Citrus Sinensis ID: 000112
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2161 | 2.2.26 [Sep-21-2011] | |||||||
| Q9D805 | 690 | Calpain-9 OS=Mus musculus | yes | no | 0.195 | 0.613 | 0.324 | 7e-59 | |
| Q11002 | 828 | Calpain-A OS=Drosophila m | yes | no | 0.191 | 0.5 | 0.318 | 2e-58 | |
| O35920 | 690 | Calpain-9 OS=Rattus norve | yes | no | 0.195 | 0.613 | 0.318 | 3e-58 | |
| P97571 | 713 | Calpain-1 catalytic subun | no | no | 0.196 | 0.596 | 0.322 | 6e-58 | |
| P34308 | 780 | Calpain clp-1 OS=Caenorha | yes | no | 0.197 | 0.547 | 0.344 | 8e-58 | |
| O35350 | 713 | Calpain-1 catalytic subun | no | no | 0.196 | 0.596 | 0.322 | 9e-58 | |
| Q92177 | 810 | Calpain-3 OS=Gallus gallu | no | no | 0.207 | 0.554 | 0.306 | 1e-57 | |
| Q5NVS7 | 714 | Calpain-1 catalytic subun | no | no | 0.198 | 0.600 | 0.324 | 5e-57 | |
| P07384 | 714 | Calpain-1 catalytic subun | no | no | 0.197 | 0.598 | 0.329 | 7e-57 | |
| A6NHC0 | 703 | Calpain-8 OS=Homo sapiens | no | no | 0.192 | 0.593 | 0.339 | 1e-56 |
| >sp|Q9D805|CAN9_MOUSE Calpain-9 OS=Mus musculus GN=Capn9 PE=2 SV=2 | Back alignment and function desciption |
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Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 158/487 (32%), Positives = 242/487 (49%), Gaps = 64/487 (13%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D +FP + SL+ + QV W RP EIV+ +P G +D+CQ
Sbjct: 43 FEDADFPASNVSLFY-----SERPQVPFVWKRPGEIVE------KPEFILGGATRTDICQ 91
Query: 1766 GRLGDCWFLSAVAVLTEVSQISEVIITPE-----YNEEGIYTVRFCIQGEWVPVVVDDWI 1820
G LGDCW L+A+A LT ++Q + + P+ GI+ +F EW+ VV+DD +
Sbjct: 92 GELGDCWLLAAIASLT-LNQKALTRVVPQDQGFGSGYAGIFHFQFWQHSEWLDVVIDDRL 150
Query: 1821 PCESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDM 1880
P + F S +E W ++LEKAYAKL+GSYEAL+GG +A+ D TGG E +
Sbjct: 151 PT-FKDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGVAENFQI 209
Query: 1881 RSAQAQIDLASGRLWSQLLRFKQEGFLLGAG----SPSGSDVHISSSGIVQGHAYSILQV 1936
R A + L + + G LLG + S S+ +S G+++GHAY++ +
Sbjct: 210 REAPED-------FFEILEKALKRGSLLGCSIDTLNASESEAR-TSLGLIKGHAYTVTGL 261
Query: 1937 REVDGH----KLVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHVPQS--KDGIFWMS 1990
+V+ H KL+++RNPW +VEWNGPWSDSSPEW + K + + DG FWM+
Sbjct: 262 DQVNFHGQRIKLIRVRNPWG-QVEWNGPWSDSSPEWRSVDLEEQKRLGHTALDDGEFWMA 320
Query: 1991 WQDFQIHFRSIYVCRVYPSEMRYSVHGQW----------RGYSAGGCQDYAS--WNQNPQ 2038
++DF+IHF + +C + P + S +W RG +AGGC+++ W NPQ
Sbjct: 321 FKDFKIHFDKVEICNLTPDALEDSALHRWEVTIHQGSWVRGSTAGGCRNFLDTFWT-NPQ 379
Query: 2039 FRLRASGSDASFPIHVFITLTQGVSFSRTVAGFKNYQSSHDSMMFYIGMRILK---TRGR 2095
+L + D F+ R K + ++ M IG I + G
Sbjct: 380 IKLSLTERDEGQEGCTFLAALMQKDRRR----LKRFGAN----MLTIGYAIYQCPDKDGH 431
Query: 2096 RAAHNIYLHESVGGTD-YVNSREISCEMVLDPDPKGYTIVPTTIHPGEEAPFVLSVFTKA 2154
+ H S+ + ++N RE+S L P Y ++P+T P +EA F L +F++
Sbjct: 432 LSRDFFRYHASLARSKTFINLREVSERFQL--PPGDYILIPSTFEPHQEADFCLRIFSEK 489
Query: 2155 SIILEAL 2161
+ L
Sbjct: 490 RAVTRDL 496
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Calcium-regulated non-lysosomal thiol-protease. Mus musculus (taxid: 10090) EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: - |
| >sp|Q11002|CANA_DROME Calpain-A OS=Drosophila melanogaster GN=CalpA PE=1 SV=2 | Back alignment and function description |
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| >sp|O35920|CAN9_RAT Calpain-9 OS=Rattus norvegicus GN=Capn9 PE=2 SV=2 | Back alignment and function description |
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| >sp|P97571|CAN1_RAT Calpain-1 catalytic subunit OS=Rattus norvegicus GN=Capn1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P34308|CAN_CAEEL Calpain clp-1 OS=Caenorhabditis elegans GN=clp-1 PE=3 SV=4 | Back alignment and function description |
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| >sp|O35350|CAN1_MOUSE Calpain-1 catalytic subunit OS=Mus musculus GN=Capn1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q92177|CAN3_CHICK Calpain-3 OS=Gallus gallus GN=CAPN3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5NVS7|CAN1_PONAB Calpain-1 catalytic subunit OS=Pongo abelii GN=CAPN1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P07384|CAN1_HUMAN Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1 | Back alignment and function description |
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| >sp|A6NHC0|CAN8_HUMAN Calpain-8 OS=Homo sapiens GN=CAPN8 PE=2 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2161 | ||||||
| 255564850 | 2158 | calpain, putative [Ricinus communis] gi| | 0.998 | 1.0 | 0.888 | 0.0 | |
| 225435770 | 2159 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.999 | 0.866 | 0.0 | |
| 449493556 | 2162 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.999 | 0.998 | 0.855 | 0.0 | |
| 449452785 | 2173 | PREDICTED: uncharacterized protein LOC10 | 0.999 | 0.993 | 0.844 | 0.0 | |
| 356528400 | 2151 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.998 | 0.846 | 0.0 | |
| 356511025 | 2177 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.986 | 0.840 | 0.0 | |
| 297853240 | 2151 | hypothetical protein ARALYDRAFT_892532 [ | 0.994 | 0.999 | 0.820 | 0.0 | |
| 22330261 | 2151 | calpain-type cysteine protease [Arabidop | 0.994 | 0.999 | 0.820 | 0.0 | |
| 334183339 | 2179 | calpain-type cysteine protease [Arabidop | 0.994 | 0.986 | 0.809 | 0.0 | |
| 38490651 | 2142 | phytocalpain [Nicotiana benthamiana] | 0.991 | 1.0 | 0.821 | 0.0 |
| >gi|255564850|ref|XP_002523419.1| calpain, putative [Ricinus communis] gi|223537369|gb|EEF38998.1| calpain, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3834 bits (9942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1921/2161 (88%), Positives = 2028/2161 (93%), Gaps = 3/2161 (0%)
Query: 1 MDGDDKGIVLACAISGTLFAVLGSASFSILWAVNWRPWRLYSWIFARKWPNVLQGGQLGI 60
M+GD+ IVLACAISGTLF VLG ASF ILWAVNWRPWR+YSWIFARKWP + QG QLGI
Sbjct: 1 MEGDEHEIVLACAISGTLFTVLGLASFWILWAVNWRPWRIYSWIFARKWPYIFQGPQLGI 60
Query: 61 ICRFLALSAWMVVISPVAVLIMWGSWLIVILGRDIIGLAIIMAGTALLLAFYSIMLWWRT 120
+CRFL+L AWM+VISP+ VL+MWGSWLIVIL R IIGLA+IMAGTALLLAFYSIMLWWRT
Sbjct: 61 VCRFLSLLAWMIVISPIVVLVMWGSWLIVILDRHIIGLAVIMAGTALLLAFYSIMLWWRT 120
Query: 121 QWQSSRAVAVLLLLAVALLCAYELSAVYVTAGSHASDRYSPSGFFFGVSAIALAINMLFI 180
QWQSSRAVA+LL LAVALLCAYEL AVYVTAG AS+RYSPSGFFFGVSAIALAINMLFI
Sbjct: 121 QWQSSRAVAILLFLAVALLCAYELCAVYVTAGKDASERYSPSGFFFGVSAIALAINMLFI 180
Query: 181 CRMVFNGNGLDVDEYVRRAYKFAYPDGIEMGPLACLPEPPDPNELYPRQSSKASHLGLLY 240
CRMVFNGN LDVDEYVRRAYKFAY D IEMGP+ CLPEPPDPNELYPRQSS+ASHLGLLY
Sbjct: 181 CRMVFNGNSLDVDEYVRRAYKFAYSDCIEMGPMPCLPEPPDPNELYPRQSSRASHLGLLY 240
Query: 241 AGSLVVLFVYSILYGLTAMEARWLGAVTSAAVIILDWNMGACLYGFQLLQSRVAALFVAG 300
GSL+VL VYSILYGLTA E RWLGAVTS AVIILDWNMGACLYGF+LLQSRV ALFVAG
Sbjct: 241 LGSLMVLLVYSILYGLTAKEVRWLGAVTSTAVIILDWNMGACLYGFELLQSRVVALFVAG 300
Query: 301 TSRVFLICFGVHYWYLGHCISYAVVASVLLGAAVSRHLSVTNPLAARRDALQSTVIRLRE 360
SRVFLICFGVHYWYLGHCISYAVVASVLLGAAVSRHLSVTNPLAARRDALQSTVIRLRE
