BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000113
(2159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 272 bits (695), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/368 (42%), Positives = 223/368 (60%), Gaps = 27/368 (7%)
Query: 163 VQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETR-------FTFDHIACEMIS 215
V+V++R RP++ EK + Y + + D V + +P+ FTFD +
Sbjct: 23 VRVVVRCRPMNGKEKAAS-YDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAK 81
Query: 216 QEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIF 275
Q +L+ P+V++ L G+N +FAYGQTG+GKTYTM G + E + G+ P F
Sbjct: 82 QFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKR-----GVIPNSF 136
Query: 276 EYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTN-LQLREDLKKGVYVE 334
+++F+ I R + ++ + S+LEIY E+I DLL T L+L+E GVYV+
Sbjct: 137 DHIFTHIS------RSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVK 190
Query: 335 NLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIE-SHWEKDSMTHFR 393
+L+ + K+V ++ ++ G NR + AT MN SSRSH++ IE S D H R
Sbjct: 191 DLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIR 250
Query: 394 FARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRD 453
+LNLVDLAGSERQ +GA+G+RLKEA IN SLS LG VI +LVD GK H+PYRD
Sbjct: 251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVD---GKSTHIPYRD 307
Query: 454 SRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGDV 513
S+LT LLQDSLGGN+KT ++ANV P+ + ETL+TL++A RAK I+N +VNE+
Sbjct: 308 SKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPK--- 364
Query: 514 TALQRQIQ 521
AL R+ Q
Sbjct: 365 DALLREFQ 372
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 268 bits (685), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/358 (43%), Positives = 218/358 (60%), Gaps = 38/358 (10%)
Query: 161 HNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPET----------RFTFDHIA 210
++++V+ R RP + +E S G Q +V P+T FTFD +
Sbjct: 6 NSIKVVARFRPQNRVEIESGG----------QPIVTFQGPDTCTVDSKEAQGSFTFDRVF 55
Query: 211 CEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG-EINEVEGKLNDDCG 269
Q +F + P V++ L+GYN +FAYGQTG+GK+YTMMG I++ +G+ G
Sbjct: 56 DMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGR-----G 110
Query: 270 ITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLREDLKK 329
+ PRI E +F+ I N ++++ + S++EIY E+I DLL P + NL + E+ +
Sbjct: 111 VIPRIVEQIFTSILSSAAN-----IEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNR 165
Query: 330 GVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLT-CIIESHWEKDS 388
GVYV+ L E V +V +V +++ +G R +AAT MN ESSRSHS+ I + + E S
Sbjct: 166 GVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGS 225
Query: 389 MTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRH 448
+ +L LVDLAGSE+ +GA G L+EA INKSLS LG+VI +L D GK H
Sbjct: 226 A---KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTD---GKSSH 279
Query: 449 VPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVN 506
VPYRDS+LT +LQ+SLGGNS+TT+I N SPS + ETLSTL+F RAK I+N AKVN
Sbjct: 280 VPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVN 337
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 266 bits (679), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 216/359 (60%), Gaps = 31/359 (8%)
Query: 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETR------------FTFDHI 209
N++V++R RPL N + + + ++ D A V + PE FTFD +
Sbjct: 5 NIKVIVRCRPL-NARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAV 63
Query: 210 ACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCG 269
+ +F+ + P+++ L G+NS +FAYGQTG+GKT+TM G ++ G
Sbjct: 64 YDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGN--------KEEPG 115
Query: 270 ITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLREDLKK 329
P F++LF I N+ F S+LE+YNE+I DL++ ++T L L+ED +
Sbjct: 116 AIPNSFKHLFDAINSSSSNQ-----NFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTR 169
Query: 330 GVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSM 389
G+YV+ L+ + V T ++ L+ +G ANR +AAT MN SSRSHS+ IE ++
Sbjct: 170 GIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENK 229
Query: 390 THFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHV 449
R +LNLVDLAGSERQ +GA G+ L E A IN SLS LGLVI LV+ A H+
Sbjct: 230 EVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT----HI 285
Query: 450 PYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNEN 508
PYRDS+LT LLQDSLGGNSKT + AN+SP+ + +ET+STL++A RAK I+N ++NE+
Sbjct: 286 PYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINED 344
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 263 bits (671), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/361 (41%), Positives = 218/361 (60%), Gaps = 41/361 (11%)
Query: 163 VQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVW------------LGHPETRFTFDHIA 210
V+V +RIRP++ E + + +C+ A ++ G P+ F +DH
Sbjct: 3 VKVAVRIRPMNRRE--TDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKV-FAYDHCF 59
Query: 211 CEM--------ISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEG 262
M Q+ +F+ G +++N GYN+C+FAYGQTGSGK+YTMMG
Sbjct: 60 WSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA----- 114
Query: 263 KLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST--N 320
D G+ PR+ LF R + EE +E F + S++EIYNE++ DLL+P +
Sbjct: 115 ---DQPGLIPRLCSGLFERTQKEE----NEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQT 167
Query: 321 LQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCII 380
L++RE G YV+ L++ V + D+ L+ +G +R +AAT MN ESSRSH+V +
Sbjct: 168 LKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITL 227
Query: 381 ES--HWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSL 438
+ K + + +L+LVDLAGSER +GA GDRLKE +NINKSL+TLGLVI +L
Sbjct: 228 THTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISAL 287
Query: 439 VDSAQGKHRH--VPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRA 496
D + GK+++ VPYRDS LT+LL+DSLGGNSKT ++A VSP+ + +ETLSTL++A RA
Sbjct: 288 ADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRA 347
Query: 497 K 497
K
Sbjct: 348 K 348
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 257 bits (657), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 233/377 (61%), Gaps = 36/377 (9%)
Query: 154 DPLFWKDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETR-----FTFD- 207
DP+ +V+V +R+RP ++ E +C+ Q + T + + + F+FD
Sbjct: 13 DPINMPGASVKVAVRVRPFNSREMSRDS--KCIIQMSGSTTTIVNPKQPKETPKSFSFDY 70
Query: 208 ----HIACEMI---SQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEV 260
H + E I SQ++++R G M+++ GYN C+FAYGQTG+GK+YTMMG+
Sbjct: 71 SYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK---- 126
Query: 261 EGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSS-T 319
+ D GI P++ E LFSRI + ++ + +S + S++EIY E++ DLL P +
Sbjct: 127 --QEKDQQGIIPQLCEDLFSRI----NDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKG 180
Query: 320 NLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCI 379
NL++RE G YVE+L++ V + ND+ L+ G R +AAT MN SSRSH+V I
Sbjct: 181 NLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNII 240
Query: 380 I--ESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMS 437
+ H + ++T + ++++LVDLAGSER S+GA+G RLKE ANINKSL+TLG VI +
Sbjct: 241 FTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISA 300
Query: 438 LVDSAQGKHR--------HVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLST 489
L + G ++ +PYRDS LT+LL+++LGGNS+T ++A +SP+ + +ETLST
Sbjct: 301 LAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLST 360
Query: 490 LKFAQRAKLIQNNAKVN 506
L++A RAK I+N VN
Sbjct: 361 LRYADRAKQIRNTVSVN 377
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 256 bits (653), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 160/391 (40%), Positives = 232/391 (59%), Gaps = 44/391 (11%)
Query: 139 NHEVSVDVEHFELVDDPLFWKDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLG 198
H S+D+ P + N+QV +R+RPL++ E RC++ +A+ + +G
Sbjct: 1 GHMASMDISGGNTSRQPQKKSNQNIQVYVRVRPLNSRE-------RCIR--SAEVVDVVG 51
Query: 199 HPET------------RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTG 246
E +FTFD Q ++ V P++E L+GYN +FAYGQTG
Sbjct: 52 PREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTG 111
Query: 247 SGKTYTMMG-EINEVEGKLNDD--CGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFL 303
+GKT+TM+G E E++ DD GI PR +LF +RM E ++++ + S+L
Sbjct: 112 TGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMME-------VEYTMRISYL 164
Query: 304 EIYNEQITDLLEPS-STNLQLRED-LKKG-VYVENLTEYNVKTVNDVVKLLLQGAANRKM 360
E+YNE++ DLL +T +++ +D KKG V ++ L E V + +DV KLL +G RK
Sbjct: 165 ELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKT 224
Query: 361 AATYMNSESSRSHSVLTCII---ESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAE-GD 416
A T MN++SSRSH+V + ++ E+ E + M + +LNLVDLAGSE +G E G
Sbjct: 225 ATTLMNAQSSRSHTVFSIVVHIRENGIEGEDM--LKIGKLNLVDLAGSENVSKAGNEKGI 282
Query: 417 RLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANV 476
R++E NIN+SL TLG VI +LVD A HVPYR+S+LT LLQ+SLGG +KT+IIA +
Sbjct: 283 RVRETVNINQSLLTLGRVITALVDRAP----HVPYRESKLTRLLQESLGGRTKTSIIATI 338
Query: 477 SPSMCSANETLSTLKFAQRAKLIQNNAKVNE 507
SP ETLSTL++A RAK IQN +VN+
Sbjct: 339 SPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 253 bits (647), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 229/368 (62%), Gaps = 36/368 (9%)
Query: 163 VQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETR-----FTFD-----HIACE 212
V+V +R+RP ++ E +C+ Q + T + + + F+FD H + E
Sbjct: 6 VKVAVRVRPFNSREMSRDS--KCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 213 MI---SQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCG 269
I SQ++++R G M+++ GYN C+FAYGQTG+GK+YTMMG+ + D G
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK------QEKDQQG 117
Query: 270 ITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSS-TNLQLREDLK 328
I P++ E LFSRI + ++ + +S + S++EIY E++ DLL P + NL++RE
Sbjct: 118 IIPQLCEDLFSRI----NDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPL 173
Query: 329 KGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCII--ESHWEK 386
G YVE+L++ V + ND+ L+ G R +AAT MN SSRSH+V I + H +
Sbjct: 174 LGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAE 233
Query: 387 DSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKH 446
++T + ++++LVDLAGSER S+GA+G RLKE ANINKSL+TLG VI +L + G +
Sbjct: 234 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 447 R--------HVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKL 498
+ +PYRDS LT+LL+++LGGNS+T ++A +SP+ + +ETLSTL++A RAK
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 353
Query: 499 IQNNAKVN 506
I+N VN
