Query 000113
Match_columns 2159
No_of_seqs 422 out of 1894
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 18:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03188 kinesin-12 family pro 100.0 5E-105 1E-109 1005.8 65.3 559 159-724 96-1010(1320)
2 KOG0243 Kinesin-like protein [ 100.0 3.3E-94 7.2E-99 902.9 69.0 503 159-681 47-566 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 1.1E-93 2.3E-98 871.1 29.3 359 158-532 2-370 (574)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 9.6E-91 2.1E-95 826.5 45.1 510 159-719 5-547 (607)
5 KOG0245 Kinesin-like protein [ 100.0 4.2E-91 9.1E-96 858.4 31.9 356 160-527 3-377 (1221)
6 cd01373 KISc_KLP2_like Kinesin 100.0 1.2E-84 2.6E-89 764.4 37.7 337 161-499 1-337 (337)
7 KOG0241 Kinesin-like protein [ 100.0 9.6E-82 2.1E-86 759.0 35.7 356 160-528 3-381 (1714)
8 KOG0242 Kinesin-like protein [ 100.0 1.1E-82 2.4E-87 797.3 28.7 354 160-533 5-367 (675)
9 cd01370 KISc_KIP3_like Kinesin 100.0 1.6E-80 3.4E-85 729.9 35.2 323 162-499 1-338 (338)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.7E-78 3.6E-83 714.7 36.0 316 162-497 2-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 7.6E-78 1.6E-82 710.9 37.2 332 161-506 1-356 (356)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 3.5E-77 7.5E-82 703.7 37.8 336 161-508 2-352 (352)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 1.5E-75 3.3E-80 686.0 36.6 324 161-499 1-333 (333)
14 cd01367 KISc_KIF2_like Kinesin 100.0 8.9E-76 1.9E-80 685.5 34.3 311 161-497 1-322 (322)
15 cd01372 KISc_KIF4 Kinesin moto 100.0 4.5E-75 9.7E-80 682.4 36.3 329 162-500 2-341 (341)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 5.7E-75 1.2E-79 678.1 36.9 323 161-499 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 4.5E-75 9.8E-80 678.5 34.5 310 162-497 1-319 (319)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 6.1E-75 1.3E-79 677.2 34.7 319 162-499 1-321 (321)
19 cd01375 KISc_KIF9_like Kinesin 100.0 6E-74 1.3E-78 673.0 34.8 315 162-497 1-334 (334)
20 KOG0239 Kinesin (KAR3 subfamil 100.0 4.8E-74 1E-78 717.8 27.1 346 159-524 312-665 (670)
21 cd01366 KISc_C_terminal Kinesi 100.0 3.2E-72 7E-77 655.5 37.1 322 160-502 1-329 (329)
22 smart00129 KISc Kinesin motor, 100.0 8.3E-71 1.8E-75 644.1 37.1 329 162-506 1-335 (335)
23 KOG0247 Kinesin-like protein [ 100.0 1.5E-69 3.2E-74 656.9 44.9 345 152-508 22-445 (809)
24 cd00106 KISc Kinesin motor dom 100.0 1.1E-69 2.3E-74 632.1 36.9 320 162-497 1-328 (328)
25 PF00225 Kinesin: Kinesin moto 100.0 5.8E-70 1.3E-74 636.0 27.9 320 168-499 1-335 (335)
26 KOG0246 Kinesin-like protein [ 100.0 9.3E-68 2E-72 627.4 34.1 327 159-502 206-544 (676)
27 KOG0244 Kinesin-like protein [ 100.0 3.5E-67 7.7E-72 651.6 39.2 347 169-531 1-350 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1E-63 2.2E-68 620.5 30.7 342 160-526 21-365 (568)
29 cd01363 Motor_domain Myosin an 100.0 3.5E-50 7.5E-55 437.4 20.0 178 219-478 8-186 (186)
30 PF12711 Kinesin-relat_1: Kine 99.8 5E-19 1.1E-23 173.1 10.1 86 631-716 1-86 (86)
31 PF06548 Kinesin-related: Kine 99.8 1.4E-17 3.1E-22 197.6 18.6 187 580-766 101-308 (488)
32 KOG0161 Myosin class II heavy 99.1 0.00044 9.6E-09 97.2 94.2 287 1594-1922 1577-1895(1930)
33 KOG4674 Uncharacterized conser 99.0 0.0012 2.7E-08 91.7 90.0 634 1337-2069 568-1258(1822)
34 PRK02224 chromosome segregatio 98.8 0.00011 2.4E-09 98.1 49.9 49 1869-1922 478-526 (880)
35 KOG4674 Uncharacterized conser 98.8 0.0052 1.1E-07 86.0 108.1 392 1656-2131 997-1426(1822)
36 PRK03918 chromosome segregatio 98.7 0.0018 4E-08 86.6 55.7 96 1793-1894 388-487 (880)
37 TIGR02168 SMC_prok_B chromosom 98.7 0.0004 8.8E-09 94.1 49.9 56 1972-2027 677-732 (1179)
38 PRK02224 chromosome segregatio 98.7 0.00061 1.3E-08 91.3 49.0 68 2054-2122 572-639 (880)
39 TIGR02168 SMC_prok_B chromosom 98.5 0.0088 1.9E-07 81.5 51.4 57 2073-2129 794-850 (1179)
40 PF10174 Cast: RIM-binding pro 98.5 0.006 1.3E-07 80.9 47.7 455 1594-2105 4-537 (775)
41 PRK03918 chromosome segregatio 98.4 0.0085 1.8E-07 80.4 49.0 31 1869-1899 455-485 (880)
42 TIGR02169 SMC_prok_A chromosom 98.4 0.0095 2.1E-07 81.5 50.1 31 1972-2002 674-704 (1164)
43 TIGR00606 rad50 rad50. This fa 98.4 0.05 1.1E-06 76.7 66.4 491 1558-2095 497-1041(1311)
44 COG5059 KIP1 Kinesin-like prot 98.3 6.3E-09 1.4E-13 132.3 -10.9 257 155-438 299-565 (568)
45 TIGR02169 SMC_prok_A chromosom 98.2 0.072 1.6E-06 73.2 49.9 46 1707-1752 296-341 (1164)
46 COG1196 Smc Chromosome segrega 98.2 0.12 2.5E-06 72.5 52.1 52 1580-1631 159-210 (1163)
47 PF10174 Cast: RIM-binding pro 98.1 0.077 1.7E-06 71.0 46.1 185 1615-1809 4-203 (775)
48 PF07888 CALCOCO1: Calcium bin 97.9 0.013 2.8E-07 74.9 33.6 70 1860-1933 411-480 (546)
49 PRK01156 chromosome segregatio 97.8 0.46 1E-05 64.8 51.4 29 1782-1810 363-391 (895)
50 KOG0161 Myosin class II heavy 97.6 1.2 2.5E-05 64.9 99.0 248 1590-1883 1657-1909(1930)
51 PF09726 Macoilin: Transmembra 97.5 0.0068 1.5E-07 80.0 23.0 204 1651-1900 441-656 (697)
52 PF07888 CALCOCO1: Calcium bin 97.4 0.28 6E-06 63.4 34.3 263 1624-1994 167-432 (546)
53 PF05701 WEMBL: Weak chloropla 97.4 0.89 1.9E-05 59.1 43.0 303 1591-1926 121-439 (522)
54 TIGR00606 rad50 rad50. This fa 97.4 1.9 4.1E-05 61.7 76.4 55 1037-1091 294-348 (1311)
55 KOG0976 Rho/Rac1-interacting s 97.2 1.8 3.8E-05 57.3 36.4 398 1589-2075 137-597 (1265)
56 PRK04778 septation ring format 97.1 0.57 1.2E-05 61.3 33.1 334 1577-1987 127-491 (569)
57 KOG0996 Structural maintenance 97.1 0.18 4E-06 68.4 27.9 267 1592-1902 777-1048(1293)
58 PF00038 Filament: Intermediat 97.0 0.72 1.6E-05 55.4 30.6 93 1718-1834 60-152 (312)
59 PF00038 Filament: Intermediat 97.0 0.39 8.4E-06 57.6 27.4 163 1640-1832 59-238 (312)
60 PF00261 Tropomyosin: Tropomyo 96.9 0.12 2.7E-06 60.4 21.8 225 1653-1923 5-229 (237)
61 KOG0976 Rho/Rac1-interacting s 96.8 3.4 7.4E-05 54.9 40.5 201 1604-1829 96-307 (1265)
62 PF12128 DUF3584: Protein of u 96.6 7.6 0.00016 55.4 48.2 114 2015-2131 582-699 (1201)
63 PRK04863 mukB cell division pr 96.6 8.4 0.00018 55.9 41.4 59 2073-2132 594-667 (1486)
64 KOG4643 Uncharacterized coiled 96.5 6.4 0.00014 53.9 38.0 67 2056-2122 490-556 (1195)
65 PRK04863 mukB cell division pr 96.4 10 0.00022 55.1 40.2 62 2054-2115 610-671 (1486)
66 PF12128 DUF3584: Protein of u 96.4 9.5 0.00021 54.5 49.3 102 1724-1833 433-534 (1201)
67 COG1196 Smc Chromosome segrega 96.3 9.8 0.00021 54.2 70.7 81 1030-1110 144-227 (1163)
68 KOG4673 Transcription factor T 96.1 7.8 0.00017 51.2 41.1 427 1625-2108 443-955 (961)
69 KOG0996 Structural maintenance 95.9 14 0.0003 51.8 33.8 302 1591-1922 265-570 (1293)
70 PF05557 MAD: Mitotic checkpoi 95.8 0.0039 8.3E-08 82.6 2.1 41 2094-2134 501-543 (722)
71 PHA02562 46 endonuclease subun 95.8 1.6 3.5E-05 56.3 25.2 28 1991-2018 495-523 (562)
72 PRK11637 AmiB activator; Provi 95.8 5.2 0.00011 50.7 29.0 86 1646-1752 37-122 (428)
73 PF05557 MAD: Mitotic checkpoi 95.8 0.011 2.3E-07 78.6 5.9 63 1950-2024 587-651 (722)
74 KOG0612 Rho-associated, coiled 95.6 17 0.00037 51.1 39.9 142 1640-1810 506-651 (1317)
75 PF05667 DUF812: Protein of un 95.6 1.1 2.4E-05 59.0 22.7 201 1559-1776 332-553 (594)
76 PF15254 CCDC14: Coiled-coil d 95.6 1.2 2.7E-05 59.0 22.5 223 677-1020 333-558 (861)
77 PHA02562 46 endonuclease subun 95.4 2.2 4.7E-05 55.1 24.2 94 1781-1899 298-391 (562)
78 PF00261 Tropomyosin: Tropomyo 94.9 3.6 7.7E-05 48.5 21.9 43 1784-1826 185-227 (237)
79 PF09726 Macoilin: Transmembra 94.8 1.9 4.2E-05 57.9 21.5 96 1871-2005 550-655 (697)
80 PRK11637 AmiB activator; Provi 94.7 8.6 0.00019 48.9 26.1 92 1589-1687 43-134 (428)
81 PF01576 Myosin_tail_1: Myosin 94.7 0.0089 1.9E-07 80.7 0.0 212 1781-2028 334-569 (859)
82 COG1340 Uncharacterized archae 94.4 14 0.0003 45.4 25.4 194 1706-1927 35-229 (294)
83 PRK01156 chromosome segregatio 94.2 34 0.00075 47.3 49.9 42 1858-1899 468-509 (895)
84 PRK14086 dnaA chromosomal repl 94.0 0.41 8.8E-06 63.0 12.7 51 202-255 283-333 (617)
85 PF05622 HOOK: HOOK protein; 93.7 0.018 4E-07 76.4 0.0 191 1646-1901 236-426 (713)
86 PRK04778 septation ring format 93.7 34 0.00073 45.4 38.0 157 1545-1748 246-412 (569)
87 KOG0933 Structural maintenance 93.6 4.2 9.1E-05 55.5 20.6 212 1589-1837 790-1007(1174)
88 PF05701 WEMBL: Weak chloropla 93.6 33 0.00072 45.2 35.4 211 1558-1789 214-442 (522)
89 PF09730 BicD: Microtubule-ass 93.6 40 0.00087 46.0 36.9 141 1567-1760 8-155 (717)
90 KOG0250 DNA repair protein RAD 93.4 38 0.00081 47.6 28.9 29 1883-1911 464-492 (1074)
91 PF05010 TACC: Transforming ac 93.2 10 0.00022 44.6 20.6 181 1634-1830 8-188 (207)
92 KOG0977 Nuclear envelope prote 93.1 23 0.0005 46.8 25.5 231 1642-1899 113-361 (546)
93 KOG4643 Uncharacterized coiled 93.0 54 0.0012 45.7 34.7 280 1707-2092 417-708 (1195)
94 PF01576 Myosin_tail_1: Myosin 92.8 0.013 2.9E-07 79.2 -3.5 289 1599-1926 524-841 (859)
95 COG0419 SbcC ATPase involved i 92.6 60 0.0013 45.4 53.7 32 1995-2027 595-626 (908)
96 KOG0612 Rho-associated, coiled 92.6 52 0.0011 46.7 28.4 127 1559-1692 512-645 (1317)
97 KOG0994 Extracellular matrix g 92.1 72 0.0016 45.1 28.5 119 1756-1902 1635-1753(1758)
98 PF00308 Bac_DnaA: Bacterial d 92.0 0.087 1.9E-06 60.8 2.3 50 203-255 4-53 (219)
99 PRK06893 DNA replication initi 91.7 0.13 2.8E-06 59.5 3.2 47 203-255 12-58 (229)
100 PF14662 CCDC155: Coiled-coil 91.5 14 0.0003 43.0 18.6 173 1614-1808 8-191 (193)
101 PF15619 Lebercilin: Ciliary p 91.5 11 0.00023 43.9 18.1 118 648-765 55-190 (194)
102 KOG0250 DNA repair protein RAD 91.3 86 0.0019 44.3 30.4 34 1801-1834 399-432 (1074)
103 PF05667 DUF812: Protein of un 91.1 25 0.00054 47.1 23.0 146 1789-2013 394-539 (594)
104 TIGR03185 DNA_S_dndD DNA sulfu 90.9 15 0.00033 49.2 21.2 127 1858-1997 208-334 (650)
105 KOG0977 Nuclear envelope prote 90.4 76 0.0016 42.3 27.0 40 1715-1754 95-134 (546)
106 PF09730 BicD: Microtubule-ass 90.4 88 0.0019 43.0 42.7 51 1047-1097 404-454 (717)
107 KOG0971 Microtubule-associated 89.8 56 0.0012 45.1 23.9 101 1565-1675 246-358 (1243)
108 PF06160 EzrA: Septation ring 89.7 86 0.0019 41.8 28.7 166 1568-1750 114-295 (560)
109 COG2433 Uncharacterized conser 89.6 4.7 0.0001 52.9 14.2 93 1782-1899 415-507 (652)
110 PF05911 DUF869: Plant protein 89.6 47 0.001 45.8 24.0 121 1717-1837 587-714 (769)
111 COG0419 SbcC ATPase involved i 89.1 1.2E+02 0.0026 42.7 49.4 38 1862-1899 532-571 (908)
112 COG2805 PilT Tfp pilus assembl 89.1 0.19 4.1E-06 61.0 1.7 30 226-255 115-144 (353)
113 KOG0018 Structural maintenance 88.8 54 0.0012 46.1 23.4 261 1594-1927 242-503 (1141)
114 PRK06526 transposase; Provisio 88.7 0.21 4.5E-06 59.2 1.7 46 206-256 73-118 (254)
115 PRK06620 hypothetical protein; 88.3 0.26 5.7E-06 56.8 2.1 50 202-255 11-63 (214)
116 PRK09039 hypothetical protein; 88.1 14 0.0003 46.2 16.6 142 1666-1829 42-184 (343)
117 PRK05642 DNA replication initi 88.0 0.33 7.2E-06 56.5 2.8 47 202-255 14-64 (234)
118 PF08317 Spc7: Spc7 kinetochor 87.9 63 0.0014 40.2 21.9 56 1782-1837 209-264 (325)
119 KOG1029 Endocytic adaptor prot 87.7 82 0.0018 43.0 23.2 133 1969-2101 406-552 (1118)
120 KOG0964 Structural maintenance 87.2 94 0.002 43.5 23.8 43 1778-1820 428-475 (1200)
121 PF05483 SCP-1: Synaptonemal c 86.7 1.4E+02 0.003 40.7 47.1 387 1593-2111 85-507 (786)
122 COG1579 Zn-ribbon protein, pos 86.7 38 0.00082 40.8 18.3 46 1706-1751 90-135 (239)
123 KOG0964 Structural maintenance 86.4 1.3E+02 0.0027 42.4 24.3 121 1625-1746 643-768 (1200)
124 PF09738 DUF2051: Double stran 86.3 55 0.0012 40.7 19.9 135 576-719 83-245 (302)
125 COG1579 Zn-ribbon protein, pos 86.3 29 0.00063 41.7 17.1 140 1655-1825 30-171 (239)
126 PF05483 SCP-1: Synaptonemal c 86.3 1.4E+02 0.0031 40.5 61.3 153 1714-1898 456-612 (786)
127 COG4942 Membrane-bound metallo 86.2 1.2E+02 0.0026 39.4 24.1 90 1600-1689 38-127 (420)
128 PLN02939 transferase, transfer 86.0 89 0.0019 44.2 23.5 64 1646-1751 118-181 (977)
129 KOG0933 Structural maintenance 86.0 1.8E+02 0.0039 41.2 38.6 480 1551-2130 297-870 (1174)
130 PF04851 ResIII: Type III rest 85.9 0.38 8.3E-06 51.5 1.6 21 235-255 24-44 (184)
131 PF09787 Golgin_A5: Golgin sub 85.8 1.3E+02 0.0029 39.6 27.4 257 1551-1837 105-382 (511)
132 COG4942 Membrane-bound metallo 85.5 53 0.0012 42.3 19.7 42 1589-1630 69-110 (420)
133 TIGR02928 orc1/cdc6 family rep 85.3 0.58 1.3E-05 56.8 2.9 49 204-253 8-57 (365)
134 PRK08084 DNA replication initi 85.3 0.49 1.1E-05 55.1 2.2 48 202-255 17-64 (235)
135 PRK14088 dnaA chromosomal repl 85.1 0.53 1.2E-05 59.8 2.6 50 202-255 100-149 (440)
136 PRK00411 cdc6 cell division co 85.1 0.62 1.3E-05 57.3 3.1 49 204-253 23-72 (394)
137 PRK09087 hypothetical protein; 84.8 0.62 1.4E-05 54.2 2.8 47 203-255 17-63 (226)
138 COG2804 PulE Type II secretory 84.0 0.44 9.6E-06 61.1 1.2 30 226-255 248-277 (500)
139 TIGR03185 DNA_S_dndD DNA sulfu 83.6 1.8E+02 0.0039 39.4 32.9 98 1786-1896 367-465 (650)
140 KOG0963 Transcription factor/C 83.5 1.8E+02 0.0039 39.3 32.6 309 1578-1925 103-438 (629)
141 PRK12377 putative replication 83.4 0.67 1.4E-05 55.0 2.2 50 204-255 71-120 (248)
142 TIGR02680 conserved hypothetic 83.3 2.7E+02 0.0059 41.2 34.7 316 1726-2078 223-578 (1353)
143 PF00769 ERM: Ezrin/radixin/mo 82.4 57 0.0012 39.3 17.5 100 1716-1815 9-108 (246)
144 PRK08727 hypothetical protein; 82.3 0.7 1.5E-05 53.8 1.8 45 203-255 15-60 (233)
145 PRK08181 transposase; Validate 82.2 1 2.2E-05 54.2 3.1 47 205-256 79-126 (269)
146 COG0556 UvrB Helicase subunit 82.2 0.79 1.7E-05 59.0 2.3 48 203-255 4-51 (663)
147 TIGR00362 DnaA chromosomal rep 82.1 0.77 1.7E-05 57.3 2.2 51 202-255 105-155 (405)
148 PF08317 Spc7: Spc7 kinetochor 81.7 1.5E+02 0.0032 37.0 22.3 130 1709-1841 160-293 (325)
149 KOG0995 Centromere-associated 81.6 2E+02 0.0044 38.5 31.6 247 1641-1924 265-529 (581)
150 KOG0992 Uncharacterized conser 81.2 2E+02 0.0042 38.1 29.5 296 1591-1955 213-541 (613)
151 PF12718 Tropomyosin_1: Tropom 81.0 81 0.0018 35.2 16.8 90 1714-1807 51-140 (143)
152 cd00046 DEXDc DEAD-like helica 81.0 0.49 1.1E-05 47.1 0.0 18 239-256 3-20 (144)
153 PRK07952 DNA replication prote 80.9 1 2.2E-05 53.4 2.5 51 203-255 68-118 (244)
154 TIGR03420 DnaA_homol_Hda DnaA 80.6 1.1 2.4E-05 50.7 2.6 47 203-255 11-57 (226)
155 PRK00149 dnaA chromosomal repl 80.5 0.92 2E-05 57.6 2.1 51 202-255 117-167 (450)
156 PRK08116 hypothetical protein; 80.5 1.1 2.3E-05 53.6 2.6 51 203-255 81-133 (268)
157 PF09789 DUF2353: Uncharacteri 80.4 1.4E+02 0.003 37.6 20.0 183 1629-1841 3-185 (319)
158 TIGR01242 26Sp45 26S proteasom 80.4 1.2 2.7E-05 54.8 3.1 52 203-254 118-174 (364)
159 PF14662 CCDC155: Coiled-coil 80.3 1.3E+02 0.0028 35.5 20.0 86 1749-1839 59-145 (193)
160 PRK06835 DNA replication prote 80.2 0.79 1.7E-05 56.4 1.4 36 218-255 167-202 (329)
161 PF10473 CENP-F_leu_zip: Leuci 80.1 40 0.00086 37.7 14.0 109 1580-1688 11-119 (140)
162 cd00009 AAA The AAA+ (ATPases 80.0 1 2.2E-05 45.4 1.9 19 235-253 18-36 (151)
163 COG1474 CDC6 Cdc6-related prot 79.7 1.1 2.5E-05 55.8 2.5 26 228-253 33-59 (366)
164 PTZ00454 26S protease regulato 79.7 1.2 2.6E-05 56.2 2.7 51 203-253 141-196 (398)
165 KOG0978 E3 ubiquitin ligase in 79.6 2.6E+02 0.0057 38.5 44.1 89 1701-1789 261-353 (698)
166 KOG0963 Transcription factor/C 79.4 2E+02 0.0044 38.8 21.8 189 914-1143 122-313 (629)
167 PRK08903 DnaA regulatory inact 79.2 1.6 3.5E-05 50.0 3.3 49 202-255 13-61 (227)
168 PF12718 Tropomyosin_1: Tropom 79.1 71 0.0015 35.7 15.6 38 1777-1814 16-53 (143)
169 KOG0946 ER-Golgi vesicle-tethe 79.0 2.8E+02 0.0061 38.6 23.6 192 1603-1820 688-886 (970)
170 PRK14087 dnaA chromosomal repl 77.6 1.1 2.5E-05 57.1 1.7 50 203-255 111-160 (450)
171 KOG4673 Transcription factor T 77.4 2.9E+02 0.0063 37.8 38.1 98 1718-1816 408-521 (961)
172 COG1842 PspA Phage shock prote 77.0 1.4E+02 0.0031 35.8 18.2 108 1714-1830 40-147 (225)
173 PRK08939 primosomal protein Dn 76.8 1.3 2.8E-05 54.1 1.8 52 204-256 124-176 (306)
174 PRK12422 chromosomal replicati 76.3 1.8 3.9E-05 55.4 2.9 52 201-255 105-160 (445)
175 COG0593 DnaA ATPase involved i 76.1 1.4 3.1E-05 55.8 1.9 74 202-279 82-155 (408)
176 KOG0980 Actin-binding protein 75.8 1E+02 0.0023 42.7 18.2 155 1593-1795 413-567 (980)
177 PTZ00112 origin recognition co 75.8 2 4.3E-05 58.7 3.1 20 234-253 779-798 (1164)
178 PF10481 CENP-F_N: Cenp-F N-te 75.5 56 0.0012 40.0 14.3 146 1594-1749 19-192 (307)
179 KOG1029 Endocytic adaptor prot 75.3 3.4E+02 0.0074 37.6 22.2 146 1642-1822 430-589 (1118)
180 PF12846 AAA_10: AAA-like doma 75.2 1 2.2E-05 52.1 0.4 19 236-254 1-19 (304)
181 PF13401 AAA_22: AAA domain; P 74.7 0.97 2.1E-05 46.5 0.0 18 236-253 4-21 (131)
182 PF01935 DUF87: Domain of unkn 74.7 1.1 2.4E-05 51.2 0.5 17 237-253 24-40 (229)
183 TIGR02538 type_IV_pilB type IV 74.2 1.4 3E-05 57.8 1.2 29 227-255 307-335 (564)
184 PF05622 HOOK: HOOK protein; 74.1 1 2.2E-05 60.4 0.0 118 1705-1822 179-300 (713)
185 PTZ00361 26 proteosome regulat 74.0 3 6.5E-05 53.4 4.0 91 163-253 127-234 (438)
186 KOG0995 Centromere-associated 73.9 3.3E+02 0.0071 36.8 33.7 179 1717-1913 292-479 (581)
187 PRK09183 transposase/IS protei 73.8 2.1 4.6E-05 50.9 2.5 45 206-255 77-121 (259)
188 smart00787 Spc7 Spc7 kinetocho 73.7 59 0.0013 40.5 14.5 125 1786-1920 148-286 (312)
189 PRK09039 hypothetical protein; 73.7 92 0.002 39.2 16.4 14 1945-1958 310-323 (343)
190 PRK10436 hypothetical protein; 73.2 1.6 3.4E-05 56.2 1.3 29 227-255 209-237 (462)
191 PRK13894 conjugal transfer ATP 73.1 3.9 8.5E-05 50.4 4.5 28 226-254 139-166 (319)
192 TIGR02533 type_II_gspE general 73.0 1.7 3.7E-05 56.2 1.6 29 227-255 233-261 (486)
193 PF00270 DEAD: DEAD/DEAH box h 72.9 1.5 3.3E-05 46.8 0.9 27 228-256 8-34 (169)
194 PRK03992 proteasome-activating 72.2 2.7 5.8E-05 52.8 3.0 51 203-253 127-182 (389)
195 PF04012 PspA_IM30: PspA/IM30 72.0 2E+02 0.0044 33.5 18.5 100 1714-1815 39-138 (221)
196 KOG1924 RhoA GTPase effector D 71.9 14 0.00031 49.7 9.1 9 298-306 711-719 (1102)
197 smart00382 AAA ATPases associa 71.8 1.4 3.1E-05 43.7 0.4 19 237-255 3-21 (148)
198 PF01695 IstB_IS21: IstB-like 71.4 1.6 3.4E-05 49.3 0.6 20 237-256 48-67 (178)
199 TIGR02524 dot_icm_DotB Dot/Icm 71.2 2 4.4E-05 53.5 1.6 22 234-255 132-153 (358)
200 KOG0979 Structural maintenance 70.8 4.8E+02 0.01 37.4 22.8 97 1780-1900 186-282 (1072)
201 PF15070 GOLGA2L5: Putative go 70.8 4E+02 0.0087 36.5 28.1 32 2103-2134 477-508 (617)
202 COG1484 DnaC DNA replication p 70.7 3.1 6.8E-05 49.5 2.9 51 203-256 75-125 (254)
203 PRK06921 hypothetical protein; 70.6 2.9 6.4E-05 50.0 2.7 32 224-255 102-136 (266)
204 COG4372 Uncharacterized protei 70.5 3.2E+02 0.007 35.2 25.2 181 1804-2085 89-272 (499)
205 TIGR01420 pilT_fam pilus retra 70.4 2 4.4E-05 52.9 1.4 27 229-255 115-141 (343)
206 PF00437 T2SE: Type II/IV secr 70.3 1.8 3.9E-05 50.9 0.9 18 236-253 127-144 (270)
207 PF04849 HAP1_N: HAP1 N-termin 68.7 3.2E+02 0.0069 34.5 19.0 133 1596-1760 107-258 (306)
208 TIGR02525 plasmid_TraJ plasmid 68.6 2.4 5.1E-05 53.3 1.4 20 235-254 148-167 (372)
209 PF15358 TSKS: Testis-specific 68.5 17 0.00036 45.9 8.3 119 1703-1835 109-232 (558)
210 cd01131 PilT Pilus retraction 68.1 1.9 4.2E-05 49.0 0.4 19 236-254 1-19 (198)
211 PF04102 SlyX: SlyX; InterPro 67.7 14 0.00029 36.4 6.0 52 1787-1838 2-53 (69)
212 KOG0804 Cytoplasmic Zn-finger 67.3 91 0.002 40.5 14.3 50 1870-1927 418-467 (493)
213 COG1340 Uncharacterized archae 67.1 3.3E+02 0.0072 34.1 24.4 222 1562-1803 9-249 (294)
214 PF15619 Lebercilin: Ciliary p 66.6 2.7E+02 0.0058 32.8 19.3 82 1643-1731 13-94 (194)
215 PF04012 PspA_IM30: PspA/IM30 66.6 2.6E+02 0.0057 32.7 17.6 113 1714-1826 25-142 (221)
216 PRK02119 hypothetical protein; 66.3 24 0.00051 35.4 7.4 54 1784-1837 4-57 (73)
217 PF13245 AAA_19: Part of AAA d 66.1 2.8 6E-05 41.5 1.0 27 228-255 3-29 (76)
218 KOG4807 F-actin binding protei 65.9 3.9E+02 0.0085 34.4 22.7 91 666-763 458-575 (593)
219 KOG0989 Replication factor C, 65.6 4 8.6E-05 50.3 2.4 35 220-254 40-75 (346)
220 smart00053 DYNc Dynamin, GTPas 65.5 9.9 0.00021 45.3 5.6 54 340-408 85-138 (240)
221 PF13863 DUF4200: Domain of un 65.1 72 0.0016 33.9 11.3 86 1730-1822 29-114 (126)
222 PF12240 Angiomotin_C: Angiomo 65.1 94 0.002 36.8 12.8 31 1971-2008 128-158 (205)
223 PF04156 IncA: IncA protein; 65.1 86 0.0019 35.6 12.6 107 1627-1747 80-186 (191)
224 PF08172 CASP_C: CASP C termin 65.0 21 0.00046 43.0 8.2 35 1658-1692 1-35 (248)
225 PF13604 AAA_30: AAA domain; P 65.0 3.3 7.1E-05 47.3 1.5 28 227-254 9-36 (196)
226 COG1222 RPT1 ATP-dependent 26S 64.7 5.3 0.00011 50.1 3.2 86 164-251 96-200 (406)
227 PF11221 Med21: Subunit 21 of 64.4 47 0.001 36.9 10.1 79 1004-1089 64-142 (144)
228 PRK01297 ATP-dependent RNA hel 63.6 11 0.00024 48.2 6.0 26 227-254 117-142 (475)
229 PF13870 DUF4201: Domain of un 63.6 2.5E+02 0.0053 32.0 15.8 83 1707-1805 93-175 (177)
230 cd01129 PulE-GspE PulE/GspE Th 63.5 3.7 8.1E-05 49.1 1.7 28 228-255 72-99 (264)
231 PF05673 DUF815: Protein of un 62.8 2.7 5.8E-05 50.3 0.4 129 204-375 24-154 (249)
232 TIGR03015 pepcterm_ATPase puta 62.5 4.1 8.9E-05 47.4 1.7 25 230-254 37-61 (269)
233 PF10146 zf-C4H2: Zinc finger- 61.6 55 0.0012 39.2 10.6 89 2034-2123 12-101 (230)
234 PF15066 CAGE1: Cancer-associa 61.5 4.6E+02 0.0099 34.7 18.7 89 1714-1813 392-488 (527)
235 PRK04406 hypothetical protein; 61.1 30 0.00066 34.9 7.1 53 1786-1838 8-60 (75)
236 smart00487 DEXDc DEAD-like hel 61.1 4.7 0.0001 42.9 1.7 20 237-256 25-44 (201)
237 PRK10929 putative mechanosensi 61.0 7.7E+02 0.017 36.2 27.2 81 1790-1876 46-126 (1109)
238 TIGR01843 type_I_hlyD type I s 60.9 2.5E+02 0.0055 35.1 16.7 19 1909-1927 250-268 (423)
239 PF09787 Golgin_A5: Golgin sub 60.6 4.3E+02 0.0093 35.2 19.3 29 1741-1769 215-243 (511)
240 PF13094 CENP-Q: CENP-Q, a CEN 60.5 1E+02 0.0023 34.4 12.0 70 1854-1923 22-91 (160)
241 TIGR02782 TrbB_P P-type conjug 59.5 3.8 8.1E-05 50.0 0.8 28 226-254 123-150 (299)
242 PF08614 ATG16: Autophagy prot 58.8 48 0.0011 38.2 9.4 94 1622-1743 89-182 (194)
243 PF00580 UvrD-helicase: UvrD/R 58.8 4 8.8E-05 47.7 0.9 21 235-255 12-32 (315)
244 COG1842 PspA Phage shock prote 58.4 4E+02 0.0088 32.1 17.3 119 1714-1834 26-144 (225)
245 PRK12402 replication factor C 58.0 5.8 0.00013 47.6 2.0 44 204-255 12-55 (337)
246 PF01580 FtsK_SpoIIIE: FtsK/Sp 57.9 3.5 7.6E-05 46.6 0.1 18 238-255 40-57 (205)
247 PRK12723 flagellar biosynthesi 57.7 7.3 0.00016 49.4 2.8 19 236-254 174-192 (388)
248 PTZ00424 helicase 45; Provisio 57.6 4.7 0.0001 49.7 1.2 26 227-254 58-83 (401)
249 PF01637 Arch_ATPase: Archaeal 57.4 4.7 0.0001 44.8 1.1 28 227-254 11-38 (234)
250 TIGR03499 FlhF flagellar biosy 57.4 3.2 6.8E-05 50.0 -0.3 18 238-255 196-213 (282)
251 PF00448 SRP54: SRP54-type pro 57.4 3.7 8E-05 47.1 0.2 17 238-254 3-19 (196)
252 PF13086 AAA_11: AAA domain; P 57.3 4.3 9.3E-05 45.1 0.7 18 238-255 19-36 (236)
253 PF05970 PIF1: PIF1-like helic 56.8 6 0.00013 49.3 1.9 36 214-253 4-39 (364)
254 KOG1924 RhoA GTPase effector D 56.7 23 0.0005 47.8 6.9 9 215-223 654-662 (1102)
255 KOG4343 bZIP transcription fac 56.7 20 0.00043 46.7 6.2 10 247-256 211-220 (655)
256 PF10473 CENP-F_leu_zip: Leuci 56.6 3.4E+02 0.0074 30.7 16.5 36 1657-1692 32-67 (140)
257 PF13479 AAA_24: AAA domain 56.2 4.6 9.9E-05 46.5 0.7 21 236-256 3-23 (213)
258 PF13166 AAA_13: AAA domain 56.2 6.8E+02 0.015 34.1 22.1 46 1784-1829 426-471 (712)
259 PF13207 AAA_17: AAA domain; P 56.2 4.3 9.4E-05 41.5 0.5 16 238-253 1-16 (121)
260 PF00769 ERM: Ezrin/radixin/mo 55.6 2E+02 0.0044 34.8 14.0 117 1780-1923 17-133 (246)
261 PF05010 TACC: Transforming ac 55.5 4.3E+02 0.0094 31.6 20.5 163 966-1137 23-190 (207)
262 TIGR00634 recN DNA repair prot 55.3 3.5E+02 0.0075 36.3 17.4 10 1640-1649 231-240 (563)
263 PF12711 Kinesin-relat_1: Kine 55.1 75 0.0016 33.2 8.8 64 578-670 4-67 (86)
264 KOG4360 Uncharacterized coiled 55.1 1.1E+02 0.0025 40.2 12.2 192 1717-1933 95-305 (596)
265 cd00268 DEADc DEAD-box helicas 54.8 6.7 0.00015 43.7 1.7 23 229-253 31-53 (203)
266 PF12325 TMF_TATA_bd: TATA ele 54.8 1.3E+02 0.0027 33.1 11.0 48 1790-1837 17-64 (120)
267 PF00004 AAA: ATPase family as 54.8 4.6 9.9E-05 41.3 0.4 15 239-253 1-15 (132)
268 PRK02793 phi X174 lysis protei 54.6 46 0.001 33.3 7.1 52 1787-1838 6-57 (72)
269 PRK00295 hypothetical protein; 54.5 45 0.00098 33.0 7.0 51 1787-1837 3-53 (68)
270 COG0497 RecN ATPase involved i 54.4 2.3E+02 0.005 38.2 15.2 39 1587-1626 179-217 (557)
271 KOG0738 AAA+-type ATPase [Post 54.3 8 0.00017 49.0 2.3 47 204-250 209-259 (491)
272 COG5008 PilU Tfp pilus assembl 54.1 7.7 0.00017 47.1 2.1 35 220-254 110-145 (375)
273 COG4026 Uncharacterized protei 54.0 39 0.00085 40.1 7.5 73 2055-2127 136-208 (290)
274 PF05103 DivIVA: DivIVA protei 53.7 11 0.00023 40.1 2.9 69 1712-1780 18-86 (131)
275 PF08614 ATG16: Autophagy prot 53.4 42 0.0009 38.7 7.7 101 1632-1753 71-171 (194)
276 TIGR01843 type_I_hlyD type I s 53.4 5.5E+02 0.012 32.2 21.1 29 1725-1753 136-164 (423)
277 KOG0926 DEAH-box RNA helicase 53.3 22 0.00048 48.4 6.0 58 696-755 891-959 (1172)
278 KOG0727 26S proteasome regulat 53.0 13 0.00027 44.9 3.5 79 204-282 152-244 (408)
279 PRK13833 conjugal transfer pro 53.0 6.5 0.00014 48.7 1.3 28 226-254 135-162 (323)
280 TIGR00634 recN DNA repair prot 52.5 7.3E+02 0.016 33.3 22.1 46 1619-1664 159-204 (563)
281 PF05335 DUF745: Protein of un 52.4 4.6E+02 0.01 31.0 16.9 92 1660-1772 50-141 (188)
282 PF02562 PhoH: PhoH-like prote 52.2 8.1 0.00018 45.1 1.9 21 235-255 18-38 (205)
283 PHA00729 NTP-binding motif con 51.9 8.4 0.00018 45.7 2.0 32 224-255 5-36 (226)
284 PF10146 zf-C4H2: Zinc finger- 51.8 81 0.0018 37.9 9.8 90 1653-1749 5-97 (230)
285 PRK11776 ATP-dependent RNA hel 51.6 7.6 0.00017 49.4 1.7 23 229-253 36-58 (460)
286 PRK10536 hypothetical protein; 51.5 7.6 0.00016 47.0 1.5 41 204-254 52-92 (262)
287 PLN03188 kinesin-12 family pro 51.5 7.9E+02 0.017 36.3 20.0 142 1763-1912 1067-1268(1320)
288 PRK13342 recombination factor 51.2 7.7 0.00017 49.0 1.6 38 215-253 16-53 (413)
289 TIGR00635 ruvB Holliday juncti 51.1 9.9 0.00022 45.4 2.4 44 210-254 3-48 (305)
290 PRK13764 ATPase; Provisional 51.1 6.9 0.00015 52.1 1.2 22 234-255 255-276 (602)
291 KOG1003 Actin filament-coating 51.0 5E+02 0.011 31.0 19.6 76 1702-1812 113-188 (205)
292 PF13191 AAA_16: AAA ATPase do 50.9 4.4 9.5E-05 44.0 -0.5 23 231-253 19-41 (185)
293 KOG0971 Microtubule-associated 50.7 9.8E+02 0.021 34.3 35.7 216 1648-1927 223-456 (1243)
294 PF09728 Taxilin: Myosin-like 50.3 6.2E+02 0.013 31.9 17.4 161 1581-1756 123-302 (309)
295 PRK00736 hypothetical protein; 50.3 58 0.0013 32.3 7.0 51 1787-1837 3-53 (68)
296 cd01130 VirB11-like_ATPase Typ 50.3 8.2 0.00018 43.4 1.5 28 226-254 16-43 (186)
297 PF10186 Atg14: UV radiation r 50.2 4.9E+02 0.011 31.1 16.1 52 1782-1833 56-107 (302)
298 PHA02544 44 clamp loader, smal 49.9 7.4 0.00016 46.7 1.1 23 233-255 39-62 (316)
299 PRK10698 phage shock protein P 48.8 5.5E+02 0.012 30.8 19.8 176 1641-1833 30-217 (222)
300 PF06160 EzrA: Septation ring 48.8 8.4E+02 0.018 33.0 28.5 41 1874-1914 466-508 (560)
301 PRK13851 type IV secretion sys 48.7 6.5 0.00014 49.0 0.4 28 227-255 154-181 (344)
302 PRK11448 hsdR type I restricti 48.3 8.3 0.00018 54.7 1.3 34 221-255 419-452 (1123)
303 PF05278 PEARLI-4: Arabidopsis 48.2 4E+02 0.0086 33.1 14.8 135 1958-2132 130-264 (269)
304 COG4962 CpaF Flp pilus assembl 48.1 8.1 0.00017 48.3 1.1 27 226-253 164-190 (355)
305 KOG0239 Kinesin (KAR3 subfamil 47.9 5.3E+02 0.011 35.7 17.4 41 1722-1762 164-204 (670)
306 PRK11192 ATP-dependent RNA hel 47.7 8.9 0.00019 48.3 1.4 24 228-253 32-55 (434)
307 PF04111 APG6: Autophagy prote 47.6 1.2E+02 0.0027 37.7 11.0 84 1640-1751 48-131 (314)
308 CHL00081 chlI Mg-protoporyphyr 47.0 6.9 0.00015 49.0 0.3 45 203-255 13-57 (350)
309 PF07724 AAA_2: AAA domain (Cd 46.7 7.5 0.00016 43.8 0.5 17 237-253 4-20 (171)
310 smart00787 Spc7 Spc7 kinetocho 46.3 5.3E+02 0.011 32.5 15.9 34 1590-1623 144-177 (312)
311 PRK13900 type IV secretion sys 46.1 9.7 0.00021 47.2 1.4 29 226-255 151-179 (332)
312 PF02183 HALZ: Homeobox associ 46.0 31 0.00067 31.9 4.1 39 1713-1751 6-44 (45)
313 PF12761 End3: Actin cytoskele 46.0 1.8E+02 0.0039 34.5 11.1 99 1781-1893 95-194 (195)
314 cd07666 BAR_SNX7 The Bin/Amphi 45.9 6.5E+02 0.014 30.8 17.7 64 1726-1820 149-212 (243)
315 PF15294 Leu_zip: Leucine zipp 45.8 2E+02 0.0044 35.6 12.0 103 1348-1452 132-234 (278)
316 PF10168 Nup88: Nuclear pore c 45.8 6.2E+02 0.013 35.3 17.8 11 67-77 42-52 (717)
317 TIGR02881 spore_V_K stage V sp 45.8 14 0.00031 43.6 2.7 19 236-254 42-60 (261)
318 TIGR01241 FtsH_fam ATP-depende 45.8 8.9 0.00019 49.6 1.0 51 203-254 51-106 (495)
319 COG1223 Predicted ATPase (AAA+ 45.6 8 0.00017 46.9 0.5 44 204-253 118-168 (368)
320 TIGR02903 spore_lon_C ATP-depe 45.6 12 0.00025 50.1 2.1 42 204-253 151-192 (615)
321 PHA02653 RNA helicase NPH-II; 45.4 18 0.0004 48.9 3.8 25 226-252 171-195 (675)
322 PRK10884 SH3 domain-containing 45.4 98 0.0021 36.6 9.1 67 2053-2122 99-165 (206)
323 PRK04837 ATP-dependent RNA hel 45.1 11 0.00023 47.6 1.5 24 228-253 39-62 (423)
324 PF13671 AAA_33: AAA domain; P 45.1 8.7 0.00019 40.3 0.6 15 239-253 2-16 (143)
325 TIGR01005 eps_transp_fam exopo 45.0 1E+03 0.022 32.9 21.9 118 1719-1837 237-372 (754)
326 PF13238 AAA_18: AAA domain; P 44.9 8.8 0.00019 39.1 0.6 15 239-253 1-15 (129)
327 TIGR02977 phageshock_pspA phag 44.8 2E+02 0.0044 33.9 11.6 106 1718-1832 44-149 (219)
328 PF04111 APG6: Autophagy prote 44.7 1.9E+02 0.0041 36.2 11.9 27 1720-1746 10-36 (314)
329 KOG1937 Uncharacterized conser 44.7 9E+02 0.02 32.1 25.4 61 1714-1776 391-451 (521)
330 PRK06067 flagellar accessory p 44.7 13 0.00028 43.0 2.0 31 223-253 9-42 (234)
331 PF06048 DUF927: Domain of unk 44.5 13 0.00028 44.9 2.1 35 218-253 176-210 (286)
332 TIGR00348 hsdR type I site-spe 44.3 12 0.00026 50.3 1.9 32 224-256 247-283 (667)
333 PLN00020 ribulose bisphosphate 44.1 16 0.00034 46.6 2.6 50 203-252 111-164 (413)
334 PF00910 RNA_helicase: RNA hel 43.9 7.3 0.00016 40.3 -0.1 15 239-253 1-15 (107)
335 KOG1510 RNA polymerase II holo 43.9 1.6E+02 0.0035 33.1 9.7 63 1024-1086 64-126 (139)
336 PF06156 DUF972: Protein of un 43.8 50 0.0011 35.4 5.9 53 2072-2124 5-57 (107)
337 cd07667 BAR_SNX30 The Bin/Amph 43.7 7E+02 0.015 30.6 16.7 72 1726-1828 146-218 (240)
338 PRK04325 hypothetical protein; 43.6 85 0.0018 31.6 7.1 51 1787-1837 7-57 (74)
339 PF11559 ADIP: Afadin- and alp 43.6 3.1E+02 0.0066 30.5 12.1 115 1793-1925 32-146 (151)
340 KOG2129 Uncharacterized conser 43.5 3.6E+02 0.0078 35.1 13.7 228 592-854 51-306 (552)
341 cd07627 BAR_Vps5p The Bin/Amph 43.3 6.2E+02 0.013 29.9 17.4 44 1596-1639 7-50 (216)
342 KOG2543 Origin recognition com 43.1 9.3 0.0002 48.3 0.6 17 238-254 32-48 (438)
343 PF07728 AAA_5: AAA domain (dy 43.0 8.4 0.00018 40.7 0.1 15 239-253 2-16 (139)
344 PRK00846 hypothetical protein; 43.0 86 0.0019 32.1 7.0 51 1787-1837 11-61 (77)
345 PF13851 GAS: Growth-arrest sp 42.8 2E+02 0.0043 33.9 11.0 100 653-764 26-132 (201)
346 PF00063 Myosin_head: Myosin h 42.7 13 0.00028 50.1 1.8 36 218-253 67-102 (689)
347 KOG0946 ER-Golgi vesicle-tethe 42.3 1.2E+03 0.027 33.0 22.2 94 1571-1674 611-710 (970)
348 PLN03025 replication factor C 41.9 12 0.00025 45.7 1.1 42 205-255 11-53 (319)
349 PRK10590 ATP-dependent RNA hel 41.8 14 0.00029 47.3 1.8 24 228-253 32-55 (456)
350 KOG0979 Structural maintenance 41.8 1.4E+03 0.029 33.4 21.1 49 1868-1927 865-914 (1072)
351 COG1219 ClpX ATP-dependent pro 41.7 11 0.00024 46.9 0.8 18 235-252 96-113 (408)
352 cd07666 BAR_SNX7 The Bin/Amphi 41.7 6.5E+02 0.014 30.8 15.2 46 1707-1752 151-196 (243)
353 PRK14722 flhF flagellar biosyn 41.6 10 0.00022 48.0 0.5 20 236-255 137-156 (374)
354 PF05496 RuvB_N: Holliday junc 41.5 24 0.00052 42.3 3.5 42 210-252 23-66 (233)
355 PHA02244 ATPase-like protein 41.2 18 0.00039 46.0 2.5 26 226-253 111-136 (383)
356 PF05266 DUF724: Protein of un 40.8 2.5E+02 0.0055 32.9 11.4 60 1778-1837 127-186 (190)
357 KOG0018 Structural maintenance 40.8 1.4E+03 0.031 33.4 27.9 290 1560-1899 158-470 (1141)
358 PRK11281 hypothetical protein; 40.8 1.5E+03 0.032 33.5 26.1 250 1791-2110 62-334 (1113)
359 PRK05580 primosome assembly pr 40.7 15 0.00032 49.7 1.8 43 206-255 139-181 (679)
360 PF10805 DUF2730: Protein of u 40.4 77 0.0017 33.7 6.6 64 1772-1837 27-92 (106)
361 COG1382 GimC Prefoldin, chaper 40.2 1.8E+02 0.0039 32.1 9.4 90 1614-1732 20-111 (119)
362 PF04156 IncA: IncA protein; 39.9 3.8E+02 0.0082 30.6 12.5 53 2077-2129 139-191 (191)
363 PRK00080 ruvB Holliday junctio 39.8 19 0.0004 44.1 2.4 18 237-254 52-69 (328)
364 PRK00771 signal recognition pa 39.8 24 0.00051 45.6 3.4 19 236-254 95-113 (437)
365 COG4372 Uncharacterized protei 39.7 9.9E+02 0.022 31.2 22.6 182 1592-1808 87-278 (499)
366 TIGR02767 TraG-Ti Ti-type conj 39.5 36 0.00078 45.9 5.0 17 237-253 212-228 (623)
367 PRK13341 recombination factor 39.5 16 0.00035 49.8 2.0 23 233-255 49-71 (725)
368 PF06785 UPF0242: Uncharacteri 39.5 8.1E+02 0.017 31.4 15.5 84 678-766 138-221 (401)
369 PF03215 Rad17: Rad17 cell cyc 39.5 15 0.00032 48.4 1.5 29 225-253 32-62 (519)
370 KOG0335 ATP-dependent RNA heli 39.3 14 0.0003 48.0 1.3 24 232-257 109-132 (482)
371 PRK04328 hypothetical protein; 39.2 18 0.00039 42.9 2.1 29 223-251 7-38 (249)
372 KOG0999 Microtubule-associated 39.0 1.2E+03 0.025 31.8 25.0 215 1567-1827 28-253 (772)
373 TIGR00614 recQ_fam ATP-depende 38.9 17 0.00036 46.8 1.9 26 227-254 19-44 (470)
374 PF09738 DUF2051: Double stran 38.8 4.8E+02 0.01 32.9 13.9 52 1783-1834 113-164 (302)
375 COG2256 MGS1 ATPase related to 38.6 16 0.00034 46.7 1.6 37 215-252 28-64 (436)
376 PF06414 Zeta_toxin: Zeta toxi 38.5 12 0.00026 42.5 0.5 18 237-254 16-33 (199)
377 PF02534 T4SS-DNA_transf: Type 38.2 20 0.00044 45.7 2.4 18 237-254 45-62 (469)
378 TIGR03007 pepcterm_ChnLen poly 38.2 4.1E+02 0.0089 34.6 14.0 90 1597-1692 201-290 (498)
379 COG1201 Lhr Lhr-like helicases 38.1 18 0.00039 49.8 2.0 25 227-253 30-54 (814)
380 PRK09361 radB DNA repair and r 38.1 20 0.00044 41.2 2.2 32 223-254 7-41 (225)
381 PF07058 Myosin_HC-like: Myosi 38.0 2.2E+02 0.0049 35.6 10.6 96 1645-1756 3-138 (351)
382 PF10481 CENP-F_N: Cenp-F N-te 37.9 2.8E+02 0.0061 34.4 11.3 43 1797-1839 19-61 (307)
383 PRK13822 conjugal transfer cou 37.9 39 0.00085 45.7 5.1 17 237-253 225-241 (641)
384 PRK00440 rfc replication facto 37.6 19 0.00041 42.9 2.0 21 233-253 35-55 (319)
385 TIGR02237 recomb_radB DNA repa 37.4 16 0.00035 41.3 1.3 25 229-253 2-29 (209)
386 PRK11634 ATP-dependent RNA hel 37.3 17 0.00037 48.7 1.7 24 228-253 37-60 (629)
387 TIGR00631 uvrb excinuclease AB 37.2 20 0.00043 48.5 2.2 93 204-311 2-98 (655)
388 KOG0962 DNA repair protein RAD 37.1 1.7E+03 0.038 33.3 58.4 287 1607-1900 517-867 (1294)
389 PF00170 bZIP_1: bZIP transcri 37.0 58 0.0013 31.3 4.7 38 2089-2126 26-63 (64)
390 PF15066 CAGE1: Cancer-associa 36.8 6.4E+02 0.014 33.5 14.6 92 652-762 336-427 (527)
391 COG2433 Uncharacterized conser 36.8 2.2E+02 0.0047 38.6 10.9 41 1714-1754 424-464 (652)
392 KOG1103 Predicted coiled-coil 36.7 53 0.0012 40.9 5.4 34 68-101 391-425 (561)
393 TIGR02977 phageshock_pspA phag 36.5 7.9E+02 0.017 29.2 21.2 120 1716-1837 28-147 (219)
394 PRK04195 replication factor C 36.3 14 0.0003 47.8 0.6 28 226-253 28-56 (482)
395 PF06745 KaiC: KaiC; InterPro 36.3 20 0.00044 41.1 1.9 30 223-252 3-35 (226)
396 PHA02607 wac fibritin; Provisi 36.2 2.1E+02 0.0046 37.5 10.6 193 1711-1920 37-240 (454)
397 KOG1937 Uncharacterized conser 36.1 1.2E+03 0.026 31.1 17.7 100 666-765 371-488 (521)
398 PF15272 BBP1_C: Spindle pole 36.0 2.9E+02 0.0062 32.9 10.8 69 1858-1926 74-153 (196)
399 PF02456 Adeno_IVa2: Adenoviru 36.0 12 0.00027 46.2 0.1 101 240-353 91-211 (369)
400 cd01123 Rad51_DMC1_radA Rad51_ 35.9 21 0.00046 41.0 1.9 31 223-253 3-36 (235)
401 PF12325 TMF_TATA_bd: TATA ele 35.8 4.1E+02 0.0088 29.4 11.2 95 1593-1691 16-110 (120)
402 KOG0953 Mitochondrial RNA heli 35.8 16 0.00034 48.1 1.0 43 239-283 194-236 (700)
403 PF04849 HAP1_N: HAP1 N-termin 35.6 1E+03 0.022 30.2 21.8 90 1715-1808 156-253 (306)
404 smart00763 AAA_PrkA PrkA AAA d 35.5 64 0.0014 41.0 6.0 72 203-280 45-142 (361)
405 PRK06547 hypothetical protein; 35.3 23 0.0005 40.1 2.1 26 228-253 7-32 (172)
406 PRK04537 ATP-dependent RNA hel 35.2 17 0.00037 48.2 1.1 24 228-253 40-63 (572)
407 PRK11331 5-methylcytosine-spec 35.0 17 0.00038 47.0 1.2 30 464-497 320-349 (459)
408 PF06309 Torsin: Torsin; Inte 34.5 15 0.00032 40.4 0.4 14 239-252 55-69 (127)
409 COG3883 Uncharacterized protei 34.4 1E+03 0.022 29.8 17.8 26 1714-1739 192-217 (265)
410 PF08647 BRE1: BRE1 E3 ubiquit 34.2 4.5E+02 0.0098 27.6 10.9 68 1593-1660 3-70 (96)
411 PRK14961 DNA polymerase III su 34.2 18 0.0004 45.0 1.2 41 205-253 14-55 (363)
412 TIGR03007 pepcterm_ChnLen poly 34.1 1.2E+03 0.026 30.5 20.3 87 1715-1802 200-295 (498)
413 TIGR03819 heli_sec_ATPase heli 33.9 46 0.00099 41.7 4.4 29 225-254 168-196 (340)
414 smart00242 MYSc Myosin. Large 33.8 27 0.00058 47.3 2.7 36 218-253 74-109 (677)
415 PF13166 AAA_13: AAA domain 33.7 1.1E+03 0.023 32.4 17.2 66 1722-1787 406-471 (712)
416 PRK10917 ATP-dependent DNA hel 33.6 28 0.00061 47.1 2.8 42 210-255 260-301 (681)
417 TIGR02902 spore_lonB ATP-depen 33.3 23 0.00049 46.7 1.8 42 204-253 62-103 (531)
418 cd01394 radB RadB. The archaea 33.3 26 0.00056 40.0 2.1 31 223-253 3-36 (218)
419 PF00170 bZIP_1: bZIP transcri 33.2 97 0.0021 29.8 5.5 45 1770-1814 14-58 (64)
420 TIGR03881 KaiC_arch_4 KaiC dom 33.2 25 0.00055 40.4 2.0 31 223-253 4-37 (229)
421 TIGR02746 TraC-F-type type-IV 33.1 15 0.00034 49.8 0.3 19 236-254 430-448 (797)
422 TIGR02640 gas_vesic_GvpN gas v 33.1 29 0.00062 41.5 2.5 26 226-253 13-38 (262)
423 TIGR01243 CDC48 AAA family ATP 33.0 19 0.00041 48.9 1.1 51 203-253 174-229 (733)
424 COG1419 FlhF Flagellar GTP-bin 33.0 27 0.00058 44.8 2.3 18 236-253 203-220 (407)
425 KOG2373 Predicted mitochondria 33.0 31 0.00067 43.4 2.7 30 225-255 260-292 (514)
426 PF12775 AAA_7: P-loop contain 32.8 20 0.00043 43.3 1.1 28 227-255 25-52 (272)
427 cd01126 TraG_VirD4 The TraG/Tr 32.8 22 0.00048 44.4 1.5 16 239-254 2-17 (384)
428 cd00632 Prefoldin_beta Prefold 32.8 5.1E+02 0.011 27.3 11.2 101 1646-1752 3-103 (105)
429 KOG0651 26S proteasome regulat 32.7 26 0.00055 43.8 2.0 89 164-252 78-182 (388)
430 PRK05703 flhF flagellar biosyn 32.6 16 0.00035 46.8 0.4 19 237-255 222-240 (424)
431 TIGR03744 traC_PFL_4706 conjug 32.5 16 0.00034 50.9 0.3 22 234-255 473-494 (893)
432 TIGR00929 VirB4_CagE type IV s 32.3 11 0.00023 51.1 -1.4 18 236-253 434-451 (785)
433 PF12329 TMF_DNA_bd: TATA elem 32.2 2E+02 0.0043 29.1 7.6 67 1626-1692 3-69 (74)
434 TIGR01069 mutS2 MutS2 family p 31.9 2.8E+02 0.0061 38.7 11.5 71 1569-1639 487-557 (771)
435 PRK10884 SH3 domain-containing 31.9 2.6E+02 0.0056 33.3 9.8 38 1640-1677 130-167 (206)
436 PF05911 DUF869: Plant protein 31.7 1.7E+03 0.037 31.6 48.2 279 1595-1921 12-309 (769)
437 cd01127 TrwB Bacterial conjuga 31.7 17 0.00036 46.2 0.3 19 236-254 42-60 (410)
438 CHL00176 ftsH cell division pr 31.7 20 0.00044 48.2 1.0 49 203-253 179-233 (638)
439 KOG4552 Vitamin-D-receptor int 31.6 6.7E+02 0.015 30.2 12.6 104 954-1091 6-121 (272)
440 PF10186 Atg14: UV radiation r 31.5 9.7E+02 0.021 28.7 15.5 24 1640-1663 25-48 (302)
441 cd01120 RecA-like_NTPases RecA 31.5 17 0.00036 38.1 0.2 17 239-255 2-18 (165)
442 PLN00206 DEAD-box ATP-dependen 31.3 27 0.0006 45.6 2.1 24 228-253 152-175 (518)
443 KOG0741 AAA+-type ATPase [Post 31.1 19 0.0004 47.3 0.5 14 238-251 258-271 (744)
444 PRK13169 DNA replication intia 31.0 1.1E+02 0.0023 33.3 5.9 51 2073-2123 6-56 (110)
445 PF05729 NACHT: NACHT domain 30.9 19 0.00041 38.1 0.5 17 238-254 2-18 (166)
446 TIGR03158 cas3_cyano CRISPR-as 30.9 31 0.00067 43.0 2.4 27 229-255 7-33 (357)
447 KOG0994 Extracellular matrix g 30.8 2.1E+03 0.045 32.3 41.2 71 1624-1694 1204-1284(1758)
448 cd01393 recA_like RecA is a b 30.7 34 0.00073 39.1 2.4 32 223-254 3-37 (226)
449 PF07716 bZIP_2: Basic region 30.7 95 0.0021 29.1 4.9 42 1770-1811 13-54 (54)
450 PF14992 TMCO5: TMCO5 family 30.5 4.9E+02 0.011 32.5 12.0 51 1673-1741 28-78 (280)
451 PF07889 DUF1664: Protein of u 30.4 4.3E+02 0.0092 29.5 10.4 82 1715-1803 39-124 (126)
452 PF13514 AAA_27: AAA domain 30.4 2E+03 0.043 31.9 54.7 64 1328-1395 151-214 (1111)
453 TIGR00376 DNA helicase, putati 30.4 24 0.00053 47.4 1.4 19 237-255 174-192 (637)
454 TIGR03689 pup_AAA proteasome A 30.2 17 0.00036 47.8 -0.1 50 204-253 179-233 (512)
455 PRK10865 protein disaggregatio 30.1 28 0.0006 48.4 1.9 43 206-253 567-615 (857)
456 PF15290 Syntaphilin: Golgi-lo 30.0 7.1E+02 0.015 31.3 12.9 39 621-671 96-134 (305)
457 PF13476 AAA_23: AAA domain; P 29.8 19 0.00042 39.3 0.3 17 237-253 20-36 (202)
458 PRK00131 aroK shikimate kinase 29.7 23 0.00049 38.3 0.8 17 237-253 5-21 (175)
459 TIGR01618 phage_P_loop phage n 29.5 21 0.00046 42.2 0.6 21 236-256 12-32 (220)
460 PRK03947 prefoldin subunit alp 29.5 4.2E+02 0.0091 29.0 10.3 113 1642-1758 6-133 (140)
461 COG4152 ABC-type uncharacteriz 29.5 20 0.00044 43.4 0.5 32 242-273 34-86 (300)
462 cd01383 MYSc_type_VIII Myosin 29.2 41 0.00088 45.8 3.1 34 219-253 75-109 (677)
463 cd02021 GntK Gluconate kinase 29.1 20 0.00044 38.3 0.4 15 239-253 2-16 (150)
464 cd01384 MYSc_type_XI Myosin mo 29.1 39 0.00084 45.9 3.0 22 232-253 84-105 (674)
465 COG4026 Uncharacterized protei 29.0 3.4E+02 0.0073 32.9 9.8 55 652-718 147-202 (290)
466 TIGR03877 thermo_KaiC_1 KaiC d 28.8 35 0.00075 40.1 2.2 29 223-251 5-36 (237)
467 TIGR00602 rad24 checkpoint pro 28.6 27 0.00059 47.1 1.4 18 238-255 112-129 (637)
468 PRK10416 signal recognition pa 28.6 37 0.0008 42.1 2.4 18 237-254 115-132 (318)
469 cd01385 MYSc_type_IX Myosin mo 28.6 39 0.00085 46.0 2.9 21 233-253 91-111 (692)
470 smart00489 DEXDc3 DEAD-like he 28.6 31 0.00068 41.9 1.8 38 212-255 9-46 (289)
471 smart00488 DEXDc2 DEAD-like he 28.6 31 0.00068 41.9 1.8 38 212-255 9-46 (289)
472 CHL00181 cbbX CbbX; Provisiona 28.4 43 0.00093 40.9 2.9 15 239-253 62-76 (287)
473 KOG1853 LIS1-interacting prote 28.3 1.2E+03 0.027 28.9 17.4 43 598-640 77-119 (333)
474 KOG0739 AAA+-type ATPase [Post 28.2 29 0.00062 43.1 1.3 45 209-253 135-183 (439)
475 PF06785 UPF0242: Uncharacteri 28.2 7.4E+02 0.016 31.7 12.8 51 1726-1776 148-202 (401)
476 cd00124 MYSc Myosin motor doma 28.2 40 0.00086 45.8 2.8 34 219-253 69-103 (679)
477 KOG0804 Cytoplasmic Zn-finger 28.1 8.2E+02 0.018 32.5 13.6 16 703-718 431-446 (493)
478 PRK14974 cell division protein 28.1 46 0.001 41.7 3.2 19 236-254 140-158 (336)
479 cd01381 MYSc_type_VII Myosin m 28.1 43 0.00093 45.5 3.1 21 233-253 83-103 (671)
480 KOG4438 Centromere-associated 28.0 1.6E+03 0.034 29.9 31.8 146 1611-1762 145-291 (446)
481 TIGR02030 BchI-ChlI magnesium 28.0 25 0.00055 43.9 0.9 44 204-255 1-44 (337)
482 KOG2751 Beclin-like protein [S 28.0 5.2E+02 0.011 34.0 11.9 134 1324-1493 157-290 (447)
483 COG1125 OpuBA ABC-type proline 27.9 18 0.00039 44.1 -0.4 12 242-253 33-44 (309)
484 PF06005 DUF904: Protein of un 27.9 2.1E+02 0.0046 29.0 7.0 52 1782-1833 4-55 (72)
485 PF13094 CENP-Q: CENP-Q, a CEN 27.8 8E+02 0.017 27.6 12.4 130 1614-1756 20-159 (160)
486 TIGR02788 VirB11 P-type DNA tr 27.7 30 0.00064 42.4 1.4 29 225-254 134-162 (308)
487 PF15070 GOLGA2L5: Putative go 27.6 1.8E+03 0.039 30.6 38.4 46 2092-2137 470-523 (617)
488 KOG1803 DNA helicase [Replicat 27.6 24 0.00051 46.9 0.6 17 238-254 203-219 (649)
489 KOG0924 mRNA splicing factor A 27.5 58 0.0012 44.1 3.9 20 234-253 369-388 (1042)
490 TIGR02338 gimC_beta prefoldin, 27.4 6.9E+02 0.015 26.7 11.1 104 1644-1753 5-108 (110)
491 COG4096 HsdR Type I site-speci 27.3 46 0.001 45.8 3.1 36 219-255 168-204 (875)
492 TIGR00643 recG ATP-dependent D 27.3 41 0.00089 45.1 2.7 41 210-254 234-274 (630)
493 TIGR03878 thermo_KaiC_2 KaiC d 27.1 36 0.00077 40.7 1.9 19 233-251 31-51 (259)
494 PRK10869 recombination and rep 27.1 1.7E+03 0.037 30.1 18.5 190 1589-1785 167-380 (553)
495 cd01378 MYSc_type_I Myosin mot 27.0 45 0.00099 45.3 3.0 22 232-253 82-103 (674)
496 cd01387 MYSc_type_XV Myosin mo 26.9 44 0.00095 45.5 2.9 34 219-253 70-104 (677)
497 PRK15429 formate hydrogenlyase 26.9 32 0.00069 46.5 1.6 44 204-253 373-416 (686)
498 PF00735 Septin: Septin; Inte 26.9 22 0.00048 43.3 0.1 20 233-252 1-20 (281)
499 cd00464 SK Shikimate kinase (S 26.9 26 0.00057 37.2 0.7 16 238-253 1-16 (154)
500 PRK13830 conjugal transfer pro 26.8 47 0.001 46.1 3.1 60 171-253 414-473 (818)
No 1
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=5.2e-105 Score=1005.83 Aligned_cols=559 Identities=47% Similarity=0.747 Sum_probs=473.1
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCCCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCce
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSC 238 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~T 238 (2159)
.+.+|+|+|||||++..|. +...+... ....+.+. ...|+||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 96 ~ds~VkV~VRVRPl~~~E~---g~~iV~~~-s~dsl~I~---~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaT 168 (1320)
T PLN03188 96 SDSGVKVIVRMKPLNKGEE---GEMIVQKM-SNDSLTIN---GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSS 168 (1320)
T ss_pred CCCCeEEEEEcCCCCCccC---CCeeEEEc-CCCeEEEe---CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcce
Confidence 3779999999999998753 33334333 34444443 35799999999999999999999999999999999999
Q ss_pred eEeecccCCCcceeeccccccc--cCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCC
Q 000113 239 MFAYGQTGSGKTYTMMGEINEV--EGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEP 316 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM~G~~~~~--~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p 316 (2159)
|||||||||||||||+|+.+.. ......++|||||++++||.+|........+..+.|.|+|||+|||||+|||||+|
T Consensus 169 IFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp 248 (1320)
T PLN03188 169 VFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDP 248 (1320)
T ss_pred eecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccc
Confidence 9999999999999999975321 11224678999999999999997544444456788999999999999999999999
Q ss_pred CCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecC--CCccceeE
Q 000113 317 SSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEK--DSMTHFRF 394 (2159)
Q Consensus 317 ~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~--~~~t~~r~ 394 (2159)
...++.|++|+++|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+.... ++....+.
T Consensus 249 ~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~ 328 (1320)
T PLN03188 249 SQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKT 328 (1320)
T ss_pred ccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEE
Confidence 9889999999999999999999999999999999999999999999999999999999999999876432 33445678
Q ss_pred eEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhc-CCCCCCccCCcchhhHHhhhhcCCCccEEEE
Q 000113 395 ARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSA-QGKHRHVPYRDSRLTFLLQDSLGGNSKTTII 473 (2159)
Q Consensus 395 SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a-~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MI 473 (2159)
|+|+|||||||||.+.+++.|.|++||++||+||++||+||.+|++.+ .++..||||||||||+||||||||||+|+||
T Consensus 329 SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMI 408 (1320)
T PLN03188 329 SRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMV 408 (1320)
T ss_pred EEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEE
Confidence 999999999999999999999999999999999999999999998754 4567899999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHHHHHHHhcCccCCC-------------
Q 000113 474 ANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGDVTALQRQIQQLKDKLSSLMKHQNLLRSP------------- 540 (2159)
Q Consensus 474 a~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~~v~~L~~eIq~LK~eL~~l~~~~~~~~s~------------- 540 (2159)
|||||+..++.||++||+||+|||.|+|+|++|.....++..|+..|.+|+.+|.+++...+.+..+
T Consensus 409 a~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p~~~n~~y~t~~~~r~s 488 (1320)
T PLN03188 409 CAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNNPTNPNVAYSTAWNARRS 488 (1320)
T ss_pred EecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccchhHHHH
Confidence 9999999999999999999999999999999999988888889999999999999998764433210
Q ss_pred -----C--CCC----C---cCC----CCCcccccc---------------------------------------------
Q 000113 541 -----S--SST----P---EVG----ESSQGDIIK--------------------------------------------- 557 (2159)
Q Consensus 541 -----~--~~~----~---e~~----~~~~~~~~~--------------------------------------------- 557 (2159)
. ... | ..+ ..++.++..
T Consensus 489 l~~l~~~~l~~~~~lp~i~~d~~~~m~ide~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (1320)
T PLN03188 489 LNLLKSFGLGPPPSLPHVDEDGDEEMEIDEEAVERLCVQVGLQPAGAAEGNNVDMGRVESIHSSDQQSIIKQGSEDTDVD 568 (1320)
T ss_pred HHHHHhccCCCCcCCCccccccchhhhcchhHHHHHHHHhcccchhHHHHHHHhhhcccccccccchhhhcccccccchh
Confidence 0 000 0 000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 000113 558 -------------------------------------------------------------------------------- 557 (2159)
Q Consensus 558 -------------------------------------------------------------------------------- 557 (2159)
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (1320)
T PLN03188 569 MEEAISEQEEKHEITIVDCAEPVRNTQNSLQIDTLDHESSEQPLEEKNALHSSVSKLNTEESPSKMVEIRPSCQDSVSES 648 (1320)
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCccccccccc
Confidence
Q ss_pred -------------------------------cc--------C--------------------------------------
Q 000113 558 -------------------------------KY--------S-------------------------------------- 560 (2159)
Q Consensus 558 -------------------------------~~--------~-------------------------------------- 560 (2159)
.+ +
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lsi~p~~~~~~l~~p~~s~sp~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1320)
T PLN03188 649 GVSTGVSVADESNDSENELVNCASPSSLSIVPVEVSPVLKSPTLSVSPRIRNSRKSLRTSSMLTASQKDSEDESKLTPED 728 (1320)
T ss_pred cccccccccccccccccccccCCCccccccccccccccccCCccccCCCcccchhhhhhhcccccccchhcccccccccc
Confidence 00 0
Q ss_pred --------------------------CCCCC----------ccc--------------------------------ccc-
Q 000113 561 --------------------------FPGEG----------MMD--------------------------------NGV- 571 (2159)
Q Consensus 561 --------------------------~~~~~----------~~~--------------------------------~~~- 571 (2159)
.|.+. +++ +++
T Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~t~~laasl~rgl~ii~~h~~~~~~~rss~~~s~~~~~~~~~~~~~k~~~~vq 808 (1320)
T PLN03188 729 AEPSFAKSMKNNSSSALSTQKSKSFLAPTEHLAASLHRGLEIIDSHRQSSALRRSSFRFSFKPADSKPITLVSKADVGVQ 808 (1320)
T ss_pred cccchhhhhhcccccccccccccccCCchHHHHHHHhcchHHHhhcccCchhhccceecccccccccccccccccchhhh
Confidence 00000 000 000
Q ss_pred --------------------------------hh-----------------hhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000113 572 --------------------------------QN-----------------VQNEKTKRLECMLLGSLRREKMAEAVTQK 602 (2159)
Q Consensus 572 --------------------------------~~-----------------~~~~k~k~lE~~L~~alrre~~~E~e~~k 602 (2159)
.+ ....-.+..++.|++++||++..+..|.+
T Consensus 809 ~~~~~~~~~~~~~~~~lc~~c~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~k~~~kvl~~a~~re~~le~~c~~ 888 (1320)
T PLN03188 809 TLPQADEISEENSKEFLCSNCKCRTQLDAKDADDSSNLQLVPVDGSESAEKSKKQVPKAVEKVLAGAIRREMALEEFCTK 888 (1320)
T ss_pred cccccccccccccchhcccccccccccccccccccccceeeeccCcccccchhhhhhhHHHHHHHHHHHHHHHHHHhhHH
Confidence 00 00001456788999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhHHHHHHHHHHHHHHHHHhhhhChHHHHHHHH
Q 000113 603 LEAEIEHMNRLLCQREEDTQHTKMMLRFREEKIKQLELLVNGSVTAEKYLMDENIALKEEIQLLQARIDRNPELTRFALE 682 (2159)
Q Consensus 603 leeeie~ln~Ll~qkee~~q~sk~~lklree~i~~lE~l~s~~l~~E~~L~~En~~lk~Ei~~Lq~~~d~~~Ev~~~~~E 682 (2159)
..++|++|++||+|++++.+++..+-..|+++|.|||.+.+|.++.|.++.+|..+|..|.+.|+.+|++||||.+..+|
T Consensus 889 qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~~ki~~l~~~~dg~l~~~~~~~~~~~~~~~~~~~~~~~y~~~p~~~~~~~e 968 (1320)
T PLN03188 889 QASEITQLNRLVQQYKHERECNAIIGQTREDKIIRLESLMDGVLSKEDFLEEELASLMHEHKLLKEKYENHPEVLRTKIE 968 (1320)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhHHHHhhhcccccchhhhhhhhhhhhhhhHHHHHHHhhcChhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccc
Q 000113 683 NIRLLEQLQLFQSFYEQGEREKLLAELAELRDQLLDIVEGKE 724 (2159)
Q Consensus 683 n~~L~eel~~~~~f~~~gere~l~~ei~~Lr~ql~~~~~~~~ 724 (2159)
++++++++.+|++|||+||||+||+||+.||+||.++++.-+
T Consensus 969 ~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~~d~s~ 1010 (1320)
T PLN03188 969 LKRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYYIDSSL 1010 (1320)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999977664
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-94 Score=902.85 Aligned_cols=503 Identities=35% Similarity=0.510 Sum_probs=401.9
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCce-EEEcCC-----CCceeEeceecCCCCChHHHHHhhchhHHHHhh
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQT-LVWLGH-----PETRFTFDHIACEMISQEKLFRVAGLPMVENCL 232 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~t-iv~~g~-----p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vL 232 (2159)
.+.||+|+|||||++..|....... ++..++... +.+.+. ..++|+||+||||.+.|++||+.++.|+|..|+
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~-VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSV-VVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCe-EEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHh
Confidence 4789999999999999998665443 444444222 332221 245799999999999999999999999999999
Q ss_pred cCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccc
Q 000113 233 SGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITD 312 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~D 312 (2159)
.|||||||||||||+||||||+|+.....|..++++|||||++.+||+.+.. .+.+|+|+|||+|+|||.|+|
T Consensus 126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~-------~~~EYsvKVSfLELYNEEl~D 198 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEA-------QGAEYSVKVSFLELYNEELTD 198 (1041)
T ss_pred ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHh-------cCCeEEEEEEehhhhhHHHHH
Confidence 9999999999999999999999998888899999999999999999998742 347899999999999999999
Q ss_pred cCCCCCC---Cceeee-----cCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeee
Q 000113 313 LLEPSST---NLQLRE-----DLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHW 384 (2159)
Q Consensus 313 LL~p~s~---~L~IrE-----D~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~ 384 (2159)
||+|... .+.+.+ |.++||+|+||.+++|+++.|++.+|.+|...|+||+|.||..|||||+||+|+|..+.
