 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------------ADILTKLRNAEK-------ELKKAEA-EAY-- 133 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHH-------HHHHHHH-HHH--
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------------hHHHHHHhHHHH-------HHHHHHH-HHH--
Confidence 34678999999999999999999999999885211 000000000000 0000000 000
Q ss_pred cCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhch
Q 000110 1044 SFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLW 1123 (2163)
Q Consensus 1044 ~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~W 1123 (2163)
..| ...+.....|.++...|+-.+|...+.-...+.-. . ...-..||.+|.+.+.|
T Consensus 134 -------------~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~-~~~~~~l~~~~~~~~~~ 189 (258)
T 3uq3_A 134 -------------VNP-----EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-----D-ARGYSNRAAALAKLMSF 189 (258)
T ss_dssp -------------CCH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-HHHHHHHHHHHHHTTCH
T ss_pred -------------cCc-----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-----c-HHHHHHHHHHHHHhCCH
Confidence 011 13455667899999999999999999876655322 1 23345699999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1124 DQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1124 d~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
+.|..-++.|-++-.+ ...+...+|++.... ++...|...|+.|+..
T Consensus 190 ~~A~~~~~~al~~~~~--------------~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 190 PEAIADCNKAIEKDPN--------------FVRAYIRKATAQIAV-----------KEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHH--------------HHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHh
Confidence 9999999888664221 133455667666555 3456788888888764
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=86.93 E-value=4.7 Score=42.92 Aligned_cols=31 Identities=13% Similarity=-0.078 Sum_probs=27.3
Q ss_pred ehhHHHHhHHHHHhcchHHHHHHHHHHHHHH
Q 000110 965 VGYLYYDLCERLIANGRLLEALSYAIEAHRL 995 (2163)
Q Consensus 965 a~~LyydL~erl~~~G~l~~A~syakEa~~L 995 (2163)
.+..|+.++.-+...|+..+|+.+-+++..+
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5667899999999999999999999998873
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=86.71 E-value=6.6 Score=40.93 Aligned_cols=103 Identities=15% Similarity=0.069 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhcccccccc--------------------CCcchhhHHHhhhhHHHHhhhchHHHH
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQ--------------------SLPQFIVAFSSILGKLYRKKQLWDQAE 1127 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q--------------------~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae 1127 (2163)
+.....|.++...|+-++|...+.-...+...- .+..--...-..+|.+|.+.+.|+.|.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHH
Confidence 344556666666666666666666554432110 012223333457999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1128 KELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1128 ~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.-++.|-++-.++ ..+...+|.+.... ++...|+..|+.|++.
T Consensus 160 ~~~~~a~~~~~~~--------------~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 160 KAYTEMIKRAPED--------------ARGYSNRAAALAKL-----------MSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHCTTC--------------HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccc--------------HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHh
Confidence 9988887653221 24555666665544 3566899999999874
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=86.59 E-value=10 Score=40.95 Aligned_cols=69 Identities=9% Similarity=-0.030 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcChhhHHHHhhhccccccccCCcch------hhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHh
Q 000110 1071 LQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQF------IVAFSSILGKLYRKKQLWDQAEKELKNAKQILVE 1139 (2163)
Q Consensus 1071 lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f------~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~ 1139 (2163)
...|.++...|+-.+|...+.....+......+-- ....-..||.+|.+.+.+|.|+.-++.|-+++.+
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 45677788888888888888766655433222110 2233356888888888888888777766665544
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=86.36 E-value=6.3 Score=40.92 Aligned_cols=95 Identities=12% Similarity=0.038 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccccccc
Q 000110 1070 VLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKC 1149 (2163)
Q Consensus 1070 ~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C 1149 (2163)
....|.++...|+-.+|+.++.-...+.- +-+ ..--.+|.+|.+.+.++.|..-++.|-+.-.+
T Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------- 191 (243)
T 2q7f_A 128 FYMLGTVLVKLEQPKLALPYLQRAVELNE--NDT----EARFQFGMCLANEGMLDEALSQFAAVTEQDPG---------- 191 (243)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCT--TCH----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC--ccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------
Confidence 45678899999999999999887654422 222 23357999999999999999999887665221
Q ss_pred chhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1150 RLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1150 ~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
...+...+|.+.... ++...|+..|+.+++.
T Consensus 192 ----~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 192 ----HADAFYNAGVTYAYK-----------ENREKALEMLDKAIDI 222 (243)
T ss_dssp ----CHHHHHHHHHHHHHT-----------TCTTHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHcc
Confidence 123455666665544 3455789999988764
No 35
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=86.36 E-value=15 Score=35.86 Aligned_cols=132 Identities=13% Similarity=-0.016 Sum_probs=90.5
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
...|+.++.-+...|+..+|+.+.+++.++. |.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------------------~~ 74 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADA-----------------------------------------------PD 74 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------------------------------CC
Confidence 5678888999999999999999988887650 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
+ .+.....|.++...|+-.+|+.++.....+.. +-| ..-..+|.+|.+.+.++.
T Consensus 75 ~--------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 75 N--------------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP--INF----NVRFRLGVALDNLGRFDE 128 (186)
T ss_dssp C--------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCH----HHHHHHHHHHHHTTCHHH
T ss_pred C--------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--HhH----HHHHHHHHHHHHcCcHHH
Confidence 0 02234567888888999999998876655421 111 223568999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1126 AEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1126 Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
|..-++.|-+.-.++ ..+...+|.+.... ++...|...|+.+++.
T Consensus 129 A~~~~~~~~~~~~~~--------------~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 129 AIDSFKIALGLRPNE--------------GKVHRAIAFSYEQM-----------GRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccc--------------hHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHc
Confidence 988888776542111 23445666665544 3566788888888764
No 36
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=85.86 E-value=12 Score=43.36 Aligned_cols=96 Identities=17% Similarity=0.119 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccc
Q 000110 1069 SVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLK 1148 (2163)
Q Consensus 1069 S~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~ 1148 (2163)
.....|.++...|+-.+|...+.-...+.-. - ...-..+|.+|.+.+.|+.|..-++.|-++-.++
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 371 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPE--N----IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA-------- 371 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS--C----SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC--------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhChh--h----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC--------
Confidence 3467789999999999999999876554322 1 1233468999999999999999998887653221
Q ss_pred cchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1149 CRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1149 C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
..+...+|.+.... ++...|+..|+.|++.
T Consensus 372 ------~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 372 ------PEVPNFFAEILTDK-----------NDFDKALKQYDLAIEL 401 (514)
T ss_dssp ------SHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHh
Confidence 23445566665554 3567899999999864
No 37
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.94 E-value=9.7 Score=42.51 Aligned_cols=106 Identities=15% Similarity=0.068 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhh-hchHHHHHHHHHHHHHHHhcccccccccc
Q 000110 1071 LQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKK-QLWDQAEKELKNAKQILVEKSINLSCLKC 1149 (2163)
Q Consensus 1071 lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk-~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C 1149 (2163)
.+.|.++...|+=+||..++.-.-.|....+-|.-.+.--.-||.+|.+. +.+|.|..-++.|-++..+.....
T Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~----- 155 (292)
T 1qqe_A 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA----- 155 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH-----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH-----
Confidence 57899999999999999999877777655555544444456799999997 999999999999999887554321
Q ss_pred chhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1150 RLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1150 ~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
....+...+|++.... ++...|...|+.|++.
T Consensus 156 ---~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 156 ---LSNKCFIKCADLKALD-----------GQYIEASDIYSKLIKS 187 (292)
T ss_dssp ---HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHH
Confidence 1233455667766554 4567899999999864
No 38
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=84.33 E-value=6.8 Score=44.34 Aligned_cols=118 Identities=18% Similarity=0.023 Sum_probs=87.3
Q ss_pred eeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceee
Q 000110 963 FLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEV 1042 (2163)
Q Consensus 963 f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~ 1042 (2163)
+.....++.|+.-+...|++.+|..+..+++.+..+... ..
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-------------------~~-------------------- 130 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL-------------------EQ-------------------- 130 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------TT--------------------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-------------------cc--------------------
Confidence 445667788888888899999999998888876543200 00
Q ss_pred ccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhc
Q 000110 1043 WSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQL 1122 (2163)
Q Consensus 1043 w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~ 1122 (2163)
+|. ........|.++-..|+-++|+.++..+-.+....+-|... ..-..||.+|..++.
T Consensus 131 ---------------~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~la~~~~~~g~ 189 (373)
T 1hz4_A 131 ---------------LPM-----HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL-QCLAMLIQCSLARGD 189 (373)
T ss_dssp ---------------STH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH-HHHHHHHHHHHHHTC
T ss_pred ---------------CcH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH-HHHHHHHHHHHHcCC
Confidence 011 11233467888889999999999999998887766655533 334579999999999
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 000110 1123 WDQAEKELKNAKQILVEK 1140 (2163)
Q Consensus 1123 Wd~Ae~EL~~Ak~~l~~~ 1140 (2163)
+|.|..-++.|.++..+.
T Consensus 190 ~~~A~~~l~~a~~~~~~~ 207 (373)
T 1hz4_A 190 LDNARSQLNRLENLLGNG 207 (373)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999998886553
No 39
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=84.00 E-value=4.1 Score=45.72 Aligned_cols=96 Identities=15% Similarity=0.043 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccc
Q 000110 1069 SVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLK 1148 (2163)
Q Consensus 1069 S~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~ 1148 (2163)
.....|.++...|+-++|+..+.....+.- -...+ =..||.+|.+.+.++.|..-++.|-++-.+
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------- 279 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRP-----EDYSL-WNRLGATLANGDRSEEAVEAYTRALEIQPG--------- 279 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------
Confidence 345567777778888888887776655431 11122 245788888888888887777776654111
Q ss_pred cchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1149 CRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1149 C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
...+...+|.+.... ++...|...|+.|++.
T Consensus 280 -----~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 280 -----FIRSRYNLGISCINL-----------GAYREAVSNFLTALSL 310 (365)
T ss_dssp -----CHHHHHHHHHHHHHH-----------TCCHHHHHHHHHHHHH
T ss_pred -----chHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHh
Confidence 144556666665554 3456788888888764
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=83.51 E-value=6.5 Score=40.83 Aligned_cols=132 Identities=16% Similarity=0.073 Sum_probs=91.8
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
...|+.++.-+...|+..+|+.+.+++.++. |.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------------------~~ 89 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELD-----------------------------------------------SS 89 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------------------------------Cc
Confidence 4677788888888888888888888776550 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
..+.....|.++...|+-.+|+.++.-...+.- .-| ..-..+|.+|.+.+.|+.
T Consensus 90 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 90 --------------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--ENG----DLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--CSH----HHHHHHHHHHHHTSCHHH
T ss_pred --------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHhccHHH
Confidence 123345678889999999999999877655432 111 223468999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1126 AEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1126 Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
|..-++.|-++-.++ ..+...+|.+.... ++...|+..|+.++..
T Consensus 144 A~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 144 ALPYLQRAVELNEND--------------TEARFQFGMCLANE-----------GMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHH-----------TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcc--------------HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHh
Confidence 999998887653221 23445566655444 3456788888888765
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=83.17 E-value=10 Score=38.52 Aligned_cols=30 Identities=10% Similarity=-0.198 Sum_probs=21.4
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHH
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRL 995 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~L 995 (2163)
...|+.++.-+...|+..+|+.+..++.++
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 71 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSI 71 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 346677777777778887777777777654
No 42
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=82.77 E-value=9.2 Score=43.01 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhc
Q 000110 1067 LESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEK 1140 (2163)
Q Consensus 1067 lES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~ 1140 (2163)
.......|.+++. |+-.+|..+++-.-.+....+-+......-.-||.+|.+.+.+|.|..-++.|-++..++
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 3455566666666 666666666666555555444444444444456666666666666666666666655443
No 43
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=81.54 E-value=9.6 Score=40.05 Aligned_cols=139 Identities=12% Similarity=0.025 Sum_probs=98.9
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
..||.++..++..|+..+|+.+-.+++++.. |
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----------------------------------------------~-- 39 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN----------------------------------------------N-- 39 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----------------------------------------------T--
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccC----------------------------------------------C--
Confidence 5688899999999999999999999987643 0
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHH
Q 000110 1047 ASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQA 1126 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~A 1126 (2163)
..+ +.....|.++...|+=.+|...+.-.-.+. |-. ...--.||.+|.+.+.++.|
T Consensus 40 ----------~~~--------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~-~~~~~~l~~~~~~~~~~~~A 95 (228)
T 4i17_A 40 ----------QDS--------VTAYNCGVCADNIKKYKEAADYFDIAIKKN-----YNL-ANAYIGKSAAYRDMKNNQEY 95 (228)
T ss_dssp ----------CCH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CSH-HHHHHHHHHHHHHTTCHHHH
T ss_pred ----------CCc--------HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-----cch-HHHHHHHHHHHHHcccHHHH
Confidence 001 233447999999999999999987654332 222 22334699999999999999
Q ss_pred HHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1127 EKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1127 e~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
..-++.|-++-.++... ...-+.+...+|.+.... ++...|+..|+.|+..
T Consensus 96 ~~~~~~al~~~p~~~~~-------~~~~~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 96 IATLTEGIKAVPGNATI-------EKLYAIYYLKEGQKFQQA-----------GNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHSTTCHHH-------HHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCCcHHH-------HHHHHHHHHHHhHHHHHh-----------ccHHHHHHHHHHHHhc
Confidence 99998887765443221 111223566677666444 5677899999999874
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=81.07 E-value=2.5 Score=51.19 Aligned_cols=140 Identities=16% Similarity=-0.017 Sum_probs=103.1
Q ss_pred ehhHHHHhHHHHHhcchH-HHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeec
Q 000110 965 VGYLYYDLCERLIANGRL-LEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVW 1043 (2163)
Q Consensus 965 a~~LyydL~erl~~~G~l-~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w 1043 (2163)
-+..||.++.-+...|++ .+|+.+-++|+++.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----------------------------------------------- 133 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----------------------------------------------- 133 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----------------------------------------------
Confidence 467899999999999999 99999999998762
Q ss_pred cCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhh---
Q 000110 1044 SFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKK--- 1120 (2163)
Q Consensus 1044 ~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk--- 1120 (2163)
|. +.+.....|.++...|+-+||+..+.-.-.+. |- ...-..||.+|.+.
T Consensus 134 p~--------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~--~~~~~~lg~~~~~~~~~ 186 (474)
T 4abn_A 134 PE--------------------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-----KN--KVSLQNLSMVLRQLQTD 186 (474)
T ss_dssp TT--------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-----CC--HHHHHHHHHHHTTCCCS
T ss_pred CC--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC--HHHHHHHHHHHHHhccC
Confidence 10 02234567899999999999999998776664 33 24456799999999
Q ss_pred ------hchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHh
Q 000110 1121 ------QLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALD 1194 (2163)
Q Consensus 1121 ------~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAld 1194 (2163)
+.|+.|..-++.|-++--++ ......+|.+.... ++..+. ..+++..|+..|+.|+.
T Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~p~~--------------~~~~~~lg~~~~~~--~~~~~~-~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 187 SGDEHSRHVMDSVRQAKLAVQMDVLD--------------GRSWYILGNAYLSL--YFNTGQ-NPKISQQALSAYAQAEK 249 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHH--HHHTTC-CHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHH--HHhhcc-ccchHHHHHHHHHHHHH
Confidence 99999999888887753222 23445666665543 133323 55788889999999986
Q ss_pred c
Q 000110 1195 K 1195 (2163)
Q Consensus 1195 K 1195 (2163)
.
T Consensus 250 ~ 250 (474)
T 4abn_A 250 V 250 (474)
T ss_dssp H
T ss_pred h
Confidence 4
No 45
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=80.37 E-value=21 Score=32.65 Aligned_cols=131 Identities=21% Similarity=0.189 Sum_probs=85.9
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
..||.++..+...|+..+|+.+.+++.++. ..+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------~~~--------------- 34 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------------PRS--------------- 34 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------------TTC---------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------------------------------Ccc---------------
Confidence 357889999999999999999988885420 000
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHH
Q 000110 1047 ASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQA 1126 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~A 1126 (2163)
.+.....|.++...|+-.+|..++.....+.. + ... .--.+|.+|.+.+.|+.|
T Consensus 35 --------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~---~~~-~~~~l~~~~~~~~~~~~A 88 (136)
T 2fo7_A 35 --------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--R---SAE-AWYNLGNAYYKQGDYDEA 88 (136)
T ss_dssp --------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--T---CHH-HHHHHHHHHHTTTCHHHH
T ss_pred --------------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--C---chH-HHHHHHHHHHHhcCHHHH
Confidence 01223467777788999999998887654431 1 111 123689999999999999
Q ss_pred HHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1127 EKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1127 e~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.+-++.|-++-.++ ..+...+|.+.... ++...|+..|+.+++.
T Consensus 89 ~~~~~~~~~~~~~~--------------~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 89 IEYYQKALELDPRS--------------AEAWYNLGNAYYKQ-----------GDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHCTTC--------------HHHHHHHHHHHHTT-----------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--------------hHHHHHHHHHHHHH-----------ccHHHHHHHHHHHHcc
Confidence 88888776642211 12334455544332 4456788888888753
No 46
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=79.93 E-value=2 Score=50.46 Aligned_cols=190 Identities=13% Similarity=0.010 Sum_probs=116.5
Q ss_pred HhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccc
Q 000110 942 HDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDI 1021 (2163)
Q Consensus 942 ~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~ 1021 (2163)
++..+...+.+...|.+.......+..|+.++..+...|+..+|+.+.+++.++... ..--+ ..+.. ....|+.