Sbjct: 301 ASRVFLICFGVHYWYLGHCISYAVVASVLLGAAVSRHLSVTNPLAARRDALQSTVIRLRE 360
Query: 361 GFRRKEQNSSSSSSEGCGSSVKRSSSAEAAHLGNIIEASSRSAAQCSVDVTTWNNGVLCR 420
GFRRKEQN+SSSSSEGCGSSVKRSSS EA +LGNI+E+ S+ AQC++D W N VLCR
Sbjct: 361 GFRRKEQNTSSSSSEGCGSSVKRSSSVEAGNLGNIVESGSQCTAQCTLDANNWTNAVLCR 420
Query: 421 TASSHEGINSDKSMDSGRPSLALCSSSCRSVVQEPEAGTSFVDKNYDQNNSLVVCNSSGL 480
T S HEGINSD S+DSGRPSLAL SSSCRSVVQEPEAGTS DK++D NNSLVVC+SSGL
Sbjct: 421 TVSCHEGINSDNSIDSGRPSLALRSSSCRSVVQEPEAGTSG-DKHFDHNNSLVVCSSSGL 479
Query: 481 DSQGCDSSTSTSANQQILDLNLALAFQERLNDPRITSMLKKRAREGDRELTSLLQDKGLD 540
DSQGC+SSTS SANQQ+LDLN+ALA Q+RLNDPRITS+LKKRAR+GD+ELTSLLQDKGLD
Sbjct: 480 DSQGCESSTSVSANQQLLDLNIALALQDRLNDPRITSLLKKRARQGDKELTSLLQDKGLD 539
Query: 541 PNFAMMLKEKSLDPTILALLQRSSLDADRDHGDNTDVAVIDSNSVDNVMPNQISLSEELR 600
PNFAMMLKEK+LDPTILALLQRSSLDADRDH +NTD+ ++DSNS DN +PNQISLSEELR
Sbjct: 540 PNFAMMLKEKNLDPTILALLQRSSLDADRDHRENTDITIVDSNSFDNALPNQISLSEELR 599
Query: 601 LRGLEKWLQMSRFVLHKAAGTPERAWVLFSFIFILETISVAIFRPKTIRIINARHQQFEF 660
L GLEKWLQ+SRFVLH AGTPERAWVLFSFIFILETI+VAIFRPKTI+IINA HQQFEF
Sbjct: 600 LHGLEKWLQLSRFVLHHIAGTPERAWVLFSFIFILETIAVAIFRPKTIKIINATHQQFEF 659
Query: 661 GFAVLLLSPVVCSIMAFLRSFRAEEMAMTSKPRKYGFIAWLLSTSVGLLLSFLSKSSLLL 720
GFAVLLLSPVVCSIMAFLRS +AE+MAMTSKPRKYGFIAWLLST VGLLLSFLSKSS+LL
Sbjct: 660 GFAVLLLSPVVCSIMAFLRSLQAEDMAMTSKPRKYGFIAWLLSTCVGLLLSFLSKSSVLL 719
Query: 721 GLSLTVPLMVACLSFAIPIWIRNGYQFKVPQVQCAATPGGNDQPPGKKEGIVLVICITVF 780
GLSLTVPLMVACLS PIW RNGYQF V +VQ A GN +P G KEGIVL+IC+ VF
Sbjct: 720 GLSLTVPLMVACLSVTFPIWARNGYQFWVSRVQSTAH-AGNHRPSGTKEGIVLIICVVVF 778
Query: 781 TGSVLALGAIVSAKPLEDLGYKGWTGEPNSFASPYASSVYLGWLMASAIALVVTGVLPIV 840
TGSVLALGAIVS KPL+DL YKGW +P +SPYASSVYLGW MASAIALVVTGVLPI+
Sbjct: 779 TGSVLALGAIVSVKPLDDLEYKGWASDPRGLSSPYASSVYLGWAMASAIALVVTGVLPII 838
Query: 841 SWFSTYRFSLSSAICVGIFAAVLVAFCGASYLEVVKSREDQVPTKGDFLAALLPLVCIPA 900
SWF+TYRFSLSSA+CVGIF VLVAFCG SY+EVVKSR+DQVPTKGDFLAALLPLVCIPA
Sbjct: 839 SWFATYRFSLSSAVCVGIFTVVLVAFCGVSYVEVVKSRDDQVPTKGDFLAALLPLVCIPA 898
Query: 901 LLSLCSGLLKWKDDDWKLSRGVYVFITIGLVLLLGAISAVIVVITPWTIGVAFLLLLLLI 960
LLSLCSGLLKWKDD WKLSRGVYVF+ IGL+LLLGAISAVIVV+ PWTIGVAFLL+LLLI
Sbjct: 899 LLSLCSGLLKWKDDGWKLSRGVYVFVIIGLLLLLGAISAVIVVVNPWTIGVAFLLVLLLI 958
Query: 961 VLAIGVIHHWASNNFYLTRTQMFFVCFLAFLLGLAAFLVGWFDDKPFVGASVGYFTFLFL 1020
VLAIGVIHHWASNNFYLTRTQMFFVCFLAFLLGLAAFLVGWF KPFVGASVGYFTFLFL
Sbjct: 959 VLAIGVIHHWASNNFYLTRTQMFFVCFLAFLLGLAAFLVGWFQGKPFVGASVGYFTFLFL 1018
Query: 1021 LAGRALTVLLSPPIVVYSPRVLPVYVYDAHADCGKNVSVAFLVLYGVALAIEGWGVVASL 1080
LAGRALTVLLSPPIVVYSPRVLPVYVYDAHADCGKNVSVAFLVLYG+ALA EGWGVVASL
Sbjct: 1019 LAGRALTVLLSPPIVVYSPRVLPVYVYDAHADCGKNVSVAFLVLYGIALATEGWGVVASL 1078
Query: 1081 KIYPPFAGAAVSAITLVVAFGFAVSRPCLTLKTMEDAVHFLSKDTVVQAISRSATKTRNA 1140
KIYPPFAGAAVSAITLVVAFGFAVSRPCLTL+ MEDAVHFLSKDT+VQAI+RSATKTRNA
Sbjct: 1079 KIYPPFAGAAVSAITLVVAFGFAVSRPCLTLEAMEDAVHFLSKDTIVQAIARSATKTRNA 1138
Query: 1141 LSGTYSAPQRSASSTALLVGDPNATRDKQGNLMLPRDDVVKLRDRLKNEEFVAGSFFCRM 1200
LSGTYSAPQRSASSTALLVGDP ATRDK GNL+LPRDDVVKLRDRL+NEE V GSFF RM
Sbjct: 1139 LSGTYSAPQRSASSTALLVGDPTATRDKAGNLVLPRDDVVKLRDRLRNEELVVGSFFSRM 1198
Query: 1201 KYKRFRHELSSDYDYRREMCTHARILALEEAIDTEWVYMWDKFGGYLLLLLGLTAKAERV 1260
+Y+ F HE +SD+D RREMC HARILALEEAIDTEWVYMWD+FGGYLLLLLGLTAKAERV
Sbjct: 1199 RYRTFCHESASDFDNRREMCAHARILALEEAIDTEWVYMWDRFGGYLLLLLGLTAKAERV 1258
Query: 1261 QDEVRLRLFLDSIGFSDLSAKKIKKWMPEDRRQFEIIQESYIREKEMEEEILMQRREEEG 1320
QDEVRLRLFLDSIGFSDLSAKKIKKWMPEDRRQFEIIQESY+REKEMEEEILMQRREEEG
Sbjct: 1259 QDEVRLRLFLDSIGFSDLSAKKIKKWMPEDRRQFEIIQESYLREKEMEEEILMQRREEEG 1318
Query: 1321 RGKERRKALLEKEERKWKEIEASLISSIPNAGNREAAAMAAAVRAVGGDSVLEDSFARER 1380
RGKERRKALLEKEERKWKEIEASLISSIPNAG+REAAAMAAAVRAVG DSVL DSFARER
Sbjct: 1319 RGKERRKALLEKEERKWKEIEASLISSIPNAGSREAAAMAAAVRAVGSDSVLSDSFARER 1378
Query: 1381 VSSIARRIRTAQLARRALQTGITGAICVLDDEPTTSGRHCGQIDASICQSQKVSFSIAVM 1440
VSSIARRIRTAQLARRALQTGI GAIC+LDDEPTTSGR+CG+ID SICQ+QKVSFSIAVM
Sbjct: 1379 VSSIARRIRTAQLARRALQTGIAGAICILDDEPTTSGRNCGEIDPSICQTQKVSFSIAVM 1438
Query: 1441 IQPESGPVCLLGTEFQKKVCWEILVAGSEQGIEAGQVGLRLITKGDRQTTVAKDWSISAT 1500
IQPESGPVCLLGTEFQKKVCWEILVAG+EQGIEAGQVGLRLITKGDRQTTVAK+WSISAT
Sbjct: 1439 IQPESGPVCLLGTEFQKKVCWEILVAGAEQGIEAGQVGLRLITKGDRQTTVAKEWSISAT 1498
Query: 1501 SIADGRWHIVTMTIDADIGEATCYLDGGFDGYQTGLALSAGNSIWEEGAEVWVGVRPPTD 1560
SIADGRWHIVTMTIDAD+GEATCYLDGGFDG+QTGL LS GNSIWE G EVWVG RPPTD
Sbjct: 1499 SIADGRWHIVTMTIDADLGEATCYLDGGFDGFQTGLPLSVGNSIWELGTEVWVGFRPPTD 1558
Query: 1561 MDVFGRSDSEGAESKMHIMDVFLWGRCLTEDEIASLYSAICSAELNMNEFPEDNWQWADS 1620
+D FGRSDSEGAESKMHIMDVFLWGRCLTEDEIASL++AI S EL M +FPEDNWQWADS
Sbjct: 1559 VDAFGRSDSEGAESKMHIMDVFLWGRCLTEDEIASLHTAIGSTELGMVDFPEDNWQWADS 1618
Query: 1621 PPRVDEWDSDPADVDLYDRDDIDWDGQYSSGRKRRADRDGIVVNVDSFARKFRKPRMETQ 1680
PPRVDEWDSDPADVDLYDRDD+DWDGQYSSGRKRR+DR+ +VV+VDSFAR+FRKPR+ETQ
Sbjct: 1619 PPRVDEWDSDPADVDLYDRDDVDWDGQYSSGRKRRSDRE-VVVDVDSFARRFRKPRVETQ 1677
Query: 1681 EEIYQRMLSVELAVKEALSARGERQFTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSE 1740
EEI QRMLSVELAVKEAL ARGE FTD EFPP+DQSLY+DP NPP KLQVV+EWMRP E
Sbjct: 1678 EEINQRMLSVELAVKEALFARGETHFTDQEFPPNDQSLYLDPENPPLKLQVVSEWMRPGE 1737
Query: 1741 IVKESRLDCQPCLFSGAVNPSDVCQGRLGDCWFLSAVAVLTEVSQISEVIITPEYNEEGI 1800
IV E+R D PCLFSG+ NPSDVCQGRLGDCWFLSAVAVLTEVSQISEVIITPEYNEEGI
Sbjct: 1738 IVMENRPDSCPCLFSGSANPSDVCQGRLGDCWFLSAVAVLTEVSQISEVIITPEYNEEGI 1797
Query: 1801 YTVRFCIQGEWVPVVVDDWIPCESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEG 1860
YTVRFCIQGEWVPVVVDDWIPCESPGKPAFATS+KG+ELWVSILEKAYAKLHGSYEALEG
Sbjct: 1798 YTVRFCIQGEWVPVVVDDWIPCESPGKPAFATSRKGNELWVSILEKAYAKLHGSYEALEG 1857
Query: 1861 GLVQDALVDLTGGAGEEIDMRSAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVHI 1920
GLVQDALVDLTGGAGEEIDMRSAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVHI
Sbjct: 1858 GLVQDALVDLTGGAGEEIDMRSAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVHI 1917
Query: 1921 SSSGIVQGHAYSILQVREVDGHKLVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHVP 1980
SSSGIVQGHAYS+LQVREVDGHKLVQIRNPWANEVEWNGPWSDSS EWTDRMK+KLKHVP
Sbjct: 1918 SSSGIVQGHAYSLLQVREVDGHKLVQIRNPWANEVEWNGPWSDSSSEWTDRMKYKLKHVP 1977
Query: 1981 QSKDGIFWMSWQDFQIHFRSIYVCRVYPSEMRYSVHGQWRGYSAGGCQDYASWNQNPQFR 2040
QSKDGIFWMSWQDFQIHFRSIYVCRVYP EMRYSVHGQWRGYSAGGCQDYASWNQNPQFR
Sbjct: 1978 QSKDGIFWMSWQDFQIHFRSIYVCRVYPPEMRYSVHGQWRGYSAGGCQDYASWNQNPQFR 2037
Query: 2041 LRASGSDASFPIHVFITLTQGVSFSRTVAGFKNYQSSHDSMMFYIGMRILKTRGRRAAHN 2100
LRA+G DAS PIHVFITLTQGVSFSRT AGF+NYQSSHDSMMFYIGMRILKTRGRRA++N
Sbjct: 2038 LRATGPDASLPIHVFITLTQGVSFSRTAAGFRNYQSSHDSMMFYIGMRILKTRGRRASYN 2097
Query: 2101 IYLHESVGGTDYVNSREISCEMVLDPDPKGYTIVPTTIHPGEEAPFVLSVFTKASIILEA 2160
IYLHESVGGTDYVNSREISCEMVLDPDPKGYTIVPTTIHPGEEAPFVLSVFTKASI LEA
Sbjct: 2098 IYLHESVGGTDYVNSREISCEMVLDPDPKGYTIVPTTIHPGEEAPFVLSVFTKASITLEA 2157
Query: 2161 L 2161
L
Sbjct: 2158 L 2158