Sbjct: 354 IRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 253 bits (646), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 229/368 (62%), Gaps = 36/368 (9%)
Query: 163 VQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETR-----FTFD-----HIACE 212
V+V +R+RP ++ E +C+ Q + T + + + F+FD H + E
Sbjct: 6 VKVAVRVRPFNSREMSRDS--KCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 213 MI---SQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCG 269
I SQ++++R G M+++ GYN C+FAYGQTG+GK+YTMMG+ + D G
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK------QEKDQQG 117
Query: 270 ITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSS-TNLQLREDLK 328
I P++ E LFSRI + ++ + +S + S++EIY E++ DLL P + NL++RE
Sbjct: 118 IIPQLCEDLFSRI----NDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPL 173
Query: 329 KGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCII--ESHWEK 386
G YVE+L++ V + ND+ L+ G R +AAT MN SSRSH+V I + H +
Sbjct: 174 LGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAE 233
Query: 387 DSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKH 446
++T + ++++LVDLAGSER S+GA+G RLKE ANINKSL+TLG VI +L + G +
Sbjct: 234 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 447 R--------HVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKL 498
+ +PYRDS LT+LL+++LGGNS+T ++A +SP+ + +ETLSTL++A RAK
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 353
Query: 499 IQNNAKVN 506
I+N VN
Sbjct: 354 IRNTVSVN 361
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 253 bits (646), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 229/368 (62%), Gaps = 36/368 (9%)
Query: 163 VQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETR-----FTFD-----HIACE 212
V+V +R+RP ++ E +C+ Q + T + + + F+FD H + E
Sbjct: 6 VKVAVRVRPFNSREMSRDS--KCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 213 MI---SQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCG 269
I SQ++++R G M+++ GYN C+FAYGQTG+GK+YTMMG+ + D G
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK------QEKDQQG 117
Query: 270 ITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSS-TNLQLREDLK 328
I P++ E LFSRI + ++ + +S + S++EIY E++ DLL P + NL++RE
Sbjct: 118 IIPQLCEDLFSRI----NDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPL 173
Query: 329 KGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCII--ESHWEK 386
G YVE+L++ V + ND+ L+ G R +AAT MN SSRSH+V I + H +
Sbjct: 174 LGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAE 233
Query: 387 DSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKH 446
++T + ++++LVDLAGSER S+GA+G RLKE ANINKSL+TLG VI +L + G +
Sbjct: 234 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 447 R--------HVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKL 498
+ +PYRDS LT+LL+++LGGNS+T ++A +SP+ + +ETLSTL++A RAK
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 353
Query: 499 IQNNAKVN 506
I+N VN
Sbjct: 354 IRNTVSVN 361
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 219/366 (59%), Gaps = 30/366 (8%)
Query: 159 KDHNVQVLIRIRPLSNIEKVSQGYVRC----LKQDTAQTLVWLGHPETR--FTFDHIACE 212
K N+QV++R+RP + E+ + + ++++ + L +R +TFD +
Sbjct: 15 KGKNIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 74
Query: 213 MISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDD---CG 269
Q ++R P+++ + GYN+ +FAYGQTG+GKT+TM GE + E ++ G
Sbjct: 75 STKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAG 134
Query: 270 ITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST---NLQLRED 326
I PR +F ++ D +FS K S LEIYNE++ DLL PSS LQ+ +D
Sbjct: 135 IIPRTLHQIFEKLT-------DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 187
Query: 327 L--KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHW 384
K+GV ++ L E V ++V ++L +GAA R AAT MN+ SSRSHSV + I H
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI--HM 245
Query: 385 EKDSMTH---FRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDS 441
++ ++ + +LNLVDLAGSE SGA R +EA NIN+SL TLG VI +LV+
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE- 304
Query: 442 AQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQN 501
+ HVPYR+S+LT +LQDSLGG ++T+IIA +SP+ + ETLSTL++A RAK I N
Sbjct: 305 ---RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 502 NAKVNE 507
+VN+
Sbjct: 362 KPEVNQ 367
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 245 bits (625), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 220/367 (59%), Gaps = 32/367 (8%)
Query: 159 KDHNVQVLIRIRPLSNIEKVSQGY--VRC--LKQDTAQTLVWLGHPETR--FTFDHIACE 212
K N+QV++R RP + E+ + + V C ++++ + L +R +TFD +
Sbjct: 17 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 76
Query: 213 MISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE--INEVEGKLNDD--C 268
Q ++R P+++ + GYN +FAYGQTG+GKT+TM GE NE E +D
Sbjct: 77 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE-EYTWEEDPLA 135
Query: 269 GITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST---NLQLRE 325
GI PR +F ++ D +FS K S LEIYNE++ DLL PSS LQ+ +
Sbjct: 136 GIIPRTLHQIFEKLT-------DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 188
Query: 326 DL--KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESH 383
D K+GV ++ L E V ++V ++L +GAA R AAT MN+ SSRSHSV + I H
Sbjct: 189 DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI--H 246
Query: 384 WEKDSMTH---FRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVD 440
++ ++ + +LNLVDLAGSE SGA R +EA NIN+SL TLG VI +LV+
Sbjct: 247 MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE 306
Query: 441 SAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQ 500
+ HVPYR+S+LT +LQDSLGG ++T+IIA +SP+ + ETLSTL++A RAK I
Sbjct: 307 ----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 362
Query: 501 NNAKVNE 507
N +VN+
Sbjct: 363 NKPEVNQ 369
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 244 bits (624), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 220/367 (59%), Gaps = 32/367 (8%)
Query: 159 KDHNVQVLIRIRPLSNIEKVSQGY--VRC--LKQDTAQTLVWLGHPETR--FTFDHIACE 212
K N+QV++R RP + E+ + + V C ++++ + L +R +TFD +
Sbjct: 14 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 73
Query: 213 MISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE--INEVEGKLNDD--C 268
Q ++R P+++ + GYN +FAYGQTG+GKT+TM GE NE E +D
Sbjct: 74 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE-EYTWEEDPLA 132
Query: 269 GITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST---NLQLRE 325
GI PR +F ++ D +FS K S LEIYNE++ DLL PSS LQ+ +
Sbjct: 133 GIIPRTLHQIFEKLT-------DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 185
Query: 326 DL--KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESH 383
D K+GV ++ L E V ++V ++L +GAA R AAT MN+ SSRSHSV + I H
Sbjct: 186 DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI--H 243
Query: 384 WEKDSMTH---FRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVD 440
++ ++ + +LNLVDLAGSE SGA R +EA NIN+SL TLG VI +LV+
Sbjct: 244 MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE 303
Query: 441 SAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQ 500
+ HVPYR+S+LT +LQDSLGG ++T+IIA +SP+ + ETLSTL++A RAK I
Sbjct: 304 ----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 359
Query: 501 NNAKVNE 507
N +VN+
Sbjct: 360 NKPEVNQ 366
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 244 bits (624), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 220/367 (59%), Gaps = 32/367 (8%)
Query: 159 KDHNVQVLIRIRPLSNIEKVSQGY--VRC--LKQDTAQTLVWLGHPETR--FTFDHIACE 212
K N+QV++R RP + E+ + + V C ++++ + L +R +TFD +
Sbjct: 15 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 74
Query: 213 MISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE--INEVEGKLNDD--C 268
Q ++R P+++ + GYN +FAYGQTG+GKT+TM GE NE E +D
Sbjct: 75 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE-EYTWEEDPLA 133
Query: 269 GITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST---NLQLRE 325
GI PR +F ++ D +FS K S LEIYNE++ DLL PSS LQ+ +
Sbjct: 134 GIIPRTLHQIFEKLT-------DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 186
Query: 326 DL--KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESH 383
D K+GV ++ L E V ++V ++L +GAA R AAT MN+ SSRSHSV + I H
Sbjct: 187 DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI--H 244
Query: 384 WEKDSMTH---FRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVD 440
++ ++ + +LNLVDLAGSE SGA R +EA NIN+SL TLG VI +LV+
Sbjct: 245 MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE 304
Query: 441 SAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQ 500
+ HVPYR+S+LT +LQDSLGG ++T+IIA +SP+ + ETLSTL++A RAK I
Sbjct: 305 ----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 360
Query: 501 NNAKVNE 507
N +VN+
Sbjct: 361 NKPEVNQ 367
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 244 bits (624), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 220/367 (59%), Gaps = 32/367 (8%)
Query: 159 KDHNVQVLIRIRPLSNIEKVSQGY--VRC--LKQDTAQTLVWLGHPETR--FTFDHIACE 212
K N+QV++R RP + E+ + + V C ++++ + L +R +TFD +
Sbjct: 15 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 74
Query: 213 MISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE--INEVEGKLNDD--C 268
Q ++R P+++ + GYN +FAYGQTG+GKT+TM GE NE E +D
Sbjct: 75 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE-EYTWEEDPLA 133
Query: 269 GITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST---NLQLRE 325
GI PR +F ++ D +FS K S LEIYNE++ DLL PSS LQ+ +
Sbjct: 134 GIIPRTLHQIFEKLT-------DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 186
Query: 326 DL--KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESH 383
D K+GV ++ L E V ++V ++L +GAA R AAT MN+ SSRSHSV + I H
Sbjct: 187 DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI--H 244
Query: 384 WEKDSMTH---FRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVD 440
++ ++ + +LNLVDLAGSE SGA R +EA NIN+SL TLG VI +LV+
Sbjct: 245 MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE 304
Query: 441 SAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQ 500
+ HVPYR+S+LT +LQDSLGG ++T+IIA +SP+ + ETLSTL++A RAK I
Sbjct: 305 ----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 360
Query: 501 NNAKVNE 507
N +VN+
Sbjct: 361 NKPEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 244 bits (623), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 220/367 (59%), Gaps = 32/367 (8%)
Query: 159 KDHNVQVLIRIRPLSNIEKVSQGY--VRC--LKQDTAQTLVWLGHPETR--FTFDHIACE 212
K N+QV++R RP + E+ + + V C ++++ + L +R +TFD +
Sbjct: 6 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 65
Query: 213 MISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE--INEVEGKLNDD--C 268
Q ++R P+++ + GYN +FAYGQTG+GKT+TM GE NE E +D
