Query 000113
Match_columns 2159
No_of_seqs 422 out of 1894
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:57:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 2.4E-90 8.3E-95 818.5 24.8 351 159-530 9-362 (365)
2 2vvg_A Kinesin-2; motor protei 100.0 2.2E-89 7.4E-94 806.7 28.2 333 160-511 3-347 (350)
3 1goj_A Kinesin, kinesin heavy 100.0 4.2E-89 1.4E-93 805.7 29.8 337 160-511 5-342 (355)
4 3cob_A Kinesin heavy chain-lik 100.0 1.1E-88 3.8E-93 805.2 31.4 348 159-535 3-355 (369)
5 3bfn_A Kinesin-like protein KI 100.0 8.2E-89 2.8E-93 809.7 27.2 338 159-512 19-360 (388)
6 3b6u_A Kinesin-like protein KI 100.0 4.4E-89 1.5E-93 809.1 23.2 338 159-511 19-365 (372)
7 1t5c_A CENP-E protein, centrom 100.0 1.6E-88 5.5E-93 799.2 27.4 335 159-513 2-342 (349)
8 2owm_A Nckin3-434, related to 100.0 3.5E-88 1.2E-92 816.5 30.1 336 159-507 36-421 (443)
9 1x88_A Kinesin-like protein KI 100.0 3E-88 1E-92 799.5 25.1 338 159-508 6-359 (359)
10 2zfi_A Kinesin-like protein KI 100.0 6E-88 2.1E-92 798.7 26.7 337 160-507 3-362 (366)
11 2wbe_C Bipolar kinesin KRP-130 100.0 1.2E-87 4.1E-92 797.6 24.8 341 158-510 20-372 (373)
12 1bg2_A Kinesin; motor protein, 100.0 9.4E-88 3.2E-92 786.4 22.8 321 159-499 5-325 (325)
13 3lre_A Kinesin-like protein KI 100.0 4.8E-87 1.6E-91 788.3 28.6 325 159-499 8-355 (355)
14 4a14_A Kinesin, kinesin-like p 100.0 2.5E-86 8.4E-91 779.5 27.8 328 159-497 9-344 (344)
15 3gbj_A KIF13B protein; kinesin 100.0 9.2E-86 3.1E-90 777.1 27.2 325 161-498 1-349 (354)
16 2h58_A Kinesin-like protein KI 100.0 2.6E-85 8.9E-90 767.2 29.3 321 160-500 3-329 (330)
17 1f9v_A Kinesin-like protein KA 100.0 6.4E-85 2.2E-89 768.2 28.5 326 160-504 2-346 (347)
18 3t0q_A AGR253WP; kinesin, alph 100.0 1.1E-84 3.6E-89 766.9 30.0 326 159-503 3-348 (349)
19 2rep_A Kinesin-like protein KI 100.0 8.3E-85 2.8E-89 773.7 28.3 328 157-499 18-376 (376)
20 3nwn_A Kinesin-like protein KI 100.0 4.1E-85 1.4E-89 772.6 25.0 320 159-499 22-359 (359)
21 2heh_A KIF2C protein; kinesin, 100.0 1.3E-84 4.3E-89 773.6 26.2 325 159-502 49-385 (387)
22 1ry6_A Internal kinesin; kines 100.0 1.1E-84 3.6E-89 769.3 25.4 327 162-507 1-339 (360)
23 1v8k_A Kinesin-like protein KI 100.0 2.3E-84 8E-89 775.6 26.7 327 159-504 69-407 (410)
24 2nr8_A Kinesin-like protein KI 100.0 2.4E-84 8.4E-89 765.7 23.7 320 158-499 20-358 (358)
25 4etp_A Kinesin-like protein KA 100.0 2.5E-83 8.6E-88 767.2 29.3 328 159-504 57-402 (403)
26 3u06_A Protein claret segregat 100.0 8E-83 2.7E-87 764.1 27.2 325 159-508 57-392 (412)
27 3dc4_A Kinesin-like protein NO 100.0 8.8E-82 3E-86 740.7 26.8 317 159-503 20-339 (344)
28 4h1g_A Maltose binding protein 100.0 1.1E-77 3.7E-82 761.0 29.9 322 159-500 372-712 (715)
29 2kin_B Kinesin; motor protein, 99.9 8.1E-29 2.8E-33 247.1 6.2 88 421-511 1-88 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 6.8E-28 2.3E-32 246.5 9.6 103 425-530 1-115 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 1.8E-24 6.2E-29 246.8 9.4 262 159-506 22-296 (298)
32 1i84_S Smooth muscle myosin he 97.8 3.8E-05 1.3E-09 103.8 10.3 22 232-253 165-186 (1184)
33 1i84_S Smooth muscle myosin he 97.6 6.7E-05 2.3E-09 101.5 8.7 20 361-380 236-255 (1184)
34 3na7_A HP0958; flagellar bioge 91.4 14 0.00046 42.5 21.1 94 1714-1826 41-134 (256)
35 3ec2_A DNA replication protein 91.0 0.05 1.7E-06 57.4 0.6 50 204-254 7-56 (180)
36 2w58_A DNAI, primosome compone 90.9 0.063 2.1E-06 57.5 1.3 51 203-254 21-72 (202)
37 2qgz_A Helicase loader, putati 90.0 0.088 3E-06 61.5 1.5 52 203-255 120-171 (308)
38 3na7_A HP0958; flagellar bioge 89.3 7.4 0.00025 44.7 16.5 69 1857-1925 102-170 (256)
39 3vkg_A Dynein heavy chain, cyt 87.0 41 0.0014 50.8 25.3 95 1778-1900 2010-2104(3245)
40 2dfs_A Myosin-5A; myosin-V, in 86.2 5.6 0.00019 54.3 15.1 21 233-253 153-173 (1080)
41 4b4t_M 26S protease regulatory 86.2 1.5 5E-05 54.3 8.8 81 203-283 177-271 (434)
42 3vkg_A Dynein heavy chain, cyt 86.1 9.9 0.00034 57.0 18.3 145 1595-1763 1936-2090(3245)
43 4b4t_K 26S protease regulatory 84.5 1.7 5.9E-05 53.5 8.3 80 204-283 169-262 (428)
44 3t15_A Ribulose bisphosphate c 84.2 0.37 1.3E-05 55.7 2.2 48 206-253 2-53 (293)
45 2r62_A Cell division protease 84.0 0.44 1.5E-05 53.2 2.6 50 203-253 7-61 (268)
46 2v71_A Nuclear distribution pr 83.5 11 0.00038 42.2 13.3 124 1770-1900 37-174 (189)
47 2dfs_A Myosin-5A; myosin-V, in 83.3 11 0.00037 51.6 15.8 20 361-380 209-228 (1080)
48 4b4t_L 26S protease subunit RP 81.3 0.99 3.4E-05 55.8 4.5 50 204-253 178-232 (437)
49 4b4t_J 26S protease regulatory 80.8 3.7 0.00013 50.5 9.1 80 204-283 145-238 (405)
50 4b4t_I 26S protease regulatory 80.8 3.9 0.00013 50.7 9.4 80 204-283 179-272 (437)
51 1l8q_A Chromosomal replication 80.2 0.75 2.6E-05 53.1 2.8 49 203-254 7-55 (324)
52 3bos_A Putative DNA replicatio 80.2 0.76 2.6E-05 49.4 2.7 46 203-254 24-70 (242)
53 2bjv_A PSP operon transcriptio 79.9 0.6 2.1E-05 52.2 1.8 45 203-253 2-46 (265)
54 2v1u_A Cell division control p 79.8 0.45 1.5E-05 54.9 0.8 46 207-253 15-61 (387)
55 1jbk_A CLPB protein; beta barr 79.7 0.69 2.4E-05 47.4 2.0 29 226-254 33-61 (195)
56 3te6_A Regulatory protein SIR3 79.3 0.51 1.7E-05 56.0 1.0 27 227-253 36-62 (318)
57 3u1c_A Tropomyosin alpha-1 cha 78.8 18 0.00063 36.5 11.9 88 1743-1837 12-99 (101)
58 1g8p_A Magnesium-chelatase 38 78.7 0.55 1.9E-05 54.0 1.1 43 203-253 20-62 (350)
59 3h4m_A Proteasome-activating n 78.6 0.6 2.1E-05 52.5 1.3 51 203-253 13-68 (285)
60 2p65_A Hypothetical protein PF 77.7 0.74 2.5E-05 47.3 1.6 29 226-254 33-61 (187)
61 3u59_A Tropomyosin beta chain; 77.7 23 0.00078 35.7 12.2 88 1743-1837 12-99 (101)
62 1ixz_A ATP-dependent metallopr 77.2 0.44 1.5E-05 52.9 -0.3 50 203-253 12-66 (254)
63 3cf0_A Transitional endoplasmi 76.4 0.7 2.4E-05 53.3 1.1 50 204-253 12-66 (301)
64 2v71_A Nuclear distribution pr 76.4 30 0.001 38.8 13.7 128 1592-1743 16-154 (189)
65 1qde_A EIF4A, translation init 75.2 1 3.4E-05 48.8 1.8 24 228-253 45-68 (224)
66 3nmd_A CGMP dependent protein 74.9 4.8 0.00016 38.9 6.0 48 1850-1897 17-64 (72)
67 3b9p_A CG5977-PA, isoform A; A 74.7 0.78 2.7E-05 52.0 0.9 51 203-253 17-71 (297)
68 1vec_A ATP-dependent RNA helic 74.3 1.1 3.7E-05 47.8 1.8 25 228-254 34-58 (206)
69 3o0z_A RHO-associated protein 74.2 31 0.0011 38.0 12.9 69 1624-1692 9-77 (168)
70 2gxq_A Heat resistant RNA depe 73.3 1.2 4.1E-05 47.4 1.8 23 229-253 33-55 (207)
71 3u59_A Tropomyosin beta chain; 73.0 27 0.00092 35.2 11.3 93 1703-1795 7-99 (101)
72 1ykh_B RNA polymerase II holoe 73.0 16 0.00055 38.7 10.1 78 1004-1088 52-129 (132)
73 3ol1_A Vimentin; structural ge 72.7 30 0.001 35.9 11.9 96 1782-1898 20-119 (119)
74 2kjq_A DNAA-related protein; s 72.6 1.5 5E-05 46.1 2.2 19 237-255 37-55 (149)
75 2z4s_A Chromosomal replication 72.6 1.3 4.4E-05 54.2 2.1 48 203-254 101-148 (440)
76 1fnn_A CDC6P, cell division co 72.2 1.6 5.5E-05 50.6 2.7 39 214-253 20-61 (389)
77 1d2n_A N-ethylmaleimide-sensit 71.8 1.7 5.7E-05 49.0 2.6 21 233-253 61-81 (272)
78 1yke_B RNA polymerase II holoe 71.7 12 0.0004 40.6 8.9 81 1004-1091 52-132 (151)
79 3bor_A Human initiation factor 71.4 0.96 3.3E-05 50.0 0.5 24 228-253 61-84 (237)
80 3d8b_A Fidgetin-like protein 1 70.7 0.92 3.2E-05 53.7 0.2 50 204-253 81-134 (357)
81 4etp_B Spindle POLE BODY-assoc 70.6 15 0.00053 43.9 10.2 121 160-317 58-183 (333)
82 1iy2_A ATP-dependent metallopr 70.3 0.83 2.8E-05 51.8 -0.3 50 203-253 36-90 (278)
83 3dkp_A Probable ATP-dependent 70.1 1.5 5.2E-05 48.2 1.8 24 228-253 60-83 (245)
84 3u1c_A Tropomyosin alpha-1 cha 70.1 36 0.0012 34.4 11.5 89 1707-1795 11-99 (101)
85 2qz4_A Paraplegin; AAA+, SPG7, 68.9 0.73 2.5E-05 50.8 -1.1 20 234-253 37-56 (262)
86 2chg_A Replication factor C sm 68.6 1.9 6.4E-05 45.3 2.0 21 233-253 35-55 (226)
87 3b6e_A Interferon-induced heli 68.0 0.97 3.3E-05 48.1 -0.3 35 211-255 33-67 (216)
88 3fmo_B ATP-dependent RNA helic 67.8 1.8 6.3E-05 50.0 1.9 26 228-253 123-148 (300)
89 3uk6_A RUVB-like 2; hexameric 67.6 2.1 7E-05 49.9 2.2 47 203-254 40-88 (368)
90 2pl3_A Probable ATP-dependent 67.6 1.9 6.4E-05 47.3 1.8 23 229-253 57-79 (236)
91 1xwi_A SKD1 protein; VPS4B, AA 67.5 1.3 4.4E-05 51.9 0.5 50 204-253 9-62 (322)
92 4b4t_H 26S protease regulatory 66.9 3 0.0001 52.1 3.6 80 204-283 206-299 (467)
93 1t6n_A Probable ATP-dependent 66.4 1.8 6.3E-05 46.7 1.4 26 228-255 45-70 (220)