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435770|ref|XP_002285732.1| PREDICTED: uncharacterized protein LOC100244915 [Vitis vinifera] gi|297746484|emb|CBI16540.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449493556|ref|XP_004159347.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101213361 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449452785|ref|XP_004144139.1| PREDICTED: uncharacterized protein LOC101213361 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356528400|ref|XP_003532791.1| PREDICTED: uncharacterized protein LOC100809231 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356511025|ref|XP_003524232.1| PREDICTED: uncharacterized protein LOC100778679 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297853240|ref|XP_002894501.1| hypothetical protein ARALYDRAFT_892532 [Arabidopsis lyrata subsp. lyrata] gi|297340343|gb|EFH70760.1| hypothetical protein ARALYDRAFT_892532 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|22330261|ref|NP_175932.2| calpain-type cysteine protease [Arabidopsis thaliana] gi|30695926|ref|NP_850965.1| calpain-type cysteine protease [Arabidopsis thaliana] gi|30695928|ref|NP_850966.1| calpain-type cysteine protease [Arabidopsis thaliana] gi|30695930|ref|NP_850967.1| calpain-type cysteine protease [Arabidopsis thaliana] gi|20268660|gb|AAL38186.1| calpain-like protein [Arabidopsis thaliana] gi|332195111|gb|AEE33232.1| calpain-type cysteine protease [Arabidopsis thaliana] gi|332195112|gb|AEE33233.1| calpain-type cysteine protease [Arabidopsis thaliana] gi|332195113|gb|AEE33234.1| calpain-type cysteine protease [Arabidopsis thaliana] gi|332195114|gb|AEE33235.1| calpain-type cysteine protease [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|334183339|ref|NP_001185238.1| calpain-type cysteine protease [Arabidopsis thaliana] gi|332195115|gb|AEE33236.1| calpain-type cysteine protease [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|38490651|gb|AAQ55288.2| phytocalpain [Nicotiana benthamiana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2161 | ||||||
| UNIPROTKB|Q27970 | 716 | CAPN1 "Calpain-1 catalytic sub | 0.151 | 0.458 | 0.365 | 6.5e-61 | |
| ZFIN|ZDB-GENE-010724-2 | 688 | capn9 "calpain 9" [Danio rerio | 0.199 | 0.627 | 0.340 | 1.7e-58 | |
| UNIPROTKB|F6UZV8 | 719 | CAPN1 "Uncharacterized protein | 0.149 | 0.450 | 0.369 | 3.6e-58 | |
| UNIPROTKB|E1C6M3 | 690 | CAPN9 "Uncharacterized protein | 0.197 | 0.618 | 0.339 | 2e-57 | |
| UNIPROTKB|E2QT86 | 716 | CAPN1 "Uncharacterized protein | 0.150 | 0.453 | 0.366 | 1.8e-56 | |
| ZFIN|ZDB-GENE-091113-20 | 700 | si:dkeyp-101g1.3 "si:dkeyp-101 | 0.198 | 0.611 | 0.340 | 3e-56 | |
| ZFIN|ZDB-GENE-040801-227 | 700 | zgc:92480 "zgc:92480" [Danio r | 0.199 | 0.617 | 0.342 | 3.8e-56 | |
| MGI|MGI:1920897 | 690 | Capn9 "calpain 9" [Mus musculu | 0.195 | 0.611 | 0.334 | 4.9e-56 | |
| ZFIN|ZDB-GENE-040426-2814 | 704 | zgc:55262 "zgc:55262" [Danio r | 0.205 | 0.632 | 0.346 | 6.2e-56 | |
| UNIPROTKB|Q6ZSI9 | 719 | CAPN12 "Calpain-12" [Homo sapi | 0.147 | 0.443 | 0.370 | 6.5e-56 |
| UNIPROTKB|Q27970 CAPN1 "Calpain-1 catalytic subunit" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 6.5e-61, Sum P(2) = 6.5e-61
Identities = 136/372 (36%), Positives = 200/372 (53%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D FPP QSL P S +W RP+E+ + + GA +D+CQ
Sbjct: 56 FRDEAFPPVPQSLGFKELGPNSSKTYGIKWKRPTELFSNPQF-----IVDGATR-TDICQ 109
Query: 1766 GRLGDCWFLSAVAVLT-EVSQISEVIITPEYNEEGIYTVRFCIQ----GEWVPVVVDDWI 1820
G LGDCW L+A+A LT + + V+ + ++G Y F Q GEWV VVVDD +
Sbjct: 110 GALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQDG-YAGIFHFQLWQFGEWVDVVVDDLL 168
Query: 1821 PCESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDM 1880
P + GK F S +G+E W ++LEKAYAK++GSYEAL GG + D TGG E ++
Sbjct: 169 PTKD-GKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGSTSEGFEDFTGGVTEWYEL 227
Query: 1881 RSAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGS--DVH-ISSSGIVQGHAYSILQVR 1937
R A + L++ +L+ + G LLG S D+ ++ +V+GHAYS+ +
Sbjct: 228 RKAPSD-------LYNIILKALERGSLLGCSIDISSILDMEAVTFKKLVKGHAYSVTGAK 280
Query: 1938 EVD--GH--KLVQIRNPWANEVEWNGPWSDSSPEWTD---RMKHKLKHVPQSKDGIFWMS 1990
+V+ G L+++RNPW EVEW G WSD S EW M+ +L+ + +DG FWMS
Sbjct: 281 QVNYQGQMVNLIRMRNPWG-EVEWTGAWSDGSSEWNGVDPYMREQLR--VKMEDGEFWMS 337
Query: 1991 WQDFQIHFRSIYVCRVYPSEMRYS---------VHGQWR-GYSAGGCQDY-ASWNQNPQF 2039
++DF F + +C + P ++ G WR G +AGGC++Y A++ NPQF
Sbjct: 338 FRDFMREFTRLEICNLTPDALKSQRFRNWNTTLYEGTWRRGSTAGGCRNYPATFWVNPQF 397
Query: 2040 RLRASGSDASFP 2051
++R +D P
Sbjct: 398 KIRLEETDDPDP 409
|
|
| ZFIN|ZDB-GENE-010724-2 capn9 "calpain 9" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6UZV8 CAPN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C6M3 CAPN9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2QT86 CAPN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-091113-20 si:dkeyp-101g1.3 "si:dkeyp-101g1.3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-040801-227 zgc:92480 "zgc:92480" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1920897 Capn9 "calpain 9" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-040426-2814 zgc:55262 "zgc:55262" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6ZSI9 CAPN12 "Calpain-12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.22 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2161 | |||
| cd00044 | 315 | cd00044, CysPc, Calpains, domains IIa, IIb; calciu | 1e-110 | |
| smart00230 | 318 | smart00230, CysPc, Calpain-like thiol protease fam | 4e-88 | |
| pfam00648 | 302 | pfam00648, Peptidase_C2, Calpain family cysteine p | 2e-81 | |
| cd00214 | 150 | cd00214, Calpain_III, Calpain, subdomain III | 1e-34 | |
| smart00720 | 143 | smart00720, calpain_III, calpain_III domain | 6e-33 | |
| pfam01067 | 142 | pfam01067, Calpain_III, Calpain large subunit, dom | 2e-26 | |
| pfam13385 | 156 | pfam13385, Laminin_G_3, Concanavalin A-like lectin | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 8e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.003 | |
| COG0471 | 461 | COG0471, CitT, Di- and tricarboxylate transporters | 0.003 |
| >gnl|CDD|238004 cd00044, CysPc, Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like | Back alignment and domain information |
|---|
Score = 353 bits (907), Expect = e-110
Identities = 140/309 (45%), Positives = 183/309 (59%), Gaps = 11/309 (3%)
Query: 1704 RQFTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDV 1763
F D +FPP+D SL D + + V EW RPSEI + P LF +PSDV
Sbjct: 11 VLFEDPDFPPNDSSLGFDDSLSNGQPKKVIEWKRPSEIFADDGNS-NPRLFVNGASPSDV 69
Query: 1764 CQGRLGDCWFLSAVAVLTEVSQISEVIITP----EYNEEGIYTVRFCIQGEWVPVVVDDW 1819
CQG LGDCWFL+A+A L E ++ + +I P E N GIY RF GEWV VV+DD
Sbjct: 70 CQGILGDCWFLAALAALAERPELLKRVIPPDQSFEENYAGIYHFRFWKNGEWVEVVIDDR 129
Query: 1820 IPCESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEID 1879
+P + G F S+ +ELWV++LEKAYAKLHGSYEAL GG +AL DLTGG E ID
Sbjct: 130 LPTSN-GGLLFMHSRDRNELWVALLEKAYAKLHGSYEALVGGNTAEALEDLTGGPTERID 188