Sbjct: 66 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE-EYTWEEDPLA 124
Query: 269 GITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST---NLQLRE 325
GI PR +F ++ D +FS K S LEIYNE++ DLL PSS LQ+ +
Sbjct: 125 GIIPRTLHQIFEKLT-------DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 177
Query: 326 DL--KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESH 383
D K+GV ++ L E V ++V ++L +GAA R AAT MN+ SSRSHSV + I H
Sbjct: 178 DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI--H 235
Query: 384 WEKDSMTH---FRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVD 440
++ ++ + +LNLVDLAGSE SGA R +EA NIN+SL TLG VI +LV+
Sbjct: 236 MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE 295
Query: 441 SAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQ 500
+ HVPYR+S+LT +LQDSLGG ++T+IIA +SP+ + ETLSTL++A RAK I
Sbjct: 296 ----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 351
Query: 501 NNAKVNE 507
N +VN+
Sbjct: 352 NKPEVNQ 358
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 244 bits (623), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 219/366 (59%), Gaps = 30/366 (8%)
Query: 159 KDHNVQVLIRIRPLSNIEKVSQGY--VRC--LKQDTAQTLVWLGHPETR--FTFDHIACE 212
K N+QV++R RP + E+ + + V C ++++ + L +R +TFD +
Sbjct: 15 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 74
Query: 213 MISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDD---CG 269
Q ++R P+++ + GYN +FAYGQTG+GKT+TM GE + E ++ G
Sbjct: 75 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAG 134
Query: 270 ITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST---NLQLRED 326
I PR +F ++ D +FS K S LEIYNE++ DLL PSS LQ+ +D
Sbjct: 135 IIPRTLHQIFEKLT-------DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 187
Query: 327 L--KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHW 384
K+GV ++ L E V ++V ++L +GAA R AAT MN+ SSRSHSV + I H
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI--HM 245
Query: 385 EKDSMTH---FRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDS 441
++ ++ + +LNLVDLAGSE SGA R +EA NIN+SL TLG VI +LV+
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE- 304
Query: 442 AQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQN 501
+ HVPYR+S+LT +LQDSLGG ++T+IIA +SP+ + ETLSTL++A RAK I N
Sbjct: 305 ---RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 502 NAKVNE 507
+VN+
Sbjct: 362 KPEVNQ 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 244 bits (622), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 220/367 (59%), Gaps = 32/367 (8%)
Query: 159 KDHNVQVLIRIRPLSNIEKVSQGY--VRC--LKQDTAQTLVWLGHPETR--FTFDHIACE 212
K N+QV++R RP + E+ + + V C ++++ + L +R +TFD +
Sbjct: 15 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 74
Query: 213 MISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE--INEVEGKLNDDC-- 268
Q ++R P+++ + GYN +FAYGQTG+GKT+TM GE NE E +D
Sbjct: 75 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE-EYTWEEDPLD 133
Query: 269 GITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST---NLQLRE 325
GI PR +F ++ D +FS K S LEIYNE++ DLL PSS LQ+ +
Sbjct: 134 GIIPRTLHQIFEKLT-------DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 186
Query: 326 DL--KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESH 383
D K+GV ++ L E V ++V ++L +GAA R AAT MN+ SSRSHSV + I H
Sbjct: 187 DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI--H 244
Query: 384 WEKDSMTH---FRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVD 440
++ ++ + +LNLVDLAGSE SGA R +EA NIN+SL TLG VI +LV+
Sbjct: 245 MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE 304
Query: 441 SAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQ 500
+ HVPYR+S+LT +LQDSLGG ++T+IIA +SP+ + ETLSTL++A RAK I
Sbjct: 305 ----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 360
Query: 501 NNAKVNE 507
N +VN+
Sbjct: 361 NKPEVNQ 367
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 241 bits (615), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 215/380 (56%), Gaps = 50/380 (13%)
Query: 163 VQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPET-------RFTFDHIACEMIS 215
++V+ R RPLS E+ + G+ + L D V L +P FTFD +
Sbjct: 23 LKVVARCRPLSRKEEAA-GHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASSK 81
Query: 216 QEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIF 275
Q L+ P++++ L G+N +FAYGQTG+GKTYTM G E E + G+ P F
Sbjct: 82 QADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELR-----GVIPNAF 136
Query: 276 EYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLL--EPSSTNLQLREDLKKGVYV 333
E++F+ I R + ++ + S+LEIY E+I DLL EP L+L+E+ + GVY+
Sbjct: 137 EHIFTHIS------RSQNQQYLVRASYLEIYQEEIRDLLSKEPGK-RLELKENPETGVYI 189
Query: 334 ENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIE-SHWEKDSMTHF 392
++L+ + K V ++ ++ G R + +T+MN SSRSH++ +E S D H
Sbjct: 190 KDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHI 249
Query: 393 RFARLNLVDLAGSERQKSSG---AEG---------------------DRLKEAANINKSL 428
R +LNLVDLAGSERQ +G A G +R KEA+ IN SL
Sbjct: 250 RVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSL 309
Query: 429 STLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLS 488
S LG VI +L A + H+PYRDS+LT LLQDSLGGN+KT ++A + P+ S +E+LS
Sbjct: 310 SALGNVIAAL---AGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLS 366
Query: 489 TLKFAQRAKLIQNNAKVNEN 508
TL+FA RAK I+N +VNE+
Sbjct: 367 TLRFANRAKNIKNKPRVNED 386
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 241 bits (614), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 148/345 (42%), Positives = 205/345 (59%), Gaps = 20/345 (5%)
Query: 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFR 221
N++V+ R RPL N +V++G K T+V P + FD + SQE+++
Sbjct: 8 NIKVMCRFRPL-NESEVNRGDKYIAKFQGEDTVVIASKP---YAFDRVFQSSTSQEQVYN 63
Query: 222 VAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSR 281
+V++ L GYN +FAYGQT SGKT+TM G++++ EG GI PRI + +F+
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM-----GIIPRIVQDIFNY 118
Query: 282 IRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTEYNV 341
I DE L+F K S+ EIY ++I DLL+ S TNL + ED + YV+ TE V
Sbjct: 119 IY-----SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFV 173
Query: 342 KTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLNLVD 401
+ ++V+ + +G +NR +A T MN SSRSHS+ +I E +L LVD
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIF--LINVKQENTQTEQKLSGKLYLVD 231
Query: 402 LAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQ 461
LAGSE+ +GAEG L EA NINKSLS LG VI +L + + +VPYRDS++T +LQ
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST----YVPYRDSKMTRILQ 287
Query: 462 DSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVN 506
DSLGGN +TTI+ SPS + +ET STL F QRAK I+N VN
Sbjct: 288 DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 238 bits (606), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 150/358 (41%), Positives = 215/358 (60%), Gaps = 32/358 (8%)
Query: 162 NVQVLIRIRPLSNIEKVSQGY--VRC--LKQDTAQTLVWLGHPETR--FTFDHIACEMIS 215
N+QV++R RP + E+ + + V C ++++ + L +R +TFD +
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 216 QEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE--INEVEGKLNDD--CGIT 271
Q ++R P+++ + GYN +FAYGQTG+GKT+TM GE NE E +D GI
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNE-EYTWEEDPLAGII 121
Query: 272 PRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST---NLQLREDL- 327
PR +F ++ D +FS K S LEIYNE++ DLL PSS LQ+ +D
Sbjct: 122 PRTLHQIFEKLT-------DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 174
Query: 328 -KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEK 386
K+GV ++ L E V ++V ++L +GAA R AAT MN+ SSRSHSV + I H ++
Sbjct: 175 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI--HMKE 232
Query: 387 DSMTH---FRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQ 443
++ + +LNLVDLAGSE SGA R +EA NIN+SL TLG VI +LV+
Sbjct: 233 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE--- 289
Query: 444 GKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQN 501
+ HVPYR+S+LT +LQDSLGG ++T+IIA +SP+ + ETLSTL++A RAK I N
Sbjct: 290 -RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 346
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 238 bits (606), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 204/345 (59%), Gaps = 20/345 (5%)
Query: 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFR 221
N++V+ R RPL N +V++G K T++ P + FD + SQE+++
Sbjct: 8 NIKVMCRFRPL-NESEVNRGDKYVAKFQGEDTVMIASKP---YAFDRVFQSSTSQEQVYN 63
Query: 222 VAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSR 281
+V++ L GYN +FAYGQT SGK +TM G++++ EG GI PRI + +F+
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGM-----GIIPRIVQDIFNY 118
Query: 282 IRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTEYNV 341
I DE L+F K S+ EIY ++I DLL+ S TNL + ED + YV+ TE V
Sbjct: 119 IY-----SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFV 173
Query: 342 KTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLNLVD 401
+ ++V+ + +G +NR +A T MN SSRSHS+ +I E +L LVD
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIF--LINVKQENTQTEQKLSGKLYLVD 231
Query: 402 LAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQ 461
LAGSE+ +GAEG L EA NINKSLS LG VI +L + + +VPYRDS++T +LQ
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST----YVPYRDSKMTRILQ 287
Query: 462 DSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVN 506
DSLGGN +TTI+ SPS + +ET STL F QRAK I+N VN
Sbjct: 288 DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 236 bits (601), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 145/338 (42%), Positives = 201/338 (59%), Gaps = 20/338 (5%)
Query: 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFR 221
N++V+ R RPL N +V++G K T+V P + FD + SQE+++
Sbjct: 8 NIKVMCRFRPL-NESEVNRGDKYIAKFQGEDTVVIASKP---YAFDRVFQSSTSQEQVYN 63
Query: 222 VAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSR 281
+V++ L GYN +FAYGQT SGKT+TM G++++ EG GI PRI + +F+
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM-----GIIPRIVQDIFNY 118
Query: 282 IRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTEYNV 341
I DE L+F K S+ EIY ++I DLL+ S TNL + ED + YV+ TE V
Sbjct: 119 IY-----SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFV 173
Query: 342 KTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLNLVD 401
+ ++V+ + +G +NR +A T MN SSRSHS+ +I E +L LVD
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIF--LINVKQENTQTEQKLSGKLYLVD 231
Query: 402 LAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQ 461
LAGSE+ +GAEG L EA NINKSLS LG VI +L + + +VPYRDS++T +LQ
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST----YVPYRDSKMTRILQ 287