T Consensus 219 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~--~l~~~---~~~~~~~ 292 (537)
T 3fp2_A 219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYI--FLALT---LADKENS 292 (537)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHH--HHHHH---TCCSSCC
T ss_pred HHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHH--HHHHH---HHHhcCH
Confidence 444444556667777765555566778999999999999999999999999886432 11000 00000 0000000
Q ss_pred cccccCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccC
Q 000110 1022 SQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQS 1101 (2163)
Q Consensus 1022 s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~ 1101 (2163)
. .-++.+... .+.-|. +.+.....|.++...|+-.+|+..+.-...+.- +
T Consensus 293 ~-------~A~~~~~~~-~~~~~~--------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~ 342 (537)
T 3fp2_A 293 Q-------EFFKFFQKA-VDLNPE--------------------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--E 342 (537)
T ss_dssp H-------HHHHHHHHH-HHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred H-------HHHHHHHHH-hccCCC--------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--C
Confidence 0 001111110 111111 123456789999999999999999987665542 2
Q ss_pred CcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhh
Q 000110 1102 LPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIER 1181 (2163)
Q Consensus 1102 Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~ 1181 (2163)
.+ ..-..||.+|.+.+.|+.|..-++.|-++-.++ ..+...+|.+.... ++
T Consensus 343 ~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~-----------g~ 393 (537)
T 3fp2_A 343 NV----YPYIQLACLLYKQGKFTESEAFFNETKLKFPTL--------------PEVPTFFAEILTDR-----------GD 393 (537)
T ss_dssp CS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------THHHHHHHHHHHHT-----------TC
T ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------hHHHHHHHHHHHHh-----------CC
Confidence 22 223459999999999999999998887652221 23445566665544 45
Q ss_pred hhhHHHHHHHHHhcc
Q 000110 1182 LSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1182 l~~A~~~Y~sAldKl 1196 (2163)
...|+..|+.|++.-
T Consensus 394 ~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 778999999998753
No 47
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=79.65 E-value=13 Score=40.04 Aligned_cols=172 Identities=12% Similarity=0.026 Sum_probs=103.4
Q ss_pred HhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccc
Q 000110 942 HDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDI 1021 (2163)
Q Consensus 942 ~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~ 1021 (2163)
++-.+.-.+++..-|.+. .+...+|.|+.-+...|+..+|+.+-..+.++.
T Consensus 32 ~~A~~~~~~~l~~~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~------------------------- 82 (261)
T 3qky_A 32 DRAIEYFKAVFTYGRTHE----WAADAQFYLARAYYQNKEYLLAASEYERFIQIY------------------------- 82 (261)
T ss_dssp HHHHHHHHHHGGGCSCST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHhCCCCc----chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-------------------------
Confidence 343444445555555543 335667777888888888888888777665431
Q ss_pred cccccCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHH--------hcChhhHHHHhhhc
Q 000110 1022 SQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHEL--------VGNGVEAEAFLLWG 1093 (2163)
Q Consensus 1022 s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~--------iGng~EAe~~l~~G 1093 (2163)
|.+ |. +-+.....|.++.. .|+-++|...|...
T Consensus 83 ----------------------p~~------------~~-----~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~ 123 (261)
T 3qky_A 83 ----------------------QID------------PR-----VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF 123 (261)
T ss_dssp ----------------------TTC------------TT-----HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred ----------------------CCC------------ch-----hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 111 10 11345667777777 88888998888765
Q ss_pred cccccccCCcchhhHH-------------HhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhh
Q 000110 1094 KSISCTQSLPQFIVAF-------------SSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQ 1160 (2163)
Q Consensus 1094 k~iS~~q~Lp~f~v~F-------------sS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~ 1160 (2163)
-.. .-+-|...-+. .--+|.+|.+.+.|+.|...++.|-+..-++. ........
T Consensus 124 l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~a~~~ 190 (261)
T 3qky_A 124 IDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP-----------WADDALVG 190 (261)
T ss_dssp HHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST-----------THHHHHHH
T ss_pred HHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc-----------hHHHHHHH
Confidence 433 22222222111 13579999999999999999988766543321 11223445
Q ss_pred hhhcccccCCCCCCC--CcchhhhhhHHHHHHHHHhccC
Q 000110 1161 LGDLSRSYSGCDDRG--NTLIERLSNAEKLYKSALDKLN 1197 (2163)
Q Consensus 1161 lgDL~~~~~~~~~~~--~~~~~~l~~A~~~Y~sAldKln 1197 (2163)
+|...... -+.. ....++...|+..|+.++..--
T Consensus 191 l~~~~~~~---g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 191 AMRAYIAY---AEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHH---HHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHh---cccchhhcccchHHHHHHHHHHHHHHCC
Confidence 55544433 0000 1134888899999999987543
No 48
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=79.44 E-value=8.3 Score=42.79 Aligned_cols=112 Identities=10% Similarity=-0.084 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccc
Q 000110 1066 YLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLS 1145 (2163)
Q Consensus 1066 YlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~ 1145 (2163)
++.....+|.++...|+-.+|..++.-...+.....-+...+..-..+|.+|.+++.+|.|..-++.|-++........
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~- 192 (293)
T 2qfc_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE- 192 (293)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc-
Confidence 3344456899999999999999999877766554444444444567899999999999999999999998877654211
Q ss_pred ccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1146 CLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1146 C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.+.+.+...+|.+.... ++...|+..|+.|++-
T Consensus 193 ------~~~~~~~~nlg~~y~~~-----------~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 193 ------EFDVKVRYNHAKALYLD-----------SRYEESLYQVNKAIEI 225 (293)
T ss_dssp ------HHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred ------cchHHHHHhHHHHHHHH-----------hhHHHHHHHHHHHHHH
Confidence 11235566677766554 5567899999999864
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=78.77 E-value=12 Score=38.04 Aligned_cols=168 Identities=13% Similarity=-0.013 Sum_probs=96.2
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
...|+.++..+...|+..+|+.+.+++.++...-..--+ ..+.. +...|+.. .-++.+.. +.+.-|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~l~~~---~~~~~~~~-------~A~~~~~~-a~~~~~~ 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWL--VRAEI---YQYLKVND-------KAQESFRQ-ALSIKPD 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHH---HHHTTCHH-------HHHHHHHH-HHHHCTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHH--HHHHH---HHHcCChH-------HHHHHHHH-HHHhCCC
Confidence 457889999999999999999999998875322000000 00000 00000000 00011110 0011111
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHh-cChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELV-GNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWD 1124 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~i-Gng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd 1124 (2163)
. .+.....|.++... |+-.+|+..+.-... ...-|-. ...-..+|.+|.+.+.++
T Consensus 75 ~--------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~-~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 75 S--------------------AEINNNYGWFLCGRLNRPAESMAYFDKALA---DPTYPTP-YIANLNKGICSAKQGQFG 130 (225)
T ss_dssp C--------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT---STTCSCH-HHHHHHHHHHHHHTTCHH
T ss_pred C--------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc---CcCCcch-HHHHHHHHHHHHHcCCHH
Confidence 0 12335678888888 999999888876654 1122322 333457899999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1125 QAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1125 ~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.|..-++.|-++-.+ ...+...+|++.... ++...|...|+.+++.
T Consensus 131 ~A~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 131 LAEAYLKRSLAAQPQ--------------FPPAFKELARTKMLA-----------GQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHHHHSTT--------------CHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--------------CchHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHh
Confidence 998888777554221 133455666665544 4566788888888764
No 50
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=78.33 E-value=6.8 Score=44.35 Aligned_cols=153 Identities=13% Similarity=0.052 Sum_probs=110.7
Q ss_pred ehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeecc
Q 000110 965 VGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWS 1044 (2163)
Q Consensus 965 a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~ 1044 (2163)
.+.+++-++..++..|+..+|+.+..+++.+- . . .
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------~----~-------~---------------------- 47 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEEL------------P----P-------G---------------------- 47 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC------------C----T-------T----------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------------C----C-------C----------------------
Confidence 34566777778889999999999998886520 0 0 0
Q ss_pred CCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchH
Q 000110 1045 FDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWD 1124 (2163)
Q Consensus 1045 ~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd 1124 (2163)
.|| .+.......|.++-..|+-++|+.++.....+....+-|...+..-..||.+|..++.++
T Consensus 48 -------------~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 110 (373)
T 1hz4_A 48 -------------WFY----SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ 110 (373)
T ss_dssp -------------CHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -------------chh----HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHH
Confidence 011 133456778999999999999999999999988887877776667788999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhcc
Q 000110 1125 QAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1125 ~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKl 1196 (2163)
.|+.-++.|-++..+.....+ .....+...+|.+.... +++..|+.+|+.|++-.
T Consensus 111 ~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 111 TAWETQEKAFQLINEQHLEQL------PMHEFLVRIRAQLLWAW-----------ARLDEAEASARSGIEVL 165 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCTTS------THHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHh
Confidence 999999999888765432100 11223334455554433 56778999999998653
No 51
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=78.05 E-value=13 Score=41.21 Aligned_cols=120 Identities=14% Similarity=0.046 Sum_probs=97.4
Q ss_pred eeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceee
Q 000110 963 FLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEV 1042 (2163)
Q Consensus 963 f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~ 1042 (2163)
+..+..|+.|+.-....|+..+|+.|-++|+.+-.++ . . .
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~------------~-~-------~-------------------- 191 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL------------H-D-------N-------------------- 191 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------------S-C-------C--------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc------------c-c-------c--------------------
Confidence 4556678999999999999999999999998753221 0 0 0
Q ss_pred ccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhh-
Q 000110 1043 WSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQ- 1121 (2163)
Q Consensus 1043 w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~- 1121 (2163)
+ ..+.......|.++-..|+=.+|..++.-+..++...+-+......--.+|.+|.+.+
T Consensus 192 ----------------~----~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 192 ----------------E----EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp ----------------H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred ----------------h----hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 0 0344455788999999999999999999999999888877777788889999999999
Q ss_pred chHHHHHHHHHHHHHHHhccc
Q 000110 1122 LWDQAEKELKNAKQILVEKSI 1142 (2163)
Q Consensus 1122 ~Wd~Ae~EL~~Ak~~l~~~~~ 1142 (2163)
.+|.|..-++.|.++......
T Consensus 252 ~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 252 EEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHhCC
Confidence 579999999999999876544
No 52
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=77.71 E-value=11 Score=38.95 Aligned_cols=104 Identities=14% Similarity=0.064 Sum_probs=77.1
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
+..|+.++.-+...|+..+|+.+..+|+++. |.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------------------------------~~ 69 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRD-----------------------------------------------KH 69 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------------------------------cc
Confidence 4688888888888899998888888877541 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccC----------CcchhhHHHhhhhH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQS----------LPQFIVAFSSILGK 1115 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~----------Lp~f~v~FsS~LG~ 1115 (2163)
+.+.....|.++...|+-.+|...+.....+.-... +.......-..||.
T Consensus 70 --------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (213)
T 1hh8_A 70 --------------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129 (213)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence 013346789999999999999999887665443322 22333444567999
Q ss_pred HHHhhhchHHHHHHHHHHHHH
Q 000110 1116 LYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1116 ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
+|.+.+.|+.|..-++.|-++
T Consensus 130 ~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 130 MYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHccCHHHHHHHHHHHHHc
Confidence 999999999999988887654
No 53
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=77.49 E-value=13 Score=34.63 Aligned_cols=106 Identities=8% Similarity=-0.126 Sum_probs=78.5
Q ss_pred CCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccc
Q 000110 958 TPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSS 1037 (2163)
Q Consensus 958 ~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s 1037 (2163)
+......-..-|+.++..++..|+..+|+.+..++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------------------------- 46 (133)
T 2lni_A 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----------------------------------------- 46 (133)
T ss_dssp TCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-----------------------------------------
T ss_pred CCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------------------------
Confidence 334444556778999999999999999999988887430
Q ss_pred cceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHH
Q 000110 1038 VASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLY 1117 (2163)
Q Consensus 1038 ~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly 1117 (2163)
|.+ .+.....|.++...|+-++|+..+.-...+.-. -+ ..--.+|.+|
T Consensus 47 ------~~~--------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~----~~~~~la~~~ 94 (133)
T 2lni_A 47 ------PKD--------------------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--FI----KGYTRKAAAL 94 (133)
T ss_dssp ------TTC--------------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHH
T ss_pred ------CCc--------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ch----HHHHHHHHHH
Confidence 000 134567899999999999999998876654321 11 2234689999
Q ss_pred HhhhchHHHHHHHHHHHHH
Q 000110 1118 RKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1118 ~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
.+.+.++.|..-++.|-++
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999888765
No 54
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=77.19 E-value=11 Score=34.80 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=77.2
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
+..|+.++..+...|+..+|+.+-.++.++. |.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------------------------------~~ 36 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-----------------------------------------------PT 36 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------------------------------------Cc
Confidence 4568999999999999999999999987640 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcccccccc-CCcchhhHHHhhhhHHHHhhhchH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQ-SLPQFIVAFSSILGKLYRKKQLWD 1124 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q-~Lp~f~v~FsS~LG~ly~kk~~Wd 1124 (2163)
+ .+.....|.++...|+=.+|..++.....+.... +-.......--.+|.+|.+.+.|+
T Consensus 37 ~--------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 37 N--------------------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp C--------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred c--------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 0 1234567899999999999999998876665422 111111223347899999999999
Q ss_pred HHHHHHHHHHHH
Q 000110 1125 QAEKELKNAKQI 1136 (2163)
Q Consensus 1125 ~Ae~EL~~Ak~~ 1136 (2163)
.|..-++.|-++
T Consensus 97 ~A~~~~~~~~~~ 108 (131)
T 1elr_A 97 DAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999888764
No 55
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=76.76 E-value=22 Score=34.62 Aligned_cols=102 Identities=5% Similarity=-0.165 Sum_probs=77.1
Q ss_pred eeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceee
Q 000110 963 FLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEV 1042 (2163)
Q Consensus 963 f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~ 1042 (2163)
.-.+..|+.++..++..|+..+|+.+..++.++.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------------------------------------------- 43 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELN---------------------------------------------- 43 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------------------------------
Confidence 3456789999999999999999999999988750
Q ss_pred ccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhc
Q 000110 1043 WSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQL 1122 (2163)
Q Consensus 1043 w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~ 1122 (2163)
|.. .+.....|.++...|+-.+|...+.-...+. .+-| ..-..+|.+|.+.+.
T Consensus 44 -~~~--------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~----~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 44 -PSN--------------------AIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYI----KGYYRRAASNMALGK 96 (166)
T ss_dssp -TTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH----HHHHHHHHHHHHTTC
T ss_pred -CCC--------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccH----HHHHHHHHHHHHhcc
Confidence 000 2345678899999999999999888766553 2222 223468999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 000110 1123 WDQAEKELKNAKQIL 1137 (2163)
Q Consensus 1123 Wd~Ae~EL~~Ak~~l 1137 (2163)
++.|..-++.|-++-
T Consensus 97 ~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 97 FRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999888877653
No 56
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.32 E-value=13 Score=41.59 Aligned_cols=115 Identities=11% Similarity=-0.013 Sum_probs=82.8
Q ss_pred eehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeec
Q 000110 964 LVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVW 1043 (2163)
Q Consensus 964 ~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w 1043 (2163)
-++..|..|..-+...|+..+|+.+-.+|+.+..++ |+
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-------------------g~----------------------- 112 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-------------------GQ----------------------- 112 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------------TC-----------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------------------CC-----------------------
Confidence 456778888888888889999998888888865321 00
Q ss_pred cCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHh-cChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhc
Q 000110 1044 SFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELV-GNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQL 1122 (2163)
Q Consensus 1044 ~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~i-Gng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~ 1122 (2163)
| ....+.....|.+++.. |+-++|..+++-.-.+....+-+......-.-||.+|.+.+.
T Consensus 113 ---------------~----~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 113 ---------------F----RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp ---------------H----HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------H----HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 0 01122334689999995 999999999998777765544444434444578999999999
Q ss_pred hHHHHHHHHHHHHHHHh
Q 000110 1123 WDQAEKELKNAKQILVE 1139 (2163)
Q Consensus 1123 Wd~Ae~EL~~Ak~~l~~ 1139 (2163)
++.|..-++.|-++-.+
T Consensus 174 ~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999888877765443
No 57
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=74.85 E-value=32 Score=31.62 Aligned_cols=98 Identities=11% Similarity=-0.059 Sum_probs=74.6
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
+..|+.++..++..|+..+|+.+.+++.++. |.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------------------~~ 44 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-----------------------------------------------PA 44 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----------------------------------------------CC
Confidence 4678899999999999999999998887530 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
+ .+.....|.++...|+-.+|...+.-.-.+.- +-| ..--.+|.+|.+.+.|+.
T Consensus 45 ~--------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~ 98 (131)
T 2vyi_A 45 N--------------------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AYS----KAYGRMGLALSSLNKHVE 98 (131)
T ss_dssp C--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HHHHHHHHHHHHTTCHHH
T ss_pred C--------------------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cCH----HHHHHHHHHHHHhCCHHH
Confidence 0 12345778899999999999999887655432 212 223578999999999999
Q ss_pred HHHHHHHHHHH
Q 000110 1126 AEKELKNAKQI 1136 (2163)
Q Consensus 1126 Ae~EL~~Ak~~ 1136 (2163)
|..-++.|-++
T Consensus 99 A~~~~~~~~~~ 109 (131)
T 2vyi_A 99 AVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999888776
No 58
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=74.50 E-value=23 Score=40.71 Aligned_cols=101 Identities=16% Similarity=-0.099 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHH-----------hhhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFS-----------SILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~Fs-----------S~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
+.....|.++...|+-++|...+.....+. .+-+.-..+.. -.+|.+|.+.+.|+.|..-++.|-++
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667889999999999999998654432 12120002222 23588899999999999888877654
Q ss_pred HHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1137 LVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1137 l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
-.. .+.+...+|++.... ++...|+..|+.++..
T Consensus 173 ~~~--------------~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 173 CVW--------------DAELRELRAECFIKE-----------GEPRKAISDLKAASKL 206 (450)
T ss_dssp CTT--------------CHHHHHHHHHHHHHT-----------TCGGGGHHHHHHHHHH
T ss_pred CCC--------------ChHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHh
Confidence 211 234556677766554 3456788899888764
No 59
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=74.34 E-value=30 Score=33.77 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=78.2
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
...|+.++.-+...|+..+|+.+.+++.++. |.
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------------------~~ 108 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-----------------------------------------------PI 108 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------------------------------------cH
Confidence 4578889999999999999999998887641 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
+ .+.....|.++...|+-.+|..++.....+. |-. ...-..||.+|.+.+.++.
T Consensus 109 ~--------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 109 N--------------------FNVRFRLGVALDNLGRFDEAIDSFKIALGLR-----PNE-GKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp C--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHHH
T ss_pred h--------------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-----ccc-hHHHHHHHHHHHHcCCHHH
Confidence 0 1223567888899999999999998766553 211 2334579999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 000110 1126 AEKELKNAKQILVEKS 1141 (2163)
Q Consensus 1126 Ae~EL~~Ak~~l~~~~ 1141 (2163)
|..-++.|.++-.++.