Query: 1880 MRSAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVHI-SSSGIVQGHAYSILQVRE 1938
++SA A L++ LL F Q G L+G + S S+ +++G+V+GHAYS+L VRE
Sbjct: 189 LKSADASSGD--NDLFALLLSFLQGGSLIGCSTGSRSEEEARTANGLVKGHAYSVLDVRE 246
Query: 1939 VD--GHKLVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHVPQSKDGIFWMSWQDFQI 1996
V G +L+++RNPW W G DSS W + K + DG FWMS++DF
Sbjct: 247 VQEEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFEDFLR 306
Query: 1997 HFRSIYVCR 2005
+F +YVC
Sbjct: 307 NFDGLYVCN 315
|
Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Length = 315 |
| >gnl|CDD|128526 smart00230, CysPc, Calpain-like thiol protease family | Back alignment and domain information |
|---|
| >gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease | Back alignment and domain information |
|---|
| >gnl|CDD|238132 cd00214, Calpain_III, Calpain, subdomain III | Back alignment and domain information |
|---|
| >gnl|CDD|214786 smart00720, calpain_III, calpain_III domain | Back alignment and domain information |
|---|
| >gnl|CDD|216279 pfam01067, Calpain_III, Calpain large subunit, domain III | Back alignment and domain information |
|---|
| >gnl|CDD|222092 pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2161 | |||
| KOG0045 | 612 | consensus Cytosolic Ca2+-dependent cysteine protea | 100.0 | |
| smart00230 | 318 | CysPc Calpain-like thiol protease family. Calpain- | 100.0 | |
| cd00044 | 315 | CysPc Calpains, domains IIa, IIb; calcium-dependen | 100.0 | |
| PF00648 | 298 | Peptidase_C2: Calpain family cysteine protease Thi | 100.0 | |
| KOG0045 | 612 | consensus Cytosolic Ca2+-dependent cysteine protea | 99.95 | |
| smart00720 | 143 | calpain_III calpain_III. | 99.83 | |
| cd00214 | 150 | Calpain_III Calpain, subdomain III. Calpains are c | 99.82 | |
| PF01067 | 147 | Calpain_III: Calpain large subunit, domain III; In | 99.79 | |
| cd00152 | 201 | PTX Pentraxins are plasma proteins characterized b | 97.91 | |
| smart00159 | 206 | PTX Pentraxin / C-reactive protein / pentaxin fami | 97.81 | |
| PF13385 | 157 | Laminin_G_3: Concanavalin A-like lectin/glucanases | 97.3 | |
| PF00354 | 195 | Pentaxin: Pentaxin family; InterPro: IPR001759 Pen | 97.29 | |
| cd00110 | 151 | LamG Laminin G domain; Laminin G-like domains are | 94.18 | |
| smart00210 | 184 | TSPN Thrombospondin N-terminal -like domains. Hepa | 94.11 | |
| smart00282 | 135 | LamG Laminin G domain. | 93.19 | |
| smart00560 | 133 | LamGL LamG-like jellyroll fold domain. | 90.83 | |
| cd02619 | 223 | Peptidase_C1 C1 Peptidase family (MEROPS database | 81.9 |
| >KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-72 Score=686.37 Aligned_cols=442 Identities=38% Similarity=0.687 Sum_probs=357.5
Q ss_pred HHHHHHHhcCCCceecCCCCCCCCCcccCCCCCCccccCcceeeccccccccCccCCCceeecCCCCCCCcccCCCCCch
Q 000112 1693 AVKEALSARGERQFTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQGRLGDCW 1772 (2161)
Q Consensus 1693 aIKE~L~arGe~~FeDpEFPPsdsSLy~Dp~~P~sklq~~IqWkRPsEI~~e~~~ds~P~LF~ggIsPsDVkQG~LGDCW 1772 (2161)
.+++.|...+ ..|+|++|||+++|++.+...|..+. ..+.|+||+|++. +|+++.+++++.||+||.+||||
T Consensus 15 ~~~~~cl~~~-~~F~D~~FP~~~~Sl~~~~~~p~~~~-~~i~W~RP~ei~~------~p~~i~~~~~~~di~Qg~lgdCw 86 (612)
T KOG0045|consen 15 RLRRDCLPAK-SLFVDALFPAADSSLFYKLSTPLAQF-SDIVWKRPQEICA------NPRLIVDGPSRFDVKQGLLGDCW 86 (612)
T ss_pred HHHHHHhhcC-CcccccCCCCCCccccccccCCCccc-ccceecCcccccC------CCCeecCCCCcceeEEeeecchH
Confidence 3455555554 58999999999999998765555332 4589999999764 68999999999999999999999
Q ss_pred HHHHHHHHhccccccccccCc----ccCCCCcEEEEEeeCCEEEEEEecccccCCCCCceEEeecCCCCchhHHHHHHHH
Q 000112 1773 FLSAVAVLTEVSQISEVIITP----EYNEEGIYTVRFCIQGEWVPVVVDDWIPCESPGKPAFATSKKGHELWVSILEKAY 1848 (2161)
Q Consensus 1773 FLAALAALAE~PrLle~fItP----eyNe~GiY~VRLyiNGeWreVVVDDrLPc~~nGkPLFArSsd~nELWpSLLEKAY 1848 (2161)
|+||+|+||.++.++.+++++ .+++.|+|+||||++|+|+.|+|||+|||. +|+..|+++..++|+|++||||||
T Consensus 87 ~laA~a~la~~~~ll~~vip~~~~~~~~yaGif~f~~w~~G~W~~VvIDD~LP~~-~~~~~~~~s~~~~efW~aLlEKAy 165 (612)
T KOG0045|consen 87 FLAACAALALRPELLDKVIPQDQSFQENYAGIFHFRFWQNGEWVEVVIDDRLPTS-NGGLLFSHSSGKNEFWAALLEKAY 165 (612)
T ss_pred HHHHHHHhhcCHHHHHhccCCCcccccccceEEEEEEEeCCeEEEEEeeeecceE-cCCEEEEeecCCceeHHHHHHHHH
Confidence 999999999999998888873 367899999999999999999999999997 567889999888999999999999
Q ss_pred HHhcCCcccccCCChHHHHhhccCCcceeecccchhhhhccchhHHHHHHHHHhcCCCEEEeeCCC--CCC---cccccc
Q 000112 1849 AKLHGSYEALEGGLVQDALVDLTGGAGEEIDMRSAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPS--GSD---VHISSS 1923 (2161)
Q Consensus 1849 AKLhGSYeaLeGG~~sEAL~DLTGgP~E~IDL~saeaq~Dl~sdeLWk~LlsalksG~LMgAsTps--gsD---~e~es~ 1923 (2161)
||++|||+++.||...+|+.+|||+.+|.++++..... +.+ +.+|. +.+..++|.+++|++.. ..+ .....+
T Consensus 166 aKl~GsY~~l~gg~~~~a~~~lTG~~~e~~~l~~~~~~-~~~-~l~~~-~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~ 242 (612)
T KOG0045|consen 166 AKLLGSYEALHGGSTIDALVDLTGGVTEPFDLNKTPKS-FKN-NLVWA-LLKSAHRGSLLLCSIESKDPTEEEEEAKLRN 242 (612)
T ss_pred HHHhCcccCCCCCchhhHHHhccCCccceeEcccCcch-hHH-HHHHH-HHHhhhccCceeeeccccccchhHHHHHhhc
Confidence 99999999999999999999999999999998764311 111 33444 44555556666665432 222 235689
Q ss_pred CcccCceeEEEEEEEEcC----eEEEEEecCCCCCccccCCCCCCCccccHHHHhhhCCC--CCCCCCeeecchhhHhhc
Q 000112 1924 GIVQGHAYSILQVREVDG----HKLVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHV--PQSKDGIFWMSWQDFQIH 1997 (2161)
Q Consensus 1924 GLVsGHAYSVLdV~EVdG----~RLVRLRNPWG~~~EWKG~WSD~S~eWTeeLKkkL~~~--p~sDDGtFWMSfEDFLky 1997 (2161)
||+++|||+|++++++++ ++|+||||||| +.||||+|||++++|....+..+... ...+||+|||+++||+++
T Consensus 243 gL~~~HaYsit~~~~~~~~~~~~~lirlrNPwg-~~~W~G~wsd~~~~W~~v~~~~~~~~~~~~~~dGeFWms~~dF~~~ 321 (612)
T KOG0045|consen 243 GLVKGHAYAITDVREVQGRGGKHRLIRLRNPWG-ESEWNGPWSDGSEEWHLVDKSKLSELGRQPLDDGEFWMSFDDFLRE 321 (612)
T ss_pred CccccccEEEEEEEEeecccccceeEEecCCcC-CceeccccccCCcchhhhCHHHHhhcccccccCCCeeeeHHHHHhh
Confidence 999999999999999999 99999999999 58999999999999998766554422 126899999999999999
Q ss_pred ccceeEEEEcCCCc---------cccccCce--e-cccCCCCccC-cCCCCCCeEEEEeccCCCCCCEEEEEEeeccccc
Q 000112 1998 FRSIYVCRVYPSEM---------RYSVHGQW--R-GYSAGGCQDY-ASWNQNPQFRLRASGSDASFPIHVFITLTQGVSF 2064 (2161)
Q Consensus 1998 FssIyICrl~Pd~~---------RyrVhGeW--r-G~TAGGC~Df-dTF~qNPQY~LsVssSD~sePi~VLISLSQkDqr 2064 (2161)
|+.+++|++.|++. ....+|+| . +.++|||.++ ++|.+||||.+.+..++. ..+.++..+.|+..+
T Consensus 322 F~~~~vC~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~t~ggc~~~~~tF~~npq~~~~~~~~~~-~~~~~v~~~~q~~~~ 400 (612)
T KOG0045|consen 322 FDSLTVCRLRPDWLESRNQLQWVKLSLDGEWELARGVTAGGCRNSVDTFDRNPQYILAVRKPTK-SLCAVVLALFQKTRR 400 (612)
T ss_pred CCeEeecCCCcchhhhhheeeeeeeecCCccceeecccCCCCccCcccccCCceEEEEecCCCc-cceEEEEEeeccccc
Confidence 99999999988754 13467999 3 5789999998 799999999999975432 357788889998643
Q ss_pred cccccccccccccCCCceeEEEEEEEEecCcccccceeeccc-cCCcccccCcceEEEEEEeCCCccEEEEccccCCCCc