Query: 462 DSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLI 499
DSLGGN +TTI+ SPS + +ET STL F QRAK I
Sbjct: 288 DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 236 bits (601), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/348 (41%), Positives = 201/348 (57%), Gaps = 22/348 (6%)
Query: 163 VQVLIRIRPLSNIE-KVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFR 221
++V+ R RPL++ E K +V + + + + + FD + SQEK++
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG--KVYLFDKVFKPNASQEKVYN 70
Query: 222 VAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDC--GITPRIFEYLF 279
A +V + L+GYN +FAYGQT SGKT+TM EG + D GI PRI +F
Sbjct: 71 EAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM-------EGVIGDSVKQGIIPRIVNDIF 123
Query: 280 SRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTEY 339
+ I E N L+F K S+ EIY ++I DLL+ S NL + ED + YV+ TE
Sbjct: 124 NHIYAMEVN-----LEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATER 178
Query: 340 NVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLNL 399
V + DV +++ +G +NR +A T MN SSRSHSV +I E +L L
Sbjct: 179 FVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVF--LINVKQENLENQKKLSGKLYL 236
Query: 400 VDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFL 459
VDLAGSE+ +GAEG L EA NINKSLS LG VI +L D G H+PYRDS+LT +
Sbjct: 237 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALAD---GNKTHIPYRDSKLTRI 293
Query: 460 LQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNE 507
LQ+SLGGN++TTI+ SP+ + +ET STL F +RAK ++N VNE
Sbjct: 294 LQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNE 341
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 223 bits (568), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 141/345 (40%), Positives = 201/345 (58%), Gaps = 23/345 (6%)
Query: 163 VQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFRV 222
V+V +R+RPL E + G+ CL+ + V LG + F F + E QE +++
Sbjct: 13 VRVALRVRPLLPKELL-HGHQSCLQVEPGLGRVTLGR-DRHFGFHVVLAEDAGQEAVYQA 70
Query: 223 AGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRI 282
P++E G+N+ +FAYGQTGSGKTYTM GE + V L D+ GI PR F I
Sbjct: 71 CVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEAS-VASLLEDEQGIVPRAMAEAFKLI 128
Query: 283 RMEEENRRDERLKFSC--KCSFLEIYNEQITDLLE--PSSTNLQLREDLKKGVYVENLTE 338
DE C S+LE+Y E+ DLLE +S ++QLRED + V + + E
Sbjct: 129 --------DENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKE 180
Query: 339 YNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIE------SHWEKDSMTHF 392
+V+ +++V+ LL G A R AT++N SSRSH+V T +E S + +
Sbjct: 181 VDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQL 240
Query: 393 RFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYR 452
++ + VDLAGSER +G+ G+RLKE+ IN SL LG VI +L D Q + H+PYR
Sbjct: 241 LVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDP-QRRGSHIPYR 299
Query: 453 DSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAK 497
DS++T +L+DSLGGN+KT +IA VSPS +ETL+TL +A RA+
Sbjct: 300 DSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/351 (39%), Positives = 198/351 (56%), Gaps = 26/351 (7%)
Query: 163 VQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFRV 222
V V +R+RPL++ E+ S G + T +++ F FD + + + ++
Sbjct: 6 VAVCVRVRPLNSREE-SLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEE 64
Query: 223 AGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRI 282
P++++ + GYN +FAYGQT SGKTYTMMG D G+ PR +F +I
Sbjct: 65 IAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGS--------EDHLGVIPRAIHDIFQKI 116
Query: 283 RMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST--NLQLREDLKKGVYVENLTEYN 340
+ + +F + S++EIYNE ITDLL + L +RED+ + VYV +LTE
Sbjct: 117 KKFPDR------EFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEV 170
Query: 341 VKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTH----FRFAR 396
V T +K + +G +R T MN SSRSH++ I+ES EK ++ + +
Sbjct: 171 VYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESR-EKGEPSNCEGSVKVSH 229
Query: 397 LNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRL 456
LNLVDLAGSER +GA G RLKE NIN+SL LG VI L D G + YRDS+L
Sbjct: 230 LNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGG--FINYRDSKL 287
Query: 457 TFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNE 507
T +LQ+SLGGN+KT II ++P S +ETL+ L+FA AK ++N VNE
Sbjct: 288 TRILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAKYMKNTPYVNE 336
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 219 bits (558), Expect = 1e-56, Method: Composition-based stats.
Identities = 147/358 (41%), Positives = 204/358 (56%), Gaps = 56/358 (15%)
Query: 201 ETRFTFD-----------HIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGK 249
E FTFD H A +QE ++ G +++ GY++C+FAYGQTGSGK
Sbjct: 95 EKSFTFDKSFWSHNTEDEHYA----TQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGK 150
Query: 250 TYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQ 309
+YTMMG D G+ PR E LF RI ++ + + ++ K S+ E+YNE
Sbjct: 151 SYTMMGT--------PDQPGLIPRTCEDLFQRIASAQDETPN--ISYNVKVSYFEVYNEH 200
Query: 310 ITDLLEPSSTN-----LQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATY 364
+ DLL P N L++RE +G YV++LTE V+ + ++++ + G +R +A+T
Sbjct: 201 VRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTK 260
Query: 365 MNSESSRSHSVLTCI---IESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEA 421
MN SSRSH+V T + I E D T R +R+ LVDLAGSER KS+ A G RL+E
Sbjct: 261 MNDTSSRSHAVFTIMLKQIHHDLETDDTTE-RSSRIRLVDLAGSERAKSTEATGQRLREG 319
Query: 422 ANINKSLSTLGLVIMSLVDSAQGKHRH------------------VPYRDSRLTFLLQDS 463
+NINKSL+TLG VI +L D R VPYRDS LT+LL+DS
Sbjct: 320 SNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDS 379
Query: 464 LGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGDVTALQRQIQ 521
LGGNSKT +IA +SP+ +ETLSTL++A +AK I+ A VN+ V+A +R Q
Sbjct: 380 LGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQ--VDGVSAAERDAQ 433
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 212/362 (58%), Gaps = 39/362 (10%)
Query: 161 HNVQVLIRIRPLSNIEKVSQGYVRCL----------------------KQDTAQTLVWLG 198
H+++V++R+RP + EK + G+ + + K+ T Q ++
Sbjct: 10 HHMKVVVRVRPENTKEKAA-GFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQ 68
Query: 199 HPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEIN 258
+ + +F FD + E +Q ++F P++ + L+GYN + AYG TG+GKT+TM+G
Sbjct: 69 NKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA- 127
Query: 259 EVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSS 318
D+ G+ +L+ M+E ++E++ S S+LE+YNEQI DLL S
Sbjct: 128 -------DEPGVMYLTMLHLYKC--MDE--IKEEKI-CSTAVSYLEVYNEQIRDLLVNSG 175
Query: 319 TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTC 378
L +RED +KGV V LT + K+ +++ LL G NR T MN+ SSRSH+V
Sbjct: 176 P-LAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQI 234
Query: 379 IIESHWEKDSMT-HFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMS 437
+ + S+ + R A+++L+DLAGSER +SGA+G R E NIN+SL LG VI +
Sbjct: 235 YLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINA 294
Query: 438 LVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAK 497
L DS + K++H+PYR+S+LT LL+DSLGGN +T +IA VSPS ++T +TLK+A RAK
Sbjct: 295 LADSKR-KNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAK 353
Query: 498 LI 499
I
Sbjct: 354 DI 355
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 215 bits (547), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 203/347 (58%), Gaps = 28/347 (8%)
Query: 163 VQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLV---WLGHPETRFTFDHIACEMISQEKL 219
++V RIRPL+ EK S + + + V W + +D + SQ+ +
Sbjct: 15 IRVYCRIRPLN--EKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQDDI 72
Query: 220 FRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLF 279
F +V++ + GYN C+FAYGQTGSGKT+T+ G + G+TPR + LF
Sbjct: 73 FEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGH--------ESNPGLTPRATKELF 123
Query: 280 SRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST---NLQLREDLKKGVYVENL 336
+ ++ R +R FS K +E+Y + + DLL P S L++++D K V+VEN+
Sbjct: 124 NILK-----RDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENV 178
Query: 337 TEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFAR 396
T + T+ ++ +L +G+ R ++ T MN ESSRSH +L+ +IES + + + R +
Sbjct: 179 TTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIES-IDLQTQSAAR-GK 236
Query: 397 LNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRL 456
L+ VDLAGSER K SG+ G++LKEA +INKSLS LG VI +L Q H+PYR+ +L
Sbjct: 237 LSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQ----HIPYRNHKL 292
Query: 457 TFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNA 503
T L+ DSLGGN+KT + NVSP+ + +ET ++L +A R + I N+
Sbjct: 293 TMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDP 339
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 200/347 (57%), Gaps = 30/347 (8%)
Query: 162 NVQVLIRIRPLSNIE----KVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQE 217
N++V+ R+RP++ + + + D+ L+ G P F D + SQ+
Sbjct: 5 NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKP-VSFELDKVFSPQASQQ 63
Query: 218 KLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEY 277
+F+ +V +C+ G+N C+FAYGQTG+GKTYTM G ++ GI R +
Sbjct: 64 DVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTA--------ENPGINQRALQL 114
Query: 278 LFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLL--EPS-STNLQLREDLKKGVYVE 334
LFS + +E D +++ S EIYNE + DLL EP ++L D +YV
Sbjct: 115 LFSEV---QEKASD--WEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVP 169
Query: 335 NLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRF 394
LTE+ V++V+D+ K+ G NR T +N SSRSH++L + D T R
Sbjct: 170 GLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRG---VDCSTGLRT 226
Query: 395 -ARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRD 453
+LNLVDLAGSER SGAEG RL+EA +INKSLS LG VI +L S QG HVP+R+
Sbjct: 227 TGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQG---HVPFRN 282
Query: 454 SRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQ 500
S+LT+LLQDSL G+SKT ++ VSP + +ETL +LKFA+R + ++
Sbjct: 283 SKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 199/345 (57%), Gaps = 23/345 (6%)
Query: 163 VQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFRV 222
V+V +R+RPL E + G+ CL+ + V LG + F F + E QE +++
Sbjct: 13 VRVALRVRPLLPKELL-HGHQSCLQVEPGLGRVTLGR-DRHFGFHVVLAEDAGQEAVYQA 70
Query: 223 AGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRI 282
P++E G+N+ +FAYGQTGSGKTYTM GE + V L D+ GI PR F I
Sbjct: 71 CVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEAS-VASLLEDEQGIVPRAMAEAFKLI 128
Query: 283 RMEEENRRDERLKFSC--KCSFLEIYNEQITDLLE--PSSTNLQLREDLKKGVYVENLTE 338
DE C S+LE+Y E+ DLLE +S ++QLRED + V + + E