94 2qby_A CDC6 homolog 1, cell di 66.2 1.7 5.7E-05 50.1 1.1 20 234-253 43-62 (386)
95 3syl_A Protein CBBX; photosynt 66.1 1.7 5.7E-05 49.4 1.0 20 234-253 65-84 (309)
96 3ly5_A ATP-dependent RNA helic 65.8 1.8 6E-05 48.9 1.2 24 228-253 85-108 (262)
97 2qby_B CDC6 homolog 3, cell di 65.6 2.1 7.2E-05 49.8 1.8 40 213-253 22-62 (384)
98 1lv7_A FTSH; alpha/beta domain 64.6 1.2 4E-05 49.7 -0.5 50 203-253 8-62 (257)
99 1wrb_A DJVLGB; RNA helicase, D 64.0 2.4 8.2E-05 47.0 1.8 23 229-253 55-77 (253)
100 3iuy_A Probable ATP-dependent 63.7 2.3 7.8E-05 46.3 1.5 23 229-253 52-74 (228)
101 1sxj_C Activator 1 40 kDa subu 63.6 2.6 8.7E-05 49.2 2.0 42 205-254 23-64 (340)
102 1sxj_D Activator 1 41 kDa subu 63.3 2.2 7.6E-05 49.0 1.4 26 228-253 50-75 (353)
103 2fxo_A Myosin heavy chain, car 63.2 90 0.0031 32.7 13.2 39 1714-1752 85-123 (129)
104 3fe2_A Probable ATP-dependent 62.7 2.4 8.3E-05 46.8 1.5 23 229-253 61-83 (242)
105 3eiq_A Eukaryotic initiation f 62.2 2.8 9.7E-05 48.9 2.1 24 228-253 71-94 (414)
106 1p9r_A General secretion pathw 62.2 2.5 8.7E-05 51.8 1.7 29 226-254 157-185 (418)
107 2c9o_A RUVB-like 1; hexameric 61.7 3.3 0.00011 50.7 2.5 47 203-254 33-81 (456)
108 2oxc_A Probable ATP-dependent 61.3 2.9 9.9E-05 45.9 1.8 22 230-253 57-78 (230)
109 2x8a_A Nuclear valosin-contain 61.3 1.4 4.8E-05 50.6 -0.7 50 204-253 7-61 (274)
110 3fmp_B ATP-dependent RNA helic 61.2 2.9 9.8E-05 50.7 1.9 26 228-253 123-148 (479)
111 3llm_A ATP-dependent RNA helic 60.7 2.6 9E-05 46.6 1.3 24 228-253 70-93 (235)
112 3fht_A ATP-dependent RNA helic 60.6 3 0.0001 48.5 1.9 26 228-253 56-81 (412)
113 3eie_A Vacuolar protein sortin 60.6 2.2 7.5E-05 49.6 0.7 50 204-253 15-68 (322)
114 3pey_A ATP-dependent RNA helic 60.6 2.8 9.5E-05 48.3 1.6 27 228-254 36-62 (395)
115 3ol1_A Vimentin; structural ge 60.3 44 0.0015 34.7 10.2 77 2053-2129 19-95 (119)
116 1q0u_A Bstdead; DEAD protein, 60.2 2.1 7.2E-05 46.4 0.4 23 229-253 36-58 (219)
117 3efg_A Protein SLYX homolog; x 59.6 14 0.00047 36.1 5.9 52 1787-1838 12-63 (78)
118 3jvv_A Twitching mobility prot 59.5 2.8 9.6E-05 50.3 1.4 28 227-254 114-141 (356)
119 3ber_A Probable ATP-dependent 59.4 3.2 0.00011 46.5 1.8 23 229-253 75-97 (249)
120 2qp9_X Vacuolar protein sortin 58.5 2.7 9.1E-05 49.9 1.0 50 204-253 48-101 (355)
121 3vfd_A Spastin; ATPase, microt 58.5 2.2 7.7E-05 50.8 0.3 51 203-253 111-165 (389)
122 2j0s_A ATP-dependent RNA helic 57.2 3.3 0.00011 48.6 1.4 24 229-254 69-92 (410)
123 2zan_A Vacuolar protein sortin 56.1 2.5 8.4E-05 51.8 0.1 50 204-253 131-184 (444)
124 2fz4_A DNA repair protein RAD2 55.5 3.3 0.00011 46.4 1.0 42 205-256 87-128 (237)
125 1njg_A DNA polymerase III subu 55.5 5 0.00017 42.3 2.4 18 237-254 46-63 (250)
126 1s2m_A Putative ATP-dependent 54.7 3.6 0.00012 48.0 1.2 24 229-254 53-76 (400)
127 2r44_A Uncharacterized protein 54.4 3.2 0.00011 47.9 0.8 38 211-254 27-64 (331)
128 3h1t_A Type I site-specific re 54.3 4.1 0.00014 51.0 1.7 38 212-254 179-216 (590)
129 2z0m_A 337AA long hypothetical 54.0 4.1 0.00014 46.0 1.4 26 229-256 26-51 (337)
130 3o0z_A RHO-associated protein 54.0 1.9E+02 0.0066 32.0 14.2 105 1625-1750 45-153 (168)
131 2eyu_A Twitching motility prot 53.7 4.3 0.00015 46.5 1.6 19 235-253 24-42 (261)
132 3n70_A Transport activator; si 53.2 4.2 0.00014 41.9 1.3 20 234-253 22-41 (145)
133 3pvs_A Replication-associated 53.1 5.2 0.00018 49.3 2.3 39 214-253 29-67 (447)
134 1iqp_A RFCS; clamp loader, ext 52.8 6.5 0.00022 44.4 2.9 36 215-254 29-64 (327)
135 2i4i_A ATP-dependent RNA helic 52.6 4.3 0.00015 47.5 1.4 23 229-253 47-69 (417)
136 3fho_A ATP-dependent RNA helic 51.6 5.2 0.00018 49.5 2.0 26 228-253 150-175 (508)
137 1ofh_A ATP-dependent HSL prote 51.4 5.2 0.00018 45.0 1.8 18 236-253 50-67 (310)
138 3hu3_A Transitional endoplasmi 51.3 4.9 0.00017 50.1 1.7 50 204-253 201-255 (489)
139 3onj_A T-snare VTI1; helix, HA 51.2 23 0.00079 35.5 6.1 60 1664-1736 35-97 (97)
140 3u61_B DNA polymerase accessor 51.0 6.7 0.00023 45.0 2.6 19 236-254 48-66 (324)
141 3pfi_A Holliday junction ATP-d 50.9 7.6 0.00026 44.8 3.1 44 205-253 27-72 (338)
142 1w5s_A Origin recognition comp 50.9 5.3 0.00018 46.8 1.8 25 229-253 40-69 (412)
143 1deq_A Fibrinogen (alpha chain 50.8 85 0.0029 38.5 11.8 93 1714-1806 62-158 (390)
144 3co5_A Putative two-component 49.7 4.5 0.00015 41.6 0.9 21 235-255 26-46 (143)
145 1hqc_A RUVB; extended AAA-ATPa 49.4 9.4 0.00032 43.4 3.5 20 234-253 36-55 (324)
146 1u0j_A DNA replication protein 49.4 6.7 0.00023 45.8 2.3 29 226-254 91-122 (267)
147 1tue_A Replication protein E1; 49.2 4.8 0.00016 45.7 1.0 29 227-255 47-77 (212)
148 2fxo_A Myosin heavy chain, car 48.5 2.6E+02 0.0088 29.2 13.9 47 1705-1751 13-59 (129)
149 1hv8_A Putative ATP-dependent 48.3 5.5 0.00019 45.4 1.4 25 229-254 38-62 (367)
150 2ewv_A Twitching motility prot 47.7 5.1 0.00017 48.2 1.0 26 228-253 128-153 (372)
151 3oiy_A Reverse gyrase helicase 47.4 6.9 0.00023 46.4 2.0 24 228-253 30-53 (414)
152 3swk_A Vimentin; cytoskeleton, 47.3 66 0.0022 31.8 8.5 76 2055-2130 1-76 (86)
153 1xti_A Probable ATP-dependent 47.0 5.9 0.0002 45.8 1.4 25 228-254 39-63 (391)
154 4fcw_A Chaperone protein CLPB; 46.7 9 0.00031 43.4 2.7 38 215-253 21-64 (311)
155 3i5x_A ATP-dependent RNA helic 46.5 7 0.00024 48.3 2.0 25 228-252 103-127 (563)
156 1in4_A RUVB, holliday junction 45.9 8.4 0.00029 45.1 2.4 17 237-253 52-68 (334)
157 1jr3_A DNA polymerase III subu 45.9 9.6 0.00033 44.1 2.9 37 214-254 19-56 (373)
158 2ocy_A RAB guanine nucleotide 45.8 42 0.0014 36.6 7.5 93 1593-1685 37-151 (154)
159 1rif_A DAR protein, DNA helica 45.7 4.8 0.00017 45.5 0.4 23 231-255 125-147 (282)
160 2chq_A Replication factor C sm 45.5 5.9 0.0002 44.6 1.0 21 233-253 35-55 (319)
161 3p30_A HIV-1 GP41; HIV, GP41, 45.5 32 0.0011 34.9 6.1 81 1958-2060 11-91 (96)
162 3hnw_A Uncharacterized protein 45.1 58 0.002 34.7 8.4 73 2040-2126 61-133 (138)
163 2db3_A ATP-dependent RNA helic 44.7 6.8 0.00023 47.3 1.4 23 229-253 88-110 (434)
164 1fuu_A Yeast initiation factor 44.2 5.2 0.00018 46.3 0.3 24 228-253 52-75 (394)
165 4a2p_A RIG-I, retinoic acid in 44.0 7.7 0.00026 47.2 1.8 26 228-255 16-41 (556)
166 1n0w_A DNA repair protein RAD5 43.7 7.3 0.00025 42.3 1.4 32 223-254 8-42 (243)
167 2oap_1 GSPE-2, type II secreti 43.3 8 0.00027 48.6 1.8 20 233-254 259-278 (511)
168 2oqq_A Transcription factor HY 43.3 23 0.00077 31.2 3.9 30 1774-1803 2-31 (42)
169 1w36_D RECD, exodeoxyribonucle 42.6 7.5 0.00026 49.6 1.4 20 236-255 164-183 (608)
170 2dhr_A FTSH; AAA+ protein, hex 42.5 6.1 0.00021 49.6 0.6 51 202-253 26-81 (499)
171 3tbk_A RIG-I helicase domain; 42.5 8.4 0.00029 46.6 1.8 25 228-254 13-37 (555)
172 2ce7_A Cell division protein F 41.9 5.5 0.00019 49.7 0.1 50 203-253 12-66 (476)
173 1sjj_A Actinin; 3-helix bundle 41.6 7.4E+02 0.025 32.5 23.5 42 1722-1763 446-487 (863)
174 3mq9_A Bone marrow stromal ant 41.1 1.5E+02 0.005 36.3 12.3 27 1790-1816 444-470 (471)
175 1kd8_A GABH AIV, GCN4 acid bas 41.1 15 0.00052 31.2 2.5 30 1783-1812 2-31 (36)
176 1wp9_A ATP-dependent RNA helic 40.9 8.4 0.00029 45.1 1.4 36 210-256 8-43 (494)
177 1gd2_E Transcription factor PA 40.5 50 0.0017 31.8 6.3 48 1767-1814 14-61 (70)
178 1sxj_B Activator 1 37 kDa subu 40.4 11 0.00037 42.6 2.1 21 233-253 39-59 (323)
179 2w0m_A SSO2452; RECA, SSPF, un 40.4 8.9 0.0003 41.0 1.4 30 224-253 8-40 (235)
180 1c4o_A DNA nucleotide excision 40.3 13 0.00043 48.1 3.0 46 204-255 2-47 (664)
181 2v4h_A NF-kappa-B essential mo 40.2 1.4E+02 0.0049 31.0 9.9 72 1741-1833 25-99 (110)
182 1gvn_B Zeta; postsegregational 40.2 14 0.00046 42.8 2.9 31 223-253 15-50 (287)
183 2v1x_A ATP-dependent DNA helic 39.9 11 0.00038 47.9 2.4 31 214-254 47-77 (591)
184 2jlq_A Serine protease subunit 39.7 7.5 0.00026 47.4 0.7 26 227-253 11-36 (451)
185 1um8_A ATP-dependent CLP prote 39.6 9.7 0.00033 45.0 1.6 18 236-253 72-89 (376)
186 3a7p_A Autophagy protein 16; c 39.5 93 0.0032 33.9 8.8 59 1654-1740 73-131 (152)
187 2cvh_A DNA repair and recombin 39.3 9.6 0.00033 40.7 1.4 30 224-253 5-37 (220)
188 4gl2_A Interferon-induced heli 38.4 9.4 0.00032 48.4 1.4 26 228-255 16-41 (699)
189 2fwr_A DNA repair protein RAD2 38.2 9.8 0.00034 45.9 1.4 37 210-256 92-128 (472)
190 3sqw_A ATP-dependent RNA helic 38.2 11 0.00038 47.1 2.0 26 228-253 52-77 (579)
191 4b3f_X DNA-binding protein smu 38.0 8.8 0.0003 49.1 1.0 27 228-255 198-224 (646)