Q 000112 2065 SRTVAGFKNYQSSHDSMMFYIGMRILKTRGRRAAHNIYLHES-VGGTDYVNSREISCEMVLDPDPKGYTIVPTTIHPGEE 2143 (2161)
Q Consensus 2065 sR~~~GFrnYq~shDs~LLyIGL~VfKvrGnRs~~nIflhEs-V~sgdYVNSREVS~RLtLEPepG~YVVVPSTyEPGqE 2143 (2161)
+-. ....+...||+++++...++... +..+.+ .....|.+.|+|+.++++|| |.|++||+|++|+++
T Consensus 401 ~~~---------~~~~~~~~ig~~i~~v~~~~~~~-~~~~~~~~~~~~~i~~r~v~~~~~~P~--~~y~~~pst~~~~~~ 468 (612)
T KOG0045|consen 401 GER---------SFGANILDIGFHIYEVPLEGKYF-VLDNAPIASSSSFINNREVSVRFRLPP--GTYVIVPSTFEPGEE 468 (612)
T ss_pred ccc---------cccceeeecceEEEEecCCCCce-EecccchhcccccccceeEEEEecCCC--cceeecccCCCCCCC
Confidence 111 11235688999999998663221 222222 34567999999999999775 899999999999999
Q ss_pred cCcEEEEEeCCCcceee
Q 000112 2144 APFVLSVFTKASIILEA 2160 (2161)
Q Consensus 2144 G~FTLRVFSskpItLEP 2160 (2161)
++|+|+||++.++..++
T Consensus 469 ~~f~lrvfs~~~~~~~~ 485 (612)
T KOG0045|consen 469 GEFLLRVFSNVKVKSEE 485 (612)
T ss_pred ccEEEEEeecccccCcc
Confidence 99999999998877663
|
|
| >smart00230 CysPc Calpain-like thiol protease family | Back alignment and domain information |
|---|
| >cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like | Back alignment and domain information |
|---|
| >PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification | Back alignment and domain information |
|---|
| >KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00720 calpain_III calpain_III | Back alignment and domain information |
|---|
| >cd00214 Calpain_III Calpain, subdomain III | Back alignment and domain information |
|---|
| >PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity | Back alignment and domain information |
|---|
| >smart00159 PTX Pentraxin / C-reactive protein / pentaxin family | Back alignment and domain information |
|---|
| >PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A | Back alignment and domain information |
|---|
| >PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits | Back alignment and domain information |
|---|
| >cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans | Back alignment and domain information |
|---|
| >smart00210 TSPN Thrombospondin N-terminal -like domains | Back alignment and domain information |
|---|
| >smart00282 LamG Laminin G domain | Back alignment and domain information |
|---|
| >smart00560 LamGL LamG-like jellyroll fold domain | Back alignment and domain information |
|---|
| >cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2161 | ||||
| 1qxp_A | 900 | Crystal Structure Of A Mu-Like Calpain Length = 900 | 6e-58 | ||
| 1kfx_L | 699 | Crystal Structure Of Human M-Calpain Form I Length | 1e-54 | ||
| 3df0_A | 714 | Calcium-Dependent Complex Between M-Calpain And Cal | 2e-52 | ||
| 1u5i_A | 700 | Crystal Structure Analysis Of Rat M-Calpain Mutant | 2e-52 | ||
| 1df0_A | 700 | Crystal Structure Of M-Calpain Length = 700 | 2e-52 | ||
| 1tl9_A | 339 | High Resolution Crystal Structure Of Calpain I Prot | 2e-47 | ||
| 2ary_A | 351 | Catalytic Domain Of Human Calpain-1 Length = 351 | 2e-46 | ||
| 1kxr_A | 339 | Crystal Structure Of Calcium-Bound Protease Core Of | 3e-46 | ||
| 1zcm_A | 321 | Human Calpain Protease Core Inhibited By Zllych2f L | 6e-46 | ||
| 1ziv_A | 339 | Catalytic Domain Of Human Calpain-9 Length = 339 | 1e-45 | ||
| 2p0r_A | 333 | Structure Of Human Calpain 9 In Complex With Leupep | 2e-45 | ||
| 2nqa_A | 326 | Catalytic Domain Of Human Calpain 8 Length = 326 | 1e-44 | ||
| 1mdw_A | 328 | Crystal Structure Of Calcium-bound Protease Core Of | 6e-44 |
| >pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain Length = 900 | Back alignment and structure |
|
| >pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I Length = 699 | Back alignment and structure |
| >pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And Calpastatin Length = 714 | Back alignment and structure |
| >pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10 Thr Length = 700 | Back alignment and structure |
| >pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain Length = 700 | Back alignment and structure |
| >pdb|1TL9|A Chain A, High Resolution Crystal Structure Of Calpain I Protease Core In Complex With Leupeptin Length = 339 | Back alignment and structure |
| >pdb|2ARY|A Chain A, Catalytic Domain Of Human Calpain-1 Length = 351 | Back alignment and structure |
| >pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of Calpain I Length = 339 | Back alignment and structure |
| >pdb|1ZCM|A Chain A, Human Calpain Protease Core Inhibited By Zllych2f Length = 321 | Back alignment and structure |
| >pdb|1ZIV|A Chain A, Catalytic Domain Of Human Calpain-9 Length = 339 | Back alignment and structure |
| >pdb|2P0R|A Chain A, Structure Of Human Calpain 9 In Complex With Leupeptin Length = 333 | Back alignment and structure |
| >pdb|2NQA|A Chain A, Catalytic Domain Of Human Calpain 8 Length = 326 | Back alignment and structure |
| >pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of Calpain Ii Reveals The Basis For Intrinsic Inactivation Length = 328 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Length = 714 | Back alignment and structure |
|---|
Score = 394 bits (1012), Expect = e-119
Identities = 147/524 (28%), Positives = 226/524 (43%), Gaps = 72/524 (13%)
Query: 1676 RMETQEEIYQRMLSVELAVKE---------ALSARGERQFTDHEFPPDDQSLYVDPGNPP 1726
++ E + + S E A+K F D FP SL P
Sbjct: 7 KLAKDREAAEGLGSHERAIKYLNQDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPY 66
Query: 1727 SKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQGRLGDCWFLSAVAVLTE---- 1782
S EW RP+EI + P G +D+CQG LGD W L+A+A LT
Sbjct: 67 SSKTRGIEWKRPTEICAD------PQFIIGGATRTDICQGALGDSWLLAAIASLTLNEEI 120
Query: 1783 VSQISEVIITPEYNEEGIYTVRFCIQGEWVPVVVDDWIPCESPGKPAFATSKKGHELWVS 1842
++++ + + + N GI+ +F GEWV VVVDD +P + G+ F S +G E W +
Sbjct: 121 LARVVPLDQSFQENYAGIFHFQFWQYGEWVEVVVDDRLPTKD-GELLFVHSAEGSEFWSA 179
Query: 1843 ILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMRSAQAQIDLASGRLWSQLLRFK 1902
+LEKAYAK++G YEAL GG + D TGG E ++R L+ + +
Sbjct: 180 LLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELRKPP-------PNLFKIIQKAL 232
Query: 1903 QEGFLLGAGSPSGSDVH---ISSSGIVQGHAYSILQVREVDG----HKLVQIRNPWANEV 1955
++G LLG S ++ +V+GHAYS+ EV+ KL++IRNPW +V
Sbjct: 233 EKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPW-GQV 291
Query: 1956 EWNGPWSDSSPE-WTDRMKHKLKHVPQSKDGIFWMSWQDFQIHFRSIYVCRVYPSEMRYS 2014
EW G W+D+ P T + + + +DG FWMS+ DF H+ + +C + P +
Sbjct: 292 EWTGKWNDNCPSWNTVDPEVRANLTERQEDGEFWMSFSDFLRHYSRLEICNLTPDTLTCD 351
Query: 2015 ---------VHGQW-RGYSAGGCQDY-ASWNQNPQFRLRASGSDASF-----PIHVFITL 2058
+ G W RG +AGGC++Y ++ NPQ+ ++ D + L
Sbjct: 352 SYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGL 411
Query: 2059 TQGVSFSRTVAGFKNYQSSHDSMMFYIGMRILKTRGRRAAHN---------IYLHESVGG 2109
Q + Q M IG I + +
Sbjct: 412 IQ---------KHRRRQRKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERS 462