Sbjct: 129 --------DENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKE 180
Query: 339 YNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIE------SHWEKDSMTHF 392
+V+ +++V+ LL G A R AT++N SSRSH+V T ++ S + +
Sbjct: 181 VDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQL 240
Query: 393 RFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYR 452
++ + VDLAGSER +G+ G+ KE+ IN SL LG VI +L D Q + ++PYR
Sbjct: 241 LVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDP-QRRGSNIPYR 299
Query: 453 DSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAK 497
DS++T +L+DSLGGN+KT +IA VSPS +ETL+TL +A RA+
Sbjct: 300 DSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 211 bits (537), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 131/370 (35%), Positives = 213/370 (57%), Gaps = 29/370 (7%)
Query: 163 VQVLIRIRPLSNIEKVSQ--GYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLF 220
++V R+RPL E +++ +R + + T + L W + +D + +Q+ +F
Sbjct: 7 IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHL-WKDDKAKQHMYDRVFDGNATQDDVF 65
Query: 221 RVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFS 280
+V++ + GYN C+FAYGQTGSGKT+T+ G + + G+TPR LF
Sbjct: 66 EDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGA--------DSNPGLTPRAMSELF- 115
Query: 281 RIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTN---LQLREDLKKGVYVENLT 337
RI ++ N+ FS K +E+Y + + DLL P L +++D K V VEN+T
Sbjct: 116 RIMKKDSNK----FSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVT 171
Query: 338 EYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIES-HWEKDSMTHFRFAR 396
++ T ++ ++ +G+ R T MN +SSRSH +++ IIES + + ++ +
Sbjct: 172 VVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIAR---GK 228
Query: 397 LNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRL 456
L+ VDLAGSER K SG+ G++LKEA +INKSLS LG VI +L Q H+PYR+ +L
Sbjct: 229 LSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ----HIPYRNHKL 284
Query: 457 TFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGDVTAL 516
T L+ DSLGGN+KT + N+SP+ + +ET ++L +A R + I N+ N +S +V L
Sbjct: 285 TMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNV-SSKEVARL 343
Query: 517 QRQIQQLKDK 526
++ + K++
Sbjct: 344 KKLVSYWKEQ 353
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 200 bits (508), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 140/364 (38%), Positives = 197/364 (54%), Gaps = 45/364 (12%)
Query: 162 NVQVLIRIRPL-----SNIEKVSQGYVRCLKQDTAQTLVWLGHPETR---FTFDHIACEM 213
N++V RIRP NIE + V+ D + + ++ F FD I +
Sbjct: 29 NIRVYCRIRPPLPHEDDNIEHIK---VQPFDDDNGDQGMTINRGNSQVIPFKFDKIFDQQ 85
Query: 214 ISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPR 273
+ +++F+ G ++++ L GYN C+FAYGQTGSGKTYTM LN GI P
Sbjct: 86 ETNDEIFKEVG-QLIQSSLDGYNVCIFAYGQTGSGKTYTM----------LNPGDGIVPA 134
Query: 274 IFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLE---PSSTNLQLREDLK-- 328
++FS I ++ R K SC+ F+EIYNE I DLL PS N D K
Sbjct: 135 TINHIFSWI--DKLAARGWSYKVSCE--FIEIYNENIVDLLRSGAPSQENNDRNADSKHE 190
Query: 329 -------KGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIE 381
K Y+ N+T + + + V K+L + R A+T N SSRSHS+ II
Sbjct: 191 IRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIF--IIH 248
Query: 382 SHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDS 441
+ + LNLVDLAGSER SS G+RL+E +INKSLS LG VI +L +S
Sbjct: 249 LEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHAL-NS 307
Query: 442 AQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQN 501
G+ RH+P+R+S+LT+LLQ SL G+SKT + N+SP+ NET+++L+FA + N
Sbjct: 308 PDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKV----N 363
Query: 502 NAKV 505
N K+
Sbjct: 364 NTKM 367
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 197 bits (501), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 169/293 (57%), Gaps = 27/293 (9%)
Query: 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGK 263
F+FD + + SQ +F + P++++ L GYN C+FAYGQTGSGKTYTM G
Sbjct: 116 FSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDG-------- 166
Query: 264 LNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQL 323
+ + G+ PR + LF IR R+ ++ K +FLEIYNE + DLL ++++
Sbjct: 167 VPESVGVIPRTVDLLFDSIR----GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEI 222
Query: 324 R--EDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTC-II 380
R ++ K +YV N+TE V N + L+ NR A+T N SSRSH+V +I
Sbjct: 223 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI 282
Query: 381 ESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVD 440
H EK ++ +NLVDLAGSE K+S R+ E NIN+SLS L VI++L+
Sbjct: 283 GRHAEKQEIS---VGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ 335
Query: 441 SAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFA 493
K H+PYR+S+LT LL SLGGNSKT + NVSP E++ +L+FA
Sbjct: 336 ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 384
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 169/293 (57%), Gaps = 27/293 (9%)
Query: 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGK 263
F+FD + + SQ +F + P++++ L GYN C+FAYGQTGSGKTYTM G
Sbjct: 108 FSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDG-------- 158
Query: 264 LNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQL 323
+ + G+ PR + LF IR R+ ++ K +FLEIYNE + DLL ++++
Sbjct: 159 VPESVGVIPRTVDLLFDSIR----GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEI 214
Query: 324 R--EDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTC-II 380
R ++ K +YV N+TE V N + L+ NR A+T N SSRSH+V +I
Sbjct: 215 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI 274
Query: 381 ESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVD 440
H EK ++ +NLVDLAGSE K+S R+ E NIN+SLS L VI++L+
Sbjct: 275 GRHAEKQEIS---VGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ 327
Query: 441 SAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFA 493
K H+PYR+S+LT LL SLGGNSKT + NVSP E++ +L+FA
Sbjct: 328 ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 376
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 169/293 (57%), Gaps = 27/293 (9%)
Query: 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGK 263
F+FD + + SQ +F + P++++ L GYN C+FAYGQTGSGKTYTM G
Sbjct: 102 FSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDG-------- 152
Query: 264 LNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQL 323
+ + G+ PR + LF IR R+ ++ K +FLEIYNE + DLL ++++
Sbjct: 153 VPESVGVIPRTVDLLFDSIR----GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEI 208
Query: 324 R--EDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTC-II 380
R ++ K +YV N+TE V N + L+ NR A+T N SSRSH+V +I
Sbjct: 209 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI 268
Query: 381 ESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVD 440
H EK ++ +NLVDLAGSE K+S R+ E NIN+SLS L VI++L+
Sbjct: 269 GRHAEKQEIS---VGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ 321
Query: 441 SAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFA 493
K H+PYR+S+LT LL SLGGNSKT + NVSP E++ +L+FA
Sbjct: 322 ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 370
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 169/293 (57%), Gaps = 27/293 (9%)
Query: 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGK 263
F+FD + + SQ +F + P++++ L GYN C+FAYGQ+GSGKTYTM G
Sbjct: 105 FSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTMDG-------- 155
Query: 264 LNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQL 323
+ + G+ PR + LF IR R+ ++ K +FLEIYNE + DLL ++++
Sbjct: 156 VPESVGVIPRTVDLLFDSIR----GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEI 211
Query: 324 R--EDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTC-II 380
R ++ K +YV N+TE V N + L+ NR A+T N SSRSH+V +I
Sbjct: 212 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI 271
Query: 381 ESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVD 440
H EK ++ +NLVDLAGSE K+S R+ E NIN+SLS L VI++L+
Sbjct: 272 GRHAEKQEIS---VGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ 324
Query: 441 SAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFA 493
K H+PYR+S+LT LL SLGGNSKT + NVSP E++ +L+FA
Sbjct: 325 ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 194 bits (492), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 168/293 (57%), Gaps = 27/293 (9%)
Query: 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGK 263
F+FD + + SQ +F + P++++ L GYN C+FAYGQTGSGKTYTM G
Sbjct: 105 FSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDG-------- 155
Query: 264 LNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQL 323
+ + G+ PR + LF IR R+ ++ K +FLEIYNE + DLL ++++
Sbjct: 156 VPESVGVIPRTVDLLFDSIR----GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEI 211
Query: 324 R--EDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTC-II 380
R ++ K +YV N+TE V N + L+ NR A+T N SSRSH+V +I
Sbjct: 212 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI 271
Query: 381 ESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVD 440
H EK ++ +NLVDLAGSE K+S R+ E NI +SLS L VI++L+
Sbjct: 272 GRHAEKQEIS---VGSINLVDLAGSESPKTS----TRMTETKNIKRSLSELTNVILALLQ 324
Query: 441 SAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFA 493
K H+PYR+S+LT LL SLGGNSKT + NVSP E++ +L+FA
Sbjct: 325 ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 193 bits (490), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 174/320 (54%), Gaps = 22/320 (6%)
Query: 186 LKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQT 245
LK+D + +V + F D + + SQ+ ++ +V L GYN + YGQT
Sbjct: 56 LKKDIRRGVVNNQQTDWSFKLDGVLHDA-SQDLVYETVAKDVVSQALDGYNGTIMCYGQT 114
Query: 246 GSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEI 305
G+GKTYTMMG + + GI PR + +F RM EE + + S+LEI
Sbjct: 115 GAGKTYTMMGATENYKHR-----GILPRALQQVF---RMIEERPTH---AITVRVSYLEI 163
Query: 306 YNEQITDLLE------PSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRK 359
YNE + DLL PS T + + E+ +GV+++ L+ + D LL +G NR
Sbjct: 164 YNESLFDLLSTLPYVGPSVTPMTIVEN-PQGVFIKGLSVHLTSQEEDAFSLLFEGETNRI 222
Query: 360 MAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLK 419
+A+ MN SSRSH + T +E+H S + +++NLVDLAGSER SG+EG LK
Sbjct: 223 IASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLK 282
Query: 420 EAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPS 479
EA INKSLS L I++L D K H+P+R +LT L+DSLGGN ++ N+
Sbjct: 283 EATYINKSLSFLEQAIIALGDQ---KRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGE 339
Query: 480 MCSANETLSTLKFAQRAKLI 499
ETLS+L+FA R KL+
Sbjct: 340 AAQLEETLSSLRFASRMKLV 359
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 193 bits (490), Expect = 1e-48, Method: Composition-based stats.