T Consensus 199 LLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike 278 (1041)
T KOG0243|consen 199 LLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKE 278 (1041)
T ss_pred hcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEec
Confidence 9998654 344444 45789999999999999999999999999999999999999999999999999997654
Q ss_pred cC-CCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhh
Q 000113 385 EK-DSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDS 463 (2159)
Q Consensus 385 ~~-~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDS 463 (2159)
.. .+..-+++|||+||||||||.+.++|+.+.|.+||+.||+||+|||+||+||++. ..|||||+||||||||||
T Consensus 279 ~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~----s~HIPYRESKLTRLLQDS 354 (1041)
T KOG0243|consen 279 NTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH----SGHIPYRESKLTRLLQDS 354 (1041)
T ss_pred CCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc----CCCCCchHHHHHHHHHHH
Confidence 33 2334478899999999999999999999999999999999999999999999985 369999999999999999
Q ss_pred cCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccccccCcccc--HHHHHHHHHHHHHHHHHHHHhcCccCCCC
Q 000113 464 LGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGD--VTALQRQIQQLKDKLSSLMKHQNLLRSPS 541 (2159)
Q Consensus 464 LGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~~--v~~L~~eIq~LK~eL~~l~~~~~~~~s~~ 541 (2159)
|||.+||+|||||||+..+++||+|||.||.|||+|+|+|.+|.....+ +.+|..+|.+||..|.+.+..+|++.+..
T Consensus 355 LGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee 434 (1041)
T KOG0243|consen 355 LGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEE 434 (1041)
T ss_pred hCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechH
Confidence 9999999999999999999999999999999999999999999876554 67999999999999999999999886431
Q ss_pred CCCCcCCCCCccccccccCCCCCCcccccchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 000113 542 SSTPEVGESSQGDIIKKYSFPGEGMMDNGVQNVQNEKTKRLECMLLGSLRREKMAEAVTQKLEAEIEHMNRLLCQREEDT 621 (2159)
Q Consensus 542 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~lE~~L~~alrre~~~E~e~~kleeeie~ln~Ll~qkee~~ 621 (2159)
. .. ......+.+....+... ......+++++.+...+.....--.....++.+++..+...++-+...++++
T Consensus 435 ~-----y~-~~e~e~~~~~~~ieele--~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~ 506 (1041)
T KOG0243|consen 435 R-----YT-QEEKEKKEMAEQIEELE--EELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEEL 506 (1041)
T ss_pred H-----HH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 00000000000000000 0000111223333333322222223445566777778888888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChhhhHHHHHHHHHHHHHHHHHhhhhChHHHHHHH
Q 000113 622 QHTKMMLRFREEKIKQLELLVNGSVTAEKYLMDENIALKEEIQLLQARIDRNPELTRFAL 681 (2159)
Q Consensus 622 q~sk~~lklree~i~~lE~l~s~~l~~E~~L~~En~~lk~Ei~~Lq~~~d~~~Ev~~~~~ 681 (2159)
++++..++..+..|.+++.......+....|+..++..+..+..|..++|+...+.+-..
T Consensus 507 ~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~ 566 (1041)
T KOG0243|consen 507 QQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQ 566 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccH
Confidence 999999998888888888776555566677888888888888888887766555444333
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-93 Score=871.07 Aligned_cols=359 Identities=52% Similarity=0.731 Sum_probs=327.5
Q ss_pred CCCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCCC-------CceeEeceecCCCCChHHHHHhhchhHHHH
Q 000113 158 WKDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHP-------ETRFTFDHIACEMISQEKLFRVAGLPMVEN 230 (2159)
Q Consensus 158 ~~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~p-------~~~FtFD~VFde~aSQEeVFe~v~~PLV~~ 230 (2159)
+..++|+|+||+||++..+. ..+...++.++.....+++++| .+.|+||+||+++++|++||+.+++|+|++
T Consensus 2 ~~~~~v~vvvr~rPl~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~s 80 (574)
T KOG4280|consen 2 SPACKVKVVVRVRPLSAAER-SELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVES 80 (574)
T ss_pred CcccceeEEEeecCCCchhh-hhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHH
Confidence 35788999999999998665 4566677777777766666543 357999999999999999999999999999
Q ss_pred hhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccc
Q 000113 231 CLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQI 310 (2159)
Q Consensus 231 vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI 310 (2159)
||+||||||||||||||||||||+|+. ++.+|||||+|.+||.+|...+ ....|.|+|||+|||||.|
T Consensus 81 vl~GyNgtvFaYGQTGsGKTyTM~G~~-------~~~~GiiPraf~~LF~~I~~~~-----~~~~f~vrvS~lEiYnE~i 148 (574)
T KOG4280|consen 81 VLEGYNGTVFAYGQTGSGKTYTMIGPD-------PELRGLIPRAFEHLFRHIDERK-----EKTRFLVRVSYLEIYNESI 148 (574)
T ss_pred HhcccCceEEEeccCCCCCceEeeCCC-------hhhCCchhHHHHHHHHHHHhcc-----ccceEEEEeehHHHHhHHH
Confidence 999999999999999999999999981 5688999999999999996532 2238999999999999999
Q ss_pred cccCCCCC-CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEe-eecCCC
Q 000113 311 TDLLEPSS-TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIES-HWEKDS 388 (2159)
Q Consensus 311 ~DLL~p~s-~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~-~~~~~~ 388 (2159)
+|||+|.+ ..+.++++++.||||+||+++.|.|+++++.+|..|++||++++|.||..|||||+||||+|++ ....++
T Consensus 149 ~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~ 228 (574)
T KOG4280|consen 149 RDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGG 228 (574)
T ss_pred HHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCC
Confidence 99999987 5899999999999999999999999999999999999999999999999999999999999998 333456
Q ss_pred ccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCc
Q 000113 389 MTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNS 468 (2159)
Q Consensus 389 ~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNS 468 (2159)
....+.|||+|||||||||++++|++|+|++||++||+||++||+||+||++. ++.||||||||||+||||||||||
T Consensus 229 ~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~---~~~HIPYRdSkLT~LLqdSLGGN~ 305 (574)
T KOG4280|consen 229 LMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDG---SKTHIPYRDSKLTRLLQDSLGGNS 305 (574)
T ss_pred ccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcc---ccCCCCcchhHHHHHHHHHcCCCc
Confidence 66788999999999999999999999999999999999999999999999874 345999999999999999999999
Q ss_pred cEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccccccCcc-ccHHHHHHHHHHHHHHHHHHHH
Q 000113 469 KTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENAS-GDVTALQRQIQQLKDKLSSLMK 532 (2159)
Q Consensus 469 KT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s-~~v~~L~~eIq~LK~eL~~l~~ 532 (2159)
||+|||||||+..+++||++||+||+|||.|+|+|+||+++. +.+..|+.+|+.||.+|.....
T Consensus 306 kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 306 KTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPGGS 370 (574)
T ss_pred eEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhccccC
Confidence 999999999999999999999999999999999999999998 7789999999999999965533
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=9.6e-91 Score=826.54 Aligned_cols=510 Identities=37% Similarity=0.549 Sum_probs=396.7
Q ss_pred CCCceEEEEEeCCCCChhcccCC-ceeEEecCCCceEEEcC-CCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCC
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQG-YVRCLKQDTAQTLVWLG-HPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYN 236 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g-~~~cv~~~s~~tiv~~g-~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN 236 (2159)
..++|+|+||+||++..|....+ +..|+... ..++++.+ +-...|.||+||+|++||++||..++.|+|++||.|||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~-~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYN 83 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENG-ENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYN 83 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCC-cceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 47899999999999998865433 33344332 44444433 23367999999999999999999999999999999999
Q ss_pred ceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCC
Q 000113 237 SCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEP 316 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p 316 (2159)
|||||||||||||||||.|...+ +...|||||++++||.+|.. .+.+..|+|+|||||||+|+|+|||+|
T Consensus 84 GTvfaYGqT~sGKTytm~G~~~d-----~~~~GIipRi~~diF~~Iys-----~~~n~efhVkVsy~EIYmEKi~DLL~~ 153 (607)
T KOG0240|consen 84 GTVFAYGQTGSGKTYTMEGIGHD-----PEEMGIIPRILNDIFDHIYS-----MEENLEFHVKVSYFEIYMEKIRDLLDP 153 (607)
T ss_pred eeEEEecCCCCCcceeecccCCC-----hhhcCcHHHHHHHHHHHHhc-----CcccceEEEEEEeehhhhhHHHHHhCc
Confidence 99999999999999999997542 34679999999999999964 456689999999999999999999999
Q ss_pred CCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccceeEeE
Q 000113 317 SSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFAR 396 (2159)
Q Consensus 317 ~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r~SK 396 (2159)
.+.++.+++|...++||+|++++.|.++++++++++.|..||++|.|+||.+|||||+||+|+|.+.... ....+.||
T Consensus 154 ~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e--~~~~~~gk 231 (607)
T KOG0240|consen 154 EKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVE--DKRKLSGK 231 (607)
T ss_pred ccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEecccc--chhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999886433 34467899
Q ss_pred eEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEee
Q 000113 397 LNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANV 476 (2159)
Q Consensus 397 L~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~V 476 (2159)
|+||||||||++.++|+.|..+.||++||+||+|||+||+||++ |+..|||||||||||||||||||||||++|+||
T Consensus 232 LyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~---g~~shipYRDSKLTRILqdSLGGNsRTtlIi~c 308 (607)
T KOG0240|consen 232 LYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAE---GPKSHIPYRDSKLTRILQDSLGGNSRTTLIICC 308 (607)
T ss_pred EEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhc---CCCCCCcchhhHHHHHHHHHhCCCcceEEEEec
Confidence 99999999999999999999999999999999999999999986 557899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccccccccccCcccc--HHHHHH----------HHHHHHHHHHHHHHhcCccCCCCCCC
Q 000113 477 SPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGD--VTALQR----------QIQQLKDKLSSLMKHQNLLRSPSSST 544 (2159)
Q Consensus 477 SPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~~--v~~L~~----------eIq~LK~eL~~l~~~~~~~~s~~~~~ 544 (2159)
||+..+..||.+||+|++|||.|+|.+.+|...+.+ ...|.. .++.+...|.+|+.+..++.
T Consensus 309 sPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~------ 382 (607)
T KOG0240|consen 309 SPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKE------ 382 (607)
T ss_pred CCccccccccccchhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccc------
Confidence 999999999999999999999999999999876543 122222 22222233332222211110
Q ss_pred CcCCCCCccccccccCCCCCCcccccchhhhhH-HHHH--HHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhH
Q 000113 545 PEVGESSQGDIIKKYSFPGEGMMDNGVQNVQNE-KTKR--LECMLLGSLRREK-MAEAVTQKLEAEIEHMNRLLCQREED 620 (2159)
Q Consensus 545 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~k~--lE~~L~~alrre~-~~E~e~~kleeeie~ln~Ll~qkee~ 620 (2159)
.. ...+... +... .+.. ..+.... ..+.....+++++.+|++++++++.+
T Consensus 383 -------------------de-----~~~~~~~~k~~~~~~~~~--~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~ 436 (607)
T KOG0240|consen 383 -------------------DE-----DFSLKEEAKMSAILSEEE--MSITKLKGSLEEEEDILTERIESLYQQLDQKDDQ 436 (607)
T ss_pred -------------------hh-----hhhHHHHHHhhhhhhhhh--hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000 0000 0000 0111111 14567788999999999999999866
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhcCCCChhh------hHHHHHHHHHHHHHH-HHH------hhh-hChHHHHHHHHHHH
Q 000113 621 -TQHTKMMLRFREEKIKQLELLVNGSVTAEK------YLMDENIALKEEIQL-LQA------RID-RNPELTRFALENIR 685 (2159)
Q Consensus 621 -~q~sk~~lklree~i~~lE~l~s~~l~~E~------~L~~En~~lk~Ei~~-Lq~------~~d-~~~Ev~~~~~En~~ 685 (2159)
.++++...+++.++.++.|.+.+++..++. +++++++..+.+++. +++ .++ ...++....-.|
T Consensus 437 ~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n-- 514 (607)
T KOG0240|consen 437 INKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQN-- 514 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhh--
Confidence 588999999999999999999988887775 577777777777644 332 233 333444333333
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 000113 686 LLEQLQLFQSFYEQGEREKLLAELAELRDQLLDI 719 (2159)
Q Consensus 686 L~eel~~~~~f~~~gere~l~~ei~~Lr~ql~~~ 719 (2159)
+..+|..+++-.. +.+....+=+..|+.+|-.+
T Consensus 515 ~~sel~sl~~~~~-~~~~r~~~~~~~l~~~~~~~ 547 (607)
T KOG0240|consen 515 LKSELQSLQEPSE-HQSKRITELLSELRKDLGEI 547 (607)
T ss_pred hHHHHHhhhhccc-chhHHHHHHHHHHHhhhccc
Confidence 5666666665543 34555555555566665443
No 5
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-91 Score=858.36 Aligned_cols=356 Identities=44% Similarity=0.697 Sum_probs=314.5
Q ss_pred CCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCCC----CceeEeceecCC-------CCChHHHHHhhchhHH
Q 000113 160 DHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHP----ETRFTFDHIACE-------MISQEKLFRVAGLPMV 228 (2159)
Q Consensus 160 d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~p----~~~FtFD~VFde-------~aSQEeVFe~v~~PLV 228 (2159)
..+|+|+||||||+..|... ...|+..-...++.++.++ ..+|+||++|+. .++|..||+.+|.|++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~--~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSR--DAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CCceEEEEEeccchhhhhhc--ccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 45799999999999999765 3445544333333333322 346999999875 4899999999999999
Q ss_pred HHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecc
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNE 308 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNE 308 (2159)
+++|+|||+||||||||||||||||+|.. .++++|||||+|++||++|... ....+.|+|.|||+|||||
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~------~~~e~GIIPrlCEeLF~ri~~n----q~~~~sy~VevSymEIYcE 150 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQ------EPDEPGIIPRLCEELFSRIADN----QSQQMSYSVEVSYMEIYCE 150 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccC------CCCCCCchhHHHHHHHHHHhhc----ccccceEEEEEeehhHHHH
Confidence 99999999999999999999999999973 2578999999999999999643 4556899999999999999
Q ss_pred cccccCC-C-CCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecC
Q 000113 309 QITDLLE-P-SSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEK 386 (2159)
Q Consensus 309 kI~DLL~-p-~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~ 386 (2159)
+|+|||+ | .+++|+|||+|..|+||.+|+.+.|+|+.|+..+|..|++.|++|+|+||+.|||||+||||.+.++...
T Consensus 151 rVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~ 230 (1221)
T KOG0245|consen 151 RVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHD 230 (1221)
T ss_pred HHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeecc
Confidence 9999998 5 4568999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred --CCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcC---CCCCCccCCcchhhHHhh
Q 000113 387 --DSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQ---GKHRHVPYRDSRLTFLLQ 461 (2159)
Q Consensus 387 --~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~---~K~~HVPYRDSKLTrLLQ 461 (2159)
.+.+..++|||+|||||||||+..+|+.|+|+|||.+|||||.|||+||+||++.++ ++..+||||||.|||||+
T Consensus 231 ~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLk 310 (1221)
T KOG0245|consen 231 QDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLK 310 (1221)
T ss_pred ccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHH
Confidence 334567889999999999999999999999999999999999999999999999875 445699999999999999
Q ss_pred hhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccccccCcccc-HHHHHHHHHHHHHHH
Q 000113 462 DSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGD-VTALQRQIQQLKDKL 527 (2159)
Q Consensus 462 DSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~~-v~~L~~eIq~LK~eL 527 (2159)
++|||||||+|||++||+..||+|||||||||.|||.|+|+|+||+++.+. ++.|+.+|.+||..+
T Consensus 311 EnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll 377 (1221)
T KOG0245|consen 311 ENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLL 377 (1221)
T ss_pred HhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875 456777777666554
No 6
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.2e-84 Score=764.39 Aligned_cols=337 Identities=66% Similarity=0.973 Sum_probs=309.3
Q ss_pred CceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCCCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeE
Q 000113 161 HNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMF 240 (2159)
Q Consensus 161 ~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIF 240 (2159)
+||+|+|||||+++.|. ..+...|+...+++++++.++|...|.||+||+++++|++||+.++.|+|+++++|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~-~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEA-DGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhc-ccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 47999999999998886 34566788877778888888888899999999999999999999999999999999999999
Q ss_pred eecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCCCCCC
Q 000113 241 AYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTN 320 (2159)
Q Consensus 241 AYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p~s~~ 320 (2159)
|||||||||||||+|+..........++|||||++++||..+....+. ......|.|+|||+|||||+|||||+|....
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~-~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~ 158 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEK-RGDGLKFLCKCSFLEIYNEQITDLLDPTSRN 158 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhh-cccCceEEEEEEEEeecCCEeeeCCCCCCCC
Confidence 999999999999999865443334567899999999999998754433 2356789999999999999999999999889
Q ss_pred ceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccceeEeEeEee
Q 000113 321 LQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLNLV 400 (2159)
Q Consensus 321 L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r~SKL~LV 400 (2159)
+.+++++.+|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+..........+.|+|+||
T Consensus 159 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~V 238 (337)
T cd01373 159 LKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLV 238 (337)
T ss_pred ceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999988766555556778999999
Q ss_pred eccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEeeCCCC
Q 000113 401 DLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSM 480 (2159)
Q Consensus 401 DLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~VSPs~ 480 (2159)
|||||||.+++++.|.+++|+++||+||++||+||.+|++...++..||||||||||+||+|+|||||+|+|||||||+.
T Consensus 239 DLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~ 318 (337)
T cd01373 239 DLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSS 318 (337)
T ss_pred ECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCc
Confidence 99999999999999999999999999999999999999987667789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcc
Q 000113 481 CSANETLSTLKFAQRAKLI 499 (2159)
Q Consensus 481 ~n~eETLSTLrFAqRAK~I 499 (2159)
.+++||++||+||+|||.|
T Consensus 319 ~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 319 KCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999987
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.6e-82 Score=759.03 Aligned_cols=356 Identities=45% Similarity=0.724 Sum_probs=319.0
Q ss_pred CCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcC---------CCCceeEeceecCCC-------CChHHHHHhh
Q 000113 160 DHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLG---------HPETRFTFDHIACEM-------ISQEKLFRVA 223 (2159)
Q Consensus 160 d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g---------~p~~~FtFD~VFde~-------aSQEeVFe~v 223 (2159)
+.+|+|+|||||++.+|..- ....++.++..++++... ++.++|+||++|.+. ++|+.||..+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l-~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~l 81 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELEL-STKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCL 81 (1714)
T ss_pred CcceEEEEEecccchhhhcc-cccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhc
Confidence 67899999999999988632 233344566666665443 234679999999974 8999999999
Q ss_pred chhHHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeee
Q 000113 224 GLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFL 303 (2159)
Q Consensus 224 ~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSfl 303 (2159)
|..+|+++|+|||+||||||||||||||||+|. .+.+|||||+|..||.+|+.. ......|.|.|||+
T Consensus 82 G~~il~naf~GyNaCifaYGQtGsGKsYsmmGt--------~~QpGiIPrlc~~lFe~I~k~----~n~~~tfkVeVSym 149 (1714)
T KOG0241|consen 82 GEGILENAFQGYNACIFAYGQTGSGKSYSMMGT--------AEQPGIIPRLCESLFERIDKE----SNPSQTFKVEVSYM 149 (1714)
T ss_pred chHHHHHHhhccceeeEEecccCCCceeEeecc--------CCCCCchhHHHHHHHHHHHhc----cCCCceEEEEEEHH
Confidence 999999999999999999999999999999997 567899999999999999753 36778999999999
Q ss_pred eeecccccccCCCCC--CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEE
Q 000113 304 EIYNEQITDLLEPSS--TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIE 381 (2159)
Q Consensus 304 EIYNEkI~DLL~p~s--~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie 381 (2159)
|||||++||||+|.. ..|.+|++.-.|+||.||++..|+|++|+-.+|..|+++|++++|+||..|||||+||.+.|.
T Consensus 150 EIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvt 229 (1714)
T KOG0241|consen 150 EIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVT 229 (1714)
T ss_pred HHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEe
Confidence 999999999999864 569999999999999999999999999999999999999999999999999999999999998
Q ss_pred eee--cCCCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCC--CCCccCCcchhh
Q 000113 382 SHW--EKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGK--HRHVPYRDSRLT 457 (2159)
Q Consensus 382 ~~~--~~~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K--~~HVPYRDSKLT 457 (2159)
++- ...+....+.|||.|||||||||+.++|+.|.|++||+|||+||++||.||.||++...|+ .++||||||.||
T Consensus 230 Q~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLT 309 (1714)
T KOG0241|consen 230 QTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLT 309 (1714)
T ss_pred eEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHH
Confidence 864 3445566788999999999999999999999999999999999999999999999976555 789999999999
Q ss_pred HHhhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccccccCccccH-HHHHHHHHHHHHHHH
Q 000113 458 FLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGDV-TALQRQIQQLKDKLS 528 (2159)
Q Consensus 458 rLLQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~~v-~~L~~eIq~LK~eL~ 528 (2159)
|||+|+|||||+|+||+||||++++|+||+||||||.|||.|+|.++||+++.+.+ +.|+.++..|+..|.
T Consensus 310 wLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~ 381 (1714)
T KOG0241|consen 310 WLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLE 381 (1714)
T ss_pred HHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998764 456777777766664
No 8
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-82 Score=797.32 Aligned_cols=354 Identities=44% Similarity=0.659 Sum_probs=311.5
Q ss_pred CCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCCC-------CceeEeceecCCCCChHHHHHhhchhHHHHhh
Q 000113 160 DHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHP-------ETRFTFDHIACEMISQEKLFRVAGLPMVENCL 232 (2159)
Q Consensus 160 d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~p-------~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vL 232 (2159)
..+|.|+|||||+++.+... +....+....+..++....+ ...|.||+||+++++|++||+..++|+|.+|+
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l 83 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDAR-GDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVL 83 (675)
T ss_pred cceeEEEEEeCCCCcccccc-CCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHh
Confidence 56899999999999874322 22222222222222222211 26799999999999999999999999999999
Q ss_pred cCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccc
Q 000113 233 SGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITD 312 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~D 312 (2159)
.||||||||||||||||||||.|. .++|||||+++.+||..|.... ...|.|+|||+|||||.|||
T Consensus 84 ~G~N~TVFAYG~TgSGKTyTM~G~--------~~~PGii~la~~dif~~I~~~~------~r~f~v~vSYlEIYNE~I~D 149 (675)
T KOG0242|consen 84 EGFNATVFAYGQTGSGKTYTMSGS--------EDDPGIIPLAMKDIFEKIDKSG------EREFSVRVSYLEIYNERIRD 149 (675)
T ss_pred cCcccceeeecCCCCCCceEEecc--------CCCCCeeehHHHHHHHHHHhcC------CceeEEEEEEEEEecccccc
Confidence 999999999999999999999997 5679999999999999996432 56899999999999999999
Q ss_pred cCCCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccce
Q 000113 313 LLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHF 392 (2159)
Q Consensus 313 LL~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~ 392 (2159)
||+|...+|.+++|+.+|++|.||+++.|.|++++..+|..|..+|+++.|.+|..|||||+||+|.|.++..... .
T Consensus 150 LL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-~-- 226 (675)
T KOG0242|consen 150 LLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-S-- 226 (675)
T ss_pred ccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-c--
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765444 2
Q ss_pred eEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEE
Q 000113 393 RFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTI 472 (2159)
Q Consensus 393 r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~M 472 (2159)
+.|+|+|||||||||+.+|++.|.|++||++||+||++||+||++|+++. ...||||||||||||||+||||||+|+|
T Consensus 227 ~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~--~~~hipYRDSKLTRiLq~sLgGn~rt~~ 304 (675)
T KOG0242|consen 227 RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGK--RPRHIPYRDSKLTRLLQDSLGGNARTAI 304 (675)
T ss_pred hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHcccc--ccCCCCccccHHHHhchhhcCCCccEEE
Confidence 67999999999999999999999999999999999999999999997632 3459999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhhccccccccccCccc--cHHHHHHHHHHHHHHHHHHHHh
Q 000113 473 IANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASG--DVTALQRQIQQLKDKLSSLMKH 533 (2159)
Q Consensus 473 Ia~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~--~v~~L~~eIq~LK~eL~~l~~~ 533 (2159)
||||+|+..+|+||.+||+||+|||.|++++.+|..... .+..++++|..|+.++..++..
T Consensus 305 I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~ 367 (675)
T KOG0242|consen 305 IATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKK 367 (675)
T ss_pred EEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999976543 3456678999999998776443
No 9
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.6e-80 Score=729.91 Aligned_cols=323 Identities=44% Similarity=0.682 Sum_probs=292.5
Q ss_pred ceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC--------------CCceeEeceecCCCCChHHHHHhhchhH
Q 000113 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH--------------PETRFTFDHIACEMISQEKLFRVAGLPM 227 (2159)
Q Consensus 162 nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~--------------p~~~FtFD~VFde~aSQEeVFe~v~~PL 227 (2159)
||+|+|||||+++.|.. .+...|+.+.+...+++... ....|+||+||+++++|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~E~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQ-EGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhh-cCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHH
Confidence 69999999999998853 45567777766665554321 1357999999999999999999999999
Q ss_pred HHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeec
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYN 307 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYN 307 (2159)
|+++++|||+||||||||||||||||+|+ +.++|||||++++||..+... ...+.|.|+|||+||||
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~--------~~~~Giipr~~~~LF~~i~~~-----~~~~~~~v~vS~~EIyn 146 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGT--------DSDPGLMVLTMKDLFDKIEER-----KDDKEFEVSLSYLEIYN 146 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCC--------CCCCchHHHHHHHHHHhhhhc-----ccCceEEEEEEEEEEEC
Confidence 99999999999999999999999999997 357899999999999998642 24678999999999999
Q ss_pred ccccccCCCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCC
Q 000113 308 EQITDLLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKD 387 (2159)
Q Consensus 308 EkI~DLL~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~ 387 (2159)
|+|+|||++....+.+++|+.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.....
T Consensus 147 e~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~ 226 (338)
T cd01370 147 ETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTA 226 (338)
T ss_pred CEEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCC
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999998875432
Q ss_pred -CccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCC
Q 000113 388 -SMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGG 466 (2159)
Q Consensus 388 -~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGG 466 (2159)
.......|+|+|||||||||.+++++.|.+++|+++||+||++||+||.+|+.... +..||||||||||+||+|+|||
T Consensus 227 ~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~-~~~~ipyR~SkLT~lL~d~Lgg 305 (338)
T cd01370 227 SINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK-KNKHIPYRDSKLTRLLKDSLGG 305 (338)
T ss_pred CCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC-CCCcCCCcCCHHHHHHHHhcCC
Confidence 23446779999999999999999999999999999999999999999999987543 4589999999999999999999
Q ss_pred CccEEEEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q 000113 467 NSKTTIIANVSPSMCSANETLSTLKFAQRAKLI 499 (2159)
Q Consensus 467 NSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~I 499 (2159)
||+|+||+||||+..+++||++||+||+|||.|
T Consensus 306 n~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 306 NCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999987
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.7e-78 Score=714.67 Aligned_cols=316 Identities=41% Similarity=0.611 Sum_probs=284.5
Q ss_pred ceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC--------------CCceeEeceecCCCCChHHHHHhhchhH
Q 000113 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH--------------PETRFTFDHIACEMISQEKLFRVAGLPM 227 (2159)
Q Consensus 162 nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~--------------p~~~FtFD~VFde~aSQEeVFe~v~~PL 227 (2159)
+|+|+|||||+++.|.. .+...|+.+.+..++++..+ ....|.||+||+++++|++||+.++.|+
T Consensus 2 ~i~V~vRvRP~~~~E~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 2 PVKVYLRVRPLSKDELE-SEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CEEEEEEeCcCCchhhc-cCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 69999999999998763 34556776666665554321 2346999999999999999999999999
Q ss_pred HHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeec
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYN 307 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYN 307 (2159)
|+++++|||+||||||||||||||||+|+ +.++|||||++++||..+.. |.|+|||+||||
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~--------~~~~Gli~r~~~~lF~~~~~-----------~~v~~S~~EIyn 141 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGS--------PGDGGILPRSLDVIFNSIGG-----------YSVFVSYVEIYN 141 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCC--------CCCCchHHHHHHHHHHHHHh-----------eeEEEEEEEEeC
Confidence 99999999999999999999999999997 36789999999999998742 999999999999
Q ss_pred ccccccCCCCCC------CceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEE
Q 000113 308 EQITDLLEPSST------NLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIE 381 (2159)
Q Consensus 308 EkI~DLL~p~s~------~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie 381 (2159)
|+|||||+|... .+.+++|++++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.
T Consensus 142 e~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~ 221 (345)
T cd01368 142 NYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLV 221 (345)
T ss_pred CEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEE
Confidence 999999987553 68999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeecCC------CccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCC--CCCCccCCc
Q 000113 382 SHWEKD------SMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQG--KHRHVPYRD 453 (2159)
Q Consensus 382 ~~~~~~------~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~--K~~HVPYRD 453 (2159)
+..... .......|+|+|||||||||..++++.|.+++|+++||+||++||+||.+|++.... +..||||||
T Consensus 222 ~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~ 301 (345)
T cd01368 222 QAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRD 301 (345)
T ss_pred EeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcC
Confidence 765432 123456799999999999999999999999999999999999999999999875432 578999999
Q ss_pred chhhHHhhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhh
Q 000113 454 SRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAK 497 (2159)
Q Consensus 454 SKLTrLLQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK 497 (2159)
||||+||+|+|||||+|+||+||||+..+++||++||+||.||+
T Consensus 302 SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 302 SKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=7.6e-78 Score=710.94 Aligned_cols=332 Identities=46% Similarity=0.716 Sum_probs=297.6
Q ss_pred CceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC--------CCceeEeceecCCC-------CChHHHHHhhch
Q 000113 161 HNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH--------PETRFTFDHIACEM-------ISQEKLFRVAGL 225 (2159)
Q Consensus 161 ~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~--------p~~~FtFD~VFde~-------aSQEeVFe~v~~ 225 (2159)
.||+|+|||||++..|... +...|+.+++. .+.+..+ ....|.||+||++. ++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~-~~~~~~~~~~~-~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNR-GSKCIVQMPGK-VTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhcc-CCceEEEECCC-EEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 4799999999999988653 44566776663 3333322 23579999999999 999999999999
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeee
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEI 305 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEI 305 (2159)
|+|+++++|||+||||||||||||||||+|+ ..++|||||++++||..+.... .....|.|+|||+||
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~--------~~~~Gli~r~~~~Lf~~~~~~~----~~~~~~~v~~S~~EI 146 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGY--------KEEKGIIPRLCEELFQRIESKK----EQNLSYEVEVSYMEI 146 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCC--------CCCCchHHHHHHHHHHHHhhcc----ccCceEEEEEEEEEE
Confidence 9999999999999999999999999999997 3478999999999999986432 235789999999999
Q ss_pred ecccccccCCCCC---CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEe
Q 000113 306 YNEQITDLLEPSS---TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIES 382 (2159)
Q Consensus 306 YNEkI~DLL~p~s---~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~ 382 (2159)
|||+|||||++.. ..+.+++++.+|++|+|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|.|.+
T Consensus 147 y~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~ 226 (356)
T cd01365 147 YNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQ 226 (356)
T ss_pred ECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEE
Confidence 9999999999874 6799999999999999999999999999999999999999999999999999999999999987
Q ss_pred eecCC--CccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcC----CCCCCccCCcchh
Q 000113 383 HWEKD--SMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQ----GKHRHVPYRDSRL 456 (2159)
Q Consensus 383 ~~~~~--~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~----~K~~HVPYRDSKL 456 (2159)
..... .......|+|+|||||||||..+++..|.+++|+.+||+||++||+||.+|+.... +++.|||||||||
T Consensus 227 ~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkL 306 (356)
T cd01365 227 KKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVL 306 (356)
T ss_pred EecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHH
Confidence 65432 24456789999999999999999999999999999999999999999999987543 3578999999999
Q ss_pred hHHhhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccccc
Q 000113 457 TFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVN 506 (2159)
Q Consensus 457 TrLLQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VN 506 (2159)
|+||+|+|||||+|+||+||||+..+++||++||+||+|||.|+|.|++|
T Consensus 307 T~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 307 TWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred HHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999999999999999999999999987
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=3.5e-77 Score=703.74 Aligned_cols=336 Identities=42% Similarity=0.653 Sum_probs=297.6
Q ss_pred CceEEEEEeCCCCChhcccCCceeEEecCCC-ceEEEcCC-----CCceeEeceecCCCCChHHHHHhhchhHHHHhhcC
Q 000113 161 HNVQVLIRIRPLSNIEKVSQGYVRCLKQDTA-QTLVWLGH-----PETRFTFDHIACEMISQEKLFRVAGLPMVENCLSG 234 (2159)
Q Consensus 161 ~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~-~tiv~~g~-----p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeG 234 (2159)
.||+|+|||||+...|.... ...++.+... ..+.+... ....|.||+||+++++|++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~-~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEK-SSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccC-CCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 58999999999999886433 3445555444 44444333 24679999999999999999999999999999999
Q ss_pred CCceeEeecccCCCcceeeccccccccC---CCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeeccccc
Q 000113 235 YNSCMFAYGQTGSGKTYTMMGEINEVEG---KLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQIT 311 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYTM~G~~~~~~g---~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~ 311 (2159)
||+||||||||||||||||+|+.....+ ..++.+|||||++.+||.++... ...|.|+|||+|||||+||
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-------~~~~~v~~S~~EIy~e~v~ 153 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-------NTEYSVKVSYLELYNEELF 153 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-------cceeEEEEEEEEeeCCeee
Confidence 9999999999999999999998654322 33567899999999999998532 5679999999999999999
Q ss_pred ccCCCC---CCCceeeec--CCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecC
Q 000113 312 DLLEPS---STNLQLRED--LKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEK 386 (2159)
Q Consensus 312 DLL~p~---s~~L~IrED--~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~ 386 (2159)
|||+|. ...+.++++ ..+|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+....
T Consensus 154 DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~ 233 (352)
T cd01364 154 DLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETT 233 (352)
T ss_pred eCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccC
Confidence 999986 567999999 589999999999999999999999999999999999999999999999999999876543
Q ss_pred -CCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcC
Q 000113 387 -DSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLG 465 (2159)
Q Consensus 387 -~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLG 465 (2159)
.+......|+|+|||||||||..++++.|.+++|++.||+||++||+||.+|+.. ..|||||+||||+||+|+||
T Consensus 234 ~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~----~~~vpyR~S~LT~lL~~~Lg 309 (352)
T cd01364 234 ISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEK----SPHIPYRESKLTRLLQDSLG 309 (352)
T ss_pred CCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcC----CCCCCCcccHHHHHHHHhcC
Confidence 2233356799999999999999999999999999999999999999999999753 47999999999999999999
Q ss_pred CCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccccccC
Q 000113 466 GNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNEN 508 (2159)
Q Consensus 466 GNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed 508 (2159)
|||+|+||+||||+..+++||++||+||+|||.|+|+|.+|.+
T Consensus 310 g~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 310 GRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 9999999999999999999999999999999999999999964
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.5e-75 Score=686.00 Aligned_cols=324 Identities=48% Similarity=0.725 Sum_probs=288.7
Q ss_pred CceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC-------CCceeEeceecCCCCChHHHHHhhchhHHHHhhc
Q 000113 161 HNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH-------PETRFTFDHIACEMISQEKLFRVAGLPMVENCLS 233 (2159)
Q Consensus 161 ~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~-------p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLe 233 (2159)
+||+|+|||||+++.|.. .+...++..++....+.+.. +...|.||+||+++++|++||+.++.|+|+++++
T Consensus 1 ~~i~V~vRvRP~~~~e~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~ 79 (333)
T cd01371 1 ENVKVVVRCRPLNKREKS-EGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLE 79 (333)
T ss_pred CCeEEEEEcCcCChhhhh-cCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhC
Confidence 489999999999988764 34455565544333333322 2456999999999999999999999999999999
Q ss_pred CCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeeccccccc
Q 000113 234 GYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDL 313 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DL 313 (2159)
|||+||||||||||||||||+|+.. .+.++|||||++++||..+... ....|.|+|||+|||||+|+||
T Consensus 80 G~n~~i~ayG~tgSGKTyTm~G~~~-----~~~~~Glipr~~~~Lf~~~~~~------~~~~~~v~~S~~Eiy~e~v~DL 148 (333)
T cd01371 80 GYNGTIFAYGQTGTGKTFTMEGVRE-----PPELRGIIPNSFAHIFGHIAKA------ENVQFLVRVSYLEIYNEEVRDL 148 (333)
T ss_pred CCceeEEecCCCCCCCcEeecCCCC-----cccccchHHHHHHHHHHHHhhc------cCccEEEEEEEEEeeCCeeeeC
Confidence 9999999999999999999999743 2457899999999999988542 2367999999999999999999
Q ss_pred CCCCC-CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCC-Cccc
Q 000113 314 LEPSS-TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKD-SMTH 391 (2159)
Q Consensus 314 L~p~s-~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~-~~t~ 391 (2159)
|++.. ..+.+++++.+|++|.|++++.|.|++++..+|..|.++|++++|.+|..|||||+||+|+|.+.+... +...
T Consensus 149 L~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~ 228 (333)
T cd01371 149 LGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENH 228 (333)
T ss_pred CCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCc
Confidence 99876 579999999999999999999999999999999999999999999999999999999999998775432 3445
Q ss_pred eeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEE
Q 000113 392 FRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTT 471 (2159)
Q Consensus 392 ~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~ 471 (2159)
...|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|++ ++..|||||+||||+||+|+|||||+|+
T Consensus 229 ~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~---~~~~~ipyR~SkLT~lL~~~l~g~s~t~ 305 (333)
T cd01371 229 IRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVD---GKSTHIPYRDSKLTRLLQDSLGGNSKTV 305 (333)
T ss_pred EEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHh---CCCCcCCCccCHHHHHHHHhcCCCceEE
Confidence 6789999999999999999999999999999999999999999999975 4557999999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q 000113 472 IIANVSPSMCSANETLSTLKFAQRAKLI 499 (2159)
Q Consensus 472 MIa~VSPs~~n~eETLSTLrFAqRAK~I 499 (2159)
||+||+|+..+++||++||+||+|||.|
T Consensus 306 ~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 306 MCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred EEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999987
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=8.9e-76 Score=685.50 Aligned_cols=311 Identities=35% Similarity=0.533 Sum_probs=278.8
Q ss_pred CceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC----------CCceeEeceecCCCCChHHHHHhhchhHHHH
Q 000113 161 HNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH----------PETRFTFDHIACEMISQEKLFRVAGLPMVEN 230 (2159)
Q Consensus 161 ~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~----------p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~ 230 (2159)
.+|+|+|||||+.+.|.. .+...++.+++.+++.+... ....|+||+||+++++|++||+.++.|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~ 79 (322)
T cd01367 1 MKITVAVRKRPLNDKELS-KGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPH 79 (322)
T ss_pred CCeEEEEEcCcCChhhhc-cCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHH
Confidence 379999999999998764 33444555555444443211 1357999999999999999999999999999
Q ss_pred hhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccc
Q 000113 231 CLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQI 310 (2159)
Q Consensus 231 vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI 310 (2159)
+++|||+||||||||||||||||+|+ ..++|||||++++||..+... ...|.|++||+|||||+|
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~--------~~~~Glipr~~~~lf~~~~~~-------~~~~~v~~S~~EIy~e~v 144 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGD--------ENQEGLYALAARDIFRLLAQP-------NDDLGVTVSFFEIYGGKL 144 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCc--------CCcCccHHHHHHHHHHHHhcc-------ccccEEEEEEEeeecCch
Confidence 99999999999999999999999997 367899999999999988532 157999999999999999
Q ss_pred cccCCCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCcc
Q 000113 311 TDLLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMT 390 (2159)
Q Consensus 311 ~DLL~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t 390 (2159)
+|||+| ...+.+++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+...
T Consensus 145 ~DLL~~-~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~----- 218 (322)
T cd01367 145 FDLLND-RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL----- 218 (322)
T ss_pred hhhccC-ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-----
Confidence 999998 56799999999999999999999999999999999999999999999999999999999999987643
Q ss_pred ceeEeEeEeeeccCCccccCCc-ChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCcc
Q 000113 391 HFRFARLNLVDLAGSERQKSSG-AEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSK 469 (2159)
Q Consensus 391 ~~r~SKL~LVDLAGSER~kkTg-aeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSK 469 (2159)
....|+|+|||||||||...++ ..|.+++|+++||+||++||+||.+|+.. +.||||||||||+||+|+|||||+
T Consensus 219 ~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~----~~~iPyRdSkLT~lL~~~L~g~~~ 294 (322)
T cd01367 219 NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASN----KAHVPFRGSKLTQVLRDSFIGNSK 294 (322)
T ss_pred CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcC----CCcCCCccCHHHHHHHHhhCCCCe
Confidence 3457999999999999998876 47899999999999999999999999753 379999999999999999999999
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHHHhh
Q 000113 470 TTIIANVSPSMCSANETLSTLKFAQRAK 497 (2159)
Q Consensus 470 T~MIa~VSPs~~n~eETLSTLrFAqRAK 497 (2159)
|+||+||||+..+++||++||+||+|+|
T Consensus 295 t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 295 TVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999986
No 15
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=4.5e-75 Score=682.45 Aligned_cols=329 Identities=44% Similarity=0.662 Sum_probs=293.4
Q ss_pred ceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCCCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEe
Q 000113 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFA 241 (2159)
Q Consensus 162 nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFA 241 (2159)
+|+|+||+||++..|.. .+...|+.+.+....+..+. ...|.||+||+++++|++||+.++.|+|+.+++|||+||||
T Consensus 2 ~i~V~vRvRP~~~~e~~-~~~~~~~~~~~~~~~v~~~~-~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 2 SVRVAVRVRPLLPKELL-EGCQVCVSVVPGEPQVTVGT-DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CeEEEEECCCCCchhcc-cCCCeEEEEeCCCCEEEecC-CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceee
Confidence 69999999999988753 44555776655544444443 56799999999999999999999999999999999999999
Q ss_pred ecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCCC---C
Q 000113 242 YGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPS---S 318 (2159)
Q Consensus 242 YGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p~---s 318 (2159)
||||||||||||+|+.... ....++|||||++++||..+... .....|.|.|||+|||||+|||||++. .
T Consensus 80 yG~tgSGKT~Tm~G~~~~~--~~~~~~Giipr~~~~LF~~~~~~-----~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 152 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTAS--EDEEEVGIIPRAIQHIFKKIDEK-----KDEPDFQLKVSFLELYNEEVRDLLSPSTSEK 152 (341)
T ss_pred ecCCCCCCcEEecCCCccc--cccccCChHHHHHHHHHHHHHhc-----cccceEEEEEEEEEeECCeeecCCCCcccCC
Confidence 9999999999999974432 22568999999999999998542 234689999999999999999999986 4
Q ss_pred CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCC--------Ccc
Q 000113 319 TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKD--------SMT 390 (2159)
Q Consensus 319 ~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~--------~~t 390 (2159)
..+.++++++++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+..... ...
T Consensus 153 ~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~ 232 (341)
T cd01372 153 SPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKN 232 (341)
T ss_pred CCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCC
Confidence 689999999999999999999999999999999999999999999999999999999999998876531 233
Q ss_pred ceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccE
Q 000113 391 HFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKT 470 (2159)
Q Consensus 391 ~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT 470 (2159)
....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+... .+..|||||+||||+||+|+|||||+|
T Consensus 233 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~-~~~~~ipyR~S~LT~lL~~~Lgg~s~t 311 (341)
T cd01372 233 STLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDES-KKGSHVPYRDSKLTRLLQDSLGGNSHT 311 (341)
T ss_pred ceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCCCcccHHHHHHHHhcCCCceE
Confidence 4567999999999999999999999999999999999999999999998643 245799999999999999999999999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q 000113 471 TIIANVSPSMCSANETLSTLKFAQRAKLIQ 500 (2159)
Q Consensus 471 ~MIa~VSPs~~n~eETLSTLrFAqRAK~Ik 500 (2159)
+||+||||+..+++||++||+||+|||.||
T Consensus 312 ~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 312 LMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999986
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=5.7e-75 Score=678.09 Aligned_cols=323 Identities=47% Similarity=0.699 Sum_probs=293.5
Q ss_pred CceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC-CCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCcee
Q 000113 161 HNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH-PETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCM 239 (2159)
Q Consensus 161 ~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~-p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TI 239 (2159)
++|+|+|||||++..|. ..+...|+...+..++.+.+. ....|.||+||+++++|++||+.++.|+|+.+++|||+||
T Consensus 2 ~~i~V~vRvRP~~~~e~-~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i 80 (325)
T cd01369 2 CNIKVVCRFRPLNEKEE-LRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTI 80 (325)
T ss_pred CCeEEEEEcCcCChhhh-ccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceE
Confidence 58999999999998874 345566777777766665432 3567999999999999999999999999999999999999
Q ss_pred EeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCCCCC
Q 000113 240 FAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSST 319 (2159)
Q Consensus 240 FAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p~s~ 319 (2159)
||||||||||||||+|+... ..++|||||++++||.++... .....|.|++||+|||||+|+|||+|...
T Consensus 81 ~ayG~tgSGKT~Tm~G~~~~-----~~~~Giipr~~~~Lf~~~~~~-----~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 150 (325)
T cd01369 81 FAYGQTGSGKTYTMEGPPGD-----PELKGIIPRIVHDIFEHISSM-----DENLEFHVKVSYLEIYMEKIRDLLDVSKD 150 (325)
T ss_pred EEeCCCCCCceEEecCCCCc-----cccCChHHHHHHHHHHHHhhc-----cCCceEEEEEEEEEEECCChhhcccCccC
Confidence 99999999999999998442 457899999999999998542 45678999999999999999999999988
Q ss_pred CceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccceeEeEeEe
Q 000113 320 NLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLNL 399 (2159)
Q Consensus 320 ~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r~SKL~L 399 (2159)
.+.+++++.+|++|+|++++.|.|++++..+|..|.++|++++|.+|..|||||+||+|.|.+..... .....|+|+|
T Consensus 151 ~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~s~l~~ 228 (325)
T cd01369 151 NLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET--GSKKRGKLFL 228 (325)
T ss_pred CceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC--CCEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998765332 2356799999
Q ss_pred eeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEeeCCC
Q 000113 400 VDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPS 479 (2159)
Q Consensus 400 VDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~VSPs 479 (2159)
||||||||..++++.|.+++|+..||+||++||+||.+|+. ++..||||||||||+||+|+|||||+|+||+||||+
T Consensus 229 VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~---~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~ 305 (325)
T cd01369 229 VDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTD---GKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPS 305 (325)
T ss_pred EECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHc---CCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999975 344899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcc
Q 000113 480 MCSANETLSTLKFAQRAKLI 499 (2159)
Q Consensus 480 ~~n~eETLSTLrFAqRAK~I 499 (2159)
..+++||++||+||+|||.|
T Consensus 306 ~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 306 SYNESETLSTLRFGARAKTI 325 (325)
T ss_pred cccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999987
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=4.5e-75 Score=678.54 Aligned_cols=310 Identities=38% Similarity=0.579 Sum_probs=278.4
Q ss_pred ceEEEEEeCCCCChhcccCCceeEEecCCC-----ceEEEcCC----CCceeEeceecCCCCChHHHHHhhchhHHHHhh
Q 000113 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTA-----QTLVWLGH----PETRFTFDHIACEMISQEKLFRVAGLPMVENCL 232 (2159)
Q Consensus 162 nVrV~VRVRPls~~E~~s~g~~~cv~~~s~-----~tiv~~g~----p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vL 232 (2159)
||+|+|||||+.+.|.. ...|+...+. ..+....+ ....|.||+||+++++|++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e~~---~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCEED---SSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCccccC---CCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHh
Confidence 69999999999888732 2345544322 23332221 235799999999999999999999999999999
Q ss_pred cCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccc
Q 000113 233 SGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITD 312 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~D 312 (2159)
+|||+||||||||||||||||+|+ ..++|||||++++||..+.. ..+.|.|++||+|||||+|||
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~--------~~~~Glipr~~~~Lf~~~~~-------~~~~~~v~~S~~EIy~e~v~D 142 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGD--------PNEPGLIPRTLSDLLRMGRK-------QAWTGAFSMSYYEIYNEKVYD 142 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCC--------cCccchHHHHHHHHHHHHhh-------ccccceEEEEEEEEECCEeeE
Confidence 999999999999999999999997 34789999999999988742 236799999999999999999
Q ss_pred cCCCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccce
Q 000113 313 LLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHF 392 (2159)
Q Consensus 313 LL~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~ 392 (2159)
||+|....+.+++++.++++|.|++++.|.|++|+..++..|..+|.+++|.+|..|||||+||+|.|.+.... ..
T Consensus 143 LL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~----~~ 218 (319)
T cd01376 143 LLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN----IQ 218 (319)
T ss_pred ccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC----ce
Confidence 99998888999999999999999999999999999999999999999999999999999999999999876322 25
Q ss_pred eEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEE
Q 000113 393 RFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTI 472 (2159)
Q Consensus 393 r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~M 472 (2159)
..|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+.. ..||||||||||+||+|+|||||+|+|
T Consensus 219 ~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~----~~~ipyr~S~LT~lL~~~L~g~s~t~~ 294 (319)
T cd01376 219 LEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKG----LPRIPYRESKLTRLLQDSLGGGSRCIM 294 (319)
T ss_pred EEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcC----CCcCCCccCHHHHHHHHhcCCCccEEE
Confidence 6799999999999999999999999999999999999999999999753 479999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhh
Q 000113 473 IANVSPSMCSANETLSTLKFAQRAK 497 (2159)
Q Consensus 473 Ia~VSPs~~n~eETLSTLrFAqRAK 497 (2159)
|+||||+..+++||++||+||+|||
T Consensus 295 i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 295 VANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred EEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999997
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=6.1e-75 Score=677.21 Aligned_cols=319 Identities=43% Similarity=0.654 Sum_probs=289.1
Q ss_pred ceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcC-CCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeE
Q 000113 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLG-HPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMF 240 (2159)
Q Consensus 162 nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g-~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIF 240 (2159)
||+|+||+||+...|. .+...++.+++..+++..+ .+...|.||+||+++++|++||+.++.|+|+++++|||+|||
T Consensus 1 ~V~V~vRvRP~~~~e~--~~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ 78 (321)
T cd01374 1 KIKVSVRVRPLNPRES--DNEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIF 78 (321)
T ss_pred CeEEEEEcCcCCcccc--cCCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEE
Confidence 6999999999998876 2344566666665555443 245679999999999999999999999999999999999999
Q ss_pred eecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCCCCCC
Q 000113 241 AYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTN 320 (2159)
Q Consensus 241 AYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p~s~~ 320 (2159)
|||||||||||||+|+ ..++|||||++++||..+... ....|.|++||+|||||+|||||+|....
T Consensus 79 ayG~tgSGKT~T~~G~--------~~~~Gli~r~~~~lf~~~~~~------~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 144 (321)
T cd01374 79 AYGQTSSGKTFTMSGD--------EQEPGIIPLAVRDIFQRIQDT------PDREFLLRVSYLEIYNEKIKDLLSPSPQE 144 (321)
T ss_pred eecCCCCCCceeccCC--------CCCCchHHHHHHHHHHHHhcc------cCceEEEEEEEEEEEcCEeEEccCCCCCC
Confidence 9999999999999997 367899999999999988532 24589999999999999999999999889
Q ss_pred ceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCC-CccceeEeEeEe
Q 000113 321 LQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKD-SMTHFRFARLNL 399 (2159)
Q Consensus 321 L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~-~~t~~r~SKL~L 399 (2159)
+.+++++.+|++|.|++++.|.|++++..+|..|.++|++++|.+|..|||||+||+|+|.+..... .......|+|+|
T Consensus 145 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~ 224 (321)
T cd01374 145 LRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNL 224 (321)
T ss_pred ceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999876543 234567799999
Q ss_pred eeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEeeCCC
Q 000113 400 VDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPS 479 (2159)
Q Consensus 400 VDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~VSPs 479 (2159)
||||||||..+.+ .|.+++|+.+||+||++||+||.+|+... +..|||||+||||+||+|+|||||+|+||+||||.
T Consensus 225 vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~--~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~ 301 (321)
T cd01374 225 IDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGK--NSGHIPYRDSKLTRILQPSLSGNARTAIICTISPA 301 (321)
T ss_pred EECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcC--CCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCc
Confidence 9999999999999 89999999999999999999999998642 26899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcc
Q 000113 480 MCSANETLSTLKFAQRAKLI 499 (2159)
Q Consensus 480 ~~n~eETLSTLrFAqRAK~I 499 (2159)
..+++||++||+||+|||.|
T Consensus 302 ~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 302 SSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred cccHHHHHHHHHHHHHHhcC
Confidence 99999999999999999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=6e-74 Score=673.03 Aligned_cols=315 Identities=40% Similarity=0.634 Sum_probs=278.0
Q ss_pred ceEEEEEeCCCCChhcccCCceeEEecCCC-ceEEE------------cCCCCceeEeceecCCCCChHHHHHhhchhHH
Q 000113 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTA-QTLVW------------LGHPETRFTFDHIACEMISQEKLFRVAGLPMV 228 (2159)
Q Consensus 162 nVrV~VRVRPls~~E~~s~g~~~cv~~~s~-~tiv~------------~g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV 228 (2159)
.|+|+||+||+...+.. ++...+. ..+.+ .+.....|.||+||++ ++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~~~~------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v 73 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS------SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVV 73 (334)
T ss_pred CeEEEEECCCCCCCCCc------cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHH
Confidence 48999999999874321 1122222 11111 1122346999999999 999999999999999
Q ss_pred HHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecc
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNE 308 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNE 308 (2159)
+++++|||+||||||||||||||||+|+... ..++|||||++++||.++.. .....|.|++||+|||||
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~-----~~~~Glipr~~~~lf~~~~~------~~~~~~~v~~S~~Eiy~e 142 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMTGGTES-----YKDRGLIPRALEQVFREVAM------RATKTYTVHVSYLEIYNE 142 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEccCCCCc-----ccCCchHHHHHHHHHHHHHh------ccCcceEEEEEEEEEECC
Confidence 9999999999999999999999999997432 35789999999999999853 235679999999999999
Q ss_pred cccccCCCCC------CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEe
Q 000113 309 QITDLLEPSS------TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIES 382 (2159)
Q Consensus 309 kI~DLL~p~s------~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~ 382 (2159)
+|||||+|.. ..+.+++++.++++|.|++++.|.|++|++.++..|..+|.+++|.+|..|||||+||+|+|.+
T Consensus 143 ~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~ 222 (334)
T cd01375 143 QLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLES 222 (334)
T ss_pred EeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEE
Confidence 9999999874 5689999999999999999999999999999999999999999999999999999999999998
Q ss_pred eecCCCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhh
Q 000113 383 HWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQD 462 (2159)
Q Consensus 383 ~~~~~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQD 462 (2159)
............|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.. ...||||||||||+||+|
T Consensus 223 ~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~---~~~~ipyRdSkLT~lL~d 299 (334)
T cd01375 223 RSREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEK---ARTHVPYRNSKLTHVLRD 299 (334)
T ss_pred EecCCCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhC---CCCCCCCcccHHHHHHHH
Confidence 76555555677899999999999999999999999999999999999999999999753 357999999999999999
Q ss_pred hcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhh
Q 000113 463 SLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAK 497 (2159)
Q Consensus 463 SLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK 497 (2159)
+|||||+|+||+||||+..++.||++||+||+|++
T Consensus 300 ~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 300 SLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred hcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999985
No 20
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.8e-74 Score=717.80 Aligned_cols=346 Identities=42% Similarity=0.579 Sum_probs=295.1
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEE--cCCCCc----eeEeceecCCCCChHHHHHhhchhHHHHhh
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVW--LGHPET----RFTFDHIACEMISQEKLFRVAGLPMVENCL 232 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~--~g~p~~----~FtFD~VFde~aSQEeVFe~v~~PLV~~vL 232 (2159)
..+||||+|||||+.+.+... ........+....+.. ...+.+ .|.||+||+|.++|++||..+ .|+|.+||
T Consensus 312 LkGnIRV~CRvRP~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~l 389 (670)
T KOG0239|consen 312 LKGNIRVFCRVRPLLPSEKQR-LQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV-SPLVQSAL 389 (670)
T ss_pred hhcCceEEEEecCCCcccccc-ccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH-HHHHHHHh
Confidence 589999999999999877542 1111222222211221 111222 399999999999999999987 59999999
Q ss_pred cCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccc
Q 000113 233 SGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITD 312 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~D 312 (2159)
+|||+||||||||||||||||.|+ .++++|||||++..||..+.. ...+|.|.+.+||+|||||.|+|
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~-------~~~~~Giipral~~lF~~~~~-----~~~g~~y~~~~s~~EIYNe~i~D 457 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGP-------TPEDPGIIPRALEKLFRTITS-----LKSGWKYDKTVSMLEIYNEAIRD 457 (670)
T ss_pred cCcceeEEEecccCCCccccccCC-------CcccCCccHHHHHHHHHHHHh-----hccCceEEeeeehhHHHHHHHHH
Confidence 999999999999999999999995 267899999999999998853 22389999999999999999999
Q ss_pred cCCCC--CCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCcc
Q 000113 313 LLEPS--STNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMT 390 (2159)
Q Consensus 313 LL~p~--s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t 390 (2159)
||++. ...+.|+.+..++++|.|++.+.|.+.+++..++..|..||++++|.+|.+|||||+||+++|.... ....
T Consensus 458 lL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~--~~t~ 535 (670)
T KOG0239|consen 458 LLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGIN--ELTG 535 (670)
T ss_pred hccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccc--cCcc
Confidence 99886 4789999999999999999999999999999999999999999999999999999999999997753 2333
Q ss_pred ceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccE
Q 000113 391 HFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKT 470 (2159)
Q Consensus 391 ~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT 470 (2159)
....|.|+|||||||||++++++.|.|++|+.+||+||++||.||.||+. +..||||||||||+||||||||++||
T Consensus 536 ~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~----k~~HiPyRNSKLT~lLq~sLGG~sKT 611 (670)
T KOG0239|consen 536 IRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS----KRSHIPYRNSKLTQLLQDSLGGDSKT 611 (670)
T ss_pred cccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh----cCCCCcccccchHHHhHhhhCCccce
Confidence 34569999999999999999999999999999999999999999999975 67899999999999999999999999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHH
Q 000113 471 TIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGDVTALQRQIQQLK 524 (2159)
Q Consensus 471 ~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~~v~~L~~eIq~LK 524 (2159)
+|+|+|||...++.||+++|+||.|++.+...+-.-.....+...+...++.++
T Consensus 612 Lmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~ 665 (670)
T KOG0239|consen 612 LMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQLEK 665 (670)
T ss_pred eeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccchhhhhhhhhhhh
Confidence 999999999999999999999999999998876554444444444444444443
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.2e-72 Score=655.51 Aligned_cols=322 Identities=45% Similarity=0.670 Sum_probs=288.3
Q ss_pred CCceEEEEEeCCCCChhcccCCceeEEecCCC--ceEEEcC--CCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCC
Q 000113 160 DHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTA--QTLVWLG--HPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGY 235 (2159)
Q Consensus 160 d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~--~tiv~~g--~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGy 235 (2159)
+++|+|+||+||+...+.. ....++.+.+. ..+.+.. .....|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 1 ~~~i~V~vRirP~~~~e~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v~~~~~G~ 77 (329)
T cd01366 1 KGNIRVFCRVRPLLPSEST--EYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEV-SPLVQSALDGY 77 (329)
T ss_pred CCCEEEEEEcCcCCccccC--CCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 4789999999999888752 22334554444 5555443 2346799999999999999999985 89999999999
Q ss_pred CceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCC
Q 000113 236 NSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLE 315 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~ 315 (2159)
|+||||||||||||||||+|+ ..++||+||++++||..+.... .....|.|++||+|||||+|||||+
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~--------~~~~Gli~r~~~~lf~~~~~~~----~~~~~~~v~~S~~EIy~e~v~DLL~ 145 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGP--------PENPGIIPRALEQLFNTAEELK----EKGWSYTITASMLEIYNETIRDLLA 145 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCC--------CCCCCcHHHHHHHHHHHHHhhh----ccCceEEEEEEEEEEECCEeEECCC
Confidence 999999999999999999997 3678999999999999986432 2357899999999999999999999
Q ss_pred CC---CCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccce
Q 000113 316 PS---STNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHF 392 (2159)
Q Consensus 316 p~---s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~ 392 (2159)
+. ...+.+++++.++++|.|++++.|.|++|+..++..|..+|.+++|.+|..|||||+||+|.|.+.... ....
T Consensus 146 ~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~--~~~~ 223 (329)
T cd01366 146 TKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ--TGEQ 223 (329)
T ss_pred CCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC--CCcE
Confidence 86 678999999999999999999999999999999999999999999999999999999999999876543 2335
Q ss_pred eEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEE
Q 000113 393 RFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTI 472 (2159)
Q Consensus 393 r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~M 472 (2159)
..|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.. ..|||||+||||+||+|+|||||+|+|
T Consensus 224 ~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~----~~~ipyr~S~LT~lL~~~l~g~~~t~~ 299 (329)
T cd01366 224 TRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK----DSHVPYRNSKLTYLLQDSLGGNSKTLM 299 (329)
T ss_pred EEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC----CCcCCCcccHhHHHHHHhcCCCceEEE
Confidence 6799999999999999999999999999999999999999999999753 689999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q 000113 473 IANVSPSMCSANETLSTLKFAQRAKLIQNN 502 (2159)
Q Consensus 473 Ia~VSPs~~n~eETLSTLrFAqRAK~IkN~ 502 (2159)
|+||||...+++||++||+||+||+.|+|.
T Consensus 300 i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 300 FVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999999999873
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=8.3e-71 Score=644.15 Aligned_cols=329 Identities=54% Similarity=0.779 Sum_probs=297.6
Q ss_pred ceEEEEEeCCCCChhcccCCceeEEecCCCc--eEEEcCC----CCceeEeceecCCCCChHHHHHhhchhHHHHhhcCC
Q 000113 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQ--TLVWLGH----PETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGY 235 (2159)
Q Consensus 162 nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~--tiv~~g~----p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGy 235 (2159)
+|+|+|||||+...|... +...|+.+.+.. .++..+. ....|.||+||+++++|++||+.++.|+|+.++.||
T Consensus 1 ~v~v~vRvrP~~~~e~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSR-KSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhc-CCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCC
Confidence 589999999999887543 344566655443 4443332 346799999999999999999999999999999999
Q ss_pred CceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCC
Q 000113 236 NSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLE 315 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~ 315 (2159)
|+||||||+|||||||||+|+ .+++|||||++++||..+... .....|.|+|||+|||||.|+|||+
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~--------~~~~Gli~~~~~~Lf~~~~~~-----~~~~~~~v~~S~~ei~~e~v~DLL~ 146 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGT--------PDSPGIIPRALKDLFEKIDKL-----EEGWQFQVKVSYLEIYNEKIRDLLN 146 (335)
T ss_pred ceeEEEeCCCCCCCceEecCC--------CCCCCHHHHHHHHHHHHhhhc-----ccCceEEEEEEEEEEECCEEEECcC
Confidence 999999999999999999997 356899999999999988532 2256899999999999999999999
Q ss_pred CCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccceeEe
Q 000113 316 PSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFA 395 (2159)
Q Consensus 316 p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r~S 395 (2159)
|....+.+++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|.|.+...+........|
T Consensus 147 ~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s 226 (335)
T smart00129 147 PSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKAS 226 (335)
T ss_pred CCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEE
Confidence 99889999999999999999999999999999999999999999999999999999999999999977555555567789
Q ss_pred EeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEe
Q 000113 396 RLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIAN 475 (2159)
Q Consensus 396 KL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~ 475 (2159)
+|+|||||||||..+.++.|.+++|+..||+||.+|++||.+|++. ++..|||||+|+||+||+++|||+|+|+||+|
T Consensus 227 ~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~--~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~ 304 (335)
T smart00129 227 KLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADG--QKSRHIPYRDSKLTRLLQDSLGGNSKTLMIAN 304 (335)
T ss_pred EEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhc--CCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEE
Confidence 9999999999999999999999999999999999999999999863 35789999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhhccccccccc
Q 000113 476 VSPSMCSANETLSTLKFAQRAKLIQNNAKVN 506 (2159)
Q Consensus 476 VSPs~~n~eETLSTLrFAqRAK~IkN~~~VN 506 (2159)
|||...+++||++||+||+|++.|+|+|++|
T Consensus 305 vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 305 ISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 9999999999999999999999999999886
No 23
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-69 Score=656.88 Aligned_cols=345 Identities=37% Similarity=0.560 Sum_probs=302.9
Q ss_pred cCCCCcCCCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcC-------------CCCceeEeceecCCCCChHH
Q 000113 152 VDDPLFWKDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLG-------------HPETRFTFDHIACEMISQEK 218 (2159)
Q Consensus 152 ~~dps~~~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g-------------~p~~~FtFD~VFde~aSQEe 218 (2159)
.+.+++.....|.|+||+||+.+ ..+...|+.+-+..++++.. .....|.|.+||+|+++|.+
T Consensus 22 ~~~~S~~~~d~v~v~~rvrP~~~----~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~d 97 (809)
T KOG0247|consen 22 TKGASCESKDPVLVVCRVRPLSD----ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQAD 97 (809)
T ss_pred ccccchhhhcchheeEeecCCCC----CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHH
Confidence 35667777888999999999985 22344577776666666542 22457999999999999999
Q ss_pred HHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHH-------------
Q 000113 219 LFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRME------------- 285 (2159)
Q Consensus 219 VFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~e------------- 285 (2159)
||+.++.|+|.+++.|-|+.+|+||.|||||||||+|+ +..+||+||++..||..|+..
T Consensus 98 vF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~--------~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~ 169 (809)
T KOG0247|consen 98 VFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGT--------PDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSN 169 (809)
T ss_pred HHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecC--------CCCCCchHHHHHHHHHHhhceeccCceeccccch
Confidence 99999999999999999999999999999999999998 567899999999999877410
Q ss_pred ---------------Hh---------h----------------------hccccceEEEEEeeeeeecccccccCCCCCC
Q 000113 286 ---------------EE---------N----------------------RRDERLKFSCKCSFLEIYNEQITDLLEPSST 319 (2159)
Q Consensus 286 ---------------ee---------~----------------------~~~~~~~fsVkvSflEIYNEkI~DLL~p~s~ 319 (2159)
.. . ..+.++.|+|||||+||||+-|||||.+.+.
T Consensus 170 ~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~ 249 (809)
T KOG0247|consen 170 LFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASF 249 (809)
T ss_pred HHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccc
Confidence 00 0 0125678999999999999999999987642
Q ss_pred -----C-ceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCcccee
Q 000113 320 -----N-LQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFR 393 (2159)
Q Consensus 320 -----~-L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r 393 (2159)
. ..+++|.++..||+|+++|.|+|.+|++.+|..|.++|++|+|.+|..|||||+||+|.|-+-+.......+.
T Consensus 250 q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~ 329 (809)
T KOG0247|consen 250 QGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQIT 329 (809)
T ss_pred cchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCcee
Confidence 2 5578999999999999999999999999999999999999999999999999999999998876664556678
Q ss_pred EeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCC-CCCccCCcchhhHHhhhhcCCCccEEE
Q 000113 394 FARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGK-HRHVPYRDSRLTFLLQDSLGGNSKTTI 472 (2159)
Q Consensus 394 ~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K-~~HVPYRDSKLTrLLQDSLGGNSKT~M 472 (2159)
.|.|.|||||||||..+|+++|.||+||++||.||++||+||.+|...+.++ +.+|||||||||++++.+|.|+++.+|
T Consensus 330 vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~M 409 (809)
T KOG0247|consen 330 VSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRM 409 (809)
T ss_pred EEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEE
Confidence 8999999999999999999999999999999999999999999999876544 579999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhhccccccccccC
Q 000113 473 IANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNEN 508 (2159)
Q Consensus 473 Ia~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed 508 (2159)
|+||+|...+|+|+++.|+||.-|+.|.+...++..
T Consensus 410 IV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~ 445 (809)
T KOG0247|consen 410 IVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIKK 445 (809)
T ss_pred EEecCCchhhHHHHHHHHHHHHhcccccccCccccc
Confidence 999999999999999999999999999888777653
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.1e-69 Score=632.12 Aligned_cols=320 Identities=52% Similarity=0.771 Sum_probs=290.4
Q ss_pred ceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCCC------CceeEeceecCCCCChHHHHHhhchhHHHHhhcCC
Q 000113 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHP------ETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGY 235 (2159)
Q Consensus 162 nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~p------~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGy 235 (2159)
+|+|+||+||+...+ ..+...|+.+++..++++...+ ...|.||+||+++++|++||+.++.|+|++++.||
T Consensus 1 ~i~V~vRvrP~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~ 78 (328)
T cd00106 1 NIRVVVRIRPLNGRE--SKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGY 78 (328)
T ss_pred CeEEEEEcCCCCccc--ccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 599999999998766 3345668888776666665433 47899999999999999999999999999999999
Q ss_pred CceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCC
Q 000113 236 NSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLE 315 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~ 315 (2159)
|+||||||||||||||||+|+ ..++|||||++++||..+.... .....|.|.+||+|||+|+|+|||+
T Consensus 79 ~~~i~~yG~tgSGKT~tl~G~--------~~~~Gli~~~~~~Lf~~~~~~~----~~~~~~~v~~S~~Ei~~e~v~DLL~ 146 (328)
T cd00106 79 NGTIFAYGQTGSGKTYTMFGS--------PKDPGIIPRALEDLFNLIDERK----EKNKSFSVSVSYLEIYNEKVYDLLS 146 (328)
T ss_pred ceeEEEecCCCCCCeEEecCC--------CCCCchHHHHHHHHHHHHhhcc----ccCceEEEEEEEEEEECCEeEECCC
Confidence 999999999999999999997 3678999999999999885422 1246799999999999999999999
Q ss_pred CC--CCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCcccee
Q 000113 316 PS--STNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFR 393 (2159)
Q Consensus 316 p~--s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r 393 (2159)
+. ...+.+++++.++++|.|++++.|.|++|++.++..|..+|.+++|.+|..|||||+||+|.|.+...........
T Consensus 147 ~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~ 226 (328)
T cd00106 147 PEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIK 226 (328)
T ss_pred CCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEE
Confidence 97 8899999999999999999999999999999999999999999999999999999999999999876654443467
Q ss_pred EeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEE
Q 000113 394 FARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTII 473 (2159)
Q Consensus 394 ~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MI 473 (2159)
.|+|+||||||||+...+++.|.+++|+..||+||++|++||.+|+... +..|||||+||||+||+|+|||+|+|+||
T Consensus 227 ~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~--~~~~ip~r~SkLT~lL~~~l~g~~~t~~I 304 (328)
T cd00106 227 SSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQ--KKKHIPYRDSKLTRLLQDSLGGNSKTLMI 304 (328)
T ss_pred EEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcC--CCCcCCCcCcHHHHHHHHhcCCCCeEEEE
Confidence 7999999999999999999999999999999999999999999997532 15899999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhh
Q 000113 474 ANVSPSMCSANETLSTLKFAQRAK 497 (2159)
Q Consensus 474 a~VSPs~~n~eETLSTLrFAqRAK 497 (2159)
+||||...+++||++||+||+|||
T Consensus 305 ~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 305 ANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred EEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999996
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=5.8e-70 Score=635.95 Aligned_cols=320 Identities=49% Similarity=0.720 Sum_probs=275.9
Q ss_pred EeCCCCChhcccCCceeEEecCC---CceEE----EcCCCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeE
Q 000113 168 RIRPLSNIEKVSQGYVRCLKQDT---AQTLV----WLGHPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMF 240 (2159)
Q Consensus 168 RVRPls~~E~~s~g~~~cv~~~s---~~tiv----~~g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIF 240 (2159)
||||++..|..... ..++.... ..... ........|.||+||+++++|++||+.++.|+|+++|+|||+|||
T Consensus 1 RvRP~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSA-ESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTT-EBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCC-cEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 99999998865433 33332221 11111 112234579999999999999999999999999999999999999
Q ss_pred eecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCCC---
Q 000113 241 AYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPS--- 317 (2159)
Q Consensus 241 AYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p~--- 317 (2159)
|||||||||||||+|+ ....++|||||++++||..+..... .....|.|+|||+|||||+|||||+|.
T Consensus 80 ayG~tgSGKT~Tm~G~------~~~~~~Gli~~~~~~lf~~~~~~~~---~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~ 150 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGS------NDPSEPGLIPRALRDLFSQIEERKE---KSGYEFSVSVSYLEIYNEKVYDLLSPNNSK 150 (335)
T ss_dssp EEESTTSSHHHHHTBS------TSTTTBSHHHHHHHHHHHHHHHHTT---TSTEEEEEEEEEEEEETTEEEETTSTTSSS
T ss_pred eecccccccccccccc------ccccccchhhhHHHHHhhhhccccc---cccccccccccchhhhhhhhhhhcCccccc
Confidence 9999999999999997 1246789999999999999864321 114689999999999999999999987
Q ss_pred -CCCceeeecCCCC-EEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCcc--cee
Q 000113 318 -STNLQLREDLKKG-VYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMT--HFR 393 (2159)
Q Consensus 318 -s~~L~IrED~k~G-v~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t--~~r 393 (2159)
...+.+++++..| ++|.|++++.|.|++++..+|..|.++|+++.|.+|..|||||+||+|.|.+........ ...
T Consensus 151 ~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~ 230 (335)
T PF00225_consen 151 SRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVK 230 (335)
T ss_dssp TTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEE
T ss_pred cccccceeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccee
Confidence 3579999999977 999999999999999999999999999999999999999999999999999887654443 357
Q ss_pred EeEeEeeeccCCccccCCcC-hhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEE
Q 000113 394 FARLNLVDLAGSERQKSSGA-EGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTI 472 (2159)
Q Consensus 394 ~SKL~LVDLAGSER~kkTga-eG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~M 472 (2159)
.|+|+|||||||||..++++ .|.+++|++.||+||++|++||.+|+.. ++..|||||+||||+||+|+|||||+|+|
T Consensus 231 ~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~--~~~~~vpyr~SkLT~lL~d~l~g~s~t~~ 308 (335)
T PF00225_consen 231 HSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG--SKQSHVPYRDSKLTRLLKDSLGGNSKTIL 308 (335)
T ss_dssp EEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT--TSTSSSCGGGSHHHHHTGGGTSSSSEEEE
T ss_pred ecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc--ccchhhhhhcccccceeccccccccccee
Confidence 89999999999999999987 4889999999999999999999999864 45789999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhhcc
Q 000113 473 IANVSPSMCSANETLSTLKFAQRAKLI 499 (2159)
Q Consensus 473 Ia~VSPs~~n~eETLSTLrFAqRAK~I 499 (2159)
|+||||+..+++||++||+||+|||.|
T Consensus 309 I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 309 IVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp EEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred EEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999987
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.3e-68 Score=627.44 Aligned_cols=327 Identities=35% Similarity=0.505 Sum_probs=282.6
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC----------CCceeEeceecCCCCChHHHHHhhchhHH
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH----------PETRFTFDHIACEMISQEKLFRVAGLPMV 228 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~----------p~~~FtFD~VFde~aSQEeVFe~v~~PLV 228 (2159)
.++.|.|+||-||++..|.... ...++.+.+.+.+++..+ ....|.||++||+.++++.||..+++|+|
T Consensus 206 ~ehrI~VCVRKRPLnkkE~~~k-eiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV 284 (676)
T KOG0246|consen 206 NEHRICVCVRKRPLNKKELTKK-EIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLV 284 (676)
T ss_pred ccceEEEEeecCCCCchhcccc-ccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHH
Confidence 5788999999999999885422 233455555555444321 13469999999999999999999999999
Q ss_pred HHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecc
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNE 308 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNE 308 (2159)
..+|+|.-+|+||||||||||||||.|++.+- .-+...||.-.+.+++|..+..- .-....+.|+|||||||+.
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk--~q~~s~giya~aa~Dvf~~L~~p----~Y~~~~l~v~~tFFEIYgG 358 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTMGGDFSGK--AQDCSKGIYALAARDVFRLLRQP----TYRKLDLKVYVTFFEIYGG 358 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeecccccCcc--cccccccchhhhhhHHHHHhccc----chhhcceEEEEEEEEEeCc
Confidence 99999999999999999999999999975432 12345699999999999887531 2235679999999999999
Q ss_pred cccccCCCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCC
Q 000113 309 QITDLLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDS 388 (2159)
Q Consensus 309 kI~DLL~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~ 388 (2159)
++||||++ ...|.+.+|++..|.|.||++..|.++++++.+|..|++-|+++.|..|..|||||+||+|.+.....