T Consensus 163 A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 163 ALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCCch
Confidence 9999999988765544
No 60
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=73.89 E-value=7.1 Score=44.31 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccc
Q 000110 1071 LQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCR 1150 (2163)
Q Consensus 1071 lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~ 1150 (2163)
...|.++...|+-+||+..+.-...+. |-...++ ..||.+|.+.+.+|.|..-++.|-++.-+
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------- 337 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLC-----PTHADSL-NNLANIKREQGNIEEAVRLYRKALEVFPE----------- 337 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHC-----TTCHHHH-HHHHHHHHTTTCHHHHHHHHHHHTTSCTT-----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------
Confidence 457888888999999999988665542 3222333 36899999999999998887776543111
Q ss_pred hhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHh
Q 000110 1151 LILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALD 1194 (2163)
Q Consensus 1151 l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAld 1194 (2163)
.......+|.+.... ++...|+..|+.|+.
T Consensus 338 ---~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 338 ---FAAAHSNLASVLQQQ-----------GKLQEALMHYKEAIR 367 (388)
T ss_dssp ---CHHHHHHHHHHHHTT-----------TCCHHHHHHHHHHHT
T ss_pred ---cHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHh
Confidence 133455666665443 456789999999986
No 61
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=72.86 E-value=26 Score=33.33 Aligned_cols=101 Identities=15% Similarity=0.007 Sum_probs=78.7
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
+..|+.++..++..|+..+|+.+..+++.+. |.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------------------------------------~~ 41 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----------------------------------------------PL 41 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----------------------------------------------cC
Confidence 5678999999999999999999999998740 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
+ .+.....|.++...|+-.+|...+.-.-.+... - ...--.||.+|.+.+.|+.
T Consensus 42 ~--------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~ 95 (137)
T 3q49_B 42 V--------------------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ--S----VKAHFFLGQCQLEMESYDE 95 (137)
T ss_dssp C--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHH
T ss_pred c--------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--h----HHHHHHHHHHHHHHhhHHH
Confidence 0 123467799999999999999999876665422 1 2233469999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 000110 1126 AEKELKNAKQILVE 1139 (2163)
Q Consensus 1126 Ae~EL~~Ak~~l~~ 1139 (2163)
|..-++.|-++-.+
T Consensus 96 A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 96 AIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHChh
Confidence 99999999887655
No 62
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=72.48 E-value=15 Score=36.83 Aligned_cols=104 Identities=10% Similarity=-0.061 Sum_probs=79.6
Q ss_pred ehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeecc
Q 000110 965 VGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWS 1044 (2163)
Q Consensus 965 a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~ 1044 (2163)
-+..|+.++..++..|+..+|+.+-.+++++. |
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------------------------------p 42 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----------------------------------------------P 42 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------------------------------------T
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------------------------------C
Confidence 35678999999999999999999999998741 0
Q ss_pred CCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchH
Q 000110 1045 FDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWD 1124 (2163)
Q Consensus 1045 ~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd 1124 (2163)
. ..+.....|.++-..|+-.+|+..+...-.+.-. ...+ =-.||.+|.+.+.++
T Consensus 43 ~--------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~-~~~lg~~~~~~g~~~ 96 (164)
T 3sz7_A 43 A--------------------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-----YSKA-WSRLGLARFDMADYK 96 (164)
T ss_dssp T--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHH-HHHHHHHHHHTTCHH
T ss_pred c--------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CHHH-HHHHHHHHHHccCHH
Confidence 0 0133457899999999999999999876665422 2222 246899999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 000110 1125 QAEKELKNAKQILVEKS 1141 (2163)
Q Consensus 1125 ~Ae~EL~~Ak~~l~~~~ 1141 (2163)
.|..-++.|-++--++.
T Consensus 97 ~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 97 GAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHhCCCch
Confidence 99999999887754443
No 63
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=72.48 E-value=60 Score=35.34 Aligned_cols=101 Identities=13% Similarity=-0.113 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcChhhHHHHhhhcccccccc-CCcchhhHH--------HhhhhHHHHhhhchHHHHHHHHHHHHHHHhc
Q 000110 1070 VLQVGIIHELVGNGVEAEAFLLWGKSISCTQ-SLPQFIVAF--------SSILGKLYRKKQLWDQAEKELKNAKQILVEK 1140 (2163)
Q Consensus 1070 ~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q-~Lp~f~v~F--------sS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~ 1140 (2163)
....|.++...|+-.+|...+.....+.-.. +-|-..... --.+|.+|.+.+.++.|...++.|-++-.++
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 4678999999999999999998776553200 111111111 1224899999999999999988876642221
Q ss_pred cccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1141 SINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1141 ~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
..+...+|++.... ++...|+..|+.++..
T Consensus 154 --------------~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~~~ 183 (359)
T 3ieg_A 154 --------------AELRELRAECFIKE-----------GEPRKAISDLKAASKL 183 (359)
T ss_dssp --------------HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHTT
T ss_pred --------------hHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHh
Confidence 23455666665544 4566799999998864
No 64
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=72.21 E-value=11 Score=42.20 Aligned_cols=102 Identities=17% Similarity=0.056 Sum_probs=79.3
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
...|+.|+.-+...|+..+|+.+.++++++. |.
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------------------------------p~ 245 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-----------------------------------------------PE 245 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------------------------CC
Confidence 4578899999999999999999999988652 10
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
+ .+.....|.++...|+-.+|+..+.-.-.+. |-. ...-..||.+|.+.+.++.
T Consensus 246 ~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 246 D--------------------YSLWNRLGATLANGDRSEEAVEAYTRALEIQ-----PGF-IRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp C--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHHTCCHH
T ss_pred C--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCc-hHHHHHHHHHHHHCCCHHH
Confidence 0 1234677899999999999999998766553 222 2233469999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 000110 1126 AEKELKNAKQILVEK 1140 (2163)
Q Consensus 1126 Ae~EL~~Ak~~l~~~ 1140 (2163)
|..-++.|-++-.+.
T Consensus 300 A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 300 AVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCccc
Confidence 999999998887653
No 65
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=72.18 E-value=17 Score=38.54 Aligned_cols=133 Identities=13% Similarity=-0.016 Sum_probs=92.1
Q ss_pred HHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCCC
Q 000110 968 LYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFDA 1047 (2163)
Q Consensus 968 LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~~ 1047 (2163)
.+|.++..++..|+..+|+.+..+++++. |.+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----------------------------------------------p~~- 36 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-----------------------------------------------YNS- 36 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-----------------------------------------------CCC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------------------------------CCc-
Confidence 46788999999999999999999886430 000
Q ss_pred CCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHH
Q 000110 1048 SSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAE 1127 (2163)
Q Consensus 1048 ~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae 1127 (2163)
| +.....|.++...|+=.+|...+.-..... .-|-+....-..||.+|.+.+.++.|.
T Consensus 37 -----------~--------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 37 -----------P--------YIYNRRAVCYYELAKYDLAQKDIETYFSKV---NATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp -----------S--------TTHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------H--------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 0 023456778888899999999888766533 233333333367899999999999999
Q ss_pred HHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1128 KELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1128 ~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.-++.|-++-.+ ...+...+|++.... ++...|+..|+.|++.
T Consensus 95 ~~~~~a~~~~~~--------------~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 95 QQYQAAVDRDTT--------------RLDMYGQIGSYFYNK-----------GNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHSTT--------------CTHHHHHHHHHHHHT-----------TCHHHHHHHHGGGCCS
T ss_pred HHHHHHHhcCcc--------------cHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHhhc
Confidence 888887764222 123455667666544 4566788888888765
No 66
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=72.08 E-value=15 Score=40.83 Aligned_cols=112 Identities=9% Similarity=-0.094 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccc
Q 000110 1066 YLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLS 1145 (2163)
Q Consensus 1066 YlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~ 1145 (2163)
|++-...+|.++-.-|+-.+|..++.-...+....+=+...+..-..||.+|.+.+.+|.|..-++.|-+++.+...
T Consensus 114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--- 190 (293)
T 3u3w_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--- 190 (293)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC---
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc---
Confidence 45555567888876777799999998877765544444444555678999999999999999999999998876522
Q ss_pred ccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1146 CLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1146 C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.....+.+...+|.+.... ++...|+..|+.||+-
T Consensus 191 ----~~~~~~~~~~nlg~~y~~~-----------~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 191 ----NEEFDVKVRYNHAKALYLD-----------SRYEESLYQVNKAIEI 225 (293)
T ss_dssp ----CHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred ----chhHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHH
Confidence 2235566777888777665 4567799999988764
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=70.49 E-value=13 Score=48.31 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=26.6
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHH
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLR 996 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr 996 (2163)
-.|+.|+.-+...|++.||+.+-++|+++.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~ 39 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF 39 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 468899999999999999999999998763
No 68
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.37 E-value=20 Score=41.15 Aligned_cols=211 Identities=9% Similarity=0.038 Sum_probs=126.5
Q ss_pred HHHHHhhccCCCCCCceeeehh----------HHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccc
Q 000110 946 EAASELISSVPVTPRSVFLVGY----------LYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEY 1015 (2163)
Q Consensus 946 ~aA~~lis~~p~~~~s~f~a~~----------LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~ 1015 (2163)
+.-.+++...|.........+. .++.|++-....|+..+|+++=+++..++.++=+.+..-.+...-+.-
T Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (434)
T 4b4t_Q 25 QVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKF 104 (434)
T ss_dssp HHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 3334455555655554444433 256788888999999999999999988887653332211111000000
Q ss_pred -cccccccccccCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcc
Q 000110 1016 -NDAGDISQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGK 1094 (2163)
Q Consensus 1016 -~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk 1094 (2163)
...|... .-++.+. .+.++-+.. .+-++ +.......|.+++-.|+=.+|..++..-.
T Consensus 105 ~~~~~~~~-------~a~~~~~-~~~~~~~~~------~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 105 EQVPDSLD-------DQIFVCE-KSIEFAKRE------KRVFL--------KHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp CSCCSCHH-------HHHHHHH-HHHHHHHHS------SCCSS--------HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCCHH-------HHHHHHH-HHHHHHHHh------CccHH--------HHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 0000000 0001110 011111111 11111 12344567999999999999999987654
Q ss_pred ccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCC
Q 000110 1095 SISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDR 1174 (2163)
Q Consensus 1095 ~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~ 1174 (2163)
.+....+=....+.+=-.+|++|...+.|+.|..-++.|..+..... +-..+...++.++|.+....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~~g~~~~~~------ 229 (434)
T 4b4t_Q 163 REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-------CPTQTVAELDLMSGILHCED------ 229 (434)
T ss_dssp HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-------CCHHHHHHHHHHHHHHTTSS------
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-------CchHHHHHHHHHHHHHHHHH------
Confidence 44333333445666777899999999999999999999988765532 23345677888889887665
Q ss_pred CCcchhhhhhHHHHHHHHHhcc
Q 000110 1175 GNTLIERLSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1175 ~~~~~~~l~~A~~~Y~sAldKl 1196 (2163)
++...|.+.|..|++..
T Consensus 230 -----~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 230 -----KDYKTAFSYFFESFESY 246 (434)
T ss_dssp -----SCHHHHHHHHHHHHHHH
T ss_pred -----HhHHHHHHHHHHHHHHh
Confidence 34557888888887653
No 69
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=69.95 E-value=25 Score=37.12 Aligned_cols=121 Identities=16% Similarity=-0.089 Sum_probs=87.3
Q ss_pred HHhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeecccccccccccc
Q 000110 941 IHDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGD 1020 (2163)
Q Consensus 941 ~~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~ 1020 (2163)
.++..+...+.+...|.++ ---+..|+.++..+...|+..+|+.+.+++..+.
T Consensus 21 ~~~A~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------------ 73 (275)
T 1xnf_A 21 QEVILARMEQILASRALTD---DERAQLLYERGVLYDSLGLRALARNDFSQALAIR------------------------ 73 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHhcccccC---chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC------------------------
Confidence 4555555555565554322 1235688999999999999999999999998760
Q ss_pred ccccccCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcccccccc
Q 000110 1021 ISQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQ 1100 (2163)
Q Consensus 1021 ~s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q 1100 (2163)
|. +.+.....|.++...|+=.+|..++.-...+.-.
T Consensus 74 -----------------------~~--------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~- 109 (275)
T 1xnf_A 74 -----------------------PD--------------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT- 109 (275)
T ss_dssp -----------------------CC--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred -----------------------CC--------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-
Confidence 00 0123356789999999999999999877665322
Q ss_pred CCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHH
Q 000110 1101 SLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQIL 1137 (2163)
Q Consensus 1101 ~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l 1137 (2163)
-+ ..-..||.+|.+.+.++.|..-++.|-++-
T Consensus 110 -~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 110 -YN----YAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp -CT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -cc----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 22 233478999999999999999998887753
No 70
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=69.66 E-value=27 Score=42.60 Aligned_cols=135 Identities=16% Similarity=0.096 Sum_probs=97.0
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
...|+.|+.-+...|++.+|+.+..+|+++. |.
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------------------------------p~ 55 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALH-----------------------------------------------PG 55 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-----------------------------------------------TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------------------------------CC
Confidence 4678999999999999999999999888630 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
+.+.....|.++...|+-+||+..+.-.-.+.-. -+ ..--.||.+|.+.+.+|.
T Consensus 56 --------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~~ 109 (568)
T 2vsy_A 56 --------------------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE--HP----GIALWLGHALEDAGQAEA 109 (568)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHH
T ss_pred --------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHcCCHHH
Confidence 0223467899999999999999999876655322 11 223469999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1126 AEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1126 Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
|...++.|-++--++ ..+...+|.+.... . ..++...|+..|+.|++.
T Consensus 110 A~~~~~~al~~~p~~--------------~~~~~~l~~~~~~~---~-----~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 110 AAAAYTRAHQLLPEE--------------PYITAQLLNWRRRL---C-----DWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHT---T-----CCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHh---h-----ccccHHHHHHHHHHHHhc
Confidence 999998887663221 23445556555443 1 125567899999999875
No 71
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=69.11 E-value=13 Score=41.72 Aligned_cols=105 Identities=15% Similarity=0.084 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccc
Q 000110 1071 LQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCR 1150 (2163)
Q Consensus 1071 lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~ 1150 (2163)
-|.|.++-..|+=.+|...+.+.-.+....+-|.-.+..=.-+|.+|.+.+.|+.|..-++.|-++..+....
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~------- 112 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP------- 112 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH-------
Confidence 4668999999999999999999888876666565555555678999999999999999999999987654322
Q ss_pred hhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1151 LILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1151 l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
...+.....+|.+... ++...|+..|+.||+-
T Consensus 113 -~~~a~~~~~lg~~~~~------------g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 113 -DTAAMALDRAGKLMEP------------LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp -HHHHHHHHHHHHHHTT------------TCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHH
Confidence 1223444556655421 4677899999999874
No 72
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=68.52 E-value=29 Score=34.07 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccc
Q 000110 1069 SVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLK 1148 (2163)
Q Consensus 1069 S~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~ 1148 (2163)
.--+.|..+-.-|+=.||..++.-.-.+. |-...++ .-+|.+|.+.+.|+.|..-++.|-++-.++...+.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-----p~~~~~~-~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--- 80 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-----PSNITFY-NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK--- 80 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHH-HhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH---
Confidence 34467999999999999999987654442 3333444 46899999999999999999999887766544331
Q ss_pred cchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHh
Q 000110 1149 CRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALD 1194 (2163)
Q Consensus 1149 C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAld 1194 (2163)
.-+.+..++|+..... +++..|+..|+.||.
T Consensus 81 ----~~a~~~~~lg~~~~~~-----------~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 81 ----LIAKAMSRAGNAFQKQ-----------NDLSLAVQWFHRSLS 111 (127)
T ss_dssp ----HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHh
Confidence 2234566777766555 467789999999986
No 73
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=67.89 E-value=16 Score=44.65 Aligned_cols=121 Identities=13% Similarity=0.045 Sum_probs=79.3
Q ss_pred cchhhH---HHHHHHHHHHHHHHHhcChhhHHHHhhhccccccc--cCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHH
Q 000110 1059 PWNVLQ---CYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCT--QSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNA 1133 (2163)
Q Consensus 1059 pW~vL~---cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~--q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~A 1133 (2163)
.|..++ +|....++-+--.+.-|+=+||+.++.--.+|... ..-=+..+.-=..||.+|..+|.||.|+.=.+.|
T Consensus 287 ~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 287 QAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 344444 34445555565666678889999988765555321 1111233344456999999999999999999998
Q ss_pred HHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhcc
Q 000110 1134 KQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1134 k~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKl 1196 (2163)
-++.+.--.... ---++....||.+.++. |+...|+.+|+.||+-+
T Consensus 367 L~i~~~~lG~~H------p~~a~~l~nLa~~~~~q-----------g~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 367 IKPYSKHYPVYS------LNVASMWLKLGRLYMGL-----------ENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHSCSSC------HHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC------hHHHHHHHHHHHHHHhc-----------cCHHHHHHHHHHHHHHH
Confidence 888775322211 12234455778887776 45678999999998754
No 74
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=67.27 E-value=30 Score=31.53 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=73.4
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
+..||.++..+...|+..+|+.+..++.++. |.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------------------~~ 41 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----------------------------------------------PN 41 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------------------------------------------cC
Confidence 5678999999999999999999998886430 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
+ .+.....|.++...|+-.+|..++...-.+.-. -| ..-..||.+|.+.+.++.
T Consensus 42 ~--------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~la~~~~~~~~~~~ 95 (125)
T 1na0_A 42 N--------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NA----EAWYNLGNAYYKQGDYDE 95 (125)
T ss_dssp C--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHH
T ss_pred c--------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cH----HHHHHHHHHHHHhcCHHH
Confidence 0 112356788899999999999999887655321 11 122478999999999999
Q ss_pred HHHHHHHHHHH
Q 000110 1126 AEKELKNAKQI 1136 (2163)
Q Consensus 1126 Ae~EL~~Ak~~ 1136 (2163)
|..-++.|-++
T Consensus 96 A~~~~~~~~~~ 106 (125)
T 1na0_A 96 AIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888877654
No 75
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=66.72 E-value=10 Score=34.12 Aligned_cols=97 Identities=15% Similarity=-0.034 Sum_probs=70.4
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
..|+.++..+...|+..+|+.+.+++.++. |.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------------------------------------------~~~ 39 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-----------------------------------------------PEE 39 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-----------------------------------------------CCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----------------------------------------------cCC
Confidence 346677888889999999999998887542 100
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhh-hchHH
Q 000110 1047 ASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKK-QLWDQ 1125 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk-~~Wd~ 1125 (2163)
.+.....|.++-..|+=++|...+.-...+.-. -.-...--.||.+|.+. +.++.