Identities = 129/367 (35%), Positives = 202/367 (55%), Gaps = 26/367 (7%)
Query: 163 VQVLIRIRPLSNIEKVSQG--YVRCLKQDTAQTLVWLGHPET-RFTFDHIACEMISQEKL 219
V+V +R+RP + + VR + + + W H ET ++ FD E +Q+ +
Sbjct: 23 VRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDI 82
Query: 220 FRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLF 279
+ + P++ + L G N+ + AYG TG+GKT+TM+G + G+ PR L
Sbjct: 83 YAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQP--------GVIPRALMDLL 134
Query: 280 SRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTEY 339
R EE S S+LEIY E++ DLL+P+S +L +RED + + + L++
Sbjct: 135 QLTR--EEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQK 192
Query: 340 NVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRF--ARL 397
+ + D + L + NR + AT +N SSRSH+VL ++ +++ + FR +L
Sbjct: 193 PISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVD---QRERLAPFRQREGKL 249
Query: 398 NLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLT 457
L+DLAGSE + +G +G RLKE+ IN SL LG V+ +L QG R VPYRDS+LT
Sbjct: 250 YLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDAL---NQGLPR-VPYRDSKLT 305
Query: 458 FLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNE----NASGDV 513
LLQDSLGG++ + +IAN++P +T+S L FA R+K + N NE +A G V
Sbjct: 306 RLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPV 365
Query: 514 TALQRQI 520
Q+++
Sbjct: 366 KLSQKEL 372
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 187 bits (476), Expect = 4e-47, Method: Composition-based stats.
Identities = 123/310 (39%), Positives = 178/310 (57%), Gaps = 30/310 (9%)
Query: 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEG 262
RF FD I S + +F +++ L G N C+FAYGQTGSGKT+TM N
Sbjct: 431 RFLFDKIFEREQSNDLVFEELS-QLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTN---- 485
Query: 263 KLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPS---ST 319
G+ P + +F+ I E +++ ++ + F+EIYNE I DLL P +T
Sbjct: 486 ------GMIPLSLKKIFNDI----EELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNT 535
Query: 320 NLQLR-EDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTC 378
+++ +D+ V N++ ++K+ + +L Q R AAT N SSRSHS+
Sbjct: 536 KYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFII 595
Query: 379 IIESHWEKDSMT-HFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMS 437
++ + +S+T + LNL+DLAGSER +S AEGDRLKE INKSLS LG VI S
Sbjct: 596 DLQGY---NSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHS 652
Query: 438 LVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAK 497
L + G HVPYR+S+LT+LL+ SLGGNSKT + N+SP NET+++L+FA +
Sbjct: 653 L-NLKDGS--HVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKV- 708
Query: 498 LIQNNAKVNE 507
NN ++N+
Sbjct: 709 ---NNTRINK 715
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 186 bits (473), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 128/357 (35%), Positives = 186/357 (52%), Gaps = 43/357 (12%)
Query: 162 NVQVLIRIRP--LSNIEKVSQGYVRCLKQDTAQTLVWLGHPETR-----FTFDHIACEMI 214
N++V R+RP L+ + +S + + + + E R F FD I
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSH 65
Query: 215 SQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRI 274
+ +++F +V++ L GYN C+FAYGQTGSGKTYTM LN G+ P
Sbjct: 66 TNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTM----------LNAGDGMIPMT 114
Query: 275 FEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLREDL------- 327
++F N ++ + +C ++EIYNE I DLL ++ + E L
Sbjct: 115 LSHIFK----WTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDI 170
Query: 328 -----KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIES 382
K+G Y+ N+T + + + V +L + + R AAT N SSRSHSV I
Sbjct: 171 RHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHING 230
Query: 383 ---HWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLV 439
H + S +LNLVDLAGSER SS G+RL+E NINKSLS LG VI +L
Sbjct: 231 RNLHTGETSQ-----GKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALN 285
Query: 440 DSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRA 496
GK R++P+R+S+LT+LLQ SL G+SKT + N+ P +ETL++L+FA +
Sbjct: 286 TPDAGK-RYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 186/361 (51%), Gaps = 52/361 (14%)
Query: 162 NVQVLIRIRP-LSNIEKVSQGYVRCLK---------------QDTAQTLVWLGHPETRFT 205
N++V +RIRP L N+E + + Q+TAQ F
Sbjct: 60 NIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV--------HEFK 111
Query: 206 FDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLN 265
FD I + + +F+ G +V++ L GYN +FAYGQTGSGKT+TM LN
Sbjct: 112 FDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTFTM----------LN 160
Query: 266 DDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTN----- 320
GI P ++F+ I + D + F+EIYNE I DLL + N
Sbjct: 161 PGDGIIPSTISHIFNWINKLKTKGWD----YKVNAEFIEIYNENIVDLLRSDNNNKEDTS 216
Query: 321 LQLREDLKKGVYVENLTEYNVKTVN----DVVKLLLQGAAN-RKMAATYMNSESSRSHSV 375
+ L+ +++ + T NV +V ++V+++L+ A R A+T N SSRSHS+
Sbjct: 217 IGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSI 276
Query: 376 LTCIIESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVI 435
II + LNLVDLAGSER S GDRL+E NINKSLS LG VI
Sbjct: 277 F--IIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVI 334
Query: 436 MSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQR 495
+L K RH+P+R+S+LT+LLQ SL G+SKT + N+SPS NETL++L+FA +
Sbjct: 335 HALGQPDSTK-RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 393
Query: 496 A 496
Sbjct: 394 V 394
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 184 bits (468), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 184/364 (50%), Gaps = 58/364 (15%)
Query: 162 NVQVLIRIRP-LSNIEKVSQGYVRCLK---------------QDTAQTLVWLGHPETRFT 205
N++V RIRP L N+E + + Q+TAQ F
Sbjct: 15 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV--------HEFK 66
Query: 206 FDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLN 265
FD I + + +F+ G +V++ L GYN C+FAYGQTGSGKT+TM LN
Sbjct: 67 FDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTM----------LN 115
Query: 266 DDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLRE 325
GI P ++F+ I + D + C F+EIYNE I DLL + N +E
Sbjct: 116 PGDGIIPSTISHIFNWINKLKTKGWD----YKVNCEFIEIYNENIVDLLRSDNNN---KE 168
Query: 326 DLKKGVYVENLTEYNVKTVN------------DVVKLLLQGAAN-RKMAATYMNSESSRS 372
D G+ E + KT ++V+++L+ A R A+T N SSRS
Sbjct: 169 DTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRS 228
Query: 373 HSVLTCIIESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLG 432
HS+ II + LNLVDLAGSER S GDRL+E NINKSLS LG
Sbjct: 229 HSIF--IIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLG 286
Query: 433 LVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKF 492
VI +L K RH+P+R+S+LT+LLQ SL G+SKT + N+SPS NETL++L+F
Sbjct: 287 DVIHALGQPDSTK-RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRF 345
Query: 493 AQRA 496
A +
Sbjct: 346 ASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 184 bits (467), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 184/364 (50%), Gaps = 58/364 (15%)
Query: 162 NVQVLIRIRP-LSNIEKVSQGYVRCLK---------------QDTAQTLVWLGHPETRFT 205
N++V RIRP L N+E + + Q+TAQ F
Sbjct: 3 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV--------HEFK 54
Query: 206 FDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLN 265
FD I + + +F+ G +V++ L GYN C+FAYGQTGSGKT+TM LN
Sbjct: 55 FDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTM----------LN 103
Query: 266 DDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLRE 325
GI P ++F+ I + D + C F+EIYNE I DLL + N +E
Sbjct: 104 PGDGIIPSTISHIFNWINKLKTKGWD----YKVNCEFIEIYNENIVDLLRSDNNN---KE 156
Query: 326 DLKKGVYVENLTEYNVKTVN------------DVVKLLLQGAAN-RKMAATYMNSESSRS 372
D G+ E + KT ++V+++L+ A R A+T N SSRS
Sbjct: 157 DTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRS 216
Query: 373 HSVLTCIIESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLG 432
HS+ II + LNLVDLAGSER S GDRL+E NINKSLS LG
Sbjct: 217 HSIF--IIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLG 274
Query: 433 LVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKF 492
VI +L K RH+P+R+S+LT+LLQ SL G+SKT + N+SPS NETL++L+F
Sbjct: 275 DVIHALGQPDSTK-RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRF 333
Query: 493 AQRA 496
A +
Sbjct: 334 ASKV 337
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 135/364 (37%), Positives = 183/364 (50%), Gaps = 58/364 (15%)
Query: 162 NVQVLIRIRP-LSNIEKVSQGYVRCLK---------------QDTAQTLVWLGHPETRFT 205
N++V RIRP L N+E + + Q+TAQ F
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV--------HEFK 55
Query: 206 FDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLN 265
FD I + + +F+ G +V++ L GYN C+FAYGQTGSGKT+TM LN