Query: 2110 TDYVNSREISCEMVLDPDPKGYTIVPTTIHPGEEAPFVLSVFTK 2153
++N RE+ L P Y +VP+T P + F + VF++
Sbjct: 463 DTFINLREVLNRFKLPPGE--YVLVPSTFEPHKNGDFCIRVFSE 504
|
| >1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Length = 900 | Back alignment and structure |
|---|
| >2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
| >2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A Length = 339 | Back alignment and structure |
|---|
| >1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A* Length = 339 | Back alignment and structure |
|---|
| >2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Length = 355 | Back alignment and structure |
|---|
| >3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Length = 217 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A* Length = 452 | Back alignment and structure |
|---|
| >3n7l_A Neurotoxin; HCR/D-SA, ganglioside binding loop; 2.00A {Clostridium botulinum} PDB: 3azw_A 3azv_A 3n7m_A 3n7k_A 3r4s_A* 3r4u_A Length = 424 | Back alignment and structure |
|---|
| >3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A Length = 206 | Back alignment and structure |
|---|
| >3rsj_A BONT/F; clostridium botulinum type F, ganglioside binding site, GD1A; HET: NGA GAL SIA; 2.00A {Clostridium botulinum} PDB: 3fuq_A Length = 413 | Back alignment and structure |
|---|
| >3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A* Length = 204 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2161 | |||
| 3bow_A | 714 | Calpain-2 catalytic subunit; cysteine protease, in | 100.0 | |
| 1qxp_A | 900 | MU-like calpain; M-calpain, MU-calpain, catalytic | 100.0 | |
| 2r9f_A | 339 | Calpain-1 catalytic subunit; protease, peptidase, | 100.0 | |
| 2nqa_A | 326 | Calpain 8; calpain, calcium-dependent cytoplasmic | 100.0 | |
| 1ziv_A | 339 | Calpain 9; cysteine protease, papain, calcium-depe | 100.0 | |
| 2qfe_A | 148 | Calpain-7; C2-like domain, hydrolase, nuclear prot | 99.76 | |
| 3pvn_A | 206 | C-reactive protein; pentraxin family, immune syste | 97.77 | |
| 3flp_A | 217 | SAP-like pentraxin; physiological doubly-stacked h | 97.76 | |
| 3kqr_A | 204 | Serum amyloid P-component; glycoprotein, disulfide | 97.74 | |
| 4dqa_A | 355 | Uncharacterized protein; two domains structure, DU | 96.99 | |
| 1za4_A | 251 | Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel | 93.59 | |
| 2v73_A | 191 | CBM40, putative EXO-alpha-sialidase; carbohydrate- | 91.64 | |
| 1a8d_A | 452 | Tetanus neurotoxin; clostridial, ganglioside bindi | 91.21 | |
| 2erf_A | 209 | Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug | 89.45 | |
| 3sh4_A | 195 | LG3 peptide; actin disassambly, integrin alpha12 B | 83.6 | |
| 1f5f_A | 205 | SHBG, sex hormone-binding globulin; jellyroll, sig | 82.91 | |
| 3v64_A | 191 | Low-density lipoprotein receptor-related protein; | 82.48 | |
| 2sli_A | 679 | Intramolecular trans-sialidase; hydrolase, neurami | 81.2 | |
| 1d2s_A | 170 | SHBG, sex hormone-binding globulin; steroid transp | 81.18 | |
| 1pz7_A | 204 | Agrin; structural protein; 1.42A {Gallus gallus} S | 80.39 | |
| 3qcw_A | 1245 | Neurexin-1-alpha; synaptic adhesion molecule, cell | 80.32 |
| >3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-86 Score=817.57 Aligned_cols=440 Identities=33% Similarity=0.648 Sum_probs=368.1
Q ss_pred HHHHHHHhcCCCceecCCCCCCCCCcccCCCCCCccccCcceeeccccccccCccCCCceeecCCCCCCCcccCCCCCch
Q 000112 1693 AVKEALSARGERQFTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQGRLGDCW 1772 (2161)
Q Consensus 1693 aIKE~L~arGe~~FeDpEFPPsdsSLy~Dp~~P~sklq~~IqWkRPsEI~~e~~~ds~P~LF~ggIsPsDVkQG~LGDCW 1772 (2161)
+|++.|.+++ .+|+||+|||+++||+.++..|..+....++|+||+||++ +|++|.++++|.||+||.+||||
T Consensus 34 ~l~~~c~~~~-~~f~D~~Fp~~~~sl~~~~~~~~~~~~~~~~W~Rp~e~~~------~p~~~~~~~~~~di~QG~lgDCw 106 (714)
T 3bow_A 34 TLRNECLEAG-ALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICA------DPQFIIGGATRTDICQGALGDSW 106 (714)
T ss_dssp HHHHHHHHHT-CCCCCTTSCSSGGGTCSSTTSTTCGGGTTCEEECHHHHCS------SCBSCSSCSCGGGCBCCSSSCHH
T ss_pred HHHHHHHHcC-CeeeCcCCCCCccccccCCCCccccccCCceEEChHHHhc------CCeeeeCCCCccccccCCcCChH
Confidence 4666677665 6999999999999999765544433334579999999985 58899999999999999999999
Q ss_pred HHHHHHHHhccccccccccCc----ccCCCCcEEEEEeeCCEEEEEEecccccCCCCCceEEeecCCCCchhHHHHHHHH
Q 000112 1773 FLSAVAVLTEVSQISEVIITP----EYNEEGIYTVRFCIQGEWVPVVVDDWIPCESPGKPAFATSKKGHELWVSILEKAY 1848 (2161)
Q Consensus 1773 FLAALAALAE~PrLle~fItP----eyNe~GiY~VRLyiNGeWreVVVDDrLPc~~nGkPLFArSsd~nELWpSLLEKAY 1848 (2161)
|+|||++|+++|.+++.++++ ..++.|+|+||||++|+|+.|+|||+||+. +|+++|++|.+++|+|++||||||
T Consensus 107 ~laala~la~~~~ll~~v~~~~~~~~~~~~G~y~~~~~~~G~w~~VvvDD~lP~~-~g~~~f~~s~~~~e~W~~LlEKAy 185 (714)
T 3bow_A 107 LLAAIASLTLNEEILARVVPLDQSFQENYAGIFHFQFWQYGEWVEVVVDDRLPTK-DGELLFVHSAEGSEFWSALLEKAY 185 (714)
T ss_dssp HHHHHHHHTTSHHHHHHHSCTTCCSSSSCSSEEEEEEEETTEEEEEEEESCEEEE-TTEESSCBCSSTTBCHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHhhcCcCcCcccCCceEEEEEEeeCCEEEEEEEeccceee-CCceEEeecCCCCcchHHHHHHHH
Confidence 999999999999988887754 246799999999999999999999999997 599999999999999999999999
Q ss_pred HHhcCCcccccCCChHHHHhhccCCcceeecccchhhhhccchhHHHHHHHHHhcCCCEEEeeCCC---CCCccccccCc
Q 000112 1849 AKLHGSYEALEGGLVQDALVDLTGGAGEEIDMRSAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPS---GSDVHISSSGI 1925 (2161)
Q Consensus 1849 AKLhGSYeaLeGG~~sEAL~DLTGgP~E~IDL~saeaq~Dl~sdeLWk~LlsalksG~LMgAsTps---gsD~e~es~GL 1925 (2161)
||+||||++|.||++.+||++|||++++.+++++. ++++|+.|.++.++|++|+|++.. +........||
T Consensus 186 AK~~G~Y~~l~gg~~~~al~~lTG~~~~~~~l~~~-------~~~l~~~l~~~~~~g~l~~~~~~~~~~~~~~~~~~~GL 258 (714)
T 3bow_A 186 AKINGCYEALSGGATTEGFEDFTGGIAEWYELRKP-------PPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKL 258 (714)
T ss_dssp HHHTSSSGGGSSBCHHHHHHHHHCCEEEEEETTSC-------CTTHHHHHHHHHHTTCEEEEECCSTTSCTTCCBCTTSC
T ss_pred HHHhCCcccccCCCHHHHHHHhhCCCeEEEEcCCC-------cHHHHHHHHHHHhCCCeEEEEcccCCcccccchhcCCC
Confidence 99999999999999999999999999999988642 457999999999999999998742 21233567899
Q ss_pred ccCceeEEEEEEEEc----CeEEEEEecCCCCCccccCCCCCCCcccc---HHHHhhhCCCCCCCCCeeecchhhHhhcc
Q 000112 1926 VQGHAYSILQVREVD----GHKLVQIRNPWANEVEWNGPWSDSSPEWT---DRMKHKLKHVPQSKDGIFWMSWQDFQIHF 1998 (2161)
Q Consensus 1926 VsGHAYSVLdV~EVd----G~RLVRLRNPWG~~~EWKG~WSD~S~eWT---eeLKkkL~~~p~sDDGtFWMSfEDFLkyF 1998 (2161)
+++|||+|+++++++ +++|||||||||. .||+|+|||+|++|+ ++.+++|.+. .+||+|||+|+||++||
T Consensus 259 ~~~HaYsvl~~~~v~~~~~~~~lv~lrNPWg~-~ew~G~wsd~s~~W~~~~~~~~~~l~~~--~~dg~FWm~~~df~~~F 335 (714)
T 3bow_A 259 VKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQ-VEWTGKWNDNCPSWNTVDPEVRANLTER--QEDGEFWMSFSDFLRHY 335 (714)
T ss_dssp BTTSCEEEEEEEEEEETTEEEEEEEEECTTSC-CCCCSTTSTTCGGGGGSCHHHHHHHCCC--CCSSEEEEEHHHHHHHC
T ss_pred cCCceEEEeeeEEeecCCCceEEEEEECCCCC-cccCCCCCCCCccccccCHHHHHHhCCC--CCCCeEEEEhHHHHhhC
Confidence 999999999999974 4799999999995 799999999999999 4577778753 48999999999999999