T Consensus 40 --------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~ 95 (112)
T 2kck_A 40 --------------------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYNKDVWAAKADALRYIEGKEVE 95 (112)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTCHHHHHHHHHHHTTCSSCSHH
T ss_pred --------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cchHHHHHHHHHHHHHHhCCHHH
Confidence 122357899999999999999999876655322 01123345799999999 99999
Q ss_pred HHHHHHHHH
Q 000110 1126 AEKELKNAK 1134 (2163)
Q Consensus 1126 Ae~EL~~Ak 1134 (2163)
|.+-++.+-
T Consensus 96 A~~~~~~~~ 104 (112)
T 2kck_A 96 AEIAEARAK 104 (112)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHHh
Confidence 988776653
No 76
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=66.61 E-value=18 Score=41.91 Aligned_cols=137 Identities=14% Similarity=0.020 Sum_probs=94.7
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
..|+.++.-+...|+..+|+.+-+++..+.. .
T Consensus 339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------------------------------------~- 370 (514)
T 2gw1_A 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFP-----------------------------------------------E- 370 (514)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-----------------------------------------------T-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-----------------------------------------------c-
Confidence 4778888888999999999998888764300 0
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHh---hhch
Q 000110 1047 ASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRK---KQLW 1123 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~k---k~~W 1123 (2163)
+| +.....|.++...|+-.+|+..+.-...+.-...-....+..-..+|.+|.+ .+.+
T Consensus 371 -----------~~--------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 371 -----------AP--------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp -----------CS--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred -----------CH--------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 00 1234568899999999999999987665544332222223344678999999 9999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1124 DQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1124 d~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
+.|..-++.|-++-.++ ......+|.+.... ++...|...|+.|++.
T Consensus 432 ~~A~~~~~~a~~~~~~~--------------~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRS--------------EQAKIGLAQMKLQQ-----------EDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccc--------------HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHh
Confidence 99999998887652211 23345566655544 4556788888888764
No 77
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=66.41 E-value=35 Score=37.86 Aligned_cols=145 Identities=13% Similarity=-0.036 Sum_probs=98.3
Q ss_pred ehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeecc
Q 000110 965 VGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWS 1044 (2163)
Q Consensus 965 a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~ 1044 (2163)
-...|+.|+.-+...|+..+|+.+-.++..+. |
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------------------------------~ 248 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-----------------------------------------------P 248 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------T
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------------------------------c
Confidence 35678899999999999999999999887641 0
Q ss_pred CCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchH
Q 000110 1045 FDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWD 1124 (2163)
Q Consensus 1045 ~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd 1124 (2163)
.+ .+.....|.++...|+-.+|+..+.-...+. |-.. ..-..||.+|.+.+.|+
T Consensus 249 ~~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~-~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 249 ND--------------------YLLWNKLGATLANGNQSEEAVAAYRRALELQ-----PGYI-RSRYNLGISCINLGAHR 302 (368)
T ss_dssp TC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHHHHHHHHHHHTCHH
T ss_pred CC--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcH-HHHHHHHHHHHHCCCHH
Confidence 00 1234667999999999999999998766553 2222 23357999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhcc
Q 000110 1125 QAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1125 ~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKl 1196 (2163)
.|..-++.|-++-.++.....= .......+...+|+..... ++...|...|+.+|+.+
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGE---GGAMSENIWSTLRLALSML-----------GQSDAYGAADARDLSTL 360 (368)
T ss_dssp HHHHHHHHHHHHHHTC---------CCCCCHHHHHHHHHHHHHH-----------TCGGGHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccc---ccchhhHHHHHHHHHHHHh-----------CChHhHHHhHHHHHHHH
Confidence 9999999998876654111000 0001134455666665544 34456777777766654
No 78
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=65.28 E-value=46 Score=34.95 Aligned_cols=99 Identities=13% Similarity=-0.045 Sum_probs=74.4
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
...|+.++.-++..|+..+|+.+.+++.++. |.
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----------------------------------------------~~ 173 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-----------------------------------------------RN 173 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------SC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------------------------------cc
Confidence 4567888999999999999999998887640 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
. .+.....|.++...|+-.+|..++.-...+. |-. ...-..+|.+|.+.+.++.
T Consensus 174 ~--------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 174 Q--------------------PSVALEMADLLYKEREYVPARQYYDLFAQGG-----GQN-ARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp C--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----CCC-HHHHHHHHHHHHHTTCHHH
T ss_pred c--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCc-HHHHHHHHHHHHHccCHHH
Confidence 0 1334577889999999999999998765432 222 2233578999999999999
Q ss_pred HHHHHHHHHHHH
Q 000110 1126 AEKELKNAKQIL 1137 (2163)
Q Consensus 1126 Ae~EL~~Ak~~l 1137 (2163)
|..-++.|.++-
T Consensus 228 A~~~~~~~~~~~ 239 (252)
T 2ho1_A 228 AASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC
Confidence 999998887654
No 79
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=64.97 E-value=22 Score=33.18 Aligned_cols=97 Identities=15% Similarity=0.004 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccccc
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCL 1147 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~ 1147 (2163)
+...+.|.++...|+-.+|...+.....+.-. . .-.-..+|.+|.+.+.|+.|..-++.|-++-.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------- 82 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-----D-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-------- 82 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-----C-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----c-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------
Confidence 45567899999999999999999876654321 1 223356899999999999999988887765221
Q ss_pred ccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1148 KCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1148 ~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
...+...+|.+.... ++...|+..|+.++..
T Consensus 83 ------~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 83 ------FIKGYTRKAAALEAM-----------KDYTKAMDVYQKALDL 113 (133)
T ss_dssp ------CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHh
Confidence 234556667665544 3566799999998764
No 80
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=64.41 E-value=35 Score=32.49 Aligned_cols=99 Identities=10% Similarity=-0.157 Sum_probs=76.4
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
+..|+.++..++..|+..+|+.+-.+++++. |.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------------------------------------p~ 36 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----------------------------------------------PE 36 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------------------------------CC
Confidence 3468899999999999999999999988751 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
+ .+.....|.++...|+-.+|...+.-.-.+.-. ..- .=-.+|.+|.+.+.++.
T Consensus 37 ~--------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~-~~~~lg~~~~~~~~~~~ 90 (126)
T 3upv_A 37 D--------------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-----FVR-AYIRKATAQIAVKEYAS 90 (126)
T ss_dssp C--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHH-HHHHHHHHHHHTTCHHH
T ss_pred C--------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----cHH-HHHHHHHHHHHHhCHHH
Confidence 0 133567899999999999999999876555322 222 22368999999999999
Q ss_pred HHHHHHHHHHHH
Q 000110 1126 AEKELKNAKQIL 1137 (2163)
Q Consensus 1126 Ae~EL~~Ak~~l 1137 (2163)
|...++.|-++-
T Consensus 91 A~~~~~~al~~~ 102 (126)
T 3upv_A 91 ALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999888765
No 81
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=64.01 E-value=37 Score=31.22 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccccc
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCL 1147 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~ 1147 (2163)
+.....|.++-..|+=.+|..++...-.+. |-.. ..--.+|.+|.+.+.|+.|..-++.|-++-.++....
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--- 75 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-----PTNM-TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY--- 75 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CccH-HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH---
Confidence 456788999999999999999998765543 2111 2234689999999999999999999988776543221
Q ss_pred ccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1148 KCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1148 ~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.....+...+|...... ++...|...|+.+++.
T Consensus 76 ----~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 76 ----RQIAKAYARIGNSYFKE-----------EKYKDAIHFYNKSLAE 108 (131)
T ss_dssp ----HHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHh
Confidence 11134456667665544 3566799999998874
No 82
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=63.65 E-value=26 Score=31.64 Aligned_cols=97 Identities=14% Similarity=0.038 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccccc
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCL 1147 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~ 1147 (2163)
+...+.|.++...|+-.+|..++.-...+.-. - ...-..+|.+|.+.+.|+.|..-++.|-++-..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------- 70 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH--N----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-------- 70 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--c----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--------
Confidence 45678899999999999999999876655321 1 233456899999999999999888877665221
Q ss_pred ccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1148 KCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1148 ~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
...+...+|.+.... ++...|...|+.+++.
T Consensus 71 ------~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 71 ------WGKGYSRKAAALEFL-----------NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp ------CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHTT
T ss_pred ------cHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHc
Confidence 123455666665544 3466799999988864
No 83
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=63.21 E-value=41 Score=36.32 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHH----hcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHh----hhchHHHHHHHHHHHHHHH
Q 000110 1067 LESVLQVGIIHEL----VGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRK----KQLWDQAEKELKNAKQILV 1138 (2163)
Q Consensus 1067 lES~lQvg~ihE~----iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~k----k~~Wd~Ae~EL~~Ak~~l~ 1138 (2163)
.+.....|.++.. .|+-.+|..++.-.-.. +-|. --.-||.+|.+ .+.++.|..-++.|-+.
T Consensus 110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~----a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-- 179 (273)
T 1ouv_A 110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----NDGD----GCTILGSLYDAGRGTPKDLKKALASYDKACDL-- 179 (273)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----CcHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 3566667777776 67777777666644332 2111 12346777776 66777776666665432
Q ss_pred hccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1139 EKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1139 ~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
........+|.+...- ....++...|+.+|+.|++.
T Consensus 180 --------------~~~~a~~~lg~~~~~g-------~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 180 --------------KDSPGCFNAGNMYHHG-------EGATKNFKEALARYSKACEL 215 (273)
T ss_dssp --------------TCHHHHHHHHHHHHHT-------CSSCCCHHHHHHHHHHHHHT
T ss_pred --------------CCHHHHHHHHHHHHcC-------CCCCccHHHHHHHHHHHHhC
Confidence 1234555666655443 22346666777777777654
No 84
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=62.47 E-value=41 Score=38.13 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=25.0
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHH
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRL 995 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~L 995 (2163)
...|+.|+..+...|++.+|+.+-.+++++
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456788888889999999999998888754
No 85
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=61.63 E-value=22 Score=44.26 Aligned_cols=112 Identities=11% Similarity=0.007 Sum_probs=81.1
Q ss_pred HHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCCCC
Q 000110 969 YYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFDAS 1048 (2163)
Q Consensus 969 yydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~~~ 1048 (2163)
..+-++.+.+.|+..+|+.+.++|+.+|.+.|-..
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~--------------------------------------------- 346 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT--------------------------------------------- 346 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT---------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC---------------------------------------------
Confidence 34567788999999999999999998876543111
Q ss_pred CCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccc---cCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1049 SWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCT---QSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1049 ~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~---q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
.| ..+.+.-..|.++--.|+=+||+.++.---+|-.. .+=|- ...-=.-||.+|..+|.||.
T Consensus 347 ---------Hp-----~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~nLa~~~~~~G~~~e 411 (490)
T 3n71_A 347 ---------NL-----YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ-LGMAVMRAGLTNWHAGHIEV 411 (490)
T ss_dssp ---------SH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH-HHHHHHHHHHHHHHTTCHHH
T ss_pred ---------CH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHCCCHHH
Confidence 11 14566667888899999999999988754444211 11122 22223469999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 000110 1126 AEKELKNAKQILVEK 1140 (2163)
Q Consensus 1126 Ae~EL~~Ak~~l~~~ 1140 (2163)
|+.-++.|-+|++..
T Consensus 412 A~~~~~~Al~i~~~~ 426 (490)
T 3n71_A 412 GHGMICKAYAILLVT 426 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 86
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=61.37 E-value=40 Score=34.07 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=74.7
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
-.+|.++..++..|+..+|+.+-.++..+.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------------- 51 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------------------------------------------------- 51 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------------------------------------------
Confidence 357889999999999999999888776430
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHH
Q 000110 1047 ASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQA 1126 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~A 1126 (2163)
|.+ -+-....|.++...|+-+||...++..-.+.- +-|.. ---||.+|.+.+.++.|
T Consensus 52 ------------p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~----~~~lg~~~~~~g~~~~A 108 (148)
T 2vgx_A 52 ------------HYD-----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--XEPRF----PFHAAECLLQXGELAEA 108 (148)
T ss_dssp ------------TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHH----HHHHHHHHHHTTCHHHH
T ss_pred ------------ccc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchH----HHHHHHHHHHcCCHHHH
Confidence 000 01224679999999999999999987655532 22222 23589999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 000110 1127 EKELKNAKQILVEK 1140 (2163)
Q Consensus 1127 e~EL~~Ak~~l~~~ 1140 (2163)
...++.|-++--++
T Consensus 109 ~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 109 ESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCcCC
Confidence 99999887765543
No 87
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=60.45 E-value=26 Score=34.04 Aligned_cols=98 Identities=8% Similarity=-0.023 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccc
Q 000110 1067 LESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSC 1146 (2163)
Q Consensus 1067 lES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C 1146 (2163)
.+...+.|.++-..|+=.+|...+.....+.-. . ...-..+|.+|.+.+.|+.|..-++.|-++-.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------ 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-----N-AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------ 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------
Confidence 466788999999999999999999877655321 1 2334578999999999999999888887763221
Q ss_pred cccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1147 LKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1147 ~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
..+...+|.+.... ++...|...|+.|+..
T Consensus 81 --------~~~~~~~a~~~~~~-----------~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 81 --------IKGYYRRAASNMAL-----------GKFRAALRDYETVVKV 110 (166)
T ss_dssp --------HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHh
Confidence 23445666655544 3456788888887754
No 88
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=59.83 E-value=28 Score=33.13 Aligned_cols=97 Identities=16% Similarity=0.020 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccccc
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCL 1147 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~ 1147 (2163)
+...+.|.++-..|+=.+|+..+.-.-.+.- +- ..+-..||.+|.+.+.|+.|..-++.|-++-.+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-------- 75 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNP--LV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ-------- 75 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--Cc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--------
Confidence 5567889999999999999999886655432 22 234457899999999999999888877665322
Q ss_pred ccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1148 KCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1148 ~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
...+...+|.+.... ++...|+..|+.|++.
T Consensus 76 ------~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 76 ------SVKAHFFLGQCQLEM-----------ESYDEAIANLQRAYSL 106 (137)
T ss_dssp ------CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHH
Confidence 234566677766555 3456789999988764
No 89
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=59.53 E-value=26 Score=35.15 Aligned_cols=98 Identities=12% Similarity=0.040 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccc
Q 000110 1067 LESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSC 1146 (2163)
Q Consensus 1067 lES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C 1146 (2163)
.+...+.|.++-..|+=.+|..++...-.+.-. . ...-..||.+|.+.+.|+.|..-++.|-++--++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------ 78 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-----N-PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY------ 78 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----C-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Confidence 355678899999999999999999876555422 1 2334568999999999999999888877653221
Q ss_pred cccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1147 LKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1147 ~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
..+...+|.+.... ++...|+..|+.|+..
T Consensus 79 --------~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 79 --------SKAWSRLGLARFDM-----------ADYKGAKEAYEKGIEA 108 (164)
T ss_dssp --------HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHh
Confidence 44566777776555 4566788888888764
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=59.06 E-value=1.1e+02 Score=27.93 Aligned_cols=98 Identities=20% Similarity=0.180 Sum_probs=71.0
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
...|+.++..+...|+..+|+.+.+++.++. |.
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------------------~~ 67 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----------------------------------------------PR 67 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----------------------------------------------CC
Confidence 4578889999999999999999988876430 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
. .+.....|.++...|+-.+|..++.....+.. -.. ..-..+|.+|.+.+.++.
T Consensus 68 ~--------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~-~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 68 S--------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----RSA-EAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp C--------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----TCH-HHHHHHHHHHHTTTCHHH
T ss_pred c--------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CCh-HHHHHHHHHHHHHccHHH
Confidence 0 01224568888889999999999987665432 111 122468999999999999
Q ss_pred HHHHHHHHHHH
Q 000110 1126 AEKELKNAKQI 1136 (2163)
Q Consensus 1126 Ae~EL~~Ak~~ 1136 (2163)
|..-++.|-++
T Consensus 122 A~~~~~~~~~~ 132 (136)
T 2fo7_A 122 AIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 99988877553
No 91
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=58.84 E-value=82 Score=33.97 Aligned_cols=162 Identities=15% Similarity=0.053 Sum_probs=101.9
Q ss_pred HhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccc
Q 000110 942 HDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDI 1021 (2163)
Q Consensus 942 ~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~ 1021 (2163)
++..+...+.+...|. -...++.|+.-+...|+..+|+.+.+++.++.
T Consensus 155 ~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------------- 202 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-------DAQLHASLGVLYNLSNNYDSAAANLRRAVELR------------------------- 202 (327)
T ss_dssp HHHHHHHHHHHHHSTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------------------------
Confidence 4444444444554554 25788999999999999999999999987630
Q ss_pred cccccCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccC
Q 000110 1022 SQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQS 1101 (2163)
Q Consensus 1022 s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~ 1101 (2163)
|.+ .+.....|.++...|+-.+|...+.-...+.
T Consensus 203 ----------------------~~~--------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---- 236 (327)
T 3cv0_A 203 ----------------------PDD--------------------AQLWNKLGATLANGNRPQEALDAYNRALDIN---- 236 (327)
T ss_dssp ----------------------TTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred ----------------------CCc--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Confidence 000 1234577889999999999999998765543
Q ss_pred CcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhh
Q 000110 1102 LPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIER 1181 (2163)
Q Consensus 1102 Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~ 1181 (2163)
|-... .-..||.+|.+.+.|+.|.+-++.|-++-.+...... .-.......+...+|.+.... ++
T Consensus 237 -~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-----------g~ 301 (327)
T 3cv0_A 237 -PGYVR-VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG--EASREATRSMWDFFRMLLNVM-----------NR 301 (327)
T ss_dssp -TTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-------CCTHHHHHHHHHHHHHHHT-----------TC
T ss_pred -CCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc--cchhhcCHHHHHHHHHHHHhc-----------CC
Confidence 22222 2347999999999999999999988876544211100 000111233444555554443 33
Q ss_pred hhhHHHHHHHHHhcc
Q 000110 1182 LSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1182 l~~A~~~Y~sAldKl 1196 (2163)
...|...|+.|++.+
T Consensus 302 ~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 302 PDLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHHTTCCSHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 456777776665543
No 92
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=58.80 E-value=33 Score=36.50 Aligned_cols=155 Identities=23% Similarity=0.211 Sum_probs=100.1
Q ss_pred HHHhccccchhhhhhhhccCCcccchhhhhhhhhhhccCCCCccccCCCCcccccHHhHHHHHHHhhccCCCCCCceeee
Q 000110 886 AEQCGELSKSIEFWMGCLQGSQPLLVGFQQSLLFLFANSSHGCYISKSSVQPCITIHDVKEAASELISSVPVTPRSVFLV 965 (2163)
Q Consensus 886 ~~~~g~~~~~~~fw~~~~~~~~~~~v~~q~~~~~l~~~~~~~~~~~~~~f~~~~~~~~v~~aA~~lis~~p~~~~s~f~a 965 (2163)
.-.-|+...++.....-++..|...- ...+...+... .+ + .++-.+...+.+.--|.+..