192 4fla_A Regulation of nuclear P 38.0 3E+02 0.01 29.8 12.6 121 1595-1745 24-147 (152)
193 2eqb_B RAB guanine nucleotide 38.0 1.1E+02 0.0037 31.3 8.5 41 1621-1661 47-95 (97)
194 1e9r_A Conjugal transfer prote 37.5 7.4 0.00025 46.9 0.2 19 235-253 52-70 (437)
195 3pxg_A Negative regulator of g 37.1 16 0.00055 45.0 3.1 29 227-255 192-220 (468)
196 1gk4_A Vimentin; intermediate 37.0 2.1E+02 0.0071 28.0 10.2 77 1384-1461 2-78 (84)
197 2e7s_A RAB guanine nucleotide 36.6 34 0.0012 36.6 4.9 114 1559-1679 12-133 (135)
198 1qvr_A CLPB protein; coiled co 36.5 8.8 0.0003 50.7 0.7 29 227-255 182-210 (854)
199 1hjb_A Ccaat/enhancer binding 35.8 48 0.0016 33.1 5.5 48 2084-2131 24-71 (87)
200 4ag6_A VIRB4 ATPase, type IV s 35.8 8.5 0.00029 45.8 0.4 18 236-253 35-52 (392)
201 1go4_E MAD1 (mitotic arrest de 35.6 71 0.0024 32.7 6.8 34 732-765 12-45 (100)
202 4a74_A DNA repair and recombin 35.4 12 0.0004 40.3 1.3 30 224-253 10-42 (231)
203 2dr3_A UPF0273 protein PH0284; 35.0 11 0.00036 41.1 0.9 30 224-253 8-40 (247)
204 1ci6_A Transcription factor AT 34.7 56 0.0019 30.5 5.5 46 2085-2130 12-57 (63)
205 1gu4_A CAAT/enhancer binding p 34.5 53 0.0018 32.2 5.5 49 2083-2131 23-71 (78)
206 3hws_A ATP-dependent CLP prote 34.5 9.8 0.00034 44.8 0.6 18 236-253 51-68 (363)
207 1ojl_A Transcriptional regulat 34.1 12 0.00041 43.5 1.3 20 234-253 23-42 (304)
208 2z5i_A TM, general control pro 33.8 25 0.00084 32.1 2.9 34 1787-1823 10-43 (52)
209 3cf2_A TER ATPase, transitiona 33.6 19 0.00065 47.9 3.1 80 203-282 200-293 (806)
210 1sxj_E Activator 1 40 kDa subu 33.2 11 0.00039 43.4 0.8 16 239-254 39-54 (354)
211 1gm5_A RECG; helicase, replica 33.0 17 0.00058 48.1 2.4 39 212-254 369-407 (780)
212 2p5t_B PEZT; postsegregational 32.6 20 0.00067 40.3 2.6 28 225-252 16-48 (253)
213 3pxi_A Negative regulator of g 32.5 19 0.00066 46.7 2.9 38 215-253 495-538 (758)
214 3swk_A Vimentin; cytoskeleton, 32.5 1.7E+02 0.0057 29.0 8.8 74 1652-1750 3-80 (86)
215 2ykg_A Probable ATP-dependent 32.5 17 0.00058 46.1 2.3 23 229-253 23-45 (696)
216 2gk6_A Regulator of nonsense t 32.3 14 0.00048 47.2 1.5 19 237-255 196-214 (624)
217 2r8r_A Sensor protein; KDPD, P 32.0 10 0.00035 43.4 0.2 19 237-255 7-25 (228)
218 1l8d_A DNA double-strand break 31.9 2.6E+02 0.009 27.9 10.4 41 1791-1838 5-45 (112)
219 2oca_A DAR protein, ATP-depend 31.9 11 0.00039 45.8 0.6 36 210-255 112-147 (510)
220 1qvr_A CLPB protein; coiled co 31.8 21 0.00073 47.1 3.1 17 237-253 589-605 (854)
221 1x8y_A Lamin A/C; structural p 31.8 1.4E+02 0.0047 29.5 8.0 77 1384-1461 4-80 (86)
222 3tnu_A Keratin, type I cytoske 31.5 2.5E+02 0.0085 29.4 10.5 80 1380-1460 49-128 (131)
223 3s4r_A Vimentin; alpha-helix, 31.3 1.9E+02 0.0066 28.9 9.1 17 1646-1662 27-43 (93)
224 3upu_A ATP-dependent DNA helic 31.1 17 0.00058 44.5 1.9 37 213-254 27-63 (459)
225 2ehv_A Hypothetical protein PH 30.7 11 0.00036 41.1 0.0 18 237-254 31-48 (251)
226 3lfu_A DNA helicase II; SF1 he 30.5 14 0.00048 46.4 1.1 21 235-255 21-41 (647)
227 3tnu_B Keratin, type II cytosk 30.5 2.5E+02 0.0085 29.2 10.2 78 1380-1458 47-124 (129)
228 2bsg_A Fibritin; viral protein 30.4 1E+02 0.0035 38.8 8.4 116 1783-1905 102-227 (487)
229 4gkw_A Spindle assembly abnorm 30.3 1E+02 0.0034 32.9 7.0 83 2054-2136 11-93 (167)
230 1r6b_X CLPA protein; AAA+, N-t 30.2 23 0.00077 46.0 2.9 38 215-253 462-505 (758)
231 3ghg_A Fibrinogen alpha chain; 30.1 1.4E+02 0.0047 38.0 9.4 51 1714-1764 59-109 (562)
232 2v4h_A NF-kappa-B essential mo 30.0 2.1E+02 0.0071 29.8 9.1 82 1656-1755 24-105 (110)
233 1jnm_A Proto-oncogene C-JUN; B 29.7 84 0.0029 29.1 5.8 44 1771-1814 18-61 (62)
234 2efr_A General control protein 29.7 5.9E+02 0.02 27.9 15.4 95 1590-1688 15-109 (155)
235 4etp_A Kinesin-like protein KA 29.6 74 0.0025 39.0 7.1 56 1778-1833 6-61 (403)
236 3nbx_X ATPase RAVA; AAA+ ATPas 29.4 20 0.00069 45.0 2.2 35 215-255 26-60 (500)
237 1sxj_A Activator 1 95 kDa subu 29.4 17 0.00057 45.3 1.5 18 236-253 77-94 (516)
238 3lw7_A Adenylate kinase relate 29.3 15 0.0005 37.3 0.8 16 238-253 3-18 (179)
239 1r6b_X CLPA protein; AAA+, N-t 29.0 23 0.0008 45.8 2.8 29 227-255 198-226 (758)
240 4a2w_A RIG-I, retinoic acid in 28.4 17 0.00059 48.6 1.4 42 205-256 242-283 (936)
241 4a2q_A RIG-I, retinoic acid in 28.3 19 0.00065 47.0 1.8 26 228-255 257-282 (797)
242 3b85_A Phosphate starvation-in 27.9 19 0.00065 40.0 1.4 26 226-253 14-39 (208)
243 1sjj_A Actinin; 3-helix bundle 27.5 1.2E+03 0.04 30.7 22.5 46 1594-1639 378-429 (863)
244 1ci6_A Transcription factor AT 27.5 88 0.003 29.2 5.5 39 1775-1813 16-54 (63)
245 1oyw_A RECQ helicase, ATP-depe 27.1 13 0.00045 46.3 0.0 25 228-254 34-58 (523)
246 2v6i_A RNA helicase; membrane, 26.8 20 0.00068 43.5 1.5 17 237-253 3-19 (431)
247 2z83_A Helicase/nucleoside tri 26.7 19 0.00067 44.0 1.4 17 237-253 22-38 (459)
248 2zqm_A Prefoldin beta subunit 26.3 1.5E+02 0.005 29.7 7.5 85 1715-1813 9-101 (117)
249 1ypw_A Transitional endoplasmi 25.6 22 0.00077 46.9 1.7 51 203-253 200-255 (806)
250 4a4z_A Antiviral helicase SKI2 25.5 24 0.00084 47.7 2.1 32 211-252 39-70 (997)
251 2va8_A SSO2462, SKI2-type heli 25.4 25 0.00086 45.1 2.1 32 213-253 32-63 (715)
252 2v66_B Nuclear distribution pr 25.0 3.2E+02 0.011 28.5 9.5 90 1649-1742 3-100 (111)
253 1uaa_A REP helicase, protein ( 24.6 20 0.00069 45.8 1.0 21 235-255 14-34 (673)
254 3b9q_A Chloroplast SRP recepto 24.5 29 0.00098 40.7 2.2 16 238-253 102-117 (302)
255 2zts_A Putative uncharacterize 24.5 20 0.00068 38.9 0.8 29 224-252 15-46 (251)
256 3tau_A Guanylate kinase, GMP k 24.5 20 0.00067 39.1 0.7 16 238-253 10-25 (208)
257 2b9c_A Striated-muscle alpha t 24.4 3.2E+02 0.011 29.5 9.9 33 1742-1778 19-51 (147)
258 3hnw_A Uncharacterized protein 24.3 4.1E+02 0.014 28.3 10.6 33 2036-2068 71-103 (138)
259 2d7d_A Uvrabc system protein B 24.3 35 0.0012 44.1 3.1 47 204-255 5-51 (661)
260 2xzl_A ATP-dependent helicase 24.2 23 0.00079 46.9 1.5 19 237-255 376-394 (802)
261 2wjy_A Regulator of nonsense t 24.1 24 0.00081 46.8 1.5 19 237-255 372-390 (800)
262 2orw_A Thymidine kinase; TMTK, 23.9 15 0.00052 39.8 -0.3 18 238-255 5-22 (184)
263 3trf_A Shikimate kinase, SK; a 23.9 21 0.00072 37.4 0.8 15 238-252 7-21 (185)
264 1z63_A Helicase of the SNF2/RA 23.9 23 0.0008 43.0 1.3 26 468-493 177-202 (500)
265 3pxi_A Negative regulator of g 23.8 35 0.0012 44.4 2.9 38 214-255 183-220 (758)
266 2xnx_M M protein, M1-BC1; cell 23.8 2.7E+02 0.0094 30.2 9.0 43 1792-1834 69-111 (146)
267 3rc3_A ATP-dependent RNA helic 23.8 20 0.00068 46.7 0.7 21 231-253 152-172 (677)
268 1yks_A Genome polyprotein [con 23.8 22 0.00076 43.3 1.1 20 232-253 6-25 (440)
269 3e1s_A Exodeoxyribonuclease V, 23.7 22 0.00077 45.2 1.2 20 236-255 204-223 (574)
270 2b8t_A Thymidine kinase; deoxy 23.6 16 0.00053 41.4 -0.3 19 237-255 13-31 (223)
271 1zxa_A CGMP-dependent protein 23.6 84 0.0029 30.2 4.6 50 1042-1091 5-54 (67)
272 2zj8_A DNA helicase, putative 23.5 18 0.00063 46.5 0.3 30 215-253 27-56 (720)
273 1gku_B Reverse gyrase, TOP-RG; 23.4 30 0.001 47.0 2.4 43 1040-1085 652-694 (1054)
274 1t2k_D Cyclic-AMP-dependent tr 23.4 1.5E+02 0.0051 27.3 6.2 39 1772-1810 19-57 (61)
275 4gp7_A Metallophosphoesterase; 23.3 19 0.00064 38.1 0.3 17 238-254 11-27 (171)
276 3ghg_A Fibrinogen alpha chain; 23.3 1.4E+02 0.0048 38.0 7.8 43 1854-1896 112-154 (562)
277 1rz3_A Hypothetical protein rb 23.1 31 0.0011 37.2 2.0 17 237-253 23-39 (201)
278 2efr_A General control protein 23.0 7.7E+02 0.026 27.0 19.4 79 1717-1826 54-132 (155)
279 2i1q_A DNA repair and recombin 22.9 29 0.00099 40.2 1.8 32 223-254 82-116 (322)
280 2qyw_A Vesicle transport throu 22.9 1.5E+02 0.0051 30.0 6.7 49 1665-1733 51-99 (102)
281 2z43_A DNA repair and recombin 22.9 30 0.001 40.5 1.9 30 224-253 92-124 (324)
282 3a2a_A Voltage-gated hydrogen 22.8 1.1E+02 0.0037 28.4 4.9 37 1362-1405 11-47 (58)
283 3tr0_A Guanylate kinase, GMP k 22.7 19 0.00067 38.1 0.3 15 239-253 10-24 (205)
284 1ly1_A Polynucleotide kinase; 22.7 23 0.00079 36.5 0.8 15 238-252 4-18 (181)
285 3iij_A Coilin-interacting nucl 22.7 22 0.00076 37.2 0.7 17 237-253 12-28 (180)
286 2zqm_A Prefoldin beta subunit 22.2 3.6E+02 0.012 26.9 9.4 30 1870-1899 81-110 (117)
287 4h22_A Leucine-rich repeat fli 22.1 1.3E+02 0.0046 30.9 6.0 47 1591-1637 35-81 (103)