T Consensus 359 KvfDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~~--- 434 (676)
T KOG0246|consen 359 KVYDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHGE--- 434 (676)
T ss_pred chhhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCCc---
Confidence 99999997 56899999999999999999999999999999999999999999999999999999999999965321
Q ss_pred ccceeEeEeEeeeccCCccccCCc-ChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCC-
Q 000113 389 MTHFRFARLNLVDLAGSERQKSSG-AEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGG- 466 (2159)
Q Consensus 389 ~t~~r~SKL~LVDLAGSER~kkTg-aeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGG- 466 (2159)
...+||+.||||||+||...|. +..+...||+.|||||+||..||.||.. .+.|+|||.||||.+|+|||-|
T Consensus 435 --~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~----nk~H~PFR~SKLTqVLRDSFIGe 508 (676)
T KOG0246|consen 435 --FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGR----NKSHLPFRGSKLTQVLRDSFIGE 508 (676)
T ss_pred --ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcC----CCCCCCchhhhHHHHHHHhhcCC
Confidence 3467999999999999987665 5567788999999999999999999953 4679999999999999999988
Q ss_pred CccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q 000113 467 NSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNN 502 (2159)
Q Consensus 467 NSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~ 502 (2159)
|||||||+||||...+.+.||+|||||.|+|.....
T Consensus 509 nSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~ 544 (676)
T KOG0246|consen 509 NSRTCMIATISPGISSCEHTLNTLRYADRVKELSVD 544 (676)
T ss_pred CCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999976433
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.5e-67 Score=651.57 Aligned_cols=347 Identities=42% Similarity=0.635 Sum_probs=305.5
Q ss_pred eCCCCChhcccCCceeEEecCCCceEEEcCCCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCC
Q 000113 169 IRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSG 248 (2159)
Q Consensus 169 VRPls~~E~~s~g~~~cv~~~s~~tiv~~g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSG 248 (2159)
|||+...|. ..|..+|+.+.+..+.+.+|. ...|+||+||+..++|.++|+.++.|+++.+|.|||+||+||||||||
T Consensus 1 vRpl~~~e~-~~g~~~c~~~~~~~pqv~ig~-~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsg 78 (913)
T KOG0244|consen 1 VRPLKQMEE-EQGCRRCTEVSPRTPQVAIGK-DASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSG 78 (913)
T ss_pred CCCccchHH-HhcchhhcccCCCCCceeecC-CcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCC
Confidence 699998886 467888998655555454443 346999999999999999999999999999999999999999999999
Q ss_pred cceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCCCC--CCceeeec
Q 000113 249 KTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSS--TNLQLRED 326 (2159)
Q Consensus 249 KTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p~s--~~L~IrED 326 (2159)
|||||.+..... ..+.|||||+++.+|.+|.... ...|.|.|||+|||++.|+|||.|.. .++.+++
T Consensus 79 kTytmgt~~~~~----~~~~Gvipr~v~~~f~~i~~~~------~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e- 147 (913)
T KOG0244|consen 79 KTYTMGTNDAPA----QDTVGVIPRAVSTLFTRIGKTE------SFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE- 147 (913)
T ss_pred ceeecccccccc----cccCCcCcchHHHHHHHHHhhh------ccceeeeeeeeeccchhhhhhcChhhhhhceeccc-
Confidence 999998864332 2236999999999999996432 26799999999999999999999654 3577777
Q ss_pred CCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccceeEeEeEeeeccCCc
Q 000113 327 LKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLNLVDLAGSE 406 (2159)
Q Consensus 327 ~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r~SKL~LVDLAGSE 406 (2159)
+++++.+.|+|+++|.+..++...|..|...|++++|+||..|||||+|||+.+.++....... .-++||+||||||||
T Consensus 148 ~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s-~~~sKlhlVDLAGSE 226 (913)
T KOG0244|consen 148 PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRS-SFCSKLHLVDLAGSE 226 (913)
T ss_pred cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccc-hhhhhhheeeccccc
Confidence 7888999999999999999999999999999999999999999999999999998754333222 345999999999999
Q ss_pred cccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEeeCCCCCCHHHH
Q 000113 407 RQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANET 486 (2159)
Q Consensus 407 R~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~VSPs~~n~eET 486 (2159)
|.++|+++|+|++||.+||.+|++||+||+||.+... ..|||||||||||||||+||||++|+||+||||+..++.||
T Consensus 227 R~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk--~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~Et 304 (913)
T KOG0244|consen 227 RVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK--GGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQET 304 (913)
T ss_pred cccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc--CCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhH
Confidence 9999999999999999999999999999999987533 56999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccccCcc-ccHHHHHHHHHHHHHHHHHHH
Q 000113 487 LSTLKFAQRAKLIQNNAKVNENAS-GDVTALQRQIQQLKDKLSSLM 531 (2159)
Q Consensus 487 LSTLrFAqRAK~IkN~~~VNed~s-~~v~~L~~eIq~LK~eL~~l~ 531 (2159)
++||+||.||+.|+|+|+||.++. ..+..|+.+|+.|+.+|....
T Consensus 305 lnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 305 LNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999764 457789999999998886543
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-63 Score=620.48 Aligned_cols=342 Identities=43% Similarity=0.627 Sum_probs=292.3
Q ss_pred CCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCCC-CceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCce
Q 000113 160 DHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHP-ETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSC 238 (2159)
Q Consensus 160 d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~p-~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~T 238 (2159)
-.+++|+++..|-...+ ........ ..++.... ..+|.||+||++.++|++||+.+++|+++.++.|||||
T Consensus 21 ~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~T 92 (568)
T COG5059 21 VSDIKSTIRIIPGELGE-------RLINTSKK-SHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCT 92 (568)
T ss_pred ecCceEEEeecCCCcch-------heeecccc-cccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccce
Confidence 45678889998854432 11111111 11222222 55799999999999999999999999999999999999
Q ss_pred eEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCCCC
Q 000113 239 MFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSS 318 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p~s 318 (2159)
|||||||||||||||.|. ...+||||+++..||+.+.... .+..|.|.|||+|||||+++|||.|..
T Consensus 93 vfayGqTgsgKtyt~~G~--------~~~~Gii~~~l~~lf~~l~~~~-----~~~~~~v~is~lEiYnEk~~DLl~~~~ 159 (568)
T COG5059 93 VFAYGQTGSGKTYTMSGT--------EEEPGIIPLSLKELFSKLEDLS-----MTKDFAVSISYLEIYNEKIYDLLSPNE 159 (568)
T ss_pred EEEEcccCCCceeEeecC--------ccccchHHHHHHHHHHHHHhcc-----cCcceeeEeehhHHHhhHHHhhccCcc
Confidence 999999999999999997 3678999999999999985421 146799999999999999999999988
Q ss_pred CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccceeEeEeE
Q 000113 319 TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLN 398 (2159)
Q Consensus 319 ~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r~SKL~ 398 (2159)
..+.++++...+|+|.|+++..|.++++++.+|..|..+|++++|.+|..|||||+||++.+.+........ ..++++
T Consensus 160 ~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~--~~~~l~ 237 (568)
T COG5059 160 ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTS--ETSKLS 237 (568)
T ss_pred ccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccce--ecceEE
Confidence 778899999999999999999999999999999999999999999999999999999999998876544433 337999
Q ss_pred eeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEeeCC
Q 000113 399 LVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSP 478 (2159)
Q Consensus 399 LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~VSP 478 (2159)
|||||||||...+++.|.|++||.+||+||++||+||++|.+. ++..|||||+|||||+|+++|||+|+|+|||||+|
T Consensus 238 lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~--~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp 315 (568)
T COG5059 238 LVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDK--KKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISP 315 (568)
T ss_pred EEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhcc--ccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcC
Confidence 9999999999999999999999999999999999999999763 45689999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcccccccccc--CccccHHHHHHHHHHHHHH
Q 000113 479 SMCSANETLSTLKFAQRAKLIQNNAKVNE--NASGDVTALQRQIQQLKDK 526 (2159)
Q Consensus 479 s~~n~eETLSTLrFAqRAK~IkN~~~VNe--d~s~~v~~L~~eIq~LK~e 526 (2159)
...+++||.+||+||.|||.|+|.+.+|. +....+..+...+-..+..
T Consensus 316 ~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 365 (568)
T COG5059 316 SSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSE 365 (568)
T ss_pred CCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999995 3333333333333333333
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=3.5e-50 Score=437.39 Aligned_cols=178 Identities=56% Similarity=0.848 Sum_probs=165.5
Q ss_pred HHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEE
Q 000113 219 LFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSC 298 (2159)
Q Consensus 219 VFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsV 298 (2159)
||+.++ |+|+.+++|||+||||||||||||||||+|+ +.++|||||++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~--------~~~~Giip~~~~~--------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGK--------REGAGIIPRTVTD--------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCC--------CCCCCcchHHHHH---------------------
Confidence 999999 9999999999999999999999999999997 3678999999876
Q ss_pred EEeeeeeecccccccCCCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEE
Q 000113 299 KCSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTC 378 (2159)
Q Consensus 299 kvSflEIYNEkI~DLL~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI 378 (2159)
++.++..|.++|+++.|.+|..|||||+||+|
T Consensus 58 ------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i 89 (186)
T cd01363 58 ------------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRI 89 (186)
T ss_pred ------------------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEE
Confidence 78899999999999999999999999999999
Q ss_pred EEEeeecCC-CccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhh
Q 000113 379 IIESHWEKD-SMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLT 457 (2159)
Q Consensus 379 ~Ie~~~~~~-~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLT 457 (2159)
+|.+..... +....+.|+|+|||||||||..++++.|.+++|+++||+||++||+||.+|++ +..||||||||||
T Consensus 90 ~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~----~~~~vpyr~SkLT 165 (186)
T cd01363 90 HFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE----RDSHVPYRESKLT 165 (186)
T ss_pred EEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhc----CCCCCCCcccHHH
Confidence 998875433 23446789999999999999999999999999999999999999999999975 3579999999999
Q ss_pred HHhhhhcCCCccEEEEEeeCC
Q 000113 458 FLLQDSLGGNSKTTIIANVSP 478 (2159)
Q Consensus 458 rLLQDSLGGNSKT~MIa~VSP 478 (2159)
+||+|+|||||+|+||+||||
T Consensus 166 ~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 166 RLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHHHhcCCCCeEEEEEEeCc
Confidence 999999999999999999999
No 30
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=99.78 E-value=5e-19 Score=173.13 Aligned_cols=86 Identities=63% Similarity=0.961 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhcCCCChhhhHHHHHHHHHHHHHHHHHhhhhChHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000113 631 REEKIKQLELLVNGSVTAEKYLMDENIALKEEIQLLQARIDRNPELTRFALENIRLLEQLQLFQSFYEQGEREKLLAELA 710 (2159)
Q Consensus 631 ree~i~~lE~l~s~~l~~E~~L~~En~~lk~Ei~~Lq~~~d~~~Ev~~~~~En~~L~eel~~~~~f~~~gere~l~~ei~ 710 (2159)
|+++|.+||.+.+|.++++.++.++|.+|++||+.|+++||+||+|+|||+||.+|++|+++|++||+.||||+|++||+
T Consensus 1 REdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~eis 80 (86)
T PF12711_consen 1 REDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYVEGEREMLLQEIS 80 (86)
T ss_pred CchHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000113 711 ELRDQL 716 (2159)
Q Consensus 711 ~Lr~ql 716 (2159)
.||+||
T Consensus 81 ~L~~~l 86 (86)
T PF12711_consen 81 ELRDQL 86 (86)
T ss_pred HHHhhC
Confidence 999985
No 31
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=99.75 E-value=1.4e-17 Score=197.64 Aligned_cols=187 Identities=31% Similarity=0.496 Sum_probs=167.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhHHHHHHHH
Q 000113 580 KRLECMLLGSLRREKMAEAVTQKLEAEIEHMNRLLCQREEDTQHTKMMLRFREEKIKQLELLVNGSVTAEKYLMDENIAL 659 (2159)
Q Consensus 580 k~lE~~L~~alrre~~~E~e~~kleeeie~ln~Ll~qkee~~q~sk~~lklree~i~~lE~l~s~~l~~E~~L~~En~~l 659 (2159)
+..+..++++++|++..++.|.+...+|++||+||.+++.+.+++..+...|+++|.++|.+++|.++.+.++-+|..+|
T Consensus 101 KavekVlagaIrREmeLEe~C~eQAakIeQLNrLVqQyK~ErE~naiI~Q~re~k~~rleslmdg~l~~~e~~~ee~~sl 180 (488)
T PF06548_consen 101 KAVEKVLAGAIRREMELEEVCAEQAAKIEQLNRLVQQYKHERECNAIIAQTREDKILRLESLMDGVLPTEEFIDEEYVSL 180 (488)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHhhhhHHHHHHHhhccccchHHHhhhHhhhh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhChHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHhhccccc----------cc
Q 000113 660 KEEIQLLQARIDRNPELTRFALENIRLLEQLQLFQSF-YEQGEREKLLAELAELRDQLLDIVEGKERF----------SS 728 (2159)
Q Consensus 660 k~Ei~~Lq~~~d~~~Ev~~~~~En~~L~eel~~~~~f-~~~gere~l~~ei~~Lr~ql~~~~~~~~~~----------~~ 728 (2159)
+.|.+.|+.+|++||+|.+..+|.++++++|..|++| ||.||||+|++||++||+||.++++..... +.
T Consensus 181 ~~e~KlLk~~~en~pevl~~~~E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~ 260 (488)
T PF06548_consen 181 MHEHKLLKEKYENHPEVLKEKIELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQYYTDSSMSTDRLRSSLLQRSY 260 (488)
T ss_pred hhHhhhhhhhccCchHHHhhHhHHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHHhccccccccccccccHHhhhh
Confidence 9999999999999999999999999999999999998 999999999999999999999888866321 10
Q ss_pred ----------ccchhhhhhHHHHHHHHhhhhHHHHHHHHHHHHhhhcc
Q 000113 729 ----------RHENQENDTTTELENCRNMNSKLMREVEELRTELRNCG 766 (2159)
Q Consensus 729 ----------~~~~~~~~~~~~~~~c~~~~~~l~r~~~~~~~~~~~~~ 766 (2159)
...+....+.+|-..|-++-++-+---++|+.+|+.++
T Consensus 261 ~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsLteeLR~dle~~r 308 (488)
T PF06548_consen 261 QLRPSAIPESGDENAEEELEQERQRWTEAESKWISLTEELRVDLESSR 308 (488)
T ss_pred ccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 11233455566666888888888888888888888653
No 32
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.13 E-value=0.00044 Score=97.20 Aligned_cols=287 Identities=23% Similarity=0.321 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHH-------hhhhhhHHhhhhHHHHHHHHHHHHHHh
Q 000113 1594 ETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVI-------AKGTIDTLSDQNADLRVLLKDLYLKKS 1666 (2159)
Q Consensus 1594 e~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~-------~~~~~~~ls~eN~eLr~~l~~~~~~k~ 1666 (2159)
.-..+..++..++-+|+.-+..=..++...++||+.+.+.+.++.. +...+..+..+=.+|-..+++......
T Consensus 1577 ~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~ 1656 (1930)
T KOG0161|consen 1577 LRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRARE 1656 (1930)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3345778888899999999999999999999999999999999887 555666666666677777777777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhH
Q 000113 1667 EAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLN 1746 (2159)
Q Consensus 1667 ~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~ 1746 (2159)
++.+++.+--+=...|+.|+..|... .++.-..=|.+-.+...+.+.|..+....+-++.++-.|+.+|..|.
T Consensus 1657 e~~~q~~~aerr~~~l~~E~eeL~~~-------l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~ 1729 (1930)
T KOG0161|consen 1657 ELLEQLAEAERRLAALQAELEELREK-------LEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQ 1729 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Confidence 77777777777777888888887766 44444444556566677777777777777889999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhh----------hhHHHHHHHHhHHHHHhHH---------------HHH
Q 000113 1747 DKLAMAYALADENEAIAVEARQELEASKLYAEQ----------KEEEVKILEHSIEELEHTV---------------NAL 1801 (2159)
Q Consensus 1747 ~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~----------keeevk~le~sveele~ti---------------n~L 1801 (2159)
.-|+-+... .++.--.++++.---.-|+++ =+..-+.||+.|.+|..-+ +.|
T Consensus 1730 ~elee~~~~---~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~L 1806 (1930)
T KOG0161|consen 1730 SELEEEQSE---LRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKL 1806 (1930)
T ss_pred HHHHHHHHH---HHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 999877643 333333333322111122221 2333456666666655444 344
Q ss_pred HhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000113 1802 EKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLERE 1881 (2159)
Q Consensus 1802 E~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~ 1881 (2159)
|.+|-.+-.+++ .| -|..+.... .--.+.|+..+-.-...+=+..+..+...
T Consensus 1807 earir~LE~~l~----------~E---~~~~~e~~k---------------~~rk~er~vkEl~~q~eed~k~~~~~q~~ 1858 (1930)
T KOG0161|consen 1807 EARIRELESELE----------GE---QRRKAEAIK---------------GLRKKERRVKELQFQVEEDKKNIERLQDL 1858 (1930)
T ss_pred HHHHHHHHHHHh----------Hh---hhhhHHHhH---------------HHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 433333322221 11 111111111 01134566666666666778888999999
Q ss_pred hhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000113 1882 KEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIR 1922 (2159)
Q Consensus 1882 ~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~ 1922 (2159)
+....+-|++||.-+.| +|.+|.++..||+-+.+=.+
T Consensus 1859 ~dkl~~k~~~~krQlee----aE~~~~~~~~k~R~~q~ele 1895 (1930)
T KOG0161|consen 1859 VDKLQAKIKQYKRQLEE----AEEEANQNLSKYRKLQRELE 1895 (1930)
T ss_pred HHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 68999999999986555443
No 33
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.99 E-value=0.0012 Score=91.72 Aligned_cols=634 Identities=20% Similarity=0.230 Sum_probs=328.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhh---
Q 000113 1337 EEARETMREADSMLNTLLKANENAKQLNDKWRQAGEQLMADRASLTDEVEQLKFLIRLKEEENELLMDHLHFNMSEI--- 1413 (2159)
Q Consensus 1337 EEAqaTmkEAD~mlnaL~~ANE~~K~~~~~~Kq~~e~l~~Ek~~L~~evq~Lks~i~~ke~en~~L~~~~~~~L~em--- 1413 (2159)
..-+.|+.+|+-.|-.|.+..+.+ .|.-+.|+.+|+.+-.-...+.... ...+..+.+..+
T Consensus 568 ~~~k~~~~~a~e~i~~L~~~l~e~-------~~~i~sLl~erd~y~e~l~~~e~~~---------~~k~nss~~~~t~~~ 631 (1822)
T KOG4674|consen 568 NILKETINEASEKIAELEKELEEQ-------EQRIESLLTERDMYKELLAELEDSH---------QLKPNSSALDQTEAP 631 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhcccccc---------cCCCCchhhcccccc
Confidence 445667888888888888877777 5566677777776643222222111 122222222222
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHhHhhhhhchhhhhHhhhhhhHHHHhhc
Q 000113 1414 ---DTSISLLEGCFLQVQKEVEDRFKELYSDALLMGRDVHHFISNSKSLQDDIFSGIMEKGFQQFVFYLCHIGAFMHKIL 1490 (2159)
Q Consensus 1414 ---~~~v~~LE~~~~q~q~~~~e~~~~~~~d~~~~~~~~l~~~~~~r~~le~i~sei~~k~~~~~vl~~c~~G~ll~~i~ 1490 (2159)
...+..|+.-|..++.+..++...+.-|+-.|..+ ++.+|+-++++-++. +||--=+ ..|++..
T Consensus 632 ~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~e----v~~ir~~l~k~~~~~---~fA~ekl------e~L~~~i 698 (1822)
T KOG4674|consen 632 RAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKE----VTAIRSQLEKLKNEL---NLAKEKL------ENLEKNL 698 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHH---HHHHHHH------HHHHHHH
Confidence 34667778888888888888888888888555544 456677777753322 2221100 0111111
Q ss_pred cc-c------------cccCCCcchhhhhhhhcCCCchhhccchhHHHHhhcccCCCCCccccc--cccccccccccccc
Q 000113 1491 NS-S------------IESGFHPLRQQENYIFRNLSPRFLLNSQDDILITEKGAEDGDHNEWGT--NMEEFFLSHSHLSY 1555 (2159)
Q Consensus 1491 ~~-~------------i~~~~~~~~~qe~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~v~~l--~~~e~~~~~~~l~~ 1555 (2159)
+. - ....|.+- -|.-+..+ ..|.+...-.+.++..|..| +..=+..+...|..
T Consensus 699 e~~K~e~~tL~er~~~l~~~i~~~-~q~~~~~s-----------~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~ 766 (1822)
T KOG4674|consen 699 ELTKEEVETLEERNKNLQSTISKQ-EQTVHTLS-----------QELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQ 766 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-----------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0 01111110 00000000 00110000001111112122 11112345578888
Q ss_pred chhhhHHHHhhHHHHhhhhcccchhhhhhhc-cccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchh
Q 000113 1556 ENLSLKKELQRKEVLLQGLLFDFSLLQESAS-NKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTE 1634 (2159)
Q Consensus 1556 en~~l~~El~RK~~~~kGL~FD~sLLQESaS-n~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~ 1634 (2159)
++-+|..|..|=..++.-|=|=-.-+++|-+ -..++.-++++|...|..+..+|..|.+++.++-.. .+
T Consensus 767 e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~----------~~ 836 (1822)
T KOG4674|consen 767 ELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNS----------LE 836 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hh
Confidence 8889999888877777666665555566644 455688899999999999999999999998884332 22
Q ss_pred hHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchh
Q 000113 1635 NALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDR 1714 (2159)
Q Consensus 1635 ~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~ 1714 (2159)
.-|..++..++.+-+.+..+-+.|.-+-.....++.++.+-.+.|++.+-....|.+- ++-+| .
T Consensus 837 ~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~---------~~~~d-------~ 900 (1822)
T KOG4674|consen 837 KQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSK---------SSNED-------A 900 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc---------chhhh-------h
Confidence 2334466777777777777777777777777778888888888888888888887762 01112 2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh-hhhhhhHHHHHHHHhHHH
Q 000113 1715 DKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKL-YAEQKEEEVKILEHSIEE 1793 (2159)
Q Consensus 1715 ~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~-yae~keeevk~le~svee 1793 (2159)
..+-++ |+. ..+++-.|+.+|.+|++-..+-.+++.-..|..+.-|- |.|=+ +-++-.++.
T Consensus 901 ~~~~~~---Lr~-----------~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~----~~~ea~ie~ 962 (1822)
T KOG4674|consen 901 TILEDT---LRK-----------ELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR----LELEAKIES 962 (1822)
T ss_pred hhhhHH---HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHH
Confidence 222211 222 23456677888999999999999999888888877653 43333 456777777
Q ss_pred HHhHHHHHHhHhhhhhhhHHhhh----hhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHH
Q 000113 1794 LEHTVNALEKKVYEMNGEVERHH----LIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQ 1869 (2159)
Q Consensus 1794 le~tin~LE~kV~~~k~e~~r~r----~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~ 1869 (2159)
++--+.-||.++.++++++.+-+ +.-...|.++-.+..++..+.|.-...-..-..+--...++...+......+.
T Consensus 963 ~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~ 1042 (1822)
T KOG4674|consen 963 LHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLR 1042 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776655 33334444444444455555443220000000000011222333333333333
Q ss_pred HHHHHHH-------HHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHH---HHHHHHHHHHHHhhcC------CCCccc
Q 000113 1870 EAHHRIQ-------LLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQ---QKYKTLEAMIREMQTN------LSNTTA 1933 (2159)
Q Consensus 1870 ~a~~~i~-------~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~---~k~k~lEaM~~~~k~~------~~~~~~ 1933 (2159)
.|+++-+ .+...+-.-.++..+|++-...|+.-.+.+...|- -++.+=+.|.++-... +.|..|
T Consensus 1043 ~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qN 1122 (1822)
T KOG4674|consen 1043 KAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQN 1122 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332211 11111222223333344444444443333333322 1222222333222111 122222
Q ss_pred ccccccccccccccc---cCCCCCCcchhh---HHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhc
Q 000113 1934 AAAPAQDKIEKSSTR---LRGSSSPFRCIA---SVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAES 2007 (2159)
Q Consensus 1934 ~~~~~~~k~EK~s~r---tRGS~SPFrCI~---glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eS 2007 (2159)
...+..+|.-+.. .+||-.-=. -+ .||==+ -++-|+..+++-+- ++|-.+|+.+-+-.+.
T Consensus 1123 --slLh~qie~~s~~~~~~n~S~~~~g-~sdL~~iv~~L--R~Ekei~~tk~~~l---------k~e~~~L~qq~~~~~k 1188 (1822)
T KOG4674|consen 1123 --SLLHDQFEELSQQSAVSNLSAMLLG-LSDLQNIVSFL--RKEKEIAETKLDTL---------KRENARLKQQVASLNR 1188 (1822)
T ss_pred --HHHHHHHHHHhhhhhhccccccccc-hHHHHHHHHHH--HhHHHHHhhhHHHH---------HHHHHHHHHHHHHHHH
Confidence 1233444444444 344432211 11 122111 22223333333333 4556688888888888
Q ss_pred chhHHHHhhhcccccccchhhhhhhHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000113 2008 MTHDVIRDLLGVKLDMTNYANLIDQEH-VQKLVVA-------AQQQTQELLAKEQIILNLRKRIEDLIEE 2069 (2159)
Q Consensus 2008 MTHDVIRdLLGVKldmTnyA~liD~~q-~~kl~e~-------a~~~~~e~~~ke~e~~~Lk~q~~~lieE 2069 (2159)
|--|.=|-|-|------+||.-+|++. +++.++. =....++-.+...-+..|+.+|+.+-.+
T Consensus 1189 ~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~e 1258 (1822)
T KOG4674|consen 1189 TIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFE 1258 (1822)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888877776666666776666542 2222222 2233444444444444555555444433
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=98.85 E-value=0.00011 Score=98.11 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000113 1869 QEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIR 1922 (2159)
Q Consensus 1869 ~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~ 1922 (2159)
......|.-|+.++.+...++..++..+. .+.+...|+.+|..++..+.
T Consensus 478 ~~~~~~~~~le~~l~~~~~~~e~l~~~~~-----~~~~l~~l~~~~~~l~~~~~ 526 (880)
T PRK02224 478 EELEAELEDLEEEVEEVEERLERAEDLVE-----AEDRIERLEERREDLEELIA 526 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555554444444444322 25666788888888887544
No 35
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.80 E-value=0.0052 Score=85.96 Aligned_cols=392 Identities=21% Similarity=0.229 Sum_probs=206.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhh
Q 000113 1656 VLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKER 1735 (2159)
Q Consensus 1656 ~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Er 1735 (2159)
..+.++...++.+.+++....+++...+.-|--+.+- ...+.+.+|..-++-.+=+=.-..+-..|.++..+=
T Consensus 997 ~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~d-------l~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~ 1069 (1822)
T KOG4674|consen 997 DKLLDLSREISSLQNELKSLLKAASQANEQIEDLQND-------LKTETEQLRKAQSKYESELVQHADLTQKLIKLREEF 1069 (1822)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333332 222233333333333333333445556777788888
Q ss_pred hhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhh
Q 000113 1736 DKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERH 1815 (2159)
Q Consensus 1736 d~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~ 1815 (2159)
..+.+|+..|+...+.+.++.+|.++=-.|.+ +.|+.-|.++++-|--|+++-..
T Consensus 1070 ~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~-----------------~~Leqe~~~~~~~~~~L~~qNsl-------- 1124 (1822)
T KOG4674|consen 1070 AKCNDELLKLKKSRESRHALLSEQERDWSEKE-----------------DALEQEVNELKKRIESLEKQNSL-------- 1124 (1822)
T ss_pred HHHHHHHHHHHhhHHHHHhHHhhcccchHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 88899999999999999999888876433332 23444444444444444432211
Q ss_pred hhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 000113 1816 HLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDY 1895 (2159)
Q Consensus 1816 r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~ 1895 (2159)
|...+.++-+... |-|.+ .+ +.++.+..+.|..|.+|..--+.++.=|+
T Consensus 1125 ------Lh~qie~~s~~~~-~~n~S---------~~-------------~~g~sdL~~iv~~LR~Ekei~~tk~~~lk-- 1173 (1822)
T KOG4674|consen 1125 ------LHDQFEELSQQSA-VSNLS---------AM-------------LLGLSDLQNIVSFLRKEKEIAETKLDTLK-- 1173 (1822)
T ss_pred ------HHHHHHHHhhhhh-hcccc---------cc-------------ccchHHHHHHHHHHHhHHHHHhhhHHHHH--
Confidence 1122222221111 11111 11 11145566677777666555555554443
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccccccCCCCCCcchhhHHHHHhhhhhh----
Q 000113 1896 LSEVVLHSEAQASQYQQKYKTLEAMIREMQTNLSNTTAAAAPAQDKIEKSSTRLRGSSSPFRCIASVVQQMNSEKD---- 1971 (2159)
Q Consensus 1896 isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~~~~~~~~~~~~~~k~EK~s~rtRGS~SPFrCI~glvQQmn~EKD---- 1971 (2159)
+-..-|+|+|..++.|+....... +-.+..+-.+=-|---|.=|...|++||.=+|
T Consensus 1174 ---------~e~~~L~qq~~~~~k~i~dL~~sL-----------~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~ 1233 (1822)
T KOG4674|consen 1174 ---------RENARLKQQVASLNRTIDDLQRSL-----------TAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKV 1233 (1822)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHH
Confidence 335678899999999997665441 00000010111112235556688999994443
Q ss_pred --hhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhh-----------cchhHHHHhhhcccccccchhhhhhhHHHHHH
Q 000113 1972 --QELSAATLRIQKLEALAASRQKEVCMLNTRLAAAE-----------SMTHDVIRDLLGVKLDMTNYANLIDQEHVQKL 2038 (2159)
Q Consensus 1972 --qEls~ArlRIeELE~laa~rQkEi~~LnarLAa~e-----------SMTHDVIRdLLGVKldmTnyA~liD~~q~~kl 2038 (2159)
+|+-+--.||.||..-+...+.+++=|..+|.+.. .|-|+++|=..-+-==.-.| .=+|.....||
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~-k~~d~~~~~kL 1312 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKY-KDSDKNDYEKL 1312 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCHHHHHHH
Confidence 67778888999999999999999999888886654 56677776322211000001 11344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------H----HHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHH----HHHH
Q 000113 2039 VVAAQQQTQELLAKEQIILNL-------R----KRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQ----LLSA 2103 (2159)
Q Consensus 2039 ~e~a~~~~~e~~~ke~e~~~L-------k----~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdq----lL~a 2103 (2159)
...+...-++..+|+..+..| | +|+++|+.+++..-.++++...---.---++..+.++.. ..++
T Consensus 1313 ~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~ 1392 (1822)
T KOG4674|consen 1313 KSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKKA 1392 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666555443 3 677777777777666655433211111111122222211 1222
Q ss_pred ---hhhhhhcchhhhhhHh---hhhHHHHHHHhc
Q 000113 2104 ---QNDMLKMDKTNLLKRI---SELDDMVKMLIG 2131 (2159)
Q Consensus 2104 ---qnemLk~e~~n~~~ki---~eLd~~vk~L~g 2131 (2159)
.+++..-.+..++.++ .|++--++.|--
T Consensus 1393 ~~~~~e~t~rk~e~~~~k~~~~~e~~sl~eeL~e 1426 (1822)
T KOG4674|consen 1393 HELMQEDTSRKLEKLKEKLELSEELESLKEELEE 1426 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2344455555566666 666666666644
No 36
>PRK03918 chromosome segregation protein; Provisional
Probab=98.73 E-value=0.0018 Score=86.60 Aligned_cols=96 Identities=16% Similarity=0.303 Sum_probs=49.0
Q ss_pred HHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccC---CCchhhhhhhH-HHHHHHH
Q 000113 1793 ELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINA---GHTEDQMSRKL-QDRLLQL 1868 (2159)
Q Consensus 1793 ele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~---~~~~~~~~r~~-~~~~~~l 1868 (2159)
+|...+.-|+++...+..+....+-....++.++..|+..|....+..+ .|| ..-...-+.++ ......+
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~------~Cp~c~~~L~~~~~~el~~~~~~ei 461 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKG------KCPVCGRELTEEHRKELLEEYTAEL 461 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCCCCcCCchhHHHHHHHHHHHH
Confidence 4555555555555555655555555555666666666665555443322 343 22222222222 3333445
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHh
Q 000113 1869 QEAHHRIQLLEREKEEQNEEIKRCKD 1894 (2159)
Q Consensus 1869 ~~a~~~i~~l~~~~~~k~~ei~q~k~ 1894 (2159)
.+..++|..|+.+...-+.+++..+.
T Consensus 462 ~~l~~~~~~l~~~~~~l~~~~~~~~~ 487 (880)
T PRK03918 462 KRIEKELKEIEEKERKLRKELRELEK 487 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666655433
No 37
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.73 E-value=0.0004 Score=94.08 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=30.7
Q ss_pred hhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhcchhHHHHhhhcccccccchh
Q 000113 1972 QELSAATLRIQKLEALAASRQKEVCMLNTRLAAAESMTHDVIRDLLGVKLDMTNYA 2027 (2159)
Q Consensus 1972 qEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eSMTHDVIRdLLGVKldmTnyA 2027 (2159)
.++...+..+++|+.-...-+.++-.+.+.+.....--+...+++-+...++....
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 732 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555666666655544444433
No 38
>PRK02224 chromosome segregation protein; Provisional
Probab=98.68 E-value=0.00061 Score=91.28 Aligned_cols=68 Identities=26% Similarity=0.316 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhh
Q 000113 2054 QIILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISEL 2122 (2159)
Q Consensus 2054 ~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eL 2122 (2159)
.++..+.++++++-.++..+- ++..-..++....-.+..|+.+-..|.+.++-++-+...++.+|.+|
T Consensus 572 ~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 572 EEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777778877777777666 57777777777777777777777777777777777777777777766
No 39
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.46 E-value=0.0088 Score=81.50 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=25.6
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhHHHHHHH
Q 000113 2073 CTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISELDDMVKML 2129 (2159)
Q Consensus 2073 ~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd~~vk~L 2129 (2159)
+-.+++.-...+...+..+..++++-+-+..+...|..+...+.+++.+++..+..+
T Consensus 794 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~ 850 (1179)
T TIGR02168 794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444444444444433
No 40
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.46 E-value=0.006 Score=80.94 Aligned_cols=455 Identities=20% Similarity=0.283 Sum_probs=266.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHH-------HhhhhchhhH-HHHhhhhhhHHhhhhHHHHHHHHHHHHHH
Q 000113 1594 ETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKL-------EASLTDTENA-LVIAKGTIDTLSDQNADLRVLLKDLYLKK 1665 (2159)
Q Consensus 1594 e~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~L-------E~~L~d~~~a-l~~~~~~~~~ls~eN~eLr~~l~~~~~~k 1665 (2159)
+++.+-.-...|+.||+.+-+.|......-..+ |..+.+-.++ ++.+++-+..+-.+|.-+...+..
T Consensus 4 ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~----- 78 (775)
T PF10174_consen 4 QLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQA----- 78 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH-----
Confidence 466777888999999999999888777665553 5666665544 666888888888888866555543
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHhhhcccc--hhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHH
Q 000113 1666 SEAEEHLEEQKEVI---TGLEKEILHRTSED--KKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWV 1740 (2159)
Q Consensus 1666 ~~~e~~L~e~~~vi---e~LE~eil~l~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~ 1740 (2159)
+.++|.-+.++- ..++..=-+..+.. -+....+..+-.+.-.+..+...+-+.++.++..+..+-.++|..++
T Consensus 79 --LqeELr~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~e 156 (775)
T PF10174_consen 79 --LQEELRAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADE 156 (775)
T ss_pred --HHHHHHHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333341111111 11111111111100 00011112222234445666778888888888888888888999999
Q ss_pred HHHhhHHHHH--------------HHHHhhhhhHHHHH--------------HHHHH-------------HHhhhhhhhh
Q 000113 1741 EICSLNDKLA--------------MAYALADENEAIAV--------------EARQE-------------LEASKLYAEQ 1779 (2159)
Q Consensus 1741 e~~~l~~kle--------------~a~a~a~e~eaia~--------------ea~q~-------------ae~~k~yae~ 1779 (2159)
+|-.|.+.|+ |.-. ..+-|+... .+|+. .++.-.--+.
T Consensus 157 ei~kL~e~L~~~g~~~~~~~~~~~~~~~-~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~ 235 (775)
T PF10174_consen 157 EIEKLQEMLQSKGLSAEAEEEDNEALRR-IREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEE 235 (775)
T ss_pred HHHHHHHHHhhcCCcccchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHH
Confidence 9999988884 1111 112222221 11110 0122223367
Q ss_pred hhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhh--HHHHHHHHHHhhhhccccccccccccccCCC-chhh
Q 000113 1780 KEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDS--LELEIQALRRRLSTVQNFSDIVDSENINAGH-TEDQ 1856 (2159)
Q Consensus 1780 keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~--le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~-~~~~ 1856 (2159)
|+..++-||+.++.||.-|..|...+..... .|.++.++= -..+.-+.+.+|-.+. .+++.-. ..-.
T Consensus 236 Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~--~r~~~~k~le~~~s~~~~mK~k~d~~~--------~eL~rk~~E~~~ 305 (775)
T PF10174_consen 236 KDTKIASLERMLRDLEDEIYRLRSRGELSEA--DRDRLDKQLEVYKSHSLAMKSKMDRLK--------LELSRKKSELEA 305 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccc--chHHHHHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 8888888888888888888888777765554 244442221 0000011111111111 0000000 0112
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccc
Q 000113 1857 MSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQTNLSNTTAAAA 1936 (2159)
Q Consensus 1857 ~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~~~~~~~~~~ 1936 (2159)
+.-.+.+......+.+.||.+|+.++..++.+...+-.-+-.|-.--|.--..+-+|-+.++.|-++.-.-
T Consensus 306 ~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~--------- 376 (775)
T PF10174_consen 306 LQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRL--------- 376 (775)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 23456667778888899999999999999999999988888888888888888888888888887754332
Q ss_pred cccccccccccccCCCCCCcchhhHHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhh-hhcchhHHHHh
Q 000113 1937 PAQDKIEKSSTRLRGSSSPFRCIASVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAA-AESMTHDVIRD 2015 (2159)
Q Consensus 1937 ~~~~k~EK~s~rtRGS~SPFrCI~glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa-~eSMTHDVIRd 2015 (2159)
...+++.- =|.--|+.++++.+-+|+-||....-+.+.+-.++.||.+ +|+-+-| .
T Consensus 377 --~~Ei~~l~------------------d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~---~ 433 (775)
T PF10174_consen 377 --QGEIEDLR------------------DMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNED---E 433 (775)
T ss_pred --HHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchH---H
Confidence 00011100 0444578899999999999999999999999999999995 2222211 1
Q ss_pred hhcccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh------------------
Q 000113 2016 LLGVKLDMTNYANLIDQEHVQKLVVAAQQQTQELLAKEQIILNLRKRIEDLIEEHESCTSIL------------------ 2077 (2159)
Q Consensus 2016 LLGVKldmTnyA~liD~~q~~kl~e~a~~~~~e~~~ke~e~~~Lk~q~~~lieEr~s~~~ei------------------ 2077 (2159)
++ .+|+- .+.|.+.++.-+.... ....+.+-.++..+++++.++-.+-++.=.++
T Consensus 434 ~~-~~lEe----a~~eker~~e~l~e~r--~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~ 506 (775)
T PF10174_consen 434 AL-ETLEE----ALREKERLQERLEEQR--ERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLA 506 (775)
T ss_pred HH-HHHHH----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHh
Confidence 11 22222 4455555555554432 22223444556666666666655544444444
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000113 2078 ---KQREADILAAQINVEQLRERDQLLSAQN 2105 (2159)
Q Consensus 2078 ---~~k~ad~~aaqi~~eqL~qrdqlL~aqn 2105 (2159)
..+.++|--++|.+|+.+.+=-=|.++-
T Consensus 507 s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql 537 (775)
T PF10174_consen 507 SSQEKKDSEIERLEIELEKKREKHEKLEKQL 537 (775)
T ss_pred hccchhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444666666788887766544343333
No 41
>PRK03918 chromosome segregation protein; Provisional
Probab=98.42 E-value=0.0085 Score=80.43 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhh
Q 000113 1869 QEAHHRIQLLEREKEEQNEEIKRCKDYLSEV 1899 (2159)
Q Consensus 1869 ~~a~~~i~~l~~~~~~k~~ei~q~k~~isel 1899 (2159)
......|..|+.++.....+++.++.-+..+
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777778888877777777777766654
No 42
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.42 E-value=0.0095 Score=81.51 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=13.4
Q ss_pred hhhhHHhHhHHHHHHHHhhhcchhhhhhhhh
Q 000113 1972 QELSAATLRIQKLEALAASRQKEVCMLNTRL 2002 (2159)
Q Consensus 1972 qEls~ArlRIeELE~laa~rQkEi~~LnarL 2002 (2159)
.++.....+|++|+.-...-++++.-+...+
T Consensus 674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l 704 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRL 704 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555444444343333333333
No 43
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.40 E-value=0.05 Score=76.75 Aligned_cols=491 Identities=15% Similarity=0.176 Sum_probs=256.3
Q ss_pred hhhHHHHhhHHHHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhh---c--
Q 000113 1558 LSLKKELQRKEVLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLT---D-- 1632 (2159)
Q Consensus 1558 ~~l~~El~RK~~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~---d-- 1632 (2159)
..+..++.-|..-+..|...+..|++--+ .-....+..+-|.-++.||..|..+|..++..+..--..+- +
T Consensus 497 ~~~~~~i~~~~~~~~~le~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1311)
T TIGR00606 497 ETLKKEVKSLQNEKADLDRKLRKLDQEME----QLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNK 572 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 35667788888888888888888887654 33445566777888999999999999999988754322221 1
Q ss_pred --hhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhc
Q 000113 1633 --TENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIV 1710 (2159)
Q Consensus 1633 --~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~ 1710 (2159)
...++...+..+..+..+-+.+...+..+-.....+..+|....+-+......|..--.. ...-..++..-++++..
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~-~~~~~~L~~~~~~l~~~ 651 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGS-QDEESDLERLKEEIEKS 651 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHH
Confidence 122333366777888888888888888888888888888888888888888888721111 01111133334566666
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhh----------HHHHHhhHHHHHHHHHh-----------hhhhHHHHHHHHHH
Q 000113 1711 TSDRDKLCEEVESVEEELRKVSKERDKL----------WVEICSLNDKLAMAYAL-----------ADENEAIAVEARQE 1769 (2159)
Q Consensus 1711 ~~~~~~~~~~v~~l~~~l~~~~~Erd~l----------~~e~~~l~~kle~a~a~-----------a~e~eaia~ea~q~ 1769 (2159)
..|.+...........=+...+++.+.+ .+++..+..+|+--..- .++.+...-..++.
T Consensus 652 ~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l 731 (1311)
T TIGR00606 652 SKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGL 731 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777766677766666665443333 33434444444422222 11111111122222
Q ss_pred HHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhH-------------HHHHHHHHHhhhhc
Q 000113 1770 LEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSL-------------ELEIQALRRRLSTV 1836 (2159)
Q Consensus 1770 ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~l-------------e~e~~~~~~~~~~v 1836 (2159)
....-.|-..++.++.-|+.-+.+++..+.-++.++..++..++....-.+++ ..++..++.++...
T Consensus 732 ~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l 811 (1311)
T TIGR00606 732 APGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQ 811 (1311)
T ss_pred hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222233333334444444444444444444444433333333333333222 33444444444433
Q ss_pred cccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 000113 1837 QNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKT 1916 (2159)
Q Consensus 1837 ~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~ 1916 (2159)
+.--....+ ..+.+++...+......+..++..|..+..+......+|.+++.=|.++.=.--.-+...+ +...
T Consensus 812 ~~~l~~~~~-----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~-~r~~ 885 (1311)
T TIGR00606 812 AAKLQGSDL-----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-RRQQ 885 (1311)
T ss_pred HHHhccccc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 321110001 1244566677777777777777777777777777777887775555554333222222333 3333
Q ss_pred HHHHHHHhhcCCCCcccccccccccccccccccCCCCCCcchhhHHHHHhhhhhhhhhhHHhHhHHHHHHH----Hhhhc
Q 000113 1917 LEAMIREMQTNLSNTTAAAAPAQDKIEKSSTRLRGSSSPFRCIASVVQQMNSEKDQELSAATLRIQKLEAL----AASRQ 1992 (2159)
Q Consensus 1917 lEaM~~~~k~~~~~~~~~~~~~~~k~EK~s~rtRGS~SPFrCI~glvQQmn~EKDqEls~ArlRIeELE~l----aa~rQ 1992 (2159)
||.=+.+.+.+ |..+..-| .+.+++|.-....++.+++- ...++
T Consensus 886 le~~L~el~~e-------------------------------l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1311)
T TIGR00606 886 FEEQLVELSTE-------------------------------VQSLIREI-KDAKEQDSPLETFLEKDQQEKEELISSKE 933 (1311)
T ss_pred HHHHHHHHHHH-------------------------------HHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44333333332 00000000 11233333333333222211 11111
Q ss_pred chhhhhhhhhhhhhcchhHHHHhhhcccccccchhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 000113 1993 KEVCMLNTRLAAAESMTHDVIRDLLGVKLDMTNYANLIDQEHVQKLVVAAQ-------QQTQELLAKEQIILNLRKRIED 2065 (2159)
Q Consensus 1993 kEi~~LnarLAa~eSMTHDVIRdLLGVKldmTnyA~liD~~q~~kl~e~a~-------~~~~e~~~ke~e~~~Lk~q~~~ 2065 (2159)
.+.=-+..++ .+-...++++-+.-=+|..|...--..++..+-.+.. .-..+-.....++..|++.+++
T Consensus 934 ~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~ 1009 (1311)
T TIGR00606 934 TSNKKAQDKV----NDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDT 1009 (1311)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1222333444445556666765444444444333222 1112233334567778888888
Q ss_pred HHHHhhhhhHHhhhh--hHHHHHHHHHHHHHH
Q 000113 2066 LIEEHESCTSILKQR--EADILAAQINVEQLR 2095 (2159)
Q Consensus 2066 lieEr~s~~~ei~~k--~ad~~aaqi~~eqL~ 2095 (2159)
+=.+++..-+.|+.+ +.++...+..+..|.
T Consensus 1010 ~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~ 1041 (1311)
T TIGR00606 1010 QKIQERWLQDNLTLRKRENELKEVEEELKQHL 1041 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888 666666666666554
No 44
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.32 E-value=6.3e-09 Score=132.27 Aligned_cols=257 Identities=26% Similarity=0.271 Sum_probs=154.2
Q ss_pred CCcCCCCceEEEEEeCCCCChhcccCCcee-EEecCC-CceEEEc-----CCCCceeEeceecCCCCChHHHHHhhchhH
Q 000113 155 PLFWKDHNVQVLIRIRPLSNIEKVSQGYVR-CLKQDT-AQTLVWL-----GHPETRFTFDHIACEMISQEKLFRVAGLPM 227 (2159)
Q Consensus 155 ps~~~d~nVrV~VRVRPls~~E~~s~g~~~-cv~~~s-~~tiv~~-----g~p~~~FtFD~VFde~aSQEeVFe~v~~PL 227 (2159)
++.....+++|+|+|+|.+........... .-+..+ .+.+... ..+...|.||.+|.+...+..+|.... .+
T Consensus 299 ~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~ 377 (568)
T COG5059 299 DSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQS-QL 377 (568)
T ss_pred HhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHHH-hh
Confidence 333445599999999998754211100000 000000 0111111 112235999999999999999998654 67
Q ss_pred HHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeec
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYN 307 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYN 307 (2159)
++..+.| +|+||++++|+++||.-. ..|+.+-.+...|..+... ....|.|...+-|.+||-
T Consensus 378 ~~~~~~~----~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~ 439 (568)
T COG5059 378 SQSSLSG----IFAYMQSLKKETETLKSR----------IDLIMKSIISGTFERKKLL----KEEGWKYKSTLQFLRIEI 439 (568)
T ss_pred hhhhhhh----HHHHHhhhhhhhhcccch----------hhhhhhhhhhhhhhhhhhh----hhhHHHHHHHHHHHHHHH
Confidence 8888888 999999999999999542 3456666667777665432 233455555566677772
Q ss_pred ccccccCCCCC-CCcee-eecC-CCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeee
Q 000113 308 EQITDLLEPSS-TNLQL-REDL-KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHW 384 (2159)
Q Consensus 308 EkI~DLL~p~s-~~L~I-rED~-k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~ 384 (2159)
....++..... ..... .... -+...+..++. ....-.+..... .....+..+.+.+|..++|+|++|+.......
T Consensus 440 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 517 (568)
T COG5059 440 DRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSS-IPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSN 517 (568)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhh-cchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchh
Confidence 22222221111 10000 0000 00000000000 001111111111 45778889999999999999999986664321
Q ss_pred cCCCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHH
Q 000113 385 EKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSL 438 (2159)
Q Consensus 385 ~~~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~AL 438 (2159)
.. .... . +++|||||+||. .+...|.++++..++|++|..+|.+|.++
T Consensus 518 ~~--~~~~--~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~ 565 (568)
T COG5059 518 SS--TKEL--S-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHAL 565 (568)
T ss_pred hh--hHHH--H-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhc
Confidence 11 1111 1 799999999999 99999999999999999999999999876
No 45
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.17 E-value=0.072 Score=73.21 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=25.0
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHH
Q 000113 1707 LRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMA 1752 (2159)
Q Consensus 1707 ~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a 1752 (2159)
+..+.....++...++.++..+..+..+...+..++..++.+++-.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l 341 (1164)
T TIGR02169 296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555555566666666666666666665555555443
No 46
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.16 E-value=0.12 Score=72.50 Aligned_cols=52 Identities=29% Similarity=0.324 Sum_probs=37.6
Q ss_pred hhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhh
Q 000113 1580 LLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLT 1631 (2159)
Q Consensus 1580 LLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~ 1631 (2159)
-|-|=|+.....+...++....|..++.-|+....-+.++=.+...|+.+-.
T Consensus 159 ~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~ 210 (1163)
T COG1196 159 KLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAE 210 (1163)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777788888888888888888888777777776667666655443
No 47
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.10 E-value=0.077 Score=70.97 Aligned_cols=185 Identities=24% Similarity=0.272 Sum_probs=114.0
Q ss_pred hhHHHHHHhHHHHhhhhchhhHHHHhhhhhhH-HhhhhHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHH
Q 000113 1615 QLDNLLLQHEKLEASLTDTENALVIAKGTIDT-LSDQNADLRVLLKDLYLKKSEAEEHLEEQK-------EVITGLEKEI 1686 (2159)
Q Consensus 1615 ~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~-ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~-------~vie~LE~ei 1686 (2159)
+|.++-.-+..|...|--+..-|-.+..+|++ .|-|=.--|.+-++.-+...-+.++|.... .-+..|..|+
T Consensus 4 ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL 83 (775)
T PF10174_consen 4 QLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL 83 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56777777888888888877777777788877 355555556666666666676777764332 3344555555
Q ss_pred hhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhh----hhHHH
Q 000113 1687 LHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALAD----ENEAI 1762 (2159)
Q Consensus 1687 l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~----e~eai 1762 (2159)
....- +..+...+.-...+.+.+.. ++-.+.++..+-.|||.++.|+..|.++++.++.-.+ +..+.
T Consensus 84 -r~q~e-------~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~ 154 (775)
T PF10174_consen 84 -RAQRE-------LNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKA 154 (775)
T ss_pred -HHhhH-------HHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 23334444444556666666 7778889999999999999999999999998876543 33333
Q ss_pred HHHHHHHHHhh--h-hhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhh
Q 000113 1763 AVEARQELEAS--K-LYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMN 1809 (2159)
Q Consensus 1763 a~ea~q~ae~~--k-~yae~keeevk~le~sveele~tin~LE~kV~~~k 1809 (2159)
--+.++-.|.= | .-| ...++--..=+.+.++|.+++-|+.....-.
T Consensus 155 ~eei~kL~e~L~~~g~~~-~~~~~~~~~~~~~~~~e~~~~~le~lle~~e 203 (775)
T PF10174_consen 155 DEEIEKLQEMLQSKGLSA-EAEEEDNEALRRIREAEARIMRLESLLERKE 203 (775)
T ss_pred HHHHHHHHHHHhhcCCcc-cchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333310 0 000 1122222333467888888888776444433
No 48
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.95 E-value=0.013 Score=74.89 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 000113 1860 KLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQTNLSNTTA 1933 (2159)
Q Consensus 1860 ~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~~~~~~~ 1933 (2159)
++-+.-++|.+-+.-++++.+|....-.|.+-+++||--|-.--+--|..|.-- .+|+-+..+..+|.+.
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 480 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWKE----AAALTEDATAASPPSC 480 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc----cccccCccccccCCCC
Confidence 455556667888888999999999999999999999998887777777665432 2334444455455554
No 49
>PRK01156 chromosome segregation protein; Provisional
Probab=97.77 E-value=0.46 Score=64.78 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=15.6
Q ss_pred HHHHHHHHhHHHHHhHHHHHHhHhhhhhh
Q 000113 1782 EEVKILEHSIEELEHTVNALEKKVYEMNG 1810 (2159)
Q Consensus 1782 eevk~le~sveele~tin~LE~kV~~~k~ 1810 (2159)
.+.+-|...++.++.++..+++.+..++.
T Consensus 363 ~~~~~l~~~l~~~~~~~~~~~~~~~~l~~ 391 (895)
T PRK01156 363 MDYNSYLKSIESLKKKIEEYSKNIERMSA 391 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34555555555555555555555444444
No 50
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.61 E-value=1.2 Score=64.85 Aligned_cols=248 Identities=25% Similarity=0.305 Sum_probs=135.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHH
Q 000113 1590 DIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAE 1669 (2159)
Q Consensus 1590 D~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e 1669 (2159)
|..+...+.-.-+..|+.|++-=...++.+-...+.+|.++.+....+ ..+..+|.-|-..=..+-+...-++
T Consensus 1657 e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i-------~~~~~~~s~l~~~KrklE~~i~~l~ 1729 (1930)
T KOG0161|consen 1657 ELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERV-------NELNAQNSSLTAEKRKLEAEIAQLQ 1729 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHhhcccchhhHHHHHHHHHHHHH
Confidence 444444444445555555555555555555555555555444433222 2222222222222222333333344
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHH
Q 000113 1670 EHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKL 1749 (2159)
Q Consensus 1670 ~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kl 1749 (2159)
++|+|...-.+..+ +-.|..+-|-.++..-+..=++..-++...|..|+.++-.|.-||
T Consensus 1730 ~elee~~~~~~~~~---------------------Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL 1788 (1930)
T KOG0161|consen 1730 SELEEEQSELRAAE---------------------ERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRL 1788 (1930)
T ss_pred HHHHHHHHHHHhhH---------------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333332222 233444555677777777778888889999999999999999999
Q ss_pred HHHHHhhhhhHH--HH-HHHHHHHHhhhhhhhhh--hHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHH
Q 000113 1750 AMAYALADENEA--IA-VEARQELEASKLYAEQK--EEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLEL 1824 (2159)
Q Consensus 1750 e~a~a~a~e~ea--ia-~ea~q~ae~~k~yae~k--eeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~ 1824 (2159)
.-|.+-|-=.=. |+ .|||=-.=..-.-.|++ -+.+|.+ --.|.+|.-|+-+|..=+.=.+|.+-..+-+..
T Consensus 1789 ~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~----rk~er~vkEl~~q~eed~k~~~~~q~~~dkl~~ 1864 (1930)
T KOG0161|consen 1789 DEAEQAALKGGKKQIAKLEARIRELESELEGEQRRKAEAIKGL----RKKERRVKELQFQVEEDKKNIERLQDLVDKLQA 1864 (1930)
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHH----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 877655432211 22 24443211111222221 1222322 335667777777888888899999999999988
Q ss_pred HHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000113 1825 EIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKE 1883 (2159)
Q Consensus 1825 e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~ 1883 (2159)
-+..+|.|+.-.+.... - .....|.+ ..+|.+|..+-..+++++.
T Consensus 1865 k~~~~krQleeaE~~~~----~-------~~~k~R~~---q~ele~a~erad~~e~~~~ 1909 (1930)
T KOG0161|consen 1865 KIKQYKRQLEEAEEEAN----Q-------NLSKYRKL---QRELEEAEERADTAESELN 1909 (1930)
T ss_pred HHHHHHHhHHHHHHHHH----H-------HHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 88888888877763321 0 11112333 4566666666666665554
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.54 E-value=0.0068 Score=79.98 Aligned_cols=204 Identities=16% Similarity=0.266 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHH
Q 000113 1651 NADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRK 1730 (2159)
Q Consensus 1651 N~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~ 1730 (2159)
=+|||.+|.-+...-..+..+|...+.=.+.|+..+.+|+.+ ..+=..+++.++..|.+
T Consensus 441 E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~a---------------------Rq~DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 441 EQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQA---------------------RQQDKQSLQQLEKRLAE 499 (697)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 356777776665555667777777777777888888888777 55566667777777777
Q ss_pred HhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHH----HHHH-HHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHh
Q 000113 1731 VSKERDKLWVEICSLNDKLAMAYALADENEAIA----VEAR-QELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKV 1805 (2159)
Q Consensus 1731 ~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia----~ea~-q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV 1805 (2159)
-..-|-.|+.++...+..--. ++|.=|.+ .-.| --+|+=|.-..+=|.|+|-|.+-.-..|..+.+||.++
T Consensus 500 E~~~R~~lEkQL~eErk~r~~----ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 500 ERRQRASLEKQLQEERKARKE----EEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhH----HHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776655432221 11111111 1111 12344444456667788888888777777777777755
Q ss_pred hhhhhhHHhhhhh-Hh------hHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 000113 1806 YEMNGEVERHHLI-RD------SLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLL 1878 (2159)
Q Consensus 1806 ~~~k~e~~r~r~~-r~------~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l 1878 (2159)
+-.|.+ ++ .|-..|+++++.=...||-=. .++-++=.| --+|-+|+++|+++
T Consensus 576 -------~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs-----------aEtriKldL---fsaLg~akrq~ei~ 634 (697)
T PF09726_consen 576 -------QELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS-----------AETRIKLDL---FSALGDAKRQLEIA 634 (697)
T ss_pred -------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh-----------HHHHHHHHH---HHHHHHHHHHHHHH
Confidence 333443 33 444566777766555553311 133444444 77899999999999
Q ss_pred HHHhhhhHHHHHHHHhhhhhhh
Q 000113 1879 EREKEEQNEEIKRCKDYLSEVV 1900 (2159)
Q Consensus 1879 ~~~~~~k~~ei~q~k~~isel~ 1900 (2159)
+..+-.||.||..+|..|+||.
T Consensus 635 ~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 635 QGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 52
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.43 E-value=0.28 Score=63.38 Aligned_cols=263 Identities=21% Similarity=0.279 Sum_probs=163.6
Q ss_pred HHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhh
Q 000113 1624 EKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESI 1703 (2159)
Q Consensus 1624 ~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~ 1703 (2159)
..|..++.+....|...++....|..++.++....+.+..++..+..++++...-|..||.+|-.|+.-
T Consensus 167 ~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk----------- 235 (546)
T PF07888_consen 167 EQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQK----------- 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 445556666677777788899999999999999999999999999999999999999999999988776
Q ss_pred hhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHH
Q 000113 1704 AEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEE 1783 (2159)
Q Consensus 1704 ~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keee 1783 (2159)
. ..-+.+.+.++++..++.++..++. .+|.-..+--...+.- +..+..|
T Consensus 236 ----------~----~E~e~~~~~lk~~~~elEq~~~eLk---~rLk~~~~~~~~~~~~--------------~~~~~~e 284 (546)
T PF07888_consen 236 ----------E----KEQEKELDKLKELKAELEQLEAELK---QRLKETVVQLKQEETQ--------------AQQLQQE 284 (546)
T ss_pred ----------H----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhh--------------hhhHHHH
Confidence 1 1112222344444444444443332 2332111111100000 1233344
Q ss_pred HHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHH
Q 000113 1784 VKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQD 1863 (2159)
Q Consensus 1784 vk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~ 1863 (2159)
+..|-.-..-++.++.+-+.+|--|..|..--...|+-.-++||..|-++- ++.-+|.+
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~a---------------------ql~~qLad 343 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAA---------------------QLKLQLAD 343 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---------------------HHHHHHHH
Confidence 445555566677888888999999999998888999998999999884432 33334444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccc
Q 000113 1864 RLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQTNLSNTTAAAAPAQDKIE 1943 (2159)
Q Consensus 1864 ~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~~~~~~~~~~~~~~k~E 1943 (2159)
-..+|.+++.+-. .+...-...+...|+-|..|..--+.-+..||++|++=..+-.++
T Consensus 344 ~~l~lke~~~q~~---qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql------------------- 401 (546)
T PF07888_consen 344 ASLELKEGRSQWA---QEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQL------------------- 401 (546)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 4444444332211 111111122222344455555555555678999998776666544
Q ss_pred ccccccCCCCCCcchhhHHHHHhhhhhhhh---hhHHhHhHHHHHHHHhhhcch
Q 000113 1944 KSSTRLRGSSSPFRCIASVVQQMNSEKDQE---LSAATLRIQKLEALAASRQKE 1994 (2159)
Q Consensus 1944 K~s~rtRGS~SPFrCI~glvQQmn~EKDqE---ls~ArlRIeELE~laa~rQkE 1994 (2159)
+.|+|.- ||-+|..|.||.+-+..-|||
T Consensus 402 -----------------------~ke~D~n~vqlsE~~rel~Elks~lrv~qkE 432 (546)
T PF07888_consen 402 -----------------------GKEKDCNRVQLSENRRELQELKSSLRVAQKE 432 (546)
T ss_pred -----------------------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 788888888888866555554
No 53
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.42 E-value=0.89 Score=59.06 Aligned_cols=303 Identities=22% Similarity=0.269 Sum_probs=177.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHH
Q 000113 1591 IKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEE 1670 (2159)
Q Consensus 1591 ~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~ 1670 (2159)
.+..-...+..|..+..||..--.+++.++.....=..+-.+...+.-......+.|+.|-..|+..|...-....++++
T Consensus 121 ~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAee 200 (522)
T PF05701_consen 121 AREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEE 200 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999888888888776655566666666666557778888888888888888876665555554
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHH-HH
Q 000113 1671 HLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLND-KL 1749 (2159)
Q Consensus 1671 ~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~-kl 1749 (2159)
++..+....+.++..+... .+..-+.+.-+..+. +..++|+.+|...+.+=..|+.|+-...+ ++
T Consensus 201 ---e~~~~~~~~~~~~~~~~~~-------leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l 266 (522)
T PF05701_consen 201 ---ERIEIAAEREQDAEEWEKE-------LEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKL 266 (522)
T ss_pred ---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443334333333332 111112222221111 55666777777666555555555444443 11
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHH-------HHHhHHHHHHhHhhhhhhhHHhhh------
Q 000113 1750 AMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIE-------ELEHTVNALEKKVYEMNGEVERHH------ 1816 (2159)
Q Consensus 1750 e~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sve-------ele~tin~LE~kV~~~k~e~~r~r------ 1816 (2159)
.. ++ +++.....-+.+-.--..|+.-...+++ -|-.+|..|..++...|.|..+-+
T Consensus 267 ~~--------~~---~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a 335 (522)
T PF05701_consen 267 EE--------EA---EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEA 335 (522)
T ss_pred hh--------hH---HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 00 2222222222222222222222222222 233333444444444455544432
Q ss_pred -hhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 000113 1817 -LIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDY 1895 (2159)
Q Consensus 1817 -~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~ 1895 (2159)
..=.+|+.+|..+|.++..+..-.. ......+.|...|+.-..+...|+........++.+-..||.+.|..
T Consensus 336 ~~~v~~L~~eL~~~r~eLea~~~~e~-------~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~ 408 (522)
T PF05701_consen 336 SSEVSSLEAELNKTRSELEAAKAEEE-------KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAA 408 (522)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHhhhc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223899999999999988874432 11124567888888888888999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH-HHhhc
Q 000113 1896 LSEVVLHSEAQASQYQQKYKTLEAMI-REMQT 1926 (2159)
Q Consensus 1896 isel~lh~eaqa~~y~~k~k~lEaM~-~~~k~ 1926 (2159)
|.....--++.-.++-. .|+=|+++ .++|.
T Consensus 409 i~t~E~rL~aa~ke~ea-aKasEa~Ala~ik~ 439 (522)
T PF05701_consen 409 IKTAEERLEAALKEAEA-AKASEALALAEIKA 439 (522)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 98877665554444433 44444444 44443
No 54
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.37 E-value=1.9 Score=61.66 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=43.1
Q ss_pred ccCCCCchhhhHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHH
Q 000113 1037 CLFPQFNVEVTENVGRAAKVCIEKDETILLLQKSLEEAQKMVVEMKEKCISLKGA 1091 (2159)
Q Consensus 1037 ~SFP~~~~wIsEhV~~a~r~~iEKE~~I~~Lq~~LEdA~~m~~dme~kL~SLrgA 1091 (2159)
.-||..-.|+.+-.......+.+++.-+..++..+.++..-+.+...+.+.|...
T Consensus 294 ~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e 348 (1311)
T TIGR00606 294 KVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVE 348 (1311)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999888888888888888888888888888877777766666666544
No 55
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.15 E-value=1.8 Score=57.35 Aligned_cols=398 Identities=22% Similarity=0.250 Sum_probs=197.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhh-
Q 000113 1589 KDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSE- 1667 (2159)
Q Consensus 1589 kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~- 1667 (2159)
|.-+-++|.+-+-+..+++||..|+.++--+.. .|-++..-|+--...+.++-.+|+++...++..+.+-.+
T Consensus 137 ke~etelE~~~srlh~le~eLsAk~~eIf~~~~-------~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~ 209 (1265)
T KOG0976|consen 137 KENEIEIENLNSRLHKLEDELSAKAHDIFMIGE-------DLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKED 209 (1265)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH-------HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777778888888887766533221 223333333334445555555555555555444333222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHH----HHhhhhhh
Q 000113 1668 ------AEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELR----KVSKERDK 1737 (2159)
Q Consensus 1668 ------~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~----~~~~Erd~ 1737 (2159)
.--++-+--+.+.-.=+|.-.|++- +..+|.+..-+--++-...|..-++..|+.-.++|+ -+.+|.-+
T Consensus 210 ~~~nD~~sle~~~~q~~tq~vl~ev~QLss~-~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSq 288 (1265)
T KOG0976|consen 210 LIEKDQKSLELHKDQENTQKVLKEVMQLSSQ-KQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQ 288 (1265)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHh-HhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 2222222222232333344555554 555555433333444444555555555544444443 23444444
Q ss_pred hHHHHHhhHHHHHH-----HHHhhhhhHHHHHHHHHHH--HhhhhhhhhhhHHHHHHH--HhHHHHHhHHHHHHhHhhhh
Q 000113 1738 LWVEICSLNDKLAM-----AYALADENEAIAVEARQEL--EASKLYAEQKEEEVKILE--HSIEELEHTVNALEKKVYEM 1808 (2159)
Q Consensus 1738 l~~e~~~l~~kle~-----a~a~a~e~eaia~ea~q~a--e~~k~yae~keeevk~le--~sveele~tin~LE~kV~~~ 1808 (2159)
-..=|..+++-|+- |.|.-+= .+|+|.. |--|.-++--+=--.+|| |-+|-+-...|-||+|-+..
T Consensus 289 keelVk~~qeeLd~lkqt~t~a~gds-----eqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~a 363 (1265)
T KOG0976|consen 289 KEELVKELQEELDTLKQTRTRADGDS-----EQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMA 363 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 44444444444431 2222221 2233311 111111211111112222 45666677778888888877
Q ss_pred hhhHHhhhhhHhhHHHHHHHHHH-------hhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000113 1809 NGEVERHHLIRDSLELEIQALRR-------RLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLERE 1881 (2159)
Q Consensus 1809 k~e~~r~r~~r~~le~e~~~~~~-------~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~ 1881 (2159)
-.-|++.+=..+..|-|+|.|.. ||-..-|- ..-..+.+|....-.++|++|..+...+..+
T Consensus 364 l~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~-----------if~~e~~~~dhe~~kneL~~a~ekld~mgth 432 (1265)
T KOG0976|consen 364 LMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNH-----------IFRLEQGKKDHEAAKNELQEALEKLDLMGTH 432 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhhhhhccchhHHHHHHHHHHHHHHHHHhHH
Confidence 77777766666655555554432 33332221 1123466788888888999998887777666
Q ss_pred hhhhHH------------------HHHHHHhhhhhhhh---hhHHH-----------HHHHHHHHHHHHHHHHH---hhc
Q 000113 1882 KEEQNE------------------EIKRCKDYLSEVVL---HSEAQ-----------ASQYQQKYKTLEAMIRE---MQT 1926 (2159)
Q Consensus 1882 ~~~k~~------------------ei~q~k~~isel~l---h~eaq-----------a~~y~~k~k~lEaM~~~---~k~ 1926 (2159)
...-|. -|.||.+-|.-|-- --|-| |-.-+|+ |-.|-|-++ +.-
T Consensus 433 l~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqa-kkiefmkEeiQethl 511 (1265)
T KOG0976|consen 433 LSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQA-KKIEFMKEEIQETHL 511 (1265)
T ss_pred HHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 554443 36666665543310 00000 0001111 112222222 111
Q ss_pred CCCCcccccccccccccccccccCCCCCCcchhhHHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhh
Q 000113 1927 NLSNTTAAAAPAQDKIEKSSTRLRGSSSPFRCIASVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAE 2006 (2159)
Q Consensus 1927 ~~~~~~~~~~~~~~k~EK~s~rtRGS~SPFrCI~glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~e 2006 (2159)
|- -.-.++-+-|+-|+- |-- .+-.|-||-.|.--|.|
T Consensus 512 dy----------R~els~lA~r~ag~h-~ad---------ssqrdselrsAkktIqe----------------------- 548 (1265)
T KOG0976|consen 512 DY----------RSELSELAHRKAGDH-PAD---------SSQRDSELRSAKKTIQE----------------------- 548 (1265)
T ss_pred HH----------HHHHHHHhhccCCCC-CCC---------CCcccHHHHHHHHHHHh-----------------------
Confidence 10 000111111111211 000 03356666666666654
Q ss_pred cchhHHHHhhhcccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhH
Q 000113 2007 SMTHDVIRDLLGVKLDMTNYANLIDQEHVQKLVVAAQQQTQELLAKEQIILNLRKRIEDLIEEHE-SCTS 2075 (2159)
Q Consensus 2007 SMTHDVIRdLLGVKldmTnyA~liD~~q~~kl~e~a~~~~~e~~~ke~e~~~Lk~q~~~lieEr~-s~~~ 2075 (2159)
.--|+..+|-|+....|+..++..-+.-+.+++...-+-|+||- .|+.
T Consensus 549 ---------------------vkadn~k~q~lL~evrq~q~k~leenv~lRkgma~a~~kIee~kr~w~n 597 (1265)
T KOG0976|consen 549 ---------------------VKADNPKAQSLLAEVRQRQKKSLEENVFLRKGMARAHHKIEERKRVWLN 597 (1265)
T ss_pred ---------------------ccccCHHHHHHhhchhhhhhhccChHHHHHHHHHHHHhhhHHHHhhhhh
Confidence 23468888999999999999988887788888888888898885 4553
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.11 E-value=0.57 Score=61.28 Aligned_cols=334 Identities=19% Similarity=0.275 Sum_probs=185.8
Q ss_pred cchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHH------------hhhhh
Q 000113 1577 DFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVI------------AKGTI 1644 (2159)
Q Consensus 1577 D~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~------------~~~~~ 1644 (2159)
.+.=|-+|-. +.+.+++++-.--..++..|--+++.+-. .-..||.+|...+.-... |++-+
T Consensus 127 ~l~~l~~~e~---~nr~~v~~l~~~y~~~rk~ll~~~~~~G~---a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l 200 (569)
T PRK04778 127 ELQELLESEE---KNREEVEQLKDLYRELRKSLLANRFSFGP---ALDELEKQLENLEEEFSQFVELTESGDYVEAREIL 200 (569)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCccccc---hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3344555544 77788888888999999999999999888 456788888877766554 99999
Q ss_pred hHHhhhhHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHH
Q 000113 1645 DTLSDQNADLRVLLKDLYLKKSE----AEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEE 1720 (2159)
Q Consensus 1645 ~~ls~eN~eLr~~l~~~~~~k~~----~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1720 (2159)
..+..+-..|...++++=.--.. .=++|+|=+.-.+.|..+=..+.-. +|...+..+..........
T Consensus 201 ~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~---------~i~~~i~~l~~~i~~~~~~ 271 (569)
T PRK04778 201 DQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHL---------DIEKEIQDLKEQIDENLAL 271 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCC---------ChHHHHHHHHHHHHHHHHH
Confidence 99999999999999987222222 3367777777777776665655544 2223333332223333333
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHH
Q 000113 1721 VESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNA 1800 (2159)
Q Consensus 1721 v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~ 1800 (2159)
+..+ +|+.+...-+.+.++|-.|-+.|+..+ .|++.. +...+.+...+..+......
T Consensus 272 l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~-----------~A~~~v----------ek~~~~l~~~l~~~~e~~~~ 328 (569)
T PRK04778 272 LEEL--DLDEAEEKNEEIQERIDQLYDILEREV-----------KARKYV----------EKNSDTLPDFLEHAKEQNKE 328 (569)
T ss_pred HHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH----------HHhhHHHHHHHHHHHHHHHH
Confidence 3333 455666666666666666666665422 233322 11222233333333333333
Q ss_pred HHhHhhhhh-------hhHHhhhhhHhhHHHHHHHHHHhhhhccc-ccccccc-ccccCCCchhhhhhhHHHHHHHHHHH
Q 000113 1801 LEKKVYEMN-------GEVERHHLIRDSLELEIQALRRRLSTVQN-FSDIVDS-ENINAGHTEDQMSRKLQDRLLQLQEA 1871 (2159)
Q Consensus 1801 LE~kV~~~k-------~e~~r~r~~r~~le~e~~~~~~~~~~v~n-~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~l~~a 1871 (2159)
|-.+...++ +|+++ ...++.+++.+..++..+.. +.....+ ..+- ..-..+..++.+...+..+.
T Consensus 329 l~~Ei~~l~~sY~l~~~e~~~----~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~--e~leel~e~leeie~eq~ei 402 (569)
T PRK04778 329 LKEEIDRVKQSYTLNESELES----VRQLEKQLESLEKQYDEITERIAEQEIAYSELQ--EELEEILKQLEEIEKEQEKL 402 (569)
T ss_pred HHHHHHHHHHccccCchhHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 333222222 12222 22334444444444332211 1000000 0000 01223344455555555556
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHH-----HHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccc
Q 000113 1872 HHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQ-----ASQYQQKYKTLEAMIREMQTNLSNTTAAAAPAQDKIEKSS 1946 (2159)
Q Consensus 1872 ~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaq-----a~~y~~k~k~lEaM~~~~k~~~~~~~~~~~~~~~k~EK~s 1946 (2159)
.+.|..|..+-.+-...+..++..++++--+-+.. -..|..-|..+...++.++..... ..
T Consensus 403 ~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~------------- 468 (569)
T PRK04778 403 SEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KP------------- 468 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CC-------------
Confidence 66666666666666666777777777666544444 346777777777777766655322 22
Q ss_pred cccCCCCCCcchhhHHHHHhhhhhhh-hhhHHhHhHHHHHHH
Q 000113 1947 TRLRGSSSPFRCIASVVQQMNSEKDQ-ELSAATLRIQKLEAL 1987 (2159)
Q Consensus 1947 ~rtRGS~SPFrCI~glvQQmn~EKDq-Els~ArlRIeELE~l 1987 (2159)
+|..--+ ++..|.-|+..|+.-
T Consensus 469 -------------------VNm~ai~~e~~e~~~~~~~L~~q 491 (569)
T PRK04778 469 -------------------INMEAVNRLLEEATEDVETLEEE 491 (569)
T ss_pred -------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666 777777777766654
No 57
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.18 Score=68.44 Aligned_cols=267 Identities=21% Similarity=0.291 Sum_probs=152.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHH---HHHHhhH
Q 000113 1592 KDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDL---YLKKSEA 1668 (2159)
Q Consensus 1592 kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~---~~~k~~~ 1668 (2159)
++.++++-.+++.....+.....++..+=-+...|.....+.++-+.....+.+.+..+=+.|...|..+ +.++.-.