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~--------~g----~--~~~A~~~~~~al~~~P~~~~----- 74 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKENPQDPE-ALYWLARTQLK--------LG----L--VNPALENGKTLVARTPRYLG----- 74 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHH-HHHHHHHHHHH--------TT----C--HHHHHHHHHHHHHHCTTCHH-----
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHH--------cC----C--HHHHHHHHHHHHHhCCCcHH-----
Confidence 34557777777777777776665432 22222222221 01 1 24444444445555565433
Q ss_pred hhHHHHhHHHHHhc-----------chHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCcccc
Q 000110 966 GYLYYDLCERLIAN-----------GRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKP 1034 (2163)
Q Consensus 966 ~~LyydL~erl~~~-----------G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 1034 (2163)
.|+.|+.-+... |+..+|+.+-.+++++.
T Consensus 75 --a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------------------------------------- 114 (217)
T 2pl2_A 75 --GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-------------------------------------- 114 (217)
T ss_dssp --HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------------------------------------
T ss_pred --HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------------------------------------
Confidence 455666666666 99999999888887761
Q ss_pred ccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhh
Q 000110 1035 SSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILG 1114 (2163)
Q Consensus 1035 ~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG 1114 (2163)
|. +.+.....|.++...|+-+||+..++-.-.+. +-|.. -..||
T Consensus 115 ---------P~--------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~----~~~la 158 (217)
T 2pl2_A 115 ---------PR--------------------YAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEI----RSALA 158 (217)
T ss_dssp ---------TT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHH----HHHHH
T ss_pred ---------cc--------------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHH----HHHHH
Confidence 10 11223567999999999999999999877776 33322 24799
Q ss_pred HHHHhhhchHHHHHHHHHHHHH
Q 000110 1115 KLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1115 ~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
.+|.+.+.+|.|...++.|-++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999888665
No 93
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=58.78 E-value=68 Score=28.87 Aligned_cols=98 Identities=10% Similarity=-0.067 Sum_probs=72.7
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
...|+.++..+...|+..+|+.+-.++..+. |.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------------------~~ 36 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----------------------------------------------PH 36 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----------------------------------------------CC
Confidence 3468899999999999999999988886520 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
+ .+.....|.++...|+=.+|...+.-.-.+.. +- ...--.+|.+|.+.+.++.
T Consensus 37 ~--------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~~a~~~~~~~~~~~ 90 (118)
T 1elw_A 37 N--------------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DW----GKGYSRKAAALEFLNRFEE 90 (118)
T ss_dssp C--------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHTTCHHH
T ss_pred c--------------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--cc----HHHHHHHHHHHHHHhhHHH
Confidence 0 23456678888889999999998887655432 11 1223478999999999999
Q ss_pred HHHHHHHHHHH
Q 000110 1126 AEKELKNAKQI 1136 (2163)
Q Consensus 1126 Ae~EL~~Ak~~ 1136 (2163)
|..-++.|-++
T Consensus 91 A~~~~~~~~~~ 101 (118)
T 1elw_A 91 AKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHc
Confidence 99988877553
No 94
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=58.36 E-value=32 Score=32.75 Aligned_cols=97 Identities=11% Similarity=-0.155 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccccc
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCL 1147 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~ 1147 (2163)
+...+.|..+-..|+=.+|...+.-.-.+.- + . ...-..+|.+|.+.+.|+.|...++.|-++--++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~---~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------- 71 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--E---D-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------- 71 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--C---C-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-------
Confidence 4567889999999999999999986655432 2 1 2344578999999999999999888876652211
Q ss_pred ccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1148 KCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1148 ~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
......+|.+.... ++...|+..|+.|+..
T Consensus 72 -------~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 72 -------VRAYIRKATAQIAV-----------KEYASALETLDAARTK 101 (126)
T ss_dssp -------HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHH-----------hCHHHHHHHHHHHHHh
Confidence 34556677766554 3456788888888764
No 95
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=58.13 E-value=46 Score=32.50 Aligned_cols=95 Identities=11% Similarity=-0.103 Sum_probs=71.0
Q ss_pred HHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCCCC
Q 000110 969 YYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFDAS 1048 (2163)
Q Consensus 969 yydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~~~ 1048 (2163)
+|.++..++..|+..+|+...++++++ -|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----------------------------------------------~P~~-- 50 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK-----------------------------------------------EPER-- 50 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------------------STTC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------------------------------------CCCC--
Confidence 588999999999999999999888764 0000
Q ss_pred CCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHH
Q 000110 1049 SWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEK 1128 (2163)
Q Consensus 1049 ~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~ 1128 (2163)
.+.....|.++...|+-.+|+..++-.-.+. -+-|. + --.||.+|.+.+.++.|..
T Consensus 51 ------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~---~-~~~la~~~~~~g~~~~A~~ 106 (121)
T 1hxi_A 51 ------------------EEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIA---V-HAALAVSHTNEHNANAALA 106 (121)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH---H-HHHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH---H-HHHHHHHHHHcCCHHHHHH
Confidence 2344567899999999999999998554443 22222 2 2479999999999999999
Q ss_pred HHHHHHHH
Q 000110 1129 ELKNAKQI 1136 (2163)
Q Consensus 1129 EL~~Ak~~ 1136 (2163)
-++.|-++
T Consensus 107 ~~~~al~~ 114 (121)
T 1hxi_A 107 SLRAWLLS 114 (121)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 88876543
No 96
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.14 E-value=44 Score=31.81 Aligned_cols=102 Identities=16% Similarity=-0.087 Sum_probs=77.1
Q ss_pred ehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeecc
Q 000110 965 VGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWS 1044 (2163)
Q Consensus 965 a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~ 1044 (2163)
-...++.++..++..|+..+|+.+-.++.++- . . .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---------------~--~------~---------------------- 61 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---------------A--T------P---------------------- 61 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---------------C--C------H----------------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---------------c--c------c----------------------
Confidence 35778999999999999999999888876520 0 0 0
Q ss_pred CCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchH
Q 000110 1045 FDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWD 1124 (2163)
Q Consensus 1045 ~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd 1124 (2163)
....+.....|.++-..|+=.+|...+...-.+.-. . ...--.+|.+|.+.+.++
T Consensus 62 -------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-~~~~~~~a~~~~~~~~~~ 116 (148)
T 2dba_A 62 -------------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-----D-VKALYRRSQALEKLGRLD 116 (148)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-----C-HHHHHHHHHHHHHHTCHH
T ss_pred -------------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-----C-HHHHHHHHHHHHHcCCHH
Confidence 123456678899999999999999998876655321 1 122236899999999999
Q ss_pred HHHHHHHHHHHH
Q 000110 1125 QAEKELKNAKQI 1136 (2163)
Q Consensus 1125 ~Ae~EL~~Ak~~ 1136 (2163)
.|..-++.|-++
T Consensus 117 ~A~~~~~~al~~ 128 (148)
T 2dba_A 117 QAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999888765
No 97
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=55.92 E-value=73 Score=31.35 Aligned_cols=102 Identities=16% Similarity=0.089 Sum_probs=75.8
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
-.+|.++..++..|++.+|+.+.+++.++. +.+.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------------p~~~-------------- 52 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------------------------HYDA-------------- 52 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCH--------------
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------------------------CccH--------------
Confidence 357889999999999999999988776430 0000
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHH
Q 000110 1047 ASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQA 1126 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~A 1126 (2163)
+-....|.++...|+-.+|...+...-.+.- +-|.. -.-||.+|.+.+.++.|
T Consensus 53 ---------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~----~~~lg~~~~~~g~~~~A 105 (142)
T 2xcb_A 53 ---------------------RYFLGLGACRQSLGLYEQALQSYSYGALMDI--NEPRF----PFHAAECHLQLGDLDGA 105 (142)
T ss_dssp ---------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHH----HHHHHHHHHHTTCHHHH
T ss_pred ---------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHH----HHHHHHHHHHcCCHHHH
Confidence 1124578899999999999999987665542 22322 24699999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 000110 1127 EKELKNAKQILVEKS 1141 (2163)
Q Consensus 1127 e~EL~~Ak~~l~~~~ 1141 (2163)
.+.++.|.++--++.
T Consensus 106 ~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 106 ESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCCCCc
Confidence 999999988765443
No 98
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=55.61 E-value=96 Score=34.62 Aligned_cols=102 Identities=16% Similarity=0.017 Sum_probs=79.0
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
+..++.++..+...|+..+|+.+..+|.++ -|.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------------------------------------------~p~ 36 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR-----------------------------------------------NPL 36 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------------------CSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------------------------------CCc
Confidence 456899999999999999999999999875 000
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
+ .+.....|.++...|+=+||+..++..-.+. |-...+ --.||.+|.+.+.|+.
T Consensus 37 ~--------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~-~~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 37 V--------------------AVYYTNRALCYLKMQQPEQALADCRRALELD-----GQSVKA-HFFLGQCQLEMESYDE 90 (281)
T ss_dssp C--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-----TTCHHH-HHHHHHHHHHTTCHHH
T ss_pred c--------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCHHH-HHHHHHHHHHcCCHHH
Confidence 0 1233567999999999999999998766553 222222 2478999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 000110 1126 AEKELKNAKQILVEK 1140 (2163)
Q Consensus 1126 Ae~EL~~Ak~~l~~~ 1140 (2163)
|..-++.|-++--++
T Consensus 91 A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 91 AIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCccc
Confidence 999999998876654
No 99
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=54.94 E-value=43 Score=30.72 Aligned_cols=99 Identities=18% Similarity=0.049 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccc
Q 000110 1066 YLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLS 1145 (2163)
Q Consensus 1066 YlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~ 1145 (2163)
..+.....|.++-..|+=.+|..++.....+.- + . ...-..+|.+|.+.+.|+.|..-++.|-++-.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~---~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 78 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP--A---N-AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------ 78 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T---C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--C---C-HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc------
Confidence 345667889999999999999999887665432 1 1 222357899999999999999888877664211
Q ss_pred ccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1146 CLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1146 C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
...+...+|.+.... ++...|...|+.++..
T Consensus 79 --------~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 79 --------YSKAYGRMGLALSSL-----------NKHVEAVAYYKKALEL 109 (131)
T ss_dssp --------CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhc
Confidence 133456677766554 3466799999988765
No 100
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=53.42 E-value=1.9e+02 Score=33.42 Aligned_cols=139 Identities=10% Similarity=-0.039 Sum_probs=84.1
Q ss_pred CcccccHHhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeecccccc
Q 000110 935 VQPCITIHDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKE 1014 (2163)
Q Consensus 935 f~~~~~~~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~ 1014 (2163)
++.+..++++++.....+..-|.+.. +.+|..|+-.....|+..+|+++=++|+.+..+....
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~~~~~~~-----a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~------------ 87 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEFQNREFK-----ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD------------ 87 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTSCC---C-----CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc------------
Confidence 34555578888877776665554433 4577788888888999999999999998875542110
Q ss_pred ccccccccccccCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcc
Q 000110 1015 YNDAGDISQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGK 1094 (2163)
Q Consensus 1015 ~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk 1094 (2163)
.. .+. ++.+.-..|.+|...|+-.||+.++.--.
T Consensus 88 ------~~-----~~~-----------------------------------~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 88 ------QA-----EIR-----------------------------------SLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp ------GC-----TTT-----------------------------------THHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------cc-----chH-----------------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 00 000 01122356889999999999998876544
Q ss_pred cccc----ccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1095 SISC----TQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1095 ~iS~----~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
.|.. ....-...+-..-..+-++..++.+|.|..-++.|-++
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 4322 22221222222212223444566899998888877655
No 101
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=52.26 E-value=29 Score=45.13 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhc
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEK 1140 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~ 1140 (2163)
+.....|.++...|+-+||+..++-.-.+. |-+.-++ .-||.+|.+.+.|+.|+..++.|.++..+.
T Consensus 112 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-----P~~~~a~-~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 112 DAHSNLASIHKDSGNIPEAIASYRTALKLK-----PDFPDAY-CNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCHHHH-HHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHH-hhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 445678999999999999999998665543 2233333 468999999999999999999998887653
No 102
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=51.54 E-value=53 Score=29.80 Aligned_cols=97 Identities=20% Similarity=0.159 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccccc
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCL 1147 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~ 1147 (2163)
+.....|.++...|+-.+|+.++.....+. |-.. ..--.+|.+|.+.+.++.|.+-++.|-++-..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------- 76 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNNA-EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------- 76 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCcH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------
Confidence 445678889999999999999998765543 2111 223478999999999999999888776542111
Q ss_pred ccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1148 KCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1148 ~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
..+...+|++.... ++...|+..|+.+++.
T Consensus 77 -------~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 77 -------AEAWYNLGNAYYKQ-----------GDYDEAIEYYQKALEL 106 (125)
T ss_dssp -------HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHh
Confidence 22334556555443 3566799999988764
No 103
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=50.09 E-value=39 Score=35.67 Aligned_cols=98 Identities=12% Similarity=0.025 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccc
Q 000110 1067 LESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSC 1146 (2163)
Q Consensus 1067 lES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C 1146 (2163)
.+.....|.++-..|+-.+|...+.-.-.+. |-... .-..||.+|.+.+.|+.|.+-++.|-++-.+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------- 109 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-----PDMPE-VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------- 109 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-----CCcHH-HHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-------
Confidence 3456688999999999999999998766553 22222 2356999999999999999999888775222
Q ss_pred cccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1147 LKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1147 ~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
...+...+|.+.... ++...|...|+.+++.
T Consensus 110 -------~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 110 -------YNYAHLNRGIALYYG-----------GRDKLAQDDLLAFYQD 140 (275)
T ss_dssp -------CTHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred -------ccHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHh
Confidence 134556677766554 4567899999999863
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=49.76 E-value=41 Score=34.86 Aligned_cols=101 Identities=14% Similarity=0.058 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccc
Q 000110 1065 CYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINL 1144 (2163)
Q Consensus 1065 cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~ 1144 (2163)
...+...+.|..+-..|+-+||+..++.--.+ --+-|- +=..||.+|.+.+.+|.|..-++.|-++--++
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~----~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---- 103 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVD----YIMGLAAIYQIKEQFQQAADLYAVAFALGKND---- 103 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH----HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC----
Confidence 35677788999999999999999999854443 222222 23469999999999999999998887653322
Q ss_pred cccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhcc
Q 000110 1145 SCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1145 ~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKl 1196 (2163)
......+|...... ++...|+..|+.|+..-
T Consensus 104 ----------~~~~~~lg~~~~~l-----------g~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 ----------YTPVFHTGQCQLRL-----------KAPLKAKECFELVIQHS 134 (151)
T ss_dssp ----------CHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHC
T ss_pred ----------cHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhC
Confidence 34556677666555 45678999999998753
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=48.92 E-value=9.8 Score=38.48 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHH
Q 000110 1071 LQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQ 1135 (2163)
Q Consensus 1071 lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~ 1135 (2163)
+..|.++...|+=++|+.++.---.+. |-..-+. ..||.+|.+.+.||.|...++.|-+
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~-----p~~~~a~-~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQ-----ERDPKAH-RFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHH-HHHHHHHHHcCchHHHHHHHHHHHH
Confidence 344555555555555555554333222 1111111 2355555555555555555544433
No 106
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=48.62 E-value=65 Score=33.73 Aligned_cols=101 Identities=15% Similarity=0.021 Sum_probs=74.5
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
..||.++.-+...|+..+|+.+..+|.++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------------------------------------------- 72 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKN-------------------------------------------------- 72 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------------------------------
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------------------------------------------------
Confidence 355669999999999999999988887210
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcch---hhHHHhhhhHHHHhhhch
Q 000110 1047 ASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQF---IVAFSSILGKLYRKKQLW 1123 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f---~v~FsS~LG~ly~kk~~W 1123 (2163)
|- +.+.....|.++...|+-.+|+..+.-...+.- +-|.+ .+..=..+|.+|.+.+.+
T Consensus 73 ------------p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~ 133 (228)
T 4i17_A 73 ------------YN-----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNI 133 (228)
T ss_dssp ------------CS-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ------------cc-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccH
Confidence 00 123355789999999999999999987765543 33322 122345689999999999
Q ss_pred HHHHHHHHHHHHH
Q 000110 1124 DQAEKELKNAKQI 1136 (2163)
Q Consensus 1124 d~Ae~EL~~Ak~~ 1136 (2163)
+.|..-++.|-++
T Consensus 134 ~~A~~~~~~al~~ 146 (228)
T 4i17_A 134 EKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999998877654
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=48.50 E-value=43 Score=33.85 Aligned_cols=100 Identities=12% Similarity=-0.016 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccc
Q 000110 1066 YLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLS 1145 (2163)
Q Consensus 1066 YlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~ 1145 (2163)
..+...+.|.++-..|+-.||+..++.--.+. .+-| .+ --.||.+|.+.+.|+.|..-++.|-++--++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~---~~-~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----- 88 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDS---RF-FLGLGACRQAMGQYDLAIHSYSYGAVMDIXE----- 88 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH---HH-HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccH---HH-HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-----
Confidence 35667788999999999999999998543332 2222 22 2469999999999999999998886653222
Q ss_pred ccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhcc
Q 000110 1146 CLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1146 C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKl 1196 (2163)
......+|...... ++...|+..|+.|+..-
T Consensus 89 ---------~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 89 ---------PRFPFHAAECLLQX-----------GELAEAESGLFLAQELI 119 (148)
T ss_dssp ---------THHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHH
T ss_pred ---------chHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHC
Confidence 23345566555444 45667889998887643
No 108
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=46.99 E-value=85 Score=39.06 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=87.4
Q ss_pred ehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeecc
Q 000110 965 VGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWS 1044 (2163)
Q Consensus 965 a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~ 1044 (2163)
.+..|..|+..+.+.|++.+|..|..+|+.+|.+.|-.. |
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-----------H----------------------------- 389 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-----------N----------------------------- 389 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-----------C-----------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-----------C-----------------------------
Confidence 456788999999999999999999999999988764221 1
Q ss_pred CCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccc---cCCcchhhHHHhhhhHHHHhhh
Q 000110 1045 FDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCT---QSLPQFIVAFSSILGKLYRKKQ 1121 (2163)
Q Consensus 1045 ~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~---q~Lp~f~v~FsS~LG~ly~kk~ 1121 (2163)
-...-+....|.++---|+-+|||.++.--.+|-.. .+=|.. .----.|++.|.+.+
T Consensus 390 -------------------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~-~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 390 -------------------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT-KDLEAMRMQTEMELR 449 (490)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH-HHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHHH
Confidence 012345668899999999999999998755444321 122222 222278999999999
Q ss_pred chHHHHHHHHHHHHHHHhccc
Q 000110 1122 LWDQAEKELKNAKQILVEKSI 1142 (2163)
Q Consensus 1122 ~Wd~Ae~EL~~Ak~~l~~~~~ 1142 (2163)
..+.||.+.+.||+.--+|..