288 3c8u_A Fructokinase; YP_612366 21.8 33 0.0011 37.1 1.9 17 237-253 23-39 (208)
289 1rj9_A FTSY, signal recognitio 21.7 24 0.00083 41.4 0.8 17 237-253 103-119 (304)
290 3a00_A Guanylate kinase, GMP k 21.6 22 0.00075 37.8 0.4 15 239-253 4-18 (186)
291 1qhx_A CPT, protein (chloramph 21.5 27 0.00091 36.3 1.0 17 237-253 4-20 (178)
292 2fna_A Conserved hypothetical 21.3 26 0.00091 39.7 1.0 18 237-254 31-48 (357)
293 2w00_A HSDR, R.ECOR124I; ATP-b 21.2 21 0.0007 48.7 0.1 18 238-255 302-319 (1038)
294 1xx6_A Thymidine kinase; NESG, 21.1 19 0.00064 39.7 -0.2 18 238-255 10-27 (191)
295 4fla_A Regulation of nuclear P 21.1 8.1E+02 0.028 26.5 12.5 96 1828-1925 43-141 (152)
296 2px0_A Flagellar biosynthesis 21.1 24 0.00082 41.2 0.6 17 238-254 107-123 (296)
297 2qag_C Septin-7; cell cycle, c 21.0 22 0.00076 43.7 0.3 23 231-253 26-48 (418)
298 1m1j_A Fibrinogen alpha subuni 20.9 7.1E+02 0.024 31.4 13.0 94 1714-1807 60-157 (491)
299 1uii_A Geminin; human, DNA rep 20.9 1.9E+02 0.0064 28.9 6.5 46 1855-1900 27-73 (83)
300 1v5w_A DMC1, meiotic recombina 20.8 34 0.0012 40.4 1.8 31 224-254 107-140 (343)
301 2fic_A Bridging integrator 1; 20.6 9.1E+02 0.031 26.9 13.5 160 1970-2133 50-228 (251)
302 1kgd_A CASK, peripheral plasma 20.5 24 0.00083 37.4 0.5 16 238-253 7-22 (180)
303 2xgj_A ATP-dependent RNA helic 20.5 29 0.001 47.1 1.3 32 212-253 87-118 (1010)
304 2wt7_A Proto-oncogene protein 20.3 1.4E+02 0.0049 27.7 5.5 47 2085-2131 12-58 (63)
305 2pt7_A CAG-ALFA; ATPase, prote 20.3 23 0.0008 41.9 0.3 19 233-253 170-188 (330)
306 1vcs_A Vesicle transport throu 20.2 2.3E+02 0.008 28.5 7.5 50 1665-1734 40-89 (102)
307 1j8m_F SRP54, signal recogniti 20.2 57 0.002 38.1 3.5 17 238-254 100-116 (297)
308 1zp6_A Hypothetical protein AT 20.1 23 0.0008 37.1 0.2 16 238-253 11-26 (191)
309 2gza_A Type IV secretion syste 20.1 24 0.00082 42.2 0.3 19 233-253 174-192 (361)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=2.4e-90 Score=818.54 Aligned_cols=351 Identities=41% Similarity=0.601 Sum_probs=287.7
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCC---CceEEEcCCCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCC
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDT---AQTLVWLGHPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGY 235 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s---~~tiv~~g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGy 235 (2159)
.++||+|+|||||+++.|... +...|+..++ ..++.. ..+.|+||+||+++++|++||+.++.|+|+++|+||
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~-~~~~~v~~~~~~~~~~i~~---~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~ 84 (365)
T 2y65_A 9 AEDSIKVVCRFRPLNDSEEKA-GSKFVVKFPNNVEENCISI---AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGY 84 (365)
T ss_dssp CEEECEEEEEECCCCHHHHHT-TCCBCEECCSSSTTCEEEE---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTC
T ss_pred CCCCeEEEEEcCcCChhHhcc-CCceEEEeCCCCCCcEEEE---CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCC
Confidence 478999999999999988643 3344555443 233332 235799999999999999999999999999999999
Q ss_pred CceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCC
Q 000113 236 NSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLE 315 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~ 315 (2159)
|+||||||||||||||||+|+..+ +..+|||||++++||..+.. ....+.|.|+|||+|||||+|||||+
T Consensus 85 n~tifAYGqTGSGKTyTm~G~~~~-----~~~~Giipr~~~~lF~~i~~-----~~~~~~~~v~vS~~EIYnE~i~DLL~ 154 (365)
T 2y65_A 85 NGTIFAYGQTSSGKTHTMEGVIGD-----SVKQGIIPRIVNDIFNHIYA-----MEVNLEFHIKVSYYEIYMDKIRDLLD 154 (365)
T ss_dssp CEEEEEECSTTSSHHHHHTBSTTC-----TTTBCHHHHHHHHHHHHHHH-----CCSCEEEEEEEEEEEEETTEEEETTC
T ss_pred ceEEEeecCCCCCCceEEecCCCC-----cccCChHHHHHHHHHHHHHh-----ccCCceEEEEEEEEEEECCeeeeccc
Confidence 999999999999999999997432 35689999999999999853 24568999999999999999999999
Q ss_pred CCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccceeEe
Q 000113 316 PSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFA 395 (2159)
Q Consensus 316 p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r~S 395 (2159)
+...++.+++|+.+++||.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+...... ....|
T Consensus 155 ~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~--~~~~s 232 (365)
T 2y65_A 155 VSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQ--KKLSG 232 (365)
T ss_dssp TTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTC--CEEEE
T ss_pred CCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCC--CEeEE
Confidence 9989999999999999999999999999999999999999999999999999999999999999987654332 34679
Q ss_pred EeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEe
Q 000113 396 RLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIAN 475 (2159)
Q Consensus 396 KL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~ 475 (2159)
+|+|||||||||.+++++.|.|++||++||+||++||+||.||++ ++..|||||||||||||||||||||+|+||||
T Consensus 233 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~---~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~ 309 (365)
T 2y65_A 233 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIVIC 309 (365)
T ss_dssp EEEEEECCCCCC----------------CCHHHHHHHHHHHHHHH---CCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEE
T ss_pred EEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCccccCHHHHHHHhhcCCCccEEEEEE
Confidence 999999999999999999999999999999999999999999986 34579999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHHHHH
Q 000113 476 VSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGDVTALQRQIQQLKDKLSSL 530 (2159)
Q Consensus 476 VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~~v~~L~~eIq~LK~eL~~l 530 (2159)
|||+..+++||++||+||+|||.|+|+|++|++++.. .+.+.+++.++++.+|
T Consensus 310 isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~--~~~~~~~~e~~~~~~L 362 (365)
T 2y65_A 310 CSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAE--EWKRRYEKEKEKNARL 362 (365)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSH--HHHHC-----------
T ss_pred ecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHH--HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987653 3444444444444444
No 2
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.2e-89 Score=806.72 Aligned_cols=333 Identities=44% Similarity=0.669 Sum_probs=271.1
Q ss_pred CCceEEEEEeCCCCChhcccCCceeEEecCCC-ceEEEcC-----------CCCceeEeceecCCCCChHHHHHhhchhH
Q 000113 160 DHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTA-QTLVWLG-----------HPETRFTFDHIACEMISQEKLFRVAGLPM 227 (2159)
Q Consensus 160 d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~-~tiv~~g-----------~p~~~FtFD~VFde~aSQEeVFe~v~~PL 227 (2159)
.+||+|+|||||+++.|... +...|+.+++. .++++.. .....|+||+||+++++|++||+.++.|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~-~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRE-NALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPL 81 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHT-TCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCeEEEEEeCCCChhhhcc-CCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHH
Confidence 57899999999999988643 44445555433 2333221 12357999999999999999999999999
Q ss_pred HHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeec
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYN 307 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYN 307 (2159)
|+++|+|||+||||||||||||||||+|+ ++++|||||++++||..+.. ....+.|.|+|||+||||
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~--------~~~~Giipr~~~~lF~~i~~-----~~~~~~~~v~vS~~EIYn 148 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGN--------KEEPGAIPNSFKHLFDAINS-----SSSNQNFLVIGSYLELYN 148 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBC--------SSSBCHHHHHHHHHHHHHHT-----CCTTEEEEEEEEEEEEET
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEeecC--------CccCchHHHHHHHHHHHHHh-----hccCCcEEEEEEEEEEeC
Confidence 99999999999999999999999999997 35789999999999999852 345678999999999999
Q ss_pred ccccccCCCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCC
Q 000113 308 EQITDLLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKD 387 (2159)
Q Consensus 308 EkI~DLL~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~ 387 (2159)
|+|||||++ ...+.+++|+.+|+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....