Q ss_pred cceeEEEEcCCCcc---------ccccCce-ecccCCCCccC-cCCCCCCeEEEEeccCCC-----CCCEEEEEEeeccc
Q 000112 1999 RSIYVCRVYPSEMR---------YSVHGQW-RGYSAGGCQDY-ASWNQNPQFRLRASGSDA-----SFPIHVFITLTQGV 2062 (2161)
Q Consensus 1999 ssIyICrl~Pd~~R---------yrVhGeW-rG~TAGGC~Df-dTF~qNPQY~LsVssSD~-----sePi~VLISLSQkD 2062 (2161)
+.++||++.|+... ..++|+| ++.++|||.++ .||++||||.|++..+++ ..+++|+|+|+|++
T Consensus 336 ~~~~ic~~~~~~~~~~~~~~w~~~~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~v~v~L~Q~~ 415 (714)
T 3bow_A 336 SRLEICNLTPDTLTCDSYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKH 415 (714)
T ss_dssp CEEEEEESSSSCTTCSSCCEEEEEEEEEEECTTTTCCCCTTCHHHHTTSCCEEEEECGGGCBCGGGCCBEEEEEEEEEES
T ss_pred CeEEEEEecccccccccCcceEEEEEeceeccCCCCCCCCCccccccCCceEEEEEccCCccccccCCccEEEEEeeeec
Confidence 99999999886531 2468999 57899999998 799999999999976542 34689999999997
Q ss_pred cccccccccccccccCCCceeEEEEEEEEecCc-------ccccceee-cccc-CCcccccCcceEEEEEEeCCCccEEE
Q 000112 2063 SFSRTVAGFKNYQSSHDSMMFYIGMRILKTRGR-------RAAHNIYL-HESV-GGTDYVNSREISCEMVLDPDPKGYTI 2133 (2161)
Q Consensus 2063 qrsR~~~GFrnYq~shDs~LLyIGL~VfKvrGn-------Rs~~nIfl-hEsV-~sgdYVNSREVS~RLtLEPepG~YVV 2133 (2161)
++..+. .+..+.+|||+|++++.. +....++. +.++ .+..|.+.|||+++++|+| |.|+|
T Consensus 416 ~r~~~~---------~g~~~~~Igf~v~~~~~~~~~~~~~~l~~~ff~~~~~~~~s~~f~~~Rev~~~~~L~p--G~Y~I 484 (714)
T 3bow_A 416 RRRQRK---------MGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPP--GEYVL 484 (714)
T ss_dssp CGGGGG---------GTCCCCCEEEEEEECCGGGSSCTTCCCCHHHHHHCCCSEECSCEESSSEEEEEEEECS--EEEEE
T ss_pred cccccc---------cCCCcceEEEEEEEecccccCccccccchhhccccCCccccCCcccccceEEEEEeCC--CCeEE
Confidence 642111 123467899999997531 11122222 2222 3467999999999999987 89999
Q ss_pred EccccCCCCccCcEEEEEeCCCcceeeC
Q 000112 2134 VPTTIHPGEEAPFVLSVFTKASIILEAL 2161 (2161)
Q Consensus 2134 VPSTyEPGqEG~FTLRVFSskpItLEPL 2161 (2161)
||+|++|+++++|+||||++++..++++
T Consensus 485 VPstf~p~~e~~F~Lrv~s~~~~~~~el 512 (714)
T 3bow_A 485 VPSTFEPHKNGDFCIRVFSEKKADYQTV 512 (714)
T ss_dssp EEEESSTTCCEEEEEEEEEEESSCC--C
T ss_pred EEecCCCCCccceeEEEeccCCcceeec
Confidence 9999999999999999999988877654
|
| >1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 | Back alignment and structure |
|---|
| >2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A | Back alignment and structure |
|---|
| >2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A* | Back alignment and structure |
|---|
| >2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens} | Back alignment and structure |
|---|
| >3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A | Back alignment and structure |
|---|
| >3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A | Back alignment and structure |
|---|
| >3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A* | Back alignment and structure |
|---|
| >4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A | Back alignment and structure |
|---|
| >2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} | Back alignment and structure |
|---|
| >1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A* | Back alignment and structure |
|---|
| >2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A | Back alignment and structure |
|---|
| >3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A | Back alignment and structure |
|---|
| >1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* | Back alignment and structure |
|---|
| >3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A | Back alignment and structure |
|---|
| >2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* | Back alignment and structure |
|---|
| >1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* | Back alignment and structure |
|---|
| >1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A | Back alignment and structure |
|---|
| >3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2161 | ||||
| d1mdwa_ | 323 | d.3.1.3 (A:) Calpain large subunit, catalytic doma | 4e-88 | |
| d2r9fa1 | 322 | d.3.1.3 (A:33-354) Calpain large subunit, catalyti | 1e-86 | |
| d1ziva1 | 310 | d.3.1.3 (A:28-337) Calpain large subunit, catalyti | 9e-82 | |
| d1qxpa3 | 159 | b.14.1.1 (A:356-514) Calpain large subunit, middle | 2e-27 | |
| d1df0a2 | 159 | b.14.1.1 (A:356-514) Calpain large subunit, middle | 1e-26 | |
| d2slia1 | 196 | b.29.1.9 (A:81-276) Leech intramolecular trans-sia | 8e-07 | |
| d1a8da1 | 247 | b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium | 9e-07 | |
| d1b09a_ | 206 | b.29.1.5 (A:) C-reactive protein (CRP) {Human (Hom | 3e-06 | |
| d1saca_ | 204 | b.29.1.5 (A:) Serum amyloid P component (SAP) {Hum | 2e-04 | |
| d1epwa1 | 218 | b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostr | 6e-04 |
| >d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Calpain large subunit, catalytic domain (domain II) domain: Calpain large subunit, catalytic domain (domain II) species: Rat (Rattus norvegicus), M-type [TaxId: 10116]
Score = 288 bits (738), Expect = 4e-88
Identities = 107/313 (34%), Positives = 160/313 (51%), Gaps = 27/313 (8%)
Query: 1706 FTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQ 1765
F D FP SL P S EW RP+EI + P G +D+CQ
Sbjct: 25 FQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICAD------PQFIIGGATRTDICQ 78
Query: 1766 GRLGDCWFLSAVAVLTE----VSQISEVIITPEYNEEGIYTVRFCIQGEWVPVVVDDWIP 1821
G LGD W L+A+A LT ++++ + + + N GI+ +F GEWV VVVDD +P
Sbjct: 79 GALGDSWLLAAIASLTLNEEILARVVPLDQSFQENYAGIFHFQFWQYGEWVEVVVDDRLP 138
Query: 1822 CESPGKPAFATSKKGHELWVSILEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMR 1881
+ G+ F S +G E W ++LEKAYAK++G YEAL GG + D TGG E ++R
Sbjct: 139 TKD-GELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELR 197
Query: 1882 SAQAQIDLASGRLWSQLLRFKQEGFLLGA---GSPSGSDVHISSSGIVQGHAYSILQVRE 1938
L+ + + ++G LLG + + ++ +V+GHAYS+ E
Sbjct: 198 KPPPN-------LFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEE 250
Query: 1939 VDGH----KLVQIRNPWANEVEWNGPWSDSSPEWTD-RMKHKLKHVPQSKDGIFWMSWQD 1993
V+ KL++IRNPW +VEW G W+D+ P W + + + +DG FWMS+ D
Sbjct: 251 VESSGSLQKLIRIRNPWG-QVEWTGKWNDNCPSWNTVDPEVRANLTERQEDGEFWMSFSD 309
Query: 1994 FQIHFRSIYVCRV 2006
F H+ + +C +
Sbjct: 310 FLRHYSRLEICNL 322
|
| >d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 322 | Back information, alignment and structure |
|---|
| >d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain (domain II) {Human (Homo sapiens), calpain 9 [TaxId: 9606]} Length = 310 | Back information, alignment and structure |
|---|
| >d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
| >d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
| >d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Length = 196 | Back information, alignment and structure |
|---|
| >d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Length = 247 | Back information, alignment and structure |
|---|
| >d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