T Consensus 777 ~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d 856 (1293)
T KOG0996|consen 777 KESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVD 856 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 3445555566666666666666555444445555555555555555553333344444444444444433 4456666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhH-HHHHhhHH
Q 000113 1669 EEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLW-VEICSLND 1747 (2159)
Q Consensus 1669 e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~-~e~~~l~~ 1747 (2159)
.+.|.++++.|+.|++|+=.+... -.+ -..|+.|++.+..+.+++=+.+ ++|-++++
T Consensus 857 ~~~l~~~~~~ie~l~kE~e~~qe~---------------------~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~ 914 (1293)
T KOG0996|consen 857 KKRLKELEEQIEELKKEVEELQEK---------------------AAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINE 914 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---------------------hhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHH
Confidence 788999999999999999887533 122 4668999999999999988876 56888888
Q ss_pred HHHHH-HHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHH
Q 000113 1748 KLAMA-YALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEI 1826 (2159)
Q Consensus 1748 kle~a-~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~ 1826 (2159)
++++- ..+|..+=+|..--|-++-+-|-- .+-+.+++-+|..++.|.-+..-++.++.++..+..--.=-+.++..++
T Consensus 915 ~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l-~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~ 993 (1293)
T KOG0996|consen 915 QLDKLEADIAKLTVAIKTSDRNIAKAQKKL-SELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKEL 993 (1293)
T ss_pred HHHHHHHHHHHhHHHHhcCcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88874 456666666665544444433321 1234455555555555555555555555555444433333333333444
Q ss_pred HHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhh
Q 000113 1827 QALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLH 1902 (2159)
Q Consensus 1827 ~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh 1902 (2159)
+.++..+-.+. ....+--..--++.++|+....+..+-...|.++.++++.|-+|
T Consensus 994 ~~~k~~~e~i~---------------------k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~ 1048 (1293)
T KOG0996|consen 994 RDLKSELENIK---------------------KSENELKAERIDIENKLEAINGELNEIESKIKQPEKELKKLSLC 1048 (1293)
T ss_pred HHHHHHHHHHH---------------------HHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHhhCccccc
Confidence 44444333222 11111111112255566666666666666667766666665555
No 58
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.03 E-value=0.72 Score=55.40 Aligned_cols=93 Identities=25% Similarity=0.362 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhH
Q 000113 1718 CEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHT 1797 (2159)
Q Consensus 1718 ~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~t 1797 (2159)
...|..+..+-..+..++|+++.++-.++.|++... .+++.+ +.++.-|-..+++.-..
T Consensus 60 r~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~-----------~~~~~l----------e~el~~lrk~ld~~~~~ 118 (312)
T PF00038_consen 60 RRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL-----------AERKDL----------EEELESLRKDLDEETLA 118 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH-----------HHHHHH----------HHHHhhhhhhhhhhhhh
Confidence 333555555556666666666666666666666651 111111 23455555777777777
Q ss_pred HHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhh
Q 000113 1798 VNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLS 1834 (2159)
Q Consensus 1798 in~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~ 1834 (2159)
...||+++..+++|....+ ..-+.|+..|+.++.
T Consensus 119 r~~le~~i~~L~eEl~fl~---~~heeEi~~L~~~~~ 152 (312)
T PF00038_consen 119 RVDLENQIQSLKEELEFLK---QNHEEEIEELREQIQ 152 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHTTSTT--
T ss_pred HhHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhccc
Confidence 7788888888888887643 333456666776665
No 59
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.95 E-value=0.39 Score=57.63 Aligned_cols=163 Identities=25% Similarity=0.325 Sum_probs=107.1
Q ss_pred hhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHH
Q 000113 1640 AKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCE 1719 (2159)
Q Consensus 1640 ~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1719 (2159)
++..++.++.+|+.|-..+..+......+...+++.......||.+|-.|... + --.+.-.-.+..
T Consensus 59 lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~-------l-------d~~~~~r~~le~ 124 (312)
T PF00038_consen 59 LRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKD-------L-------DEETLARVDLEN 124 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHH
T ss_pred hHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------h-------hhhhhhHhHHHH
Confidence 77888888888888888888888888888888888888888888888877644 1 111111334455
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHhhHHHHH--------------HHHHhhh---hhHHHHHHHHHHHHhhhhhhhhhhH
Q 000113 1720 EVESVEEELRKVSKERDKLWVEICSLNDKLA--------------MAYALAD---ENEAIAVEARQELEASKLYAEQKEE 1782 (2159)
Q Consensus 1720 ~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle--------------~a~a~a~---e~eaia~ea~q~ae~~k~yae~kee 1782 (2159)
.|+.++++|.-+. .....||..|..++. ++.++.+ +-|+++-..++.++
T Consensus 125 ~i~~L~eEl~fl~---~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e----------- 190 (312)
T PF00038_consen 125 QIQSLKEELEFLK---QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELE----------- 190 (312)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHH---hhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhh-----------
Confidence 5666666665433 233345666655552 2223322 22333333332222
Q ss_pred HHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHh
Q 000113 1783 EVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRR 1832 (2159)
Q Consensus 1783 evk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~ 1832 (2159)
......++++...+..-...+.-.++|+.+.|..-.+|..++..++.+
T Consensus 191 --~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~ 238 (312)
T PF00038_consen 191 --EWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAK 238 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccc
Confidence 345566777777777777788888999999999989999998888854
No 60
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.87 E-value=0.12 Score=60.35 Aligned_cols=225 Identities=25% Similarity=0.312 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHh
Q 000113 1653 DLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVS 1732 (2159)
Q Consensus 1653 eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~ 1732 (2159)
.|+..|.++-.....++..|.+..+..+..|.++..|+.- ++.+-.++++....+......|..+.
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rr--------------i~~lE~~le~~eerL~~~~~kL~~~e 70 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRR--------------IQLLEEELERAEERLEEATEKLEEAE 70 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4666777777777888888888888888888888766665 33344445555555555566666666
Q ss_pred hhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhH
Q 000113 1733 KERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEV 1812 (2159)
Q Consensus 1733 ~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~ 1812 (2159)
..-|....-.-.|..+....--=.+.-|.-.-+|+..++..-.=.++-.--+.++|.-++..|.-+..+|.++..|..++
T Consensus 71 ~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 71 KRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 66665555555555555555555555566666666655554333333344457788888888888888888777776666
Q ss_pred HhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 000113 1813 ERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRC 1892 (2159)
Q Consensus 1813 ~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~ 1892 (2159)
....=.-.+||.-....-++ .+....++..-...|.+|-.+....++.+.....+|..+
T Consensus 151 ~~~~~~lk~lE~~~~~~~~r---------------------e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~l 209 (237)
T PF00261_consen 151 KSVGNNLKSLEASEEKASER---------------------EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRL 209 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433333333322222222 222333333334455666677777777777777777766
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000113 1893 KDYLSEVVLHSEAQASQYQQKYKTLEAMIRE 1923 (2159)
Q Consensus 1893 k~~isel~lh~eaqa~~y~~k~k~lEaM~~~ 1923 (2159)
.+.| ..|+.||+.+.....+
T Consensus 210 e~eL-----------~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 210 EDEL-----------EKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHH-----------HHHHHHHHHHHHHHHH
Confidence 5554 3466777776666543
No 61
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.82 E-value=3.4 Score=54.86 Aligned_cols=201 Identities=18% Similarity=0.192 Sum_probs=101.0
Q ss_pred HHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhh----hHHhhhhHHHHHHHHHHHHHHhhH---HHHHHHHH
Q 000113 1604 QVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTI----DTLSDQNADLRVLLKDLYLKKSEA---EEHLEEQK 1676 (2159)
Q Consensus 1604 ~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~----~~ls~eN~eLr~~l~~~~~~k~~~---e~~L~e~~ 1676 (2159)
-++..|--+-+|+-.+--.|+-||-+++..-+++..+++-+ -.+-.-|.+|-.++.++-++..+. =+.|-++-
T Consensus 96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~ 175 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKN 175 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 34455555556666666666666666655555555432222 223333344444444443333322 23344444
Q ss_pred HHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhh
Q 000113 1677 EVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALA 1756 (2159)
Q Consensus 1677 ~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a 1756 (2159)
.++..+++++- +.+.|-...+-..+.+-..|+.-+.++|+..-|++.-.. ..+-+-
T Consensus 176 ~~lt~~~~q~~---------------------tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~---~tq~vl 231 (1265)
T KOG0976|consen 176 EELNEFNMEFQ---------------------TKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQE---NTQKVL 231 (1265)
T ss_pred hHHhHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH---HHHHHH
Confidence 44445544443 333346666777777777777777777777666554321 111111
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhH----HhhhhhHhhHHHHHHHH
Q 000113 1757 DENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEV----ERHHLIRDSLELEIQAL 1829 (2159)
Q Consensus 1757 ~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~----~r~r~~r~~le~e~~~~ 1829 (2159)
+|- ---.--.|.-++-|.-+--=+|-|--|+-|-.+||-+.+-|+-+-..+-.|. ++-+...+.|+.+-|..
T Consensus 232 ~ev-~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~ 307 (1265)
T KOG0976|consen 232 KEV-MQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTR 307 (1265)
T ss_pred HHH-HHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 110 0000111233444444444566777777777788877777776655555554 34444444444444433
No 62
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.56 E-value=7.6 Score=55.42 Aligned_cols=114 Identities=19% Similarity=0.314 Sum_probs=63.9
Q ss_pred hhhcccccccchhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHH
Q 000113 2015 DLLGVKLDMTNYAN---LIDQEHVQKLVVAAQQQTQELLAKEQIILNLRKRIEDLIEEHESCTSILKQREADILAAQINV 2091 (2159)
Q Consensus 2015 dLLGVKldmTnyA~---liD~~q~~kl~e~a~~~~~e~~~ke~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~ 2091 (2159)
.|.||+||..+-.. .-|.+++..=++.+..+...-.++ ...+.+++...-...+.+-.++...++.+-.++-.+
T Consensus 582 slyGl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~---~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1201)
T PF12128_consen 582 SLYGLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEER---QEELEKQLKQINKKIEELKREITQAEQELKQAEQDL 658 (1201)
T ss_pred ccceeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 78999998765432 124444444333444444333332 223344444444444455566666666666666666
Q ss_pred HHHHHH-HHHHHHhhhhhhcchhhhhhHhhhhHHHHHHHhc
Q 000113 2092 EQLRER-DQLLSAQNDMLKMDKTNLLKRISELDDMVKMLIG 2131 (2159)
Q Consensus 2092 eqL~qr-dqlL~aqnemLk~e~~n~~~ki~eLd~~vk~L~g 2131 (2159)
++|+.. +++-..-++.++..+....+.+..++..++.+-.
T Consensus 659 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 699 (1201)
T PF12128_consen 659 QRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQ 699 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666643 3333444556666667777777777777776654
No 63
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.56 E-value=8.4 Score=55.91 Aligned_cols=59 Identities=31% Similarity=0.387 Sum_probs=41.4
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHHH---------------HHHHHHhhhhhhcchhhhhhHhhhhHHHHHHHhcc
Q 000113 2073 CTSILKQREADILAAQINVEQLRER---------------DQLLSAQNDMLKMDKTNLLKRISELDDMVKMLIGT 2132 (2159)
Q Consensus 2073 ~~~ei~~k~ad~~aaqi~~eqL~qr---------------dqlL~aqnemLk~e~~n~~~ki~eLd~~vk~L~g~ 2132 (2159)
-|.++..+-..-.+||-++++|++- .|+|. +---+-.++++++.++.-|++.++.|+.-
T Consensus 594 ~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~-~~~~~~~~~~~~~~~~~~L~~~i~~l~~~ 667 (1486)
T PRK04863 594 RIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLE-RERELTVERDELAARKQALDEEIERLSQP 667 (1486)
T ss_pred HHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3555666666677888888888641 12222 22236678899999999999999999873
No 64
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.50 E-value=6.4 Score=53.88 Aligned_cols=67 Identities=22% Similarity=0.243 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhh
Q 000113 2056 ILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISEL 2122 (2159)
Q Consensus 2056 ~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eL 2122 (2159)
+.+|++-|++-+.|=.+|...++.-+.++..-+|..+.+-++=++|++.-.-|+-||.-|.++|.-|
T Consensus 490 iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 490 IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4455555555555555666666666666666666666666666666655555555555555555444
No 65
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.40 E-value=10 Score=55.13 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhh
Q 000113 2054 QIILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNL 2115 (2159)
Q Consensus 2054 ~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~ 2115 (2159)
..+..|+.|.++..+-+++|..-|-+--.....+.....++..|-+.|..|.+-|-.-..+-
T Consensus 610 ~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g~ 671 (1486)
T PRK04863 610 DALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSE 671 (1486)
T ss_pred HHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence 45677999999999999999999998888888999999999999999998888765543333
No 66
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.37 E-value=9.5 Score=54.48 Aligned_cols=102 Identities=23% Similarity=0.360 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHh
Q 000113 1724 VEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEK 1803 (2159)
Q Consensus 1724 l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~ 1803 (2159)
.+..+..+..++.++..++-.++-++..+..-.+|.+.++.--.- -+...+++.....-+..++...+.+..
T Consensus 433 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~~ 504 (1201)
T PF12128_consen 433 SQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKR--------LEQAQEQQNQAQQAVEELQAEEQELRK 504 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666777777777766666666666666655441111 122344555555556666666666666
Q ss_pred HhhhhhhhHHhhhhhHhhHHHHHHHHHHhh
Q 000113 1804 KVYEMNGEVERHHLIRDSLELEIQALRRRL 1833 (2159)
Q Consensus 1804 kV~~~k~e~~r~r~~r~~le~e~~~~~~~~ 1833 (2159)
+-+....+....+-....++..+..|..++
T Consensus 505 ~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 505 ERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 655555566555555556666666655554
No 67
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.33 E-value=9.8 Score=54.16 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=54.4
Q ss_pred hhhhhhhccCCCCchhhhHHHHHHHHHhhhhHHH---HHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhcccch
Q 000113 1030 GQIESIVCLFPQFNVEVTENVGRAAKVCIEKDET---ILLLQKSLEEAQKMVVEMKEKCISLKGATIALNEIQHLGNEEC 1106 (2159)
Q Consensus 1030 ~qi~~I~~SFP~~~~wIsEhV~~a~r~~iEKE~~---I~~Lq~~LEdA~~m~~dme~kL~SLrgAtlainE~~q~~~~e~ 1106 (2159)
|.|..|+++=|.-+=-|=|.+-...+..-.|++. +...+..|+.-.....+++..|..|+.-.-...+++.+..+-.
T Consensus 144 G~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~ 223 (1163)
T COG1196 144 GKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELR 223 (1163)
T ss_pred ccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777766765555555555555555555544 4555677888888899999999999888777777777766544
Q ss_pred hhhH
Q 000113 1107 TDEA 1110 (2159)
Q Consensus 1107 ~~e~ 1110 (2159)
.-+.
T Consensus 224 ~~~~ 227 (1163)
T COG1196 224 ELEL 227 (1163)
T ss_pred HHHH
Confidence 3333
No 68
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.14 E-value=7.8 Score=51.21 Aligned_cols=427 Identities=24% Similarity=0.283 Sum_probs=224.3
Q ss_pred HHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhh
Q 000113 1625 KLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIA 1704 (2159)
Q Consensus 1625 ~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~ 1704 (2159)
.+--.|+++...+......=++||++-..=-+.|+.+-++..+++..++-+-+.|.-|+.|.-+|-++
T Consensus 443 l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~i------------ 510 (961)
T KOG4673|consen 443 LLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSI------------ 510 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH------------
Confidence 34467888888888866666777777777777888888999999988888888999999999988877
Q ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHH-------HHHHH-hhhhhHHHHHHHHH--------
Q 000113 1705 EDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKL-------AMAYA-LADENEAIAVEARQ-------- 1768 (2159)
Q Consensus 1705 ~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kl-------e~a~a-~a~e~eaia~ea~q-------- 1768 (2159)
||--..-+.++..+|+.++.++...-++-.+++.-+--|..++ .-|+. |-.+|-+---|||+
T Consensus 511 --l~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqq 588 (961)
T KOG4673|consen 511 --LRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQ 588 (961)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHH
Confidence 2222223666777777777777776666666555555554443 33443 22222221113332
Q ss_pred ---------HHHhhhhhhhhh-hHHHHHHHHhHHHHHhH-----------HHHHHhHhhhhhhhH----------Hh---
Q 000113 1769 ---------ELEASKLYAEQK-EEEVKILEHSIEELEHT-----------VNALEKKVYEMNGEV----------ER--- 1814 (2159)
Q Consensus 1769 ---------~ae~~k~yae~k-eeevk~le~sveele~t-----------in~LE~kV~~~k~e~----------~r--- 1814 (2159)
-+|-.-+|.|+- .+|+.-|-|-.++-|.. ..-|=.++..|.+=. ||
T Consensus 589 v~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~ 668 (961)
T KOG4673|consen 589 VEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLN 668 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 223333343331 23444343333322211 111111222221110 11
Q ss_pred ------hhhhHhhHHHHHHHHHHhhhhccccc--------cccccccccCCCchhhhhhhHHHHH-------HHHHHHHH
Q 000113 1815 ------HHLIRDSLELEIQALRRRLSTVQNFS--------DIVDSENINAGHTEDQMSRKLQDRL-------LQLQEAHH 1873 (2159)
Q Consensus 1815 ------~r~~r~~le~e~~~~~~~~~~v~n~~--------~~~~~~~~~~~~~~~~~~r~~~~~~-------~~l~~a~~ 1873 (2159)
|-+.|--.+.| |+-+|.++.. ||+ .+.-.++ .+++.+|...- .++..|+.
T Consensus 669 ~rL~dSQtllr~~v~~e-qgekqElL~~-~~~l~s~~~q~sllraE~-------~~l~~~le~e~nr~~~~~~e~~~~qe 739 (961)
T KOG4673|consen 669 ERLSDSQTLLRINVLEE-QGEKQELLSL-NFSLPSSPIQLSLLRAEQ-------GQLSKSLEKERNRAAENRQEYLAAQE 739 (961)
T ss_pred HhhhhHHHHHHHHHHHH-hhhHHHHHHH-hcCCCcchhHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 22222222222 3333322221 121 1111121 14455554332 34556677
Q ss_pred HHHHHHHHhhhhHHHHHHHHh-h---hhhhhhhhHH-HH-HHHHHH-HHHHHHHHHHhhcCCCCcccccccccccc----
Q 000113 1874 RIQLLEREKEEQNEEIKRCKD-Y---LSEVVLHSEA-QA-SQYQQK-YKTLEAMIREMQTNLSNTTAAAAPAQDKI---- 1942 (2159)
Q Consensus 1874 ~i~~l~~~~~~k~~ei~q~k~-~---isel~lh~ea-qa-~~y~~k-~k~lEaM~~~~k~~~~~~~~~~~~~~~k~---- 1942 (2159)
.|+-|+..+.....||+..|. | .-+..||-|+ |+ +++++- -+.||. +|-..+||. +.+--+
T Consensus 740 E~~~l~~r~~~le~e~r~~k~~~~q~lq~~ll~ve~~~k~~e~~~~~~~~ler-----s~a~i~Ssp---~~s~~~SgSn 811 (961)
T KOG4673|consen 740 EADTLEGRANQLEVEIRELKRKHKQELQEVLLHVELIQKDLEREKASRLDLER-----STARINSSP---VSSQLPSGSN 811 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhCHHHHhhccc-----ccCccCCCC---chhhCCCCch
Confidence 777777777777777766653 2 3344566664 22 222111 111110 111122221 111000
Q ss_pred cccc-cccCCCCCCcchhhHHHHHhhhhhhhhhhHHh---HhHHHHHHHHhhhcchhhhhhhhhhhhhcchhHHHHhhhc
Q 000113 1943 EKSS-TRLRGSSSPFRCIASVVQQMNSEKDQELSAAT---LRIQKLEALAASRQKEVCMLNTRLAAAESMTHDVIRDLLG 2018 (2159)
Q Consensus 1943 EK~s-~rtRGS~SPFrCI~glvQQmn~EKDqEls~Ar---lRIeELE~laa~rQkEi~~LnarLAa~eSMTHDVIRdLLG 2018 (2159)
|-.+ .-+-.=+--|-|-.++-||=-.=+---|+++- -||+-+|+|..-|.-||--|..+||..+| ||+.|.
T Consensus 812 ee~ag~~~~f~~dd~s~~~s~gqq~~~~~~~hl~~~~~nttt~eh~eall~QreGElthlq~e~~~le~-----~Rs~la 886 (961)
T KOG4673|consen 812 EEIAGQNSAFENDDFSEKRSMGQQEATMSPYHLKSITPNTTTSEHYEALLRQREGELTHLQTELASLES-----IRSSLA 886 (961)
T ss_pred HhHhcccchhhccchhhhhcCCCCCcccchhHHhhhcCCCchHHHHHHHHHhhcchHHHHHHHHHHHHH-----HHHHHH
Confidence 0000 00000112356666444554444444455544 48999999999999999999999999887 666552
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHH
Q 000113 2019 VKLDMTNYANLIDQEHVQKLVVAAQQQTQELLAKEQIILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERD 2098 (2159)
Q Consensus 2019 VKldmTnyA~liD~~q~~kl~e~a~~~~~e~~~ke~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrd 2098 (2159)
+.+.||+- +-++...|-++|-.+|.++.+|=....-.|.=+-.|.-++-.-+.-++.|..
T Consensus 887 --------------eElvklT~----e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~-- 946 (961)
T KOG4673|consen 887 --------------EELVKLTA----ECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKE-- 946 (961)
T ss_pred --------------HHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHH--
Confidence 23344332 2344455557888999999988777777776666666666665665555542
Q ss_pred HHHHHhhhhh
Q 000113 2099 QLLSAQNDML 2108 (2159)
Q Consensus 2099 qlL~aqnemL 2108 (2159)
|.+.|..||
T Consensus 947 -mYk~QIdeL 955 (961)
T KOG4673|consen 947 -MYKEQIDEL 955 (961)
T ss_pred -HHHHHHHHH
Confidence 344444443
No 69
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=14 Score=51.75 Aligned_cols=302 Identities=17% Similarity=0.219 Sum_probs=163.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHH
Q 000113 1591 IKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEE 1670 (2159)
Q Consensus 1591 ~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~ 1670 (2159)
-+.-+++++--++.|.+...-|.+-+.=+......||+.- ...++-|-.||.-++.+=...=...+....
T Consensus 265 y~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k----------~~al~fL~kenel~~~~~~~~q~~~~~~~~ 334 (1293)
T KOG0996|consen 265 YKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPK----------NEALEFLKKENELFRKKNKLCQYILYESRA 334 (1293)
T ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888777766666666666532 134555666666665555554455555555
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhh---hhhccchhhHHHH-HHHHHHHHHHHHhhhhhhhHHHHHhhH
Q 000113 1671 HLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAED---LRIVTSDRDKLCE-EVESVEEELRKVSKERDKLWVEICSLN 1746 (2159)
Q Consensus 1671 ~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~v~~l~~~l~~~~~Erd~l~~e~~~l~ 1746 (2159)
.+++..+-..+++.++...+-- .-+--.+..+- .+--+-+..+..+ .+.+++.++.++-.+.-..++.+-.++
T Consensus 335 ki~~~~~~~~~~~e~lk~~~ek---~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~ 411 (1293)
T KOG0996|consen 335 KIAEMQEELEKIEEGLKDENEK---FDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT 411 (1293)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554432211 00000011111 1111222333333 445555555555555555555566666
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHH
Q 000113 1747 DKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEI 1826 (2159)
Q Consensus 1747 ~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~ 1826 (2159)
.|+..+.+--++..-=--|++.+-|-.-+--++=..|+.-|+..-+-++.+ |+..-..++.+.+-.+=-.+.++.+|
T Consensus 412 ~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~---l~e~~~~l~~~t~~~~~e~~~~ekel 488 (1293)
T KOG0996|consen 412 SKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERE---LDEILDSLKQETEGIREEIEKLEKEL 488 (1293)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 665555554444333333334444444344444455555555544444433 33444555566555555555566665
Q ss_pred HHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHH
Q 000113 1827 QALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQ 1906 (2159)
Q Consensus 1827 ~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaq 1906 (2159)
--+--++..+++=-+..-| .-+.+......-...+.+++..+........++..+|...|+-|.-+..
T Consensus 489 ~~~~~~~n~~~~e~~vaes-------el~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~----- 556 (1293)
T KOG0996|consen 489 MPLLKQVNEARSELDVAES-------ELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ----- 556 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----
Confidence 5444444444422221111 2345555556667777888888888888888888888888887765542
Q ss_pred HHHHHHHHHHHHHHHH
Q 000113 1907 ASQYQQKYKTLEAMIR 1922 (2159)
Q Consensus 1907 a~~y~~k~k~lEaM~~ 1922 (2159)
+..++-|.|+.|..
T Consensus 557 --e~~~~~k~l~~~~~ 570 (1293)
T KOG0996|consen 557 --ELKEKEKELPKLRK 570 (1293)
T ss_pred --HHHHHHHhHHHHHH
Confidence 45566666666654
No 70
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.84 E-value=0.0039 Score=82.64 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhhhhhcchhhhhhHhhhhHHHHHHH--hcccc
Q 000113 2094 LRERDQLLSAQNDMLKMDKTNLLKRISELDDMVKML--IGTQS 2134 (2159)
Q Consensus 2094 L~qrdqlL~aqnemLk~e~~n~~~ki~eLd~~vk~L--~g~qn 2134 (2159)
+.++-.-|..+|+.|..|++.|.+++..|+..|.++ .|..+
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~ 543 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFN 543 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--B
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 334444488899999999999999999999999884 45443
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.83 E-value=1.6 Score=56.29 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=14.9
Q ss_pred hcchhhhhhhhh-hhhhcchhHHHHhhhc
Q 000113 1991 RQKEVCMLNTRL-AAAESMTHDVIRDLLG 2018 (2159)
Q Consensus 1991 rQkEi~~LnarL-Aa~eSMTHDVIRdLLG 2018 (2159)
..-.|++|--=. ++.|.-+.+.+.++|-
T Consensus 495 ~~~~~lilDEp~~~~ld~~~~~~~~~~l~ 523 (562)
T PHA02562 495 VDTNLLILDEVFDGALDAEGTKALLSILD 523 (562)
T ss_pred CCcCeEEEecccCcccchhHHHHHHHHHH
Confidence 455666666544 4455555554444443
No 72
>PRK11637 AmiB activator; Provisional
Probab=95.81 E-value=5.2 Score=50.74 Aligned_cols=86 Identities=17% Similarity=0.258 Sum_probs=46.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHH
Q 000113 1646 TLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVE 1725 (2159)
Q Consensus 1646 ~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 1725 (2159)
.+...+.+++..|+.+-..+...+.++.+..+-+..++.+|-.+... ...+...+..++
T Consensus 37 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~q---------------------i~~~~~~i~~~~ 95 (428)
T PRK11637 37 AFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEA---------------------ISQASRKLRETQ 95 (428)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Confidence 33444556666666666666666666666666666666666555444 334444444444
Q ss_pred HHHHHHhhhhhhhHHHHHhhHHHHHHH
Q 000113 1726 EELRKVSKERDKLWVEICSLNDKLAMA 1752 (2159)
Q Consensus 1726 ~~l~~~~~Erd~l~~e~~~l~~kle~a 1752 (2159)
.+|+.+..+-+.++.+|..++++++-.
T Consensus 96 ~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 96 NTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444454544444444433
No 73
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.80 E-value=0.011 Score=78.65 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=29.8
Q ss_pred CCCCCCcchhh--HHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhcchhHHHHhhhccccccc
Q 000113 1950 RGSSSPFRCIA--SVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAESMTHDVIRDLLGVKLDMT 2024 (2159)
Q Consensus 1950 RGS~SPFrCI~--glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eSMTHDVIRdLLGVKldmT 2024 (2159)
+|.+.|+.++. ++... ..|+...+.-|+.+| .-..|=||||. ++ =+=-.+||-.|||.|+||+
T Consensus 587 ~~~~~~~~~~p~~~~~~~-----~~e~~~l~~~~~~~e-kr~~RLkevf~--~k----s~eFr~av~~llGyki~~~ 651 (722)
T PF05557_consen 587 EGNSQPVDAVPTSSLESQ-----EKEIAELKAELASAE-KRNQRLKEVFK--AK----SQEFREAVYSLLGYKIDFM 651 (722)
T ss_dssp TTT---------------------HHHHHHHHHHHHHH-HHHHHHHHHHH--HH----HHHHHHHHHHHHSEEEEEE
T ss_pred cCCCCCcccccchhhhhh-----HHHHHHHHHHHHHHH-HHHHHHHHHHH--HH----HHHHHHHHHHHhcceeeec
Confidence 46677777764 33322 113444455555554 23456677772 22 1224699999999999986
No 74
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.63 E-value=17 Score=51.07 Aligned_cols=142 Identities=25% Similarity=0.326 Sum_probs=69.4
Q ss_pred hhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHH
Q 000113 1640 AKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCE 1719 (2159)
Q Consensus 1640 ~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1719 (2159)
.+..+..|+.+|.+++..++++-.....+-+.++.--..-..||...+ |+++-++|.+++.-
T Consensus 506 ~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~------------------d~~~e~~~~~kl~~ 567 (1317)
T KOG0612|consen 506 EEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAEL------------------DMRAESEDAGKLRK 567 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh------------------hhhhhHHHHhhHhh
Confidence 556666677777777777776644444444444433333344444444 44444555666654
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHH----hhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHH
Q 000113 1720 EVESVEEELRKVSKERDKLWVEICSLNDKLAMAYA----LADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELE 1795 (2159)
Q Consensus 1720 ~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a----~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele 1795 (2159)
..++....+..+.. +...+.+++.+.+- +-+|+. .-+..+|..+----+--|+++-|+..+..|+
T Consensus 568 ~~~e~~~~iq~~~e-------~~~~~~d~l~~le~~k~~ls~~~~----~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~ 636 (1317)
T KOG0612|consen 568 HSKELSKQIQQELE-------ENRDLEDKLSLLEESKSKLSKENK----KLRSELEKERRQRTEISEIIAELKEEISSLE 636 (1317)
T ss_pred hhhhhhHHHHHHhh-------ccccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44444333332222 23333334333321 122221 1122222222111223467778888899999
Q ss_pred hHHHHHHhHhhhhhh
Q 000113 1796 HTVNALEKKVYEMNG 1810 (2159)
Q Consensus 1796 ~tin~LE~kV~~~k~ 1810 (2159)
+|+..+....-.+++
T Consensus 637 ~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 637 ETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHhhhhHHHHHHH
Confidence 998887654444433
No 75
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.62 E-value=1.1 Score=59.01 Aligned_cols=201 Identities=23% Similarity=0.299 Sum_probs=129.9
Q ss_pred hhHHHHhhHHHHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhh---HHHHHHhHHHHhhhhchhh
Q 000113 1559 SLKKELQRKEVLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQL---DNLLLQHEKLEASLTDTEN 1635 (2159)
Q Consensus 1559 ~l~~El~RK~~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l---~d~~~~~~~LE~~L~d~~~ 1635 (2159)
.|+.+|..=..-+.++.=++.-|+-+ -+.+..++++.-.....++.++..|.--+ .|.=.+-.+|++-+..+.+
T Consensus 332 ~l~~~l~~l~~~i~~~~~~~~~l~~~---~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~ 408 (594)
T PF05667_consen 332 ELQEQLDELESQIEELEAEIKMLKSS---LKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQ 408 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555433 23566777777777777777777664332 2222333555555555555
Q ss_pred HHHH------------------hhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhh
Q 000113 1636 ALVI------------------AKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLL 1697 (2159)
Q Consensus 1636 al~~------------------~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~ 1697 (2159)
.+.. .+........+-......|+.+-....++.+++..+.+.+.-|..++-.|+-.
T Consensus 409 rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~----- 483 (594)
T PF05667_consen 409 RLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD----- 483 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----
Confidence 4444 22222222233334456677777777888888888999999999988888765
Q ss_pred hhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 000113 1698 TSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLY 1776 (2159)
Q Consensus 1698 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~y 1776 (2159)
+ .=-..|.-.-.+-..|..-+.++.+|..+=..||.||-++.+||+..++.+|| -|..+|++---++|+|
T Consensus 484 --~-----~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE--lifrdAKkDe~~rkaY 553 (594)
T PF05667_consen 484 --V-----NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDE--LIFRDAKKDEAARKAY 553 (594)
T ss_pred --C-----CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHhhcCHHHHHHH
Confidence 1 00112222334455556667999999999999999999999999999999997 5888888877788887
No 76
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=95.61 E-value=1.2 Score=58.97 Aligned_cols=223 Identities=20% Similarity=0.261 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhHHHHHHHHhhhhHHHHHHH
Q 000113 677 TRFALENIRLLEQLQLFQSFYEQGEREKLLAELAELRDQLLDIVEGKERFSSRHENQENDTTTELENCRNMNSKLMREVE 756 (2159)
Q Consensus 677 ~~~~~En~~L~eel~~~~~f~~~gere~l~~ei~~Lr~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~l~r~~~ 756 (2159)
..+..-.+=|..||+.|-.+-+-.|-..|+.||...=..|-.+--.- .-+.++.-. +..-|.+|+-|.|.+.
T Consensus 333 a~KVrt~KYLLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~t-----niq~EIALA---~QplrsENaqLrRrLr 404 (861)
T PF15254_consen 333 AEKVRTLKYLLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGST-----NIQVEIALA---MQPLRSENAQLRRRLR 404 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhccc-----cchhhhHhh---hhhhhhhhHHHHHHHH
Confidence 34555566688888888888888899999999988777654332111 112233333 5666899999999999
Q ss_pred HHHHHhhhccccCCccccccCCcchhhhhhhcccchhhhhhccCCCCCCCCCCCcccccccccccccCCcchhhhhhhHH
Q 000113 757 ELRTELRNCGQATSSSAADSFSKDSVEFRRADKFSLVETISMKTDSGDEQTPYNLTDDQNMRNDQILHPSDTEKQLTDAK 836 (2159)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~l~~a~ 836 (2159)
-|-..|.+...+.-...+..+. -++++||- |+. --..+|+|..
T Consensus 405 ilnqqlreqe~~~k~~~~~~~n--------~El~sLqS----------------lN~-------------~Lq~ql~es~ 447 (861)
T PF15254_consen 405 ILNQQLREQEKAEKTSGSQDCN--------LELFSLQS----------------LNM-------------SLQNQLQESL 447 (861)
T ss_pred HHHHHHHHHHhhcccCCCcccc--------hhhHHHHH----------------HHH-------------HHHHHHHHHH
Confidence 9999998643321111111111 34555552 000 1234555555
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhHHHHHhcccccccccccCCCCccccccchhhhhhhccccccCCCCCCchhHHHHH
Q 000113 837 MLIEALEREQVHQNRELHLMQEQNQRYMEVLSHRDYAEGHSLGKSGSYCLESNNFEKQKKGMIKESSKGIDGTSLQAKLD 916 (2159)
Q Consensus 837 ~~~ealesqqi~~i~e~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~lq~kl~ 916 (2159)
--.|.|-+-+--+++.|+..++.|.+|..++..+|
T Consensus 448 k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd--------------------------------------------- 482 (861)
T PF15254_consen 448 KSQELLQSKNEELLKVIENQKEENKRLRKMFQEKD--------------------------------------------- 482 (861)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 55666666666666666666666666654443322
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHhhhhhhhhhhhhhhhhhH
Q 000113 917 KLTEELETARVLNCQYQEDQASHLSCQHQVDLVREQVEMEATKTILQLQEEVA---SLQLELHENLCCMTEENTCLRNTI 993 (2159)
Q Consensus 917 rm~~~Le~a~~lN~~yq~d~a~q~~~~~e~d~v~~qvE~et~~~I~~lqeel~---~lq~e~~~~~~~~~~e~~~L~~~~ 993 (2159)
.+.-.-++|.+.||+++=+.+-+-|+ ++|..|...- +||+.|..+|
T Consensus 483 ---------------------------~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~se----kEN~iL~itl 531 (861)
T PF15254_consen 483 ---------------------------QELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASE----KENQILGITL 531 (861)
T ss_pred ---------------------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----hhhhHhhhHH
Confidence 12223345566677776666555444 4444444443 8999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 000113 994 AAKEEEIRSRCTEWEKATLELTNFLAD 1020 (2159)
Q Consensus 994 ~~ke~Ei~~l~~ewe~~t~el~~~L~d 1020 (2159)
.++|.||..|-+----+-.=++.+|.|
T Consensus 532 rQrDaEi~RL~eLtR~LQ~Sma~lL~d 558 (861)
T PF15254_consen 532 RQRDAEIERLRELTRTLQNSMAKLLSD 558 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999876555555555666654
No 77
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.41 E-value=2.2 Score=55.11 Aligned_cols=94 Identities=17% Similarity=0.339 Sum_probs=47.2
Q ss_pred hHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhh
Q 000113 1781 EEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRK 1860 (2159)
Q Consensus 1781 eeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~ 1860 (2159)
...+..|+..+.+|+..+..|+.+...+.+..++ ...+...+..+++.+.... ..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~----~~~~~~~i~el~~~i~~~~---------------------~~ 352 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE----FNEQSKKLLELKNKISTNK---------------------QS 352 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH---------------------HH
Confidence 4555666666666666666666555544444332 2233344444444433332 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhh
Q 000113 1861 LQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEV 1899 (2159)
Q Consensus 1861 ~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel 1899 (2159)
+.+........+..|.-|+....+.+.+++++.+.+-++
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 223334445555566666666665556666555554443
No 78
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.90 E-value=3.6 Score=48.51 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=26.2
Q ss_pred HHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHH
Q 000113 1784 VKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEI 1826 (2159)
Q Consensus 1784 vk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~ 1826 (2159)
+|-.|.-.+..|..|+.||..|+.+.+++...+-....+..+|
T Consensus 185 lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 185 LKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666655555
No 79
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.80 E-value=1.9 Score=57.85 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhh-h----HHHHH-----HHHHHHHHHHHHHHHhhcCCCCcccccccccc
Q 000113 1871 AHHRIQLLEREKEEQNEEIKRCKDYLSEVVLH-S----EAQAS-----QYQQKYKTLEAMIREMQTNLSNTTAAAAPAQD 1940 (2159)
Q Consensus 1871 a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh-~----eaqa~-----~y~~k~k~lEaM~~~~k~~~~~~~~~~~~~~~ 1940 (2159)
....|+.|++|+..|++++..++.++.+|--. - |++++ .-|.|-..||.=.
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL------------------- 610 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL------------------- 610 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh-------------------
Confidence 34778888888888888888888888555432 1 11111 1233333333211
Q ss_pred cccccccccCCCCCCcchhhHHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhh
Q 000113 1941 KIEKSSTRLRGSSSPFRCIASVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAA 2005 (2159)
Q Consensus 1941 k~EK~s~rtRGS~SPFrCI~glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~ 2005 (2159)
|+-|| |+.+==--|..||-.||.+++..-.|.+||--|.+|||-+
T Consensus 611 -----saEtr---------------iKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 611 -----SAETR---------------IKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred -----hHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334 3333334466789999999999999999999999999854
No 80
>PRK11637 AmiB activator; Provisional
Probab=94.72 E-value=8.6 Score=48.85 Aligned_cols=92 Identities=15% Similarity=0.264 Sum_probs=54.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhH
Q 000113 1589 KDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEA 1668 (2159)
Q Consensus 1589 kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~ 1668 (2159)
-+.+++++.+-..+.+++.++....+++.++...-..|+.+|......|...+..|+ .+...|..+-.....+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~-------~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLN-------QLNKQIDELNASIAKL 115 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 356777777777777777777776677766666666666666665555544444444 4444455555555556
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 000113 1669 EEHLEEQKEVITGLEKEIL 1687 (2159)
Q Consensus 1669 e~~L~e~~~vie~LE~eil 1687 (2159)
++.|+.+.+.+..+=..+-
T Consensus 116 q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 116 EQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666655555444433
No 81
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.67 E-value=0.0089 Score=80.72 Aligned_cols=212 Identities=20% Similarity=0.308 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcccccc-----ccccccccCCCchh
Q 000113 1781 EEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSD-----IVDSENINAGHTED 1855 (2159)
Q Consensus 1781 eeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~-----~~~~~~~~~~~~~~ 1855 (2159)
.+++.-+...+..||.+..-|...|..+.-++++++-....|+.--..+-..+.-...-.+ -+.+...+ .
T Consensus 334 ~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~-----r 408 (859)
T PF01576_consen 334 QEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREA-----R 408 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-----H
Confidence 3445555566666777777777777888888888877777666543333333322221111 00111111 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhh--hh--------hHHHHHHHHHHHHHHHHHHHHhh
Q 000113 1856 QMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVV--LH--------SEAQASQYQQKYKTLEAMIREMQ 1925 (2159)
Q Consensus 1856 ~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~--lh--------~eaqa~~y~~k~k~lEaM~~~~k 1925 (2159)
.++-.+..-..++.++..++..|+++......||..++..+++-. +| -|++..+.+.-+.++|+=++..-
T Consensus 409 ~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E 488 (859)
T PF01576_consen 409 ELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEE 488 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222344556667777888887777777777777666542 22 13333344444444443332100
Q ss_pred cCCCCcccccccccccccccccccCCCCCCcchhhHHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhh-
Q 000113 1926 TNLSNTTAAAAPAQDKIEKSSTRLRGSSSPFRCIASVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAA- 2004 (2159)
Q Consensus 1926 ~~~~~~~~~~~~~~~k~EK~s~rtRGS~SPFrCI~glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa- 2004 (2159)
+.+. |.- .=.|||+.+-+-+|+ -+=+|+|.+-.+-||.|=-|++.|-+
T Consensus 489 --------------------~~~l-------Rl~-~el~~~r~e~er~l~---eKeeE~E~~Rr~~qr~l~~le~~LE~E 537 (859)
T PF01576_consen 489 --------------------QKKL-------RLQ-VELQQLRQEIERELQ---EKEEEFEETRRNHQRQLESLEAELEEE 537 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------HHHH-------HHH-HHHHHHHHHHHHHHH---hhhhHHHHHHHhhHHHHHHHHhHHHHH
Confidence 0111 111 124788888887776 34578899999999999999998853
Q ss_pred ------hhcchhHHHHhh--hcccccccchhh
Q 000113 2005 ------AESMTHDVIRDL--LGVKLDMTNYAN 2028 (2159)
Q Consensus 2005 ------~eSMTHDVIRdL--LGVKldmTnyA~ 2028 (2159)
+--+-++.=.|+ |-+.||..|+++
T Consensus 538 ~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~ 569 (859)
T PF01576_consen 538 RKERAEALREKKKLESDLNELEIQLDHANRAN 569 (859)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 112222221111 578899999885
No 82
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.45 E-value=14 Score=45.36 Aligned_cols=194 Identities=22% Similarity=0.314 Sum_probs=124.5
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 000113 1706 DLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVK 1785 (2159)
Q Consensus 1706 ~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk 1785 (2159)
+++.+-+-.+.+|--|..+.+....+..+||.+-.+|-.|+++..-.-+-+.+ ...+++..-+-+.-|- ..--.++
T Consensus 35 ~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e---L~~~~~~l~e~~~~~~-~~~~~~~ 110 (294)
T COG1340 35 EASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE---LRKEYRELKEKRNEFN-LGGRSIK 110 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhh-ccCCCHH
Confidence 33444444999999999999999999999999999999999999888777776 6666666655554442 2233344
Q ss_pred HHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHh-hHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHH
Q 000113 1786 ILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRD-SLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDR 1864 (2159)
Q Consensus 1786 ~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~-~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~ 1864 (2159)
-|++-+++||...- -..+.=+.++..+++= .|+.+|+..+.++-.-.. ...+.-..++.
T Consensus 111 ~ler~i~~Le~~~~-----T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~---------------~~el~aei~~l 170 (294)
T COG1340 111 SLEREIERLEKKQQ-----TSVLTPEEERELVQKIKELRKELEDAKKALEENEK---------------LKELKAEIDEL 170 (294)
T ss_pred HHHHHHHHHHHHHH-----hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence 45555555544331 1233445566655553 366666665544332221 22344555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 000113 1865 LLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQTN 1927 (2159)
Q Consensus 1865 ~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~ 1927 (2159)
.....+-|++|+.|-.+..+.-.++..|..-+-|+. .-|-.|.++|-.+=.++.++.-+
T Consensus 171 k~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~R----keade~he~~ve~~~~~~e~~ee 229 (294)
T COG1340 171 KKKAREIHEKIQELANEAQEYHEEMIKLFEEADELR----KEADELHEEFVELSKKIDELHEE 229 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHH
Confidence 666677778888888887777777777777777765 23456666666666666655444
No 83
>PRK01156 chromosome segregation protein; Provisional
Probab=94.19 E-value=34 Score=47.35 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhh
Q 000113 1858 SRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEV 1899 (2159)
Q Consensus 1858 ~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel 1899 (2159)
...+......+....+.|..|+++....+.++..++..+..|
T Consensus 468 ~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l 509 (895)
T PRK01156 468 NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYL 509 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666666677777777766666666655555544
No 84
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.02 E-value=0.41 Score=63.03 Aligned_cols=51 Identities=27% Similarity=0.488 Sum_probs=34.6
Q ss_pred ceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 202 TRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 202 ~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
..|+||..+.... ...+|. .+..++...-.+||. ||=||.+|+||||-+.+
T Consensus 283 ~~~TFDnFvvG~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 4599997654443 444553 334455544456786 89999999999999865
No 85
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.72 E-value=0.018 Score=76.39 Aligned_cols=191 Identities=23% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHH
Q 000113 1646 TLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVE 1725 (2159)
Q Consensus 1646 ~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 1725 (2159)
.++.+..+||..++.+=-+....++.+.+-+.-++.+|++|..|... . .++......+..
T Consensus 236 ~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~-------~-----------~eL~~~A~~a~~-- 295 (713)
T PF05622_consen 236 HLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQE-------N-----------EELQAEAREARA-- 295 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-----------HHHHHHHHHHHH--
Confidence 34455666777766655555555666666677777777777766665 2 122222333333
Q ss_pred HHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHh
Q 000113 1726 EELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKV 1805 (2159)
Q Consensus 1726 ~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV 1805 (2159)
|.+|+-.|+.+-+.+..+.-+. ..|- +|-+++.-|.+-|++|+....+|=.+.
T Consensus 296 ------------LrDElD~lR~~a~r~~klE~~v--------------e~YK-kKLed~~~lk~qvk~Lee~N~~l~e~~ 348 (713)
T PF05622_consen 296 ------------LRDELDELREKADRADKLENEV--------------EKYK-KKLEDLEDLKRQVKELEEDNAVLLETK 348 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------HhhhHHHHHHHHHHHHHHHHHH--------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333322211 1354 477888889999999999888877777
Q ss_pred hhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000113 1806 YEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQ 1885 (2159)
Q Consensus 1806 ~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k 1885 (2159)
..+.++..+.+-.+. +++.+++++...+.-- +.+.+..+.-..++....+++..|+++...-
T Consensus 349 ~~LEeel~~~~~~~~----qle~~k~qi~eLe~~l--------------~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l 410 (713)
T PF05622_consen 349 AMLEEELKKARALKS----QLEEYKKQIQELEQKL--------------SEESRRADKLEFENKQLEEKLEALEEEKERL 410 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788887765443 3445666555444221 1122222222334444556666666666666
Q ss_pred HHHHHHHHhhhhhhhh
Q 000113 1886 NEEIKRCKDYLSEVVL 1901 (2159)
Q Consensus 1886 ~~ei~q~k~~isel~l 1901 (2159)
..|...+++-+.||.+
T Consensus 411 ~~e~~~L~e~~eeL~~ 426 (713)
T PF05622_consen 411 QEERDSLRETNEELEC 426 (713)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHhhh
Confidence 6667777776666643
No 86
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.66 E-value=34 Score=45.43 Aligned_cols=157 Identities=20% Similarity=0.351 Sum_probs=82.9
Q ss_pred cccccccccccchhhhHHHHhhHHHHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhH
Q 000113 1545 EFFLSHSHLSYENLSLKKELQRKEVLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHE 1624 (2159)
Q Consensus 1545 e~~~~~~~l~~en~~l~~El~RK~~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~ 1624 (2159)
++.++|-++..+=..|+..+..=-..++||-+| +......++.+.++.|-+.|+ .|...| +
T Consensus 246 gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~-----~~~~~~~~i~~~Id~Lyd~le---kE~~A~-----------~ 306 (569)
T PRK04778 246 GYHLDHLDIEKEIQDLKEQIDENLALLEELDLD-----EAEEKNEEIQERIDQLYDILE---REVKAR-----------K 306 (569)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHhcChH-----HHHHHHHHHHHHHHHHHHHHH---HHHHHH-----------H
Confidence 344566666666667777887777888888655 233334455555555554443 333332 2
Q ss_pred HHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHhhhcccch
Q 000113 1625 KLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLK----------KSEAEEHLEEQKEVITGLEKEILHRTSEDK 1694 (2159)
Q Consensus 1625 ~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~----------k~~~e~~L~e~~~vie~LE~eil~l~s~~~ 1694 (2159)
..+..... ....+..+..+|..|...+..+-.. ...++++|.+-.+..+.++..+-.-...
T Consensus 307 ~vek~~~~-------l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~-- 377 (569)
T PRK04778 307 YVEKNSDT-------LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIA-- 377 (569)
T ss_pred HHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--
Confidence 22222222 2244555666777777777655444 3333344444444344333333322222
Q ss_pred hhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHH
Q 000113 1695 KLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDK 1748 (2159)
Q Consensus 1695 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~k 1748 (2159)
.+.+.+.++.+.+.|+.+..++..++..|-.|...
T Consensus 378 -------------------ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 378 -------------------YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666655543
No 87
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.62 E-value=4.2 Score=55.53 Aligned_cols=212 Identities=23% Similarity=0.304 Sum_probs=140.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhH
Q 000113 1589 KDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEA 1668 (2159)
Q Consensus 1589 kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~ 1668 (2159)
+|...++......+++-..+++.+-.+...+..-+..|+..+.-.+..+......++.|-.++.+|++.+...+..-..+
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~ 869 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKA 869 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 35556666677777777778888888888888888888888888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHH
Q 000113 1669 EEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDK 1748 (2159)
Q Consensus 1669 e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~k 1748 (2159)
..+|.+.++.......+|-.+-.+.++.++ .-..+-..++.+..++.++..|...+..+|-.|-.
T Consensus 870 ~~el~~~k~k~~~~dt~i~~~~~~~e~~~~--------------e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~- 934 (1174)
T KOG0933|consen 870 QAELKDQKAKQRDIDTEISGLLTSQEKCLS--------------EKSDGELERKKLEHEVTKLESEKANARKEVEKLLK- 934 (1174)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhHHHHHHH--------------HhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHH-
Confidence 999999999999999999765555222211 12233334555556666666666655555544333
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhhhhh------hhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhH
Q 000113 1749 LAMAYALADENEAIAVEARQELEASKLYAE------QKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSL 1822 (2159)
Q Consensus 1749 le~a~a~a~e~eaia~ea~q~ae~~k~yae------~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~l 1822 (2159)
+.+-|.-|-|-------.|-= +--++.+-|---.+.||.|||- +|-.|=+.+
T Consensus 935 ---------k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~---~~m~mle~~---------- 992 (1174)
T KOG0933|consen 935 ---------KHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNP---KNMDMLERA---------- 992 (1174)
T ss_pred ---------hccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCH---HHHHHHHHH----------
Confidence 333333222211111111211 1236778888888999999886 444444433
Q ss_pred HHHHHHHHHhhhhcc
Q 000113 1823 ELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1823 e~e~~~~~~~~~~v~ 1837 (2159)
|...-+|+..+-+|+
T Consensus 993 E~~~~~lk~k~~~Ie 1007 (1174)
T KOG0933|consen 993 EEKEAALKTKKEIIE 1007 (1174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556665555555
No 88
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.62 E-value=33 Score=45.17 Aligned_cols=211 Identities=21% Similarity=0.232 Sum_probs=134.5
Q ss_pred hhhHHHHhhHHHHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhh-hhHH----------HHHHhHHH
Q 000113 1558 LSLKKELQRKEVLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKAS-QLDN----------LLLQHEKL 1626 (2159)
Q Consensus 1558 ~~l~~El~RK~~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss-~l~d----------~~~~~~~L 1626 (2159)
..++++|...+.-+++|-=++ +-++|.+-+...-..-+..|+.||..... .++. +-..-+.+
T Consensus 214 ~~~~~~leeae~~l~~L~~e~-------~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~ 286 (522)
T PF05701_consen 214 EEWEKELEEAEEELEELKEEL-------EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASA 286 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHH
Confidence 466777888888888887777 34456777777777777778877766543 3332 11123444
Q ss_pred HhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhh
Q 000113 1627 EASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAED 1706 (2159)
Q Consensus 1627 E~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~ 1706 (2159)
..+|.+...-|-.+++.+..|..-..-||..|+..=.....+.+....-.-.|.+|+.++..+.+-
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~e-------------- 352 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSE-------------- 352 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH--------------
Confidence 555666666666666777777777777777777777777777777777777888888888866665
Q ss_pred hhhccchhhHHHHHHHHHHHHH-------HHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhh
Q 000113 1707 LRIVTSDRDKLCEEVESVEEEL-------RKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQ 1779 (2159)
Q Consensus 1707 ~~~~~~~~~~~~~~v~~l~~~l-------~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~ 1779 (2159)
|..+...+.+..+.+..+...| .....+..-.+.|+..++.-.+-+.+-....|.-..-|+++.++.|.=..-
T Consensus 353 Lea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~ 432 (522)
T PF05701_consen 353 LEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEAL 432 (522)
T ss_pred HHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444 444444455556666666666666666666677777777777777755444
Q ss_pred hhHHHHHHHH
Q 000113 1780 KEEEVKILEH 1789 (2159)
Q Consensus 1780 keeevk~le~ 1789 (2159)
--.++|.|-.
T Consensus 433 Ala~ik~l~e 442 (522)
T PF05701_consen 433 ALAEIKALSE 442 (522)
T ss_pred HHHHHHHhhc
Confidence 4555665544
No 89
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.58 E-value=40 Score=46.01 Aligned_cols=141 Identities=30% Similarity=0.312 Sum_probs=85.8
Q ss_pred HHHHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhH
Q 000113 1567 KEVLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDT 1646 (2159)
Q Consensus 1567 K~~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ 1646 (2159)
|-.-.-|..=--+||||||+---.....+.++=.-+.+++++|.. .+...+-
T Consensus 8 ~~~~~~g~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~----------------------------~~~e~~r 59 (717)
T PF09730_consen 8 KKVAKDGEEREESLLQESASKEAYLQQRILELENELKQLRQELSN----------------------------VQAENER 59 (717)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHH
Confidence 444556777777999999994333333333333333333333333 4455556
Q ss_pred HhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHH
Q 000113 1647 LSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVI-------TGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCE 1719 (2159)
Q Consensus 1647 ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vi-------e~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1719 (2159)
|...|.+|+.-.+.+-..+..+.+++-|-|-== --||.|-+- +++--|
T Consensus 60 l~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENis-------------------------lQKqvs 114 (717)
T PF09730_consen 60 LSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENIS-------------------------LQKQVS 114 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-------------------------HHHHHH
Confidence 677777777777777777777777776654322 234555442 344445
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhH
Q 000113 1720 EVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENE 1760 (2159)
Q Consensus 1720 ~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~e 1760 (2159)
.++.-|=++.-+--|=..|.+|+-.|+-+||.|..|=+=.|
T Consensus 115 ~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae 155 (717)
T PF09730_consen 115 VLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAE 155 (717)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666788888889999988887765333
No 90
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.36 E-value=38 Score=47.58 Aligned_cols=29 Identities=7% Similarity=0.260 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 000113 1883 EEQNEEIKRCKDYLSEVVLHSEAQASQYQ 1911 (2159)
Q Consensus 1883 ~~k~~ei~q~k~~isel~lh~eaqa~~y~ 1911 (2159)
+.|+.-+..+=.|..+|.---+.+-+.|+
T Consensus 464 ~~k~dkvs~FG~~m~~lL~~I~r~~~~f~ 492 (1074)
T KOG0250|consen 464 KTKTDKVSAFGPNMPQLLRAIERRKRRFQ 492 (1074)
T ss_pred hcccchhhhcchhhHHHHHHHHHHHhcCC
Confidence 34555556666677777766666666654
No 91
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.17 E-value=10 Score=44.56 Aligned_cols=181 Identities=17% Similarity=0.244 Sum_probs=113.5
Q ss_pred hhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccch
Q 000113 1634 ENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSD 1713 (2159)
Q Consensus 1634 ~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~ 1713 (2159)
..++...+..+...-.++.+|+..++++.... .+..+|++++|+-|.+|.....+--. .--.++.-++.+
T Consensus 8 d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~-------~~m~~i~~e~Ek~i~~~i~e~~~~~~---~~~~~i~~~~~e 77 (207)
T PF05010_consen 8 DAAIKKVQEEVAEKEEEEQELKKKYEELHKEN-------QEMRKIMEEYEKTIAQMIEEKQKQKE---LSEAEIQKLLKE 77 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHhhHH---hHHHHHHHHHhh
Confidence 34444444444444466777777766554433 35567778888877776555111100 011223334444
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEE 1793 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~svee 1793 (2159)
.+++...+.+++..++++-.-=..+..-|.-++.-=+.-...+.+.++-...-.|.-++=|.+|++| |+..-+|
T Consensus 78 rdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeek------L~~ANee 151 (207)
T PF05010_consen 78 RDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEK------LEKANEE 151 (207)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 5555555555555555555555555555544444444445566666666667778888999999976 6788888
Q ss_pred HHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHH
Q 000113 1794 LEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALR 1830 (2159)
Q Consensus 1794 le~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~ 1830 (2159)
++....-.+..+--+.-.+++..|...||+..|..-.
T Consensus 152 i~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~ 188 (207)
T PF05010_consen 152 IAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKT 188 (207)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888899999999999988765444
No 92
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.10 E-value=23 Score=46.77 Aligned_cols=231 Identities=18% Similarity=0.285 Sum_probs=142.3
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHH
Q 000113 1642 GTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEV 1721 (2159)
Q Consensus 1642 ~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1721 (2159)
-.+..|..|+++||..+.+.......+.+.+.+....+-.||.|+-.+..- -..+-+|+.-+..+-+++-+.|
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr-------~~~le~e~~~Lk~en~rl~~~l 185 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRR-------IKALEDELKRLKAENSRLREEL 185 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHH-------HHHHHHHHHHHHHHhhhhHHHH
Confidence 567788999999999999998888999999999999999999998877665 2233345555666677777777
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhh--hHHHHHHHHHH-HH--------hhhhhhhhhhHHHHHHHHh
Q 000113 1722 ESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADE--NEAIAVEARQE-LE--------ASKLYAEQKEEEVKILEHS 1790 (2159)
Q Consensus 1722 ~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e--~eaia~ea~q~-ae--------~~k~yae~keeevk~le~s 1790 (2159)
..+...|.+-+.-|--++-.+-.|.+.|+-....=+. +|-++.-+|-. ++ =...-.|=+.+-=.+..+.
T Consensus 186 ~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~n 265 (546)
T KOG0977|consen 186 ARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQN 265 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777777777777777665422110 11111111111 12 2222334444555666777
Q ss_pred HHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHH-------HhhhhccccccccccccccCCCchhhhhhhHHH
Q 000113 1791 IEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALR-------RRLSTVQNFSDIVDSENINAGHTEDQMSRKLQD 1863 (2159)
Q Consensus 1791 veele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~-------~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~ 1863 (2159)
-+++|.+ ..+||.+++.-++|..+.-...-.|+..+| -++..+++... .+.+..++
T Consensus 266 R~diE~~---Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~--------------~L~~~I~d 328 (546)
T KOG0977|consen 266 RKDIESW---YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNS--------------ALEKRIED 328 (546)
T ss_pred HHHHHHH---HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccCh--------------hHHHHHHH
Confidence 7888876 566999999666665555544444444444 34444442211 22233222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhh
Q 000113 1864 RLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEV 1899 (2159)
Q Consensus 1864 ~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel 1899 (2159)
-...|. +.-+.-+..+++||++|..+.+-...|
T Consensus 329 L~~ql~---e~~r~~e~~L~~kd~~i~~mReec~~l 361 (546)
T KOG0977|consen 329 LEYQLD---EDQRSFEQALNDKDAEIAKMREECQQL 361 (546)
T ss_pred HHhhhh---hhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 222111 223445667788888888777765543
No 93
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.95 E-value=54 Score=45.72 Aligned_cols=280 Identities=19% Similarity=0.201 Sum_probs=166.0
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHH---HHHHHHHhhhhhhhhh---
Q 000113 1707 LRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAV---EARQELEASKLYAEQK--- 1780 (2159)
Q Consensus 1707 ~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~---ea~q~ae~~k~yae~k--- 1780 (2159)
.+|+-...+++.-....+++-.+++.-|+++|+.|+-.+..-++.-. -|||+-+. -++|. .++|+|.+
T Consensus 417 ~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~---~e~e~~~q~ls~~~Q~---~~et~el~~~i 490 (1195)
T KOG4643|consen 417 HEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQS---LENEELDQLLSLQDQL---EAETEELLNQI 490 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHhHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 45555557788888888999999999999999999877654333221 12333222 22332 12333332
Q ss_pred hHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhh
Q 000113 1781 EEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRK 1860 (2159)
Q Consensus 1781 eeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~ 1860 (2159)
...=|+|.++.-||.+-- +....+|+-..--.++-+-+--.++-|++.+.+.+ .+ -+|
T Consensus 491 knlnk~L~~r~~elsrl~----a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE-------~E-----------Na~ 548 (1195)
T KOG4643|consen 491 KNLNKSLNNRDLELSRLH----ALKNELKEQYKTCDIQYELLSNKLEELEELLGNLE-------EE-----------NAH 548 (1195)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HH-----------HHH
Confidence 345678888887776533 33333333222222222222233344554444444 22 377
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccc
Q 000113 1861 LQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQTNLSNTTAAAAPAQD 1940 (2159)
Q Consensus 1861 ~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~~~~~~~~~~~~~~ 1940 (2159)
|..++--|-..-.++..|+....++|-.=.-.|.||--|| |..++++-=+.|-|
T Consensus 549 LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~------alrrhke~LE~e~m-------------------- 602 (1195)
T KOG4643|consen 549 LLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALN------ALRRHKEKLEEEIM-------------------- 602 (1195)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh--------------------
Confidence 8777777777777888899888888888888888887777 45555554444444
Q ss_pred cccccccccCCCCCCcchhhHHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhcchhHHHHhhhccc
Q 000113 1941 KIEKSSTRLRGSSSPFRCIASVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAESMTHDVIRDLLGVK 2020 (2159)
Q Consensus 1941 k~EK~s~rtRGS~SPFrCI~glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eSMTHDVIRdLLGVK 2020 (2159)
|++++.+=+--|-+|+-|= ..+-..=+|--|..|...-
T Consensus 603 --------------------------nQql~~d~~~~kr~ie~Lr--------------~~~~kll~~Kkdr~ree~k-- 640 (1195)
T KOG4643|consen 603 --------------------------NQQLFEDPIPLKRDIEWLR--------------RKESKLLKEKKDRNREETK-- 640 (1195)
T ss_pred --------------------------hhhhhhcCCchhhhHHHHH--------------HHHHhhcchhHHHHHHHHh--
Confidence 3334433333333333221 0011111222333333322
Q ss_pred ccccchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhH--HhhhhhHHHHHHHHHHH
Q 000113 2021 LDMTNYANLIDQE-HVQKLVVAAQQQTQELLAKEQIILNLRKRIEDLIEEHE---SCTS--ILKQREADILAAQINVE 2092 (2159)
Q Consensus 2021 ldmTnyA~liD~~-q~~kl~e~a~~~~~e~~~ke~e~~~Lk~q~~~lieEr~---s~~~--ei~~k~ad~~aaqi~~e 2092 (2159)
.+.|.. +|..+++++-.+-.+|+++-.++.++..++-+ ||+ +|.+ +++..+..+.+.|+..+
T Consensus 641 -------el~~ekl~ve~l~e~l~~lp~~fkt~n~e~l~V~sn~lE---e~qr~~~~~sn~~~~l~q~~i~~~q~~~e 708 (1195)
T KOG4643|consen 641 -------ELMDEKLQVEDLQEKLRELPLEFKTKNDEILMVGSNILE---ERQRLGGCKSNAEIDLLQVSIRNSQIQGE 708 (1195)
T ss_pred -------hccccchhHHHHHHHHHhCchhhccccchhhhhhhhhhh---hhhhhccccccchHHHHHHHHhcccccch
Confidence 455555 89999999999999999988999999999887 554 4554 45667767777666543
No 94
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.78 E-value=0.013 Score=79.15 Aligned_cols=289 Identities=24% Similarity=0.329 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHH-------hhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHH
Q 000113 1599 FSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVI-------AKGTIDTLSDQNADLRVLLKDLYLKKSEAEEH 1671 (2159)
Q Consensus 1599 ~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~-------~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~ 1671 (2159)
--.|..++.+|+.=.-.-.+++...++||+.|.+....|-. +...+..+..+-.+|...|++.-..+..+.+.
T Consensus 524 qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~ 603 (859)
T PF01576_consen 524 QRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQ 603 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45677888888776667778889999999999999887777 44455555555555555555555555555544
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHH
Q 000113 1672 LEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAM 1751 (2159)
Q Consensus 1672 L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~ 1751 (2159)
+-.-..=+..|+.|+-.+.+. .++.-..=|..-.+...+.+-|..+...-..++.++-.|+.+|..|...|+-
T Consensus 604 ~~~~e~r~~~l~~elee~~~~-------~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE 676 (859)
T PF01576_consen 604 LAVSERRLRALQAELEELREA-------LEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEE 676 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444455677777777765 3222223334445556666666666555566667777777777777777766
Q ss_pred HHHhhhhhHHHHHHHHHHHH--hhh-----hhhhhhhHHHHHHHHhHHHHHhH---------------HHHHHhHhhhhh
Q 000113 1752 AYALADENEAIAVEARQELE--ASK-----LYAEQKEEEVKILEHSIEELEHT---------------VNALEKKVYEMN 1809 (2159)
Q Consensus 1752 a~a~a~e~eaia~ea~q~ae--~~k-----~yae~keeevk~le~sveele~t---------------in~LE~kV~~~k 1809 (2159)
+..-++..+--+--|...+. +.- -....=+-.-+-||+.|-+|-.- |..||.+|.+|.
T Consensus 677 ~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE 756 (859)
T PF01576_consen 677 EQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELE 756 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHH
Confidence 55444433322222211111 000 01111112223333333333322 233333333333
Q ss_pred hhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 000113 1810 GEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEI 1889 (2159)
Q Consensus 1810 ~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei 1889 (2159)
.+.+--. |....+..+ ---+.|.+.+-.....+-++++.-+...+.....-|
T Consensus 757 ~~Le~E~-------------r~~~~~~k~---------------~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~ 808 (859)
T PF01576_consen 757 EELESEQ-------------RRRAEAQKQ---------------LRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKL 808 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-------------HHHHHHHHH---------------HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3222111 111111111 113456676767777788888888888888888889
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 000113 1890 KRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQT 1926 (2159)
Q Consensus 1890 ~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~ 1926 (2159)
++||.-|-| +|.+++.+..||.-+.+.+.+..-
T Consensus 809 k~~krq~ee----aEe~~~~~~~k~Rk~q~elee~~e 841 (859)
T PF01576_consen 809 KQLKRQLEE----AEEEASRNLAKYRKLQRELEEAEE 841 (859)
T ss_dssp --------------------------SSSSHHHHHTC
T ss_pred HHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 688999999999988888776543
No 95
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.62 E-value=60 Score=45.41 Aligned_cols=32 Identities=13% Similarity=-0.028 Sum_probs=20.3
Q ss_pred hhhhhhhhhhhhcchhHHHHhhhcccccccchh
Q 000113 1995 VCMLNTRLAAAESMTHDVIRDLLGVKLDMTNYA 2027 (2159)
Q Consensus 1995 i~~LnarLAa~eSMTHDVIRdLLGVKldmTnyA 2027 (2159)
+=-+.+.++.++.+...+-+.+-.. +-+++|.
T Consensus 595 ~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~ 626 (908)
T COG0419 595 LKELKKKLKELEERLSQLEELLQSL-ELSEAEN 626 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHH
Confidence 3445666778888888777777666 3334443
No 96
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.59 E-value=52 Score=46.74 Aligned_cols=127 Identities=23% Similarity=0.277 Sum_probs=83.2
Q ss_pred hhHHHHhhHHHHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHH-------Hhhhh
Q 000113 1559 SLKKELQRKEVLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKL-------EASLT 1631 (2159)
Q Consensus 1559 ~l~~El~RK~~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~L-------E~~L~ 1631 (2159)
.|+.++.++.+=++++ |.--+|..|..++...+-..|..-..++..++...-.+-.+.+-+ +..-.
T Consensus 512 ~l~~~~~~~~eele~~-------q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~ 584 (1317)
T KOG0612|consen 512 KLEALVRQLEEELEDA-------QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENR 584 (1317)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccc
Confidence 3444555555555544 666666666666666666666555444444444443333333322 22333
Q ss_pred chhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 000113 1632 DTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSE 1692 (2159)
Q Consensus 1632 d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~ 1692 (2159)
+-...+...+++...|+.+|..++..++..--......+...+-+.=|.+|+..+.+++-.
T Consensus 585 ~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~ 645 (1317)
T KOG0612|consen 585 DLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKE 645 (1317)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 5555666688888999999999999999888888888888888888888888888777666
No 97
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.11 E-value=72 Score=45.11 Aligned_cols=119 Identities=22% Similarity=0.213 Sum_probs=70.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhh
Q 000113 1756 ADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLST 1835 (2159)
Q Consensus 1756 a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~ 1835 (2159)
|--|-+-|.+|.+.|.+-|.-|..-+...++|-. -+|.+-+.||++....-.=-+|-...|++-+.=|..-...
T Consensus 1635 ~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~---~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~k--- 1708 (1758)
T KOG0994|consen 1635 AAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQK---YYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEK--- 1708 (1758)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3345667788888888888888888888877654 4555666677765433222223333333322222211111
Q ss_pred ccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhh
Q 000113 1836 VQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLH 1902 (2159)
Q Consensus 1836 v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh 1902 (2159)
-..|++-+.....-...+..+.-+++..++++.+.-.||.|=++|
T Consensus 1709 ----------------------l~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~rv~~ 1753 (1758)
T KOG0994|consen 1709 ----------------------LDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINERVLY 1753 (1758)
T ss_pred ----------------------HHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Confidence 122233333334444555666677788888888999999998776
No 98
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.04 E-value=0.087 Score=60.75 Aligned_cols=50 Identities=34% Similarity=0.557 Sum_probs=29.9
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.|+||.-+... +++..|..+ ..+...--..||. +|-||++|+||||=|.+
T Consensus 4 ~~tFdnfv~g~-~N~~a~~~~-~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFVVGE-SNELAYAAA-KAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS--TT-TTHHHHHHH-HHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCccccCCcCC-cHHHHHHHH-HHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 59999876543 455666433 3344441122444 78899999999997755
No 99
>PRK06893 DNA replication initiation factor; Validated
Probab=91.67 E-value=0.13 Score=59.51 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=33.2
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.++||..++... ..-+ ..+.+.+-.++|..++-||++|+||||-+.+
T Consensus 12 ~~~fd~f~~~~~-~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 12 DETLDNFYADNN-LLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred cccccccccCCh-HHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 489999886552 2222 2233444457888899999999999999865
No 100
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.55 E-value=14 Score=43.02 Aligned_cols=173 Identities=28% Similarity=0.316 Sum_probs=104.2
Q ss_pred hhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHhhhc
Q 000113 1614 SQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDL---YLKKSEAEEHLEEQKEVITGLEKEILHRT 1690 (2159)
Q Consensus 1614 s~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~---~~~k~~~e~~L~e~~~vie~LE~eil~l~ 1690 (2159)
+.+.|+=.++++|.++-+.....+-.+.+.-..|..++.+||..+..+ +-.-..++++|++-+....+||.+=-.|-
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~ 87 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLL 87 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566668888888888888888778888889999999999887654 44445568899998888888887754333
Q ss_pred ccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHH-------HHHHHHhhhhhHHHH
Q 000113 1691 SEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDK-------LAMAYALADENEAIA 1763 (2159)
Q Consensus 1691 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~k-------le~a~a~a~e~eaia 1763 (2159)
.- .|-+--.-+.+-.-|+.|+++-.++.-++|.++..+..|..+ +=--.++---++|++
T Consensus 88 aq--------------~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l 153 (193)
T PF14662_consen 88 AQ--------------ARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAIL 153 (193)
T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222223344555556666666666666666555555444321 111223334455555
Q ss_pred HHH-HHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhh
Q 000113 1764 VEA-RQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEM 1808 (2159)
Q Consensus 1764 ~ea-~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~ 1808 (2159)
.|- +++-+.-++-+| .. --++||-.-|.-||.+++-|
T Consensus 154 ~e~t~~i~eL~~~ieE-----y~---~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 154 SERTQQIEELKKTIEE-----YR---SITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHhhHHHHHHHHHH-----HH---HHHHHHHHHHHHHHHHHHhh
Confidence 543 333333222222 11 12567777777788777654
No 101
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.53 E-value=11 Score=43.92 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=77.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhC--------hHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH
Q 000113 648 AEKYLMDENIALKEEIQLLQARIDRN--------PELTRFALENIRLLEQLQLFQSFYE---QGEREKLLAELAELRDQL 716 (2159)
Q Consensus 648 ~E~~L~~En~~lk~Ei~~Lq~~~d~~--------~Ev~~~~~En~~L~eel~~~~~f~~---~gere~l~~ei~~Lr~ql 716 (2159)
.++.|-.-.....+||..|+.++-+. ..+-....+..++.++++.++...+ .+||+.|..+++.+...|
T Consensus 55 ~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l 134 (194)
T PF15619_consen 55 TEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKL 134 (194)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Confidence 34444444455555666655544332 3333455688889999999998754 489999999999999987
Q ss_pred H------HHhhccccccccc-chhhhhhHHHHHHHHhhhhHHHHHHHHHHHHhhhc
Q 000113 717 L------DIVEGKERFSSRH-ENQENDTTTELENCRNMNSKLMREVEELRTELRNC 765 (2159)
Q Consensus 717 ~------~~~~~~~~~~~~~-~~~~~~~~~~~~~c~~~~~~l~r~~~~~~~~~~~~ 765 (2159)
. ..|+.++....++ ..++....+....+..+...|..||..|+..|.+.
T Consensus 135 ~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 135 QEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3444444443222 34555666666677777888888888888877643
No 102
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.26 E-value=86 Score=44.34 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=16.9
Q ss_pred HHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhh
Q 000113 1801 LEKKVYEMNGEVERHHLIRDSLELEIQALRRRLS 1834 (2159)
Q Consensus 1801 LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~ 1834 (2159)
.|+|...++.||+--+-+..+|..|++.++....
T Consensus 399 ~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 399 RENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555554433
No 103
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.12 E-value=25 Score=47.09 Aligned_cols=146 Identities=23% Similarity=0.329 Sum_probs=93.7
Q ss_pred HhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHH
Q 000113 1789 HSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQL 1868 (2159)
Q Consensus 1789 ~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l 1868 (2159)
.-|+.|+.-|..=++++-.|..+-+.||. .|..|+..||.....-+ .+.++ +..++
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~---pL~~e~r~lk~~~~~~~-----------------~e~~~----~~~~i 449 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRA---PLIEEYRRLKEKASNRE-----------------SESKQ----KLQEI 449 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhcc-----------------hHHHH----HHHHH
Confidence 45677888888888888888888887765 77788888885443222 11112 34667
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccccc
Q 000113 1869 QEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQTNLSNTTAAAAPAQDKIEKSSTR 1948 (2159)
Q Consensus 1869 ~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~~~~~~~~~~~~~~k~EK~s~r 1948 (2159)
...+..|+.+..++..|++.++|++...--+.=- ..-+.|=+.-.++=.=|+.+|.|
T Consensus 450 k~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~KQk~e--------------------- 506 (594)
T PF05667_consen 450 KELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTRRILEIVKNIRKQKEE--------------------- 506 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHhHHHHHHH---------------------
Confidence 7888888888888888888888876644333221 33455555544444444444444
Q ss_pred cCCCCCCcchhhHHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhcchhHHH
Q 000113 1949 LRGSSSPFRCIASVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAESMTHDVI 2013 (2159)
Q Consensus 1949 tRGS~SPFrCI~glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eSMTHDVI 2013 (2159)
|...-.=-..=||||=.|..||--+-.-|-|.|
T Consensus 507 --------------------------------I~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 507 --------------------------------IEKILSDTRELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 222222223558999999999987777766665
No 104
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.90 E-value=15 Score=49.21 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=69.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccc
Q 000113 1858 SRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQTNLSNTTAAAAP 1937 (2159)
Q Consensus 1858 ~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~~~~~~~~~~~ 1937 (2159)
.+.+.+...++.++..+++.++.+++..+.++.+....+.++.-.-....-..+++...||+=+.+++.+
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e---------- 277 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAA---------- 277 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH----------
Confidence 3455555556666666666666666666666666666666655433333344444445555544433333
Q ss_pred ccccccccccccCCCCCCcchhhHHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhh
Q 000113 1938 AQDKIEKSSTRLRGSSSPFRCIASVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCM 1997 (2159)
Q Consensus 1938 ~~~k~EK~s~rtRGS~SPFrCI~glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~ 1997 (2159)
....++.-.+--+..-||-=++.++.+...-=+.|.- +. +..-...+...|++.||-
T Consensus 278 -~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~-~~-~~~~~~~~l~~~~~~i~~ 334 (650)
T TIGR03185 278 -RKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQ-SQ-QNQLTQEELEERDKELLE 334 (650)
T ss_pred -HHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHH
Confidence 1233334444555678998888666554443333321 22 444455566677777773
No 105
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=90.42 E-value=76 Score=42.26 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHH
Q 000113 1715 DKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYA 1754 (2159)
Q Consensus 1715 ~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a 1754 (2159)
......|+....+..++-.+=+.|++|+-.|+.|++.|..