T Consensus 149 E~i~DLL~~-~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 227 (350)
T 2vvg_A 149 EEIRDLIKN-NTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIE 227 (350)
T ss_dssp TEEEETTTT-EEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC--
T ss_pred CEEEEcccC-CcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccC
Confidence 999999985 4579999999999999999999999999999999999999999999999999999999999998876554
Q ss_pred CccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCC
Q 000113 388 SMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGN 467 (2159)
Q Consensus 388 ~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGN 467 (2159)
+....+.|+|+|||||||||.+++++.|.|++||++||+||++||+||.+|++. ..||||||||||||||||||||
T Consensus 228 ~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~----~~hvPyRdSkLT~lLqdsLgGn 303 (350)
T 2vvg_A 228 NKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG----ATHIPYRDSKLTRLLQDSLGGN 303 (350)
T ss_dssp --CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHT----CSSCCGGGCHHHHHTTTTTTSS
T ss_pred CCccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcC----CCCCCccccHHHHHHHHhcCCC
Confidence 445567899999999999999999999999999999999999999999999874 3799999999999999999999
Q ss_pred ccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccccccCccc
Q 000113 468 SKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASG 511 (2159)
Q Consensus 468 SKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~ 511 (2159)
|+|+|||||||+..+++||++||+||+|||.|+|+|++|+++..
T Consensus 304 skt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 304 SKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred ccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 99999999999999999999999999999999999999998754
No 3
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=4.2e-89 Score=805.66 Aligned_cols=337 Identities=44% Similarity=0.662 Sum_probs=305.4
Q ss_pred CCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC-CCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCce
Q 000113 160 DHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH-PETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSC 238 (2159)
Q Consensus 160 d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~-p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~T 238 (2159)
.+||+|+|||||+++.|... +...|+...+..++..... ....|+||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 5 ~~~i~V~vRvRP~~~~E~~~-~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t 83 (355)
T 1goj_A 5 ANSIKVVARFRPQNRVEIES-GGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT 83 (355)
T ss_dssp SCBCEEEEEECCCCHHHHTT-TCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred CCCeEEEEECCCCChHHhhc-CCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcce
Confidence 67899999999999988643 4455677666666554332 346799999999999999999999999999999999999
Q ss_pred eEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCCCC
Q 000113 239 MFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSS 318 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p~s 318 (2159)
|||||||||||||||+|+..+ .+..+|||||++++||..|.. ....+.|.|+|||+|||||+|||||+|..
T Consensus 84 ifAYGqTGSGKTyTm~G~~~~----~~~~~Giipr~~~~lF~~i~~-----~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 154 (355)
T 1goj_A 84 VFAYGQTGAGKSYTMMGTSID----DPDGRGVIPRIVEQIFTSILS-----SAANIEYTVRVSYMEIYMERIRDLLAPQN 154 (355)
T ss_dssp EEEECSTTSSHHHHHTBSCTT----STTTBCHHHHHHHHHHHHHHT-----SCTTEEEEEEEEEEEEETTEEEETTSTTC
T ss_pred EEEECCCCCCcceEeecCCCC----CcccCCchHHHHHHHHHHHHh-----cccCceEEEEEEEEEEECCEEEEcccCcc
Confidence 999999999999999996322 245789999999999998853 34567899999999999999999999998
Q ss_pred CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccceeEeEeE
Q 000113 319 TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLN 398 (2159)
Q Consensus 319 ~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r~SKL~ 398 (2159)
.++.+++++.+|+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....+ ..+.|+|+
T Consensus 155 ~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~--~~~~skL~ 232 (355)
T 1goj_A 155 DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETG--SAKSGQLF 232 (355)
T ss_dssp CSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTT--EEEEEEEE
T ss_pred CCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCC--ceeeeEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999988654332 35679999
Q ss_pred eeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEeeCC
Q 000113 399 LVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSP 478 (2159)
Q Consensus 399 LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~VSP 478 (2159)
|||||||||.+++++.|.|++||++||+||++||+||.+|++ ++..|||||||||||||||||||||+|+|||||||
T Consensus 233 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~---~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP 309 (355)
T 1goj_A 233 LVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTD---GKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSP 309 (355)
T ss_dssp EEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHH---CSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECC
T ss_pred EEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhc---CCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECc
Confidence 999999999999999999999999999999999999999976 45579999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccccccccccCccc
Q 000113 479 SMCSANETLSTLKFAQRAKLIQNNAKVNENASG 511 (2159)
Q Consensus 479 s~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~ 511 (2159)
+..+++||++||+||+|||.|+|+|++|++++.
T Consensus 310 ~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~ 342 (355)
T 1goj_A 310 SSYNDAETLSTLRFGMRAKSIKNKAKVNAELSP 342 (355)
T ss_dssp BGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSC
T ss_pred ccccHHHHHHHHHHHHHHhhccCCceeCCCCCH
Confidence 999999999999999999999999999998754
No 4
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.1e-88 Score=805.20 Aligned_cols=348 Identities=36% Similarity=0.595 Sum_probs=302.8
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcC--CCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCC
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLG--HPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYN 236 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g--~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN 236 (2159)
+.+||+|+|||||+++.|...... .++...+..++.... .....|+||+||+++++|++||+. +.|+|+++|+|||
T Consensus 3 ~~~~i~V~vRvRP~~~~E~~~~~~-~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n 80 (369)
T 3cob_A 3 MKGKIRVYCRLRPLCEKEIIAKER-NAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYN 80 (369)
T ss_dssp -CCBCEEEEEECCCCHHHHHTTCC-BCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCE
T ss_pred CCCCeEEEEECCCCChhhccCCCc-EEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCc
Confidence 468999999999999988654332 333333333333222 223579999999999999999999 6899999999999
Q ss_pred ceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCC
Q 000113 237 SCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEP 316 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p 316 (2159)
+||||||||||||||||+|+ +.++|||||++.+||..+... ...+.|.|+|||+|||||+|||||+|
T Consensus 81 ~tifAYGqTGSGKTyTM~G~--------~~~~Giipr~~~~lF~~i~~~-----~~~~~~~v~vS~~EIYnE~i~DLL~~ 147 (369)
T 3cob_A 81 VCIFAYGQTGSGKTFTIYGA--------DSNPGLTPRAMSELFRIMKKD-----SNKFSFSLKAYMVELYQDTLVDLLLP 147 (369)
T ss_dssp EEEEEEECTTSSHHHHHTBC--------SSSBCHHHHHHHHHHHHHHHT-----TTTEEEEEEEEEEEECSSCEEESSCC
T ss_pred eEEEEECCCCCCCeEeecCC--------CCCCchhHHHHHHHHHHHHhh-----ccCceeEEEEEEEEEeCceeeecCCC
Confidence 99999999999999999997 357899999999999998532 23478999999999999999999988
Q ss_pred CC---CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCcccee
Q 000113 317 SS---TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFR 393 (2159)
Q Consensus 317 ~s---~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r 393 (2159)
.. ..+.+++|++++++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+..... ....