T Consensus 450 ~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 450 MFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999986644443
No 109
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=46.79 E-value=62 Score=31.84 Aligned_cols=99 Identities=15% Similarity=0.087 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccc
Q 000110 1066 YLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLS 1145 (2163)
Q Consensus 1066 YlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~ 1145 (2163)
..+...+.|.++-..|+=.||+.++..--.+. -+-| .+-..||.+|.+.+.++.|..-++.|-++--++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----- 85 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDA----RYFLGLGACRQSLGLYEQALQSYSYGALMDINE----- 85 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-----
Confidence 45677889999999999999999998644332 1112 223479999999999999999998887653222
Q ss_pred ccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1146 CLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1146 C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
..+...+|...... ++...|+..|+.|+..
T Consensus 86 ---------~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 86 ---------PRFPFHAAECHLQL-----------GDLDGAESGFYSARAL 115 (142)
T ss_dssp ---------THHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHh
Confidence 22345566555444 4556788888888764
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=46.45 E-value=86 Score=30.84 Aligned_cols=97 Identities=11% Similarity=-0.022 Sum_probs=71.7
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
--|+++...+...|+..+|+.+=.+|+++- |.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-----------------------------------------------p~~ 46 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-----------------------------------------------PEN 46 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------TTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------------------------------CCC
Confidence 347788888899999999999988887530 000
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHH
Q 000110 1047 ASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQA 1126 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~A 1126 (2163)
.+.....|.++...|+-.+|...+.-.-.+. .+ ..-++ --||.+|.+.+.|+.|
T Consensus 47 --------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~---~~~a~-~~lg~~~~~~~~~~~A 100 (126)
T 4gco_A 47 --------------------AILYSNRAACLTKLMEFQRALDDCDTCIRLD--SK---FIKGY-IRKAACLVAMREWSKA 100 (126)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---CHHHH-HHHHHHHHHTTCHHHH
T ss_pred --------------------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hh---hhHHH-HHHHHHHHHCCCHHHH
Confidence 1223567999999999999999887654442 22 22222 3599999999999999
Q ss_pred HHHHHHHHHH
Q 000110 1127 EKELKNAKQI 1136 (2163)
Q Consensus 1127 e~EL~~Ak~~ 1136 (2163)
...++.|-++
T Consensus 101 ~~~~~~al~l 110 (126)
T 4gco_A 101 QRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 111
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=46.27 E-value=64 Score=33.35 Aligned_cols=106 Identities=13% Similarity=-0.022 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcch------------hhHHHhhhhHHHHhhhchHHHHHHH
Q 000110 1063 LQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQF------------IVAFSSILGKLYRKKQLWDQAEKEL 1130 (2163)
Q Consensus 1063 L~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f------------~v~FsS~LG~ly~kk~~Wd~Ae~EL 1130 (2163)
-....+...+.|.++-.-|+=.+|..++.-.-.+.-. -|-+ .+..-.-+|.+|.+.+.|+.|..-+
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4446778889999999999999999998866554322 2210 1234457999999999999999988
Q ss_pred HHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1131 KNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1131 ~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
+.|-++-.+ .......+|.+.... ++...|+..|+.|+..
T Consensus 112 ~~al~~~p~--------------~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 112 SKVLKIDKN--------------NVKALYKLGVANMYF-----------GFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHSTT--------------CHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcc--------------cHHHHHHHHHHHHHc-----------ccHHHHHHHHHHHHHH
Confidence 888776221 123445566555443 3456788888888754
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=44.38 E-value=1.1e+02 Score=37.37 Aligned_cols=118 Identities=15% Similarity=0.023 Sum_probs=80.2
Q ss_pred HhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccc
Q 000110 942 HDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDI 1021 (2163)
Q Consensus 942 ~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~ 1021 (2163)
++-.+...+.+.--|.+ ...|+.|+.-+...|+..+|+.+.++|+++..
T Consensus 40 ~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------------ 88 (568)
T 2vsy_A 40 TAGEMAVQRGLALHPGH-------PEAVARLGRVRWTQQRHAEAAVLLQQASDAAP------------------------ 88 (568)
T ss_dssp HHHHHHHHHHHTTSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------------
T ss_pred HHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------------------------
Confidence 44444444455555543 56789999999999999999999999987410
Q ss_pred cccccCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccC
Q 000110 1022 SQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQS 1101 (2163)
Q Consensus 1022 s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~ 1101 (2163)
. +.+.....|.++...|+-+||+..+.....+.- +
T Consensus 89 --------~-----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~ 123 (568)
T 2vsy_A 89 --------E-----------------------------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--E 123 (568)
T ss_dssp --------T-----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred --------C-----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C
Confidence 0 012235779999999999999999987766532 2
Q ss_pred CcchhhHHHhhhhHHHHhh---hchHHHHHHHHHHHHHHHhccc
Q 000110 1102 LPQFIVAFSSILGKLYRKK---QLWDQAEKELKNAKQILVEKSI 1142 (2163)
Q Consensus 1102 Lp~f~v~FsS~LG~ly~kk---~~Wd~Ae~EL~~Ak~~l~~~~~ 1142 (2163)
-+ ..-..||.+|.+. +..+.|...++.| +..+..
T Consensus 124 ~~----~~~~~l~~~~~~~~~~g~~~~A~~~~~~a---l~~~p~ 160 (568)
T 2vsy_A 124 EP----YITAQLLNWRRRLCDWRALDVLSAQVRAA---VAQGVG 160 (568)
T ss_dssp CH----HHHHHHHHHHHHTTCCTTHHHHHHHHHHH---HHHTCC
T ss_pred CH----HHHHHHHHHHHHhhccccHHHHHHHHHHH---HhcCCc
Confidence 22 2235699999999 5666666555554 444443
No 113
>1cvr_A Gingipain R, RGPB; caspases, cysteine proteinase, hydrolase-hydrolase inhibitor; HET: H37; 2.00A {Porphyromonas gingivalis} SCOP: b.1.18.12 c.17.1.2
Probab=43.69 E-value=45 Score=41.31 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=50.0
Q ss_pred HHHHHHHHhc-CCeEEEeecccccccc----chhhhcccc---ccccEEEecCCccccccCCCCCCCchHHHHHhc----
Q 000110 1975 AEELTLALKS-HDLFIYLGHGSGSQYI----SRHDLLKLE---KCAATFLMGCSSGSLSLNGCYIPQGTPLSYLLA---- 2042 (2163)
Q Consensus 1975 eeE~~~aL~~-~DLFLYfGHGsGeQYI----~~~~I~rL~---~CAasLLmGCSSg~L~~~G~fEP~Gt~l~YLlA---- 2042 (2163)
.+.+.+++.+ .-++-|+|||+..+.- ....+..+. +.|.++=.+|..|+.... .|. ..-.++.+
T Consensus 192 ~~~I~~~ln~G~~ivnY~GHG~~~~w~~e~~~~~dv~~l~N~~~lPl~it~tC~~g~Fd~~---~ps-~gE~~vl~~~~g 267 (435)
T 1cvr_A 192 PKNIIDAFNGGISLVNYTGHGSETAWGTSHFGTTHVKQLTNSNQLPFIFDVACVNGDFLFS---MPC-FAEALMRAQKDG 267 (435)
T ss_dssp HHHHHHHHHHCCSEEEEESCBCSSBBTTTCCBTTTGGGCCCTTCCCEEEEESSSTTCTTSS---SCC-HHHHHHHCEETT
T ss_pred HHHHHHHHhCCCeEEEEecCCCcccccccccChhhHHhhcCCCCCcEEEEeECcCCCCCCC---CCC-HHHHHHhcCCCC
Confidence 3566677754 5677799999876543 234455553 558899999999986521 233 33444444
Q ss_pred ---CCceeeeeccc
Q 000110 2043 ---GSPVIVANLWD 2053 (2163)
Q Consensus 2043 ---GcP~VVGNLWD 2053 (2163)
|+-+++|+=++
T Consensus 268 ~~~GAIA~igttr~ 281 (435)
T 1cvr_A 268 KPTGTVAIIASTID 281 (435)
T ss_dssp EECSCSEEEEESSC
T ss_pred CCCceEEEEecccc
Confidence 89999998763
No 114
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.35 E-value=68 Score=30.45 Aligned_cols=101 Identities=16% Similarity=-0.001 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccc
Q 000110 1067 LESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSC 1146 (2163)
Q Consensus 1067 lES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C 1146 (2163)
.+...+.|..+-..|+=.+|..++.....+.-. -+. ....-..+|.+|.+.+.|+.|...++.|-++-.++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT--PQD-QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------ 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC--HHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc--chH-HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------
Confidence 466778899999999999999999876654321 111 23344578999999999999999998887652211
Q ss_pred cccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1147 LKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1147 ~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
..+...+|.+.... ++...|...|+.++..
T Consensus 99 --------~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 --------VKALYRRSQALEKL-----------GRLDQAVLDLQRCVSL 128 (148)
T ss_dssp --------HHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHc
Confidence 23445666665544 4566799999999864
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=43.33 E-value=57 Score=33.51 Aligned_cols=106 Identities=21% Similarity=0.191 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccc
Q 000110 1069 SVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLK 1148 (2163)
Q Consensus 1069 S~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~ 1148 (2163)
...+.|.++-..|+-.+|+..+...-.+. |-...+ -..+|.+|.+.+.++.|...++.|-++..++....
T Consensus 39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---- 108 (213)
T 1hh8_A 39 ICFNIGCMYTILKNMTEAEKAFTRSINRD-----KHLAVA-YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID---- 108 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----ccchHH-HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHH----
Confidence 45678999999999999999998765543 222222 24789999999999999999999888765544211
Q ss_pred cchh------hhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1149 CRLI------LEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1149 C~l~------l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.... -...+...+|.+.... ++...|...|+.|+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 109 YKILGLQFKLFACEVLYNIAFMYAKK-----------EEWKKAEEQLALATSM 150 (213)
T ss_dssp CGGGTBCCEEEHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHTT
T ss_pred HHHhccccCccchHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHc
Confidence 0000 0123445555554433 4566799999988864
No 116
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=43.25 E-value=1.3e+02 Score=30.09 Aligned_cols=98 Identities=11% Similarity=-0.019 Sum_probs=71.6
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
..|+.|+.-++..|+..+|+.+..++.++.. .+
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------------------------------------~~ 77 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRG-----------------------------------------------EN 77 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-----------------------------------------------SC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------------------------------CC
Confidence 5788899999999999999999999886520 00
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHH-HHHhcCh--hhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhch
Q 000110 1047 ASSWNVDGCYLSPWNVLQCYLESVLQVGII-HELVGNG--VEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLW 1123 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW~vL~cYlES~lQvg~i-hE~iGng--~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~W 1123 (2163)
.+.....|.+ +...|+- .+|+..+.....+.- +-| ..--.||.+|.+.+.+
T Consensus 78 --------------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g~~ 131 (177)
T 2e2e_A 78 --------------------AELYAALATVLYYQASQHMTAQTRAMIDKALALDS--NEI----TALMLLASDAFMQANY 131 (177)
T ss_dssp --------------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT--TCH----HHHHHHHHHHHHTTCH
T ss_pred --------------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC--CcH----HHHHHHHHHHHHcccH
Confidence 0123455666 7778988 999999887765532 112 2234699999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000110 1124 DQAEKELKNAKQIL 1137 (2163)
Q Consensus 1124 d~Ae~EL~~Ak~~l 1137 (2163)
+.|..-++.|-++-
T Consensus 132 ~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 132 AQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999988776653
No 117
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=43.10 E-value=97 Score=30.91 Aligned_cols=123 Identities=16% Similarity=-0.026 Sum_probs=83.6
Q ss_pred eeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCcccccccccee
Q 000110 962 VFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASE 1041 (2163)
Q Consensus 962 ~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~ 1041 (2163)
..-.+-.+..+...+...|+..+|+.+-.+|+++-...... + . ..+ +
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~------~--~----------------~~~---------~ 53 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR------E--K----------------PGE---------P 53 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT------S--C----------------TTS---------H
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc------C--C----------------CCH---------H
Confidence 34456678899999999999999999999999875543210 0 0 000 0
Q ss_pred eccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhh
Q 000110 1042 VWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQ 1121 (2163)
Q Consensus 1042 ~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~ 1121 (2163)
-| ..+.| ....-....|.++-..|+-.+|...+.-.-.+. |-..-++ --+|.+|.+.+
T Consensus 54 ~~-----------~~~~~-----~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-----p~~~~a~-~~~g~~~~~~g 111 (162)
T 3rkv_A 54 EW-----------VELDR-----KNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-----ETNEKAL-FRRAKARIAAW 111 (162)
T ss_dssp HH-----------HHHHH-----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTCHHHH-HHHHHHHHHTT
T ss_pred HH-----------HHHHH-----HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----CcchHHH-HHHHHHHHHHh
Confidence 00 01112 223345677999999999999999988765553 3222232 35899999999
Q ss_pred chHHHHHHHHHHHHHHHh
Q 000110 1122 LWDQAEKELKNAKQILVE 1139 (2163)
Q Consensus 1122 ~Wd~Ae~EL~~Ak~~l~~ 1139 (2163)
.||.|..-++.|-++--+
T Consensus 112 ~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 112 KLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp CHHHHHHHHHHHHHHCGG
T ss_pred cHHHHHHHHHHHHhcCCC
Confidence 999999999988777433
No 118
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.90 E-value=35 Score=39.09 Aligned_cols=106 Identities=8% Similarity=-0.022 Sum_probs=67.4
Q ss_pred HHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchh
Q 000110 1073 VGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLI 1152 (2163)
Q Consensus 1073 vg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~ 1152 (2163)
+|.++...|+-++|..++.---.+....+-.+-.....--||++|...+.++.|.+-++.+-..+...... .
T Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~--------~ 172 (434)
T 4b4t_Q 101 IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK--------P 172 (434)
T ss_dssp HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS--------T
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc--------h
Confidence 35566666666666665544333333333333344455678999999999999988888877666554321 2
Q ss_pred hhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhccC
Q 000110 1153 LEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKLN 1197 (2163)
Q Consensus 1153 l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKln 1197 (2163)
..+.+...+|.++... +++..|...|+.|+..-+
T Consensus 173 ~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKL-----------RNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHHHhh
Confidence 3455666667766555 456679999999986443
No 119
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=42.24 E-value=41 Score=31.58 Aligned_cols=66 Identities=18% Similarity=0.100 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHh
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVE 1139 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~ 1139 (2163)
+...+.|.++-..|+=++|+..|..--.+. -+.|. +. -.||.+|.+.+.||.|..-++.|-++-..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~---a~-~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD--PDYVG---TY-YHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTH---HH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHH---HH-HHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 345688999999999999999998665543 22222 22 35999999999999999999988877543
No 120
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=41.88 E-value=1.6e+02 Score=30.32 Aligned_cols=112 Identities=13% Similarity=0.014 Sum_probs=77.1
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
..++.++..++..|+..+|+.+-.+|+++-.. ..... . +
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-------------~~~~~-----~-----~------------------ 77 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-------------TEEWD-----D-----Q------------------ 77 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-------------CTTCC-----C-----H------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-------------ccccc-----h-----h------------------
Confidence 45788999999999999999999998764211 00000 0 0
Q ss_pred CCCCCCccccCCcc-hhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1047 ASSWNVDGCYLSPW-NVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW-~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
.+.+. +.+ ..+.....|.++...|+-.+|...+...-.+.-. -+ ..--.+|.+|.+.+.++.
T Consensus 78 ---------~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~lg~~~~~~~~~~~ 140 (198)
T 2fbn_A 78 ---------ILLDKKKNI--EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN--NV----KALYKLGVANMYFGFLEE 140 (198)
T ss_dssp ---------HHHHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CH----HHHHHHHHHHHHHTCHHH
T ss_pred ---------hHHHHHHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--cH----HHHHHHHHHHHHcccHHH
Confidence 00000 111 1345567899999999999999999887666321 11 122468999999999999
Q ss_pred HHHHHHHHHHH
Q 000110 1126 AEKELKNAKQI 1136 (2163)
Q Consensus 1126 Ae~EL~~Ak~~ 1136 (2163)
|..-++.|-++
T Consensus 141 A~~~~~~al~~ 151 (198)
T 2fbn_A 141 AKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888766
No 121
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=41.06 E-value=36 Score=35.95 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchh----------hHHHhhhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1067 LESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFI----------VAFSSILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1067 lES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~----------v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
.+..++-|+.+---|+-++|+..|.-.-.+.-...-..+. ..+.--||.+|.+.+.+|.|...++.|-++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4667888888888899999998887544332111000000 011123999999999999999988877654
Q ss_pred HHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHh
Q 000110 1137 LVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALD 1194 (2163)
Q Consensus 1137 l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAld 1194 (2163)
--+ .+.....+|++.... ++...|+..|+.|+.