T Consensus 95 ~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k 134 (546)
T KOG0977|consen 95 ATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEK 134 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444456666677777777778888888888888888743
No 106
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.40 E-value=88 Score=42.97 Aligned_cols=51 Identities=24% Similarity=0.226 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHhhH
Q 000113 1047 TENVGRAAKVCIEKDETILLLQKSLEEAQKMVVEMKEKCISLKGATIALNE 1097 (2159)
Q Consensus 1047 sEhV~~a~r~~iEKE~~I~~Lq~~LEdA~~m~~dme~kL~SLrgAtlainE 1097 (2159)
.+.+....+.+-+..+.|..|++.|..+...++|-.-+|++-....++++|
T Consensus 404 ~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSE 454 (717)
T PF09730_consen 404 KEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSE 454 (717)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355555666777788899999999999999999999999998888777764
No 107
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.76 E-value=56 Score=45.10 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=61.1
Q ss_pred hhHHHHhhhhc-----ccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHH-
Q 000113 1565 QRKEVLLQGLL-----FDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALV- 1638 (2159)
Q Consensus 1565 ~RK~~~~kGL~-----FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~- 1638 (2159)
.|++|=+|=+- |-|.=|||--| +||.....||+||-.---+..++..-...+-.+++|+-+++-
T Consensus 246 kR~EDk~Kl~ElekmkiqleqlqEfkS----------kim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEm 315 (1243)
T KOG0971|consen 246 KRAEDKAKLKELEKMKIQLEQLQEFKS----------KIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEM 315 (1243)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666555444 44667777766 678888888888876666666666666655555555554443
Q ss_pred --H----hhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 000113 1639 --I----AKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQ 1675 (2159)
Q Consensus 1639 --~----~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~ 1675 (2159)
. |.+.-+.|-.|=.-|...++++-..---+.+|++++
T Consensus 316 aTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 316 ATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 666666666555555555555544444444444444
No 108
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.70 E-value=86 Score=41.82 Aligned_cols=166 Identities=22% Similarity=0.305 Sum_probs=105.5
Q ss_pred HHHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHH--------
Q 000113 1568 EVLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVI-------- 1639 (2159)
Q Consensus 1568 ~~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~-------- 1639 (2159)
+.-++++.=.+.=|-+|.. +.+.+++++-.-...++..|..++..+-. ....||.+|.+.+.-...
T Consensus 114 e~~i~~i~~~l~~L~~~e~---~nr~~i~~l~~~y~~lrk~ll~~~~~~G~---a~~~Le~~L~~ie~~F~~f~~lt~~G 187 (560)
T PF06160_consen 114 EEDIKEILDELDELLESEE---KNREEIEELKEKYRELRKELLAHSFSYGP---AIEELEKQLENIEEEFSEFEELTENG 187 (560)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhch---hHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3334444444444555554 67788899999999999999999998887 556777777777665554
Q ss_pred ----hhhhhhHHhhhhHHHHHHHHHHHH---H-HhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhcc
Q 000113 1640 ----AKGTIDTLSDQNADLRVLLKDLYL---K-KSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVT 1711 (2159)
Q Consensus 1640 ----~~~~~~~ls~eN~eLr~~l~~~~~---~-k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~ 1711 (2159)
|++-+..+..+-.+|...++.+=. . +...-++|+|-+.-+..|..+=..+.-. .|.+.+..+.
T Consensus 188 D~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~---------~i~~~i~~i~ 258 (560)
T PF06160_consen 188 DYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHL---------DIEEEIEQIE 258 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCC---------CHHHHHHHHH
Confidence 999999999999999999887533 3 4455677777777777777775555543 2223333332
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHH
Q 000113 1712 SDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLA 1750 (2159)
Q Consensus 1712 ~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle 1750 (2159)
....+....++.+ +|+.+...-+.+..+|-.|-+-|+
T Consensus 259 ~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le 295 (560)
T PF06160_consen 259 EQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILE 295 (560)
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222 455555555555555555555544
No 109
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.61 E-value=4.7 Score=52.88 Aligned_cols=93 Identities=28% Similarity=0.437 Sum_probs=73.8
Q ss_pred HHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhH
Q 000113 1782 EEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKL 1861 (2159)
Q Consensus 1782 eevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~ 1861 (2159)
.|+...++.+..++.||.-|+.++.+|+.++++++=.-+.|+.+|..++.++- . .
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~----------------------~-- 469 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-D----------------------K-- 469 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----------------------H--
Confidence 45677888999999999999999999999999988777788888887776553 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhh
Q 000113 1862 QDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEV 1899 (2159)
Q Consensus 1862 ~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel 1899 (2159)
--+-+++..-.++|..|++++.++.++|.+++.-+.+|
T Consensus 470 ~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 470 VRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234456667899999999999999999999877665
No 110
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=89.56 E-value=47 Score=45.75 Aligned_cols=121 Identities=27% Similarity=0.383 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHh
Q 000113 1717 LCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEH 1796 (2159)
Q Consensus 1717 ~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~ 1796 (2159)
.......++++|..+-.++..|..++-...+++++.+..-.|.|.-..+.+-..+..+--...-|.+++-..-+.+.||+
T Consensus 587 ~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~ 666 (769)
T PF05911_consen 587 DTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLET 666 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445678889999999999999999999999999999999999988888877776666666666666666555555555
Q ss_pred -------HHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcc
Q 000113 1797 -------TVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1797 -------tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
-++.|-.||+-|.+|++.-|.--++++..-+.|..+|....
T Consensus 667 ~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 667 RLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence 46677778899999999888888887787778877777765
No 111
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.12 E-value=1.2e+02 Score=42.65 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHhhhhhh
Q 000113 1862 QDRLLQLQEAHHRIQLLERE--KEEQNEEIKRCKDYLSEV 1899 (2159)
Q Consensus 1862 ~~~~~~l~~a~~~i~~l~~~--~~~k~~ei~q~k~~isel 1899 (2159)
......+.....+++.+... ......++++|...+.+|
T Consensus 532 ~~~~e~l~~~~e~~~~~~~~~~~~~l~~e~~~le~~~~~l 571 (908)
T COG0419 532 EEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQEL 571 (908)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333 333344444444444443
No 112
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.10 E-value=0.19 Score=60.96 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=27.3
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
|+|..+.+--+|.|+..|+||||||.||--
T Consensus 115 ~i~~~~~~~~~GLILVTGpTGSGKSTTlAa 144 (353)
T COG2805 115 PIVRELAESPRGLILVTGPTGSGKSTTLAA 144 (353)
T ss_pred HHHHHHHhCCCceEEEeCCCCCcHHHHHHH
Confidence 688888999999999999999999999843
No 113
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.82 E-value=54 Score=46.06 Aligned_cols=261 Identities=18% Similarity=0.245 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHH
Q 000113 1594 ETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLE 1673 (2159)
Q Consensus 1594 e~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~ 1673 (2159)
++..+...+...+.++..+-.+...+..+..+++..+.+++.-|.- +-.+=.+..+=+.++..|+.+-.....++....
T Consensus 242 ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~ 320 (1141)
T KOG0018|consen 242 EIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYR 320 (1141)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHH
Confidence 3445556666666666666666666666777777777776666554 323333333445566777777788888889999
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHH-HHHHHhhhhhhhHHHHHhhHHHHHHH
Q 000113 1674 EQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEE-ELRKVSKERDKLWVEICSLNDKLAMA 1752 (2159)
Q Consensus 1674 e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~l~~~~~Erd~l~~e~~~l~~kle~a 1752 (2159)
.++.=|+.||++|..++-. ...++.-++.... -++.+...-| .-.|-..|+++-.+
T Consensus 321 ~~~~~ie~~ek~l~av~~~---------------------~~~fekei~~~~q~rg~~lnl~d~-~~~ey~rlk~ea~~- 377 (1141)
T KOG0018|consen 321 ALKETIERLEKELKAVEGA---------------------KEEFEKEIEERSQERGSELNLKDD-QVEEYERLKEEACK- 377 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhhccccCCcchH-HHHHHHHHHHHHhh-
Confidence 9999999999999977776 3444433333222 1111111111 11222333322111
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHh
Q 000113 1753 YALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRR 1832 (2159)
Q Consensus 1753 ~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~ 1832 (2159)
+++..-+.--.--..+.+..+-+.+-..+||.-++.|+ +.++|-+-.|..|..-+
T Consensus 378 ------------~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~-------~sver~~~~~~~L~~~i------ 432 (1141)
T KOG0018|consen 378 ------------EALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLK-------ESVERLDKRRNKLAAKI------ 432 (1141)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH------
Confidence 11222221112222233334444444455555444444 34455555555543221
Q ss_pred hhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 000113 1833 LSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQ 1912 (2159)
Q Consensus 1833 ~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~ 1912 (2159)
+..+|.+.+....+..-...+..++.+.++...|+..+-.-|++.. +..+-..=.+
T Consensus 433 ----------------------~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das--~dr~e~sR~~ 488 (1141)
T KOG0018|consen 433 ----------------------TSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDAS--ADRHEGSRRS 488 (1141)
T ss_pred ----------------------HHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh--hhhcccHHHH
Confidence 1233445444455555566667777777777777777766666543 3333333344
Q ss_pred HHHHHHHHHHHhhcC
Q 000113 1913 KYKTLEAMIREMQTN 1927 (2159)
Q Consensus 1913 k~k~lEaM~~~~k~~ 1927 (2159)
+-.+.=.|+..+.|+
T Consensus 489 ~~~eave~lKr~fPg 503 (1141)
T KOG0018|consen 489 RKQEAVEALKRLFPG 503 (1141)
T ss_pred HHHHHHHHHHHhCCC
Confidence 444444456777777
No 114
>PRK06526 transposase; Provisional
Probab=88.68 E-value=0.21 Score=59.17 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=31.9
Q ss_pred eceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccc
Q 000113 206 FDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 206 FD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~ 256 (2159)
||+-+.+..++..+..-...+.+. .|.| |+-||++|+||||...+-
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al 118 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHH
Confidence 444456666777666655555554 3444 899999999999998763
No 115
>PRK06620 hypothetical protein; Validated
Probab=88.26 E-value=0.26 Score=56.81 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=33.0
Q ss_pred ceeEeceecCCCCChHHHHHhhchhHHHHhhcCCC---ceeEeecccCCCcceeecc
Q 000113 202 TRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYN---SCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 202 ~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN---~TIFAYGQTGSGKTYTM~G 255 (2159)
..|+||..+...+ +...|..+.. +.+. -|+| ..+|=||++||||||-+..
T Consensus 11 ~~~tfd~Fvvg~~-N~~a~~~~~~-~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 11 SKYHPDEFIVSSS-NDQAYNIIKN-WQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCchhhEeccc-HHHHHHHHHH-HHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 3589998766554 4556665542 2221 1454 3589999999999999854
No 116
>PRK09039 hypothetical protein; Validated
Probab=88.11 E-value=14 Score=46.22 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhh
Q 000113 1666 SEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSL 1745 (2159)
Q Consensus 1666 ~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l 1745 (2159)
.=+.++++.+.+-+..|+.+|..|+.. |-.-.+--..+...|..++..++.+..+|+.|+...-.
T Consensus 42 ~fLs~~i~~~~~eL~~L~~qIa~L~e~--------------L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~- 106 (343)
T PRK09039 42 FFLSREISGKDSALDRLNSQIAELADL--------------LSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAE- 106 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 345678888888888888888886655 11111113455556667777777777777666653331
Q ss_pred HHHHHHHHHhhhhhHHHHHHH-HHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHH
Q 000113 1746 NDKLAMAYALADENEAIAVEA-RQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLEL 1824 (2159)
Q Consensus 1746 ~~kle~a~a~a~e~eaia~ea-~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~ 1824 (2159)
.++-..+-++-+... +.-++.+..|+| .--+|..|-.-|+.|+..+..||..++..+..-.-++.+-++|+.
T Consensus 107 ------~~~~~~~~~~~~~~l~~~L~~~k~~~se-~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 107 ------LAGAGAAAEGRAGELAQELDSEKQVSAR-ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred ------hhhhcchHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122333333332 334455555654 456799999999999999999999988888888777777778777
Q ss_pred HHHHH
Q 000113 1825 EIQAL 1829 (2159)
Q Consensus 1825 e~~~~ 1829 (2159)
+|++.
T Consensus 180 ~L~~a 184 (343)
T PRK09039 180 RLNVA 184 (343)
T ss_pred HHHHH
Confidence 77755
No 117
>PRK05642 DNA replication initiation factor; Validated
Probab=88.01 E-value=0.33 Score=56.46 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=29.8
Q ss_pred ceeEeceecCCCCChHHHHHhhchhHHHHhhc---CC-CceeEeecccCCCcceeecc
Q 000113 202 TRFTFDHIACEMISQEKLFRVAGLPMVENCLS---GY-NSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 202 ~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLe---Gy-N~TIFAYGQTGSGKTYTM~G 255 (2159)
..|+||.-+... ...++ ..+..... |+ +..+|=||++|+||||=+.+
T Consensus 14 ~~~tfdnF~~~~--~~~a~-----~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 14 DDATFANYYPGA--NAAAL-----GYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CcccccccCcCC--hHHHH-----HHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 358999877432 33333 33333332 22 25689999999999998754
No 118
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.88 E-value=63 Score=40.15 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=27.7
Q ss_pred HHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcc
Q 000113 1782 EEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1782 eevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
+|+.-|-..+.++...|..+.+++..+..+.++..-.-+++..+.+.+..++...+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555544444444544544444444455555555554444444
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.72 E-value=82 Score=42.99 Aligned_cols=133 Identities=22% Similarity=0.251 Sum_probs=79.1
Q ss_pred hhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhh-------hcchhHHHHhhhcccccccchhhhhhhHHHHHHH--
Q 000113 1969 EKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAA-------ESMTHDVIRDLLGVKLDMTNYANLIDQEHVQKLV-- 2039 (2159)
Q Consensus 1969 EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~-------eSMTHDVIRdLLGVKldmTnyA~liD~~q~~kl~-- 2039 (2159)
||---|-.-|.|+.||=..----|+.|+-||+|++-. ----|.+=-.|-.|.+|+|+--.-|+.-.-+.=+
T Consensus 406 EkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~i 485 (1118)
T KOG1029|consen 406 EKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMI 485 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHH
Confidence 4444555666677776666555666777777765532 2223444445566888999877666543322211
Q ss_pred -H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHH--HHHH
Q 000113 2040 -V--AAQQQTQELLAKEQIILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRER--DQLL 2101 (2159)
Q Consensus 2040 -e--~a~~~~~e~~~ke~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qr--dqlL 2101 (2159)
| ..|+++.|.++|=+-+.-=|+-+|+-+.--++-.-+-++++..|-|+...-|-++++ ||++
T Consensus 486 sei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqld 552 (1118)
T KOG1029|consen 486 SEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLD 552 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 224455555555444444455566666666666666677778888888887777763 5553
No 120
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.16 E-value=94 Score=43.50 Aligned_cols=43 Identities=33% Similarity=0.497 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHH-----hhhhhHh
Q 000113 1778 EQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVE-----RHHLIRD 1820 (2159)
Q Consensus 1778 e~keeevk~le~sveele~tin~LE~kV~~~k~e~~-----r~r~~r~ 1820 (2159)
+++.|+++-|+.|+.|....+.-+-.+.+.+|.+-+ |..+.|+
T Consensus 428 ~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 428 KEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999998888777788877654 5555555
No 121
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=86.74 E-value=1.4e+02 Score=40.68 Aligned_cols=387 Identities=21% Similarity=0.286 Sum_probs=208.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHH
Q 000113 1593 DETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHL 1672 (2159)
Q Consensus 1593 De~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L 1672 (2159)
||+++|-.-=..++.++.-| |..|+++..++-+-|.+|..|-=+|.-|-..|++-+-....+-.+-
T Consensus 85 ~EaEKIk~WKv~vesd~~qK--------------ErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~n 150 (786)
T PF05483_consen 85 KEAEKIKKWKVQVESDLKQK--------------ERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKEN 150 (786)
T ss_pred HHHHHHHHHHhhhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhh
Confidence 56677766666666666666 4556666666666777777777777777777766555544444333
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccc----hhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH-hhHH
Q 000113 1673 EEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTS----DRDKLCEEVESVEEELRKVSKERDKLWVEIC-SLND 1747 (2159)
Q Consensus 1673 ~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~-~l~~ 1747 (2159)
.-.+++-.-|= +-+..+.---+. -|+--|+.|-+.- +..+|--+|++|+ +--|-|+ -|++ .|++
T Consensus 151 naTR~lCNlLK-eT~~rsaEK~~~---yE~EREET~qly~~l~~niekMi~aFEeLR-----~qAEn~r--~EM~fKlKE 219 (786)
T PF05483_consen 151 NATRHLCNLLK-ETCQRSAEKMKK---YEYEREETRQLYMDLNENIEKMIAAFEELR-----VQAENDR--QEMHFKLKE 219 (786)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----HHHHhHH--HHHHHHHHH
Confidence 33333333221 111111110001 1112233332211 1233333333332 2223333 3443 6666
Q ss_pred HHHHHHHhhhhhHHHHH-HHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHH
Q 000113 1748 KLAMAYALADENEAIAV-EARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEI 1826 (2159)
Q Consensus 1748 kle~a~a~a~e~eaia~-ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~ 1826 (2159)
.++.-.-|-++-.+=.- --.|+| .--+--.+||.++|-|---++|=-.-|++||..-..-.+=...-.--+++|..||
T Consensus 220 ~~~k~~~leeey~~E~n~kEkqvs-~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL 298 (786)
T PF05483_consen 220 DYEKFEDLEEEYKKEVNDKEKQVS-LLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQEL 298 (786)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence 66665555554433221 111222 2223345677777777677777777888998777666666666667778888888
Q ss_pred HHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHH-
Q 000113 1827 QALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEA- 1905 (2159)
Q Consensus 1827 ~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~ea- 1905 (2159)
+..+.-++.-.++ .+.| ...|+.|-..|-.|..+...+-.|+.+.|.-.|-.+.--.+
T Consensus 299 ~~~K~slq~~~~t------------------q~~l---e~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtt 357 (786)
T PF05483_consen 299 EDIKQSLQESEST------------------QKAL---EEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTT 357 (786)
T ss_pred HHHHHHHHHHHHH------------------HHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777655443322 1333 33566677777777766666666666666554443321111
Q ss_pred ------------H------------HHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccccccCCCCCCcchhhH
Q 000113 1906 ------------Q------------ASQYQQKYKTLEAMIREMQTNLSNTTAAAAPAQDKIEKSSTRLRGSSSPFRCIAS 1961 (2159)
Q Consensus 1906 ------------q------------a~~y~~k~k~lEaM~~~~k~~~~~~~~~~~~~~~k~EK~s~rtRGS~SPFrCI~g 1961 (2159)
| ..+.+.|-.+||.|.......
T Consensus 358 i~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~k---------------------------------- 403 (786)
T PF05483_consen 358 ICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNK---------------------------------- 403 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhh----------------------------------
Confidence 1 112222222333333211000
Q ss_pred HHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhcchhHHHHhhhcccccccchhhhhh-hHHHHHHHH
Q 000113 1962 VVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAESMTHDVIRDLLGVKLDMTNYANLID-QEHVQKLVV 2040 (2159)
Q Consensus 1962 lvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eSMTHDVIRdLLGVKldmTnyA~liD-~~q~~kl~e 2040 (2159)
-.++++|-..++-.|| |+| ..++.++.|
T Consensus 404 ----------------e~eleeL~~~L~e~qk-----------------------------------ll~ekk~~eki~E 432 (786)
T PF05483_consen 404 ----------------EVELEELKKILAEKQK-----------------------------------LLDEKKQFEKIAE 432 (786)
T ss_pred ----------------HHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHH
Confidence 1234444444444443 233 346677777
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 000113 2041 AAQQQT----QELLAKEQIILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMD 2111 (2159)
Q Consensus 2041 ~a~~~~----~e~~~ke~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e 2111 (2159)
..+-.- .-.+.++.+|-.|.-|+.-..+..+.+.--+..-++|+-.-++.=..|-.+=..|..+|.-|.-|
T Consensus 433 ~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE 507 (786)
T PF05483_consen 433 ELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQE 507 (786)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665433 33456778888999999999999999888888888888776666666655555555555544433
No 122
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.71 E-value=38 Score=40.81 Aligned_cols=46 Identities=30% Similarity=0.414 Sum_probs=23.4
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHH
Q 000113 1706 DLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAM 1751 (2159)
Q Consensus 1706 ~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~ 1751 (2159)
+++-+..+.+...+-..+++++|..+-+++..|+.++..|++++..
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555555443
No 123
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.36 E-value=1.3e+02 Score=42.38 Aligned_cols=121 Identities=16% Similarity=0.257 Sum_probs=70.3
Q ss_pred HHHhhhhchhhHHHH-----hhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhh
Q 000113 1625 KLEASLTDTENALVI-----AKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTS 1699 (2159)
Q Consensus 1625 ~LE~~L~d~~~al~~-----~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~ 1699 (2159)
-|+|.-.++..+++. -++.++.+ ..=++.+..+.++...-.++..++++.-.=|+-|=..+-.....-....+.
T Consensus 643 Tl~GDqvskkG~lTgGy~D~krsrLe~~-k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~ 721 (1200)
T KOG0964|consen 643 TLSGDQVSKKGVLTGGYEDQKRSRLELL-KNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKRE 721 (1200)
T ss_pred EeccceecccCCccccchhhhhhHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 457777777777775 33444333 334456666666666655566666665555555555555554444445555
Q ss_pred hhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhH
Q 000113 1700 VESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLN 1746 (2159)
Q Consensus 1700 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~ 1746 (2159)
.+.|-.+++++......+-.++.-....|-.+-..++.++...-.++
T Consensus 722 ~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e 768 (1200)
T KOG0964|consen 722 HEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFE 768 (1200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 66666666666666666666666666666666666655555444443
No 124
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.34 E-value=55 Score=40.70 Aligned_cols=135 Identities=21% Similarity=0.262 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhHHHH
Q 000113 576 NEKTKRLECMLLGSLRREKMAEAVTQKLEAEIEHMNRLLCQREEDTQHTKMMLRFREEKIKQLELLVNGSVTAEKYLMDE 655 (2159)
Q Consensus 576 ~~k~k~lE~~L~~alrre~~~E~e~~kleeeie~ln~Ll~qkee~~q~sk~~lklree~i~~lE~l~s~~l~~E~~L~~E 655 (2159)
...+..+|.-+..|+---...+.++..|.=+++.|..-+...++.+-..+--. .+++..+|.+.. +-..|..+
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~---~eK~~elEr~K~----~~d~L~~e 155 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY---REKIRELERQKR----AHDSLREE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHH
Confidence 34577777766666544445667777788888888777777766655444322 356666665421 12346667
Q ss_pred HHHHHHHHHHHHHhhhhC----------------------hHHHHHHHHHHHHHHHH------HHHHHHhhhhHHHHHHH
Q 000113 656 NIALKEEIQLLQARIDRN----------------------PELTRFALENIRLLEQL------QLFQSFYEQGEREKLLA 707 (2159)
Q Consensus 656 n~~lk~Ei~~Lq~~~d~~----------------------~Ev~~~~~En~~L~eel------~~~~~f~~~gere~l~~ 707 (2159)
...|+++|......+.+| |-.+.+..|+..+.+-- -+++.|.+ ||+.|+.
T Consensus 156 ~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~--eke~L~~ 233 (302)
T PF09738_consen 156 LDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLAD--EKEELLE 233 (302)
T ss_pred HHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHH--HHHHHHH
Confidence 777777776554433322 33344456777665554 46777775 8999999
Q ss_pred HHHHHHHHHHHH
Q 000113 708 ELAELRDQLLDI 719 (2159)
Q Consensus 708 ei~~Lr~ql~~~ 719 (2159)
+|..|+.||...
T Consensus 234 qv~klk~qLee~ 245 (302)
T PF09738_consen 234 QVRKLKLQLEER 245 (302)
T ss_pred HHHHHHHHHHHH
Confidence 999999998553
No 125
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.30 E-value=29 Score=41.75 Aligned_cols=140 Identities=24% Similarity=0.275 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhh
Q 000113 1655 RVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKE 1734 (2159)
Q Consensus 1655 r~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~E 1734 (2159)
+..|+.+-+.+..+-.-+.+...-.+.|+.++..+.+- ...+..-++..++.|+.++++
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~e---------------------i~~~r~r~~~~e~kl~~v~~~ 88 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESE---------------------IQEIRERIKRAEEKLSAVKDE 88 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhccccH
Confidence 33344444444555555555566666777777766666 778888888888888888877
Q ss_pred h--hhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhH
Q 000113 1735 R--DKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEV 1812 (2159)
Q Consensus 1735 r--d~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~ 1812 (2159)
| ..|.-|+-+++++..-+..- ..+..-.-+...-+.+...+.+.-+|+.+.+++.++ |..|-.+.++.
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~e-------l~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~---e~e~~~i~e~~ 158 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDE-------LAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL---EEEVAEIREEG 158 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 6 45777777777665443221 123333334444556666677777777777777654 55888889988
Q ss_pred HhhhhhHhhHHHH
Q 000113 1813 ERHHLIRDSLELE 1825 (2159)
Q Consensus 1813 ~r~r~~r~~le~e 1825 (2159)
..+.-.|+.|..+
T Consensus 159 ~~~~~~~~~L~~~ 171 (239)
T COG1579 159 QELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877554
No 126
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=86.28 E-value=1.4e+02 Score=40.48 Aligned_cols=153 Identities=19% Similarity=0.230 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhh----hhHHHHHHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQ----KEEEVKILEH 1789 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~----keeevk~le~ 1789 (2159)
+.++...+.+=+.-+..|..=+..|..|=..=.+...+.-.+--|+..+|.++.-.|=..|.+-++ |.-|.+++ +
T Consensus 456 e~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~-k 534 (786)
T PF05483_consen 456 EIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKML-K 534 (786)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-H
Confidence 567777777777777777777777777766666666788889999999999999877666655443 33444544 5
Q ss_pred hHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHH
Q 000113 1790 SIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQ 1869 (2159)
Q Consensus 1790 sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~ 1869 (2159)
-|+.||.|=+.|=|.+.-+++|+.+.+- +++.-|-+ ++ .-.|+. .-+..
T Consensus 535 qie~Lee~~~~Lrneles~~eel~~k~~---Ev~~kl~k----------------sE---------en~r~~---e~e~~ 583 (786)
T PF05483_consen 535 QIENLEETNTQLRNELESVKEELKQKGE---EVKCKLDK----------------SE---------ENARSI---ECEIL 583 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhh----------------HH---------HhhHHH---HHHHh
Confidence 6888999999998888888888776653 22221111 00 111222 34445
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 000113 1870 EAHHRIQLLEREKEEQNEEIKRCKDYLSE 1898 (2159)
Q Consensus 1870 ~a~~~i~~l~~~~~~k~~ei~q~k~~ise 1898 (2159)
....+|.+|++.+....+.|.....+|.+
T Consensus 584 ~k~kq~k~lenk~~~LrKqvEnk~K~iee 612 (786)
T PF05483_consen 584 KKEKQMKILENKCNNLRKQVENKNKNIEE 612 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 55666666766666666666666666666
No 127
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.21 E-value=1.2e+02 Score=39.41 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000113 1600 STLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVI 1679 (2159)
Q Consensus 1600 ~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vi 1679 (2159)
.-+.+.+.|++.+...+...=...++||.+|.+.+..+......+....+.+.+++..|.++...+..++.+-.+++.+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888887777778888888888888888888888888886666554
Q ss_pred HHHHHHHhhh
Q 000113 1680 TGLEKEILHR 1689 (2159)
Q Consensus 1680 e~LE~eil~l 1689 (2159)
..+=.-+-.+
T Consensus 118 a~~L~A~~r~ 127 (420)
T COG4942 118 AEQLAALQRS 127 (420)
T ss_pred HHHHHHHHhc
Confidence 4443333333
No 128
>PLN02939 transferase, transferring glycosyl groups
Probab=86.04 E-value=89 Score=44.19 Aligned_cols=64 Identities=28% Similarity=0.290 Sum_probs=44.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHH
Q 000113 1646 TLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVE 1725 (2159)
Q Consensus 1646 ~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 1725 (2159)
...+.+.-...+++|+. ..|..-|+-|+.||-. - ...+
T Consensus 118 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-------~-------------~~~~-------- 155 (977)
T PLN02939 118 NSKDGEQLSDFQLEDLV--------------GMIQNAEKNILLLNQA-------R-------------LQAL-------- 155 (977)
T ss_pred ccccccccccccHHHHH--------------HHHHHHHhhhHhHHHH-------H-------------HHHH--------
Confidence 34445555555566655 4566678899988877 1 2222
Q ss_pred HHHHHHhhhhhhhHHHHHhhHHHHHH
Q 000113 1726 EELRKVSKERDKLWVEICSLNDKLAM 1751 (2159)
Q Consensus 1726 ~~l~~~~~Erd~l~~e~~~l~~kle~ 1751 (2159)
++|.++..|++-||.+|.+|.-+|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 156 EDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 78999999999999999998766543
No 129
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.96 E-value=1.8e+02 Score=41.21 Aligned_cols=480 Identities=22% Similarity=0.301 Sum_probs=250.6
Q ss_pred cccccchhhhHHHHhhHHHHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhh
Q 000113 1551 SHLSYENLSLKKELQRKEVLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASL 1630 (2159)
Q Consensus 1551 ~~l~~en~~l~~El~RK~~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L 1630 (2159)
..|..-=.++..+.-|.+. ++.+.+++-- +-+.+.+++...++..+.-|..|...+++......+|-...
T Consensus 297 ~~L~~~~~~~~~~~tr~~t-------~l~~~~~tl~---~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~ 366 (1174)
T KOG0933|consen 297 KALEDKLDSLQNEITREET-------SLNLKKETLN---GEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAF 366 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHH-------HHHHHHHHHh---hhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3344434466666666654 4556666554 56778889999999999999999999999999999888888
Q ss_pred hchhhHHHHhhhhhhHHh----hhhH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhh
Q 000113 1631 TDTENALVIAKGTIDTLS----DQNA---DLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESI 1703 (2159)
Q Consensus 1631 ~d~~~al~~~~~~~~~ls----~eN~---eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~ 1703 (2159)
++-..++..++..++.|+ ..++ -|-.+|-++=...+.+..+++--+.=++++.+||.+..+.-+....--..-
T Consensus 367 ~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~ 446 (1174)
T KOG0933|consen 367 QEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKD 446 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHH
Confidence 888888888666665543 3332 244555555555556666666666667778888777665511111111111
Q ss_pred hhhhhhccchhhHHHHHHHHHHHH---HHHHhhhhhhhHHHHHhhHHHHHHHHH--------------------------
Q 000113 1704 AEDLRIVTSDRDKLCEEVESVEEE---LRKVSKERDKLWVEICSLNDKLAMAYA-------------------------- 1754 (2159)
Q Consensus 1704 ~~~~~~~~~~~~~~~~~v~~l~~~---l~~~~~Erd~l~~e~~~l~~kle~a~a-------------------------- 1754 (2159)
-+.++.+-.+-..+.-.++++..+ ...+...|++|+.-+..|+++++.-.|
T Consensus 447 ~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va 526 (1174)
T KOG0933|consen 447 IEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVA 526 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHH
Confidence 122333333333333333333222 224556677777777777777765443
Q ss_pred ----hhhhhHHHHHHHHHHHHhhhhhhhhhhHHH---HHHHH--------------------hHHHHHhHHHHHHhHhhh
Q 000113 1755 ----LADENEAIAVEARQELEASKLYAEQKEEEV---KILEH--------------------SIEELEHTVNALEKKVYE 1807 (2159)
Q Consensus 1755 ----~a~e~eaia~ea~q~ae~~k~yae~keeev---k~le~--------------------sveele~tin~LE~kV~~ 1807 (2159)
+-|.+.+-| -+++--.+.|-===+-|+ ++|+| |-+-|..+-| |+.
T Consensus 527 ~Li~vkd~~~~tA---le~~aGgrLynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~-----v~~ 598 (1174)
T KOG0933|consen 527 KLIKVKDRSYATA---LETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQSFVLSPNVLQAAKN-----VGN 598 (1174)
T ss_pred HHheeCcchHHHH---HHHHhcCcceeEEeechHHHHHHhhcccccceeEEEechhhhhccCCHhHHHHHHH-----hcC
Confidence 234555333 333444444432222222 34542 1122222221 221
Q ss_pred hhhhHHhhhhhH-------------------hhHHHHHH-----HHHHhhhhccccccccccccccCCCchhhhhhhHHH
Q 000113 1808 MNGEVERHHLIR-------------------DSLELEIQ-----ALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQD 1863 (2159)
Q Consensus 1808 ~k~e~~r~r~~r-------------------~~le~e~~-----~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~ 1863 (2159)
=+.+.- --|++ ++++.--+ .+|-++-+++ ++..++.+.-.|+....--..| .
T Consensus 599 ~~v~~a-l~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~--GDV~dP~GtlTGGs~~~~a~~L-~ 674 (1174)
T KOG0933|consen 599 DNVELA-LSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLE--GDVYDPSGTLTGGSRSKGADLL-R 674 (1174)
T ss_pred chHHHH-HHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhcccccccceeeec--CceeCCCCcccCCCCCCcccHH-H
Confidence 111110 00111 11111100 1222333333 2333333333333333333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccc
Q 000113 1864 RLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQTNLSNTTAAAAPAQDKIE 1943 (2159)
Q Consensus 1864 ~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~~~~~~~~~~~~~~k~E 1943 (2159)
.+-.|.+|+.+|+.-+++++.-+.+|+-+ |+|+.-|..=+..|+---++.--
T Consensus 675 ~l~~l~~~~~~~~~~q~el~~le~eL~~l-----------e~~~~kf~~l~~ql~l~~~~l~l----------------- 726 (1174)
T KOG0933|consen 675 QLQKLKQAQKELRAIQKELEALERELKSL-----------EAQSQKFRDLKQQLELKLHELAL----------------- 726 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 36678889999999999888888888765 45665555555544433332211
Q ss_pred ccccccCCCCCCcchhhHHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhcchhHHHHhhhcccccc
Q 000113 1944 KSSTRLRGSSSPFRCIASVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAESMTHDVIRDLLGVKLDM 2023 (2159)
Q Consensus 1944 K~s~rtRGS~SPFrCI~glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eSMTHDVIRdLLGVKldm 2023 (2159)
..+|---+||.=++.=+++|. +++--.+.+|.+.+...-.-|-+|-+|-.. |
T Consensus 727 ---~~~r~~~~e~~~~~~~~~~~~----e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~---------------------~ 778 (1174)
T KOG0933|consen 727 ---LEKRLEQNEFHKLLDDLKELL----EEVEESEQQIKEKERALKKCEDKISTLEKK---------------------M 778 (1174)
T ss_pred ---HHHHHhcChHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------H
Confidence 123344567776666666654 345567778888777776666666665443 3
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHH--
Q 000113 2024 TNYANLIDQEHVQKLVVAAQQQTQELLAKEQIILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQLL-- 2101 (2159)
Q Consensus 2024 TnyA~liD~~q~~kl~e~a~~~~~e~~~ke~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL-- 2101 (2159)
++|-+ .++-++-.|.+-|+.+...=+---.++..+..+.-..|+..|+|.+=-+.+
T Consensus 779 ~d~~~----------------------~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~ 836 (1174)
T KOG0933|consen 779 KDAKA----------------------NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQ 836 (1174)
T ss_pred hHhhh----------------------hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 233344444444444444444444445555555555555555554433322
Q ss_pred -----HHhhhhhhcchhhhhhHhhhhHHHHHHHh
Q 000113 2102 -----SAQNDMLKMDKTNLLKRISELDDMVKMLI 2130 (2159)
Q Consensus 2102 -----~aqnemLk~e~~n~~~ki~eLd~~vk~L~ 2130 (2159)
..+.+-|+-|..++.-+|...+..|+++.
T Consensus 837 ~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~ 870 (1174)
T KOG0933|consen 837 QLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQ 870 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 33444555555555555555555555443
No 130
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=85.88 E-value=0.38 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.1
Q ss_pred CCceeEeecccCCCcceeecc
Q 000113 235 YNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYTM~G 255 (2159)
.+..+...|+||||||++|.+
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCcChhhhh
Confidence 466778888999999999986
No 131
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.77 E-value=1.3e+02 Score=39.63 Aligned_cols=257 Identities=25% Similarity=0.254 Sum_probs=122.3
Q ss_pred cccccchhhhHHHHhhHHHHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhh
Q 000113 1551 SHLSYENLSLKKELQRKEVLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASL 1630 (2159)
Q Consensus 1551 ~~l~~en~~l~~El~RK~~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L 1630 (2159)
..+..++.-|+.+|.+-+..++-|-..+.=+|..-+..=...++..+|. ..++ ..|..|...++..+....
T Consensus 105 ~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~--~~~~-~sL~ekl~lld~al~~~~------ 175 (511)
T PF09787_consen 105 DSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQ--NGAP-RSLQEKLSLLDEALKRED------ 175 (511)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHH--HHHH-hhHHHHHHHHHHHHHhcC------
Confidence 4566677788778877777777777666655433333323333333331 1111 555566666665554322
Q ss_pred hchhhHHHHhhhh----------hhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhh
Q 000113 1631 TDTENALVIAKGT----------IDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSV 1700 (2159)
Q Consensus 1631 ~d~~~al~~~~~~----------~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~ 1700 (2159)
++++.+...- ...|......++.+++ ......+....++=-+-..+..+.|+..-..--.+.|.+-
T Consensus 176 ---~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~-~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~k 251 (511)
T PF09787_consen 176 ---GNAITAVVEFLKRTLKKEIERQELEERPKALRHYIE-YLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSK 251 (511)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCH
Confidence 2222221111 1122222222222222 2333334444444444445555555555442111222333
Q ss_pred hhhhhhhhh--ccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHH-----hh
Q 000113 1701 ESIAEDLRI--VTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELE-----AS 1773 (2159)
Q Consensus 1701 ~~~~~~~~~--~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae-----~~ 1773 (2159)
|...+.|+- ..+..+ +...+ -+|..+..|||.+++|+-.|+.+++...+-+.+.|+-+....+..+ .+
T Consensus 252 EklI~~LK~~~~~~~~~---~~~~~--~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~ 326 (511)
T PF09787_consen 252 EKLIESLKEGCLEEGFD---SSTNS--IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELS 326 (511)
T ss_pred HHHHHHHHhcccccccc---cccch--hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 222222222 110011 00000 3478899999999999999999998777777777765554333222 11
Q ss_pred hhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhh----hhHhhHHHHHHHHHHhhhhcc
Q 000113 1774 KLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHH----LIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1774 k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r----~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
.++.... .- |.-...+-...|-+++|..+++ +.-..-+.|+|.+|.+|.+..
T Consensus 327 ~~~~~~~----~~--------e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 327 QQLEPEL----TT--------EAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred HHHHHHh----ch--------HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 00 2222233333444444444432 222234788999998888755
No 132
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.47 E-value=53 Score=42.34 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=23.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhh
Q 000113 1589 KDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASL 1630 (2159)
Q Consensus 1589 kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L 1630 (2159)
|+++-++..|...+.+.+.+|....-.++|+-..-..|+.+-
T Consensus 69 k~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 69 KSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555666555555555544
No 133
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=85.33 E-value=0.58 Score=56.84 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=30.5
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhc-CCCceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLS-GYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLe-GyN~TIFAYGQTGSGKTYTM 253 (2159)
|.-|++.+.-...+.-++.+.. .+..++. |...+++-||++|+|||+++
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3334444444445555554443 3344444 45678999999999999986
No 134
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.32 E-value=0.49 Score=55.11 Aligned_cols=48 Identities=10% Similarity=0.229 Sum_probs=31.5
Q ss_pred ceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 202 TRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 202 ~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
..|+||..+.. .+..++..+.. ++. ......++=||++|+||||-+.+
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~-~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQN-ALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHH-HHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 35889866654 55556654432 211 22235799999999999999865
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=85.11 E-value=0.53 Score=59.79 Aligned_cols=50 Identities=26% Similarity=0.466 Sum_probs=33.7
Q ss_pred ceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 202 TRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 202 ~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
..|+||..+.. .++...|..+. .++.+ -..||. +|=||++|+||||-+.+
T Consensus 100 ~~~tFdnFv~g-~~n~~a~~~~~-~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 100 PDYTFENFVVG-PGNSFAYHAAL-EVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCcccccccC-CchHHHHHHHH-HHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 46999976643 35556665433 33332 123675 99999999999999865
No 136
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.10 E-value=0.62 Score=57.25 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=30.5
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhh-cCCCceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCL-SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vL-eGyN~TIFAYGQTGSGKTYTM 253 (2159)
|..+++.+.-..-++-++.+...+ ..++ .+...+++-||++|+|||+++
T Consensus 23 l~~~~~P~~l~~Re~e~~~l~~~l-~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 23 LEPDYVPENLPHREEQIEELAFAL-RPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHH-HHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 444444444445555555554333 3344 445667899999999999987
No 137
>PRK09087 hypothetical protein; Validated
Probab=84.83 E-value=0.62 Score=54.23 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=32.1
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.|+||..+...++ ..+|..+ .....-.|..++=||++||||||-+..
T Consensus 17 ~~~~~~Fi~~~~N-~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 17 AYGRDDLLVTESN-RAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCChhceeecCch-HHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHHHH
Confidence 5899987765444 4477643 332222355699999999999999854
No 138
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.03 E-value=0.44 Score=61.08 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=26.5
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
..+..++..=+|-|+.-|+||||||.||+.
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 456777888899999999999999999976
No 139
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.63 E-value=1.8e+02 Score=39.40 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=51.5
Q ss_pred HHHHhHHHHHhHHHHHHhHhh-hhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHH
Q 000113 1786 ILEHSIEELEHTVNALEKKVY-EMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDR 1864 (2159)
Q Consensus 1786 ~le~sveele~tin~LE~kV~-~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~ 1864 (2159)
++..|..++....+.++ .|. ..+..+...+-....++.|+..+.+++..+++-.. -..+...+.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~------------i~~l~e~l~~l 433 (650)
T TIGR03185 367 PHRLSGSELTQLEVLIQ-QVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQ------------IAQLLEELGEA 433 (650)
T ss_pred cccCCHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH------------HHHHHHHHHHH
Confidence 45666666653333333 333 45556666666667888888888888877763221 12333333333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 000113 1865 LLQLQEAHHRIQLLEREKEEQNEEIKRCKDYL 1896 (2159)
Q Consensus 1865 ~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~i 1896 (2159)
...+.++...+..++.++....++|.+++..|
T Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 434 QNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 140
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=83.51 E-value=1.8e+02 Score=39.27 Aligned_cols=309 Identities=23% Similarity=0.280 Sum_probs=152.8
Q ss_pred chhhhhhhccccchhh---hHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHH-----hhhhhhHHhh
Q 000113 1578 FSLLQESASNKKDIKD---ETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVI-----AKGTIDTLSD 1649 (2159)
Q Consensus 1578 ~sLLQESaSn~kD~kD---e~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~-----~~~~~~~ls~ 1649 (2159)
+.||+.++.+-+++.+ |.+++...++.+..||+..-.+ =+.-+.|+..+.+.+.-+-+ +-..-..+-.
T Consensus 103 ~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~q----q~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q 178 (629)
T KOG0963|consen 103 VPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQ----QVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQ 178 (629)
T ss_pred chHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777666666 6777777777777776543221 12234455555555544444 1123333344
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhh-hhhhhhhccchhhHHHHHHHHHHHHH
Q 000113 1650 QNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVES-IAEDLRIVTSDRDKLCEEVESVEEEL 1728 (2159)
Q Consensus 1650 eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~l 1728 (2159)
++++--+.|.+ ....+.+++.+..+=|..|..-|.--... + +-.++ .-+++-+..+..+=+|.-++.-+.-+
T Consensus 179 ~~~e~e~~L~~---~~~~~~~q~~~le~ki~~lq~a~~~t~~e---l-~~~~s~~dee~~~k~aev~lim~eLe~aq~ri 251 (629)
T KOG0963|consen 179 EWAEREAGLKD---EEQNLQEQLEELEKKISSLQSAIEDTQNE---L-FDLKSKYDEEVAAKAAEVSLIMTELEDAQQRI 251 (629)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhH---H-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333 33333344444333344443333221111 0 00000 01222333333444555555555555
Q ss_pred HHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHH-HHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHH--------H---h
Q 000113 1729 RKVSKERDKLWVEICSLNDKLAMAYALADENEAI-AVEARQELEASKLYAEQKEEEVKILEHSIEEL--------E---H 1796 (2159)
Q Consensus 1729 ~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eai-a~ea~q~ae~~k~yae~keeevk~le~sveel--------e---~ 1796 (2159)
-.+-.|-.+|..+.-.-|.....+ -++.-.|. -+.-+ ||-|+..|=.+|+-+ | .
T Consensus 252 ~~lE~e~e~L~~ql~~~N~~~~~~--~~~~i~~~~~~L~~------------kd~~i~~L~~di~~~~~S~~~e~e~~~~ 317 (629)
T KOG0963|consen 252 VFLEREVEQLREQLAKANSSKKLA--KIDDIDALGSVLNQ------------KDSEIAQLSNDIERLEASLVEEREKHKA 317 (629)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhc--cCCchHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444445555544444444433 12333222 12333 444444443333322 2 4
Q ss_pred HHHHHHhHhhhhhhhHHhhhhh------HhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHH
Q 000113 1797 TVNALEKKVYEMNGEVERHHLI------RDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQE 1870 (2159)
Q Consensus 1797 tin~LE~kV~~~k~e~~r~r~~------r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~ 1870 (2159)
+|+.||+++...+++.+--+-. =+++..||-.|| .|.--.|....+-+ .+-..+.+.|-++.+.|+
T Consensus 318 qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk-~ief~~se~a~~~~------~~~~~leslLl~knr~lq- 389 (629)
T KOG0963|consen 318 QISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK-AIEFGDSEEANDED------ETAKTLESLLLEKNRKLQ- 389 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH-HhhcCCcccccccc------cccchHHHHHHHHHhhhh-
Confidence 7888888887776666532211 124556666666 33222222111111 122456677766665554
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 000113 1871 AHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQ 1925 (2159)
Q Consensus 1871 a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k 1925 (2159)
+....|+.-.+.+..+|.+.+.-++| .++++..-++=-..||-=..++.
T Consensus 390 --~e~a~Lr~~n~~~~~~~~~~~~~~~e----l~~~~~~~ke~i~klE~dl~~~~ 438 (629)
T KOG0963|consen 390 --NENASLRVANSGLSGRITELSKKGEE----LEAKATEQKELIAKLEQDLLKVQ 438 (629)
T ss_pred --HHHHHHhccccccchhHHHHHhhhhh----hHHHHHHHHHHHHHHHhhHhhcc
Confidence 34455666666777788888888775 46778777777677777777666
No 141
>PRK12377 putative replication protein; Provisional
Probab=83.41 E-value=0.67 Score=55.02 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=36.7
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.+||........|..++.. +..++..+..|. ..++=||++|+||||.+.+
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 4677665555567777764 456777776654 4688899999999999866
No 142
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.29 E-value=2.7e+02 Score=41.16 Aligned_cols=316 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHh
Q 000113 1726 EELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKV 1805 (2159)
Q Consensus 1726 ~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV 1805 (2159)
..|.+-...=|+++..+-.+..+.+.+..+...-...+. .-+..+-.++-+-.-.++++...+..++.++
T Consensus 223 ~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1353)
T TIGR02680 223 TDVADALEQLDEYRDELERLEALERALRNFLQRYRRYAR----------TMLRRRATRLRSAQTQYDQLSRDLGRARDEL 292 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000113 1806 YEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQ 1885 (2159)
Q Consensus 1806 ~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k 1885 (2159)
....++.++..-.++.++.+++.++.++..+. +++.-+..+.+.+-...+.++...+...+..+..+
T Consensus 293 ~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~-------------~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a 359 (1353)
T TIGR02680 293 ETAREEERELDARTEALEREADALRTRLEALQ-------------GSPAYQDAEELERARADAEALQAAAADARQAIREA 359 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccccccCCCCCCc-------ch
Q 000113 1886 NEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQTNLSNTTAAAAPAQDKIEKSSTRLRGSSSPF-------RC 1958 (2159)
Q Consensus 1886 ~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~~~~~~~~~~~~~~k~EK~s~rtRGS~SPF-------rC 1958 (2159)
..-..+....+.+..=+.+.-...+++---+|..-+.+.-+. +|... +-.-.+..+.-.+| +|
T Consensus 360 ~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~r~~ 429 (1353)
T TIGR02680 360 ESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGLS-PAHTA---------EPDAALAAQELQELGALDARRQD 429 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccc---------cccccccccccccchhhHHHHHH
Q ss_pred hhHHHHH-------------hhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhcchh---------------
Q 000113 1959 IASVVQQ-------------MNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAESMTH--------------- 2010 (2159)
Q Consensus 1959 I~glvQQ-------------mn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eSMTH--------------- 2010 (2159)
+...++. -.-.-++.+.+++.+..+++....-...---+-.++...++++-.
T Consensus 430 l~~~~~~~~~~i~~L~~~~~~~e~a~~~~~~~~~~~~el~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1353)
T TIGR02680 430 ADRVIAQRSEQVALLRRRDDVADRAEATHAAARARRDELDEEAEQAAARAELADEAVHREGARLAWVDAWQAQLRELTIL 509 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhccchhh
Q ss_pred ---HHHHhhhcccccccchhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 000113 2011 ---DVIRDLLGVKLDMTNYANLI--DQEHVQKLVVAAQQQTQELLAKEQIILNLRKRIEDLIEEHESCTSILK 2078 (2159)
Q Consensus 2011 ---DVIRdLLGVKldmTnyA~li--D~~q~~kl~e~a~~~~~e~~~ke~e~~~Lk~q~~~lieEr~s~~~ei~ 2078 (2159)
|++-.+ -+-+.|+... +..=..-+.........+....+.++....+++.+.+++.+.|++.++
T Consensus 510 ~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~e~~~el~~e~~~~e 578 (1353)
T TIGR02680 510 AVDDQPGAL----ADLDSWDALLQGEAPVRVAVYSAVQPLADELTRERAALRLAEEVLEEERDALRTERERLE 578 (1353)
T ss_pred hhcchhhhh----hhhcchhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 143
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=82.44 E-value=57 Score=39.26 Aligned_cols=100 Identities=29% Similarity=0.293 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHH
Q 000113 1716 KLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELE 1795 (2159)
Q Consensus 1716 ~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele 1795 (2159)
.|+.-+..++++....-.+=-.-+.-+..|.+|+..|..-|.+-+.-+.+|.+.-..-+.=+..-.+|=-.|+.-+.+++
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~ 88 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE 88 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666667777888888888888888888777777666666555555555555666666666
Q ss_pred hHHHHHHhHhhhhhhhHHhh
Q 000113 1796 HTVNALEKKVYEMNGEVERH 1815 (2159)
Q Consensus 1796 ~tin~LE~kV~~~k~e~~r~ 1815 (2159)
.-|.-|+..+..-..|+++-
T Consensus 89 ~~i~~l~ee~~~ke~Ea~~l 108 (246)
T PF00769_consen 89 AEIARLEEESERKEEEAEEL 108 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666555555555543
No 144
>PRK08727 hypothetical protein; Validated
Probab=82.29 E-value=0.7 Score=53.79 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=27.9
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCC-ceeEeecccCCCcceeecc
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYN-SCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN-~TIFAYGQTGSGKTYTM~G 255 (2159)
.|+||..+.... + .+.. +..+..|+. -.|+-||++||||||-+.+
T Consensus 15 ~~~f~~f~~~~~-n--~~~~-----~~~~~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 15 DQRFDSYIAAPD-G--LLAQ-----LQALAAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred cCChhhccCCcH-H--HHHH-----HHHHHhccCCCeEEEECCCCCCHHHHHHH
Confidence 478887664443 2 2221 122222443 3599999999999998855
No 145
>PRK08181 transposase; Validated
Probab=82.18 E-value=1 Score=54.16 Aligned_cols=47 Identities=26% Similarity=0.463 Sum_probs=30.2
Q ss_pred EeceecCCCCChHHHHHhhch-hHHHHhhcCCCceeEeecccCCCcceeeccc
Q 000113 205 TFDHIACEMISQEKLFRVAGL-PMVENCLSGYNSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 205 tFD~VFde~aSQEeVFe~v~~-PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~ 256 (2159)
.||.-+.+..+...+..-... ..++ .|.| |+-||++|+||||-..+-
T Consensus 79 ~fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 79 SFDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred hCCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHHH
Confidence 355556666666655543222 2332 4554 899999999999988763
No 146
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=82.16 E-value=0.79 Score=58.97 Aligned_cols=48 Identities=29% Similarity=0.292 Sum_probs=33.2
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.|....-|.|.-+|-.- ...+|+++-.|.-. ----|.|||||||||--
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~-QtLLGvTGSGKTfT~An 51 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKH-QTLLGVTGSGKTFTMAN 51 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCcee-eEEeeeccCCchhHHHH
Confidence 47777778888888543 34556665555433 33469999999999965
No 147
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=82.10 E-value=0.77 Score=57.29 Aligned_cols=51 Identities=33% Similarity=0.480 Sum_probs=31.0
Q ss_pred ceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 202 TRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 202 ~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
..|+||.... +.++...|..+ ..+...--..|| .+|=||++|+||||.+..
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCccccccc-CCcHHHHHHHH-HHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 3589997443 23455555433 233333111244 478899999999999854
No 148
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.67 E-value=1.5e+02 Score=37.00 Aligned_cols=130 Identities=24% Similarity=0.362 Sum_probs=74.7
Q ss_pred hccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 000113 1709 IVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILE 1788 (2159)
Q Consensus 1709 ~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le 1788 (2159)
.+..|...|....+-+..-+.++...++.|..|+-.|+....- ++...=.--..+|+.-.+.++--+.+..++.-|+
T Consensus 160 ~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e---~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~ 236 (325)
T PF08317_consen 160 LLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE---IESCDQEELEALRQELAEQKEEIEAKKKELAELQ 236 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666667777777777777777777777777665432 1111111122455555555555666666666777
Q ss_pred HhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHh----hHHHHHHHHHHhhhhcccccc
Q 000113 1789 HSIEELEHTVNALEKKVYEMNGEVERHHLIRD----SLELEIQALRRRLSTVQNFSD 1841 (2159)
Q Consensus 1789 ~sveele~tin~LE~kV~~~k~e~~r~r~~r~----~le~e~~~~~~~~~~v~n~~~ 1841 (2159)
.-+++|+..|..++++...+..|+....-.++ -=..|+-.|+.++...+++++
T Consensus 237 ~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 237 EELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHC
Confidence 77777777777777766666666544333332 112445555555555555444
No 149
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.59 E-value=2e+02 Score=38.52 Aligned_cols=247 Identities=22% Similarity=0.255 Sum_probs=143.1
Q ss_pred hhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHH
Q 000113 1641 KGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEE 1720 (2159)
Q Consensus 1641 ~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1720 (2159)
++..+.|-+-=+.+++.+..+.-++..++..|+..++=|+.-|.||=.+..--..| .-+.+-=+|-+.|..+|+..
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~L----k~~Ie~Q~iS~~dve~mn~E 340 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDEL----KKQIELQGISGEDVERMNLE 340 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCHHHHHHHHHH
Confidence 34444444444556777777777777777777777776766666665544331111 12223336778899999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHH-HHH----
Q 000113 1721 VESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIE-ELE---- 1795 (2159)
Q Consensus 1721 v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sve-ele---- 1795 (2159)
-+.+..+|+++..++|.|..++-.++.+ |++.+++-|--++.-.+.+---++- |+++|+. ++.
T Consensus 341 r~~l~r~l~~i~~~~d~l~k~vw~~~l~---~~~~f~~le~~~~~~~~l~~~i~l~---------~~~~~~n~~~~pe~~ 408 (581)
T KOG0995|consen 341 RNKLKRELNKIQSELDRLSKEVWELKLE---IEDFFKELEKKFIDLNSLIRRIKLG---------IAENSKNLERNPERA 408 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhccCCcCCccC
Confidence 9999999999999999999999988765 4556666666555433322111111 4444444 111
Q ss_pred --------hHH-HHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHH
Q 000113 1796 --------HTV-NALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLL 1866 (2159)
Q Consensus 1796 --------~ti-n~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 1866 (2159)
+-| -.|..-++.+.++. +.. +.++-.|-+...++... .....+.+.....
T Consensus 409 ~~~~~d~k~~V~~~l~el~~ei~~~~-----~~~--~~~~~tLq~~~~~~~~~--------------i~E~~~~l~~~~~ 467 (581)
T KOG0995|consen 409 ATNGVDLKSYVKPLLKELLDEISEEL-----HEA--ENELETLQEHFSNKAST--------------IEEKIQILGEIEL 467 (581)
T ss_pred ccccccchhHhHHHHHHHHHHHHHHH-----HHH--HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 111 11222222222221 111 12222344444444322 3345566666677
Q ss_pred HHHHHHHHHHHHHHHh----hhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 000113 1867 QLQEAHHRIQLLEREK----EEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREM 1924 (2159)
Q Consensus 1867 ~l~~a~~~i~~l~~~~----~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~ 1924 (2159)
+|..|-..-+...++. ...+.||.++-+|+--++|-..-+-++--+.-|+.|-=..++
T Consensus 468 el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~ 529 (581)
T KOG0995|consen 468 ELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRM 529 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766655554443 345778888888888777777777666666666555444443
No 150
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.24 E-value=2e+02 Score=38.09 Aligned_cols=296 Identities=20% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHH
Q 000113 1591 IKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEE 1670 (2159)
Q Consensus 1591 ~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~ 1670 (2159)
+|-..+....++.++-.|- ||..+.-.|+.||.++-....-+.--..+..----.-..+|..+++..+.
T Consensus 213 lk~~~~s~~e~l~kl~~Eq-----Qlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~------ 281 (613)
T KOG0992|consen 213 LKIVEESRLESLGKLNSEQ-----QLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAE------ 281 (613)
T ss_pred HHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHH
Q 000113 1671 HLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLA 1750 (2159)
Q Consensus 1671 ~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle 1750 (2159)
++.|+++-++.+++=|-.++-. ...|+ .+++...-+|--..=|-.|.+.|-
T Consensus 282 e~~e~rk~v~k~~~l~q~~~~~----------------------------~~eL~-K~kde~~~n~~~~~lie~lq~el~ 332 (613)
T KOG0992|consen 282 ETTEKRKAVKKRDDLIQSRKQV----------------------------SFELE-KAKDEIKQNDDKVKLIEELQDELS 332 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHH-HHHHHHhccchHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHh----hHHHHH
Q 000113 1751 MAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRD----SLELEI 1826 (2159)
Q Consensus 1751 ~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~----~le~e~ 1826 (2159)
-|.+.|.|---|-.+--+..--.+--+-+|.+|--+|-.---+-=.---.=|-++..+++++.-.+=.-. +|+-||
T Consensus 333 ~al~~c~eeN~~~t~~n~e~~~lq~~etek~ee~tlla~~~dr~se~~e~teqkleelk~~f~a~q~K~a~tikeL~~El 412 (613)
T KOG0992|consen 333 VALKECREENKIETQVNFERNKLQNEETEKKEEKTLLAAADDRFSEYSELTEQKLEELKVQFTAKQEKHAETIKELEIEL 412 (613)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHH-----------------------------HHHHHHH
Q 000113 1827 QALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQE-----------------------------AHHRIQL 1877 (2159)
Q Consensus 1827 ~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~-----------------------------a~~~i~~ 1877 (2159)
+.-|.-+..+. +.+..++-+.| +|.++.+.-..+.++ --.+|-.
T Consensus 413 ~~yrr~i~~~~--s~ia~~~~e~p-----qq~s~sRSsSs~s~~tr~s~e~r~ss~agssa~~v~~~qqDka~lierivr 485 (613)
T KOG0992|consen 413 EEYRRAILRNA--SEIAQYEDELP-----QQLSLSRSSSSGSQETRNSQEVRDSSEAGSSAQQVSSPQQDKADLIERIVR 485 (613)
T ss_pred HHHHHhccccc--cccCCCCccch-----hhhhhcccccccchhhchhhhhcchhhhhhhhhhcCchhhhhHHHHHHHHH
Q ss_pred HHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccccccCCCCCC
Q 000113 1878 LEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQTNLSNTTAAAAPAQDKIEKSSTRLRGSSSP 1955 (2159)
Q Consensus 1878 l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~~~~~~~~~~~~~~k~EK~s~rtRGS~SP 1955 (2159)
|.+.+|+|.+-|.=+..|+.-|+ -+-|-|-|-.-+-+- .+.||.++ +-++|.+.||
T Consensus 486 LQ~a~arknekiefLe~h~~qlv-------eevQKktKiiQhy~l---rEes~~lt------------tegsd~nks~ 541 (613)
T KOG0992|consen 486 LQLAIARKNEKIEFLEQHLIQLV-------EEVQKKTKIIQHYTL---REESGPLT------------TEGSDINKSS 541 (613)
T ss_pred HHHHHHHhhhHhHHHHHHHHHHH-------HHHHHHHHHHHHHHH---HhhcCCCC------------CCccccccch
No 151
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.04 E-value=81 Score=35.21 Aligned_cols=90 Identities=28% Similarity=0.358 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEE 1793 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~svee 1793 (2159)
..++...+..+++.+.....-.. ..-.|+.|+.+-.--+++.+....++..-..-...-|++-+-=|+-||.....
T Consensus 51 ld~~~~~l~~~k~~lee~~~~~~----~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~ 126 (143)
T PF12718_consen 51 LDKLEEQLKEAKEKLEESEKRKS----NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQ 126 (143)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH----hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHH
Confidence 44444444444444444322222 22266666666666666666666666666665566666666666666666666
Q ss_pred HHhHHHHHHhHhhh
Q 000113 1794 LEHTVNALEKKVYE 1807 (2159)
Q Consensus 1794 le~tin~LE~kV~~ 1807 (2159)
+|.-+..|++|...
T Consensus 127 ~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 127 WEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655443
No 152
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=81.00 E-value=0.49 Score=47.14 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=15.9
Q ss_pred eEeecccCCCcceeeccc
Q 000113 239 MFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM~G~ 256 (2159)
++.+|+||||||+++...
T Consensus 3 ~~i~~~~G~GKT~~~~~~ 20 (144)
T cd00046 3 VLLAAPTGSGKTLAALLP 20 (144)
T ss_pred EEEECCCCCchhHHHHHH
Confidence 578999999999999775
No 153
>PRK07952 DNA replication protein DnaC; Validated
Probab=80.89 E-value=1 Score=53.43 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=34.6
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
..+||........|..++..+ ...++.+..|+ ..++-||.+|+||||.+.+
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 467776554455676676554 34555554443 3689999999999999865
No 154
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=80.63 E-value=1.1 Score=50.65 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=31.3
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.|+||....+ .+..++..+-. + +..+....|+-||++||||||....
T Consensus 11 ~~~~~~~~~~--~~~~~~~~l~~-~---~~~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 11 DPTFDNFYAG--GNAELLAALRQ-L---AAGKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred chhhcCcCcC--CcHHHHHHHHH-H---HhcCCCCeEEEECCCCCCHHHHHHH
Confidence 3788877632 44455543321 1 2256677899999999999998743
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=80.51 E-value=0.92 Score=57.56 Aligned_cols=51 Identities=33% Similarity=0.497 Sum_probs=31.3
Q ss_pred ceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 202 TRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 202 ~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
..|+||..... .++...|..+ ..+...--.+|| .+|=||++|+||||.+.+
T Consensus 117 ~~~tfd~fv~g-~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 117 PKYTFDNFVVG-KSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCcccccccC-CCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 35889874432 2455555443 233333222355 478899999999999855
No 156
>PRK08116 hypothetical protein; Validated
Probab=80.48 E-value=1.1 Score=53.60 Aligned_cols=51 Identities=24% Similarity=0.334 Sum_probs=35.2
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcC--CCceeEeecccCCCcceeecc
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSG--YNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeG--yN~TIFAYGQTGSGKTYTM~G 255 (2159)
.++||... .+..+...|.. +...++++..+ .|..++-||.+||||||-+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 47888654 45556666654 45666766543 455699999999999998754
No 157
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.43 E-value=1.4e+02 Score=37.63 Aligned_cols=183 Identities=17% Similarity=0.217 Sum_probs=101.4
Q ss_pred hhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhh
Q 000113 1629 SLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLR 1708 (2159)
Q Consensus 1629 ~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~ 1708 (2159)
.|+.+..||.|....+++--.|=+.++.|++.+-.....++....+ +..+...-+...-...+.-.++|
T Consensus 3 KL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~e-------l~~~~~~~~d~~~~~~~~~~~La---- 71 (319)
T PF09789_consen 3 KLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRE-------LIQEAAGFGDPSIPPEKENKNLA---- 71 (319)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhcccCCccCCcccchhhHH----
Confidence 3667889999988889999999998888877543333332222211 11111111100000000000111
Q ss_pred hccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 000113 1709 IVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILE 1788 (2159)
Q Consensus 1709 ~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le 1788 (2159)
.-..+.......|+.++..+...=.-++.+|-.|+.++........+.+ ...+..+++.-|.-|
T Consensus 72 ---~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~------------~~~~~~ere~lV~qL- 135 (319)
T PF09789_consen 72 ---QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG------------ARHFPHEREDLVEQL- 135 (319)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc------------ccccchHHHHHHHHH-
Confidence 1133334444455555555555545556666666666666555443322 223447888888877
Q ss_pred HhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcccccc
Q 000113 1789 HSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSD 1841 (2159)
Q Consensus 1789 ~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~ 1841 (2159)
|.+-..+.-||..+--+-+|-+---.-|+....-.|-|-+++.-+=|-+.
T Consensus 136 ---Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~ 185 (319)
T PF09789_consen 136 ---EKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDE 185 (319)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45556666666666666666666666677777777778877776665554
No 158
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=80.40 E-value=1.2 Score=54.82 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=31.6
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHH-hhc--C--CCceeEeecccCCCcceeec
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVEN-CLS--G--YNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~-vLe--G--yN~TIFAYGQTGSGKTYTM~ 254 (2159)
.++|+.|.+-..--+.+.+.+..|+... .+. | ....|+-||++|+|||++.-
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 3566777665544445555555454332 222 2 13458899999999998863
No 159
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=80.31 E-value=1.3e+02 Score=35.46 Aligned_cols=86 Identities=24% Similarity=0.288 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhHHHHHHHHH-HHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHH
Q 000113 1749 LAMAYALADENEAIAVEARQ-ELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQ 1827 (2159)
Q Consensus 1749 le~a~a~a~e~eaia~ea~q-~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~ 1827 (2159)
++.|.++.+|.|-.=..|.- +.+.+++||.-+ -||+----|..-|--|.++-..+..|.+--.-.-.+|-.+-.
T Consensus 59 l~~aK~l~eEledLk~~~~~lEE~~~~L~aq~r-----qlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~ 133 (193)
T PF14662_consen 59 LQKAKALEEELEDLKTLAKSLEEENRSLLAQAR-----QLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKA 133 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhH
Confidence 44455555555555444443 344455555432 233333334444444444444444444333333334444555
Q ss_pred HHHHhhhhcccc
Q 000113 1828 ALRRRLSTVQNF 1839 (2159)
Q Consensus 1828 ~~~~~~~~v~n~ 1839 (2159)
+|+.++..+++.
T Consensus 134 ~Lq~Ql~~~e~l 145 (193)
T PF14662_consen 134 TLQRQLCEFESL 145 (193)
T ss_pred HHHHHHHHHHHH
Confidence 556555555544
No 160
>PRK06835 DNA replication protein DnaC; Validated
Probab=80.20 E-value=0.79 Score=56.41 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=26.7
Q ss_pred HHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 218 KLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 218 eVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.++.. +...|+++-.+. ..++-||+||+||||-+.+
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 44433 345777777655 6699999999999998765
No 161
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.11 E-value=40 Score=37.74 Aligned_cols=109 Identities=24% Similarity=0.241 Sum_probs=70.5
Q ss_pred hhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHH
Q 000113 1580 LLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLK 1659 (2159)
Q Consensus 1580 LLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~ 1659 (2159)
-|.++-|.+--++|.++-|=.-|..++.+++.=.-+.++.-.-..-|++++.....-+......++.+++++..|-.+++
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665555666665555555555544444333444444444456666666666666677777888888888888887
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 000113 1660 DLYLKKSEAEEHLEEQKEVITGLEKEILH 1688 (2159)
Q Consensus 1660 ~~~~~k~~~e~~L~e~~~vie~LE~eil~ 1688 (2159)
..=...++++....+-...|..+|.+-..
T Consensus 91 ~~q~kv~eLE~~~~~~~~~l~~~E~ek~q 119 (140)
T PF10473_consen 91 KKQEKVSELESLNSSLENLLQEKEQEKVQ 119 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777443
No 162
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=80.00 E-value=1 Score=45.39 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.0
Q ss_pred CCceeEeecccCCCcceee
Q 000113 235 YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYTM 253 (2159)
....++-+|++|+|||+++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4557889999999999876
No 163
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.74 E-value=1.1 Score=55.81 Aligned_cols=26 Identities=42% Similarity=0.645 Sum_probs=19.5
Q ss_pred HHHhhcCC-CceeEeecccCCCcceee
Q 000113 228 VENCLSGY-NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGy-N~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|. ...++.||.||||||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 44445444 444999999999999986
No 164
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=79.72 E-value=1.2 Score=56.24 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=36.9
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHH-HhhcC----CCceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVE-NCLSG----YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~-~vLeG----yN~TIFAYGQTGSGKTYTM 253 (2159)
.++|+.|.|.+..-+++.+.+..|+.. ..+.. ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 478888888776556677666667663 34442 3456889999999999986
No 165
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=79.61 E-value=2.6e+02 Score=38.55 Aligned_cols=89 Identities=26% Similarity=0.224 Sum_probs=62.8
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHH-HHHhhhhhHHHHHHHHHHHHhhhhhhhh
Q 000113 1701 ESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAM-AYALADENEAIAVEARQELEASKLYAEQ 1779 (2159)
Q Consensus 1701 ~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~-a~a~a~e~eaia~ea~q~ae~~k~yae~ 1779 (2159)
.+|-.++|.++|....++..+....++++++-.+-..|.....++.+.+++ ++-+-.--.-++-++.|.++=++.+-+.
T Consensus 261 ~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~ 340 (698)
T KOG0978|consen 261 SSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSK 340 (698)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888899999999989999999999999999999999999998 3333222233444666666666544443
Q ss_pred hhH---HHHHHHH
Q 000113 1780 KEE---EVKILEH 1789 (2159)
Q Consensus 1780 kee---evk~le~ 1789 (2159)
..+ +.+++.+
T Consensus 341 ~~~~~~~~~~~~~ 353 (698)
T KOG0978|consen 341 LLESAKKLKILLR 353 (698)
T ss_pred HHHHHHHHHhHHH
Confidence 322 4444544
No 166
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=79.41 E-value=2e+02 Score=38.83 Aligned_cols=189 Identities=20% Similarity=0.271 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 000113 914 KLDKLTEELETARVLNCQYQEDQASHLSCQHQVDLVR---EQVEMEATKTILQLQEEVASLQLELHENLCCMTEENTCLR 990 (2159)
Q Consensus 914 kl~rm~~~Le~a~~lN~~yq~d~a~q~~~~~e~d~v~---~qvE~et~~~I~~lqeel~~lq~e~~~~~~~~~~e~~~L~ 990 (2159)
..++|+..|++ +|.-|+.-.--+..-....+.+| .+++..-.+++.-.++++ +++..++.--+-.+++.+.
T Consensus 122 e~~~lk~~lee---~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~---~q~~~e~e~~L~~~~~~~~ 195 (629)
T KOG0963|consen 122 ENEELKEELEE---VNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKL---EQEWAEREAGLKDEEQNLQ 195 (629)
T ss_pred hHHHHHHHHHH---HHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34455555554 44444444444444333333333 344444444455555553 4444555544556666677
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcchhHHHhhhhhhhhhccCCCCchhhhHHHHHHHHHhhhhHHHHHHHHHh
Q 000113 991 NTIAAKEEEIRSRCTEWEKATLELTNFLADGSRSLRDASGQIESIVCLFPQFNVEVTENVGRAAKVCIEKDETILLLQKS 1070 (2159)
Q Consensus 991 ~~~~~ke~Ei~~l~~ewe~~t~el~~~L~dG~~sl~dAs~qi~~I~~SFP~~~~wIsEhV~~a~r~~iEKE~~I~~Lq~~ 1070 (2159)
+.+..-+..|.+|--.-+..-.+++.| .-++++=. .=|-..|..+-..
T Consensus 196 ~q~~~le~ki~~lq~a~~~t~~el~~~--------~s~~dee~------------------------~~k~aev~lim~e 243 (629)
T KOG0963|consen 196 EQLEELEKKISSLQSAIEDTQNELFDL--------KSKYDEEV------------------------AAKAAEVSLIMTE 243 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH--------HHhhhhhh------------------------HHHHHHHHHHHHH
Confidence 777777777777755555555555544 11222111 1122345666778
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhHhhhhcccchhhhHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHhh
Q 000113 1071 LEEAQKMVVEMKEKCISLKGATIALNEIQHLGNEECTDEAIHLSMTLNKKIEMVKLLESELKSKEDQITEAEK 1143 (2159)
Q Consensus 1071 LEdA~~m~~dme~kL~SLrgAtlainE~~q~~~~e~~~e~~~l~~~l~~k~~~v~~l~~~lk~ke~~i~ea~~ 1143 (2159)
|++||....+++--...|++++.--|+-...+ +...+=.+.+.|+.|...|++|-..+++.+-.+.+...
T Consensus 244 Le~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~---~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e 313 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQLAKANSSKKLA---KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEERE 313 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc---cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999889888887 34446667788999999999999999998888777644
No 167
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=79.19 E-value=1.6 Score=49.95 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=30.1
Q ss_pred ceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 202 TRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 202 ~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
..|+||.+++.. .+ .++.. .+.++.. .+.+..++=||++||||||-...
T Consensus 13 ~~~~~d~f~~~~-~~-~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVAGE-NA-ELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred ChhhhcccccCC-cH-HHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 358999887332 33 33322 2223221 23456799999999999998743
No 168
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.12 E-value=71 Score=35.68 Aligned_cols=38 Identities=34% Similarity=0.505 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHh
Q 000113 1777 AEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVER 1814 (2159)
Q Consensus 1777 ae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r 1814 (2159)
|++=++.||-||-.-..+|..|+-|-+|+..+..+|+.
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~ 53 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDK 53 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666666666666555555543
No 169
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.99 E-value=2.8e+02 Score=38.60 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=103.3
Q ss_pred HHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHH---HhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000113 1603 SQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALV---IAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVI 1679 (2159)
Q Consensus 1603 ~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~---~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vi 1679 (2159)
+.++.|+-.+-|+-..+..+.-.|+.+|---..... -..+...++-.+++.++...+.+...---+..+|+++..-|
T Consensus 688 eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~ 767 (970)
T KOG0946|consen 688 EELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADI 767 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333444444434334444444555555542222111 14566667777788888888888878888889999999999
Q ss_pred HHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHH----HHHHHHh
Q 000113 1680 TGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDK----LAMAYAL 1755 (2159)
Q Consensus 1680 e~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~k----le~a~a~ 1755 (2159)
+++-..+..-..+..++.... .|..|+ ++.+++ |+....--.+++.|+-.+++. ++..-|.