T Consensus 148 ~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~ 225 (369)
T 3cob_A 148 KQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT--QAIA 225 (369)
T ss_dssp SSSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT--CCEE
T ss_pred cccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC--CcEE
Confidence 53 579999999999999999999999999999999999999999999999999999999999998865433 2356
Q ss_pred EeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEE
Q 000113 394 FARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTII 473 (2159)
Q Consensus 394 ~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MI 473 (2159)
.|+|+|||||||||.+++++.|.|++||++||+||++||+||.||++. ..|||||||||||||||||||||+|+||
T Consensus 226 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~----~~hvPyRdSkLT~lLqdsLgGnskt~mI 301 (369)
T 3cob_A 226 RGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG----NQHIPYRNHKLTMLMSDSLGGNAKTLMF 301 (369)
T ss_dssp EEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTT----CSCCCGGGCHHHHHTTTTTTSSSEEEEE
T ss_pred EEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcC----CCcCCCcCCHHHHHHHHhcCCCccEEEE
Confidence 799999999999999999999999999999999999999999999763 4699999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHHHHHHHhcC
Q 000113 474 ANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGDVTALQRQIQQLKDKLSSLMKHQN 535 (2159)
Q Consensus 474 a~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~~v~~L~~eIq~LK~eL~~l~~~~~ 535 (2159)
|||||+..+++||++||+||+|||.|+|+|.+|.++ .+|.+||.+|..++...+
T Consensus 302 a~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~--------~ei~~L~~~l~~~~~~~~ 355 (369)
T 3cob_A 302 VNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--------KEVARLKKLVSYWKEQAG 355 (369)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC--------HHHHHHHHHTTCC-----
T ss_pred EEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH--------HHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999876 567777777766555443
No 5
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.2e-89 Score=809.72 Aligned_cols=338 Identities=34% Similarity=0.519 Sum_probs=255.1
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC----CCceeEeceecCCCCChHHHHHhhchhHHHHhhcC
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH----PETRFTFDHIACEMISQEKLFRVAGLPMVENCLSG 234 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~----p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeG 234 (2159)
..++|+|+|||||+++.|.. .+...|+...+..++.+... ....|+||+||+++++|++||+.++.|+|+++|+|
T Consensus 19 ~~~~irV~vRvRP~~~~E~~-~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G 97 (388)
T 3bfn_A 19 PPARVRVAVRLRPFVDGTAG-ASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEG 97 (388)
T ss_dssp CCCCCEEEEEECCCC------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTT
T ss_pred CCCCEEEEEECCCCChhhhc-cCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcC
Confidence 47899999999999998853 23445665443333332211 23579999999999999999999999999999999
Q ss_pred CCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccC
Q 000113 235 YNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLL 314 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL 314 (2159)
||+||||||||||||||||+|+ ++++|||||++.+||..+.... .....+.|.|+|||+|||||+|||||
T Consensus 98 ~N~tifAYGqTGSGKTyTM~G~--------~~~~Giipra~~~lF~~i~~~~--~~~~~~~~~V~vS~lEIYnE~i~DLL 167 (388)
T 3bfn_A 98 QNASVLAYGPTGAGKTHTMLGS--------PEQPGVIPRALMDLLQLTREEG--AEGRPWALSVTMSYLEIYQEKVLDLL 167 (388)
T ss_dssp CCEEEEEESCTTSSHHHHHTBC--------SSSBCHHHHHHHHHHHHHHHHT--STTCSEEEEEEEEEEEEETTEEEESS
T ss_pred ceeeEeeecCCCCCCCeEeecC--------ccccchhHHHHHHHHHHHHHhh--ccCCCceEEEEEEEEEEECCeeeehh
Confidence 9999999999999999999997 4578999999999999986421 23456889999999999999999999
Q ss_pred CCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccceeE
Q 000113 315 EPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRF 394 (2159)
Q Consensus 315 ~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r~ 394 (2159)
+|....+.+++|+.+++||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+...... .....
T Consensus 168 ~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~-~~~~~ 246 (388)
T 3bfn_A 168 DPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP-FRQRE 246 (388)
T ss_dssp SCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTT-CCEEE
T ss_pred ccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCC-CceeE
Confidence 99988999999999999999999999999999999999999999999999999999999999999988654332 23467
Q ss_pred eEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEE
Q 000113 395 ARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIA 474 (2159)
Q Consensus 395 SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa 474 (2159)
|+|+|||||||||.+++++.|.|++|+++||+||++||+||.||++. ..|||||||||||||||||||||+|+|||
T Consensus 247 skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~----~~hVPYRdSkLTrlLqdsLgGnskT~mIa 322 (388)
T 3bfn_A 247 GKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQG----LPRVPYRDSKLTRLLQDSLGGSAHSILIA 322 (388)
T ss_dssp EEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTT----CSCCCGGGSHHHHHTTTSSSTTCEEEEEE
T ss_pred EEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcC----CCCCcCcccHHHHHHHHhhCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999753 35999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhhccccccccccCcccc
Q 000113 475 NVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGD 512 (2159)
Q Consensus 475 ~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~~ 512 (2159)
||||+..+++||++||+||+|||.|+|+|.+|++.+..
T Consensus 323 ~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~ 360 (388)
T 3bfn_A 323 NIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPH 360 (388)
T ss_dssp EECCSGGGHHHHHHHHHHHCSEEEEC------------
T ss_pred EECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHH
Confidence 99999999999999999999999999999999987653
No 6
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=4.4e-89 Score=809.05 Aligned_cols=338 Identities=43% Similarity=0.691 Sum_probs=284.4
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCC-ceEEEcCC------CCceeEeceecCCCCChHHHHHhhchhHHHHh
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTA-QTLVWLGH------PETRFTFDHIACEMISQEKLFRVAGLPMVENC 231 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~-~tiv~~g~------p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~v 231 (2159)
..+||+|+|||||+++.|... +...|+.++.. .++.+..+ ..+.|+||+||+++++|++||+.++.|+|+++
T Consensus 19 ~~~~irV~vRvRP~~~~E~~~-~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 97 (372)
T 3b6u_A 19 SSESVRVVVRCRPMNGKEKAA-SYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSV 97 (372)
T ss_dssp --CBCEEEEEECCCCHHHHHT-TCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChhhhcc-CCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHH
Confidence 478999999999999988643 44445555443 33333221 23579999999999999999999999999999
Q ss_pred hcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeeccccc
Q 000113 232 LSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQIT 311 (2159)
Q Consensus 232 LeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~ 311 (2159)
|+|||+||||||||||||||||+|+... +..+|||||++.+||..+.. ...+.|.|+|||+|||||+||
T Consensus 98 l~G~n~tifAYGqTGSGKTyTM~G~~~~-----~~~~Giipr~~~~lF~~i~~------~~~~~~~v~vS~~EIYnE~i~ 166 (372)
T 3b6u_A 98 LQGFNGTIFAYGQTGTGKTYTMEGIRGD-----PEKRGVIPNSFDHIFTHISR------SQNQQYLVRASYLEIYQEEIR 166 (372)
T ss_dssp HTTCCEEEEEEESTTSSHHHHHTBCTTS-----GGGBCHHHHHHHHHHHHHHT------CSSCEEEEEEEEEEEETTEEE
T ss_pred hCCCeeeEEeecCCCCCCCEeEecCCCC-----cccCCcHHHHHHHHHHHhhh------ccCCceEEEEEEEEEeCCEEE
Confidence 9999999999999999999999997432 35679999999999999853 356789999999999999999
Q ss_pred ccCCCCC-CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecC-CCc
Q 000113 312 DLLEPSS-TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEK-DSM 389 (2159)
Q Consensus 312 DLL~p~s-~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~-~~~ 389 (2159)
|||+|.. ..+.+++++.+|+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... ++.
T Consensus 167 DLL~~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~ 246 (372)
T 3b6u_A 167 DLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGE 246 (372)
T ss_dssp ETTSSCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----C
T ss_pred ECCCCCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCC
Confidence 9998864 57999999999999999999999999999999999999999999999999999999999999876432 333
Q ss_pred cceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCcc
Q 000113 390 THFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSK 469 (2159)
Q Consensus 390 t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSK 469 (2159)
...+.|+|+|||||||||.+++++.|.|++||++||+||++||+||.||++ ++..|||||||||||||||||||||+
T Consensus 247 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~---~~~~hvPyRdSkLT~lLqdsLgGnsk 323 (372)
T 3b6u_A 247 NHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVD---GKSTHIPYRDSKLTRLLQDSLGGNAK 323 (372)
T ss_dssp CCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHC---C---CCCGGGSHHHHHTTTTTTSSSE
T ss_pred cceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhc---CCCCCCcccccHHHHHHHHhcCCCcc
Confidence 456789999999999999999999999999999999999999999999975 44579999999999999999999999
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccccccCccc
Q 000113 470 TTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASG 511 (2159)
Q Consensus 470 T~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~ 511 (2159)
|+|||||||+..+++||++||+||+|||.|+|+|++|+++..
T Consensus 324 t~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~ 365 (372)
T 3b6u_A 324 TVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD 365 (372)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC----
T ss_pred EEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHH
Confidence 999999999999999999999999999999999999997653
No 7
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-88 Score=799.22 Aligned_cols=335 Identities=40% Similarity=0.611 Sum_probs=284.8
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecC-CCceEEEcCCCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCc
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQD-TAQTLVWLGHPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNS 237 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~-s~~tiv~~g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~ 237 (2159)
.+++|+|+|||||+++.|..... ..++... ....+. ...+.+.|+||+||+++++|++||+.++.|+|+++|+|||+
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~-~~~v~~~~~~~~i~-~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~ 79 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGE-TAQVYWKTDNNVIY-QVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNG 79 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTT-CCCCCEEEETTEEE-ETTSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCE
T ss_pred CCCCEEEEEECCCCChhhhccCC-CcEEEEeCCCCeEE-ECCCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 36899999999999998864322 2222222 223333 23345689999999999999999999999999999999999
Q ss_pred eeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCCC
Q 000113 238 CMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPS 317 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p~ 317 (2159)
||||||||||||||||+|+ ++++|||||++++||..+.. .....|.|+|||+|||||+|||||++.
T Consensus 80 tifAYGqTGSGKTyTM~G~--------~~~~Giipr~~~~lF~~i~~------~~~~~~~v~vS~~EIYnE~i~DLL~~~ 145 (349)
T 1t5c_A 80 TIFAYGQTASGKTYTMMGS--------EDHLGVIPRAIHDIFQKIKK------FPDREFLLRVSYMEIYNETITDLLCGT 145 (349)
T ss_dssp EEEEEESTTSSHHHHHTBC--------SSSBCHHHHHHHHHHHHGGG------CTTEEEEEEEEEEEEETTEEEESSSSS
T ss_pred ceeeecCCCCCCCeEEecC--------CCCCchHHHHHHHHHHHHHh------CcCCcEEEEEEEEEEeCCEEEEccCCC
Confidence 9999999999999999997 45689999999999998742 245689999999999999999999875
Q ss_pred C--CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCC---ccce
Q 000113 318 S--TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDS---MTHF 392 (2159)
Q Consensus 318 s--~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~---~t~~ 392 (2159)
. .++.+++|+.+|+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+...... ....
T Consensus 146 ~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~ 225 (349)
T 1t5c_A 146 QKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSV 225 (349)
T ss_dssp CTTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CE
T ss_pred CCCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccE
Confidence 4 5799999999999999999999999999999999999999999999999999999999999988654322 2245
Q ss_pred eEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEE
Q 000113 393 RFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTI 472 (2159)
Q Consensus 393 r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~M 472 (2159)
+.|+|+|||||||||.+++++.|.|++||++||+||++||+||.+|++.. +..|||||||||||||||||||||+|+|
T Consensus 226 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~--~~~hvPyRdSkLT~lLqdsLgGnskt~m 303 (349)
T 1t5c_A 226 KVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQ--VGGFINYRDSKLTRILQNSLGGNAKTRI 303 (349)
T ss_dssp EEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTC--CTTSSCGGGSHHHHHTGGGTTSSSEEEE
T ss_pred EEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccC--CCCCCcccccHHHHHHHHhcCCCceEEE
Confidence 77999999999999999999999999999999999999999999998743 2469999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhhccccccccccCccccH
Q 000113 473 IANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENASGDV 513 (2159)
Q Consensus 473 Ia~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s~~v 513 (2159)
||||||+ +++||++||+||+|||.|+|+|++|+++...+
T Consensus 304 I~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~~~ 342 (349)
T 1t5c_A 304 ICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDEL 342 (349)
T ss_dssp EEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC----
T ss_pred EEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCCCC
Confidence 9999997 58999999999999999999999999876543
No 8
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=3.5e-88 Score=816.49 Aligned_cols=336 Identities=43% Similarity=0.667 Sum_probs=274.0
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCc-eEEEcC-----------------CCCceeEeceecCC-------C
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQ-TLVWLG-----------------HPETRFTFDHIACE-------M 213 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~-tiv~~g-----------------~p~~~FtFD~VFde-------~ 213 (2159)
..+||+|+|||||+++.|... +...++.+++.. .+++.. ...+.|+||+||++ .