T Consensus 84 ~p~--------------~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 84 APN--------------NVDCLEACAEMQVCR-----------GQEKDALRMYEKILQ 116 (208)
T ss_dssp CTT--------------CHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHH
T ss_pred CCC--------------CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHH
Confidence 222 134556677766554 456789999999976
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=40.54 E-value=99 Score=35.60 Aligned_cols=148 Identities=15% Similarity=0.080 Sum_probs=99.8
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
+..|+.++..+...|++.+|+.+-++|+++... . . .+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-----~-----------------~--------~~------------- 183 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEY-----E-----------------S--------SF------------- 183 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-----C-----------------C--------CC-------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc-----c-----------------c--------cC-------------
Confidence 457889999999999999999999999876311 0 0 00
Q ss_pred CCCCCCCccccCCcchhh-HHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchH
Q 000110 1046 DASSWNVDGCYLSPWNVL-QCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWD 1124 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL-~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd 1124 (2163)
. . ..+.-+ .-+.+.....|.++-..|+-.+|...+.-.-.+. |-..-++ --+|.+|.+.+.++
T Consensus 184 ~----~------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~-~~lg~~~~~~g~~~ 247 (336)
T 1p5q_A 184 S----N------EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-----SNNEKGL-SRRGEAHLAVNDFE 247 (336)
T ss_dssp C----S------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHH-HHHHHHHHHTTCHH
T ss_pred C----h------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHH-HHHHHHHHHCCCHH
Confidence 0 0 001111 1124556778999999999999999998665553 2222222 46899999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhH-HHHHHHHHhccC
Q 000110 1125 QAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNA-EKLYKSALDKLN 1197 (2163)
Q Consensus 1125 ~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A-~~~Y~sAldKln 1197 (2163)
.|..-++.|-++--++ ..+...+|.+.... ++...| ..+|+..++++.
T Consensus 248 ~A~~~~~~al~l~P~~--------------~~a~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 248 LARADFQKVLQLYPNN--------------KAAKTQLAVCQQRI-----------RRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHCSSC--------------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC--------------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhh
Confidence 9999999887763322 23445566555443 334455 568898888876
No 123
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=40.29 E-value=63 Score=34.85 Aligned_cols=98 Identities=16% Similarity=0.106 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHh----hhchHHHHHHHHHHHHHHHhccc
Q 000110 1067 LESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRK----KQLWDQAEKELKNAKQILVEKSI 1142 (2163)
Q Consensus 1067 lES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~k----k~~Wd~Ae~EL~~Ak~~l~~~~~ 1142 (2163)
-+...+.|.++...|+=.+|+.+|+-.-. ++-|. + --.||.+|.. ++.++.|..-++.|-++ +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~---a-~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~-- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENS---G-CFNLGVLYYQGQGVEKNLKKAASFYAKACDL---N-- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHH---H-HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T--
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHH---H-HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---C--
Confidence 35667889999999999999999985544 33332 2 2359999999 99999999988887654 1
Q ss_pred cccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1143 NLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1143 ~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.......+|.+...- ....++...|+.+|+.|++.
T Consensus 73 -----------~~~a~~~lg~~~~~g-------~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 73 -----------YSNGCHLLGNLYYSG-------QGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp -----------CHHHHHHHHHHHHHT-------SSSCCCHHHHHHHHHHHHHT
T ss_pred -----------CHHHHHHHHHHHhCC-------CCcccCHHHHHHHHHHHHHc
Confidence 344556777776653 22356778899999999874
No 124
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=40.24 E-value=67 Score=28.15 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
+.....|.++...|+-.+|+.++...-.+.- +-| ..-..||.+|.+.+.++.|..-++.|-++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4456789999999999999999987665432 111 22347999999999999999999888765
No 125
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=39.83 E-value=2.4e+02 Score=27.55 Aligned_cols=103 Identities=12% Similarity=-0.038 Sum_probs=73.6
Q ss_pred ehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeecc
Q 000110 965 VGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWS 1044 (2163)
Q Consensus 965 a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~ 1044 (2163)
++.-|..|...+...|++.+|+.+=.+|+.+. |
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-----------------------------------------------p 39 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-----------------------------------------------P 39 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------T
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------------------------------C
Confidence 34557788888999999999999999988640 1
Q ss_pred CCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCC--cchhhHHHhhhhHHHHhhhc
Q 000110 1045 FDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSL--PQFIVAFSSILGKLYRKKQL 1122 (2163)
Q Consensus 1045 ~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~L--p~f~v~FsS~LG~ly~kk~~ 1122 (2163)
.+ .+.....|.++-..|+=.+|...+.-.-.+.-...- +...-++ .-||.+|.+.+.
T Consensus 40 ~~--------------------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~-~~lg~~~~~~~~ 98 (127)
T 4gcn_A 40 SN--------------------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM-SRAGNAFQKQND 98 (127)
T ss_dssp TC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHTTC
T ss_pred CC--------------------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH-HHHHHHHHHcCC
Confidence 00 122346799999999999999998877666433221 2222223 348999999999
Q ss_pred hHHHHHHHHHHHH
Q 000110 1123 WDQAEKELKNAKQ 1135 (2163)
Q Consensus 1123 Wd~Ae~EL~~Ak~ 1135 (2163)
++.|..-++.|-+
T Consensus 99 ~~~A~~~~~kal~ 111 (127)
T 4gcn_A 99 LSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999888776643
No 126
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=39.73 E-value=1.4e+02 Score=36.07 Aligned_cols=134 Identities=13% Similarity=0.015 Sum_probs=90.9
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
...|+.|+.-+...|++.+|+.+..+|+++...
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------------------------------------------- 169 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN----------------------------------------------- 169 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-----------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------------------------------------------
Confidence 457889999999999999999999888743100
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHH---------HhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHE---------LVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKL 1116 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE---------~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~l 1116 (2163)
+ +...+.|.++. ..|+-+||+..++-.-.+. |-...+ =..||.+
T Consensus 170 --------------------~-~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~-~~~lg~~ 222 (474)
T 4abn_A 170 --------------------K-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-----VLDGRS-WYILGNA 222 (474)
T ss_dssp --------------------H-HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHH-HHHHHHH
T ss_pred --------------------H-HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-----CCCHHH-HHHHHHH
Confidence 0 11122333333 4488899999988765553 222222 2469999
Q ss_pred HHhh--------hchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHH
Q 000110 1117 YRKK--------QLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKL 1188 (2163)
Q Consensus 1117 y~kk--------~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~ 1188 (2163)
|.+. +.|+.|..-++.|-++-.. ..-...+...+|.+.... ++...|+..
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----------~~~~~~~~~~lg~~~~~~-----------g~~~~A~~~ 280 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRK-----------ASSNPDLHLNRATLHKYE-----------ESYGEALEG 280 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----------GGGCHHHHHHHHHHHHHT-----------TCHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCC-----------cccCHHHHHHHHHHHHHc-----------CCHHHHHHH
Confidence 9999 9999999999988876221 112345566777776655 456678888
Q ss_pred HHHHHhc
Q 000110 1189 YKSALDK 1195 (2163)
Q Consensus 1189 Y~sAldK 1195 (2163)
|+.|+..
T Consensus 281 ~~~al~l 287 (474)
T 4abn_A 281 FSQAAAL 287 (474)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888764
No 127
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=39.02 E-value=2.4e+02 Score=33.31 Aligned_cols=114 Identities=15% Similarity=-0.001 Sum_probs=81.4
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
..|+.++..+...|+..+|+.+-++|+++....-. .... . -|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~-------~~~~---------~-------------------~~--- 265 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA-------AAED---------A-------------------DG--- 265 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-------HSCH---------H-------------------HH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcc-------ccCh---------H-------------------HH---
Confidence 44889999999999999999999999987654310 0000 0 00
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHH
Q 000110 1047 ASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQA 1126 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~A 1126 (2163)
...-....+.....|.++-..|+=.+|..++...-.+.- +-+ - .=--+|.+|.+.+.++.|
T Consensus 266 -------------~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~---~-a~~~lg~~~~~~g~~~eA 326 (370)
T 1ihg_A 266 -------------AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--SNT---K-ALYRRAQGWQGLKEYDQA 326 (370)
T ss_dssp -------------GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCH---H-HHHHHHHHHHHTTCHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc--hhH---H-HHHHHHHHHHHccCHHHH
Confidence 001123345567789999999999999999887665532 211 1 224689999999999999
Q ss_pred HHHHHHHHHHH
Q 000110 1127 EKELKNAKQIL 1137 (2163)
Q Consensus 1127 e~EL~~Ak~~l 1137 (2163)
...++.|.++-
T Consensus 327 ~~~l~~Al~l~ 337 (370)
T 1ihg_A 327 LADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999988764
No 128
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=37.97 E-value=43 Score=33.81 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=23.3
Q ss_pred CCCc-hHHHHHhcCC-ceeeee----ccc--------CChhhHHHHHHHHHHH
Q 000110 2031 IPQG-TPLSYLLAGS-PVIVAN----LWD--------VTDKDIDRFGKTMLDA 2069 (2163)
Q Consensus 2031 EP~G-t~l~YLlAGc-P~VVGN----LWD--------VTDkDIDRFt~~LLe~ 2069 (2163)
|+.| +++-+|.+|+ |+|..+ .-+ +...|.+.++.++.+-
T Consensus 85 e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 137 (166)
T 3qhp_A 85 ESEAIACLEAISVGIVPVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWW 137 (166)
T ss_dssp CCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGGEECTTCHHHHHHHHHHH
T ss_pred cCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCceEEcCCCHHHHHHHHHHH
Confidence 3433 6788899998 877722 112 2334667777666543
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=37.83 E-value=1e+02 Score=31.94 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=74.2
Q ss_pred HHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCCC
Q 000110 968 LYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFDA 1047 (2163)
Q Consensus 968 LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~~ 1047 (2163)
.+|.++..+...|++.+|+.+-.++..+. |.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----------------------------------------------P~~- 69 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-----------------------------------------------FYN- 69 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------TTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------------------------------CCC-
Confidence 57899999999999999999988876641 000
Q ss_pred CCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHH
Q 000110 1048 SSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAE 1127 (2163)
Q Consensus 1048 ~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae 1127 (2163)
-+-....|.++...|+-+||...++-.-.+. -+-|. ++ --||.+|.+.+.+|.|.
T Consensus 70 -------------------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~---~~-~~lg~~~~~lg~~~eA~ 124 (151)
T 3gyz_A 70 -------------------VDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYT---PV-FHTGQCQLRLKAPLKAK 124 (151)
T ss_dssp -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCH---HH-HHHHHHHHHTTCHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcH---HH-HHHHHHHHHcCCHHHHH
Confidence 1223467999999999999999998665554 23332 22 36999999999999999
Q ss_pred HHHHHHHHHH
Q 000110 1128 KELKNAKQIL 1137 (2163)
Q Consensus 1128 ~EL~~Ak~~l 1137 (2163)
..++.|-++-
T Consensus 125 ~~~~~al~l~ 134 (151)
T 3gyz_A 125 ECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999887753
No 130
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=37.36 E-value=60 Score=37.70 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=71.5
Q ss_pred HHHHHHHhcChhhHHHHhhhcccccc----ccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccc
Q 000110 1073 VGIIHELVGNGVEAEAFLLWGKSISC----TQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLK 1148 (2163)
Q Consensus 1073 vg~ihE~iGng~EAe~~l~~Gk~iS~----~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~ 1148 (2163)
.|.|+-.-|+-.||...+.--..|.. .+.-|-..+++. -||.+|...+.++.|++-++.|.++..........
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~-nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~-- 133 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWG-NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI-- 133 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch--
Confidence 59999999999999999887655532 233454555553 58999999999999999999999988765543221
Q ss_pred cchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1149 CRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1149 C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
....++...|. ... +...++...|+..|+.||..
T Consensus 134 ----~~~~~~~~~g~---~~~------~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 134 ----ESPELDCEEGW---TRL------KCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp ----CCHHHHHHHHH---HHH------HHCTTHHHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHH---HHH------HHccccHHHHHHHHHHHHHh
Confidence 11222333332 210 01113466799999999864
No 131
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=37.24 E-value=75 Score=33.79 Aligned_cols=97 Identities=20% Similarity=0.074 Sum_probs=72.7
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFD 1046 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~ 1046 (2163)
-.++.++..++..|++.+|+.+-.+++.+ . |.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------~---------------------p~- 37 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKE--------------------------N---------------------PQ- 37 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------S---------------------SS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------C---------------------CC-
Confidence 35788999999999999999887766531 0 11
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhh------
Q 000110 1047 ASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKK------ 1120 (2163)
Q Consensus 1047 ~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk------ 1120 (2163)
+.+.....|.++...|+-+||+..++-.-.+. |-...+ -..||.+|.+.
T Consensus 38 -------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a-~~~lg~~~~~~~~~~~~ 92 (217)
T 2pl2_A 38 -------------------DPEALYWLARTQLKLGLVNPALENGKTLVART-----PRYLGG-YMVLSEAYVALYRQAED 92 (217)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHH-HHHHHHHHHHHHHTCSS
T ss_pred -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHH-HHHHHHHHHHhhhhhhh
Confidence 12345677889999999999999998665553 333322 24689999999
Q ss_pred -----hchHHHHHHHHHHHHH
Q 000110 1121 -----QLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1121 -----~~Wd~Ae~EL~~Ak~~ 1136 (2163)
+.++.|...++.|-++
T Consensus 93 ~~~~~g~~~~A~~~~~~al~~ 113 (217)
T 2pl2_A 93 RERGKGYLEQALSVLKDAERV 113 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccCHHHHHHHHHHHHHh
Confidence 9999999999888765
No 132
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=34.38 E-value=76 Score=29.75 Aligned_cols=66 Identities=14% Similarity=0.021 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhc
Q 000110 1069 SVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEK 1140 (2163)
Q Consensus 1069 S~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~ 1140 (2163)
.....|.++-..|+-++|+..+...-.+. |-... .--.||.+|.+.+.++.|..-++.|-++-.+.
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFD-----PTYSV-AWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 34577899999999999999998765543 22222 22579999999999999999999988876543
No 133
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=34.15 E-value=1.5e+02 Score=36.23 Aligned_cols=100 Identities=10% Similarity=-0.110 Sum_probs=65.0
Q ss_pred cChhhHHHHhhhcccccc--ccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhh
Q 000110 1081 GNGVEAEAFLLWGKSISC--TQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVD 1158 (2163)
Q Consensus 1081 Gng~EAe~~l~~Gk~iS~--~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~ 1158 (2163)
|.=+||+.++.--.+|-. +..-=+..+.--..||.+|..+|.||.|+.-.+.|-++++.---... -.-++..
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H------p~~a~~l 374 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH------PVRGVQV 374 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC------HHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC------hHHHHHH
Confidence 555778777653333311 11111345555677999999999999999998888888765322111 1223445
Q ss_pred hhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhccC
Q 000110 1159 QQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKLN 1197 (2163)
Q Consensus 1159 ~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKln 1197 (2163)
..||-+.+.. |+...|+.+|+.||+-+.
T Consensus 375 ~nLa~~~~~~-----------g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 375 MKVGKLQLHQ-----------GMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HHHHHHHHHT-----------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----------CCHHHHHHHHHHHHHHHH
Confidence 5677777665 456789999999987554
No 134
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=32.94 E-value=90 Score=33.19 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=20.0
Q ss_pred HHHHhHHHHHhcchHHHHHHHHHHHHH
Q 000110 968 LYYDLCERLIANGRLLEALSYAIEAHR 994 (2163)
Q Consensus 968 LyydL~erl~~~G~l~~A~syakEa~~ 994 (2163)
-+|.|...+...|+..+|+.+-+.|..
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~ 46 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAA 46 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 355566666668999999999888754
No 135
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=32.83 E-value=78 Score=37.78 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHH----hcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHh----hhchHHHHHHHHHHHHHHHh
Q 000110 1068 ESVLQVGIIHEL----VGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRK----KQLWDQAEKELKNAKQILVE 1139 (2163)
Q Consensus 1068 ES~lQvg~ihE~----iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~k----k~~Wd~Ae~EL~~Ak~~l~~ 1139 (2163)
+...+.|.++.. -|+-.+|..+++-.-. ++-|... -.||.+|.. ++.++.|..-++.|-+.
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~~~~~a~----~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--- 144 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL----KGLPQAQ----QNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--- 144 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHH----HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----CCCHHHH----HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---
Confidence 456678999988 7888899988876432 3444332 249999999 89999999999887542
Q ss_pred ccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1140 KSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1140 ~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
+ .......||.+...- ....++...|..+|+.|++.
T Consensus 145 ~-------------~~~a~~~Lg~~y~~g-------~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 145 G-------------RDSGQQSMGDAYFEG-------DGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp T-------------CHHHHHHHHHHHHHT-------SSSCCCHHHHHHHHHHHHHT
T ss_pred C-------------CHHHHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHHHC
Confidence 1 244566788877654 33456788999999999875
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=32.48 E-value=1.6e+02 Score=28.84 Aligned_cols=99 Identities=13% Similarity=0.002 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccc
Q 000110 1066 YLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLS 1145 (2163)
Q Consensus 1066 YlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~ 1145 (2163)
.-|..-.-|..+=.-|+=.+|...+...-.+. |-...+ =.-+|.+|.+.+.|+.|...++.|-++ +...
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~-- 80 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-----PENAIL-YSNRAACLTKLMEFQRALDDCDTCIRL---DSKF-- 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHH-HHHHhhHHHhhccHHHHHHHHHHHHHh---hhhh--
Confidence 44556677999999999999999988665443 222222 346899999999999999988877654 2111
Q ss_pred ccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1146 CLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1146 C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
+.....+|...... ++...|+..|+.||+.
T Consensus 81 ---------~~a~~~lg~~~~~~-----------~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 81 ---------IKGYIRKAACLVAM-----------REWSKAQRAYEDALQV 110 (126)
T ss_dssp ---------HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHH
Confidence 23456677665554 4567899999999863
No 137
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=32.17 E-value=1.1e+02 Score=29.02 Aligned_cols=66 Identities=18% Similarity=0.094 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHH
Q 000110 1066 YLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQIL 1137 (2163)
Q Consensus 1066 YlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l 1137 (2163)
..+...+.|.++-..|+=.+|+..+.-.-.+.-. -| ..-..||.+|.+.+.++.|..-++.|-++-
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQ----ALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4566788999999999999999999876655322 22 223459999999999999999998886553
No 138
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=31.87 E-value=70 Score=36.07 Aligned_cols=56 Identities=23% Similarity=0.116 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1070 VLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1070 ~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
.+..|.++..-|+-+||+..+.-+ -.. ..-..+|++|.+.+.+|.|++.++.|.++
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~~----------~~~-~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQG----------DSL-ECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTC----------CSH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhCC----------CCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 456789999999999999999872 222 23456899999999999999999998776
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=31.27 E-value=67 Score=35.90 Aligned_cols=96 Identities=18% Similarity=0.057 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccccc
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCL 1147 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~ 1147 (2163)
+...+.|.++..-|+=++|+..+.-.-.+. |-.. .+-..+|.+|.+.+.|+.|..-++.|-++--+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------- 70 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVA-VYYTNRALCYLKMQQPEQALADCRRALELDGQ-------- 70 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------
Confidence 456778999999999999999998655442 2222 33457999999999999999988777654211
Q ss_pred ccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHh
Q 000110 1148 KCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALD 1194 (2163)
Q Consensus 1148 ~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAld 1194 (2163)
.+.....+|...... ++...|+..|+.|+.