Sbjct: 56 FDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTM----------LN 104
Query: 266 DDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLRE 325
GI P ++F+ I + D + C F+EIYNE I DLL + N +E
Sbjct: 105 PGDGIIPSTISHIFNWINKLKTKGWD----YKVNCEFIEIYNENIVDLLRSDNNN---KE 157
Query: 326 DLKKGVYVENLTEYNVKTVN------------DVVKLLLQGAAN-RKMAATYMNSESSRS 372
D G+ E + KT ++V+++L+ A R A+T N SSRS
Sbjct: 158 DTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRS 217
Query: 373 HSVLTCIIESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLG 432
HS+ II + LNLVDLAGS R S GDRL+E NINKSLS LG
Sbjct: 218 HSIF--IIHLSGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLG 275
Query: 433 LVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKF 492
VI +L K RH+P+R+S+LT+LLQ SL G+SKT + N+SPS NETL++L+F
Sbjct: 276 DVIHALGQPDSTK-RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRF 334
Query: 493 AQRA 496
A +
Sbjct: 335 ASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 135/364 (37%), Positives = 183/364 (50%), Gaps = 58/364 (15%)
Query: 162 NVQVLIRIRP-LSNIEKVSQGYVRCLK---------------QDTAQTLVWLGHPETRFT 205
N++V RIRP L N+E + + Q+TAQ F
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV--------HEFK 55
Query: 206 FDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLN 265
FD I + + +F+ G +V++ L GYN C+FAYGQTGSGKT+TM LN
Sbjct: 56 FDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTM----------LN 104
Query: 266 DDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLRE 325
GI P ++F+ I + D + C F+EIYNE I DLL + N +E
Sbjct: 105 PGDGIIPSTISHIFNWINKLKTKGWD----YKVNCEFIEIYNENIVDLLRSDNNN---KE 157
Query: 326 DLKKGVYVENLTEYNVKTVN------------DVVKLLLQGAAN-RKMAATYMNSESSRS 372
D G+ E + KT ++V+++L+ A R A+T N SSRS
Sbjct: 158 DTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRS 217
Query: 373 HSVLTCIIESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLG 432
HS+ II + LNLVDLAGSER S GDRL+E NI KSLS LG
Sbjct: 218 HSIF--IIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLG 275
Query: 433 LVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKF 492
VI +L K RH+P+R+S+LT+LLQ SL G+SKT + N+SPS NETL++L+F
Sbjct: 276 DVIHALGQPDSTK-RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRF 334
Query: 493 AQRA 496
A +
Sbjct: 335 ASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 135/364 (37%), Positives = 183/364 (50%), Gaps = 58/364 (15%)
Query: 162 NVQVLIRIRP-LSNIEKVSQGYVRCLK---------------QDTAQTLVWLGHPETRFT 205
N++V RIRP L N+E + + Q+TAQ F
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV--------HEFK 55
Query: 206 FDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLN 265
FD I + + +F+ G +V++ L GYN C+FAYGQTGSGKT+TM LN
Sbjct: 56 FDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTM----------LN 104
Query: 266 DDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLRE 325
GI P ++F+ I + D + C F+EIYNE I DLL + N +E
Sbjct: 105 PGDGIIPSTISHIFNWINKLKTKGWD----YKVNCEFIEIYNENIVDLLRSDNNN---KE 157
Query: 326 DLKKGVYVENLTEYNVKTVN------------DVVKLLLQGAAN-RKMAATYMNSESSRS 372
D G+ E + KT ++V+++L+ A R A+T N SS S
Sbjct: 158 DTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSAS 217
Query: 373 HSVLTCIIESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLG 432
HS+ II + LNLVDLAGSER S GDRL+E NINKSLS LG
Sbjct: 218 HSIF--IIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLG 275
Query: 433 LVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKF 492
VI +L K RH+P+R+S+LT+LLQ SL G+SKT + N+SPS NETL++L+F
Sbjct: 276 DVIHALGQPDSTK-RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRF 334
Query: 493 AQRA 496
A +
Sbjct: 335 ASKV 338
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 174 bits (440), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 164/295 (55%), Gaps = 25/295 (8%)
Query: 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM-MGEINEVEG 262
F FDH ISQ+++++ LP+V+ L G+ AYGQTG+GK+Y+M M E+
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEI-- 120
Query: 263 KLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQ 322
L + GI PR +F R+ +EN +D SF+EIYNE+ DLL S+ ++
Sbjct: 121 -LPEHLGILPRALGDIFERVTARQENNKD---AIQVYASFIEIYNEKPFDLLG-STPHMP 175
Query: 323 LREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIES 382
+ + T + + D+ +L G NR++ T MNS SSRSH+++T ++S
Sbjct: 176 M-----VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKS 230
Query: 383 HWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSA 442
TH +R+N+VDLAGSE + +G EG +E NIN L ++ V+MS+ A
Sbjct: 231 K------THH--SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM---A 279
Query: 443 QGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAK 497
G H +PYRDS LT +LQ SL S T +A +SP C +ETLSTL+F AK
Sbjct: 280 AG-HTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 174 bits (440), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 164/295 (55%), Gaps = 25/295 (8%)
Query: 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM-MGEINEVEG 262
F FDH ISQ+++++ LP+V+ L G+ AYGQTG+GK+Y+M M E+
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEI-- 120
Query: 263 KLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQ 322
L + GI PR +F R+ +EN +D SF+EIYNE+ DLL S+ ++
Sbjct: 121 -LPEHLGILPRALGDIFERVTARQENNKD---AIQVYASFIEIYNEKPFDLLG-STPHMP 175
Query: 323 LREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIES 382
+ + T + + D+ +L G NR++ T MNS SSRSH+++T ++S
Sbjct: 176 M-----VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKS 230
Query: 383 HWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSA 442
TH +R+N+VDLAGSE + +G EG +E NIN L ++ V+MS+ A
Sbjct: 231 K------THH--SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM---A 279
Query: 443 QGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAK 497
G H +PYRDS LT +LQ SL S T +A +SP C +ETLSTL+F AK
Sbjct: 280 AG-HTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 171 bits (433), Expect = 4e-42, Method: Composition-based stats.
Identities = 123/309 (39%), Positives = 170/309 (55%), Gaps = 30/309 (9%)
Query: 200 PETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINE 259
P F+FD + Q+++F + +V++ L GY C+FAYGQTGSGKT+TM G
Sbjct: 81 PRHDFSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEG---- 135
Query: 260 VEGKLNDDC--GITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPS 317
G D G+ PR +LFS + + +S S++EIYNE + DLL
Sbjct: 136 --GPGGDPQLEGLIPRALRHLFS----VAQELSGQGWTYSFVASYVEIYNETVRDLLATG 189
Query: 318 STNLQLRE-DLKK-GVYVENLTEYNVKTV-----NDVVKLLLQGAANRKMAATYMNSESS 370
+ Q E ++++ G E LT N + V +V LL NR +A T N SS
Sbjct: 190 TRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSS 249
Query: 371 RSHSVLTCIIESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEG----DRLKEAANINK 426
RSHSV I E S A L+LVDLAGSER A G +RL+E IN
Sbjct: 250 RSHSVFQLQISG--EHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINS 307
Query: 427 SLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANET 486
SLSTLGLVIM+L + K HVPYR+S+LT+LLQ+SLGG++K + N+SP + +E+
Sbjct: 308 SLSTLGLVIMALSN----KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSES 363
Query: 487 LSTLKFAQR 495
L++L+FA +
Sbjct: 364 LNSLRFASK 372
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/359 (33%), Positives = 191/359 (53%), Gaps = 35/359 (9%)
Query: 152 VDDPLFWKDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETR-------- 203
V DP+ ++H + V +R RPL N +++++ + + + + L+ + P+ +
Sbjct: 64 VTDPI--EEHRICVCVRKRPL-NKQELAKKEIDVISVPS-KCLLLVHEPKLKVDLTKYLE 119
Query: 204 ---FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEV 260
F FD E S E ++R P+V+ G + FAYGQTGSGKT+TM G+++
Sbjct: 120 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLS-- 177
Query: 261 EGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTN 320
GK + + I+ + + + R L +F EIYN ++ DLL +
Sbjct: 178 -GKSQN---ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA-K 232
Query: 321 LQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCII 380
L++ ED ++ V V L EY V +DV+K++ G+A R T+ NS SSRSH+ ++
Sbjct: 233 LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL 292
Query: 381 ESHWEKDSMTHFRFARLNLVDLAGSERQK-SSGAEGDRLKEAANINKSLSTLGLVIMSLV 439
+ H +F+ LVDLAG+ER +S A+ E A INKSL L I +L
Sbjct: 293 RTKGR----LHGKFS---LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL- 344
Query: 440 DSAQGKHRHVPYRDSRLTFLLQDS-LGGNSKTTIIANVSPSMCSANETLSTLKFAQRAK 497
Q K H P+R+S+LT +L+DS +G NS+T +IA +SP + S TL+TL++A R K
Sbjct: 345 --GQNKA-HTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 204/388 (52%), Gaps = 43/388 (11%)
Query: 131 ISRGISVVNHEVSVDVEHFE--------LVDDPLFWKDHNVQVLIRIRPLSNIEKVSQGY 182
+ RG S N E + ++ F + DP+ ++H + V +R RPL N +++++