T Consensus 36 ~~~~vrV~vRvRP~~~~E~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~ 114 (443)
T 2owm_A 36 PGANVRVVVRVRAFLPRELER-NAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHY 114 (443)
T ss_dssp CCEECEEEEEEECCCHHHHHT-TCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTC
T ss_pred CCCCeEEEEEeCCCChHHhhc-CCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccC
Confidence 367899999999999988643 333344444322 222111 12357999999976 4
Q ss_pred CChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhcccc
Q 000113 214 ISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDER 293 (2159)
Q Consensus 214 aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~ 293 (2159)
++|++||+.++.|+|+++|+|||+||||||||||||||||+|+ ++++|||||++++||.+|.... .....
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~--------~~~~GIipr~~~~lF~~i~~~~--~~~~~ 184 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT--------PDQPGLIPRTCEDLFQRIASAQ--DETPN 184 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCC--------TTSCCHHHHHHHHHHHHHHHTT--TTSTT
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecC--------CCCCchHHHHHHHHHHHHHhhh--cccCC
Confidence 8999999999999999999999999999999999999999997 4578999999999999986421 12456
Q ss_pred ceEEEEEeeeeeecccccccCCCCC-----CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCC
Q 000113 294 LKFSCKCSFLEIYNEQITDLLEPSS-----TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSE 368 (2159)
Q Consensus 294 ~~fsVkvSflEIYNEkI~DLL~p~s-----~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~ 368 (2159)
+.|.|+|||+|||||+|||||+|.. ..|.+++|+.+|+||.||+++.|.|++|++.+|..|.++|++++|.||..
T Consensus 185 ~~~~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~ 264 (443)
T 2owm_A 185 ISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDT 264 (443)
T ss_dssp CEEEEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCB
T ss_pred ceEEEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCc
Confidence 8999999999999999999998732 35999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEEEeeecC--CCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCC--
Q 000113 369 SSRSHSVLTCIIESHWEK--DSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQG-- 444 (2159)
Q Consensus 369 SSRSHsIFTI~Ie~~~~~--~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~-- 444 (2159)
|||||+||+|.|.+.... ......+.|+|+|||||||||++++++.|.|++||++||+||++||+||.||++...+
T Consensus 265 SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~ 344 (443)
T 2owm_A 265 SSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSAS 344 (443)
T ss_dssp CTTEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC------
T ss_pred cCCCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccccc
Confidence 999999999999875432 2233456799999999999999999999999999999999999999999999875421
Q ss_pred ----------------CCCCccCCcchhhHHhhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccc
Q 000113 445 ----------------KHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNE 507 (2159)
Q Consensus 445 ----------------K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNe 507 (2159)
+..|||||||||||||||||||||+|+|||||||+ +++||++||+||+|||.|+|+|++|+
T Consensus 345 ~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~ 421 (443)
T 2owm_A 345 RPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQ 421 (443)
T ss_dssp -------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCC
T ss_pred ccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecc
Confidence 24599999999999999999999999999999997 59999999999999999999999998
No 9
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=3e-88 Score=799.48 Aligned_cols=338 Identities=43% Similarity=0.648 Sum_probs=274.5
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCC-ceEEEcC------CCCceeEeceecCCCCChHHHHHhhchhHHHHh
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTA-QTLVWLG------HPETRFTFDHIACEMISQEKLFRVAGLPMVENC 231 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~-~tiv~~g------~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~v 231 (2159)
..+||+|+|||||++..|.... ...|+..++. ..+.... .....|+||+||+++++|++||+.++.|+|+++
T Consensus 6 ~~~~i~V~vRvRP~~~~E~~~~-~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 6 KGKNIQVVVRCRPFNLAERKAS-AHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ---CCEEEEEECCCCHHHHHTT-CCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCChhhhhcC-CceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 4789999999999999886533 3334444333 2332211 123579999999999999999999999999999
Q ss_pred hcCCCceeEeecccCCCcceeeccccccccC---CCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecc
Q 000113 232 LSGYNSCMFAYGQTGSGKTYTMMGEINEVEG---KLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNE 308 (2159)
Q Consensus 232 LeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g---~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNE 308 (2159)
|+|||+||||||||||||||||+|+...... ...+.+|||||++++||..+. ...+.|.|+|||+|||||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~-------~~~~~~~v~vS~~EIYnE 157 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLT-------DNGTEFSVKVSLLEIYNE 157 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTS-------SSSEEEEEEEEEEEEETT
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHh-------ccCceEEEEEEEEEEeCc
Confidence 9999999999999999999999997543211 112357999999999999873 246789999999999999
Q ss_pred cccccCCCCC---CCceeeecCC--CCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEee
Q 000113 309 QITDLLEPSS---TNLQLREDLK--KGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESH 383 (2159)
Q Consensus 309 kI~DLL~p~s---~~L~IrED~k--~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~ 383 (2159)
+|||||+|.. ..+.+++|+. +|+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|...
T Consensus 158 ~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~ 237 (359)
T 1x88_A 158 ELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK 237 (359)
T ss_dssp EEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEE
T ss_pred eeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEe
Confidence 9999998864 4689999974 7899999999999999999999999999999999999999999999999999875
Q ss_pred ecC-CCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhh
Q 000113 384 WEK-DSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQD 462 (2159)
Q Consensus 384 ~~~-~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQD 462 (2159)
... ++....+.|+|+|||||||||.+++++.|.|++||++||+||++||+||.||++. ..|||||||||||||||
T Consensus 238 ~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~----~~hvPyRdSkLT~lLqd 313 (359)
T 1x88_A 238 ETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER----TPHVPYRESKLTRILQD 313 (359)
T ss_dssp EECTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTT----CSCCCGGGSHHHHHTGG
T ss_pred cccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcC----CCCCccccchHHHHHHH
Confidence 432 3334457899999999999999999999999999999999999999999999863 47999999999999999
Q ss_pred hcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccccccC
Q 000113 463 SLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNEN 508 (2159)
Q Consensus 463 SLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed 508 (2159)
||||||+|+|||||||+..+++||++||+||+|||.|+|+|+||+.
T Consensus 314 sLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~~ 359 (359)
T 1x88_A 314 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQK 359 (359)
T ss_dssp GSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC----
T ss_pred HhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCCC
Confidence 9999999999999999999999999999999999999999999973
No 10
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=6e-88 Score=798.66 Aligned_cols=337 Identities=43% Similarity=0.681 Sum_probs=278.6
Q ss_pred CCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC----CCceeEeceecCCC--------CChHHHHHhhchhH
Q 000113 160 DHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH----PETRFTFDHIACEM--------ISQEKLFRVAGLPM 227 (2159)
Q Consensus 160 d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~----p~~~FtFD~VFde~--------aSQEeVFe~v~~PL 227 (2159)
..+|+|+|||||++..|... +...++.+++...++.... ....|+||+||++. ++|++||+.++.|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~-~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~pl 81 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSR-DSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEM 81 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHT-TCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHH
T ss_pred CCCcEEEEECCCCChhhccC-CCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHH
Confidence 46899999999999988643 3334455554443332211 24579999999987 89999999999999
Q ss_pred HHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeec
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYN 307 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYN 307 (2159)
|+++|+|||+||||||||||||||||+|+.. .+++|||||++++||..|.. .....+.|.|+|||+||||
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm~G~~~------~~~~Giipr~~~~lF~~i~~----~~~~~~~~~v~vS~~EIYn 151 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE------KDQQGIIPQLCEDLFSRIND----TTNDNMSYSVEVSYMEIYC 151 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSG------GGCBCHHHHHHHHHHHHHHT----CCCTTEEEEEEEEEEEEET
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEeeCCCc------cCCCccHHHHHHHHHHHHhh----cccCCeeEEEEEEEEEeeC
Confidence 9999999999999999999999999999742 24689999999999999853 2335678999999999999
Q ss_pred ccccccCCCCC-CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecC
Q 000113 308 EQITDLLEPSS-TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEK 386 (2159)
Q Consensus 308 EkI~DLL~p~s-~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~ 386 (2159)
|+|||||+|.. ..+.+++|+.+|+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+....
T Consensus 152 E~v~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 231 (366)
T 2zfi_A 152 ERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHD 231 (366)
T ss_dssp TEEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEEC
T ss_pred CeEEEccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEeccc
Confidence 99999999864 57999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred C--CccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcC--------CCCCCccCCcchh
Q 000113 387 D--SMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQ--------GKHRHVPYRDSRL 456 (2159)
Q Consensus 387 ~--~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~--------~K~~HVPYRDSKL 456 (2159)
. .....+.|+|+|||||||||.+++++.|.|++||++||+||++||+||.||++... ++..|||||||||
T Consensus 232 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkL 311 (366)
T 2zfi_A 232 AETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVL 311 (366)
T ss_dssp TTTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHH
T ss_pred CCCCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHH
Confidence 2 23345679999999999999999999999999999999999999999999997532 2467999999999
Q ss_pred hHHhhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccc
Q 000113 457 TFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNE 507 (2159)
Q Consensus 457 TrLLQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNe 507 (2159)
||||||||||||+|+|||||||+..+++||++||+||+|||.|+|+|.+|.
T Consensus 312 T~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 312 TWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp HHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999985
No 11
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-87 Score=797.61 Aligned_cols=341 Identities=42% Similarity=0.633 Sum_probs=279.9
Q ss_pred CCCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcC----CCCceeEeceecCCCCChHHHHHhhchhHHHHhhc
Q 000113 158 WKDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLG----HPETRFTFDHIACEMISQEKLFRVAGLPMVENCLS 233 (2159)
Q Consensus 158 ~~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g----~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLe 233 (2159)
...+||+|+|||||++..|... +...|+.+.+...++... .....|+||+||+++++|++||+.++.|+|+++|+
T Consensus 20 ~~~~~i~V~vRvRP~~~~E~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~ 98 (373)
T 2wbe_C 20 KSNQNIQVYVRVRPLNSRERCI-RSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLN 98 (373)
T ss_dssp CCCEECEEEEEECCCCHHHHHH-TCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhcc-CCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhC
Confidence 4578999999999999988643 233455555555555432 23467999999999999999999999999999999
Q ss_pred CCCceeEeecccCCCcceeecccccccc---CCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccc
Q 000113 234 GYNSCMFAYGQTGSGKTYTMMGEINEVE---GKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQI 310 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM~G~~~~~~---g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI 310 (2159)
|||+||||||||||||||||+|+..... .....++|||||++++||..+.. ..+.|.|+|||+|||||+|
T Consensus 99 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-------~~~~~~v~vS~~EIYnE~i 171 (373)
T 2wbe_C 99 GYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRM-------MEVEYTMRISYLELYNEEL 171 (373)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHH-------CCSCEEEEEEEEEEETTEE
T ss_pred CceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHh-------cCceEEEEEEEEEEeCCeE
Confidence 9999999999999999999999754211 11235789999999999998853 2468999999999999999
Q ss_pred cccCCCCC-CCceeeecC--CCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecC-
Q 000113 311 TDLLEPSS-TNLQLREDL--KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEK- 386 (2159)
Q Consensus 311 ~DLL~p~s-~~L~IrED~--k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~- 386 (2159)
||||+|.. ..+.+++|+ ++++||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|......