T Consensus 71 ------~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 71 ------SVKAHFFLGQCQLEM-----------ESYDEAIANLQRAYS 100 (281)
T ss_dssp ------CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHH
Confidence 123456666665544 356789999999975
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=30.85 E-value=1.3e+02 Score=30.21 Aligned_cols=96 Identities=10% Similarity=0.028 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHH-HHhhhch--HHHHHHHHHHHHHHHhcccccc
Q 000110 1069 SVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKL-YRKKQLW--DQAEKELKNAKQILVEKSINLS 1145 (2163)
Q Consensus 1069 S~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~l-y~kk~~W--d~Ae~EL~~Ak~~l~~~~~~~~ 1145 (2163)
.....|.++...|+-++|+..+.....+.-. -| ..-..+|.+ |.+.+.+ +.|..-++.|-++--++
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----- 114 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NA----ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE----- 114 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CH----HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc-----
Confidence 4567888999999999999999887665422 12 233468999 8899998 99999888776652221
Q ss_pred ccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1146 CLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1146 C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
..+...+|.+.... ++...|+..|+.|++.
T Consensus 115 ---------~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 115 ---------ITALMLLASDAFMQ-----------ANYAQAIELWQKVMDL 144 (177)
T ss_dssp ---------HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHHc-----------ccHHHHHHHHHHHHhh
Confidence 23345566555443 4566799999998865
No 141
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=30.81 E-value=48 Score=31.08 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=44.0
Q ss_pred hhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHH
Q 000110 1111 SILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYK 1190 (2163)
Q Consensus 1111 S~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~ 1190 (2163)
-.||.+|.+.+.|+.|..-++.|-++--++ ..+...+|.+.... ++...|...|+
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------------~~a~~~lg~~~~~~-----------g~~~~A~~~~~ 65 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETDPDY--------------VGTYYHLGKLYERL-----------DRTDDAIDTYA 65 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------THHHHHHHHHHHHT-----------TCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------------HHHHHHHHHHHHHc-----------CCHHHHHHHHH
Confidence 368999999999999999998887652221 23566777766655 44567888888
Q ss_pred HHHhc
Q 000110 1191 SALDK 1195 (2163)
Q Consensus 1191 sAldK 1195 (2163)
.|++-
T Consensus 66 ~al~l 70 (100)
T 3ma5_A 66 QGIEV 70 (100)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88753
No 142
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=30.74 E-value=90 Score=28.30 Aligned_cols=63 Identities=17% Similarity=-0.172 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
+...+.|.++-..|+=.+|...+.-.-.+.- -... .-..+|.+|.+.+.|+.|..-++.|-++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP-----QNPV-GYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----TCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5567889999999999999999887665532 2222 2347999999999999999888877654
No 143
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=30.37 E-value=57 Score=39.78 Aligned_cols=96 Identities=6% Similarity=-0.100 Sum_probs=73.2
Q ss_pred HHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCCC
Q 000110 968 LYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFDA 1047 (2163)
Q Consensus 968 LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~~ 1047 (2163)
.|+.++..+...|+..+|+.+..+|+++. |..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-----------------------------------------------p~~- 39 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-----------------------------------------------PSN- 39 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-----------------------------------------------TTC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----------------------------------------------Ccc-
Confidence 35566677788999999999999998760 000
Q ss_pred CCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHH
Q 000110 1048 SSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAE 1127 (2163)
Q Consensus 1048 ~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae 1127 (2163)
.+.....|.++...|+=+||+..+...-.+. |-..-+ -..||.+|.+.+.++.|+
T Consensus 40 -------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----p~~~~~-~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 40 -------------------AIYYGNRSLAYLRTECYGYALGDATRAIELD-----KKYIKG-YYRRAASNMALGKFRAAL 94 (477)
T ss_dssp -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCHHH-HHHHHHHHHHHTCHHHHH
T ss_pred -------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCHHH-HHHHHHHHHHcCCHHHHH
Confidence 3455678999999999999999998766653 222222 346899999999999999
Q ss_pred HHHHHHHHH
Q 000110 1128 KELKNAKQI 1136 (2163)
Q Consensus 1128 ~EL~~Ak~~ 1136 (2163)
+.++.|-++
T Consensus 95 ~~~~~al~~ 103 (477)
T 1wao_1 95 RDYETVVKV 103 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988776
No 144
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=29.31 E-value=1.3e+02 Score=28.13 Aligned_cols=103 Identities=12% Similarity=0.017 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccc
Q 000110 1069 SVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLK 1148 (2163)
Q Consensus 1069 S~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~ 1148 (2163)
...+.|..+-.-|+=.+|...+..--.+ .-+-|. ....--.+|.+|.+.+.|+.|..-++.+-+.--++..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~------ 74 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVY-TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK------ 74 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc------
Confidence 3567888899999999999998754332 222221 1122235899999999999999988877664322210
Q ss_pred cchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhcc
Q 000110 1149 CRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKL 1196 (2163)
Q Consensus 1149 C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKl 1196 (2163)
-......+|...... ++...|...|+.++..-
T Consensus 75 -----~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 75 -----AAGGLLKLGLSQYGE-----------GKNTEAQQTLQQVATQY 106 (129)
T ss_dssp -----HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHS
T ss_pred -----cHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHC
Confidence 123345566655443 44667999999888754
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=28.88 E-value=1.2e+02 Score=35.02 Aligned_cols=105 Identities=14% Similarity=-0.049 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHhhhccccccccC---------CcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1066 YLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQS---------LPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1066 YlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~---------Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
+.+...+.|.++-..|+=.+|...+.-.-.+.-... +....+..-.-||.+|.+.+.|+.|..-++.|-++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677889999999999999999886555432221 01111334457999999999999999988888765
Q ss_pred HHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1137 LVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1137 l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
--+ .+....++|...... +++..|+..|+.||..
T Consensus 226 ~p~--------------~~~a~~~lg~~~~~~-----------g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 226 DSN--------------NEKGLSRRGEAHLAV-----------NDFELARADFQKVLQL 259 (336)
T ss_dssp CTT--------------CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred CCC--------------cHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHH
Confidence 322 134556677665554 4567899999999864
No 146
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=28.53 E-value=88 Score=31.45 Aligned_cols=63 Identities=29% Similarity=0.333 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHH
Q 000110 1068 ESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQI 1136 (2163)
Q Consensus 1068 ES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~ 1136 (2163)
+.....|.++...|+=+||+..+.-.-.+. |-..-+ =..||.+|.+.+.+|.|..-++.|=++
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIK-----PGFIRA-YQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhc-----chhhhH-HHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 345677999999999999999998765553 222222 246999999999999999999887554
No 147
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=28.09 E-value=2e+02 Score=32.03 Aligned_cols=166 Identities=10% Similarity=-0.022 Sum_probs=94.6
Q ss_pred hHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhcee-eccccccccccccccccccCCCCccccccccceeeccC
Q 000110 967 YLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYS-VENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 967 ~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
-.++.++..++..|++.+|...-.+++++.-.--.-.+..- +--..+...++-..- .. +.+.-|.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l-------------~~-~~~~~p~ 183 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVL-------------XT-IPLQDQD 183 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHH-------------TT-SCGGGCS
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHH-------------Hh-Cchhhcc
Confidence 46789999999999999999999888765432100000000 000011111111111 11 0111110
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHH
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQ 1125 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~ 1125 (2163)
+..-.+..|+..-.-|...+|...|+-- +...-+-|- ---.||.+|...+.+|.
T Consensus 184 --------------------~~~~~~~~~~~l~~~~~~~~a~~~l~~a--l~~~P~~~~----~~~~la~~l~~~g~~~~ 237 (287)
T 3qou_A 184 --------------------TRYQGLVAQIELLXQAADTPEIQQLQQQ--VAENPEDAA----LATQLALQLHQVGRNEE 237 (287)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTSCHHHHHHHHH--HHHCTTCHH----HHHHHHHHHHHTTCHHH
T ss_pred --------------------hHHHHHHHHHHHHhhcccCccHHHHHHH--HhcCCccHH----HHHHHHHHHHHcccHHH
Confidence 1123445555555557777777776543 332222222 23478999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1126 AEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1126 Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
|...++.|-+.--+. -+..+...+|++.... ++...|...|+.+|..
T Consensus 238 A~~~l~~~l~~~p~~------------~~~~a~~~l~~~~~~~-----------g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 238 ALELLFGHLRXDLTA------------ADGQTRXTFQEILAAL-----------GTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHCTTG------------GGGHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccc------------ccchHHHHHHHHHHHc-----------CCCCcHHHHHHHHHHH
Confidence 999987765542221 3566778888887766 3445788999988764
No 148
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=27.42 E-value=1.4e+02 Score=27.85 Aligned_cols=103 Identities=15% Similarity=0.002 Sum_probs=73.2
Q ss_pred HHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccCCC
Q 000110 968 LYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFDA 1047 (2163)
Q Consensus 968 LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~~ 1047 (2163)
-+|.++..++..|+..+|+.+-+++.+. + |.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~---------------------------------------p~-- 34 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL--------Y---------------------------------------PN-- 34 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C---------------------------------------SS--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--------C---------------------------------------CC--
Confidence 3688999999999999999888776532 0 10
Q ss_pred CCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHH
Q 000110 1048 SSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAE 1127 (2163)
Q Consensus 1048 ~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae 1127 (2163)
+|+. -+.....|.++...|+-++|...+...-.+.- +-|. ....--.||.+|.+.+.++.|.
T Consensus 35 ----------~~~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p--~~~~-~~~~~~~la~~~~~~g~~~~A~ 96 (129)
T 2xev_A 35 ----------GVYT-----PNALYWLGESYYATRNFQLAEAQFRDLVSRYP--THDK-AAGGLLKLGLSQYGEGKNTEAQ 96 (129)
T ss_dssp ----------STTH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TSTT-HHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------Cccc-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC--CCcc-cHHHHHHHHHHHHHcCCHHHHH
Confidence 1111 14556789999999999999999987654432 2221 1122236899999999999999
Q ss_pred HHHHHHHHHH
Q 000110 1128 KELKNAKQIL 1137 (2163)
Q Consensus 1128 ~EL~~Ak~~l 1137 (2163)
.-++.+-+..
T Consensus 97 ~~~~~~~~~~ 106 (129)
T 2xev_A 97 QTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHC
Confidence 9998776653
No 149
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=25.05 E-value=80 Score=27.65 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=43.2
Q ss_pred hhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHH
Q 000110 1111 SILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYK 1190 (2163)
Q Consensus 1111 S~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~ 1190 (2163)
..+|.+|.+.+.|+.|..-++.|-++-.++ ..+...+|.+.... ++...|+..|+
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~~~~l~~~~~~~-----------~~~~~A~~~~~ 67 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNN--------------AEAWYNLGNAYYKQ-----------GDYDEAIEYYQ 67 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHT-----------TCHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCC--------------HHHHHHHHHHHHHH-----------hhHHHHHHHHH
Confidence 358999999999999999998887652211 23445666655443 45678999999
Q ss_pred HHHhc
Q 000110 1191 SALDK 1195 (2163)
Q Consensus 1191 sAldK 1195 (2163)
.|+..
T Consensus 68 ~a~~~ 72 (91)
T 1na3_A 68 KALEL 72 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99864
No 150
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=25.05 E-value=1e+02 Score=29.52 Aligned_cols=65 Identities=26% Similarity=0.165 Sum_probs=46.1
Q ss_pred hhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHH
Q 000110 1112 ILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKS 1191 (2163)
Q Consensus 1112 ~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~s 1191 (2163)
.||+.+-+++.|+.|..-++.|-+.+.+.... -.-.+.+..+||--.... +++..|..+|+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~-------~~~~~~i~~~L~~~~~~~-----------g~~~~A~~~~~~ 71 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEIS-------TIDKVSVLDYLSYAVYQQ-----------GDLDKALLLTKK 71 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-------SSCHHHHHHHHHHHHHHT-----------TCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCC-------cccHHHHHHHHHHHHHHc-----------cCHHHHHHHHHH
Confidence 68999999999999999999999988665421 122334455555433333 446678888888
Q ss_pred HHh
Q 000110 1192 ALD 1194 (2163)
Q Consensus 1192 Ald 1194 (2163)
|+.
T Consensus 72 al~ 74 (104)
T 2v5f_A 72 LLE 74 (104)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=25.01 E-value=1.6e+02 Score=28.55 Aligned_cols=94 Identities=16% Similarity=0.030 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhcccccccccc
Q 000110 1070 VLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKC 1149 (2163)
Q Consensus 1070 ~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C 1149 (2163)
.++.|..+-..|+-.+|...++..-.+. |-..-+. -.||.+|.+.+.++.|..-++.|-++--++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~-~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--------- 84 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-----PEREEAW-RSLGLTQAENEKDGLAIIALNHARMLDPKD--------- 84 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------
Confidence 4677888888999999999987654432 2222232 369999999999999999998776653221
Q ss_pred chhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHh
Q 000110 1150 RLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALD 1194 (2163)
Q Consensus 1150 ~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAld 1194 (2163)
......+|.+.... ++...|+..|+.++.
T Consensus 85 -----~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 85 -----IAVHAALAVSHTNE-----------HNANAALASLRAWLL 113 (121)
T ss_dssp -----HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHH
Confidence 22334555544433 456679999998875
No 152
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=24.38 E-value=77 Score=28.77 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=41.9
Q ss_pred hhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHH
Q 000110 1112 ILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKS 1191 (2163)
Q Consensus 1112 ~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~s 1191 (2163)
.+|.+|.+.+.|+.|..-++.|-++--++ ..+...+|...... ++...|+..|+.
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~lg~~~~~~-----------g~~~~A~~~~~~ 63 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQPQN--------------PVGYSNKAMALIKL-----------GEYTQAIQMCQQ 63 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHT-----------TCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------------HHHHHHHHHHHHHh-----------cCHHHHHHHHHH
Confidence 48999999999999999998887653222 23455566655444 345678888888
Q ss_pred HHhc
Q 000110 1192 ALDK 1195 (2163)
Q Consensus 1192 AldK 1195 (2163)
|+..
T Consensus 64 al~~ 67 (111)
T 2l6j_A 64 GLRY 67 (111)
T ss_dssp HHTS
T ss_pred HHHh
Confidence 8753
No 153
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=21.78 E-value=1.3e+02 Score=36.63 Aligned_cols=75 Identities=21% Similarity=0.005 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHhcChhhHHHHhhhccccccc---cCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhc
Q 000110 1065 CYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCT---QSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEK 1140 (2163)
Q Consensus 1065 cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~---q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~ 1140 (2163)
..+.+.-..|.++---|+=+||+.+..--..|-.. .+=|...... .-||.+|..++.|+.|++-++.|-+|++.-
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l-~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV-MKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 36778888899999999999999998744333221 2223332222 359999999999999999999999998764
No 154
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=21.51 E-value=1.8e+02 Score=26.26 Aligned_cols=63 Identities=19% Similarity=0.043 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHH
Q 000110 1070 VLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQIL 1137 (2163)
Q Consensus 1070 ~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l 1137 (2163)
.++-|.++-..|+=.+|...+...-.+. |-...-.--.+|.+|.+.+.|+.|..-++.|-++-
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTE-----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHC-----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4677888889999999999988654432 22222023468999999999999999998887653
No 155
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=21.41 E-value=1.8e+02 Score=30.86 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhh----chHHHHHHHHHHHHHHHhcc
Q 000110 1066 YLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQ----LWDQAEKELKNAKQILVEKS 1141 (2163)
Q Consensus 1066 YlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~----~Wd~Ae~EL~~Ak~~l~~~~ 1141 (2163)
..++....|.++.--|+-.+|..+++-. .-++-|... -.||.+|.. + ..+.|..=++.|-+ .+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a----~~~g~~~a~----~~lg~~y~~-~g~~~~~~~A~~~~~~A~~---~g- 83 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKA----AAQGDGDAL----ALLAQLKIR-NPQQADYPQARQLAEKAVE---AG- 83 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH----HHTTCHHHH----HHHHHHTTS-STTSCCHHHHHHHHHHHHH---TT-
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHH----HHcCCHHHH----HHHHHHHHc-CCCCCCHHHHHHHHHHHHH---CC-
Confidence 3467788999999999999999998854 234544333 358999998 6 78888888887722 21
Q ss_pred ccccccccchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhc
Q 000110 1142 INLSCLKCRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDK 1195 (2163)
Q Consensus 1142 ~~~~C~~C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldK 1195 (2163)
.......||.+...- ....++...|..+|+.|++.
T Consensus 84 ------------~~~a~~~Lg~~y~~g-------~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 84 ------------SKSGEIVLARVLVNR-------QAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp ------------CHHHHHHHHHHHTCG-------GGSSCCHHHHHHHHHHHTSS
T ss_pred ------------CHHHHHHHHHHHHcC-------CCCccCHHHHHHHHHHHHHc
Confidence 233456677766543 33446778899999999875
No 156
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=21.07 E-value=1.7e+02 Score=27.31 Aligned_cols=66 Identities=15% Similarity=0.044 Sum_probs=51.5
Q ss_pred hhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceeeccccccccccccccccccCCCCccccccccceeeccC
Q 000110 966 GYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSF 1045 (2163)
Q Consensus 966 ~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~ 1045 (2163)
...+|.|+..+...|+..+|+.+.+++.++. |.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------------------------------p~ 51 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-----------------------------------------------PT 51 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------------------TT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----------------------------------------------CC
Confidence 4688999999999999999999999888640 00
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHHHhhhcccccc
Q 000110 1046 DASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISC 1098 (2163)
Q Consensus 1046 ~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~~l~~Gk~iS~ 1098 (2163)
+.+.....|.++...|+-++|...+.....+.-
T Consensus 52 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 52 --------------------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp --------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 012225679999999999999999987766644
No 157
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=20.59 E-value=1.6e+02 Score=29.63 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHH-HHHHHH
Q 000110 1071 LQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKE-LKNAKQ 1135 (2163)
Q Consensus 1071 lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~E-L~~Ak~ 1135 (2163)
...|.++...|+=++|+..++..-.+.- +-|- +. --||.+|.+.+.++.|-+. ++.|-+
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~---~~-~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELNP--TQKD---LV-LKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH---HH-HHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCC--CCHH---HH-HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3455555555555555555554333321 1111 11 1355555555555543332 344444
Done!