T Consensus 768 es~k~~~~~a~~~~~~~~~~~-----------~~qeqv---~El~~~-l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~ 832 (970)
T KOG0946|consen 768 ESFKATQRSAELSQGSLNDNL-----------GDQEQV---IELLKN-LSEESTRLQELQSELTQLKEQIQTLLERTSAA 832 (970)
T ss_pred HHHHHHHhhhhcccchhhhhh-----------hhHHHH---HHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999888875555533333332 222222 333333 555555555666666666653 3444455
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHh
Q 000113 1756 ADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRD 1820 (2159)
Q Consensus 1756 a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~ 1820 (2159)
|++-|+. ....++-|.++ +..|.-.-+|-..++-+-|-|-.+-|+...-..+.+
T Consensus 833 a~~le~m-------~~~~~~la~e~----~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qad 886 (970)
T KOG0946|consen 833 ADSLESM-------GSTEKNLANEL----KLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQAD 886 (970)
T ss_pred hhhhHHh-------hccccchhhHH----HHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhc
Confidence 5554443 34445555433 333444444555555555555555554444434444
No 170
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=77.61 E-value=1.1 Score=57.12 Aligned_cols=50 Identities=30% Similarity=0.420 Sum_probs=32.0
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.|+||..+... ++...|.. +..++..-=..|| .+|=||.+|+||||.|.+
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 48999866544 45556643 3344332111245 488999999999999855
No 171
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=77.35 E-value=2.9e+02 Score=37.81 Aligned_cols=98 Identities=31% Similarity=0.346 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHH---HhhhhhHHHHH-----------HHHHHHHhhhhhhhhhhHH
Q 000113 1718 CEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAY---ALADENEAIAV-----------EARQELEASKLYAEQKEEE 1783 (2159)
Q Consensus 1718 ~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~---a~a~e~eaia~-----------ea~q~ae~~k~yae~keee 1783 (2159)
---|.-++.++-.++.|||-|.-|+.+|++.|.-+. -||+=+|.|+. -++|.+-+.|.-|..|+.|
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~e 487 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAE 487 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 334667788899999999999999999998887665 45666777763 3678889999999999999
Q ss_pred --HHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhh
Q 000113 1784 --VKILEHSIEELEHTVNALEKKVYEMNGEVERHH 1816 (2159)
Q Consensus 1784 --vk~le~sveele~tin~LE~kV~~~k~e~~r~r 1816 (2159)
|+-+-.-|-+|++.-|-|+ .|-.-|+|+|++.
T Consensus 488 tl~~K~ge~i~~L~sE~~~lk-~il~~Kee~Ek~~ 521 (961)
T KOG4673|consen 488 TLEEKKGELITKLQSEENKLK-SILRDKEETEKLL 521 (961)
T ss_pred HHHHHhhhHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence 8888889999999999998 6777888888753
No 172
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=76.99 E-value=1.4e+02 Score=35.76 Aligned_cols=108 Identities=17% Similarity=0.271 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEE 1793 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~svee 1793 (2159)
..+...++..+--.-+.+-.+.++++..+-.+..+-.-|...++ |..| |+.++..+-|. ..++.++.++.+
T Consensus 40 l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LA---r~al~~~~~le----~~~~~~~~~~~~ 110 (225)
T COG1842 40 LAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLA---REALEEKQSLE----DLAKALEAELQQ 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHH---HHHHHHHHHHH----HHHHHHHHHHHH
Confidence 55555555555555555566666666666666666666655555 3333 33333333332 234444555555
Q ss_pred HHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHH
Q 000113 1794 LEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALR 1830 (2159)
Q Consensus 1794 le~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~ 1830 (2159)
+..++-.|+..+..+..-+.-.+-.++.+.....+-+
T Consensus 111 ~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ak 147 (225)
T COG1842 111 AEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAK 147 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444444444444555544444333
No 173
>PRK08939 primosomal protein DnaI; Reviewed
Probab=76.80 E-value=1.3 Score=54.06 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=34.9
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcC-CCceeEeecccCCCcceeeccc
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSG-YNSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeG-yN~TIFAYGQTGSGKTYTM~G~ 256 (2159)
.+|+.+-.....+..++..+ ...++....| ....++-||++|+||||-+.+-
T Consensus 124 atf~~~~~~~~~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Ai 176 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAI 176 (306)
T ss_pred CcHHHhcCCChHHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHHHH
Confidence 45554433333666777643 5666666544 3346999999999999998764
No 174
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=76.33 E-value=1.8 Score=55.40 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=32.4
Q ss_pred CceeEeceecCCCCChHHHHHhhchhHHHHh--hcC--CCceeEeecccCCCcceeecc
Q 000113 201 ETRFTFDHIACEMISQEKLFRVAGLPMVENC--LSG--YNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 201 ~~~FtFD~VFde~aSQEeVFe~v~~PLV~~v--LeG--yN~TIFAYGQTGSGKTYTM~G 255 (2159)
...|+||...... ++...|.. +..+.... ..| ||. +|=||++|+||||-+..
T Consensus 105 ~~~~tFdnFv~g~-~N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVTP-ENDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeCC-cHHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 3469999766543 45555533 33343322 223 454 67899999999999865
No 175
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=76.10 E-value=1.4 Score=55.77 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=40.6
Q ss_pred ceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHH
Q 000113 202 TRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLF 279 (2159)
Q Consensus 202 ~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF 279 (2159)
..|+||....... ..-.|..+ .-|...-.+.---+|=||.+|+||||-|..-.+.. ....++..++|-..++.|
T Consensus 82 ~~ytFdnFv~g~~-N~~A~aa~--~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~-~~~~~~a~v~y~~se~f~ 155 (408)
T COG0593 82 PKYTFDNFVVGPS-NRLAYAAA--KAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEA-LANGPNARVVYLTSEDFT 155 (408)
T ss_pred CCCchhheeeCCc-hHHHHHHH--HHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHH-HhhCCCceEEeccHHHHH
Confidence 4699997655443 33333222 22333333334458999999999999996532221 111233455555544444
No 176
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=75.83 E-value=1e+02 Score=42.71 Aligned_cols=155 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHH
Q 000113 1593 DETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHL 1672 (2159)
Q Consensus 1593 De~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L 1672 (2159)
++++.-..+...==..|..|-++|.. .|..|=....|.-.-+..++.+++.+..+|.+|-.+|+++=-+...++...
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~---~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~ 489 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQ---EHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKT 489 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHH
Q 000113 1673 EEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMA 1752 (2159)
Q Consensus 1673 ~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a 1752 (2159)
+++.++.++|+.|+..+--- ++.++..++.....--+.-.++--+-..-..-
T Consensus 490 e~~~~~le~l~~El~~l~~e----------------------------~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~ 541 (980)
T KOG0980|consen 490 ESQAKALESLRQELALLLIE----------------------------LEELQRTLSNLAQSHNNQLAQLEDLLKQKDRL 541 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHH
Q 000113 1753 YALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELE 1795 (2159)
Q Consensus 1753 ~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele 1795 (2159)
.+.+--.| +++++..+-+|||++-|+
T Consensus 542 ~~~~~~~~-----------------~e~~~~~~e~e~si~ql~ 567 (980)
T KOG0980|consen 542 AAELVARE-----------------EEREALRLEAERSINQLE 567 (980)
T ss_pred HHHHHHHH-----------------HHHHHHHHHHHhhHHHhh
No 177
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=75.82 E-value=2 Score=58.68 Aligned_cols=20 Identities=40% Similarity=0.680 Sum_probs=17.2
Q ss_pred CCCceeEeecccCCCcceee
Q 000113 234 GYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM 253 (2159)
|-+.++|-||+||+|||.|+
T Consensus 779 gpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44567899999999999997
No 178
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.55 E-value=56 Score=39.97 Aligned_cols=146 Identities=25% Similarity=0.275 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHH---------
Q 000113 1594 ETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLK--------- 1664 (2159)
Q Consensus 1594 e~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~--------- 1664 (2159)
++.+|-.-|..|..|=--|-.+||. |||-|+.-...+-..+.....|--||.-|....+++-..
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleS-------lEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLES-------LEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
Confidence 5677778888888888888888887 666666666666666666667777777666555544333
Q ss_pred -----HhhHHHHHHHHHHHHHHHHHHHhhhccc-----------chh---hhhhhhhhhhhhhhccchhhHHHHHHHHHH
Q 000113 1665 -----KSEAEEHLEEQKEVITGLEKEILHRTSE-----------DKK---LLTSVESIAEDLRIVTSDRDKLCEEVESVE 1725 (2159)
Q Consensus 1665 -----k~~~e~~L~e~~~vie~LE~eil~l~s~-----------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 1725 (2159)
.+-++.+|.--++-|+.||-||-.+-+- |-. .-|...+++.- ++..--...+-++.|+
T Consensus 92 ~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p---~tp~q~~~~sk~e~L~ 168 (307)
T PF10481_consen 92 VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATP---LTPSQYYSDSKYEELQ 168 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCC---CChhhhhhhhhHHHHH
Confidence 3567888888899999999998655432 100 00111111111 1222234557899999
Q ss_pred HHHHHHhhhhhhhHHHHHhhHHHH
Q 000113 1726 EELRKVSKERDKLWVEICSLNDKL 1749 (2159)
Q Consensus 1726 ~~l~~~~~Erd~l~~e~~~l~~kl 1749 (2159)
+..++--.||..|+.||..|.-|.
T Consensus 169 ekynkeveerkrle~e~k~lq~k~ 192 (307)
T PF10481_consen 169 EKYNKEVEERKRLEAEVKALQAKK 192 (307)
T ss_pred HHHHHHHHHHhhHHHHHHHHhccc
Confidence 999999999999999999887543
No 179
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.32 E-value=3.4e+02 Score=37.65 Aligned_cols=146 Identities=21% Similarity=0.289 Sum_probs=74.0
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchh
Q 000113 1642 GTIDTLSDQNADLRVLLKDLYLKKSEAEEHL-------EEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDR 1714 (2159)
Q Consensus 1642 ~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L-------~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~ 1714 (2159)
+.+-.+-.-|.-|-..|+-|-.++..+...| +-++.+|+++-+.+-.+-|. .
T Consensus 430 e~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~ise---------------------i 488 (1118)
T KOG1029|consen 430 EWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISE---------------------I 488 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHH---------------------H
Confidence 3333344444444444454444444444443 34556666665555444443 6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHH
Q 000113 1715 DKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEEL 1794 (2159)
Q Consensus 1715 ~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveel 1794 (2159)
+++-.-|+.+++.|-+++.||.-|...+... -.|.-.++ + +..+-.+. -..|+.=.+-|+.-++||
T Consensus 489 ~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~------q~a~~~~~-~------~~s~L~aa-~~~ke~irq~ikdqldel 554 (1118)
T KOG1029|consen 489 DQLQARIKELQEKLQKLAPEKQELNHQLKQK------QSAHKETT-Q------RKSELEAA-RRKKELIRQAIKDQLDEL 554 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh------hhhccCcc-h------HHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 7777778888888888888887665554321 11111111 0 00010000 112222223333333333
Q ss_pred H-------hHHHHHHhHhhhhhhhHHhhhhhHhhH
Q 000113 1795 E-------HTVNALEKKVYEMNGEVERHHLIRDSL 1822 (2159)
Q Consensus 1795 e-------~tin~LE~kV~~~k~e~~r~r~~r~~l 1822 (2159)
+ +.|+.+-|+..++|+++-.+.+..++|
T Consensus 555 skE~esk~~eidi~n~qlkelk~~~~~q~lake~~ 589 (1118)
T KOG1029|consen 555 SKETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL 589 (1118)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 245677777778888887777776644
No 180
>PF12846 AAA_10: AAA-like domain
Probab=75.19 E-value=1 Score=52.12 Aligned_cols=19 Identities=42% Similarity=0.586 Sum_probs=16.9
Q ss_pred CceeEeecccCCCcceeec
Q 000113 236 NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~ 254 (2159)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 6678999999999999985
No 181
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=74.73 E-value=0.97 Score=46.53 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=13.2
Q ss_pred CceeEeecccCCCcceee
Q 000113 236 NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM 253 (2159)
+.+++-||++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 467899999999999986
No 182
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=74.66 E-value=1.1 Score=51.19 Aligned_cols=17 Identities=41% Similarity=0.685 Sum_probs=14.3
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
-.+.-.|.||||||||+
T Consensus 24 ~H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTV 40 (229)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34567899999999998
No 183
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=74.25 E-value=1.4 Score=57.80 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=24.9
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.+..++..-+|.|+-.|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 46677777889999999999999999855
No 184
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=74.05 E-value=1 Score=60.41 Aligned_cols=118 Identities=25% Similarity=0.404 Sum_probs=0.0
Q ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHH-HhhhhhHHHHHH---HHHHHHhhhhhhhhh
Q 000113 1705 EDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAY-ALADENEAIAVE---ARQELEASKLYAEQK 1780 (2159)
Q Consensus 1705 ~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~-a~a~e~eaia~e---a~q~ae~~k~yae~k 1780 (2159)
+++..+..+.+.+......+...+..+..||+.|+.|...|..++.-.- +..+.+...+++ +|..-+.-+-=-+++
T Consensus 179 ~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~ 258 (713)
T PF05622_consen 179 EELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERL 258 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666667777888899999999999888887776544 222222211111 111111101001123
Q ss_pred hHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhH
Q 000113 1781 EEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSL 1822 (2159)
Q Consensus 1781 eeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~l 1822 (2159)
++-.--++..++++|..|.-|-.++..+--++++-+-.|+++
T Consensus 259 e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDEl 300 (713)
T PF05622_consen 259 EEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDEL 300 (713)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 333333455666677777777777777777777766666643
No 185
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=74.02 E-value=3 Score=53.42 Aligned_cols=91 Identities=18% Similarity=0.234 Sum_probs=50.5
Q ss_pred eEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCCC------------CceeEeceecCCCCChHHHHHhhchhHHHH
Q 000113 163 VQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHP------------ETRFTFDHIACEMISQEKLFRVAGLPMVEN 230 (2159)
Q Consensus 163 VrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~p------------~~~FtFD~VFde~aSQEeVFe~v~~PLV~~ 230 (2159)
-..+|++.++.+.+...+|....+...+...+-.+... ...-+|+.|.+-+..-+.+.+.+..|+...
T Consensus 127 ~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p 206 (438)
T PTZ00361 127 PEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHP 206 (438)
T ss_pred CEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCH
Confidence 35788988888777666666555544332222111100 001345666554434455666665565532
Q ss_pred h-hc--CC--CceeEeecccCCCcceee
Q 000113 231 C-LS--GY--NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 231 v-Le--Gy--N~TIFAYGQTGSGKTYTM 253 (2159)
- +. |. ...|+-||++|||||++.
T Consensus 207 ~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 207 ELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred HHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 2 22 21 234777999999999886
No 186
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.90 E-value=3.3e+02 Score=36.75 Aligned_cols=179 Identities=18% Similarity=0.277 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHh
Q 000113 1717 LCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEH 1796 (2159)
Q Consensus 1717 ~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~ 1796 (2159)
|-..++-+++++..+.-|+..|+.++-.|+.+++.- -|.+ ++-.+.-+ |---|.|-|..+.+
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q--------~iS~-----~dve~mn~-----Er~~l~r~l~~i~~ 353 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ--------GISG-----EDVERMNL-----ERNKLKRELNKIQS 353 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCH-----HHHHHHHH-----HHHHHHHHHHHHHH
Confidence 344455666666666666677777777777666542 1111 11111111 22336677777777
Q ss_pred HHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhc-cccccc--cccccccCC-C-----chhhhhhhHHHHHHH
Q 000113 1797 TVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTV-QNFSDI--VDSENINAG-H-----TEDQMSRKLQDRLLQ 1867 (2159)
Q Consensus 1797 tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v-~n~~~~--~~~~~~~~~-~-----~~~~~~r~~~~~~~~ 1867 (2159)
-+..|=++|-+.+-|+++.-=.-+.+=.+++.+++++..+ -+...+ ..+++.++. . -..-+..-++++...
T Consensus 354 ~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~ 433 (581)
T KOG0995|consen 354 ELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEE 433 (581)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHH
Confidence 7778888888888888776555555556667777787776 111111 122211111 0 112335567788888
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 000113 1868 LQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQK 1913 (2159)
Q Consensus 1868 l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k 1913 (2159)
+++|.+..-.|+..+.++..-|.-.+.-..++-+-.--.-+.|+++
T Consensus 434 ~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~ 479 (581)
T KOG0995|consen 434 LHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELK 479 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998888888888877766655554444433332223344443
No 187
>PRK09183 transposase/IS protein; Provisional
Probab=73.79 E-value=2.1 Score=50.90 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=28.5
Q ss_pred eceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 206 FDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 206 FD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
||+-|.+..+...|..-..... +-.|.| |+-||++|+||||-+.+
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHH
Confidence 5555666666665554333222 224554 56799999999998865
No 188
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.67 E-value=59 Score=40.53 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=67.7
Q ss_pred HHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHH
Q 000113 1786 ILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRL 1865 (2159)
Q Consensus 1786 ~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~ 1865 (2159)
.|++-++.|.+--++|.+++..+++-+..-+-....|..|+..|++.-..+++.+. .+ -+..+-.+.+..
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~---~e-------L~~lk~~l~~~~ 217 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDP---TE-------LDRAKEKLKKLL 217 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCH---HH-------HHHHHHHHHHHH
Confidence 34555555555555666666666666666666666677776666665555554442 11 122233333334
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhh--------------hhhhHHHHHHHHHHHHHHHHH
Q 000113 1866 LQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEV--------------VLHSEAQASQYQQKYKTLEAM 1920 (2159)
Q Consensus 1866 ~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel--------------~lh~eaqa~~y~~k~k~lEaM 1920 (2159)
.++...++.+..++.+....+..|...++-++|+ .-.+-..+..++.+|..||..
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333333333 234556678899999988864
No 189
>PRK09039 hypothetical protein; Validated
Probab=73.65 E-value=92 Score=39.21 Aligned_cols=14 Identities=14% Similarity=0.045 Sum_probs=8.8
Q ss_pred cccccCCCCCCcch
Q 000113 1945 SSTRLRGSSSPFRC 1958 (2159)
Q Consensus 1945 ~s~rtRGS~SPFrC 1958 (2159)
..+...|+.-|.-|
T Consensus 310 i~~~G~G~~~Pi~~ 323 (343)
T PRK09039 310 LAAAGFGEFQPLDP 323 (343)
T ss_pred eEEEEeCCcCcCCC
Confidence 44566777777654
No 190
>PRK10436 hypothetical protein; Provisional
Probab=73.19 E-value=1.6 Score=56.23 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=23.8
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.+..++..-+|.|+-.|+||||||.||..
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 34556667789999999999999999954
No 191
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=73.06 E-value=3.9 Score=50.37 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=20.3
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.++..++.+ ..+|+-.|.||||||++|.
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 455666665 4566777999999997763
No 192
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.04 E-value=1.7 Score=56.15 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=24.2
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.+..++..-++.|+-.|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45566777788899999999999999964
No 193
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=72.92 E-value=1.5 Score=46.81 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=20.7
Q ss_pred HHHhhcCCCceeEeecccCCCcceeeccc
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G~ 256 (2159)
+..+..|.| ++..|+||||||+.....
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~~~~ 34 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAYILP 34 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHHHHH
Confidence 344455655 889999999999998764
No 194
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=72.21 E-value=2.7 Score=52.76 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=33.7
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHH-HhhcC----CCceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVE-NCLSG----YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~-~vLeG----yN~TIFAYGQTGSGKTYTM 253 (2159)
.++||.|.+-+..=+++.+.+..|+.. ..+.. ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 367777776654446666666666554 23332 2456888999999999875
No 195
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=72.01 E-value=2e+02 Score=33.54 Aligned_cols=100 Identities=22% Similarity=0.241 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEE 1793 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~svee 1793 (2159)
..++..++..+-..-..+..+.+.+..++-.+.++.+.|..-- +|-.|.+|-+.-..-...++.=+..+.-+...|+.
T Consensus 39 l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g--~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~ 116 (221)
T PF04012_consen 39 LRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG--REDLAREALQRKADLEEQAERLEQQLDQAEAQVEK 116 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555566666677777777777777664443 44455444333222222333444555566666666
Q ss_pred HHhHHHHHHhHhhhhhhhHHhh
Q 000113 1794 LEHTVNALEKKVYEMNGEVERH 1815 (2159)
Q Consensus 1794 le~tin~LE~kV~~~k~e~~r~ 1815 (2159)
|...+..|+.++.+++.+....
T Consensus 117 l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 117 LKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665554443
No 196
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=71.86 E-value=14 Score=49.67 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=5.0
Q ss_pred EEEeeeeee
Q 000113 298 CKCSFLEIY 306 (2159)
Q Consensus 298 VkvSflEIY 306 (2159)
+++||-||-
T Consensus 711 ~rmpyeeik 719 (1102)
T KOG1924|consen 711 FRMPYEEIK 719 (1102)
T ss_pred ccCCHHHHH
Confidence 445665554
No 197
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=71.84 E-value=1.4 Score=43.66 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.4
Q ss_pred ceeEeecccCCCcceeecc
Q 000113 237 SCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G 255 (2159)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999999855
No 198
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=71.40 E-value=1.6 Score=49.29 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.6
Q ss_pred ceeEeecccCCCcceeeccc
Q 000113 237 SCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G~ 256 (2159)
-.++-||++|+||||...+-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai 67 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAI 67 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHH
Confidence 45899999999999998663
No 199
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=71.18 E-value=2 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=18.8
Q ss_pred CCCceeEeecccCCCcceeecc
Q 000113 234 GYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM~G 255 (2159)
--++.|+-.|+||||||.||..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHH
Confidence 3468999999999999999844
No 200
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=70.82 E-value=4.8e+02 Score=37.37 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=60.2
Q ss_pred hhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhh
Q 000113 1780 KEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSR 1859 (2159)
Q Consensus 1780 keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r 1859 (2159)
..++-+-||+++..=..|+|-|+..++.+..+|||.|= |+-....+.-+++.+--|+ ++
T Consensus 186 lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~re-r~~~~~~Ie~l~~k~~~v~--------------------y~ 244 (1072)
T KOG0979|consen 186 LREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRE-RERKKSKIELLEKKKKWVE--------------------YK 244 (1072)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccc--------------------hH
Confidence 44556778999999999999999999999999998762 2222222222332222222 45
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhh
Q 000113 1860 KLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVV 1900 (2159)
Q Consensus 1860 ~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~ 1900 (2159)
+.+.+-.+..+|..+ +..++...+++++-|-.|+-||-
T Consensus 245 ~~~~ey~~~k~~~~r---~k~~~r~l~k~~~pi~~~~eeLe 282 (1072)
T KOG0979|consen 245 KHDREYNAYKQAKDR---AKKELRKLEKEIKPIEDKKEELE 282 (1072)
T ss_pred hhhHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhhhhhHH
Confidence 555555555555543 44555556666666666666553
No 201
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=70.78 E-value=4e+02 Score=36.46 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=26.3
Q ss_pred HhhhhhhcchhhhhhHhhhhHHHHHHHhcccc
Q 000113 2103 AQNDMLKMDKTNLLKRISELDDMVKMLIGTQS 2134 (2159)
Q Consensus 2103 aqnemLk~e~~n~~~ki~eLd~~vk~L~g~qn 2134 (2159)
.....|--|+...|-|+-||-+.|-.|+|.-|
T Consensus 477 ~~i~~l~~~~e~mk~kl~elq~lv~~l~~~~~ 508 (617)
T PF15070_consen 477 EYISRLAQDREEMKVKLLELQELVLRLVGDHN 508 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33456778888889999999999999998755
No 202
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=70.66 E-value=3.1 Score=49.54 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=33.0
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccc
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~ 256 (2159)
+|.|..+-.+...+..+|..+. .++..+-.|. .++-||++|+||||-..+-
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~--nl~l~G~~G~GKThLa~Ai 125 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDLA-SLVEFFERGE--NLVLLGPPGVGKTHLAIAI 125 (254)
T ss_pred CcccccccCCcchhHHHHHHHH-HHHHHhccCC--cEEEECCCCCcHHHHHHHH
Confidence 4544444444456777776654 5665655333 4577999999999987653
No 203
>PRK06921 hypothetical protein; Provisional
Probab=70.64 E-value=2.9 Score=50.00 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=22.6
Q ss_pred chhHHHHhhc---CCCceeEeecccCCCcceeecc
Q 000113 224 GLPMVENCLS---GYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 224 ~~PLV~~vLe---GyN~TIFAYGQTGSGKTYTM~G 255 (2159)
+...++++-. +....++-||++|+||||.+.+
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 3445555532 2345689999999999999865
No 204
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=70.47 E-value=3.2e+02 Score=35.24 Aligned_cols=181 Identities=21% Similarity=0.256 Sum_probs=106.3
Q ss_pred HhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000113 1804 KVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKE 1883 (2159)
Q Consensus 1804 kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~ 1883 (2159)
+|....+|-+--+.-|+----||++.|+.-..|+ -.+.+--..+..|+....-+.+..-
T Consensus 89 el~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~---------------------~~~~~a~~n~~kAqQ~lar~t~Q~q 147 (499)
T COG4372 89 ELGTAQGEKRAAETEREAARSELQKARQEREAVR---------------------QELAAARQNLAKAQQELARLTKQAQ 147 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555556666666555554 2222223344555555555555555
Q ss_pred hhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccccccCCCCCCcchhhHHH
Q 000113 1884 EQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQTNLSNTTAAAAPAQDKIEKSSTRLRGSSSPFRCIASVV 1963 (2159)
Q Consensus 1884 ~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~~~~~~~~~~~~~~k~EK~s~rtRGS~SPFrCI~glv 1963 (2159)
....+++++-+.-.- |.+++|+.+-++ |.|-+-+.++|+.
T Consensus 148 ~lqtrl~~l~~qr~q--l~aq~qsl~a~~--k~LQ~s~~Qlk~~------------------------------------ 187 (499)
T COG4372 148 DLQTRLKTLAEQRRQ--LEAQAQSLQASQ--KQLQASATQLKSQ------------------------------------ 187 (499)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHH------------------------------------
Confidence 555555554443322 335666644444 5888888888887
Q ss_pred HHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhcchhHHHHhhhcccccccchhhhhhhHHHHHHHHHHH
Q 000113 1964 QQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAESMTHDVIRDLLGVKLDMTNYANLIDQEHVQKLVVAAQ 2043 (2159)
Q Consensus 1964 QQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eSMTHDVIRdLLGVKldmTnyA~liD~~q~~kl~e~a~ 2043 (2159)
|.+|+.---+||-=+--+++|+--|-.+.-+||- ..-++|
T Consensus 188 -------~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~---------------------------------r~aa~Q 227 (499)
T COG4372 188 -------VLDLKLRSAQIEQEAQNLATRANAAQARTEELAR---------------------------------RAAAAQ 227 (499)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHH
Confidence 7788877777988888888888766666555542 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHhhhhhHHHH
Q 000113 2044 QQTQELLAKEQIILNLRKRI---EDLIEEHESCTSILKQREADIL 2085 (2159)
Q Consensus 2044 ~~~~e~~~ke~e~~~Lk~q~---~~lieEr~s~~~ei~~k~ad~~ 2085 (2159)
+...+..-.+..+.++-++| ++-|.+|++-+.++.+-++-+-
T Consensus 228 q~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~le 272 (499)
T COG4372 228 QTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLE 272 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555566665555 5778888888888776665543
No 205
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=70.41 E-value=2 Score=52.87 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred HHhhcCCCceeEeecccCCCcceeecc
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
..++.--.+.|+-.|+||||||.||..
T Consensus 115 ~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 115 RELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 333433357899999999999999954
No 206
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=70.26 E-value=1.8 Score=50.89 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=16.2
Q ss_pred CceeEeecccCCCcceee
Q 000113 236 NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM 253 (2159)
.+.|+--|.||||||.||
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 677888899999999998
No 207
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=68.67 E-value=3.2e+02 Score=34.45 Aligned_cols=133 Identities=23% Similarity=0.315 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhH---------------HHHhhhhhhHHhhhhHHHHHHHHH
Q 000113 1596 EKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENA---------------LVIAKGTIDTLSDQNADLRVLLKD 1660 (2159)
Q Consensus 1596 e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~a---------------l~~~~~~~~~ls~eN~eLr~~l~~ 1660 (2159)
....+.+.+++|||.+|..-|- ++.+..--...-...... +-..+..+..|-.||..||.....
T Consensus 107 ~~~~e~v~qLrHeL~~kdeLL~-~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~ 185 (306)
T PF04849_consen 107 GAALEQVEQLRHELSMKDELLQ-IYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQ 185 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778999999999943322 222222111111222211 122778899999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHH
Q 000113 1661 LYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWV 1740 (2159)
Q Consensus 1661 ~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~ 1740 (2159)
+-......|++ |+.=|.+-. + +|++ -+..|.+|.++|..-+.+-..-++
T Consensus 186 L~~et~~~Eek--EqqLv~dcv-~---QL~~-------------------------An~qia~LseELa~k~Ee~~rQQE 234 (306)
T PF04849_consen 186 LKTETDTYEEK--EQQLVLDCV-K---QLSE-------------------------ANQQIASLSEELARKTEENRRQQE 234 (306)
T ss_pred hhHHHhhccHH--HHHHHHHHH-H---Hhhh-------------------------cchhHHHHHHHHHHHHHHHHHHHH
Confidence 98888877776 554444321 1 2222 245567777777777777777777
Q ss_pred HHHhhHHHHH----HHHHhhhhhH
Q 000113 1741 EICSLNDKLA----MAYALADENE 1760 (2159)
Q Consensus 1741 e~~~l~~kle----~a~a~a~e~e 1760 (2159)
||-.|--++- ....++-|||
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnE 258 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENE 258 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Confidence 7776665543 2334444544
No 208
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=68.56 E-value=2.4 Score=53.26 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=17.4
Q ss_pred CCceeEeecccCCCcceeec
Q 000113 235 YNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYTM~ 254 (2159)
.++.|+-.|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46678899999999999984
No 209
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=68.55 E-value=17 Score=45.92 Aligned_cols=119 Identities=25% Similarity=0.316 Sum_probs=91.6
Q ss_pred hhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhH
Q 000113 1703 IAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEE 1782 (2159)
Q Consensus 1703 ~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~kee 1782 (2159)
|.+-|-+|.|-+=+--++|-++++.-++|..-=..||.|--.|.+-||. -||+||.-.-|--+.++
T Consensus 109 i~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLEr--------------rrQEaeELEgyCsqLk~ 174 (558)
T PF15358_consen 109 ITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLER--------------RRQEAEELEGYCSQLKE 174 (558)
T ss_pred HHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHh--------------hhhHHHHHHHHHHHHHH
Confidence 4455566666677778899999999999999999999999999999986 47788888889999999
Q ss_pred HHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHh--hhhhHhhH---HHHHHHHHHhhhh
Q 000113 1783 EVKILEHSIEELEHTVNALEKKVYEMNGEVER--HHLIRDSL---ELEIQALRRRLST 1835 (2159)
Q Consensus 1783 evk~le~sveele~tin~LE~kV~~~k~e~~r--~r~~r~~l---e~e~~~~~~~~~~ 1835 (2159)
-.+..++|||+-|-..|||..--..+.+-.+. ++|+-|.. |.|+|.|.|+|..
T Consensus 175 nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLqdE~prrqe~e~qELeqklea 232 (558)
T PF15358_consen 175 NCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQDETPRRQEAEWQELEQKLEA 232 (558)
T ss_pred HHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHhh
Confidence 99999999999999999876444444333332 23333322 6889999987765
No 210
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=68.07 E-value=1.9 Score=49.01 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=16.6
Q ss_pred CceeEeecccCCCcceeec
Q 000113 236 NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~ 254 (2159)
+|.|+-.|+||||||.|+.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999984
No 211
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.68 E-value=14 Score=36.44 Aligned_cols=52 Identities=33% Similarity=0.454 Sum_probs=44.2
Q ss_pred HHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccc
Q 000113 1787 LEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQN 1838 (2159)
Q Consensus 1787 le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n 1838 (2159)
+|.-|++||..+--+|.-|..|+..|-+|.-.=+.|+..++.|+.++..+..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6778999999999999999999999999999999999999999999998873
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.30 E-value=91 Score=40.47 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 000113 1870 EAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQTN 1927 (2159)
Q Consensus 1870 ~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k~~ 1927 (2159)
.+.+.++.+++.+-.+|+.|.-++|.+-.|-.|-||| ||+| +=..+++-+
T Consensus 418 kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~q-----qklk---~dt~eIqeg 467 (493)
T KOG0804|consen 418 KLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQ-----QKLK---SDTDEIQEG 467 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhh-----hhhh---cchhhhcCc
Confidence 3445556667777778888888888888888887775 6666 223345544
No 213
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=67.12 E-value=3.3e+02 Score=34.11 Aligned_cols=222 Identities=23% Similarity=0.298 Sum_probs=123.1
Q ss_pred HHHhhHHHHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhh
Q 000113 1562 KELQRKEVLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAK 1641 (2159)
Q Consensus 1562 ~El~RK~~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~ 1641 (2159)
.|++-|-+.+++..-++.=.+ |++.+-+.++.+-+.+|-.|.-++-+ ..+.|-.+.-+..+-+.--+
T Consensus 9 ~E~e~K~~~lk~~~~e~~ekR----------~El~~~~~~~~ekRdeln~kvrE~~e---~~~elr~~rdeineev~elK 75 (294)
T COG1340 9 DELELKRKQLKEEIEELKEKR----------DELRKEASELAEKRDELNAKVRELRE---KAQELREERDEINEEVQELK 75 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 355555557777777665333 88888888888888888888776665 55555554444444443333
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhh------hhhhhhhhhccc
Q 000113 1642 GTIDTLSDQNADLRVLLKDLYLKKS---EAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSV------ESIAEDLRIVTS 1712 (2159)
Q Consensus 1642 ~~~~~ls~eN~eLr~~l~~~~~~k~---~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~------~~~~~~~~~~~~ 1712 (2159)
.--+.+...=++|+..+.++.-... ..--.+....+.|+.||.-+. |+. ||.. .-|+ +||.-.-
T Consensus 76 ~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~--T~~----L~~e~E~~lvq~I~-~L~k~le 148 (294)
T COG1340 76 EKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQ--TSV----LTPEEERELVQKIK-ELRKELE 148 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHH--hcC----CChHHHHHHHHHHH-HHHHHHH
Confidence 3333333333334444444443333 122234455666777766543 332 1111 1111 2333333
Q ss_pred hhhHHH---HHHHHHHHHHHHHhhhhhhhHHHHHhhHH-------HHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhH
Q 000113 1713 DRDKLC---EEVESVEEELRKVSKERDKLWVEICSLND-------KLAMAYALADENEAIAVEARQELEASKLYAEQKEE 1782 (2159)
Q Consensus 1713 ~~~~~~---~~v~~l~~~l~~~~~Erd~l~~e~~~l~~-------kle~a~a~a~e~eaia~ea~q~ae~~k~yae~kee 1782 (2159)
+..+.+ ..+..+..+++.+-+++.-++.+|-.|-+ ++-.++.-|||-=.-|-++.....-...-+++--+
T Consensus 149 ~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~e 228 (294)
T COG1340 149 DAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHE 228 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333222 22333334555555555555555544433 33445555666666666676666666666778888
Q ss_pred HHHHHHHhHHHHHhHHHHHHh
Q 000113 1783 EVKILEHSIEELEHTVNALEK 1803 (2159)
Q Consensus 1783 evk~le~sveele~tin~LE~ 1803 (2159)
|.+-+...+.+|+--|..|.-
T Consensus 229 e~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 229 EFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887764
No 214
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=66.60 E-value=2.7e+02 Score=32.83 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=37.8
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHH
Q 000113 1643 TIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVE 1722 (2159)
Q Consensus 1643 ~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1722 (2159)
-|..|-.+..+|...|.++-.+..-+...---+.+.+...|.-=.+|.-. ..+-.+|+|++-....+......
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpql-------l~~h~eEvr~Lr~~LR~~q~~~r 85 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQL-------LQRHNEEVRVLRERLRKSQEQER 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544444444444445554443332222222 22234555555555555554444
Q ss_pred HHHHHHHHH
Q 000113 1723 SVEEELRKV 1731 (2159)
Q Consensus 1723 ~l~~~l~~~ 1731 (2159)
.++..+++.
T Consensus 86 ~~~~klk~~ 94 (194)
T PF15619_consen 86 ELERKLKDK 94 (194)
T ss_pred HHHHHHHHH
Confidence 444444443
No 215
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=66.56 E-value=2.6e+02 Score=32.67 Aligned_cols=113 Identities=23% Similarity=0.271 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHH--Hhhhhhhhhh---hHHHHHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQEL--EASKLYAEQK---EEEVKILE 1788 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~a--e~~k~yae~k---eeevk~le 1788 (2159)
..-+.-.|..+++.|.++...-...-..-..|..+++.+...+++-+.-|..|-+.- +.-+.++..| +..+..|+
T Consensus 25 ~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 25 EKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566688888888888888888888888899999999999999988887774421 1112222222 34556666
Q ss_pred HhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHH
Q 000113 1789 HSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEI 1826 (2159)
Q Consensus 1789 ~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~ 1826 (2159)
..++.++.+|.-|.+.+..++......+-.++.|-.-.
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777766666666666666666554443
No 216
>PRK02119 hypothetical protein; Provisional
Probab=66.27 E-value=24 Score=35.37 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=50.0
Q ss_pred HHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcc
Q 000113 1784 VKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1784 vk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
..-+|.-+.+||..+--.|.-|..|++-|-+|+-+=+.|..++..|++++..+.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445888999999999999999999999999999999999999999999998876
No 217
>PF13245 AAA_19: Part of AAA domain
Probab=66.06 E-value=2.8 Score=41.52 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=18.2
Q ss_pred HHHhhcCCCceeEeecccCCCcceeecc
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
|..++. -+..+.-.|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 444555 233344499999999999854
No 218
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=65.88 E-value=3.9e+02 Score=34.45 Aligned_cols=91 Identities=26% Similarity=0.344 Sum_probs=52.7
Q ss_pred HHHhhhhChHHHHHHHHH-HHHHHHHHHHHHHhhh--h-------------HHHH-----------HHHHHHHHHHHHHH
Q 000113 666 LQARIDRNPELTRFALEN-IRLLEQLQLFQSFYEQ--G-------------EREK-----------LLAELAELRDQLLD 718 (2159)
Q Consensus 666 Lq~~~d~~~Ev~~~~~En-~~L~eel~~~~~f~~~--g-------------ere~-----------l~~ei~~Lr~ql~~ 718 (2159)
|+.-...++|+.+-..|. .+|..|+.+++.|.-. | |-|+ |-.||+.|++.|-.
T Consensus 458 LRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQt 537 (593)
T KOG4807|consen 458 LRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQT 537 (593)
T ss_pred HHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666666553 4788888888887521 1 3343 55799999999999
Q ss_pred HhhcccccccccchhhhhhHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 000113 719 IVEGKERFSSRHENQENDTTTELENCRNMNSKLMREVEELRTELR 763 (2159)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~l~r~~~~~~~~~~ 763 (2159)
++..|--.|.+. +++--||.- .+.|-.++|..|...|.
T Consensus 538 alrDKkyaSdKY----kDiYtELSi---aKakadcdIsrLKEqLk 575 (593)
T KOG4807|consen 538 ALRDKKYASDKY----KDIYTELSI---AKAKADCDISRLKEQLK 575 (593)
T ss_pred HHhhhhccccch----hHHHHHHHH---HHHhhhccHHHHHHHHH
Confidence 887764333332 333334432 23344445555554444
No 219
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=65.63 E-value=4 Score=50.27 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=23.7
Q ss_pred HHhhchhHHHHhhcC-CCceeEeecccCCCcceeec
Q 000113 220 FRVAGLPMVENCLSG-YNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 220 Fe~v~~PLV~~vLeG-yN~TIFAYGQTGSGKTYTM~ 254 (2159)
++..+..++.+.+.| .--..+=||+.|+|||.|..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 333444555566655 34456889999999999973
No 220
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=65.48 E-value=9.9 Score=45.33 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=32.3
Q ss_pred EeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccceeEeEeEeeeccCCccc
Q 000113 340 NVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLNLVDLAGSERQ 408 (2159)
Q Consensus 340 ~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r~SKL~LVDLAGSER~ 408 (2159)
.+.+++++...+..... |..+ + ...-|.-++.+.|.... ...|.||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~-~~~~-~----~~~~s~~~i~l~i~~p~---------~~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETD-RVTG-T----NKGISPVPINLRVYSPH---------VLNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHH-HhcC-C----CCcccCcceEEEEeCCC---------CCceEEEeCCCcccc
Confidence 34678888888765432 1111 1 12345567777775431 145899999998643
No 221
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=65.13 E-value=72 Score=33.94 Aligned_cols=86 Identities=26% Similarity=0.316 Sum_probs=67.5
Q ss_pred HHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhh
Q 000113 1730 KVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMN 1809 (2159)
Q Consensus 1730 ~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k 1809 (2159)
.+..+...|...-..|.+.+..=-..-.+|++-.+.|.+.|+.-.--..+++.|++-|-..++.|.+-+.-|++
T Consensus 29 ~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~------ 102 (126)
T PF13863_consen 29 QLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEE------ 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34456666777777777777777788899999999999999988888889999999888888888888887776
Q ss_pred hhHHhhhhhHhhH
Q 000113 1810 GEVERHHLIRDSL 1822 (2159)
Q Consensus 1810 ~e~~r~r~~r~~l 1822 (2159)
.+.++..+.+=|
T Consensus 103 -~l~~~~~Y~~fL 114 (126)
T PF13863_consen 103 -KLEEYKKYEEFL 114 (126)
T ss_pred -HHHHHHHHHHHH
Confidence 555666665544
No 222
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=65.10 E-value=94 Score=36.82 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=28.7
Q ss_pred hhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhcc
Q 000113 1971 DQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAESM 2008 (2159)
Q Consensus 1971 DqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eSM 2008 (2159)
.+++.+|.-|+.|||.- |=.|+++|+-=|.|
T Consensus 128 ~eel~~a~~K~qemE~R-------IK~LhaqI~EKDAm 158 (205)
T PF12240_consen 128 EEELHMANRKCQEMENR-------IKALHAQIAEKDAM 158 (205)
T ss_pred hHHHHHhhhhHHHHHHH-------HHHHHHHHHHHHHH
Confidence 57899999999999998 89999999999987
No 223
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=65.06 E-value=86 Score=35.62 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=56.0
Q ss_pred HhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhh
Q 000113 1627 EASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAED 1706 (2159)
Q Consensus 1627 E~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~ 1706 (2159)
++++.+....+......++.+...+.++...+..+-...+...+.+....+-+..++..+-.+...
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e-------------- 145 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKE-------------- 145 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 344444444444444555555555555555555555555555555555554455554444433333
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHH
Q 000113 1707 LRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLND 1747 (2159)
Q Consensus 1707 ~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~ 1747 (2159)
++-+.....+....++.+...+......+.+|...+..+++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 146 IRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111335555666666666666666666666666555544
No 224
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=65.03 E-value=21 Score=42.96 Aligned_cols=35 Identities=37% Similarity=0.456 Sum_probs=29.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 000113 1658 LKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSE 1692 (2159)
Q Consensus 1658 l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~ 1692 (2159)
|+++-.+...++.++++++++|+.||..|..+...
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566677889999999999999999999998844
No 225
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=64.97 E-value=3.3 Score=47.25 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=20.7
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeec
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.|..++.+.+..++-.|+.||||||+|-
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3455566655566678999999999974
No 226
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.70 E-value=5.3 Score=50.08 Aligned_cols=86 Identities=21% Similarity=0.384 Sum_probs=49.8
Q ss_pred EEEEEeCCCCChhcccCCceeEEecCCCceEEEc--------------CCCCceeEeceecCCCCChHHHHHhhchhHHH
Q 000113 164 QVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWL--------------GHPETRFTFDHIACEMISQEKLFRVAGLPMVE 229 (2159)
Q Consensus 164 rV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~--------------g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~ 229 (2159)
+.+|++.|.-+.+...+|...++..++...+..+ ..| .-+|+-|-|-+..=++|.+.+..|+..
T Consensus 96 ~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~P--dvtY~dIGGL~~Qi~EirE~VELPL~~ 173 (406)
T COG1222 96 KFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKP--DVTYEDIGGLDEQIQEIREVVELPLKN 173 (406)
T ss_pred eEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCC--CCChhhccCHHHHHHHHHHHhcccccC
Confidence 4566666665555555555555543332222111 112 245666666554447888888888764
Q ss_pred H-hhc--CCC--ceeEeecccCCCcce
Q 000113 230 N-CLS--GYN--SCMFAYGQTGSGKTY 251 (2159)
Q Consensus 230 ~-vLe--GyN--~TIFAYGQTGSGKTY 251 (2159)
- .|. |.. -.|+-||+.|+|||-
T Consensus 174 PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 174 PELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred HHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 3 333 442 458999999999974
No 227
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=64.36 E-value=47 Score=36.86 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=65.0
Q ss_pred HhHHHHHHHHHHHHhhhcchhHHHhhhhhhhhhccCCCCchhhhHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 000113 1004 CTEWEKATLELTNFLADGSRSLRDASGQIESIVCLFPQFNVEVTENVGRAAKVCIEKDETILLLQKSLEEAQKMVVEMKE 1083 (2159)
Q Consensus 1004 ~~ewe~~t~el~~~L~dG~~sl~dAs~qi~~I~~SFP~~~~wIsEhV~~a~r~~iEKE~~I~~Lq~~LEdA~~m~~dme~ 1083 (2159)
..+|+..+.||..- |--.+.||+-++.|+|-....-.+|+.++.+--.|-+..=.+|+..+++|.....-++.
T Consensus 64 ~~~~~~~~~elA~d-------Ii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 64 PEEFEENIKELATD-------IIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777665 78899999999999999999899999999998888888888888888888888888877
Q ss_pred HHhhhh
Q 000113 1084 KCISLK 1089 (2159)
Q Consensus 1084 kL~SLr 1089 (2159)
.|+.+.
T Consensus 137 ~i~~ia 142 (144)
T PF11221_consen 137 LIREIA 142 (144)
T ss_dssp HHHTT-
T ss_pred HHHHHh
Confidence 776653
No 228
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=63.63 E-value=11 Score=48.18 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=19.2
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeec
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.+..+++|.|.. ..++||||||.+..
T Consensus 117 ai~~~~~G~dvi--~~apTGSGKTlay~ 142 (475)
T PRK01297 117 VLGYTLAGHDAI--GRAQTGTGKTAAFL 142 (475)
T ss_pred HHHHHhCCCCEE--EECCCCChHHHHHH
Confidence 345678898754 56699999997753
No 229
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=63.63 E-value=2.5e+02 Score=32.04 Aligned_cols=83 Identities=31% Similarity=0.361 Sum_probs=52.0
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 000113 1707 LRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKI 1786 (2159)
Q Consensus 1707 ~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~ 1786 (2159)
+..+-.+.......+..++++|..+..+|+.+......|+.+.+--. .-++ -.+-+...++|..
T Consensus 93 ~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~-----~P~l-----------l~Dy~~~~~~~~~ 156 (177)
T PF13870_consen 93 LERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLG-----VPAL-----------LRDYDKTKEEVEE 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CcHH-----------HHHHHHHHHHHHH
Confidence 33334446666666777788888888888888877777766554311 0111 0123455667777
Q ss_pred HHHhHHHHHhHHHHHHhHh
Q 000113 1787 LEHSIEELEHTVNALEKKV 1805 (2159)
Q Consensus 1787 le~sveele~tin~LE~kV 1805 (2159)
|+.+|..|+.++.+|+.+|
T Consensus 157 l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 157 LRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 7777777777777777654
No 230
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=63.46 E-value=3.7 Score=49.07 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=22.0
Q ss_pred HHHhhcCCCceeEeecccCCCcceeecc
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
+..++..-.+.|+-.|.||||||.||..
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 4555555567789999999999999853
No 231
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=62.84 E-value=2.7 Score=50.27 Aligned_cols=129 Identities=19% Similarity=0.277 Sum_probs=72.2
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcCCCce-eEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHH
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSC-MFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRI 282 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~T-IFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I 282 (2159)
..+|...+-+...+.+.+.+ ..++.|..+. ++-||..|||||.++-+- ....
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVkal----------------------l~~y 76 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKAL----------------------LNEY 76 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHHH----------------------HHHH
Confidence 55666666665555555544 6788887654 677999999999887442 1111
Q ss_pred HHHHhhhccccceEEEEEeeeeeecccccccCCCCCCCceeeecCCCCEEEeCcEEEEe-CCHHHHHHHHHhhhcccccc
Q 000113 283 RMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTEYNV-KTVNDVVKLLLQGAANRKMA 361 (2159)
Q Consensus 283 ~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p~s~~L~IrED~k~Gv~VkgLTEv~V-sS~eE~l~LL~~G~~nR~vA 361 (2159)
. +.+ +-.+||..+.+.||-.--. .+. ..+.+--+|+.+|+--.- .++..+..+|.-|... ...
T Consensus 77 ~-------~~G------LRlIev~k~~L~~l~~l~~-~l~-~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~-~P~ 140 (249)
T PF05673_consen 77 A-------DQG------LRLIEVSKEDLGDLPELLD-LLR-DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEA-RPD 140 (249)
T ss_pred h-------hcC------ceEEEECHHHhccHHHHHH-HHh-cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcccc-CCC
Confidence 0 111 3457777776666531100 000 011122356666663222 2355566666655544 355
Q ss_pred cccCCCCCCCceeE
Q 000113 362 ATYMNSESSRSHSV 375 (2159)
Q Consensus 362 sT~mN~~SSRSHsI 375 (2159)
..-+...|.|-|.|
T Consensus 141 NvliyATSNRRHLv 154 (249)
T PF05673_consen 141 NVLIYATSNRRHLV 154 (249)
T ss_pred cEEEEEecchhhcc
Confidence 56667778888855
No 232
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=62.45 E-value=4.1 Score=47.40 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=19.0
Q ss_pred HhhcCCCceeEeecccCCCcceeec
Q 000113 230 NCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 230 ~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
..+....+.++-+|++|||||+++.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344446678889999999998874
No 233
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=61.63 E-value=55 Score=39.22 Aligned_cols=89 Identities=25% Similarity=0.295 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHhhhhhhcch
Q 000113 2034 HVQKLVVAAQQQTQELLAKEQIILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLR-ERDQLLSAQNDMLKMDK 2112 (2159)
Q Consensus 2034 q~~kl~e~a~~~~~e~~~ke~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~-qrdqlL~aqnemLk~e~ 2112 (2159)
++.|+.-.....++.....+.-|..+++..+.|..||.+-.+|+.+=.+|+-.---.+-+++ +|++....= -.|-.|.
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i-~r~~eey 90 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI-QRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 56788888888888899999999999999999999999999999999999988666665554 344433322 3333455
Q ss_pred hhhhhHhhhhH
Q 000113 2113 TNLLKRISELD 2123 (2159)
Q Consensus 2113 ~n~~~ki~eLd 2123 (2159)
..||..|-++-
T Consensus 91 ~~Lk~~in~~R 101 (230)
T PF10146_consen 91 KPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 234
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=61.47 E-value=4.6e+02 Score=34.72 Aligned_cols=89 Identities=28% Similarity=0.372 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHH-------HHHhhhhhhhhhhHHHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQ-------ELEASKLYAEQKEEEVKI 1786 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q-------~ae~~k~yae~keeevk~ 1786 (2159)
+.-+-..+.+++..|-+-.+|++-|+-|+-+++--. ..-.|. -..|-+| -.|-.|+.- +|||||.-
T Consensus 392 lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~ny----v~LQEr--y~~eiQqKnksvsqclEmdk~Ls-kKeeever 464 (527)
T PF15066_consen 392 LQNLQEALANTQKHLQESRNEKETLQLELKKIKANY----VHLQER--YMTEIQQKNKSVSQCLEMDKTLS-KKEEEVER 464 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhH----HHHHHH--HHHHHHHhhhHHHHHHHHHHHhh-hhHHHHHH
Confidence 455667788899999999999999999998776532 222222 2223333 344444443 79999999
Q ss_pred HHHhHHHHHhHH-HHHHhHhhhhhhhHH
Q 000113 1787 LEHSIEELEHTV-NALEKKVYEMNGEVE 1813 (2159)
Q Consensus 1787 le~sveele~ti-n~LE~kV~~~k~e~~ 1813 (2159)
|-+--.|||... -+|+ -+|+|-+
T Consensus 465 LQ~lkgelEkat~SALd----lLkrEKe 488 (527)
T PF15066_consen 465 LQQLKGELEKATTSALD----LLKREKE 488 (527)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 999999999654 5665 3555533
No 235
>PRK04406 hypothetical protein; Provisional
Probab=61.12 E-value=30 Score=34.88 Aligned_cols=53 Identities=17% Similarity=0.347 Sum_probs=49.2
Q ss_pred HHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccc
Q 000113 1786 ILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQN 1838 (2159)
Q Consensus 1786 ~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n 1838 (2159)
-+|..+.+||..+--+|.-|..|++.|-+|+-.=+.|..+++.|++++..+..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 48889999999999999999999999999999999999999999999988763
No 236
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=61.05 E-value=4.7 Score=42.89 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=16.3
Q ss_pred ceeEeecccCCCcceeeccc
Q 000113 237 SCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G~ 256 (2159)
..++-.|+||||||+++...
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~ 44 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLP 44 (201)
T ss_pred CcEEEECCCCCchhHHHHHH
Confidence 45677889999999988664
No 237
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=61.00 E-value=7.7e+02 Score=36.18 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=42.1
Q ss_pred hHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHH
Q 000113 1790 SIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQ 1869 (2159)
Q Consensus 1790 sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~ 1869 (2159)
-++-|+.|.+.|+ +....+..++.++-.=+....++..+++++.+-.... .......+.+++...+......|+
T Consensus 46 ~~~~l~~tl~~l~-~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~-----~~~~~~~s~~~Leq~l~~~~~~L~ 119 (1109)
T PRK10929 46 IVEALQSALNWLE-ERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEP-----RSVPPNMSTDALEQEILQVSSQLL 119 (1109)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc-----ccccccCCHHHHHHHHHHHHHHHH
Confidence 3566777777776 4455555555555555555666777777766533221 111122234556665554444444
Q ss_pred HHHHHHH
Q 000113 1870 EAHHRIQ 1876 (2159)
Q Consensus 1870 ~a~~~i~ 1876 (2159)
++++...
T Consensus 120 ~~q~~l~ 126 (1109)
T PRK10929 120 EKSRQAQ 126 (1109)
T ss_pred HHHHHHH
Confidence 4444433
No 238
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=60.89 E-value=2.5e+02 Score=35.06 Aligned_cols=19 Identities=11% Similarity=0.218 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 000113 1909 QYQQKYKTLEAMIREMQTN 1927 (2159)
Q Consensus 1909 ~y~~k~k~lEaM~~~~k~~ 1927 (2159)
..++....+++-....+..
T Consensus 250 ~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 250 EAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555444444433
No 239
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=60.56 E-value=4.3e+02 Score=35.16 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=22.1
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHH
Q 000113 1741 EICSLNDKLAMAYALADENEAIAVEARQE 1769 (2159)
Q Consensus 1741 e~~~l~~kle~a~a~a~e~eaia~ea~q~ 1769 (2159)
++-.+...++++.++.+-.++.-.+=++.
T Consensus 215 ~~~e~~~~l~l~~~~~~~~~~el~~Yk~k 243 (511)
T PF09787_consen 215 ESGELQEQLELLKAEGESEEAELQQYKQK 243 (511)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55566778889998888888877776654
No 240
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=60.48 E-value=1e+02 Score=34.42 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=59.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000113 1854 EDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIRE 1923 (2159)
Q Consensus 1854 ~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~ 1923 (2159)
.+.+-+.-..-+..|..+.+.|..|+.|+...........++|.+|.=-+.++.+++.+..+.+.++.+.
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~ 91 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL 91 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 3444555555577788999999999999999999999999999999999999999999998887666663
No 241
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=59.54 E-value=3.8 Score=49.95 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=21.5
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.++..++.+ .+.|+-.|.||||||.+|-
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 455556654 5678899999999999973
No 242
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=58.85 E-value=48 Score=38.20 Aligned_cols=94 Identities=22% Similarity=0.261 Sum_probs=44.0
Q ss_pred HhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhh
Q 000113 1622 QHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVE 1701 (2159)
Q Consensus 1622 ~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~ 1701 (2159)
.+.-|-.+|.+....+...+..+......=.+|+..+..+-.+....+++|.++.+.++-|=+|++-|+-.
T Consensus 89 ~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~--------- 159 (194)
T PF08614_consen 89 SKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQ--------- 159 (194)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred ccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 34444444444444444444444444444444555555555555566777888888887777777744433
Q ss_pred hhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 000113 1702 SIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEIC 1743 (2159)
Q Consensus 1702 ~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~ 1743 (2159)
+..+++.+.++..|.+.|-.-..
T Consensus 160 -------------------~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 160 -------------------LNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777765443
No 243
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=58.78 E-value=4 Score=47.69 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.0
Q ss_pred CCceeEeecccCCCcceeecc
Q 000113 235 YNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYTM~G 255 (2159)
.++.++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 678888899999999999965
No 244
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=58.35 E-value=4e+02 Score=32.13 Aligned_cols=119 Identities=24% Similarity=0.192 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEE 1793 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~svee 1793 (2159)
...+.-.|.+.+++|.++....-++-..-..+..+++.+.+.++.-|--|..|=+..+ --.|.+-=+++.-||.-++.
T Consensus 26 ~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr~al~~~~~le~~~~~ 103 (225)
T COG1842 26 EKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLAREALEEKQSLEDLAKA 103 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHH
Confidence 3445566889999999999999999999999999999999999999999888887666 45777778889999999999
Q ss_pred HHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhh
Q 000113 1794 LEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLS 1834 (2159)
Q Consensus 1794 le~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~ 1834 (2159)
++..+..+...|..|+..+.+-...=..++.....++.+-.
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 104 LEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888777766677777776665544
No 245
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=57.96 E-value=5.8 Score=47.62 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=27.3
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
-+||.+.+ |..+...+ ...+-.|....++-||++|||||++...
T Consensus 12 ~~~~~~~g----~~~~~~~L----~~~~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 12 ALLEDILG----QDEVVERL----SRAVDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred CcHHHhcC----CHHHHHHH----HHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 35676664 55554332 2222234434688899999999999844
No 246
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=57.93 E-value=3.5 Score=46.56 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=14.0
Q ss_pred eeEeecccCCCcceeecc
Q 000113 238 CMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~G 255 (2159)
.++.+|+||||||+++..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 689999999999999854
No 247
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.73 E-value=7.3 Score=49.38 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.6
Q ss_pred CceeEeecccCCCcceeec
Q 000113 236 NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~ 254 (2159)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999999983
No 248
>PTZ00424 helicase 45; Provisional
Probab=57.64 E-value=4.7 Score=49.71 Aligned_cols=26 Identities=35% Similarity=0.639 Sum_probs=19.7
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeec
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.+..+++|.|. +..++||||||.+..
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~~ 83 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATFV 83 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHHH
Confidence 34556788875 467899999998764
No 249
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=57.42 E-value=4.7 Score=44.84 Aligned_cols=28 Identities=36% Similarity=0.471 Sum_probs=20.5
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeec
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
+...+-.|.+.+++-||+.|+|||+.|.
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 3333445668999999999999999874
No 250
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=57.42 E-value=3.2 Score=50.02 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=14.6
Q ss_pred eeEeecccCCCcceeecc
Q 000113 238 CMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~G 255 (2159)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 455569999999999854
No 251
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=57.38 E-value=3.7 Score=47.13 Aligned_cols=17 Identities=41% Similarity=0.532 Sum_probs=14.6
Q ss_pred eeEeecccCCCcceeec
Q 000113 238 CMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~ 254 (2159)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46778999999999973
No 252
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=57.26 E-value=4.3 Score=45.11 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=13.5
Q ss_pred eeEeecccCCCcceeecc
Q 000113 238 CMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~G 255 (2159)
..+-.|+.|||||+|+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp -EEEE-STTSSHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 456799999999999754
No 253
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=56.82 E-value=6 Score=49.28 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=27.8
Q ss_pred CChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 214 ISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 214 aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..|..||+.+...+. ......+|--|+-|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 468999988855443 344567899999999999987
No 254
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=56.74 E-value=23 Score=47.84 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=4.1
Q ss_pred ChHHHHHhh
Q 000113 215 SQEKLFRVA 223 (2159)
Q Consensus 215 SQEeVFe~v 223 (2159)
+|.++|...
T Consensus 654 en~dlfakL 662 (1102)
T KOG1924|consen 654 ENDDLFAKL 662 (1102)
T ss_pred cchHHHHHH
Confidence 344555443
No 255
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=56.73 E-value=20 Score=46.71 Aligned_cols=10 Identities=20% Similarity=0.079 Sum_probs=6.8
Q ss_pred CCcceeeccc
Q 000113 247 SGKTYTMMGE 256 (2159)
Q Consensus 247 SGKTYTM~G~ 256 (2159)
||-|||+.-+
T Consensus 211 s~~t~~~~qp 220 (655)
T KOG4343|consen 211 SQPTVVQLQP 220 (655)
T ss_pred CCCceEEEec
Confidence 4558888765
No 256
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=56.56 E-value=3.4e+02 Score=30.72 Aligned_cols=36 Identities=31% Similarity=0.134 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 000113 1657 LLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSE 1692 (2159)
Q Consensus 1657 ~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~ 1692 (2159)
-|+..-..+..+.-+.+-.+++|++|+.+|-.||+.
T Consensus 32 eLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~e 67 (140)
T PF10473_consen 32 ELEMSQENKECLILDAENSKAEIETLEEELEELTSE 67 (140)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555566667777777777666665
No 257
>PF13479 AAA_24: AAA domain
Probab=56.24 E-value=4.6 Score=46.52 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=16.9
Q ss_pred CceeEeecccCCCcceeeccc
Q 000113 236 NSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~G~ 256 (2159)
+..++-||++|+|||++...-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 346889999999999987553
No 258
>PF13166 AAA_13: AAA domain
Probab=56.22 E-value=6.8e+02 Score=34.10 Aligned_cols=46 Identities=17% Similarity=0.415 Sum_probs=24.2
Q ss_pred HHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHH
Q 000113 1784 VKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQAL 1829 (2159)
Q Consensus 1784 vk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~ 1829 (2159)
+.-++..+..++..+..+++++..+..++....-..+.+-.+|+.+
T Consensus 426 i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 426 INSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444444444555555555555555545444445555666666666
No 259
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=56.16 E-value=4.3 Score=41.55 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=14.0
Q ss_pred eeEeecccCCCcceee
Q 000113 238 CMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM 253 (2159)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999875
No 260
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=55.57 E-value=2e+02 Score=34.77 Aligned_cols=117 Identities=30% Similarity=0.347 Sum_probs=75.6
Q ss_pred hhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhh
Q 000113 1780 KEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSR 1859 (2159)
Q Consensus 1780 keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r 1859 (2159)
-+++.+.-.....+-+.|+..|+.+.....+|+++-.--+..++.+.+.|+.....-. .-+.
T Consensus 17 ~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~------------------eEk~ 78 (246)
T PF00769_consen 17 MEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQE------------------EEKE 78 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH
Confidence 3455666666667777788888888888877777766666777777777764221110 1123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000113 1860 KLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIRE 1923 (2159)
Q Consensus 1860 ~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~ 1923 (2159)
.| ...+.++...|..|..+...++.|..+++.-+. +||..+=..|.+-++.|...
T Consensus 79 ~L---e~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~------~ar~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 79 QL---EQELREAEAEIARLEEESERKEEEAEELQEELE------EAREDEEEAKEELLEVMSAP 133 (246)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HTT
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhcc
Confidence 34 445678888999999999999999999987543 56666667777777777764
No 261
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=55.46 E-value=4.3e+02 Score=31.60 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcchhHHHhhhhhhhhhccCCCCchh
Q 000113 966 EEVASLQLELHENLCCMTEENTCLRNTIAAKEEEIRSRCTEWEKATLELTNFLADGSRSLRDASGQIESIVCLFPQFNVE 1045 (2159)
Q Consensus 966 eel~~lq~e~~~~~~~~~~e~~~L~~~~~~ke~Ei~~l~~ewe~~t~el~~~L~dG~~sl~dAs~qi~~I~~SFP~~~~w 1045 (2159)
.+...|...+.+.. ..|..++.++.+-+.-|..+-++|++-.-....=+...-.--+.|...+.++-.||. +
T Consensus 23 ~e~~~l~~k~~e~~----~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs----d 94 (207)
T PF05010_consen 23 EEEQELKKKYEELH----KENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS----D 94 (207)
T ss_pred HHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH----H
Confidence 44445554444444 778888899999999999999999777554444444444556778888888888887 4
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHH-----HhhHhhhhcccchhhhHHHhhhhHHHH
Q 000113 1046 VTENVGRAAKVCIEKDETILLLQKSLEEAQKMVVEMKEKCISLKGATI-----ALNEIQHLGNEECTDEAIHLSMTLNKK 1120 (2159)
Q Consensus 1046 IsEhV~~a~r~~iEKE~~I~~Lq~~LEdA~~m~~dme~kL~SLrgAtl-----ainE~~q~~~~e~~~e~~~l~~~l~~k 1120 (2159)
+--..++..-++.-=-.--+-|.+|++|....+...+.+...||.=+- |=.|+-+.-. .-..|+..|+..|...
T Consensus 95 l~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~-~~~~e~~aLqa~lkk~ 173 (207)
T PF05010_consen 95 LHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRS-KHQAELLALQASLKKE 173 (207)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 445566655554443334445679999999999899998888875421 1111111111 1134456666666554
Q ss_pred HHHHHHHHhhhhhhhhH
Q 000113 1121 IEMVKLLESELKSKEDQ 1137 (2159)
Q Consensus 1121 ~~~v~~l~~~lk~ke~~ 1137 (2159)
---|.-|+..|..|.-.
T Consensus 174 e~~~~SLe~~LeQK~kE 190 (207)
T PF05010_consen 174 EMKVQSLEESLEQKTKE 190 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44456666666665543
No 262
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=55.30 E-value=3.5e+02 Score=36.27 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=4.3
Q ss_pred hhhhhhHHhh
Q 000113 1640 AKGTIDTLSD 1649 (2159)
Q Consensus 1640 ~~~~~~~ls~ 1649 (2159)
....+..|..
T Consensus 231 ~~~~~~~L~~ 240 (563)
T TIGR00634 231 SQNALAALRG 240 (563)
T ss_pred HHHHHHHHhC
Confidence 3344444443
No 263
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=55.12 E-value=75 Score=33.18 Aligned_cols=64 Identities=34% Similarity=0.438 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhHHHHHH
Q 000113 578 KTKRLECMLLGSLRREKMAEAVTQKLEAEIEHMNRLLCQREEDTQHTKMMLRFREEKIKQLELLVNGSVTAEKYLMDENI 657 (2159)
Q Consensus 578 k~k~lE~~L~~alrre~~~E~e~~kleeeie~ln~Ll~qkee~~q~sk~~lklree~i~~lE~l~s~~l~~E~~L~~En~ 657 (2159)
+++.||..+.+++..+.-...+...|.++|+-|...+.. .++.++.. .||.
T Consensus 4 kI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~---nPevtr~A--------------------------~EN~ 54 (86)
T PF12711_consen 4 KIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEH---NPEVTRFA--------------------------MENI 54 (86)
T ss_pred HHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHh---CHHHHHHH--------------------------HHHH
Confidence 677888888777776666667778899999888777743 36655533 3466
Q ss_pred HHHHHHHHHHHhh
Q 000113 658 ALKEEIQLLQARI 670 (2159)
Q Consensus 658 ~lk~Ei~~Lq~~~ 670 (2159)
+|+++++-|+.-+
T Consensus 55 rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 55 RLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666665
No 264
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=55.07 E-value=1.1e+02 Score=40.18 Aligned_cols=192 Identities=20% Similarity=0.216 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHH--HHhhhhhhhhhhHHHHHHHHhHHHH
Q 000113 1717 LCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQE--LEASKLYAEQKEEEVKILEHSIEEL 1794 (2159)
Q Consensus 1717 ~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~--ae~~k~yae~keeevk~le~sveel 1794 (2159)
+-.-+++|++.+++.-+.=-||.-|++.-.+-|.---+.++|.||..+=.+=- .+++-++-- +-..-|-.-...|
T Consensus 95 Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~---~~~EaL~ekLk~~ 171 (596)
T KOG4360|consen 95 LQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQR---ELLEALQEKLKPL 171 (596)
T ss_pred hhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHH---HHHHHHHhhcCCh
Confidence 44456788888888888888888887765555555556677888887755433 554444433 2222344455667
Q ss_pred HhHHHHHHhHhhhhhhhH-----HhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHH
Q 000113 1795 EHTVNALEKKVYEMNGEV-----ERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQ 1869 (2159)
Q Consensus 1795 e~tin~LE~kV~~~k~e~-----~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~ 1869 (2159)
|..+.+|--||+-+|-|- .-+.++-+ +..+|.....+|. -+..-+..+..++.
T Consensus 172 ~een~~lr~k~~llk~Et~~~~~keq~~y~~-~~KelrdtN~q~~---------------------s~~eel~~kt~el~ 229 (596)
T KOG4360|consen 172 EEENTQLRSKAMLLKTETLTYEEKEQQLYGD-CVKELRDTNTQAR---------------------SGQEELQSKTKELS 229 (596)
T ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHH-HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence 777778887887777653 33333322 1222222221111 11234566677777
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhh----------HHHHHHHHHHHHHHHHHHHHhhcCC--CCccc
Q 000113 1870 EAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHS----------EAQASQYQQKYKTLEAMIREMQTNL--SNTTA 1933 (2159)
Q Consensus 1870 ~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~----------eaqa~~y~~k~k~lEaM~~~~k~~~--~~~~~ 1933 (2159)
.-++.+-.|...+..++++|+-|.----|+..|- +|--.+-+.||.++++|.++-..+. .|+..
T Consensus 230 ~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~ 305 (596)
T KOG4360|consen 230 RQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCD 305 (596)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 7778888888888888888877766666666653 2333578899999999998776654 44443
No 265
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=54.82 E-value=6.7 Score=43.66 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=17.3
Q ss_pred HHhhcCCCceeEeecccCCCcceee
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+.++.|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 34445776 678889999999874
No 266
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=54.81 E-value=1.3e+02 Score=33.13 Aligned_cols=48 Identities=25% Similarity=0.330 Sum_probs=41.2
Q ss_pred hHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcc
Q 000113 1790 SIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1790 sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
-||-|-++|.-+|.++..++.|+.|-.-.|+.+..|+=++-.+...+.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999877765544443
No 267
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=54.81 E-value=4.6 Score=41.30 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=13.2
Q ss_pred eEeecccCCCcceee
Q 000113 239 MFAYGQTGSGKTYTM 253 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM 253 (2159)
|+=||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 567999999999986
No 268
>PRK02793 phi X174 lysis protein; Provisional
Probab=54.64 E-value=46 Score=33.30 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=48.7
Q ss_pred HHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccc
Q 000113 1787 LEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQN 1838 (2159)
Q Consensus 1787 le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n 1838 (2159)
+|.-+.+||..|--.|.=|..|++.|-+|+..=+.|..+++.|++++..++.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7788999999999999999999999999999999999999999999988874
No 269
>PRK00295 hypothetical protein; Provisional
Probab=54.50 E-value=45 Score=33.01 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=46.8
Q ss_pred HHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcc
Q 000113 1787 LEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1787 le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
+|.-|.+||..+--+|.-|..|++.|-+|+-.=+.|+.+++.|++|+..+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455699999999999999999999999999999999999999999998876
No 270
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=54.43 E-value=2.3e+02 Score=38.16 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=25.2
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHH
Q 000113 1587 NKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKL 1626 (2159)
Q Consensus 1587 n~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~L 1626 (2159)
+.+.++.+++-|-+.++.++ ++..+.++.+.+...++.|
T Consensus 179 ~~~e~~~~~d~L~fq~~Ele-~~~l~~gE~e~L~~e~~rL 217 (557)
T COG0497 179 KERERAQRADLLQFQLEELE-ELNLQPGEDEELEEERKRL 217 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHH
Confidence 34467777777777777775 4666777666665555444
No 271
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.31 E-value=8 Score=48.99 Aligned_cols=47 Identities=26% Similarity=0.407 Sum_probs=35.0
Q ss_pred eEeceecCCCCChHHHHHhhchhH-HHHhhcCCCc---eeEeecccCCCcc
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPM-VENCLSGYNS---CMFAYGQTGSGKT 250 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PL-V~~vLeGyN~---TIFAYGQTGSGKT 250 (2159)
...|-|.|-.---+-+-+.|+.|+ +..+|.|.-. .|+-.|+.|||||
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKT 259 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHH
Confidence 556777765544445667788886 6888998743 5889999999997
No 272
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.11 E-value=7.7 Score=47.08 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=27.0
Q ss_pred HHhhch-hHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 220 FRVAGL-PMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 220 Fe~v~~-PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
|+.... |+++++.----|.|+-.|.|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 444444 46677776778889999999999999984
No 273
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.03 E-value=39 Score=40.09 Aligned_cols=73 Identities=25% Similarity=0.261 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhHHHHH
Q 000113 2055 IILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISELDDMVK 2127 (2159)
Q Consensus 2055 e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd~~vk 2127 (2159)
-...+|..++++++|.+-+++|+..+++++-+.|-.++.|+----.|.-.-..|-.|-..|++|..||++.|.
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 3556888899999999999999999999999999999999887777765555555688999999999997654
No 274
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=53.68 E-value=11 Score=40.12 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=33.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhh
Q 000113 1712 SDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQK 1780 (2159)
Q Consensus 1712 ~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~k 1780 (2159)
-|..++-+++..|.+++..+..+++.|..++..|+.+|.-+...-+.-....+.|++.++--+..|+..
T Consensus 18 Yd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~e 86 (131)
T PF05103_consen 18 YDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEE 86 (131)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 467888999999999999999999999999999999988775544444444456666665555555443
No 275
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=53.45 E-value=42 Score=38.72 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=39.4
Q ss_pred chhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhcc
Q 000113 1632 DTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVT 1711 (2159)
Q Consensus 1632 d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~ 1711 (2159)
+....+...++.+..+-..+.++-..|-++-.+....+..+.++..-|..|+.++-.|..-
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~------------------- 131 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEK------------------- 131 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHH-------------------
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3344444466777778888888888888888888888888888888888888888877766
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHH
Q 000113 1712 SDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAY 1753 (2159)
Q Consensus 1712 ~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~ 1753 (2159)
...+...|+..+..+..+.||=.-|+-+.-.+.+|+....
T Consensus 132 --~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 132 --IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666666666666665544
No 276
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=53.42 E-value=5.5e+02 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=12.7
Q ss_pred HHHHHHHhhhhhhhHHHHHhhHHHHHHHH
Q 000113 1725 EEELRKVSKERDKLWVEICSLNDKLAMAY 1753 (2159)
Q Consensus 1725 ~~~l~~~~~Erd~l~~e~~~l~~kle~a~ 1753 (2159)
...+..+..++.+++.++..++..++...
T Consensus 136 ~~~~~~~~~~~~~l~~~i~~~~~~i~~~~ 164 (423)
T TIGR01843 136 ESRKSTLRAQLELILAQIKQLEAELAGLQ 164 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 277
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=53.28 E-value=22 Score=48.36 Aligned_cols=58 Identities=26% Similarity=0.422 Sum_probs=33.8
Q ss_pred Hhhh-hHHHHHHHHHHHHHHHHHHHhh----------cccccccccchhhhhhHHHHHHHHhhhhHHHHHH
Q 000113 696 FYEQ-GEREKLLAELAELRDQLLDIVE----------GKERFSSRHENQENDTTTELENCRNMNSKLMREV 755 (2159)
Q Consensus 696 f~~~-gere~l~~ei~~Lr~ql~~~~~----------~~~~~~~~~~~~~~~~~~~~~~c~~~~~~l~r~~ 755 (2159)
|+.. |=|...+.|+..||.||...+. |.+.+++....|+.-+++-+ |-..-..+.|-+
T Consensus 891 fc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i--~Ag~~DrVArk~ 959 (1172)
T KOG0926|consen 891 FCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMI--CAGFADRVARKV 959 (1172)
T ss_pred hHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHH--HHHHHHHHHHhc
Confidence 6644 7777778888888888766655 33444444445555444443 444445555544
No 278
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=53.02 E-value=13 Score=44.94 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=46.3
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhc---CC--CceeEeecccCCCcceeeccccccc-------cC--CCCCCCC
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLS---GY--NSCMFAYGQTGSGKTYTMMGEINEV-------EG--KLNDDCG 269 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLe---Gy--N~TIFAYGQTGSGKTYTM~G~~~~~-------~g--~~~e~~G 269 (2159)
.+|..|-+-+..-++|-+.+-.|+...=+- |. --.|+-||+.|+|||.-.-.-.+.. .| ....-.|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 455666666666667777777777665542 33 2358999999999974321111000 00 0011235
Q ss_pred ChhHHHHHHHHHH
Q 000113 270 ITPRIFEYLFSRI 282 (2159)
Q Consensus 270 IIPRale~LF~~I 282 (2159)
=-||.++++|...
T Consensus 232 egprmvrdvfrla 244 (408)
T KOG0727|consen 232 EGPRMVRDVFRLA 244 (408)
T ss_pred cCcHHHHHHHHHH
Confidence 6688888888653
No 279
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=53.00 E-value=6.5 Score=48.71 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=20.4
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.++..++.+ .+.|+-.|.||||||.+|-
T Consensus 135 ~~L~~~v~~-~~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDS-RLNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 445555543 3468899999999999983
No 280
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=52.49 E-value=7.3e+02 Score=33.34 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=23.0
Q ss_pred HHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHH
Q 000113 1619 LLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLK 1664 (2159)
Q Consensus 1619 ~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~ 1664 (2159)
++...+.+-..+.+....|...+.....+..+...|+-+|+++-..