Sbjct: 15 VPRGSSFPNWEFARMIKEFRATLECHPLTMTDPI--EEHRICVCVRKRPL-NKQELAKKE 71
Query: 183 VRCLKQDTAQTLVWLGHPETR-----------FTFDHIACEMISQEKLFRVAGLPMVENC 231
+ + + + L+ + P+ + F FD E S E ++R P+V+
Sbjct: 72 IDVISIPS-KCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTI 130
Query: 232 LSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRD 291
G + FAYGQTGSGKT+TM G+++ GK + + I+ + + +
Sbjct: 131 FEGGKATCFAYGQTGSGKTHTMGGDLS---GKAQN---ASKGIYAMASRDVFLLKNQPCY 184
Query: 292 ERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLL 351
+L +F EIYN ++ DLL + L++ ED K+ V V L E+ V + +DV+K++
Sbjct: 185 RKLGLEVYVTFFEIYNGKLFDLLNKKA-KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMI 243
Query: 352 LQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLNLVDLAGSERQK-S 410
G+A R T+ NS SSRSH+ I+ + K M H +F+ LVDLAG+ER +
Sbjct: 244 DMGSACRTSGQTFANSNSSRSHACFQIILRA---KGRM-HGKFS---LVDLAGNERGADT 296
Query: 411 SGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDS-LGGNSK 469
S A+ E A INKSL L I +L Q K H P+R+S+LT +L+DS +G NS+
Sbjct: 297 SSADRQTRMEGAEINKSLLALKECIRAL---GQNKA-HTPFRESKLTQVLRDSFIGENSR 352
Query: 470 TTIIANVSPSMCSANETLSTLKFAQRAK 497
T +IA +SP + S TL+TL++A R K
Sbjct: 353 TCMIATISPGISSCEYTLNTLRYADRVK 380
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 157 bits (397), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 133/382 (34%), Positives = 200/382 (52%), Gaps = 47/382 (12%)
Query: 139 NHEVSVDVEHFELVDD--PLFWKD----HNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQ 192
N+E+ + F D PL D H + V +R RPL+ +K +Q + ++
Sbjct: 61 NYEIMCMIRDFRGSLDYRPLTTADPIDEHRICVCVRKRPLN--KKETQMKDLDVITIPSK 118
Query: 193 TLVWLGHPETR-----------FTFDHIACEMISQEKLFRVAGLPMVENCL-SGYNSCMF 240
+V + P+ + F FD+ + E ++R P+VE G +C F
Sbjct: 119 DVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATC-F 177
Query: 241 AYGQTGSGKTYTMMGEINEVEGKLNDDC--GITPRIFEYLFSRIRMEEENRRDERLKFSC 298
AYGQTGSGKT+TM G+ + GK N DC GI +F + +++ N + +L+
Sbjct: 178 AYGQTGSGKTHTMGGDFS---GK-NQDCSKGIYALAARDVF--LMLKKPNYK--KLELQV 229
Query: 299 KCSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANR 358
+F EIY+ ++ DLL T L++ ED K+ V V L E VK V DV+KL+ G + R
Sbjct: 230 YATFFEIYSGKVFDLLN-RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCR 288
Query: 359 KMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLNLVDLAGSERQK-SSGAEGDR 417
T N+ SSRSH+V I+ + H +F+ L+DLAG+ER +S A+
Sbjct: 289 TSGQTSANAHSSRSHAVFQIIL----RRKGKLHGKFS---LIDLAGNERGADTSSADRQT 341
Query: 418 LKEAANINKSLSTLGLVIMSLVDSAQGKHR-HVPYRDSRLTFLLQDS-LGGNSKTTIIAN 475
E A INKSL L I +L G+++ H P+R S+LT +L+DS +G NS+T +IA
Sbjct: 342 RLEGAEINKSLLALKECIRAL-----GRNKPHTPFRASKLTQVLRDSFIGENSRTCMIAT 396
Query: 476 VSPSMCSANETLSTLKFAQRAK 497
+SP M S TL+TL++A R K
Sbjct: 397 ISPGMASCENTLNTLRYANRVK 418
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 161/296 (54%), Gaps = 20/296 (6%)
Query: 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGK 263
F FD E S E ++R P+V+ G + FAYGQTGSGKT+TM G+++ GK
Sbjct: 51 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLS---GK 107
Query: 264 LNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQL 323
+ + I+ + + + R L +F EIYN ++ DLL + L++
Sbjct: 108 SQN---ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA-KLRV 163
Query: 324 REDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESH 383
ED ++ V V L EY V +DV+K++ G+A R T+ NS SSRSH+ ++ +
Sbjct: 164 LEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK 223
Query: 384 WEKDSMTHFRFARLNLVDLAGSERQK-SSGAEGDRLKEAANINKSLSTLGLVIMSLVDSA 442
H +F+ LVDLAG+ER +S A+ E A INKSL L I +L
Sbjct: 224 GR----LHGKFS---LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL---G 273
Query: 443 QGKHRHVPYRDSRLTFLLQDS-LGGNSKTTIIANVSPSMCSANETLSTLKFAQRAK 497
Q K H P+R+S+LT +L+DS +G NS+T +IA +SP + S TL+TL++A R K
Sbjct: 274 QNKA-HTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 328
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 135/249 (54%), Gaps = 21/249 (8%)
Query: 162 NVQVLIRIRPLSNIEKV-SQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLF 220
+++V+ R RPL+ E + ++ K + ++ G P + FD + +QE+++
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEET-VVIGQGKP---YVFDRVLPPNTTQEQVY 62
Query: 221 RVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDD--CGITPRIFEYL 278
+V++ L GYN +FAYGQT SGKT+TM EGKL+D GI PRI +
Sbjct: 63 NACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTM-------EGKLHDPQLMGIIPRIAHDI 115
Query: 279 FSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTE 338
F I DE L+F K S+ EIY ++I DLL+ S TNL + ED + YV+ TE
Sbjct: 116 FDHIY-----SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTE 170
Query: 339 YNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLN 398
V + +V+ ++ +G ANR +A T MN SSRSHS+ +I E +L
Sbjct: 171 RFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIF--LINIKQENVETEKKLSGKLY 228
Query: 399 LVDLAGSER 407
LVDLAGSE+
Sbjct: 229 LVDLAGSEK 237
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 129 bits (324), Expect = 2e-29, Method: Composition-based stats.
Identities = 114/354 (32%), Positives = 178/354 (50%), Gaps = 45/354 (12%)
Query: 163 VQVLIRIRPLSNIEKVSQGYVRCLKQD----TAQTLVWLGHPETRFTFD---HIACEMIS 215
++V++R RPLS +EK K+D T + L E R+ D +I
Sbjct: 2 IKVVVRKRPLSELEKK--------KKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFI 53
Query: 216 QEKLF--RVAGLPMVENCLSGY------NSCM---FAYGQTGSGKTYTMMGEINEVEGKL 264
+K+F V + EN + N C+ FAYGQTGSGKTYTM+G ++ G+
Sbjct: 54 VDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLG--SQPYGQS 111
Query: 265 NDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLR 324
+ TP IF+Y I N D+ SF EIY ++ DLL+ L
Sbjct: 112 D-----TPGIFQYAAGDI-FTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAAL- 164
Query: 325 EDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHW 384
E+ KK V V++L V T +++ ++ G RK+ N ESSRSH++L +
Sbjct: 165 ENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDL---- 220
Query: 385 EKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLK-EAANINKSLSTLGLVIMSLVDSAQ 443
KD + ++ +DLAGSER + ++ + + + ANIN+SL L + + +
Sbjct: 221 -KDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSL----LALKECIRAMD 275
Query: 444 GKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAK 497
H+P+RDS LT +L+D G SK+ +IAN+SP++ +TL+TL+++ R K
Sbjct: 276 SDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 60/86 (69%), Gaps = 3/86 (3%)
Query: 421 AANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSM 480
A NINKSLS LG VI +L A+G HVPYRDS++T +LQDSL GN +TTI+ SPS+
Sbjct: 1 AKNINKSLSALGNVISAL---AEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSV 57
Query: 481 CSANETLSTLKFAQRAKLIQNNAKVN 506
+ ET STL F QRAK I+N VN
Sbjct: 58 FNEAETKSTLMFGQRAKTIKNTVSVN 83
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 58/82 (70%), Gaps = 3/82 (3%)
Query: 425 NKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSAN 484
NKSLS LG VI +L A+G HVPYRDS++T +LQDSLGGN +TTI+ SPS+ +
Sbjct: 1 NKSLSALGNVISAL---AEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEA 57
Query: 485 ETLSTLKFAQRAKLIQNNAKVN 506
ET STL F QRAK I+N VN
Sbjct: 58 ETKSTLMFGQRAKTIKNTVSVN 79
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 31.6 bits (70), Expect = 4.8, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 578 KTKRLECMLLGSLRREKMAEAVTQKLEAEIEHMNRLLCQREEDTQHTKMMLRFREEKIKQ 637
K++R +LL L EK+ +A Q+ +E + + LL R+++ Q L E K +
Sbjct: 195 KSQRARALLLAEL--EKIIKARQQQPPSEEDALGILLAARDDNNQP----LSLPELKDQI 248
Query: 638 LELLVNGSVTAEK------YLMDENIALKEEIQLLQARIDRNPELTRFALENIRLLEQL 690
L LL G T L+ ++ ++E ++ Q ++ + ELT L+ + L+Q+
Sbjct: 249 LLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKLQLSQELTAETLKKMPYLDQV 307
>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Furiosus
Length = 534
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%)
Query: 1481 HIGAFMHKILNSSIESGFHPLRQQENYIFRNLSPRFLLNSQDDILITEKGAEDGDHNEWG 1540
HIG M ++N +I + F P+++ + N + +S + I E + +
Sbjct: 32 HIGDCMKALINGTIYTSFSPVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGK 91
Query: 1541 TNMEEFFLSHSHLSYENLSL 1560
M FF SH HL +SL
Sbjct: 92 FVMPAFFDSHLHLDELGMSL 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,891,694
Number of Sequences: 62578
Number of extensions: 1981062
Number of successful extensions: 5965
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 5547
Number of HSP's gapped (non-prelim): 177
length of query: 2159
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2045
effective length of database: 7,839,445
effective search space: 16031665025
effective search space used: 16031665025
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)