| >d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Length = 204 | Back information, alignment and structure |
|---|
| >d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Length = 218 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2161 | |||
| d2r9fa1 | 322 | Calpain large subunit, catalytic domain (domain II | 100.0 | |
| d1mdwa_ | 323 | Calpain large subunit, catalytic domain (domain II | 100.0 | |
| d1ziva1 | 310 | Calpain large subunit, catalytic domain (domain II | 100.0 | |
| d1qxpa3 | 159 | Calpain large subunit, middle domain (domain III) | 99.82 | |
| d1df0a2 | 159 | Calpain large subunit, middle domain (domain III) | 99.82 | |
| d1b09a_ | 206 | C-reactive protein (CRP) {Human (Homo sapiens) [Ta | 97.68 | |
| d2slia1 | 196 | Leech intramolecular trans-sialidase, N-terminal d | 97.29 | |
| d1saca_ | 204 | Serum amyloid P component (SAP) {Human (Homo sapie | 97.17 | |
| d1a8da1 | 247 | Tetanus neurotoxin {Clostridium tetani [TaxId: 151 | 97.06 | |
| d1epwa1 | 218 | Botulinum neurotoxin {Clostridium botulinum, serot | 96.48 | |
| d2erfa1 | 206 | Thrombospondin 1 N-terminal domain {Human (Homo sa | 92.06 | |
| d2ah2a1 | 225 | Trypanosoma sialidase, C-terminal domain {Parasiti | 91.3 | |
| d3btaa1 | 207 | Botulinum neurotoxin {Clostridium botulinum, serot | 90.22 | |
| d2r1da1 | 177 | Ligand-binding domain of neurexin 1beta {Rat (Ratt | 89.43 | |
| d1dyka1 | 189 | Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: | 86.42 | |
| d1dyka2 | 185 | Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: | 86.14 | |
| d1pz7a_ | 195 | Agrin {Chicken (Gallus gallus) [TaxId: 9031]} | 85.72 | |
| d1h30a1 | 191 | Growth-arrest-specific protein Gas6 {Human (Homo s | 80.1 | |
| d1d2sa_ | 170 | Sex hormone-binding globulin {Human (Homo sapiens) | 80.04 |
| >d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Calpain large subunit, catalytic domain (domain II) domain: Calpain large subunit, catalytic domain (domain II) species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]
Probab=100.00 E-value=1.3e-67 Score=598.32 Aligned_cols=296 Identities=39% Similarity=0.747 Sum_probs=253.9
Q ss_pred HHHHHHHhcCCCceecCCCCCCCCCcccCCCCCCccccCcceeeccccccccCccCCCceeecCCCCCCCcccCCCCCch
Q 000112 1693 AVKEALSARGERQFTDHEFPPDDQSLYVDPGNPPSKLQVVAEWMRPSEIVKESRLDCQPCLFSGAVNPSDVCQGRLGDCW 1772 (2161)
Q Consensus 1693 aIKE~L~arGe~~FeDpEFPPsdsSLy~Dp~~P~sklq~~IqWkRPsEI~~e~~~ds~P~LF~ggIsPsDVkQG~LGDCW 1772 (2161)
+|++.|.++| .+|+|++|||++.||+.++..+..+....++|+||+||++ +|++|.++++|.||+||.+||||
T Consensus 12 ~i~~~c~~~~-~~f~D~~Fpp~~~Sl~~~~~~~~~~~~~~i~W~Rp~e~~~------~~~~~~~~~~~~di~QG~lgDC~ 84 (322)
T d2r9fa1 12 NLRARCLQNG-VLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLS------NPQFIVDGATRTDICQGALGDCW 84 (322)
T ss_dssp HHHHHHHHTT-CCCCCTTSCSSHHHHCSSTTSTTSHHHHHCEEECHHHHCS------SCBSCSSCSCGGGCBCCSSSCHH
T ss_pred HHHHHHHHcC-CeeECcCCcCCccccccCcCCccccccCCcEEECcHHhcC------CCeEEeCCCCcccccCCCcCCEE
Confidence 4566676665 6899999999999998765444434444579999999985 57899999999999999999999
Q ss_pred HHHHHHHHhccccccccccC----cccCCCCcEEEEEeeCCEEEEEEecccccCCCCCceEEeecCCCCchhHHHHHHHH
Q 000112 1773 FLSAVAVLTEVSQISEVIIT----PEYNEEGIYTVRFCIQGEWVPVVVDDWIPCESPGKPAFATSKKGHELWVSILEKAY 1848 (2161)
Q Consensus 1773 FLAALAALAE~PrLle~fIt----PeyNe~GiY~VRLyiNGeWreVVVDDrLPc~~nGkPLFArSsd~nELWpSLLEKAY 1848 (2161)
|+|||++||++|.+++++++ +..++.|+|+||||++|+|+.|+|||+|||. +|+|+|+++.+++|+|++||||||
T Consensus 85 llsal~~la~~~~~~~~i~~~~~~~~~~~~G~y~v~l~~~G~w~~V~VDD~lP~~-~g~~~~~~~~~~~e~W~~LlEKAy 163 (322)
T d2r9fa1 85 LLAAIASLTLNETILHRVVPYGQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLPTK-DGKLVFVHSAQGNEFWSALLEKAY 163 (322)
T ss_dssp HHHHHHHHTTCHHHHHHHSCSCCCSSTTCCSEEEEEEEETTEEEEEEEESCEEEE-TTEESSCBCSSTTBCHHHHHHHHH
T ss_pred HHHHHHHHHcChhhhhccCCcCcccccCcceeEEEEEeeCCeeEEEEecCceecc-CCCEeeeecCCCCccHHHHHHHHH
Confidence 99999999999987766653 2346789999999999999999999999995 789999999888999999999999
Q ss_pred HHhcCCcccccCCChHHHHhhccCCcceeecccchhhhhccchhHHHHHHHHHhcCCCEEEeeCCCCC---CccccccCc
Q 000112 1849 AKLHGSYEALEGGLVQDALVDLTGGAGEEIDMRSAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGS---DVHISSSGI 1925 (2161)
Q Consensus 1849 AKLhGSYeaLeGG~~sEAL~DLTGgP~E~IDL~saeaq~Dl~sdeLWk~LlsalksG~LMgAsTpsgs---D~e~es~GL 1925 (2161)
||+||||++|+||++.+||++|||++++.+++++. .+++|+.|.++.++|++++|++.... .......||
T Consensus 164 AKl~GsY~~l~gG~~~~aL~~LTG~~~~~~~~~~~-------~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~e~~~~~GL 236 (322)
T d2r9fa1 164 AKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKA-------PSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNL 236 (322)
T ss_dssp HHHHTSSGGGSSCCHHHHHHHTTCCEEEEEEGGGC-------CTTHHHHHHHHHHHTCEEEEECCCSSSSTTCSBCTTSC
T ss_pred HHHhCCccccCCCCHHHHHHHhcCCCcEEEEcccC-------chhHHHHHHHHHHCCCceEEEEecCCccchhhhhhcCC
Confidence 99999999999999999999999999999987643 34699999999999999999865432 123356799
Q ss_pred ccCceeEEEEEEEEc--C--eEEEEEecCCCCCccccCCCCCCCccccHH---HHhhhCCCCCCCCCeeecchhhHhhcc
Q 000112 1926 VQGHAYSILQVREVD--G--HKLVQIRNPWANEVEWNGPWSDSSPEWTDR---MKHKLKHVPQSKDGIFWMSWQDFQIHF 1998 (2161)
Q Consensus 1926 VsGHAYSVLdV~EVd--G--~RLVRLRNPWG~~~EWKG~WSD~S~eWTee---LKkkL~~~p~sDDGtFWMSfEDFLkyF 1998 (2161)
+.+|||+|++++++. + .+|||||||||+ .||+|+|||+|++|++. .+..+. ...+||+|||+|+||++||
T Consensus 237 v~~HaYsVl~v~~~~~~~~~~~Lv~LRNPwg~-~ew~G~ws~~s~~W~~~~~~~~~~~~--~~~ddG~FWms~~df~~~F 313 (322)
T d2r9fa1 237 VRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGE-VEWKGPWSDNSYEWNKVDPYEREQLR--VKMEDGEFWMSFRDFIREF 313 (322)
T ss_dssp BTTCCEEEEEEEEEEETTEEEEEEEEECTTSC-CCCCSTTSTTCGGGGGSCHHHHHHHC--CCCCSSEEEEEHHHHHHHC
T ss_pred cCCcceEEEEEEEEeeCCCcEEEEEEECCCCC-CcccCCCCCCChhhccCCHHHHHhcC--CCCCCCEEEeEHHHHHHhC
Confidence 999999999998863 3 589999999996 79999999999999863 334443 3468999999999999999
Q ss_pred cceeEEEE
Q 000112 1999 RSIYVCRV 2006 (2161)
Q Consensus 1999 ssIyICrl 2006 (2161)
++++||++
T Consensus 314 ~~v~vC~~ 321 (322)
T d2r9fa1 314 TKLEICNL 321 (322)
T ss_dssp CEEEEEEC
T ss_pred CceEEEeC
Confidence 99999986
|
| >d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain (domain II) {Human (Homo sapiens), calpain 9 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} | Back information, alignment and structure |
|---|
| >d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} | Back information, alignment and structure |
|---|
| >d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} | Back information, alignment and structure |
|---|
| >d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ah2a1 b.29.1.15 (A:409-633) Trypanosoma sialidase, C-terminal domain {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} | Back information, alignment and structure |
|---|
| >d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} | Back information, alignment and structure |
|---|
| >d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|