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~ 204 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA 204 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 3334444444444444444444444455555555666666655443
No 281
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=52.38 E-value=4.6e+02 Score=30.98 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=82.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhH
Q 000113 1660 DLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLW 1739 (2159)
Q Consensus 1660 ~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~ 1739 (2159)
-.+..-..++.=|.=|.-|++.||.|+-+.... ......++..-+.+++-...-.++.+
T Consensus 50 kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~v---------------------V~ee~~sL~~aq~na~aA~~aa~~A~ 108 (188)
T PF05335_consen 50 KAAQAAKAAEAALAGKQQIVEQLEQEVREAEAV---------------------VQEEKASLQQAQANAQAAQRAAQQAQ 108 (188)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555678899999999999999999998888 57777888999999999999999999
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 000113 1740 VEICSLNDKLAMAYALADENEAIAVEARQELEA 1772 (2159)
Q Consensus 1740 ~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~ 1772 (2159)
.++..|+.-|..+..-.+--+..+..|++....
T Consensus 109 ~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 109 QQLETLKAALKAAQANLANAEQVAEGAQQELAE 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754
No 282
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=52.19 E-value=8.1 Score=45.13 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=15.0
Q ss_pred CCceeEeecccCCCcceeecc
Q 000113 235 YNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYTM~G 255 (2159)
.+-.+++.|+.||||||.-..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a 38 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALA 38 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHH
T ss_pred hCCeEEEECCCCCcHHHHHHH
Confidence 556899999999999987644
No 283
>PHA00729 NTP-binding motif containing protein
Probab=51.91 E-value=8.4 Score=45.69 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=23.8
Q ss_pred chhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 224 GLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 224 ~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
++-++..+..|--..|+-+|.+|+||||-...
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 45566666654445899999999999987644
No 284
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=51.76 E-value=81 Score=37.89 Aligned_cols=90 Identities=24% Similarity=0.312 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHH
Q 000113 1653 DLRVLLKDLYLKKSEA---EEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELR 1729 (2159)
Q Consensus 1653 eLr~~l~~~~~~k~~~---e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~ 1729 (2159)
+||.++.++...+..+ -+.++...+.|+-+.+|+-.|..- -.+.+++||.+--|...|.+.|+..+++-+
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~E-------r~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQE-------RMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655555544443 444556667888888888888777 567788999999998888888888887777
Q ss_pred HHhhhhhhhHHHHHhhHHHH
Q 000113 1730 KVSKERDKLWVEICSLNDKL 1749 (2159)
Q Consensus 1730 ~~~~Erd~l~~e~~~l~~kl 1749 (2159)
+..+.=.++++|+..|++..
T Consensus 78 ~~~~~i~r~~eey~~Lk~~i 97 (230)
T PF10146_consen 78 KRQEKIQRLYEEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77776677777777776654
No 285
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=51.61 E-value=7.6 Score=49.35 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=18.2
Q ss_pred HHhhcCCCceeEeecccCCCcceee
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..+++|.| +++.+|||||||.+.
T Consensus 36 ~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 36 PAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHhcCCC--EEEECCCCCcHHHHH
Confidence 44567877 788889999999764
No 286
>PRK10536 hypothetical protein; Provisional
Probab=51.52 E-value=7.6 Score=46.98 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=29.6
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
|.|-.|-+-+..|...... +.+ +.-||..|++||||||...
T Consensus 52 ~~~~~i~p~n~~Q~~~l~a--------l~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKA--------IES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred cCCccccCCCHHHHHHHHH--------Hhc--CCeEEEECCCCCCHHHHHH
Confidence 6677777777777665442 223 3589999999999998763
No 287
>PLN03188 kinesin-12 family protein; Provisional
Probab=51.47 E-value=7.9e+02 Score=36.35 Aligned_cols=142 Identities=30% Similarity=0.376 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHH--------------HHHhHhhhhhhhHHhhhhhHh--------
Q 000113 1763 AVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVN--------------ALEKKVYEMNGEVERHHLIRD-------- 1820 (2159)
Q Consensus 1763 a~ea~q~ae~~k~yae~keeevk~le~sveele~tin--------------~LE~kV~~~k~e~~r~r~~r~-------- 1820 (2159)
+.|.|-++|+++..||.-+-|++.=-+-.|||.-... -||+|-..| .+|||-+++
T Consensus 1067 teelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~l---l~~hr~i~egi~dvkka 1143 (1320)
T PLN03188 1067 AEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQL---LARHRRIQEGIDDVKKA 1143 (1320)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3566889999999999999998877777788765432 233333222 467777776
Q ss_pred ---------------hHHHHHHHHHHh------hhhccccc------cccccccccCCCchhhhhhhHHHHHHHHHHHHH
Q 000113 1821 ---------------SLELEIQALRRR------LSTVQNFS------DIVDSENINAGHTEDQMSRKLQDRLLQLQEAHH 1873 (2159)
Q Consensus 1821 ---------------~le~e~~~~~~~------~~~v~n~~------~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~ 1873 (2159)
.|-+||-+||-+ .+.=+|-+ ++.-.++ ++| .+-=+|++-+.++.-|++
T Consensus 1144 aakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~-aag----ellvrl~eaeea~~~a~~ 1218 (1320)
T PLN03188 1144 AARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQ-AAG----ELLVRLKEAEEALTVAQK 1218 (1320)
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH-HHH----HHHHHHHHHHHHHHHHHH
Confidence 566676666642 22222211 1111122 233 455556666666666666
Q ss_pred HHHHHHHHhhhhHH-----------HHHHHHhhhhhhhhhhHHHHHHHHH
Q 000113 1874 RIQLLEREKEEQNE-----------EIKRCKDYLSEVVLHSEAQASQYQQ 1912 (2159)
Q Consensus 1874 ~i~~l~~~~~~k~~-----------ei~q~k~~isel~lh~eaqa~~y~~ 1912 (2159)
+--..+.|..+..+ ||--+|.|.+|=-|+.+|..-.|.+
T Consensus 1219 r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~aes~l~~~~~~~~~~~ 1268 (1320)
T PLN03188 1219 RAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAESRLPKEAIRPACND 1268 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCccccc
Confidence 66555555555444 4555555566666666665445544
No 288
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.16 E-value=7.7 Score=49.00 Aligned_cols=38 Identities=34% Similarity=0.476 Sum_probs=24.4
Q ss_pred ChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 215 SQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 215 SQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.|+.+... ..++...+-.|.-.+++-||++|+|||++.
T Consensus 16 Gq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 16 GQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred CcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 45555433 233444444565556777999999999876
No 289
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=51.09 E-value=9.9 Score=45.43 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=26.6
Q ss_pred cCCCCChHHHHHhhchhHHHHhhc--CCCceeEeecccCCCcceeec
Q 000113 210 ACEMISQEKLFRVAGLPMVENCLS--GYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 210 Fde~aSQEeVFe~v~~PLV~~vLe--GyN~TIFAYGQTGSGKTYTM~ 254 (2159)
|+.-+.|+++.+.+. .++..... |....++-||++|+|||+...
T Consensus 3 ~~~~iG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQ-LFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHHHcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 344556777776643 23332222 222346679999999998763
No 290
>PRK13764 ATPase; Provisional
Probab=51.08 E-value=6.9 Score=52.07 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=18.4
Q ss_pred CCCceeEeecccCCCcceeecc
Q 000113 234 GYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.....|+-.|+||||||+|+..
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHH
Confidence 4456699999999999999855
No 291
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=51.04 E-value=5e+02 Score=31.03 Aligned_cols=76 Identities=30% Similarity=0.393 Sum_probs=54.7
Q ss_pred hhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 000113 1702 SIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKE 1781 (2159)
Q Consensus 1702 ~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~ke 1781 (2159)
.+.+|+|++.++.+.+.-. =.+....+|-...+|..|.+||--|--=|
T Consensus 113 eLeEe~~~~~~nlk~l~~~-------ee~~~q~~d~~e~~ik~ltdKLkEaE~rA------------------------- 160 (205)
T KOG1003|consen 113 ELEEDLRILDSNLKSLSAK-------EEKLEQKEEKYEEELKELTDKLKEAETRA------------------------- 160 (205)
T ss_pred HHHHHHHHhHhHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHhhhhhhH-------------------------
Confidence 3567788876666665533 34556677888999999999985432111
Q ss_pred HHHHHHHHhHHHHHhHHHHHHhHhhhhhhhH
Q 000113 1782 EEVKILEHSIEELEHTVNALEKKVYEMNGEV 1812 (2159)
Q Consensus 1782 eevk~le~sveele~tin~LE~kV~~~k~e~ 1812 (2159)
.-.||||--||-+|.-||.+...++++.
T Consensus 161 ---E~aERsVakLeke~DdlE~kl~~~k~ky 188 (205)
T KOG1003|consen 161 ---EFAERRVAKLEKERDDLEEKLEEAKEKY 188 (205)
T ss_pred ---HHHHHHHHHHcccHHHHHHhhHHHHHHH
Confidence 2357899999999999999988888773
No 292
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=50.91 E-value=4.4 Score=43.95 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=13.6
Q ss_pred hhcCCCceeEeecccCCCcceee
Q 000113 231 CLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 231 vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
...|-..+++-+|.+|+|||+.+
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHH
Confidence 34566788999999999999886
No 293
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.66 E-value=9.8e+02 Score=34.27 Aligned_cols=216 Identities=25% Similarity=0.321 Sum_probs=104.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHH
Q 000113 1648 SDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEE 1727 (2159)
Q Consensus 1648 s~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 1727 (2159)
|+.-.+||.++.|+-.+-..+.-.-.|-+.=..-||+==+++.++ . +. ..++|...-+|+.+
T Consensus 223 skte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiqleql-------q-----Ef------kSkim~qqa~Lqre 284 (1243)
T KOG0971|consen 223 SKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQL-------Q-----EF------KSKIMEQQADLQRE 284 (1243)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-------H-----HH------HHHHHHHHHHHHHH
Confidence 333344555555554444444333333333333466655666555 1 11 57888899999998
Q ss_pred HHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhH----HHHHHHHhHHHHHhHHHHHHh
Q 000113 1728 LRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEE----EVKILEHSIEELEHTVNALEK 1803 (2159)
Q Consensus 1728 l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~kee----evk~le~sveele~tin~LE~ 1803 (2159)
|.....|..++++=-- +.|-+|| -.||-.|- +-.-|-.||++-+ ||--|-.-|+|||-
T Consensus 285 l~raR~e~keaqe~ke--~~k~ema-d~ad~iEm--------aTldKEmAEERaesLQ~eve~lkEr~delet------- 346 (1243)
T KOG0971|consen 285 LKRARKEAKEAQEAKE--RYKEEMA-DTADAIEM--------ATLDKEMAEERAESLQQEVEALKERVDELET------- 346 (1243)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 8888777666554211 2222333 13333333 2334556666654 44444445555554
Q ss_pred HhhhhhhhHHhhh--------hhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHH
Q 000113 1804 KVYEMNGEVERHH--------LIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRI 1875 (2159)
Q Consensus 1804 kV~~~k~e~~r~r--------~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i 1875 (2159)
.+.|+|.|.+-.- .+=.-||-.-+.||+-+-..+.... .+..-+
T Consensus 347 dlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA----------------------------~ek~d~ 398 (1243)
T KOG0971|consen 347 DLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSA----------------------------SEKQDH 398 (1243)
T ss_pred HHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcch----------------------------HHHHHH
Confidence 4555666654321 0111233333345544444443221 111222
Q ss_pred HHHHHHhhhhHH---HHHHHHhhhhhhhhhhHHHHHHHHHHHHH---HHHHHHHhhcC
Q 000113 1876 QLLEREKEEQNE---EIKRCKDYLSEVVLHSEAQASQYQQKYKT---LEAMIREMQTN 1927 (2159)
Q Consensus 1876 ~~l~~~~~~k~~---ei~q~k~~isel~lh~eaqa~~y~~k~k~---lEaM~~~~k~~ 1927 (2159)
+.|.++...|.+ |..+.||-+|.=+=-+|++-..+|+..-+ -|+||.++-.-
T Consensus 399 qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdk 456 (1243)
T KOG0971|consen 399 QKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDK 456 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhh
Confidence 233333333332 23445555555555666666666665543 47888876433
No 294
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=50.34 E-value=6.2e+02 Score=31.85 Aligned_cols=161 Identities=20% Similarity=0.326 Sum_probs=0.0
Q ss_pred hhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHH------------hhh------
Q 000113 1581 LQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVI------------AKG------ 1642 (2159)
Q Consensus 1581 LQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~------------~~~------ 1642 (2159)
+.|...-+.-..++.+.|..-|..+-.--+.+--.++.++ .+.-||.+|++..-.-.. .++
T Consensus 123 ~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~-k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~ 201 (309)
T PF09728_consen 123 MEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLL-KQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEA 201 (309)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred -hhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHH
Q 000113 1643 -TIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEV 1721 (2159)
Q Consensus 1643 -~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1721 (2159)
.+..+..+-.+||.+|.-...+-.+.++-|.---+|..+.-.||-.|+.. ++-+-.+-..+-.-.
T Consensus 202 ~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk--------------~kklEKE~~~~k~k~ 267 (309)
T PF09728_consen 202 AQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKK--------------IKKLEKENQTWKSKW 267 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhh
Q 000113 1722 ESVEEELRKVSKERDKLWVEICSLNDKLAMAYALA 1756 (2159)
Q Consensus 1722 ~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a 1756 (2159)
+.-+-.|-++..||-.+..++..++.|+++-.+|.
T Consensus 268 e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~Lc 302 (309)
T PF09728_consen 268 EKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLC 302 (309)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 295
>PRK00736 hypothetical protein; Provisional
Probab=50.34 E-value=58 Score=32.30 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=46.4
Q ss_pred HHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcc
Q 000113 1787 LEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1787 le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
+|..|++||..+--+|.=|..|++.|-+|.-.=+.|..+++.|..|+..++
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355699999999999999999999999999999999999999999998876
No 296
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=50.26 E-value=8.2 Score=43.42 Aligned_cols=28 Identities=25% Similarity=0.295 Sum_probs=20.7
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
+++..++.. ...+.-.|+||||||.+|-
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 555556654 4567788999999999874
No 297
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=50.18 E-value=4.9e+02 Score=31.13 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=29.2
Q ss_pred HHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhh
Q 000113 1782 EEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRL 1833 (2159)
Q Consensus 1782 eevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~ 1833 (2159)
..+..+...+++++..+..|...+..++.+++..|-.-+++...++..+..+
T Consensus 56 ~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 56 LEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666666666665555555555555544333
No 298
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=49.89 E-value=7.4 Score=46.72 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=17.0
Q ss_pred cCC-CceeEeecccCCCcceeecc
Q 000113 233 SGY-NSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 233 eGy-N~TIFAYGQTGSGKTYTM~G 255 (2159)
.|- ...+|=||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 453 34566699999999998743
No 299
>PRK10698 phage shock protein PspA; Provisional
Probab=48.80 E-value=5.5e+02 Score=30.79 Aligned_cols=176 Identities=16% Similarity=0.239 Sum_probs=0.0
Q ss_pred hhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHH
Q 000113 1641 KGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEE 1720 (2159)
Q Consensus 1641 ~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1720 (2159)
+..+..+-+.-.++|.-+-..++.+..++.++++...-+.-++..--.-=.....-|--. -...-......
T Consensus 30 ~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~---------AL~~K~~~~~~ 100 (222)
T PRK10698 30 RLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARA---------ALIEKQKLTDL 100 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---------HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhH----HHHHHHHhHHHHHh
Q 000113 1721 VESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEE----EVKILEHSIEELEH 1796 (2159)
Q Consensus 1721 v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~kee----evk~le~sveele~ 1796 (2159)
+..++..+.....--++|...+..|+.|++.|.+=-+.-=|-+.-|+-.....++.+--.-. ...-+|+-|+++|.
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea 180 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Q ss_pred HHHH--------HHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhh
Q 000113 1797 TVNA--------LEKKVYEMNGEVERHHLIRDSLELEIQALRRRL 1833 (2159)
Q Consensus 1797 tin~--------LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~ 1833 (2159)
...+ |+.+...+.. ....+.||.+||.+|
T Consensus 181 ~aea~~~~~~~~l~~e~~~le~--------~~~ve~ELa~LK~~~ 217 (222)
T PRK10698 181 EAESHGFGKQKSLDQQFAELKA--------DDEISEQLAALKAKM 217 (222)
T ss_pred HHhHhhccCCCCHHHHHHHhhc--------cchHHHHHHHHHHHh
No 300
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.77 E-value=8.4e+02 Score=32.96 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHH--HHHHHHHHH
Q 000113 1874 RIQLLEREKEEQNEEIKRCKDYLSEVVLHSEA--QASQYQQKY 1914 (2159)
Q Consensus 1874 ~i~~l~~~~~~k~~ei~q~k~~isel~lh~ea--qa~~y~~k~ 1914 (2159)
.+..+.+.+..-...|..+.+-..+|+-+|.- ++.+|-.+|
T Consensus 466 nm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRY 508 (560)
T PF06160_consen 466 NMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRY 508 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555555555566666666666555532 445555555
No 301
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=48.70 E-value=6.5 Score=49.02 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=20.0
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
++..++. ..+.|+-.|.||||||.+|-.
T Consensus 154 ~l~~~v~-~~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 154 FLHACVV-GRLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHH-cCCeEEEECCCCccHHHHHHH
Confidence 3444443 345688899999999999854
No 302
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=48.25 E-value=8.3 Score=54.69 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=0.0
Q ss_pred HhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 221 RVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 221 e~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
...+..++..+-.|....++. .+||||||+||.+
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
No 303
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=48.16 E-value=4e+02 Score=33.11 Aligned_cols=135 Identities=21% Similarity=0.364 Sum_probs=85.5
Q ss_pred hhhHHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhcchhHHHHhhhcccccccchhhhhhhHHHHH
Q 000113 1958 CIASVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAESMTHDVIRDLLGVKLDMTNYANLIDQEHVQK 2037 (2159)
Q Consensus 1958 CI~glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eSMTHDVIRdLLGVKldmTnyA~liD~~q~~k 2037 (2159)
||-+|||=|.+--=.+||.++++- + -+++-||=.|+++. .|- .+.+..
T Consensus 130 ~Lc~IIqeLq~t~~~~LS~~dl~e-----~----------------------~~~l~DLesa~vkV-~WL----R~~L~E 177 (269)
T PF05278_consen 130 CLCDIIQELQSTPLKELSESDLKE-----M----------------------IATLKDLESAKVKV-DWL----RSKLEE 177 (269)
T ss_pred HHHHHHHHHhcCcHhhhhHHHHHH-----H----------------------HHHHHHHHHcCcch-HHH----HHHHHH
Confidence 777888877543334666555431 0 13455665555554 233 123444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhh
Q 000113 2038 LVVAAQQQTQELLAKEQIILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLK 2117 (2159)
Q Consensus 2038 l~e~a~~~~~e~~~ke~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ 2117 (2159)
++++.+. .......+.+..+.++.+...-+|=+.+..++++++.++..++..+...+.| -.-|+|+-+.+.+
T Consensus 178 i~Ea~e~-~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~r-------l~~l~~~~~~l~k 249 (269)
T PF05278_consen 178 ILEAKEI-YDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGR-------LGELEMESTRLSK 249 (269)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 5554332 2333344556666777787777888888888888888888888887766665 3456677777777
Q ss_pred HhhhhHHHHHHHhcc
Q 000113 2118 RISELDDMVKMLIGT 2132 (2159)
Q Consensus 2118 ki~eLd~~vk~L~g~ 2132 (2159)
.|.-+.-.|+++.|.
T Consensus 250 ~~~~~~sKV~kf~~~ 264 (269)
T PF05278_consen 250 TIKSIKSKVEKFHGK 264 (269)
T ss_pred HHHHHHHHHHHhcCC
Confidence 777788888888774
No 304
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=48.14 E-value=8.1 Score=48.32 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.0
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceee
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.++..++.++ +.|+-.|-||||||.|+
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 5566666666 88999999999999886
No 305
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=47.86 E-value=5.3e+02 Score=35.75 Aligned_cols=41 Identities=24% Similarity=0.131 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHH
Q 000113 1722 ESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAI 1762 (2159)
Q Consensus 1722 ~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eai 1762 (2159)
+.+++.++.+.++-+.+..++..+..+|++..+-.++.+.-
T Consensus 164 ~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~ 204 (670)
T KOG0239|consen 164 ENSLSLLDLALKESLKLESDLGDLVTELEHVTNSISELESV 204 (670)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334666677777777777777777777777666554443
No 306
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=47.66 E-value=8.9 Score=48.27 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=19.1
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..+++|-| +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667876 899999999999874
No 307
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=47.64 E-value=1.2e+02 Score=37.70 Aligned_cols=84 Identities=24% Similarity=0.340 Sum_probs=49.4
Q ss_pred hhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHH
Q 000113 1640 AKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCE 1719 (2159)
Q Consensus 1640 ~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1719 (2159)
....++.+..|..+|...|+++-....+++.++.+ ||.|.-.+... +.+...
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~-------le~e~~~l~~e---------------------E~~~~~ 99 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEE-------LEEELEELDEE---------------------EEEYWR 99 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---------------------HHHHHH
Confidence 34455555556666666666555555555544443 44444444433 445555
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHH
Q 000113 1720 EVESVEEELRKVSKERDKLWVEICSLNDKLAM 1751 (2159)
Q Consensus 1720 ~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~ 1751 (2159)
..-.++-++....+||+.+...+....++|+.
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777777777777777776666654
No 308
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=47.05 E-value=6.9 Score=49.00 Aligned_cols=45 Identities=24% Similarity=0.382 Sum_probs=31.2
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.|.|+.|-| |+++=. -++..+.+-.-+.|+-+|.+||||||++-+
T Consensus 13 ~~pf~~ivG----q~~~k~----al~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 13 VFPFTAIVG----QEEMKL----ALILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCHHHHhC----hHHHHH----HHHHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 488888875 555443 344444444445688999999999998743
No 309
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=46.68 E-value=7.5 Score=43.81 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.9
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
+.++=+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999975
No 310
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.34 E-value=5.3e+02 Score=32.52 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=18.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHh
Q 000113 1590 DIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQH 1623 (2159)
Q Consensus 1590 D~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~ 1623 (2159)
++|+.+++-+..|.+=..-|..+...+++++-.-
T Consensus 144 gLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l 177 (312)
T smart00787 144 GLKEGLDENLEGLKEDYKLLMKELELLNSIKPKL 177 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655555555555555555555544433
No 311
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=46.11 E-value=9.7 Score=47.24 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=20.3
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.++..++.+ -+.|+-.|.||||||.+|-.
T Consensus 151 ~~L~~~v~~-~~nili~G~tgSGKTTll~a 179 (332)
T PRK13900 151 EFLEHAVIS-KKNIIISGGTSTGKTTFTNA 179 (332)
T ss_pred HHHHHHHHc-CCcEEEECCCCCCHHHHHHH
Confidence 344444443 35588899999999999843
No 312
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.00 E-value=31 Score=31.85 Aligned_cols=39 Identities=36% Similarity=0.509 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHH
Q 000113 1713 DRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAM 1751 (2159)
Q Consensus 1713 ~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~ 1751 (2159)
|-+-|-+..++|..+.+.+..|++.|..||..|+.+|.+
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~ 44 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQM 44 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 456777889999999999999999999999999999864
No 313
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.96 E-value=1.8e+02 Score=34.47 Aligned_cols=99 Identities=16% Similarity=0.267 Sum_probs=68.2
Q ss_pred hHHHHHHHHhHHHHHhHHHHHHhHhhhh-hhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhh
Q 000113 1781 EEEVKILEHSIEELEHTVNALEKKVYEM-NGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSR 1859 (2159)
Q Consensus 1781 eeevk~le~sveele~tin~LE~kV~~~-k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r 1859 (2159)
+-|+--|.|-.-+||.-+.-.|+++..- ...-..-.|+|.++|.=|-=-++++...++ +.... | -
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~-~~~~~------~-------~ 160 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE-GRSKS------G-------K 160 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc-cCCCC------C-------C
Confidence 4455568888888888888887766552 222234578888887776656667776664 21111 1 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000113 1860 KLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCK 1893 (2159)
Q Consensus 1860 ~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k 1893 (2159)
-+......|.-...++..|+.-++.|..|..|++
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444466678888999999999999999999875
No 314
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.87 E-value=6.5e+02 Score=30.84 Aligned_cols=64 Identities=28% Similarity=0.322 Sum_probs=42.2
Q ss_pred HHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHh
Q 000113 1726 EELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKV 1805 (2159)
Q Consensus 1726 ~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV 1805 (2159)
.-++.+..+|+++|.++-.+.+-|....+ ++ ++=..||+-||..|++-..+
T Consensus 149 ~slK~vlk~R~~~Q~~le~k~e~l~k~~~---dr------------------~~~~~ev~~~e~kve~a~~~-------- 199 (243)
T cd07666 149 ETLMGVIKRRDQIQAELDSKVEALANKKA---DR------------------DLLKEEIEKLEDKVECANNA-------- 199 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hH------------------HHHHHHHHHHHHHHHHHHHH--------
Confidence 44567788899888888887776665210 01 12223888888888888555
Q ss_pred hhhhhhHHhhhhhHh
Q 000113 1806 YEMNGEVERHHLIRD 1820 (2159)
Q Consensus 1806 ~~~k~e~~r~r~~r~ 1820 (2159)
||.|++|-.-.|.
T Consensus 200 --~k~e~~Rf~~~k~ 212 (243)
T cd07666 200 --LKADWERWKQNMQ 212 (243)
T ss_pred --HHHHHHHHHHHHH
Confidence 5578888766554
No 315
>PF15294 Leu_zip: Leucine zipper
Probab=45.82 E-value=2e+02 Score=35.61 Aligned_cols=103 Identities=12% Similarity=0.160 Sum_probs=73.4
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 000113 1348 SMLNTLLKANENAKQLNDKWRQAGEQLMADRASLTDEVEQLKFLIRLKEEENELLMDHLHFNMSEIDTSISLLEGCFLQV 1427 (2159)
Q Consensus 1348 ~mlnaL~~ANE~~K~~~~~~Kq~~e~l~~Ek~~L~~evq~Lks~i~~ke~en~~L~~~~~~~L~em~~~v~~LE~~~~q~ 1427 (2159)
-+|..|-..|+.+|--.-..-...-..+-||..|-..+..|+....-..... .+- --+..+.++.+.+..++.-|..-
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~-~~~-~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKK-DLS-FKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccc-ccccchhhHHHHHHHHHHHHHHH
Confidence 3577888888888887777777777788999999999888888322111100 000 13456777788888888777777
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 000113 1428 QKEVEDRFKELYSDALLMGRDVHHF 1452 (2159)
Q Consensus 1428 q~~~~e~~~~~~~d~~~~~~~~l~~ 1452 (2159)
..+.+.+-+++..++.+.+.+++..
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~ 234 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRV 234 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7778888888888888877777653
No 316
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.81 E-value=6.2e+02 Score=35.34 Aligned_cols=11 Identities=27% Similarity=0.187 Sum_probs=6.1
Q ss_pred cccchhccCCc
Q 000113 67 SDRKVVETSGS 77 (2159)
Q Consensus 67 ~~~~~~~~~~~ 77 (2159)
.+-|+|.....
T Consensus 42 ~~L~vWd~~e~ 52 (717)
T PF10168_consen 42 GDLFVWDSSEC 52 (717)
T ss_pred CEEEEEECCCC
Confidence 46667755443
No 317
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=45.79 E-value=14 Score=43.64 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=15.5
Q ss_pred CceeEeecccCCCcceeec
Q 000113 236 NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~ 254 (2159)
...|+=||++|||||++..
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3457789999999999863
No 318
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=45.78 E-value=8.9 Score=49.58 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=29.4
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHH-Hhhc--C--CCceeEeecccCCCcceeec
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVE-NCLS--G--YNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~-~vLe--G--yN~TIFAYGQTGSGKTYTM~ 254 (2159)
.++||.|.+.....+.+.+.+ ..+-. ..+. | ....|+-||++|||||+..-
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~-~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIV-DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 477888877654444444322 11110 0111 2 23358889999999999863
No 319
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=45.59 E-value=8 Score=46.89 Aligned_cols=44 Identities=30% Similarity=0.483 Sum_probs=26.9
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhc-----C--CCceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLS-----G--YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLe-----G--yN~TIFAYGQTGSGKTYTM 253 (2159)
.+||-|. .|++-=..| .+|-..|. | ---+|+=||++|+|||++-
T Consensus 118 it~ddVi----GqEeAK~kc--rli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~A 168 (368)
T COG1223 118 ITLDDVI----GQEEAKRKC--RLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ccHhhhh----chHHHHHHH--HHHHHHhhChHHhcccCcceeEEECCCCccHHHHH
Confidence 5666665 455544333 23333332 2 2457899999999999764
No 320
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=45.56 E-value=12 Score=50.08 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=29.9
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
-+|+.+++ |...... ++..+..++...|+=||++|+|||+..
T Consensus 151 ~~~~~iiG----qs~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVG----QERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhcee----CcHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 46777764 3444332 455566788888999999999999875
No 321
>PHA02653 RNA helicase NPH-II; Provisional
Probab=45.37 E-value=18 Score=48.90 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=18.4
Q ss_pred hHHHHhhcCCCceeEeecccCCCccee
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYT 252 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYT 252 (2159)
.++..++.|- .|+..|+||||||..
T Consensus 171 qil~~i~~gk--dvIv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRK--PVVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCC--CEEEECCCCCCchhH
Confidence 3445556664 569999999999965
No 322
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.35 E-value=98 Score=36.62 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhh
Q 000113 2053 EQIILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISEL 2122 (2159)
Q Consensus 2053 e~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eL 2122 (2159)
++++..|+.++++.-.+-+.-..+|.++-++ ..-.+.+|+++-+-|+.|++.++.+++.+..+...+
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQ---SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777665533333333332222 333344444444444444444444444444333333
No 323
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=45.15 E-value=11 Score=47.60 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=18.4
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.| |++-++||||||.+.
T Consensus 39 ip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCc--EEEECCCCchHHHHH
Confidence 345678877 566779999999864
No 324
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=45.07 E-value=8.7 Score=40.34 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=13.4
Q ss_pred eEeecccCCCcceee
Q 000113 239 MFAYGQTGSGKTYTM 253 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM 253 (2159)
|+-.|.+|||||+-.
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999875
No 325
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=44.96 E-value=1e+03 Score=32.92 Aligned_cols=118 Identities=13% Similarity=0.141 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHH---hhhh-------hHHHH-------HHHHHHHHhhhhhhhhhh
Q 000113 1719 EEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYA---LADE-------NEAIA-------VEARQELEASKLYAEQKE 1781 (2159)
Q Consensus 1719 ~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a---~a~e-------~eaia-------~ea~q~ae~~k~yae~ke 1781 (2159)
..+..++..|..+..+|...+.....++..+...-. .++- +-.|+ .-.++.++.+..|.+ +-
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~-~h 315 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLA-NH 315 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCC-CC
Confidence 457777788888888888877777777777654211 1100 01111 112234555566654 34
Q ss_pred HHHHHHHHhHHHHHhHHHH-HHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcc
Q 000113 1782 EEVKILEHSIEELEHTVNA-LEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1782 eevk~le~sveele~tin~-LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
-.|+-+...+++|+..|.. +.+-+.-+..+.+..+-...+|+..+..+++++....
T Consensus 316 P~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~ 372 (754)
T TIGR01005 316 PRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAG 372 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5677788888888877653 2222333444555555555566666666666655443
No 326
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=44.87 E-value=8.8 Score=39.10 Aligned_cols=15 Identities=40% Similarity=0.386 Sum_probs=12.9
Q ss_pred eEeecccCCCcceee
Q 000113 239 MFAYGQTGSGKTYTM 253 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM 253 (2159)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 567899999999875
No 327
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=44.76 E-value=2e+02 Score=33.94 Aligned_cols=106 Identities=15% Similarity=0.235 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhH
Q 000113 1718 CEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHT 1797 (2159)
Q Consensus 1718 ~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~t 1797 (2159)
..++..+--.-..+..+.+++...+-.+.++-..|..-.+ |..|.+|=+ -.+.| ++.+.-|+.+++.+..+
T Consensus 44 r~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~--EdLAr~Al~---~k~~~----~~~~~~l~~~~~~~~~~ 114 (219)
T TIGR02977 44 RTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGR--EDLARAALI---EKQKA----QELAEALERELAAVEET 114 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHH
Confidence 3333333334444444555566666666666665555443 344444433 22222 34566778888888888
Q ss_pred HHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHh
Q 000113 1798 VNALEKKVYEMNGEVERHHLIRDSLELEIQALRRR 1832 (2159)
Q Consensus 1798 in~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~ 1832 (2159)
|.-|+.++..|+..++.-+-.+..|-...++.+-+
T Consensus 115 v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 115 LAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888887776655543
No 328
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=44.72 E-value=1.9e+02 Score=36.19 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHhhH
Q 000113 1720 EVESVEEELRKVSKERDKLWVEICSLN 1746 (2159)
Q Consensus 1720 ~v~~l~~~l~~~~~Erd~l~~e~~~l~ 1746 (2159)
.++.++..+..+..|||....=+..++
T Consensus 10 l~~~l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888899999988877665655
No 329
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.68 E-value=9e+02 Score=32.14 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLY 1776 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~y 1776 (2159)
...+-..|-..+.++-++..|+..|+-|+-++-++|...+|.-| |-.-.+|..---.+++|
T Consensus 391 ikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtd--ellf~sakhddhvR~ay 451 (521)
T KOG1937|consen 391 IKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTD--ELLFMSAKHDDHVRLAY 451 (521)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHhccCHHHHHHH
Confidence 44555667777899999999999999999999999999999999 55667777766666776
No 330
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=44.67 E-value=13 Score=43.04 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=24.6
Q ss_pred hchhHHHHhhcCC---CceeEeecccCCCcceee
Q 000113 223 AGLPMVENCLSGY---NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 223 v~~PLV~~vLeGy---N~TIFAYGQTGSGKTYTM 253 (2159)
++-|-++.++.|- .+++.-+|.+|||||+-.
T Consensus 9 tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 9 TGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred cCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 4567788888754 778899999999998754
No 331
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=44.50 E-value=13 Score=44.94 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=26.9
Q ss_pred HHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 218 KLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 218 eVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
-|+-..+.|++ ..+.--+..+.-||+|++|||.++
T Consensus 176 ~l~~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 176 ALCAAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 34456667777 556666778899999999999876
No 332
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=44.27 E-value=12 Score=50.34 Aligned_cols=32 Identities=28% Similarity=0.225 Sum_probs=22.2
Q ss_pred chhHHHHhhc-----CCCceeEeecccCCCcceeeccc
Q 000113 224 GLPMVENCLS-----GYNSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 224 ~~PLV~~vLe-----GyN~TIFAYGQTGSGKTYTM~G~ 256 (2159)
+..++..+.. |.+..++.. .||||||+||..-
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~l 283 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLFA 283 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHHH
Confidence 4456666665 345555554 9999999999763
No 333
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=44.14 E-value=16 Score=46.62 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=39.4
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhc--C--CCceeEeecccCCCccee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLS--G--YNSCMFAYGQTGSGKTYT 252 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLe--G--yN~TIFAYGQTGSGKTYT 252 (2159)
.+.|+.+.+...--..+.+.++..++++++. | .---+.-||+.|+|||+.
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 4788888887777778888888888998885 2 223467799999999987
No 334
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=43.91 E-value=7.3 Score=40.25 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=13.4
Q ss_pred eEeecccCCCcceee
Q 000113 239 MFAYGQTGSGKTYTM 253 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM 253 (2159)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 577999999999987
No 335
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=43.88 E-value=1.6e+02 Score=33.09 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=55.1
Q ss_pred hHHHhhhhhhhhhccCCCCchhhhHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 000113 1024 SLRDASGQIESIVCLFPQFNVEVTENVGRAAKVCIEKDETILLLQKSLEEAQKMVVEMKEKCI 1086 (2159)
Q Consensus 1024 sl~dAs~qi~~I~~SFP~~~~wIsEhV~~a~r~~iEKE~~I~~Lq~~LEdA~~m~~dme~kL~ 1086 (2159)
.|--+.-|||-.+.|||-.-.....|++++.|.-.|.++.-.+|+.-+.++.+...-|...|.
T Consensus 64 ~i~~~akqId~LIdsLP~~~~~~e~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le 126 (139)
T KOG1510|consen 64 DIAKKAKQIDTLIDSLPGEEGSAEAQLEKIKKLQEENEEVALELEELVSKGEKLLEQVQSLLE 126 (139)
T ss_pred HHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377889999999999999999999999999999999999988888888888887777766654
No 336
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=43.83 E-value=50 Score=35.40 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=44.6
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhHH
Q 000113 2072 SCTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISELDD 2124 (2159)
Q Consensus 2072 s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd~ 2124 (2159)
..++-+++=...|.+..-.++.|+..-+-|..||--|+|||.+|+.++.+++.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666777777788899999999999999999999999999999986
No 337
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.67 E-value=7e+02 Score=30.59 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=51.7
Q ss_pred HHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHh
Q 000113 1726 EELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKV 1805 (2159)
Q Consensus 1726 ~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV 1805 (2159)
+-++.|..-|||.|.+.-.+.+-| | -|-+.+.-|+--||+++..|.. =.
T Consensus 146 ~slk~vlK~RdqkQ~d~E~l~E~l-----------~-----------------~rre~~~kLe~~ie~~~~~ve~---f~ 194 (240)
T cd07667 146 ESMKNVLKKRDQVQAEYEAKLEAV-----------A-----------------LRKEERPKVPTDVEKCQDRVEC---FN 194 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------H-----------------HHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 467778888999999887766654 1 1777888899999999988844 45
Q ss_pred hhhhhhHHhhhhhHh-hHHHHHHH
Q 000113 1806 YEMNGEVERHHLIRD-SLELEIQA 1828 (2159)
Q Consensus 1806 ~~~k~e~~r~r~~r~-~le~e~~~ 1828 (2159)
..++.|++|-.-+|. ++..-|..
T Consensus 195 ~~~~~E~~~Fe~~K~~e~k~~l~~ 218 (240)
T cd07667 195 ADLKADMERWQNNKRQDFRQLLMG 218 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889998766654 44444433
No 338
>PRK04325 hypothetical protein; Provisional
Probab=43.64 E-value=85 Score=31.64 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=46.9
Q ss_pred HHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcc
Q 000113 1787 LEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1787 le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
++..|++||..+--+|.-|..|++.|-+|+.+=+.|...++.|..++..++
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566699999999999999999999999999999999999999999998876
No 339
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=43.57 E-value=3.1e+02 Score=30.47 Aligned_cols=115 Identities=17% Similarity=0.327 Sum_probs=83.3
Q ss_pred HHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHH
Q 000113 1793 ELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAH 1872 (2159)
Q Consensus 1793 ele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~ 1872 (2159)
-...+||+ |+.|-.--+|..-+|++|...++.++..+....+.- ..++..+.+...++..++
T Consensus 32 ~~~~vin~----i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~--------------~rL~~~~~~~ere~~~~~ 93 (151)
T PF11559_consen 32 NDVRVINC----IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDV--------------ERLKEQLEELERELASAE 93 (151)
T ss_pred cHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 34455665 456667777888888999999888888777766442 255667777777777788
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 000113 1873 HRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQ 1925 (2159)
Q Consensus 1873 ~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k 1925 (2159)
.+.+-|+..+.....-.+.+|+=+.-+..-...-..+|..-.|--|-.+..+|
T Consensus 94 ~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 94 EKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887777777777777777777776666665554
No 340
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=43.53 E-value=3.6e+02 Score=35.10 Aligned_cols=228 Identities=19% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhHHHHHHHHHHHHHHHHHhhh
Q 000113 592 REKMAEAVTQKLEAEIEHMNRLLCQREEDTQHTKMMLRFREEKIKQLELLVNGSVTAEKYLMDENIALKEEIQLLQARID 671 (2159)
Q Consensus 592 re~~~E~e~~kleeeie~ln~Ll~qkee~~q~sk~~lklree~i~~lE~l~s~~l~~E~~L~~En~~lk~Ei~~Lq~~~d 671 (2159)
|-.+...+-+-+..+.+.+.--..-..++....+..-...+.+-.+.|-.++ ++|+.+..++++|-..|---|+
T Consensus 51 rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfis------ntLlkkiqal~keketla~~Ye 124 (552)
T KOG2129|consen 51 RVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFIS------NTLLKKIQALFKEKETLATVYE 124 (552)
T ss_pred HHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHH------HHHHHHHHHhhccccccchhhh
Q ss_pred hChHHH---------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHhhcccccccccchhhhhhHHHH
Q 000113 672 RNPELT---------RFALENIRLLEQLQLFQSFYEQGEREKLLAELAELRDQ-LLDIVEGKERFSSRHENQENDTTTEL 741 (2159)
Q Consensus 672 ~~~Ev~---------~~~~En~~L~eel~~~~~f~~~gere~l~~ei~~Lr~q-l~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (2159)
++.|.. +..-|.-.|..-|..+|+|| +-.|..-|-.|.+. ++....-+ |+..-.-+|
T Consensus 125 ~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~----vnKlm~ki~Klen~t~~kq~~le---------QLRre~V~l 191 (552)
T KOG2129|consen 125 VEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFF----VNKLMNKIRKLENKTLLKQNTLE---------QLRREAVQL 191 (552)
T ss_pred hhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHH----HHHHHHHHHHhhhhhHHhhhhHH---------HHHHHHHHH
Q ss_pred HHHHh------------hhhHHHHHHHHHHHHhhhccccCCccccccCCcchhh-hhhhcccchhhhhhccCCCCCCCCC
Q 000113 742 ENCRN------------MNSKLMREVEELRTELRNCGQATSSSAADSFSKDSVE-FRRADKFSLVETISMKTDSGDEQTP 808 (2159)
Q Consensus 742 ~~c~~------------~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~~~~~~~e~~~ 808 (2159)
+...+ --.||+.|-+.|+..|.+.-.+.+.-...+--++--. -..+..++.+.
T Consensus 192 entlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~-------------- 257 (552)
T KOG2129|consen 192 ENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDK-------------- 257 (552)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHH--------------
Q ss_pred CCcccccccccccccCCc-----chhhhhhhHHHHHHHHHHHHhhhhHHHH
Q 000113 809 YNLTDDQNMRNDQILHPS-----DTEKQLTDAKMLIEALEREQVHQNRELH 854 (2159)
Q Consensus 809 ~~l~~~~~~~~~~~~~~~-----~~~~~l~~a~~~~ealesqqi~~i~e~~ 854 (2159)
|..+++-.+..+..+- .+-.-..+-+...|+.+..|.+||+|++
T Consensus 258 --l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~e 306 (552)
T KOG2129|consen 258 --LQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELE 306 (552)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
No 341
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=43.34 E-value=6.2e+02 Score=29.88 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHH
Q 000113 1596 EKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVI 1639 (2159)
Q Consensus 1596 e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~ 1639 (2159)
++.-..+..++.-|..=...++-++.+++-|..-+.+-..++..
T Consensus 7 ~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~ 50 (216)
T cd07627 7 IEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEA 50 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555566777777888887777777766654
No 342
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=43.12 E-value=9.3 Score=48.34 Aligned_cols=17 Identities=41% Similarity=0.853 Sum_probs=14.7
Q ss_pred eeEeecccCCCcceeec
Q 000113 238 CMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~ 254 (2159)
.|+-||.+||||||+.-
T Consensus 32 ~~~iyG~sgTGKT~~~r 48 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLVR 48 (438)
T ss_pred eEEEeccCCCchhHHHH
Confidence 36889999999999973
No 343
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=43.03 E-value=8.4 Score=40.70 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=13.5
Q ss_pred eEeecccCCCcceee
Q 000113 239 MFAYGQTGSGKTYTM 253 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM 253 (2159)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999876
No 344
>PRK00846 hypothetical protein; Provisional
Probab=42.99 E-value=86 Score=32.15 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=48.3
Q ss_pred HHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcc
Q 000113 1787 LEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1787 le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
++..+++||..+--.|.=|..|++.|-+|+..=+.|...++.|+.++..++
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678899999999999999999999999999999999999999999999988
No 345
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=42.79 E-value=2e+02 Score=33.91 Aligned_cols=100 Identities=27% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhh-hChHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccccccc---
Q 000113 653 MDENIALKEEIQLLQARID-RNPELTRFALENIRLLEQLQLFQSFYEQGEREKLLAELAELRDQLLDIVEGKERFSS--- 728 (2159)
Q Consensus 653 ~~En~~lk~Ei~~Lq~~~d-~~~Ev~~~~~En~~L~eel~~~~~f~~~gere~l~~ei~~Lr~ql~~~~~~~~~~~~--- 728 (2159)
++-..+|+++|..++.+.+ ....+.....||.+|.+-|.. +..|+..|+.+|-..-..|..+..
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~------------a~~e~~eL~k~L~~y~kdK~~L~~~k~ 93 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKK------------AEEEVEELRKQLKNYEKDKQSLQNLKA 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---ccchhhhhhHHHHHHHHhhhhHHHHHHHHHHHHhhh
Q 000113 729 ---RHENQENDTTTELENCRNMNSKLMREVEELRTELRN 764 (2159)
Q Consensus 729 ---~~~~~~~~~~~~~~~c~~~~~~l~r~~~~~~~~~~~ 764 (2159)
..+.++.++..+-+.=..--.++.+|-++|...+..
T Consensus 94 rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 346
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=42.72 E-value=13 Score=50.10 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=26.8
Q ss_pred HHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 218 KLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 218 eVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.||..+....-.-.-.|-|-||+-.|.+|||||+|+
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 366554444433344689999999999999999996
No 347
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.30 E-value=1.2e+03 Score=33.03 Aligned_cols=94 Identities=19% Similarity=0.216 Sum_probs=58.8
Q ss_pred hhhhcccchhhhhhhccccchhhhHHHHHHHHHHH------HHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhh
Q 000113 1571 LQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQV------RQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTI 1644 (2159)
Q Consensus 1571 ~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~------~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~ 1644 (2159)
..-+.|||..-+=+- +.|.+++.+-.= +.+++.|. ++.+...++++-+-+.+...-+...+...
T Consensus 611 ~~k~~lD~~f~kL~k--------ele~~i~k~ls~~~eee~~~~~~~k~--~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~ 680 (970)
T KOG0946|consen 611 NTKLALDFEFKKLFK--------ELEGLIAKLLSSKTEEEEQTQLAEKY--HEELDDIQQKYKGLIRELDYQIENLKQME 680 (970)
T ss_pred CchhhhhHHHHHHHH--------HHHHHHHHHhcCCCccchhhHHHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344667776554332 244444444332 23344442 23344466777666666666666688888
Q ss_pred hHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Q 000113 1645 DTLSDQNADLRVLLKDLYLKKSEAEEHLEE 1674 (2159)
Q Consensus 1645 ~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e 1674 (2159)
..+..||.+|...+.+..-..+.++++++.
T Consensus 681 ~~l~~e~eeL~~~vq~~~s~hsql~~q~~~ 710 (970)
T KOG0946|consen 681 KELQVENEELEEEVQDFISEHSQLKDQLDL 710 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988888888777777766653
No 348
>PLN03025 replication factor C subunit; Provisional
Probab=41.88 E-value=12 Score=45.72 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=25.3
Q ss_pred EeceecCCCCChHHHHHhhchhHHHHhhc-CCCceeEeecccCCCcceeecc
Q 000113 205 TFDHIACEMISQEKLFRVAGLPMVENCLS-GYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 205 tFD~VFde~aSQEeVFe~v~~PLV~~vLe-GyN~TIFAYGQTGSGKTYTM~G 255 (2159)
+||.|. .|.++... +..++. |.-..++=||+.|+|||++...
T Consensus 11 ~l~~~~----g~~~~~~~-----L~~~~~~~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 11 KLDDIV----GNEDAVSR-----LQVIARDGNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CHHHhc----CcHHHHHH-----HHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 355555 45555433 233333 3333455699999999999865
No 349
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=41.84 E-value=14 Score=47.33 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=19.1
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..+++|.| |++-++||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445677877 788889999999874
No 350
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=41.77 E-value=1.4e+03 Score=33.36 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHhhcC
Q 000113 1868 LQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQK-YKTLEAMIREMQTN 1927 (2159)
Q Consensus 1868 l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k-~k~lEaM~~~~k~~ 1927 (2159)
+..-...|+.|+..+........+|++-|+++- .. -..||-||++..-.
T Consensus 865 y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~k-----------e~w~~~le~~V~~In~~ 914 (1072)
T KOG0979|consen 865 YEVREDELRELETKLEKLSEDLERIKDKLSDVK-----------EVWLPKLEEMVEQINER 914 (1072)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHH
Confidence 334456788888888888888888888887752 22 35688898776543
No 351
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.74 E-value=11 Score=46.89 Aligned_cols=18 Identities=44% Similarity=0.567 Sum_probs=15.1
Q ss_pred CCceeEeecccCCCccee
Q 000113 235 YNSCMFAYGQTGSGKTYT 252 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYT 252 (2159)
.-+.|+-.|+||||||+-
T Consensus 96 ~KSNILLiGPTGsGKTlL 113 (408)
T COG1219 96 SKSNILLIGPTGSGKTLL 113 (408)
T ss_pred eeccEEEECCCCCcHHHH
Confidence 346789999999999973
No 352
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.66 E-value=6.5e+02 Score=30.85 Aligned_cols=46 Identities=37% Similarity=0.390 Sum_probs=40.0
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHH
Q 000113 1707 LRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMA 1752 (2159)
Q Consensus 1707 ~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a 1752 (2159)
+|.|.....+.-..++...+.|.+...+||++..||-.+.+|.+-|
T Consensus 151 lK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a 196 (243)
T cd07666 151 LMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5666666777777889999999999999999999999999999888
No 353
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.55 E-value=10 Score=47.99 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=16.6
Q ss_pred CceeEeecccCCCcceeecc
Q 000113 236 NSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~G 255 (2159)
...|.-+|+||+|||+|+..
T Consensus 137 g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45677899999999999843
No 354
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=41.46 E-value=24 Score=42.26 Aligned_cols=42 Identities=29% Similarity=0.266 Sum_probs=27.3
Q ss_pred cCCCCChHHHHHhhchhHHHHhhc--CCCceeEeecccCCCccee
Q 000113 210 ACEMISQEKLFRVAGLPMVENCLS--GYNSCMFAYGQTGSGKTYT 252 (2159)
Q Consensus 210 Fde~aSQEeVFe~v~~PLV~~vLe--GyN~TIFAYGQTGSGKTYT 252 (2159)
|++...|+.|-... +.+++.+.. +.-..++=||+.|.|||.-
T Consensus 23 L~efiGQ~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 45566899988763 567777654 3345688899999999853
No 355
>PHA02244 ATPase-like protein
Probab=41.16 E-value=18 Score=45.98 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=17.7
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceee
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.+..-+-.|.+. +=+|+||+|||+-.
T Consensus 111 ri~r~l~~~~PV--LL~GppGtGKTtLA 136 (383)
T PHA02244 111 DIAKIVNANIPV--FLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 344444456654 44899999999875
No 356
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=40.85 E-value=2.5e+02 Score=32.94 Aligned_cols=60 Identities=27% Similarity=0.324 Sum_probs=43.6
Q ss_pred hhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcc
Q 000113 1778 EQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1778 e~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
.+.|++++-||+-|.+|+..-..+-.+....+.|+.|-...=+.+..++...+.+-.+|-
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355777788888888888887777777777777777777777777777777776666554
No 357
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=40.85 E-value=1.4e+03 Score=33.35 Aligned_cols=290 Identities=19% Similarity=0.275 Sum_probs=142.6
Q ss_pred hHHHHhhHHHHhhhhcccchhhhhhhccccchhhhHHH----HHHHHH--HHHHHHhhhhhhhHHHHHHhHHHHhhhhch
Q 000113 1560 LKKELQRKEVLLQGLLFDFSLLQESASNKKDIKDETEK----LFSTLS--QVRQDLDRKASQLDNLLLQHEKLEASLTDT 1633 (2159)
Q Consensus 1560 l~~El~RK~~~~kGL~FD~sLLQESaSn~kD~kDe~e~----l~~~l~--~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~ 1633 (2159)
++.|.++...-...+. +..|.+.-..|-|.-+..+ ...|-. .+..++. .-+..-.|-+-..+|++..+.
T Consensus 158 lK~EYeelK~E~~kAE---~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~--~~q~e~~L~qLfhvE~~i~k~ 232 (1141)
T KOG0018|consen 158 LKPEYEELKYEMAKAE---ETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKG--KAQKEQFLWELFHVEACIEKA 232 (1141)
T ss_pred hhHHHHHHHHHHHHHH---HHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhhHhhh
Confidence 4444444444333332 3345555555555554421 222222 2222222 234455666777788888888
Q ss_pred hhHHHHhh----hhhhHHhhhhHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHH------HHHHHhhhcccchhhhhhh
Q 000113 1634 ENALVIAK----GTIDTLSDQNADLRVLLKD---LYLKKSEAEEHLEEQKEVITG------LEKEILHRTSEDKKLLTSV 1700 (2159)
Q Consensus 1634 ~~al~~~~----~~~~~ls~eN~eLr~~l~~---~~~~k~~~e~~L~e~~~vie~------LE~eil~l~s~~~~~~~~~ 1700 (2159)
..-|.... .........+.++++.=++ ++......+-.+.++.+.+.. ...+..++..- .
T Consensus 233 ~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~r-------l 305 (1141)
T KOG0018|consen 233 NDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKR-------L 305 (1141)
T ss_pred hHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhH-------H
Confidence 88777722 2233344555555544321 222222222222222222211 11122222222 3
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHH----HHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 000113 1701 ESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLND----KLAMAYALADENEAIAVEARQELEASKLY 1776 (2159)
Q Consensus 1701 ~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~----kle~a~a~a~e~eaia~ea~q~ae~~k~y 1776 (2159)
+.|-.+++..-.|-+..-+.++.++.++..|+--|.-...||..-.. +|.|.-..-+|-+-.-.||...+
T Consensus 306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~------ 379 (1141)
T KOG0018|consen 306 EEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA------ 379 (1141)
T ss_pred HHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh------
Confidence 44555666666777777777777777777777666666666654433 45555555555555555555544
Q ss_pred hhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhh
Q 000113 1777 AEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQ 1856 (2159)
Q Consensus 1777 ae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~ 1856 (2159)
.+|.-+|++-...=..|.+-+.++. .++|..+-.++..+.... + -...
T Consensus 380 ----~~el~~ln~~~r~~~~~ld~~~~~~--------------~elE~r~k~l~~sver~~--~------------~~~~ 427 (1141)
T KOG0018|consen 380 ----LEELEVLNRNMRSDQDTLDHELERR--------------AELEARIKQLKESVERLD--K------------RRNK 427 (1141)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhHHHHH--------------HHHHHHHHHHHHHHHHHH--H------------HHHH
Confidence 4556666665555555555444332 334444444443321110 0 0112
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhh
Q 000113 1857 MSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEV 1899 (2159)
Q Consensus 1857 ~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel 1899 (2159)
+.-+..+....+.+-...+..|++++..-..++..|++-+.++
T Consensus 428 L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~ 470 (1141)
T KOG0018|consen 428 LAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEV 470 (1141)
T ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3344444445555555555666666666666666666655553
No 358
>PRK11281 hypothetical protein; Provisional
Probab=40.81 E-value=1.5e+03 Score=33.53 Aligned_cols=250 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHH
Q 000113 1791 IEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQE 1870 (2159)
Q Consensus 1791 veele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~ 1870 (2159)
++-|+.|++-|. +....+.+++-.+=.=+....++....+++.....-.....+... +..+..++...+.+...+|++
T Consensus 62 ~~~l~~tL~~L~-qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~-~~~Sl~qLEq~L~q~~~~Lq~ 139 (1113)
T PRK11281 62 QQDLEQTLALLD-KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETL-STLSLRQLESRLAQTLDQLQN 139 (1113)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccc-cccCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhHH-------HHHHHHhhhhhhh--hhh---------HHHHHHHHHHHHHHHHHHHHhhcCC-CCc
Q 000113 1871 AHHRIQLLEREKEEQNE-------EIKRCKDYLSEVV--LHS---------EAQASQYQQKYKTLEAMIREMQTNL-SNT 1931 (2159)
Q Consensus 1871 a~~~i~~l~~~~~~k~~-------ei~q~k~~isel~--lh~---------eaqa~~y~~k~k~lEaM~~~~k~~~-~~~ 1931 (2159)
+++.+..+...+....+ .+..-..-+.|++ |.+ ++|--.++-....|++-....+.+. +++
T Consensus 140 ~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~ 219 (1113)
T PRK11281 140 AQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNT 219 (1113)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q ss_pred ccccccccccccccccccCCCCCCcchhhHHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhcchhH
Q 000113 1932 TAAAAPAQDKIEKSSTRLRGSSSPFRCIASVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAESMTHD 2011 (2159)
Q Consensus 1932 ~~~~~~~~~k~EK~s~rtRGS~SPFrCI~glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eSMTHD 2011 (2159)
+- ...++.|.+.+-.-...-|.+|-.|+
T Consensus 220 ~l----------------------------------------~~l~~~q~d~~~~~~~~~~~~~~~lq------------ 247 (1113)
T PRK11281 220 QL----------------------------------------QDLLQKQRDYLTARIQRLEHQLQLLQ------------ 247 (1113)
T ss_pred HH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred HHHhhhcccccccchhhhhhh---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHH
Q 000113 2012 VIRDLLGVKLDMTNYANLIDQ---EHVQKLVVAAQQQT-QELLAKEQIILNLRKRIEDLIEEHESCTSILKQREADILAA 2087 (2159)
Q Consensus 2012 VIRdLLGVKldmTnyA~liD~---~q~~kl~e~a~~~~-~e~~~ke~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aa 2087 (2159)
+.|.+ ++.++.+++|+... -+.....--+.++-+.=-.|-++=..-.+.||+-..+-..+
T Consensus 248 ----------------~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~ 311 (1113)
T PRK11281 248 ----------------EAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRV 311 (1113)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc
Q 000113 2088 QINVEQLRERDQLLSAQNDMLKM 2110 (2159)
Q Consensus 2088 qi~~eqL~qrdqlL~aqnemLk~ 2110 (2159)
.--+++++|=..-++-|.+.|+.
T Consensus 312 ~~~l~~~~q~~~~i~eqi~~l~~ 334 (1113)
T PRK11281 312 KNWLDRLTQSERNIKEQISVLKG 334 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
No 359
>PRK05580 primosome assembly protein PriA; Validated
Probab=40.74 E-value=15 Score=49.73 Aligned_cols=43 Identities=21% Similarity=0.019 Sum_probs=27.9
Q ss_pred eceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 206 FDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 206 FD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
++.-+..+..|..+++.+... . .+..++.+|+||||||.+.+-
T Consensus 139 ~~~~~~Lt~~Q~~ai~~i~~~----~---~~~~~Ll~~~TGSGKT~v~l~ 181 (679)
T PRK05580 139 AFEPPTLNPEQAAAVEAIRAA----A---GFSPFLLDGVTGSGKTEVYLQ 181 (679)
T ss_pred ccCCCCCCHHHHHHHHHHHhc----c---CCCcEEEECCCCChHHHHHHH
Confidence 333445566777776554322 1 334589999999999987643
No 360
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=40.35 E-value=77 Score=33.71 Aligned_cols=64 Identities=28% Similarity=0.438 Sum_probs=50.6
Q ss_pred hhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhh--hhhHHhhhhhHhhHHHHHHHHHHhhhhcc
Q 000113 1772 ASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEM--NGEVERHHLIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1772 ~~k~yae~keeevk~le~sveele~tin~LE~kV~~~--k~e~~r~r~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
.++.||. .+++.-|+.-+...+.-+..||.+|..| .+++-+-++-=..++-++.+++.++..|.
T Consensus 27 l~~~~a~--~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 27 LRRTYAK--REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3557875 7889999999999999999999999999 77777666666677777777777665554
No 361
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.24 E-value=1.8e+02 Score=32.08 Aligned_cols=90 Identities=36% Similarity=0.522 Sum_probs=62.9
Q ss_pred hhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 000113 1614 SQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLK--KSEAEEHLEEQKEVITGLEKEILHRTS 1691 (2159)
Q Consensus 1614 s~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~--k~~~e~~L~e~~~vie~LE~eil~l~s 1691 (2159)
.++..++.+.+.||++|.+...|+ +.++.+ ++....-..+=+++.+ +.++-++|+++. |.||.+|--|.+
T Consensus 20 ~ql~~~~~qk~~le~qL~E~~~al----~Ele~l-~eD~~vYk~VG~llvk~~k~~~~~eL~er~---E~Le~ri~tLek 91 (119)
T COG1382 20 QQLQKVILQKQQLEAQLKEIEKAL----EELEKL-DEDAPVYKKVGNLLVKVSKEEAVDELEERK---ETLELRIKTLEK 91 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHhcC-CcccHHHHHhhhHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 456678999999999999988777 444443 3444555555555544 556667777765 567788777766
Q ss_pred cchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHh
Q 000113 1692 EDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVS 1732 (2159)
Q Consensus 1692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~ 1732 (2159)
. +..+.+-++.|+..|.+..
T Consensus 92 Q---------------------e~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 92 Q---------------------EEKLQERLEELQSEIQKAL 111 (119)
T ss_pred H---------------------HHHHHHHHHHHHHHHHHHh
Confidence 6 7777778888888776654
No 362
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.94 E-value=3.8e+02 Score=30.56 Aligned_cols=53 Identities=28% Similarity=0.383 Sum_probs=35.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhHHHHHHH
Q 000113 2077 LKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISELDDMVKML 2129 (2159)
Q Consensus 2077 i~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd~~vk~L 2129 (2159)
+.....++.-.+-.+.+++++-+.+..+.+.++-+..++..++.++.++.++|
T Consensus 139 ~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 191 (191)
T PF04156_consen 139 IKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQL 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33333333333355666777777778888888888888888888888776653
No 363
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=39.79 E-value=19 Score=44.13 Aligned_cols=18 Identities=33% Similarity=0.494 Sum_probs=15.3
Q ss_pred ceeEeecccCCCcceeec
Q 000113 237 SCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~ 254 (2159)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 457789999999999874
No 364
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.79 E-value=24 Score=45.65 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=16.1
Q ss_pred CceeEeecccCCCcceeec
Q 000113 236 NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~ 254 (2159)
...|+-+|.+|+|||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4568889999999999973
No 365
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=39.73 E-value=9.9e+02 Score=31.22 Aligned_cols=182 Identities=18% Similarity=0.223 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHH
Q 000113 1592 KDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEH 1671 (2159)
Q Consensus 1592 kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~ 1671 (2159)
+.|++-.-....+++.|-+.-.++|..+=-..+..+.++.....-+.-|...+.-++.+-.+|+.-|+-+......++++
T Consensus 87 rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq 166 (499)
T COG4372 87 RTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQ 166 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666667777766677777888887777777799999999999999999999888777666665
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHH
Q 000113 1672 LEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAM 1751 (2159)
Q Consensus 1672 L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~ 1751 (2159)
+.- |-.+ -++|-.++.-|+..--++.-+-.+...+-..|-.+-+-
T Consensus 167 ~qs--------------l~a~---------------------~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a 211 (499)
T COG4372 167 AQS--------------LQAS---------------------QKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANA 211 (499)
T ss_pred HHH--------------HHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 1122 23333333444444444444444455555555566666
Q ss_pred HHHhhhhhHHHHHHHHHHHHh---hhh-------hhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhh
Q 000113 1752 AYALADENEAIAVEARQELEA---SKL-------YAEQKEEEVKILEHSIEELEHTVNALEKKVYEM 1808 (2159)
Q Consensus 1752 a~a~a~e~eaia~ea~q~ae~---~k~-------yae~keeevk~le~sveele~tin~LE~kV~~~ 1808 (2159)
+++.-+|---.+.-++|.+-+ +-. -+-.|+|-|.-=|+-..+||..-.-||..|..+
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~l 278 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQL 278 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555543333333332211 111 123466777777777777777777777766544
No 366
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=39.54 E-value=36 Score=45.89 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.9
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
.-++.+|+||||||.++
T Consensus 212 ~H~lv~ApTgsGKgvg~ 228 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSV 228 (623)
T ss_pred ceEEEEeCCCCCcccee
Confidence 36899999999999975
No 367
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=39.52 E-value=16 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=18.1
Q ss_pred cCCCceeEeecccCCCcceeecc
Q 000113 233 SGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.|--..++=||++|+|||++...
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHH
Confidence 45555788899999999988743
No 368
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.51 E-value=8.1e+02 Score=31.45 Aligned_cols=84 Identities=21% Similarity=0.221 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhHHHHHHHHhhhhHHHHHHHH
Q 000113 678 RFALENIRLLEQLQLFQSFYEQGEREKLLAELAELRDQLLDIVEGKERFSSRHENQENDTTTELENCRNMNSKLMREVEE 757 (2159)
Q Consensus 678 ~~~~En~~L~eel~~~~~f~~~gere~l~~ei~~Lr~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~l~r~~~~ 757 (2159)
+..-||.+|+-+|+.+..-+.+ +| +|-+.|-..|.+++-.+-.+-...++-...-+.-|..=..--++|++-|+|
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~E--ke---eesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGE--KE---EESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhH--hH---HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Confidence 3445788888888877765532 21 233333333333333322211111111111112222223355789999999
Q ss_pred HHHHhhhcc
Q 000113 758 LRTELRNCG 766 (2159)
Q Consensus 758 ~~~~~~~~~ 766 (2159)
|.+|+..-.
T Consensus 213 Lm~EirnLL 221 (401)
T PF06785_consen 213 LMYEIRNLL 221 (401)
T ss_pred HHHHHHHHH
Confidence 999988553
No 369
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=39.45 E-value=15 Score=48.40 Aligned_cols=29 Identities=31% Similarity=0.482 Sum_probs=21.6
Q ss_pred hhHHHHhhcCCC--ceeEeecccCCCcceee
Q 000113 225 LPMVENCLSGYN--SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 225 ~PLV~~vLeGyN--~TIFAYGQTGSGKTYTM 253 (2159)
+..+...+.|.. .-++-+||+|||||.|+
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 445566665553 45788999999999998
No 370
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=39.33 E-value=14 Score=47.97 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=18.9
Q ss_pred hcCCCceeEeecccCCCcceeecccc
Q 000113 232 LSGYNSCMFAYGQTGSGKTYTMMGEI 257 (2159)
Q Consensus 232 LeGyN~TIFAYGQTGSGKTYTM~G~~ 257 (2159)
.+|.+ ++|.+|||||||+...++.
T Consensus 109 ~~Grd--l~acAqTGsGKT~aFLiPi 132 (482)
T KOG0335|consen 109 SGGRD--LMACAQTGSGKTAAFLIPI 132 (482)
T ss_pred ecCCc--eEEEccCCCcchHHHHHHH
Confidence 34444 4899999999999998863
No 371
>PRK04328 hypothetical protein; Provisional
Probab=39.21 E-value=18 Score=42.89 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=23.9
Q ss_pred hchhHHHHhhcC---CCceeEeecccCCCcce
Q 000113 223 AGLPMVENCLSG---YNSCMFAYGQTGSGKTY 251 (2159)
Q Consensus 223 v~~PLV~~vLeG---yN~TIFAYGQTGSGKTY 251 (2159)
++-|-++.++.| ..++++-+|.+|||||.
T Consensus 7 tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 7 TGIPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred CCchhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 355778999977 48889999999999974
No 372
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.95 E-value=1.2e+03 Score=31.83 Aligned_cols=215 Identities=22% Similarity=0.258 Sum_probs=113.5
Q ss_pred HHHHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhH
Q 000113 1567 KEVLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDT 1646 (2159)
Q Consensus 1567 K~~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ 1646 (2159)
+.+.++.--|-|+||-|- -|.|-+.+++=+-....++||+.=--.|-....+|++.=..=.+.+.+|.. .
T Consensus 28 t~e~~qaAeyGL~lLeeK----~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLq------E 97 (772)
T KOG0999|consen 28 TEEKIQAAEYGLELLEEK----EDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQ------E 97 (772)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH------H
Confidence 678888888889999764 378889999999999999999987777888888888764333333444433 1
Q ss_pred HhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHH
Q 000113 1647 LSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEE 1726 (2159)
Q Consensus 1647 ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 1726 (2159)
-+.--..+--.|=++-..-.....+|+..+.=-++|++.-..+. +
T Consensus 98 SaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~-----------------------------------e 142 (772)
T KOG0999|consen 98 SAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLK-----------------------------------E 142 (772)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------------------h
Confidence 11111222222222333333333444444444444444333222 1
Q ss_pred HHHHHhhhhhhhHHHHHhhHHHHHHH---HHhhhhhHHHHH--------HHHHHHHhhhhhhhhhhHHHHHHHHhHHHHH
Q 000113 1727 ELRKVSKERDKLWVEICSLNDKLAMA---YALADENEAIAV--------EARQELEASKLYAEQKEEEVKILEHSIEELE 1795 (2159)
Q Consensus 1727 ~l~~~~~Erd~l~~e~~~l~~kle~a---~a~a~e~eaia~--------ea~q~ae~~k~yae~keeevk~le~sveele 1795 (2159)
+=..+-++|..|..||.-++.+=... |+--+ -|-|.. -.+=+-|.-|+----=+||+-+|--.+||++
T Consensus 143 ~~~~~E~qR~rlr~elKe~KfRE~RllseYSELE-EENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~ 221 (772)
T KOG0999|consen 143 SNAAVEDQRRRLRDELKEYKFREARLLSEYSELE-EENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAI 221 (772)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223344444444444443321111 11111 111211 1122344555555555777777777777777
Q ss_pred hHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHH
Q 000113 1796 HTVNALEKKVYEMNGEVERHHLIRDSLELEIQ 1827 (2159)
Q Consensus 1796 ~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~ 1827 (2159)
.---+-|++..+-=+=+.--|=+|..|..||-
T Consensus 222 ~Lk~IAekQlEEALeTlq~EReqk~alkkEL~ 253 (772)
T KOG0999|consen 222 RLKEIAEKQLEEALETLQQEREQKNALKKELS 253 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 76666666555544444444555555555543
No 373
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.88 E-value=17 Score=46.77 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=19.6
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeec
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.|..++.|.+ +++..+||||||.+..
T Consensus 19 ai~~~l~g~d--vlv~apTGsGKTl~y~ 44 (470)
T TIGR00614 19 VINAVLLGRD--CFVVMPTGGGKSLCYQ 44 (470)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHhHHHH
Confidence 3455678886 5667899999998753
No 374
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=38.79 E-value=4.8e+02 Score=32.87 Aligned_cols=52 Identities=37% Similarity=0.543 Sum_probs=47.1
Q ss_pred HHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhh
Q 000113 1783 EVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLS 1834 (2159)
Q Consensus 1783 evk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~ 1834 (2159)
+|.+|-..+|+||.|+.-|-++..+-.+|.+|+.-..+.|..|+..||.++.
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999888887654
No 375
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=38.64 E-value=16 Score=46.68 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=26.7
Q ss_pred ChHHHHHhhchhHHHHhhcCCCceeEeecccCCCccee
Q 000113 215 SQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYT 252 (2159)
Q Consensus 215 SQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYT 252 (2159)
.|+.+... +.|+=.-+-.|--.+.+=||+.|+|||.-
T Consensus 28 GQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 45555543 44666666678888889999999999963
No 376
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=38.53 E-value=12 Score=42.51 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=14.3
Q ss_pred ceeEeecccCCCcceeec
Q 000113 237 SCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~ 254 (2159)
..||..||.|||||+.+.
T Consensus 16 ~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 16 TLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp EEEEEES-TTSTTHHHHH
T ss_pred EEEEEeCCCCCCHHHHHH
Confidence 468999999999998864
No 377
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=38.20 E-value=20 Score=45.68 Aligned_cols=18 Identities=39% Similarity=0.667 Sum_probs=15.8
Q ss_pred ceeEeecccCCCcceeec
Q 000113 237 SCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~ 254 (2159)
..++.+|+||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 568999999999999873
No 378
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.18 E-value=4.1e+02 Score=34.61 Aligned_cols=90 Identities=17% Similarity=0.272 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000113 1597 KLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQK 1676 (2159)
Q Consensus 1597 ~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~ 1676 (2159)
.+...+..++.++..--.++.++-.....|++++......+.... +..++.|+..|.++-.....+.....+.-
T Consensus 201 ~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~------~~~~~~l~~~l~~l~~~l~~l~~~y~~~h 274 (498)
T TIGR03007 201 DYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGS------SVANSELDGRIEALEKQLDALRLRYTDKH 274 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCccc------ccCCCchHHHHHHHHHHHHHHHHHhcccC
Confidence 455667777777777777777777777777777765443332110 12344555555555555555555444444
Q ss_pred HHHHHHHHHHhhhccc
Q 000113 1677 EVITGLEKEILHRTSE 1692 (2159)
Q Consensus 1677 ~vie~LE~eil~l~s~ 1692 (2159)
--+..|..+|-.+...
T Consensus 275 P~v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 275 PDVIATKREIAQLEEQ 290 (498)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4445555555544443
No 379
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=38.09 E-value=18 Score=49.82 Aligned_cols=25 Identities=40% Similarity=0.450 Sum_probs=20.5
Q ss_pred HHHHhhcCCCceeEeecccCCCcceee
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.+..+.+|.|+.|.| +||||||-+=
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 345567999999988 8999999773
No 380
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=38.06 E-value=20 Score=41.16 Aligned_cols=32 Identities=34% Similarity=0.547 Sum_probs=24.8
Q ss_pred hchhHHHHhhcCC---CceeEeecccCCCcceeec
Q 000113 223 AGLPMVENCLSGY---NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 223 v~~PLV~~vLeGy---N~TIFAYGQTGSGKTYTM~ 254 (2159)
++-|-++.+|.|- ...+.-||.+|||||....
T Consensus 7 tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 7 TGCKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4567788999654 5567999999999987753
No 381
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=38.03 E-value=2.2e+02 Score=35.62 Aligned_cols=96 Identities=30% Similarity=0.362 Sum_probs=0.0
Q ss_pred hHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHH------------HHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccc
Q 000113 1645 DTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKE------------VITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTS 1712 (2159)
Q Consensus 1645 ~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~------------vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~ 1712 (2159)
+.|-.+|.||..+|+ +|.-|+.+=|+++ -|.-||.-||-=+.+ |.-.|..-.
T Consensus 3 dd~QN~N~EL~kQiE-----IcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaa-----------aNavrdYqr 66 (351)
T PF07058_consen 3 DDVQNQNQELMKQIE-----ICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAA-----------ANAVRDYQR 66 (351)
T ss_pred hhhhhhcHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----------HHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHH----------------------------HHHhhhhhhhHHHHHhhHHHHHHHHHhh
Q 000113 1713 DRDKLCEEVESVEEEL----------------------------RKVSKERDKLWVEICSLNDKLAMAYALA 1756 (2159)
Q Consensus 1713 ~~~~~~~~v~~l~~~l----------------------------~~~~~Erd~l~~e~~~l~~kle~a~a~a 1756 (2159)
-...|++.-.-|+.+| +.-..||..||.|+..|+|||..|.--|
T Consensus 67 q~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtA 138 (351)
T PF07058_consen 67 QVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTA 138 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 382
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=37.93 E-value=2.8e+02 Score=34.39 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=36.4
Q ss_pred HHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcccc
Q 000113 1797 TVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNF 1839 (2159)
Q Consensus 1797 tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~ 1839 (2159)
-|.-||-+++.||.|-.-.+++-++||+-||+.|+......+-
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e 61 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNE 61 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 3667788999999999999999999999999999877666543
No 383
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=37.91 E-value=39 Score=45.66 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=14.9
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
.-++.+|+||||||..+
T Consensus 225 ~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 225 THGLVFAGSGGFKTTSV 241 (641)
T ss_pred ceEEEEeCCCCCccceE
Confidence 46899999999999975
No 384
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=37.62 E-value=19 Score=42.93 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=16.5
Q ss_pred cCCCceeEeecccCCCcceee
Q 000113 233 SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.|....++=||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999886
No 385
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=37.40 E-value=16 Score=41.33 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=19.1
Q ss_pred HHhhcCC---CceeEeecccCCCcceee
Q 000113 229 ENCLSGY---NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGy---N~TIFAYGQTGSGKTYTM 253 (2159)
|.++.|- ...+.-||++|||||.-.
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4556554 677899999999998754
No 386
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=37.27 E-value=17 Score=48.74 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=19.0
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.+ |++.+|||||||.+.
T Consensus 37 i~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 37 IPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 455567865 788889999999875
No 387
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=37.20 E-value=20 Score=48.46 Aligned_cols=93 Identities=22% Similarity=0.235 Sum_probs=53.6
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCC--hh--HHHHHHH
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGI--TP--RIFEYLF 279 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GI--IP--Rale~LF 279 (2159)
|....-|.|.-.|..-|.. ++..+-.|-.. ...+|.|||||||||-+-..... .+-+ .| .....|+
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~-~~l~Gvtgs~kt~~~a~~~~~~~-----~p~Lvi~~n~~~A~ql~ 71 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKH-QTLLGVTGSGKTFTMANVIAQVN-----RPTLVIAHNKTLAAQLY 71 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCc-EEEECCCCcHHHHHHHHHHHHhC-----CCEEEEECCHHHHHHHH
Confidence 4445557888889887765 44555555322 23799999999999976432211 1111 12 2344555
Q ss_pred HHHHHHHhhhccccceEEEEEeeeeeeccccc
Q 000113 280 SRIRMEEENRRDERLKFSCKCSFLEIYNEQIT 311 (2159)
Q Consensus 280 ~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~ 311 (2159)
+.+..- .+.-.+...|||+--|.-..|
T Consensus 72 ~el~~f-----~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 72 NEFKEF-----FPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HHHHHh-----CCCCeEEEEeeecccCCcccc
Confidence 544221 112235566899988876554
No 388
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=37.08 E-value=1.7e+03 Score=33.26 Aligned_cols=287 Identities=17% Similarity=0.168 Sum_probs=158.0
Q ss_pred HHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHH----hhhhhh---HHhhhh-HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000113 1607 QDLDRKASQLDNLLLQHEKLEASLTDTENALVI----AKGTID---TLSDQN-ADLRVLLKDLYLKKSEAEEHLEEQKEV 1678 (2159)
Q Consensus 1607 ~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~----~~~~~~---~ls~eN-~eLr~~l~~~~~~k~~~e~~L~e~~~v 1678 (2159)
.+....+...+...+..+.+..-+..+.+.+.. ...... ..+-.+ ..+...+..+-..+.++++.+......
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ek~~~l~~~ 596 (1294)
T KOG0962|consen 517 DEELDGLNKDAEKRAKLELLKKKLRKKDAELRKIKSRLSDEKGRAIEFPLTNDRSLEKELHKLSKEIQEMEERLRMLQLE 596 (1294)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566667777777777777766 111111 122223 478888888888999999999999999
Q ss_pred HHHHHHHHhhhcccchhhhhhhh-hhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHH-------
Q 000113 1679 ITGLEKEILHRTSEDKKLLTSVE-SIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLA------- 1750 (2159)
Q Consensus 1679 ie~LE~eil~l~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle------- 1750 (2159)
..++|.-+.+.+.+ ++ .-.+.+-+-+.-..+-+.++.+..+.|..+-.+.+-.....+.|.-...
T Consensus 597 ~~~~e~~~~~~~~~-------~e~~~~e~~k~~~~~lk~~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie 669 (1294)
T KOG0962|consen 597 EQSLEINRNGIRKD-------LEDRKEEELKSKEFFLKDESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIE 669 (1294)
T ss_pred HHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 99999888888777 55 4555666666666666777777777776666666555555554443322
Q ss_pred -----------------------------HHHHhhhhhHHHHHHHH---HHHHhhhhhhhhhhHHHHHHHHhHHHHHhHH
Q 000113 1751 -----------------------------MAYALADENEAIAVEAR---QELEASKLYAEQKEEEVKILEHSIEELEHTV 1798 (2159)
Q Consensus 1751 -----------------------------~a~a~a~e~eaia~ea~---q~ae~~k~yae~keeevk~le~sveele~ti 1798 (2159)
|+.+.-++.+...++-- ...|+--.+++--..++++++.++.+++-+.
T Consensus 670 ~~~~~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~~~~~~~l~~~~i~e~~~~l 749 (1294)
T KOG0962|consen 670 IACRSHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLEEAEVELSKEEKIFEILLKLKPTFGSIIKLIDKEIPELEKEL 749 (1294)
T ss_pred HHhhccCCCccCCccchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHH
Confidence 22222222222222110 0112222333333445666666666666655
Q ss_pred HHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccc---c--------cccc-----ccccccCCCchhhhhhhHH
Q 000113 1799 NALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQN---F--------SDIV-----DSENINAGHTEDQMSRKLQ 1862 (2159)
Q Consensus 1799 n~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n---~--------~~~~-----~~~~~~~~~~~~~~~r~~~ 1862 (2159)
.-+...+..++++-+-...+-+.+.++.-.++--+..|.. + -.+. ......++++.+++..-..
T Consensus 750 ~~~~~el~~~~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~ 829 (1294)
T KOG0962|consen 750 QEVYEELGDLSEEEEDDEKLLDTIDAAEESAETLQTDVTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKS 829 (1294)
T ss_pred HHHHHHHHhhhhhhhHHHHHhcccchhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 5555555555444443333322111111111111111100 0 0000 0111244556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhh
Q 000113 1863 DRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVV 1900 (2159)
Q Consensus 1863 ~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~ 1900 (2159)
.....+-.-+..|..+..++-++..+|.....-.-|+.
T Consensus 830 ~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k 867 (1294)
T KOG0962|consen 830 KKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELK 867 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777888888888888888888877665555443
No 389
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.05 E-value=58 Score=31.28 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhHHHH
Q 000113 2089 INVEQLRERDQLLSAQNDMLKMDKTNLLKRISELDDMV 2126 (2159)
Q Consensus 2089 i~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd~~v 2126 (2159)
..+++|+.+-.-|+++|+.|+.++..|+..+..|..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35678888888888999999888888888888887654
No 390
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=36.83 E-value=6.4e+02 Score=33.47 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhChHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 000113 652 LMDENIALKEEIQLLQARIDRNPELTRFALENIRLLEQLQLFQSFYEQGEREKLLAELAELRDQLLDIVEGKERFSSRHE 731 (2159)
Q Consensus 652 L~~En~~lk~Ei~~Lq~~~d~~~Ev~~~~~En~~L~eel~~~~~f~~~gere~l~~ei~~Lr~ql~~~~~~~~~~~~~~~ 731 (2159)
|+-.|.-|.+.|+.||-++-+-+-..++.-++++--++|-.- .|--.=|+--+-.=+++|+.
T Consensus 336 Lq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIed-KY~viLEKnd~~k~lqnLqe----------------- 397 (527)
T PF15066_consen 336 LQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIED-KYRVILEKNDIEKTLQNLQE----------------- 397 (527)
T ss_pred hhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh-HhHhhhhhhhHHHHHHHHHH-----------------
Confidence 556677788888999988877776666666555544444321 11111233333333333333
Q ss_pred hhhhhhHHHHHHHHhhhhHHHHHHHHHHHHh
Q 000113 732 NQENDTTTELENCRNMNSKLMREVEELRTEL 762 (2159)
Q Consensus 732 ~~~~~~~~~~~~c~~~~~~l~r~~~~~~~~~ 762 (2159)
-+.+|.+.|..+|.++.-|+-++.++.+..
T Consensus 398 -~la~tqk~LqEsr~eKetLqlelkK~k~ny 427 (527)
T PF15066_consen 398 -ALANTQKHLQESRNEKETLQLELKKIKANY 427 (527)
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHHHhhhH
Confidence 267788999999999999998888776543
No 391
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.77 E-value=2.2e+02 Score=38.60 Aligned_cols=41 Identities=34% Similarity=0.331 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYA 1754 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a 1754 (2159)
...+-..|+.++.+.+.+..+=..++.+|-.|+.+|+-+..
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444557777788888888888888889888888876654
No 392
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=36.66 E-value=53 Score=40.92 Aligned_cols=34 Identities=21% Similarity=0.086 Sum_probs=15.8
Q ss_pred ccchhccCCcccccccCCCcc-ccccCCCCCCCCC
Q 000113 68 DRKVVETSGSFVATHVGTPRV-SVRSHGKIHSEPS 101 (2159)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~s 101 (2159)
.-|-++-+|..++..+.-|.| +..+.|.+.++++
T Consensus 391 ~e~P~E~ggcP~~ie~~VpmPsPl~S~GsslspS~ 425 (561)
T KOG1103|consen 391 AEFPTEKGGCPRAIEPAVPMPSPLMSIGSSLSPSL 425 (561)
T ss_pred ccCccccCCCCCCCCCCCCCCCcccccccccCCCC
Confidence 344444555555555555554 3333444444443
No 393
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=36.54 E-value=7.9e+02 Score=29.16 Aligned_cols=120 Identities=14% Similarity=0.098 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHH
Q 000113 1716 KLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELE 1795 (2159)
Q Consensus 1716 ~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele 1795 (2159)
-+.-.+..++++|.++...=-+.-..-..+..+++.+.+.+++-+--|.-|-+.-+. --|.+-=++.+-.+..++.|+
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~E--dLAr~Al~~k~~~~~~~~~l~ 105 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGRE--DLARAALIEKQKAQELAEALE 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 556667888888888888877777888888888999999998888877777663321 133333346666677777777
Q ss_pred hHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhcc
Q 000113 1796 HTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1796 ~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~ 1837 (2159)
..+..+...|..++.-+...+-..++....-..|.-|.....
T Consensus 106 ~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 106 RELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766666555555555444444444454444
No 394
>PRK04195 replication factor C large subunit; Provisional
Probab=36.32 E-value=14 Score=47.80 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=20.7
Q ss_pred hHHHHhhcCC-CceeEeecccCCCcceee
Q 000113 226 PMVENCLSGY-NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 226 PLV~~vLeGy-N~TIFAYGQTGSGKTYTM 253 (2159)
.++.....|. ...++-||++|+|||++.
T Consensus 28 ~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 28 EWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 4445555554 556888999999999886
No 395
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=36.30 E-value=20 Score=41.13 Aligned_cols=30 Identities=37% Similarity=0.609 Sum_probs=23.3
Q ss_pred hchhHHHHhhcC---CCceeEeecccCCCccee
Q 000113 223 AGLPMVENCLSG---YNSCMFAYGQTGSGKTYT 252 (2159)
Q Consensus 223 v~~PLV~~vLeG---yN~TIFAYGQTGSGKTYT 252 (2159)
+|-|-++.++.| .+++++-+|++|||||.-
T Consensus 3 TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 3 TGIPGLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp -SSTTHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred CCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 355678888855 388999999999999743
No 396
>PHA02607 wac fibritin; Provisional
Probab=36.24 E-value=2.1e+02 Score=37.53 Aligned_cols=193 Identities=16% Similarity=0.207 Sum_probs=127.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHh
Q 000113 1711 TSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHS 1790 (2159)
Q Consensus 1711 ~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~s 1790 (2159)
++..|-||-+-=.+|.+. .+|++....+++|++-....+.+-..+---.=-..=..++|.- .-.|-.|+..
T Consensus 37 ~~ndG~lNRa~v~VQ~NV-------~~ld~n~~~~~~kine~vd~vn~I~~~L~~~gD~~~i~qv~~n--~~dI~~lk~~ 107 (454)
T PHA02607 37 TGNDGSLNRAGVNVQKNV-------EQLDENTKKTKDKINEVVDDVNTIQENLDVIGDISVIDQINQN--VADIEVLKKD 107 (454)
T ss_pred cCCCcccccchhHHHHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHhhh--HHHHHHHHHH
Confidence 445666776666666654 4677888888899988887777655441100111112244443 3456678999
Q ss_pred HHHHHhHHHHHHhHhhhhhhhHH--------hhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhHH
Q 000113 1791 IEELEHTVNALEKKVYEMNGEVE--------RHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQ 1862 (2159)
Q Consensus 1791 veele~tin~LE~kV~~~k~e~~--------r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~ 1862 (2159)
+.+....+.-+...|+.+...+= -+|.+|.+|. =+|++|-.-+||+-+-.+. ||-+.++|+++..
T Consensus 108 ~~~~~~~l~~~~~~~~~~~~~iG~~~p~~d~~~rTVr~di~----~IK~elG~y~g~diNG~p~---p~s~gtGmK~ri~ 180 (454)
T PHA02607 108 VSDTTDKLAGTTNEVDEIEADIGVFNPEADPVTRTIRNDIL----WIKTELGAYPGFDINGNPD---PGSTGTGMKYRII 180 (454)
T ss_pred HHHHHHHHhhhhhhHHHHHHhcCCcCcccCCCccchhhhHH----HHHHHhccCCCCCCCCCcC---CCCCCCceeeehh
Confidence 99998888888888888887764 4788888863 4899999999998755544 4667889999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHhhhhhhhhhhHHH-HHHHHHHHHHHHHH
Q 000113 1863 DRLLQLQEAHHRIQLLEREKEEQN--EEIKRCKDYLSEVVLHSEAQ-ASQYQQKYKTLEAM 1920 (2159)
Q Consensus 1863 ~~~~~l~~a~~~i~~l~~~~~~k~--~ei~q~k~~isel~lh~eaq-a~~y~~k~k~lEaM 1920 (2159)
.--.++-.-..+|..||..-++-| .-..+..+-=+||==|+.|. -.-|. ..++||-=
T Consensus 181 ~n~~~~~~~~~Ri~~LE~~~~~sdVg~Lt~~v~~lR~ElG~~~~at~~~iY~-RL~~lE~~ 240 (454)
T PHA02607 181 DNTTALVDHGQRITELENDWADSDVGQLTREVNDLRAELGPSSLATGEPIYT-RLNTLEDA 240 (454)
T ss_pred hhHHHHHhhhhHHHHHHhhhhhcCchHHHHHHHHHHHHhCCCCcccCccHHH-HHHHHhhh
Confidence 888888888888888888765432 22233333335555566665 33333 33444433
No 397
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.14 E-value=1.2e+03 Score=31.11 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=60.8
Q ss_pred HHHhhhhChH-HHHHHH--HHHHHHHHHHHHH-HHhh-hhHHHHHHHHHHHHHHHHHH---Hhhccccccccc-------
Q 000113 666 LQARIDRNPE-LTRFAL--ENIRLLEQLQLFQ-SFYE-QGEREKLLAELAELRDQLLD---IVEGKERFSSRH------- 730 (2159)
Q Consensus 666 Lq~~~d~~~E-v~~~~~--En~~L~eel~~~~-~f~~-~gere~l~~ei~~Lr~ql~~---~~~~~~~~~~~~------- 730 (2159)
|....++.|. |-|++- -.+++-.-+|+.. ..|. .||+..|..|+-.+..+|.. +.+.-+..+.++
T Consensus 371 Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~a 450 (521)
T KOG1937|consen 371 LRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLA 450 (521)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHH
Confidence 4444554443 334332 2334444444443 2443 37888888888888887722 111111112211
Q ss_pred ---chhhhhhHHHHHHHHhhhhHHHHHHHHHHHHhhhc
Q 000113 731 ---ENQENDTTTELENCRNMNSKLMREVEELRTELRNC 765 (2159)
Q Consensus 731 ---~~~~~~~~~~~~~c~~~~~~l~r~~~~~~~~~~~~ 765 (2159)
-..+-....++-.|.+++..+.|+|.+|..++.-+
T Consensus 451 ykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E 488 (521)
T KOG1937|consen 451 YKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVE 488 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHH
Confidence 23566777899999999999999999999998854
No 398
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=36.03 E-value=2.9e+02 Score=32.88 Aligned_cols=69 Identities=23% Similarity=0.333 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHhhhhhhhhh-------hHHHHHHHHHHHHHHHHHHHHhhc
Q 000113 1858 SRKLQDRLLQLQEAHHRIQLLEREK----EEQNEEIKRCKDYLSEVVLH-------SEAQASQYQQKYKTLEAMIREMQT 1926 (2159)
Q Consensus 1858 ~r~~~~~~~~l~~a~~~i~~l~~~~----~~k~~ei~q~k~~isel~lh-------~eaqa~~y~~k~k~lEaM~~~~k~ 1926 (2159)
.+.|......-...+.+|..|+.++ .+|+.+|..+.+-|..+.+- -+.+..-|+.+.+.||.-.....+
T Consensus 74 Y~~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~~~n~ 153 (196)
T PF15272_consen 74 YQELKKSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLNSRNN 153 (196)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555555666777888888776 78888888888888776665 566777899999999999884443
No 399
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=35.96 E-value=12 Score=46.23 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=51.2
Q ss_pred EeecccCCCcceeec----c----ccccccCCCCCCCCChhHHHHHHHHHHHHHHhhh--cccc----------ceEEEE
Q 000113 240 FAYGQTGSGKTYTMM----G----EINEVEGKLNDDCGITPRIFEYLFSRIRMEEENR--RDER----------LKFSCK 299 (2159)
Q Consensus 240 FAYGQTGSGKTYTM~----G----~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~--~~~~----------~~fsVk 299 (2159)
..||+|||||++-+- + +..+.---..+..|+||-.=...+.. +.-+.+. +.++ .+| |.
T Consensus 91 ~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~-Ql~EgNY~~~~~gTi~P~t~t~~P~F-v~ 168 (369)
T PF02456_consen 91 VVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWET-QLCEGNYDCGPDGTIVPQTGTFRPKF-VE 168 (369)
T ss_pred EEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHH-HHHhcCCCCCCCCeeccccccccccc-ee
Confidence 459999999998653 1 11111111245678888754443332 1111111 1111 122 66
Q ss_pred EeeeeeecccccccCCCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHh
Q 000113 300 CSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQ 353 (2159)
Q Consensus 300 vSflEIYNEkI~DLL~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~ 353 (2159)
+||-|.-.+.=+|.=+|.+ +..+-..+|-+.|- .+|+|+-|-.
T Consensus 169 msy~e~t~~~NldI~~p~N--iF~~Aa~~GPiaII---------mDECMe~Lg~ 211 (369)
T PF02456_consen 169 MSYDEATSPENLDITNPNN--IFAQAAKKGPIAII---------MDECMEKLGS 211 (369)
T ss_pred ecHhhhCCccccCCCCchH--HHHHHHhcCCEEEE---------hHHHHHHhcC
Confidence 7777777777777765542 33333333333332 5677776643
No 400
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=35.88 E-value=21 Score=40.98 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=24.6
Q ss_pred hchhHHHHhhcC---CCceeEeecccCCCcceee
Q 000113 223 AGLPMVENCLSG---YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 223 v~~PLV~~vLeG---yN~TIFAYGQTGSGKTYTM 253 (2159)
++-|-+|.++.| ...++.-||++|||||.-+
T Consensus 3 tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 3 TGSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CCchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 455778888886 3667889999999999765
No 401
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.83 E-value=4.1e+02 Score=29.38 Aligned_cols=95 Identities=19% Similarity=0.273 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHH
Q 000113 1593 DETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHL 1672 (2159)
Q Consensus 1593 De~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L 1672 (2159)
--++.+-++|..++-|+..=-.++..+-.....|..+|.. ++..-+.+...+.+...|+..++++-..-..+=+.|
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~----l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVK----LMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888888877777777777777777666654 444456667778888888999998888888888888
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 000113 1673 EEQKEVITGLEKEILHRTS 1691 (2159)
Q Consensus 1673 ~e~~~vie~LE~eil~l~s 1691 (2159)
=||.+-++-|...|..|-.
T Consensus 92 GEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 92 GEKSEEVEELRADVQDLKE 110 (120)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 8999888888888875543
No 402
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=35.81 E-value=16 Score=48.06 Aligned_cols=43 Identities=23% Similarity=0.445 Sum_probs=26.0
Q ss_pred eEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHH
Q 000113 239 MFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIR 283 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~ 283 (2159)
||..|+|+|||||--.--..... ..--+|=+-.....+|++.+
T Consensus 194 i~H~GPTNSGKTy~ALqrl~~ak--sGvycGPLrLLA~EV~~r~n 236 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLKSAK--SGVYCGPLRLLAHEVYDRLN 236 (700)
T ss_pred EEEeCCCCCchhHHHHHHHhhhc--cceecchHHHHHHHHHHHhh
Confidence 89999999999998654321110 01123434445566777764
No 403
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=35.57 E-value=1e+03 Score=30.21 Aligned_cols=90 Identities=23% Similarity=0.351 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHH--HHHHHHHhhhhhhh------hhhHHHHH
Q 000113 1715 DKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAV--EARQELEASKLYAE------QKEEEVKI 1786 (2159)
Q Consensus 1715 ~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~--ea~q~ae~~k~yae------~keeevk~ 1786 (2159)
.+-+..++.|+..|+.+-.|..+|..|.+.|+..-. -.+|.|.--| =++|-++|+.-.|. .|-||...
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~----~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~r 231 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETD----TYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRR 231 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh----hccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Confidence 444566889999999999999999999888774332 3444444333 46777777766664 34444555
Q ss_pred HHHhHHHHHhHHHHHHhHhhhh
Q 000113 1787 LEHSIEELEHTVNALEKKVYEM 1808 (2159)
Q Consensus 1787 le~sveele~tin~LE~kV~~~ 1808 (2159)
...-|.-|=+.|.-|++++-.+
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666666554443
No 404
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=35.47 E-value=64 Score=41.05 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=42.1
Q ss_pred eeE-ec-eecCCCCChHHHHHhhchhHHHHhhcCC---CceeEeecccCCCccee---------------------eccc
Q 000113 203 RFT-FD-HIACEMISQEKLFRVAGLPMVENCLSGY---NSCMFAYGQTGSGKTYT---------------------MMGE 256 (2159)
Q Consensus 203 ~Ft-FD-~VFde~aSQEeVFe~v~~PLV~~vLeGy---N~TIFAYGQTGSGKTYT---------------------M~G~ 256 (2159)
+|. |+ .||| ++++-+.++ .-+.....|. +--+.=.|++|||||.. +-|+
T Consensus 45 ~y~~F~~~~~G----~~~~i~~lv-~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~ 119 (361)
T smart00763 45 RYRFFDHDFFG----MEEAIERFV-NYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWN 119 (361)
T ss_pred eccccchhccC----cHHHHHHHH-HHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEec
Confidence 454 45 6776 455555555 3444444553 35578899999999843 3331
Q ss_pred cccccCCCCCCCCChhHHHHHHHH
Q 000113 257 INEVEGKLNDDCGITPRIFEYLFS 280 (2159)
Q Consensus 257 ~~~~~g~~~e~~GIIPRale~LF~ 280 (2159)
.- .......-.|++|...+..|.
T Consensus 120 ~~-~sp~~e~Pl~l~p~~~r~~~~ 142 (361)
T smart00763 120 GE-ESPMHEDPLHLFPDELREDLE 142 (361)
T ss_pred CC-CCCCccCCcccCCHHHHHHHH
Confidence 10 011223345999999998884
No 405
>PRK06547 hypothetical protein; Provisional
Probab=35.35 E-value=23 Score=40.07 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=17.2
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..+..+.---|.-+|.+|||||+.-
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34444344444566799999999864
No 406
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=35.15 E-value=17 Score=48.16 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=19.1
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
|..+++|.| |++.++||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 345778987 667889999999874
No 407
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=35.04 E-value=17 Score=47.04 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=21.9
Q ss_pred cCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhh
Q 000113 464 LGGNSKTTIIANVSPSMCSANETLSTLKFAQRAK 497 (2159)
Q Consensus 464 LGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK 497 (2159)
+.--.+..+|+|.+....+ +..|.+|-|=|
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRR 349 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRR 349 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhh
Confidence 4456789999999998754 44677776654
No 408
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=34.53 E-value=15 Score=40.36 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=11.7
Q ss_pred eEe-ecccCCCccee
Q 000113 239 MFA-YGQTGSGKTYT 252 (2159)
Q Consensus 239 IFA-YGQTGSGKTYT 252 (2159)
|++ .|+||+||||+
T Consensus 55 VlSfHG~tGtGKn~v 69 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFV 69 (127)
T ss_pred EEEeecCCCCcHHHH
Confidence 544 69999999997
No 409
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.41 E-value=1e+03 Score=29.75 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLW 1739 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~ 1739 (2159)
-+...+.|-.+..+......|.-.|.
T Consensus 192 k~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 192 KAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44555555555555555555555444
No 410
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=34.18 E-value=4.5e+02 Score=27.62 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHH
Q 000113 1593 DETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKD 1660 (2159)
Q Consensus 1593 De~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~ 1660 (2159)
.|+..+-.+...+...+..|-.++..+=..-..|+++.+.-....+++....+.+-.+|.-|+.++.-
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 36667777888888888888888777766777889999988889999999999999999998887763
No 411
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.15 E-value=18 Score=45.03 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=25.3
Q ss_pred EeceecCCCCChHHHHHhhchhHHHHhhcC-CCceeEeecccCCCcceee
Q 000113 205 TFDHIACEMISQEKLFRVAGLPMVENCLSG-YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 205 tFD~VFde~aSQEeVFe~v~~PLV~~vLeG-yN~TIFAYGQTGSGKTYTM 253 (2159)
+|+.|. .|+.+-.. +...+-.| ..-.++=||+.|+|||++.
T Consensus 14 ~~~~ii----Gq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDII----GQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhcc----ChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 355554 45555432 33333344 3345789999999999876
No 412
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=34.06 E-value=1.2e+03 Score=30.51 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhh---------hhHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 000113 1715 DKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALAD---------ENEAIAVEARQELEASKLYAEQKEEEVK 1785 (2159)
Q Consensus 1715 ~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~---------e~eaia~ea~q~ae~~k~yae~keeevk 1785 (2159)
+.....+..++..+..+..++..++..+-.|+.++.-....+. =..-++.--.|.++.+..|-++ --.|+
T Consensus 200 ~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~-hP~v~ 278 (498)
T TIGR03007 200 GDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDK-HPDVI 278 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhccc-ChHHH
Confidence 3455667777788888888888888777777776653111100 0011222234556666777655 46778
Q ss_pred HHHHhHHHHHhHHHHHH
Q 000113 1786 ILEHSIEELEHTVNALE 1802 (2159)
Q Consensus 1786 ~le~sveele~tin~LE 1802 (2159)
-|.+.++.|+.-+....
T Consensus 279 ~l~~qi~~l~~~l~~~~ 295 (498)
T TIGR03007 279 ATKREIAQLEEQKEEEG 295 (498)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88887777777665543
No 413
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=33.94 E-value=46 Score=41.71 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=22.6
Q ss_pred hhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 225 LPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 225 ~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.+++..++.+ .+.|+--|.||||||.+|-
T Consensus 168 ~~~L~~~v~~-~~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 168 ARLLRAIVAA-RLAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHhC-CCeEEEECCCCCCHHHHHH
Confidence 3566666665 4789999999999998774
No 414
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=33.78 E-value=27 Score=47.35 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=26.5
Q ss_pred HHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 218 KLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 218 eVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.||..+-.....-+-.|.|-||+.-|.+|||||.|.
T Consensus 74 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 74 HVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 356544443333344689999999999999999996
No 415
>PF13166 AAA_13: AAA domain
Probab=33.72 E-value=1.1e+03 Score=32.36 Aligned_cols=66 Identities=29% Similarity=0.284 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 000113 1722 ESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKIL 1787 (2159)
Q Consensus 1722 ~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~l 1787 (2159)
..+..++.....+...+..++-.+..++..+.......++-..+.++..-..+.|++.=-++.+.+
T Consensus 406 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 406 AKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 333344444444444444455555555554444444444333333333333466666666777776
No 416
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=33.58 E-value=28 Score=47.06 Aligned_cols=42 Identities=19% Similarity=0.016 Sum_probs=28.1
Q ss_pred cCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 210 ACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 210 Fde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
|.++..|+.++..+. .+.-.|+...++..|+||||||.+..-
T Consensus 260 f~lt~~Q~~ai~~I~----~d~~~~~~~~~Ll~~~TGSGKT~va~~ 301 (681)
T PRK10917 260 FELTGAQKRVVAEIL----ADLASPKPMNRLLQGDVGSGKTVVAAL 301 (681)
T ss_pred CCCCHHHHHHHHHHH----HhhhccCCceEEEECCCCCcHHHHHHH
Confidence 456666766654433 333345556789999999999987654
No 417
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=33.30 E-value=23 Score=46.69 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=27.8
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
-+|+.+++.. ..- ..+...++.+....|+=||++|+|||+.-
T Consensus 62 ~~f~~iiGqs----~~i----~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQE----EGI----KALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcH----HHH----HHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 4577777654 222 23333455666777888999999999764
No 418
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=33.27 E-value=26 Score=40.01 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=23.4
Q ss_pred hchhHHHHhhc-CCC--ceeEeecccCCCcceee
Q 000113 223 AGLPMVENCLS-GYN--SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 223 v~~PLV~~vLe-GyN--~TIFAYGQTGSGKTYTM 253 (2159)
++-|=++.++. |+. ..+.-+|.+|||||...
T Consensus 3 TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 3 TGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred cchhHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 34566888886 543 44789999999999875
No 419
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.21 E-value=97 Score=29.81 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=29.7
Q ss_pred HHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHh
Q 000113 1770 LEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVER 1814 (2159)
Q Consensus 1770 ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r 1814 (2159)
.+|...|-+-|...+.-||..|..|+.....|...+..++.++..
T Consensus 14 R~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 14 REAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777777776666666666665544
No 420
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=33.16 E-value=25 Score=40.39 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=23.7
Q ss_pred hchhHHHHhhc-CC--CceeEeecccCCCcceee
Q 000113 223 AGLPMVENCLS-GY--NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 223 v~~PLV~~vLe-Gy--N~TIFAYGQTGSGKTYTM 253 (2159)
++-|-++.++. |+ ..++.-+|++|||||+..
T Consensus 4 tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 4 TGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred CChhhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 34566788874 54 667888999999998865
No 421
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=33.11 E-value=15 Score=49.83 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.3
Q ss_pred CceeEeecccCCCcceeec
Q 000113 236 NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~ 254 (2159)
|..++..|.||||||++|-
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 5567889999999999983
No 422
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=33.08 E-value=29 Score=41.47 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=18.0
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceee
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.++..+..|.+. +-+|++|+|||...
T Consensus 13 ~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 344455556544 55899999999864
No 423
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=33.04 E-value=19 Score=48.92 Aligned_cols=51 Identities=25% Similarity=0.436 Sum_probs=31.0
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHH-HhhcCC----CceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVE-NCLSGY----NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~-~vLeGy----N~TIFAYGQTGSGKTYTM 253 (2159)
.++||.|.+....=+.+.+.+..|+-. .++..+ ...|+-||++|||||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 478888776544444555444444321 222222 246889999999999765
No 424
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=32.99 E-value=27 Score=44.79 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=15.0
Q ss_pred CceeEeecccCCCcceee
Q 000113 236 NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM 253 (2159)
.+-|.=.||||.|||.|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 455666799999999998
No 425
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=32.96 E-value=31 Score=43.41 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=23.1
Q ss_pred hhHHHHhhcCCC---ceeEeecccCCCcceeecc
Q 000113 225 LPMVENCLSGYN---SCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 225 ~PLV~~vLeGyN---~TIFAYGQTGSGKTYTM~G 255 (2159)
-|.+...|.|.- -||| .|+||||||.-|.-
T Consensus 260 FpvLNk~LkGhR~GElTvl-TGpTGsGKTTFlsE 292 (514)
T KOG2373|consen 260 FPVLNKYLKGHRPGELTVL-TGPTGSGKTTFLSE 292 (514)
T ss_pred hhHHHHHhccCCCCceEEE-ecCCCCCceeEehH
Confidence 488899999874 3555 49999999987743
No 426
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=32.82 E-value=20 Score=43.35 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=20.3
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
+++..+.. +-.|+-+|+||||||-++..
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHHh
Confidence 34444433 56779999999999998754
No 427
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=32.79 E-value=22 Score=44.39 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=14.1
Q ss_pred eEeecccCCCcceeec
Q 000113 239 MFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM~ 254 (2159)
++..|.||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 6789999999999874
No 428
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.79 E-value=5.1e+02 Score=27.30 Aligned_cols=101 Identities=21% Similarity=0.340 Sum_probs=65.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHH
Q 000113 1646 TLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVE 1725 (2159)
Q Consensus 1646 ~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 1725 (2159)
.+..+-+.|+..++.+...++.++.++.|...|++-|+. +. .|.++.-.+-.+.= .+.+-.=...+...++.++
T Consensus 3 ~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~----l~-~d~~vy~~VG~vfv-~~~~~ea~~~Le~~~e~le 76 (105)
T cd00632 3 EQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEK----LA-DDAEVYKLVGNVLV-KQEKEEARTELKERLETIE 76 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CC-CcchHHHHhhhHHh-hccHHHHHHHHHHHHHHHH
Confidence 456677889999999999999999999999999886653 21 12222222211000 0111111445556667777
Q ss_pred HHHHHHhhhhhhhHHHHHhhHHHHHHH
Q 000113 1726 EELRKVSKERDKLWVEICSLNDKLAMA 1752 (2159)
Q Consensus 1726 ~~l~~~~~Erd~l~~e~~~l~~kle~a 1752 (2159)
..++.+...-+.++.++-.++.+|...
T Consensus 77 ~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 77 LRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777788888887777777643
No 429
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=32.66 E-value=26 Score=43.75 Aligned_cols=89 Identities=24% Similarity=0.411 Sum_probs=54.1
Q ss_pred EEEEEeCCCCChhcccCCceeEEecCCCceE---------EE-cCC-CCceeEeceecCCCCChHHHHHhhchhHHHHhh
Q 000113 164 QVLIRIRPLSNIEKVSQGYVRCLKQDTAQTL---------VW-LGH-PETRFTFDHIACEMISQEKLFRVAGLPMVENCL 232 (2159)
Q Consensus 164 rV~VRVRPls~~E~~s~g~~~cv~~~s~~ti---------v~-~g~-p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vL 232 (2159)
+-+|++|--.+.+....|....+.+.....- ++ ..+ ....|+|++|-+-..-=.++-+.+..|+++..+
T Consensus 78 ryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~l 157 (388)
T KOG0651|consen 78 RYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPEL 157 (388)
T ss_pred cEEEEcccccchhhhccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchh
Confidence 3348888877766666665444432221100 00 011 123488999877664445677778889988766
Q ss_pred c---CCC--ceeEeecccCCCccee
Q 000113 233 S---GYN--SCMFAYGQTGSGKTYT 252 (2159)
Q Consensus 233 e---GyN--~TIFAYGQTGSGKTYT 252 (2159)
- |.- -.+.-||+.|+|||+-
T Consensus 158 f~rvgIk~Pkg~ll~GppGtGKTll 182 (388)
T KOG0651|consen 158 FLRVGIKPPKGLLLYGPPGTGKTLL 182 (388)
T ss_pred ccccCCCCCceeEEeCCCCCchhHH
Confidence 3 332 2367899999999974
No 430
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.56 E-value=16 Score=46.75 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=15.3
Q ss_pred ceeEeecccCCCcceeecc
Q 000113 237 SCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G 255 (2159)
.+|+-.|+||+|||+|+..
T Consensus 222 ~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3566679999999999854
No 431
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=32.52 E-value=16 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=18.7
Q ss_pred CCCceeEeecccCCCcceeecc
Q 000113 234 GYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM~G 255 (2159)
+-|+..|-.|+||||||++|-.
T Consensus 473 ~~n~n~~I~G~TGSGKS~l~~~ 494 (893)
T TIGR03744 473 KKNAHLLILGPTGAGKSATLTN 494 (893)
T ss_pred CCcccEEEECCCCCCHHHHHHH
Confidence 3488899999999999999843
No 432
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=32.27 E-value=11 Score=51.08 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=16.9
Q ss_pred CceeEeecccCCCcceee
Q 000113 236 NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM 253 (2159)
|+.++-.|.||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 788999999999999998
No 433
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=32.19 E-value=2e+02 Score=29.08 Aligned_cols=67 Identities=25% Similarity=0.316 Sum_probs=56.2
Q ss_pred HHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 000113 1626 LEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSE 1692 (2159)
Q Consensus 1626 LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~ 1692 (2159)
|+.-|+++...|....+.-..||.....++..|+-+=+...+.+..+.+-++=++.++.++-.|...
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777888899999999999999999999999999999998888888888877654
No 434
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.89 E-value=2.8e+02 Score=38.73 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=60.9
Q ss_pred HHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHH
Q 000113 1569 VLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVI 1639 (2159)
Q Consensus 1569 ~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~ 1639 (2159)
.+++-+-|+-.++...-+...+.+.+.++++..|++.+.+++.+..+++......+.+..+|.+....+..
T Consensus 487 ~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 487 EIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888899999999888899999999999999999999999999999888888887777766666655
No 435
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.88 E-value=2.6e+02 Score=33.25 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=29.6
Q ss_pred hhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000113 1640 AKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKE 1677 (2159)
Q Consensus 1640 ~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~ 1677 (2159)
+...+..|-.+|..|+..+..+-.+...++.++++.++
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678889999999998888877777888777665
No 436
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=31.75 E-value=1.7e+03 Score=31.63 Aligned_cols=279 Identities=20% Similarity=0.230 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Q 000113 1595 TEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEE 1674 (2159)
Q Consensus 1595 ~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e 1674 (2159)
+++-+.--++.+.|...=-.+||.++.++-.+|.+++-..+||.-+-.-+-..-.|.. ..|.|++++++.-
T Consensus 12 aeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~e---q~i~~~~~~~s~e------ 82 (769)
T PF05911_consen 12 AEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQE---QKIHEAVAKKSKE------ 82 (769)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHH---HHHHHHHHHHhHH------
Confidence 4566677788888877666899999999999999999999998764333333333322 2345555555321
Q ss_pred HHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHH
Q 000113 1675 QKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYA 1754 (2159)
Q Consensus 1675 ~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a 1754 (2159)
..++--.||..|.+++.- |.+ ...+-..+..++..-..-+-++..+|.+...|+..|..+|+.+.
T Consensus 83 ~e~~~~~le~~l~e~~~~---l~~-----------~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~e- 147 (769)
T PF05911_consen 83 WEKIKSELEAKLAELSKR---LAE-----------SAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTE- 147 (769)
T ss_pred HHHHHHHHHHHHHHHHHH---HHH-----------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-
Confidence 111222233333332211 111 11124455555666666777777788888888888888777543
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHh-HHHHHhHHHHHHhHhhhhhhhHHhhhhh-Hhh---------HH
Q 000113 1755 LADENEAIAVEARQELEASKLYAEQKEEEVKILEHS-IEELEHTVNALEKKVYEMNGEVERHHLI-RDS---------LE 1823 (2159)
Q Consensus 1755 ~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~s-veele~tin~LE~kV~~~k~e~~r~r~~-r~~---------le 1823 (2159)
.||=+.=.|.+=..+.-.|-.++++=-.+--|-+ ---||+. +||--|..|-.|-|.. |.. ..
T Consensus 148 --ken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~v-----kkiakLEaEC~rLr~l~rk~lpgpaa~a~mk 220 (769)
T PF05911_consen 148 --KENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESV-----KKIAKLEAECQRLRALVRKKLPGPAALAQMK 220 (769)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCCChHHHHHhH
Confidence 3444444455544444444444444333332221 1224432 2444444466665543 221 11
Q ss_pred HHHHHHHH---hhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhh
Q 000113 1824 LEIQALRR---RLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVV 1900 (2159)
Q Consensus 1824 ~e~~~~~~---~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~ 1900 (2159)
.|+..+.+ .+-..+|.+....... .-....+..+..+..|-..+-..++|.+.+|+.++-=|
T Consensus 221 ~ev~~~~~~~~~~r~r~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~ 285 (769)
T PF05911_consen 221 NEVESLGRDSGENRRRRSPSRPSSPHD---------------FSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKN 285 (769)
T ss_pred HHHHHhccccccccCCCCCCccccccc---------------ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222210 0000111111000000 00122244566667777777777777777777776543
Q ss_pred hhhHHHHHHHH-----HHHHHHHHHH
Q 000113 1901 LHSEAQASQYQ-----QKYKTLEAMI 1921 (2159)
Q Consensus 1901 lh~eaqa~~y~-----~k~k~lEaM~ 1921 (2159)
+|-|++..+ -|...||+=.
T Consensus 286 --~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 286 --SELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556665432 3556666655
No 437
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=31.73 E-value=17 Score=46.16 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=15.8
Q ss_pred CceeEeecccCCCcceeec
Q 000113 236 NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~ 254 (2159)
+-.++.+|.||||||..|.
T Consensus 42 ~~h~~i~g~tGsGKt~~i~ 60 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIR 60 (410)
T ss_pred hccEEEEcCCCCCHHHHHH
Confidence 4568999999999998763
No 438
>CHL00176 ftsH cell division protein; Validated
Probab=31.71 E-value=20 Score=48.20 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=28.5
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhh------cCCCceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCL------SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vL------eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.++|+.|.+-+...+++- .++.. ++.-- ......|+-||++|+|||+..
T Consensus 179 ~~~f~dv~G~~~~k~~l~-eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFE-EVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCHHhccChHHHHHHHH-HHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 478888887653333332 22211 11111 112335899999999999986
No 439
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=31.64 E-value=6.7e+02 Score=30.18 Aligned_cols=104 Identities=24% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-------hhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcchhHH
Q 000113 954 EMEATKTILQLQEEVASLQLELHENLCCMTEENTC-------LRNTIAAKEEEIRSRCTEWEKATLELTNFLADGSRSLR 1026 (2159)
Q Consensus 954 E~et~~~I~~lqeel~~lq~e~~~~~~~~~~e~~~-------L~~~~~~ke~Ei~~l~~ewe~~t~el~~~L~dG~~sl~ 1026 (2159)
+..|.+-+|.+-+.|..+-.++-+-+.+-.+.-+. +-.++..||.|++.|-+.- .|-...
T Consensus 6 ~~StrerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla----~eq~k~--------- 72 (272)
T KOG4552|consen 6 ERSTRERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLA----PEQQKR--------- 72 (272)
T ss_pred cccHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHh----HhHHHH---------
Q ss_pred HhhhhhhhhhccCCCCchhhhHHHHHHHHHhhhh-HHHHHHHHHhHHHHHHH----HHHHHHHHhhhhHH
Q 000113 1027 DASGQIESIVCLFPQFNVEVTENVGRAAKVCIEK-DETILLLQKSLEEAQKM----VVEMKEKCISLKGA 1091 (2159)
Q Consensus 1027 dAs~qi~~I~~SFP~~~~wIsEhV~~a~r~~iEK-E~~I~~Lq~~LEdA~~m----~~dme~kL~SLrgA 1091 (2159)
||.=+-.+.-.|| +..|++||+.|++|--. .--...||+|.+.|
T Consensus 73 ---------------------e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A 121 (272)
T KOG4552|consen 73 ---------------------EQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEA 121 (272)
T ss_pred ---------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 440
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=31.49 E-value=9.7e+02 Score=28.67 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=11.9
Q ss_pred hhhhhhHHhhhhHHHHHHHHHHHH
Q 000113 1640 AKGTIDTLSDQNADLRVLLKDLYL 1663 (2159)
Q Consensus 1640 ~~~~~~~ls~eN~eLr~~l~~~~~ 1663 (2159)
.+..+..+..+|..|+..+++++.
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555444
No 441
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=31.46 E-value=17 Score=38.12 Aligned_cols=17 Identities=41% Similarity=0.737 Sum_probs=13.7
Q ss_pred eEeecccCCCcceeecc
Q 000113 239 MFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM~G 255 (2159)
+.-||++|+|||+....
T Consensus 2 ~~i~G~~G~GKT~l~~~ 18 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ 18 (165)
T ss_pred eeEeCCCCCCHHHHHHH
Confidence 45699999999997643
No 442
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=31.29 E-value=27 Score=45.56 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=18.5
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.| +++-.+||||||.+.
T Consensus 152 ip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 152 IPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHhcCCC--EEEEecCCCCccHHH
Confidence 455678875 678889999999764
No 443
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=31.11 E-value=19 Score=47.32 Aligned_cols=14 Identities=43% Similarity=0.857 Sum_probs=12.6
Q ss_pred eeEeecccCCCcce
Q 000113 238 CMFAYGQTGSGKTY 251 (2159)
Q Consensus 238 TIFAYGQTGSGKTY 251 (2159)
.|+-||+.|+|||-
T Consensus 258 GiLLyGPPGTGKTL 271 (744)
T KOG0741|consen 258 GILLYGPPGTGKTL 271 (744)
T ss_pred eEEEECCCCCChhH
Confidence 38899999999996
No 444
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.03 E-value=1.1e+02 Score=33.33 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=39.6
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhH
Q 000113 2073 CTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISELD 2123 (2159)
Q Consensus 2073 ~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd 2123 (2159)
..+-+.+=...+.+..-.++.|.+.-+-|..||--|++||.+|++++.++.
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444555555666788888889999999999999999999999874
No 445
>PF05729 NACHT: NACHT domain
Probab=30.94 E-value=19 Score=38.14 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=14.6
Q ss_pred eeEeecccCCCcceeec
Q 000113 238 CMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~ 254 (2159)
.++-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 46789999999999874
No 446
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=30.87 E-value=31 Score=43.01 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=21.7
Q ss_pred HHhhcCCCceeEeecccCCCcceeecc
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
+.+.+|.+..+|..++||||||...+-
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~~~ 33 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAWLT 33 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHHHH
Confidence 445678888899999999999987543
No 447
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.76 E-value=2.1e+03 Score=32.25 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=52.2
Q ss_pred HHHHhhhhchhhHHHH---hhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHhhhcccc
Q 000113 1624 EKLEASLTDTENALVI---AKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQK-------EVITGLEKEILHRTSED 1693 (2159)
Q Consensus 1624 ~~LE~~L~d~~~al~~---~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~-------~vie~LE~eil~l~s~~ 1693 (2159)
-.+|..|.+..++|.+ +.+.++.++..-.+||.+|.+.-.....+|+-|.+-. +-.++|+.+-.-|+.+-
T Consensus 1204 ~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~ 1283 (1758)
T KOG0994|consen 1204 LDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTY 1283 (1758)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHH
Confidence 3456666677777755 7788999999999999999988888888888777532 45677777766666553
Q ss_pred h
Q 000113 1694 K 1694 (2159)
Q Consensus 1694 ~ 1694 (2159)
|
T Consensus 1284 k 1284 (1758)
T KOG0994|consen 1284 K 1284 (1758)
T ss_pred H
Confidence 3
No 448
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=30.69 E-value=34 Score=39.12 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=24.8
Q ss_pred hchhHHHHhhcCC---CceeEeecccCCCcceeec
Q 000113 223 AGLPMVENCLSGY---NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 223 v~~PLV~~vLeGy---N~TIFAYGQTGSGKTYTM~ 254 (2159)
++-|-++.++.|. ...+-=||++|||||..+.
T Consensus 3 tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 3 TGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 4567888988653 5567889999999998664
No 449
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=30.66 E-value=95 Score=29.11 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=29.0
Q ss_pred HHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhh
Q 000113 1770 LEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGE 1811 (2159)
Q Consensus 1770 ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e 1811 (2159)
-+|++-|-+-|-..+.-||..|..|+..+..|..+|..|+.|
T Consensus 13 r~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 13 REAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355666667777777777777777777777777776666543
No 450
>PF14992 TMCO5: TMCO5 family
Probab=30.54 E-value=4.9e+02 Score=32.51 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 000113 1673 EEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVE 1741 (2159)
Q Consensus 1673 ~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e 1741 (2159)
.++-..|-+||.||..+.-. + ++.+..+..+++-+.+|.++--+.|.|+.+
T Consensus 28 ~~~E~~iq~Le~Eit~~~~~-------~-----------~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ 78 (280)
T PF14992_consen 28 QEKEGAIQSLEREITKMDHI-------A-----------DRSEEEDIISEERETDLQELELETAKLEKE 78 (280)
T ss_pred HHHHHHHHHHHHHHHHHccc-------c-----------CchhHHhhhhhchHHHHHHHHhhhHHHhhh
Confidence 34556789999999987765 2 334555666677777777776666666543
No 451
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.43 E-value=4.3e+02 Score=29.54 Aligned_cols=82 Identities=23% Similarity=0.393 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHh----hhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHh
Q 000113 1715 DKLCEEVESVEEELRKVS----KERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHS 1790 (2159)
Q Consensus 1715 ~~~~~~v~~l~~~l~~~~----~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~s 1790 (2159)
.-|.+++.++-..|.+|+ .-|++|..-|-.|-.||+...++.....--..++|--. ++=..+|+-+.+-
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv-------~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDV-------SQIGDDVDSVQQM 111 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHH
Confidence 445566666666665544 45888889999999999988887776665555555432 2334567777777
Q ss_pred HHHHHhHHHHHHh
Q 000113 1791 IEELEHTVNALEK 1803 (2159)
Q Consensus 1791 veele~tin~LE~ 1803 (2159)
|+-||..|+-||.
T Consensus 112 V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 112 VEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777664
No 452
>PF13514 AAA_27: AAA domain
Probab=30.42 E-value=2e+03 Score=31.93 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=38.3
Q ss_pred cchhhhhchHHHHHhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHhh
Q 000113 1328 HASSFFSKFEEARETMREADSMLNTLLKANENAKQLNDKWRQAGEQLMADRASLTDEVEQLKFLIRLK 1395 (2159)
Q Consensus 1328 ea~~~l~KFEEAqaTmkEAD~mlnaL~~ANE~~K~~~~~~Kq~~e~l~~Ek~~L~~evq~Lks~i~~k 1395 (2159)
.....+..|.+++..+++++... ......+...+...+.-..+-.+...+-.+...|+.+..+-
T Consensus 151 ~in~~l~~l~e~~~~l~~~~~~~----~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~ 214 (1111)
T PF13514_consen 151 EINQALKELKELERELREAEVRA----AEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAW 214 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455678888888888887743 34444455555555555555556666666555555554443
No 453
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=30.40 E-value=24 Score=47.43 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=16.0
Q ss_pred ceeEeecccCCCcceeecc
Q 000113 237 SCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G 255 (2159)
..++-+|++|||||||+..
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred CeEEEEcCCCCCHHHHHHH
Confidence 3467999999999999864
No 454
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=30.18 E-value=17 Score=47.79 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=30.5
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHH-hhc--CC--CceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVEN-CLS--GY--NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~-vLe--Gy--N~TIFAYGQTGSGKTYTM 253 (2159)
.+|+.|-+-...-+.+.+.+..|+... .+. |. -..|+-||++|+|||++.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHH
Confidence 456776655544455666665555432 222 21 234788999999999865
No 455
>PRK10865 protein disaggregation chaperone; Provisional
Probab=30.08 E-value=28 Score=48.45 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=26.3
Q ss_pred eceecCCCCChHHHHHhhchhHHHHhhcCCC------ceeEeecccCCCcceee
Q 000113 206 FDHIACEMISQEKLFRVAGLPMVENCLSGYN------SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 206 FD~VFde~aSQEeVFe~v~~PLV~~vLeGyN------~TIFAYGQTGSGKTYTM 253 (2159)
|.+|+| |...-..+.. .|..+..|.+ ++++=+|+||+||||+.
T Consensus 567 ~~~viG----Q~~ai~~l~~-~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 567 HHRVIG----QNEAVEAVSN-AIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred CCeEeC----CHHHHHHHHH-HHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 455664 5554444433 2333334433 56778899999999986
No 456
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.97 E-value=7.1e+02 Score=31.26 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhhhHHHHHHHHHHHHHHHHHhhh
Q 000113 621 TQHTKMMLRFREEKIKQLELLVNGSVTAEKYLMDENIALKEEIQLLQARID 671 (2159)
Q Consensus 621 ~q~sk~~lklree~i~~lE~l~s~~l~~E~~L~~En~~lk~Ei~~Lq~~~d 671 (2159)
-|.++|...|.|+...|-|.... .+..++||+.|+.-+|
T Consensus 96 sQL~RMrEDWIEEECHRVEAQLA------------LKEARkEIkQLkQvie 134 (305)
T PF15290_consen 96 SQLARMREDWIEEECHRVEAQLA------------LKEARKEIKQLKQVIE 134 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 36678888899998888886532 3566888888887543
No 457
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=29.80 E-value=19 Score=39.34 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.3
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
+...-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45567999999999887
No 458
>PRK00131 aroK shikimate kinase; Reviewed
Probab=29.75 E-value=23 Score=38.29 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.6
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
-+|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999999873
No 459
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=29.54 E-value=21 Score=42.16 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=17.3
Q ss_pred CceeEeecccCCCcceeeccc
Q 000113 236 NSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~G~ 256 (2159)
...++-||..|+|||++.-+-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 356899999999999987553
No 460
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.53 E-value=4.2e+02 Score=29.04 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=72.9
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcc--cchhhhhhhh-hhh-----hhhhhccch
Q 000113 1642 GTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTS--EDKKLLTSVE-SIA-----EDLRIVTSD 1713 (2159)
Q Consensus 1642 ~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s--~~~~~~~~~~-~~~-----~~~~~~~~~ 1713 (2159)
..+..|..+-..|+..++.+-..+..++..+.+-..+++.|+. |.. .+...+-.+. ++- .+-.-|+-+
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~----l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~ 81 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEE----LKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVS 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcccCCCCeEEEEcCCCcEEEEEecCCCeEEEE
Confidence 4567777788888888998999999999999998888888772 211 1111111100 000 000001110
Q ss_pred -------hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhh
Q 000113 1714 -------RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADE 1758 (2159)
Q Consensus 1714 -------~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e 1758 (2159)
+--+-++++.++..++.+....+.|..++-.++++++..+..+.+
T Consensus 82 lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 82 LGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224667888888888888888888888888888888776655544
No 461
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=29.51 E-value=20 Score=43.43 Aligned_cols=32 Identities=41% Similarity=0.690 Sum_probs=21.9
Q ss_pred ecccCCCcceee---cc-------cccc-----------ccCCCCCCCCChhH
Q 000113 242 YGQTGSGKTYTM---MG-------EINE-----------VEGKLNDDCGITPR 273 (2159)
Q Consensus 242 YGQTGSGKTYTM---~G-------~~~~-----------~~g~~~e~~GIIPR 273 (2159)
.|+.|+|||.|+ .| ...- --|-+|+.+|++|+
T Consensus 34 lG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k 86 (300)
T COG4152 34 LGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPK 86 (300)
T ss_pred ecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCcc
Confidence 489999999996 22 2111 12456888999997
No 462
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=29.16 E-value=41 Score=45.79 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=24.9
Q ss_pred HHHhhchhHHHHhh-cCCCceeEeecccCCCcceee
Q 000113 219 LFRVAGLPMVENCL-SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 219 VFe~v~~PLV~~vL-eGyN~TIFAYGQTGSGKTYTM 253 (2159)
||..+-.. ...++ .|.|-||+.-|.+|||||.|.
T Consensus 75 ifaiA~~A-y~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 75 VYAIADTA-YNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred HHHHHHHH-HHHHHHcCCCceEEEecCCCCCcchHH
Confidence 55443333 33333 589999999999999999985
No 463
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=29.15 E-value=20 Score=38.32 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.5
Q ss_pred eEeecccCCCcceee
Q 000113 239 MFAYGQTGSGKTYTM 253 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM 253 (2159)
|+-.|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 577899999998763
No 464
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=29.11 E-value=39 Score=45.94 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.1
Q ss_pred hcCCCceeEeecccCCCcceee
Q 000113 232 LSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 232 LeGyN~TIFAYGQTGSGKTYTM 253 (2159)
-.|.|-||+.-|.+|||||.|.
T Consensus 84 ~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 84 NEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred HcCCCceEEEECCCCCCchhHH
Confidence 3689999999999999999986
No 465
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.00 E-value=3.4e+02 Score=32.86 Aligned_cols=55 Identities=31% Similarity=0.411 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hChHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 000113 652 LMDENIALKEEIQLLQARID-RNPELTRFALENIRLLEQLQLFQSFYEQGEREKLLAELAELRDQLLD 718 (2159)
Q Consensus 652 L~~En~~lk~Ei~~Lq~~~d-~~~Ev~~~~~En~~L~eel~~~~~f~~~gere~l~~ei~~Lr~ql~~ 718 (2159)
++.|+++|.+++..|++.|+ -+.++-+...||-+|.+.+++ |..|+..|+..+.+
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~------------l~~ev~~L~~r~~E 202 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK------------LPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------chhHHHHHHHHHHH
Confidence 46677777777777777765 444555666677777666655 44455566766544
No 466
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=28.83 E-value=35 Score=40.05 Aligned_cols=29 Identities=28% Similarity=0.621 Sum_probs=22.5
Q ss_pred hchhHHHHhhc-CC--CceeEeecccCCCcce
Q 000113 223 AGLPMVENCLS-GY--NSCMFAYGQTGSGKTY 251 (2159)
Q Consensus 223 v~~PLV~~vLe-Gy--N~TIFAYGQTGSGKTY 251 (2159)
++-|-++.++. |+ .++++-||++|||||.
T Consensus 5 tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 5 TGIPGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred cCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 34566788776 44 6778999999999985
No 467
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.64 E-value=27 Score=47.07 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.2
Q ss_pred eeEeecccCCCcceeecc
Q 000113 238 CMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~G 255 (2159)
.++-||++|+|||.|+.-
T Consensus 112 illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKI 129 (637)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999998743
No 468
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=28.61 E-value=37 Score=42.12 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=14.6
Q ss_pred ceeEeecccCCCcceeec
Q 000113 237 SCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~ 254 (2159)
..|.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 356667999999999973
No 469
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=28.59 E-value=39 Score=46.01 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.7
Q ss_pred cCCCceeEeecccCCCcceee
Q 000113 233 SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.|.|-||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 689999999999999999996
No 470
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=28.56 E-value=31 Score=41.94 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=25.1
Q ss_pred CCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 212 EMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 212 e~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
+...|.++-+.+ .+.+-.|. .++.=.+||+|||.+.+-
T Consensus 9 ~r~~Q~~~m~~v----~~~~~~~~--~~~~eapTGtGKTl~~L~ 46 (289)
T smart00489 9 PYPIQYEFMEEL----KRVLDRGK--IGILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHHH----HHHHHcCC--cEEEECCCCcchhHHHHH
Confidence 455677755443 34445664 456677999999998754
No 471
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=28.56 E-value=31 Score=41.94 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=25.1
Q ss_pred CCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 212 EMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 212 e~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
+...|.++-+.+ .+.+-.|. .++.=.+||+|||.+.+-
T Consensus 9 ~r~~Q~~~m~~v----~~~~~~~~--~~~~eapTGtGKTl~~L~ 46 (289)
T smart00488 9 PYPIQYEFMEEL----KRVLDRGK--IGILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHHH----HHHHHcCC--cEEEECCCCcchhHHHHH
Confidence 455677755443 34445664 456677999999998754
No 472
>CHL00181 cbbX CbbX; Provisional
Probab=28.39 E-value=43 Score=40.88 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=13.2
Q ss_pred eEeecccCCCcceee
Q 000113 239 MFAYGQTGSGKTYTM 253 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM 253 (2159)
|+=||++||||||.-
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 667999999999875
No 473
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=28.27 E-value=1.2e+03 Score=28.86 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000113 598 AVTQKLEAEIEHMNRLLCQREEDTQHTKMMLRFREEKIKQLEL 640 (2159)
Q Consensus 598 ~e~~kleeeie~ln~Ll~qkee~~q~sk~~lklree~i~~lE~ 640 (2159)
.-+.+++....+.++.+.+.+.++.+++.+-.-....|..+|.
T Consensus 77 ~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 77 RNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666777777777776666664444445555554
No 474
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.18 E-value=29 Score=43.08 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=27.5
Q ss_pred ecCCCCChHHHHHhhchhH-HHHhhcCC---CceeEeecccCCCcceee
Q 000113 209 IACEMISQEKLFRVAGLPM-VENCLSGY---NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 209 VFde~aSQEeVFe~v~~PL-V~~vLeGy---N~TIFAYGQTGSGKTYTM 253 (2159)
|.+-..--+.+-+.+..|+ ...+|.|- -..|+-||+.|+||+|--
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLA 183 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLA 183 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHH
Confidence 3333333344444555554 34555554 367999999999999943
No 475
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=28.17 E-value=7.4e+02 Score=31.74 Aligned_cols=51 Identities=31% Similarity=0.305 Sum_probs=23.8
Q ss_pred HHHHHHhhhhhhhHHHHHhhHHHHHHH----HHhhhhhHHHHHHHHHHHHhhhhh
Q 000113 1726 EELRKVSKERDKLWVEICSLNDKLAMA----YALADENEAIAVEARQELEASKLY 1776 (2159)
Q Consensus 1726 ~~l~~~~~Erd~l~~e~~~l~~kle~a----~a~a~e~eaia~ea~q~ae~~k~y 1776 (2159)
=.|+.+..|...-.+|...||..|.-| ++|++|--|--+|-+-.-..+.+|
T Consensus 148 lqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~y 202 (401)
T PF06785_consen 148 LQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAY 202 (401)
T ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Confidence 345555555555555555554444332 234444444444444444444444
No 476
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=28.16 E-value=40 Score=45.79 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=25.1
Q ss_pred HHHhhchhHHHHhh-cCCCceeEeecccCCCcceee
Q 000113 219 LFRVAGLPMVENCL-SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 219 VFe~v~~PLV~~vL-eGyN~TIFAYGQTGSGKTYTM 253 (2159)
||..+- ....+++ .|-|-||+.-|.+|||||.|.
T Consensus 69 ifavA~-~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 69 VFAIAD-RAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred HHHHHH-HHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 554333 3334444 589999999999999999986
No 477
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.15 E-value=8.2e+02 Score=32.50 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 000113 703 EKLLAELAELRDQLLD 718 (2159)
Q Consensus 703 e~l~~ei~~Lr~ql~~ 718 (2159)
..+-+.|++|+.||-+
T Consensus 431 ~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 431 GSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445678888888754
No 478
>PRK14974 cell division protein FtsY; Provisional
Probab=28.11 E-value=46 Score=41.71 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.3
Q ss_pred CceeEeecccCCCcceeec
Q 000113 236 NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~ 254 (2159)
...|.-.|++|+|||.|+-
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4578889999999999973
No 479
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=28.10 E-value=43 Score=45.54 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=19.8
Q ss_pred cCCCceeEeecccCCCcceee
Q 000113 233 SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 589999999999999999996
No 480
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.03 E-value=1.6e+03 Score=29.93 Aligned_cols=146 Identities=18% Similarity=0.191 Sum_probs=108.4
Q ss_pred hhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc
Q 000113 1611 RKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRT 1690 (2159)
Q Consensus 1611 ~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~ 1690 (2159)
.+-+++|+ +++.+.+++-+......-..+.++.|..+|.+|-..|....--...+-.+-.+.++=-.++-.+++
T Consensus 145 e~~~q~da---~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l--- 218 (446)
T KOG4438|consen 145 ELRKQLDA---KYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKIL--- 218 (446)
T ss_pred HHHHHHHH---HHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH---
Confidence 34455555 366667777777777766778889999999998877777666666666666665554444333333
Q ss_pred ccchhhhhhhhhhhhhhhhc-cchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHH
Q 000113 1691 SEDKKLLTSVESIAEDLRIV-TSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAI 1762 (2159)
Q Consensus 1691 s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eai 1762 (2159)
++++-+..++++++.-|++- .+|..+|...++.+++-|-+-..-++.|++.--+|.+|+.-++.+-.|-=|.
T Consensus 219 ~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~ 291 (446)
T KOG4438|consen 219 NALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKAL 291 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 33344556678888877753 4678999999999999999999999999999999999999999887776553
No 481
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=27.99 E-value=25 Score=43.88 Aligned_cols=44 Identities=23% Similarity=0.456 Sum_probs=32.2
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
|.|..|. .|+++ ..-++-.+++.+-+.|+-.|.+|+|||..+-+
T Consensus 1 ~pf~~iv----gq~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r~ 44 (337)
T TIGR02030 1 FPFTAIV----GQDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVRA 44 (337)
T ss_pred CCccccc----cHHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHH
Confidence 4455555 45554 34566777787778899999999999998755
No 482
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=27.98 E-value=5.2e+02 Score=33.96 Aligned_cols=134 Identities=17% Similarity=0.199 Sum_probs=75.4
Q ss_pred cccccchhhhhchHHHHHhHHHHHHHHHHHHHHhHHhHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHhhHHHHHHHH
Q 000113 1324 ETSNHASSFFSKFEEARETMREADSMLNTLLKANENAKQLNDKWRQAGEQLMADRASLTDEVEQLKFLIRLKEEENELLM 1403 (2159)
Q Consensus 1324 ~~~~ea~~~l~KFEEAqaTmkEAD~mlnaL~~ANE~~K~~~~~~Kq~~e~l~~Ek~~L~~evq~Lks~i~~ke~en~~L~ 1403 (2159)
+...---+++.+.|+-+-++.++|. +++-++.+..-++.-|.-+.+..+.+.|...++++++-=-.++
T Consensus 157 ~e~~~Y~~~l~~Le~~~~~~~~~~~-----~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~------- 224 (447)
T KOG2751|consen 157 DEVDTYKACLQRLEQQNQDVSEEDL-----LKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLN------- 224 (447)
T ss_pred HHHHHHHHHHHHHhhcCcccchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4444444555556655555544443 5555666665566666666666666666666555433222111
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHhHhhhhhchhhhhHhhhhhh
Q 000113 1404 DHLHFNMSEIDTSISLLEGCFLQVQKEVEDRFKELYSDALLMGRDVHHFISNSKSLQDDIFSGIMEKGFQQFVFYLCHIG 1483 (2159)
Q Consensus 1404 ~~~~~~L~em~~~v~~LE~~~~q~q~~~~e~~~~~~~d~~~~~~~~l~~~~~~r~~le~i~sei~~k~~~~~vl~~c~~G 1483 (2159)
..++.|.+.+..+.-+......++.++.-++.+ +.+.|+.+|-.+|...| + |.-|-|
T Consensus 225 ---------------e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~----s~~qldkL~ktNv~n~~-F---~I~~~G 281 (447)
T KOG2751|consen 225 ---------------EEEDQYWREYNNFQRQLIEHQDELDSLEAQIEY----SQAQLDKLRKTNVFNAT-F---HIWHDG 281 (447)
T ss_pred ---------------HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH----HHHHHHHHHhhhhhhhe-e---eEeecc
Confidence 225556665555555555556666666655555 45678888888888543 3 444555
Q ss_pred HHHHhhcccc
Q 000113 1484 AFMHKILNSS 1493 (2159)
Q Consensus 1484 ~ll~~i~~~~ 1493 (2159)
.+ -+|-|++
T Consensus 282 ~f-gtIN~FR 290 (447)
T KOG2751|consen 282 EF-GTINNFR 290 (447)
T ss_pred cc-cccccce
Confidence 55 4555555
No 483
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=27.91 E-value=18 Score=44.11 Aligned_cols=12 Identities=58% Similarity=0.880 Sum_probs=11.2
Q ss_pred ecccCCCcceee
Q 000113 242 YGQTGSGKTYTM 253 (2159)
Q Consensus 242 YGQTGSGKTYTM 253 (2159)
.|++|||||.||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 599999999998
No 484
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.89 E-value=2.1e+02 Score=28.96 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=43.4
Q ss_pred HHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhh
Q 000113 1782 EEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRL 1833 (2159)
Q Consensus 1782 eevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~ 1833 (2159)
|...-||..|.-+=.||..|..+|..++++.....=.++.|..|.+.|++.-
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888899999999999999998888878888888888888543
No 485
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.78 E-value=8e+02 Score=27.60 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=62.5
Q ss_pred hhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 000113 1614 SQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSED 1693 (2159)
Q Consensus 1614 s~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~ 1693 (2159)
..++.++-.++.||.+|+-....|.-.++.++.......---..|+.+-......+.++.+..+=. +.+++.....
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~----~~vL~~~~~~ 95 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA----HPVLQLDDSG 95 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhhcccccc
Confidence 445667777777777777655555554444444444444333444443333333333333222111 2233333220
Q ss_pred hh---------hh-hhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhh
Q 000113 1694 KK---------LL-TSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALA 1756 (2159)
Q Consensus 1694 ~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a 1756 (2159)
.. .+ .+....+-.+ +-..+...+..+..+|+.+.+-..+ |-.+++.++.+|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l-----~d~el~~l~~ql~~hl~s~~~n~~~----l~~~~~~ie~~~~~L 159 (160)
T PF13094_consen 96 VLELPELPQKSLLEASESRFAPTL-----CDEELLPLLKQLNKHLESMQNNLQQ----LKGLLEAIERSYAAL 159 (160)
T ss_pred ccccccccccccccccccccCccc-----chHHHHHHHHHHHHHHHHHHccHHH----HHHHHHHHHHHHHhc
Confidence 00 00 0000011111 2345666677777666666554443 667888888888753
No 486
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=27.70 E-value=30 Score=42.38 Aligned_cols=29 Identities=24% Similarity=0.309 Sum_probs=21.3
Q ss_pred hhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 225 LPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 225 ~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.+++..++.+. .+|.-.|.||||||..|-
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 35566666544 567778999999999764
No 487
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=27.65 E-value=1.8e+03 Score=30.59 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=27.8
Q ss_pred HHHHHHHH---HHHHhhhhhhcchhhhhhHhhhhHH-----HHHHHhcccchhh
Q 000113 2092 EQLRERDQ---LLSAQNDMLKMDKTNLLKRISELDD-----MVKMLIGTQSTQE 2137 (2159)
Q Consensus 2092 eqL~qrdq---lL~aqnemLk~e~~n~~~ki~eLd~-----~vk~L~g~qn~q~ 2137 (2159)
...++|+. .|...-|.+|.-..-|+.-|+-|-+ .-|-|...||+.-
T Consensus 470 ~r~~e~~~~i~~l~~~~e~mk~kl~elq~lv~~l~~~~~e~~~k~l~aaq~~~~ 523 (617)
T PF15070_consen 470 QRHQEKEEYISRLAQDREEMKVKLLELQELVLRLVGDHNEWHSKFLAAAQNPAD 523 (617)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhcCCCC
Confidence 45566653 3566667777777777777776643 3445555666643
No 488
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=27.64 E-value=24 Score=46.94 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.1
Q ss_pred eeEeecccCCCcceeec
Q 000113 238 CMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~ 254 (2159)
...--|+.|+|||||+.
T Consensus 203 l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 203 LLIIHGPPGTGKTRTLV 219 (649)
T ss_pred ceEeeCCCCCCceeeHH
Confidence 34568999999999983
No 489
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.54 E-value=58 Score=44.06 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=18.0
Q ss_pred CCCceeEeecccCCCcceee
Q 000113 234 GYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM 253 (2159)
+-|-+|.-.|.||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 56888999999999999877
No 490
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.43 E-value=6.9e+02 Score=26.68 Aligned_cols=104 Identities=19% Similarity=0.300 Sum_probs=64.1
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHH
Q 000113 1644 IDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVES 1723 (2159)
Q Consensus 1644 ~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1723 (2159)
+..+..+-+.++..++-+...+...+.++.|...|++.|+. |. .|.+..-+|..+.=. +.+.+=...+...++.
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~----l~-~d~~vyk~VG~vlv~-~~~~e~~~~l~~r~e~ 78 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELER----LP-DDTPVYKSVGNLLVK-TDKEEAIQELKEKKET 78 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CC-CcchhHHHhchhhhe-ecHHHHHHHHHHHHHH
Confidence 45667777889999999999999999999999999887653 32 233333333111100 1111113444555666
Q ss_pred HHHHHHHHhhhhhhhHHHHHhhHHHHHHHH
Q 000113 1724 VEEELRKVSKERDKLWVEICSLNDKLAMAY 1753 (2159)
Q Consensus 1724 l~~~l~~~~~Erd~l~~e~~~l~~kle~a~ 1753 (2159)
++..++.+....+.|+..+-.+..+|..++
T Consensus 79 ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 79 LELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666666666665543
No 491
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=27.32 E-value=46 Score=45.80 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=27.6
Q ss_pred HHH-hhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 219 LFR-VAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 219 VFe-~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
-|+ .++..+++.+-+|-+-.+++. .||||||||-+-
T Consensus 168 yyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 168 YYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 344 345578889999999966665 899999999754
No 492
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=27.28 E-value=41 Score=45.10 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=26.8
Q ss_pred cCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 210 ACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 210 Fde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
|.++..|..+...+.. +.-......++..|+||||||...+
T Consensus 234 f~lt~~Q~~ai~~I~~----~~~~~~~~~~Ll~g~TGSGKT~va~ 274 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQ----DLKSDVPMNRLLQGDVGSGKTLVAA 274 (630)
T ss_pred CCCCHHHHHHHHHHHH----HhccCCCccEEEECCCCCcHHHHHH
Confidence 4566667766654432 2223334457999999999998754
No 493
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=27.13 E-value=36 Score=40.73 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.6
Q ss_pred cCC--CceeEeecccCCCcce
Q 000113 233 SGY--NSCMFAYGQTGSGKTY 251 (2159)
Q Consensus 233 eGy--N~TIFAYGQTGSGKTY 251 (2159)
.|+ ..+++-+|++|||||.
T Consensus 31 GGip~gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSL 51 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHH
Confidence 454 6778999999999985
No 494
>PRK10869 recombination and repair protein; Provisional
Probab=27.09 E-value=1.7e+03 Score=30.14 Aligned_cols=190 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHh------HHHHhhhhchhhHHHH---hhhhhhHHhh-hhHHHHHHH
Q 000113 1589 KDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQH------EKLEASLTDTENALVI---AKGTIDTLSD-QNADLRVLL 1658 (2159)
Q Consensus 1589 kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~------~~LE~~L~d~~~al~~---~~~~~~~ls~-eN~eLr~~l 1658 (2159)
++.+.+.+++...-.....+++.-..|++++=.-+ ..|+.+.....++-.+ +...+..|.. ++......|
T Consensus 167 ~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l 246 (553)
T PRK10869 167 HQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQL 246 (553)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHH----------HH
Q 000113 1659 KDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEE----------EL 1728 (2159)
Q Consensus 1659 ~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----------~l 1728 (2159)
..+.-.-..+..-=..-..+.+.|+.-...|... ...+..-+.-+..|..++...-+-|.. .+
T Consensus 247 ~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~-------~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~ 319 (553)
T PRK10869 247 YSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEA-------SDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSP 319 (553)
T ss_pred HHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCH
Q ss_pred HHHhhhhhhhHHHHHhhHHHHH----HHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 000113 1729 RKVSKERDKLWVEICSLNDKLA----MAYALADENEAIAVEARQELEASKLYAEQKEEEVK 1785 (2159)
Q Consensus 1729 ~~~~~Erd~l~~e~~~l~~kle----~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk 1785 (2159)
..+..-++.+..|+..|.+--+ +-..++.-....-.-|.+.+++||.+|+.=+..|.
T Consensus 320 ~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~ 380 (553)
T PRK10869 320 EELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLIT 380 (553)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=27.05 E-value=45 Score=45.30 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.2
Q ss_pred hcCCCceeEeecccCCCcceee
Q 000113 232 LSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 232 LeGyN~TIFAYGQTGSGKTYTM 253 (2159)
-.|.|-||+.-|.+|||||.|.
T Consensus 82 ~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 82 SENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred HcCCCceEEEEcCCCCCcchHH
Confidence 3689999999999999999986
No 496
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=26.92 E-value=44 Score=45.49 Aligned_cols=34 Identities=38% Similarity=0.642 Sum_probs=24.8
Q ss_pred HHHhhchhHHHHhh-cCCCceeEeecccCCCcceee
Q 000113 219 LFRVAGLPMVENCL-SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 219 VFe~v~~PLV~~vL-eGyN~TIFAYGQTGSGKTYTM 253 (2159)
||..+-. ....++ .|.|-||+--|.+|||||.|.
T Consensus 70 ifavA~~-Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 70 LFAIANL-AFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred HHHHHHH-HHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 5544332 233333 689999999999999999996
No 497
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=26.90 E-value=32 Score=46.47 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=29.2
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+.|+.+++....-..+.+.+. . +...+..|+=+|.||||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~-----~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVE-----M-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHHHH-----H-HhCCCCCEEEECCCCcCHHHHH
Confidence 566666665543444443332 1 4467889999999999999854
No 498
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=26.87 E-value=22 Score=43.27 Aligned_cols=20 Identities=35% Similarity=0.611 Sum_probs=17.7
Q ss_pred cCCCceeEeecccCCCccee
Q 000113 233 SGYNSCMFAYGQTGSGKTYT 252 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYT 252 (2159)
.|++-+|+.-|++|+|||.=
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 48889999999999999863
No 499
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=26.85 E-value=26 Score=37.25 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.6
Q ss_pred eeEeecccCCCcceee
Q 000113 238 CMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM 253 (2159)
+|+-+|.+|||||+--
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 5788999999998753
No 500
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=26.80 E-value=47 Score=46.08 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCCChhcccCCceeEEecCCCceEEEcCCCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcc
Q 000113 171 PLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKT 250 (2159)
Q Consensus 171 Pls~~E~~s~g~~~cv~~~s~~tiv~~g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKT 250 (2159)
|+............-+.......+...+...+.|.||.--+. ++..+..|+||||||
T Consensus 414 p~~~~~~G~~~~~~~~~~~~~~~l~~~t~~gtp~~~n~h~~d-----------------------~g~~~i~G~tGsGKS 470 (818)
T PRK13830 414 PLNSVWSGSPVAPCPFYPPNSPPLMQVASGSTPFRLNLHVDD-----------------------VGHTLIFGPTGSGKS 470 (818)
T ss_pred hhcccCCCCCCCCCccCCCCCCcceeecCCCceEEEEEEECC-----------------------CCEEEEECCCCCCHH
Q ss_pred eee
Q 000113 251 YTM 253 (2159)
Q Consensus 251 YTM 253 (2159)
+.|
T Consensus 471 ~l~ 473 (818)
T PRK13830 471 TLL 473 (818)
T ss_pred HHH
Done!