T Consensus 172 ~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 251 (373)
T 2wbe_C 172 CDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGI 251 (373)
T ss_dssp EESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCT
T ss_pred EECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCC
Confidence 99998764 468888874 57899999999999999999999999999999999999999999999999999875432
Q ss_pred CCccceeEeEeEeeeccCCccccCCcCh-hhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcC
Q 000113 387 DSMTHFRFARLNLVDLAGSERQKSSGAE-GDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLG 465 (2159)
Q Consensus 387 ~~~t~~r~SKL~LVDLAGSER~kkTgae-G~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLG 465 (2159)
++....+.|+|+|||||||||.+++++. |.|++||.+||+||++||+||.||++. ..||||||||||||||||||
T Consensus 252 ~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~----~~hvPyRdSkLT~lLqdsLg 327 (373)
T 2wbe_C 252 EGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDR----APHVPYRESKLTRLLQESLG 327 (373)
T ss_dssp TTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHC----SSCCCGGGCHHHHHTHHHHH
T ss_pred CCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcC----CCcCccccchHHHHHHHHhC
Confidence 2333457899999999999999999997 999999999999999999999999863 46999999999999999999
Q ss_pred CCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccccccCcc
Q 000113 466 GNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNENAS 510 (2159)
Q Consensus 466 GNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNed~s 510 (2159)
|||+|+|||||||+..+++||++||+||+|||.|+|+|++|++.+
T Consensus 328 Gnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 328 GRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp SSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 999999999999999999999999999999999999999998653
No 12
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=9.4e-88 Score=786.41 Aligned_cols=321 Identities=43% Similarity=0.613 Sum_probs=291.9
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCCCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCce
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSC 238 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~T 238 (2159)
.++||+|+|||||+++.|... +...|+...+..++... .+.|+||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~~-~~~~~~~~~~~~~~~~~---~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~t 80 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVNR-GDKYIAKFQGEDTVVIA---SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGT 80 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHHH-TCCBCCEEETTTEEEET---TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEEcCCCChhHhcc-CCeeEEEECCCCeEEEC---CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEE
Confidence 478999999999999988643 33445555566665543 35799999999999999999999999999999999999
Q ss_pred eEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCCCC
Q 000113 239 MFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPSS 318 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p~s 318 (2159)
|||||||||||||||+|+..+ +..+|||||++++||..|.. ....+.|.|+|||+|||||+|||||+|..
T Consensus 81 ifAYGqTGSGKTyTm~G~~~~-----~~~~Giipr~~~~lF~~i~~-----~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 150 (325)
T 1bg2_A 81 IFAYGQTSSGKTHTMEGKLHD-----PEGMGIIPRIVQDIFNYIYS-----MDENLEFHIKVSYFEIYLDKIRDLLDVSK 150 (325)
T ss_dssp EEEECSTTSSHHHHHTBSTTC-----TTTBCHHHHHHHHHHHHHHH-----HCSSEEEEEEEEEEEEETTEEEESSCTTC
T ss_pred EEEECCCCCCCceEecccCCC-----cccCccHHHHHHHHHHHHHh-----ccCCceEEEEEEEEEEecCeeeecccCCC
Confidence 999999999999999997432 35679999999999999853 24568999999999999999999999998
Q ss_pred CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccceeEeEeE
Q 000113 319 TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFARLN 398 (2159)
Q Consensus 319 ~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r~SKL~ 398 (2159)
.++.+++|+.+++||.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+..... .....|+|+
T Consensus 151 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skl~ 228 (325)
T 1bg2_A 151 TNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT--EQKLSGKLY 228 (325)
T ss_dssp CSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT--CCEEEEEEE
T ss_pred CCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC--CcEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999998865433 234679999
Q ss_pred eeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEeeCC
Q 000113 399 LVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSP 478 (2159)
Q Consensus 399 LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~VSP 478 (2159)
|||||||||.+++++.|.|++||++||+||++||+||.||++. ..|||||||||||||||||||||+|+|||||||
T Consensus 229 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~----~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP 304 (325)
T 1bg2_A 229 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG----STYVPYRDSKMTRILQDSLGGNCRTTIVICCSP 304 (325)
T ss_dssp EEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTT----CSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECC
T ss_pred EEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcC----CCCCcccccHHHHHHHHHhCCCCcEEEEEEECC
Confidence 9999999999999999999999999999999999999999863 469999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcc
Q 000113 479 SMCSANETLSTLKFAQRAKLI 499 (2159)
Q Consensus 479 s~~n~eETLSTLrFAqRAK~I 499 (2159)
+..+++||++||+||+|||.|
T Consensus 305 ~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 305 SSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp BGGGHHHHHHHHHHHHTSCCC
T ss_pred ccccHHHHHHHHHHHHHhccC
Confidence 999999999999999999987
No 13
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.8e-87 Score=788.27 Aligned_cols=325 Identities=42% Similarity=0.614 Sum_probs=257.3
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcC----------------------CCCceeEeceecCCCCCh
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLG----------------------HPETRFTFDHIACEMISQ 216 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g----------------------~p~~~FtFD~VFde~aSQ 216 (2159)
..+||+|+|||||++..|... +...|+.+.+...+++.. .+...|+||+||+++++|
T Consensus 8 ~~~~i~V~vRvRP~~~~E~~~-~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q 86 (355)
T 3lre_A 8 LCHHMKVVVRVRPENTKEKAA-GFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQ 86 (355)
T ss_dssp ----CEEEEEECCCCHHHHHT-TCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCH
T ss_pred ccCCCEEEEEeCcCChHHHhc-CCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCCh
Confidence 468999999999999998643 444455544433333211 123469999999999999
Q ss_pred HHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceE
Q 000113 217 EKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKF 296 (2159)
Q Consensus 217 EeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~f 296 (2159)
++||+.++.|+|+++|+|||+||||||||||||||||+|+ +.++|||||++.+||..+... .....|
T Consensus 87 ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~--------~~~~Giipr~~~~lf~~i~~~-----~~~~~~ 153 (355)
T 3lre_A 87 SEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS--------ADEPGVMYLTMLHLYKCMDEI-----KEEKIC 153 (355)
T ss_dssp HHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBC--------SSSBCHHHHHHHHHHHHHHHT-----TTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccC--------CCCCCeeehhhhHHHHhhhhh-----ccCceE
Confidence 9999999999999999999999999999999999999997 456799999999999998542 234679
Q ss_pred EEEEeeeeeecccccccCCCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEE
Q 000113 297 SCKCSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVL 376 (2159)
Q Consensus 297 sVkvSflEIYNEkI~DLL~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIF 376 (2159)
.|+|||+|||||+|||||++. .++.+++|+.+|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||
T Consensus 154 ~v~vS~~EIYnE~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if 232 (355)
T 3lre_A 154 STAVSYLEVYNEQIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVF 232 (355)
T ss_dssp EEEEEEEEEETTEEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEE
T ss_pred EEEEEEEEEECCEEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEE
Confidence 999999999999999999875 4799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeecCCC-ccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcch
Q 000113 377 TCIIESHWEKDS-MTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSR 455 (2159)
Q Consensus 377 TI~Ie~~~~~~~-~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSK 455 (2159)
+|+|.+...... ....+.|+|+|||||||||..++++.|.|++||.+||+||++||+||.||++.. ++..||||||||
T Consensus 233 ~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~~~~hiPyRdSk 311 (355)
T 3lre_A 233 QIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSK-RKNQHIPYRNSK 311 (355)
T ss_dssp EEEEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC---------CCGGGSH
T ss_pred EEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCcCCcccCH
Confidence 999988754332 334567999999999999999999999999999999999999999999998743 345799999999
Q ss_pred hhHHhhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q 000113 456 LTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLI 499 (2159)
Q Consensus 456 LTrLLQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~I 499 (2159)
|||||||||||||+|+|||||||+..+++||++||+||+|||.|
T Consensus 312 LT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 312 LTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp HHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999987
No 14
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=2.5e-86 Score=779.51 Aligned_cols=328 Identities=41% Similarity=0.625 Sum_probs=268.3
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCCCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCCce
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGHPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSC 238 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~T 238 (2159)
.+.+|+|+|||||+++.|.. .+...|+.+.+....+..+. ...|+||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~-~~~~~~~~~~~~~~~~~~~~-~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~t 86 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKELL-HGHQSCLQVEPGLGRVTLGR-DRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNAT 86 (344)
T ss_dssp CCCCCEEEEEECCCCHHHHH-TTCCBCEEEEGGGTEEEETT-TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEE
T ss_pred cccceEEEEEecccchHHHh-ccCeeEEEEcCCCceEEecc-cceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCee
Confidence 47899999999999998864 44566777665555555543 46799999999999999999999999999999999999
Q ss_pred eEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCCC-
Q 000113 239 MFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEPS- 317 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p~- 317 (2159)
|||||||||||||||+|+... +..++++|||||++++||..+.. ...+.|.|+|||+|||||+|||||++.
T Consensus 87 ifAYGqTGSGKTyTm~G~~~~--~~~~~~~Giipr~~~~lF~~i~~------~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 158 (344)
T 4a14_A 87 VFAYGQTGSGKTYTMGEASVA--SLLEDEQGIVPRAMAEAFKLIDE------NDLLDCLVHVSYLEVYKEEFRDLLEVGT 158 (344)
T ss_dssp EEEESSTTSSHHHHHCC----------CCCCHHHHHHHHHHHHHHH------CTTSEEEEEEEEEEEETTEEEETTSSCC
T ss_pred EEEecccCCCceEeecccchh--hhhhcccCCchHHHHHHHHhccc------ccceeeEEEEehhhhhHHHHHHHHHhcc
Confidence 999999999999999997432 12356899999999999999853 245789999999999999999999864
Q ss_pred -CCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCC------Ccc
Q 000113 318 -STNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKD------SMT 390 (2159)
Q Consensus 318 -s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~------~~t 390 (2159)
...+.+++|+++++||.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+..... ...
T Consensus 159 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~ 238 (344)
T 4a14_A 159 ASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPG 238 (344)
T ss_dssp CGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------
T ss_pred ccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccc
Confidence 4579999999999999999999999999999999999999999999999999999999999998764321 223
Q ss_pred ceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccE
Q 000113 391 HFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKT 470 (2159)
Q Consensus 391 ~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT 470 (2159)
....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||++.. .+..|||||||||||||||||||||+|
T Consensus 239 ~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~~~~hvPyRdSkLT~lLqdsLgGnskt 317 (344)
T 4a14_A 239 QLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQ-RRGSHIPYRDSKITRILKDSLGGNAKT 317 (344)
T ss_dssp CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTT-TTTSCCCGGGCHHHHHTTTSSSTTSEE
T ss_pred ceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCcc-ccCCCCCcchhhHHHHhHhhcCCCcce
Confidence 4567999999999999999999999999999999999999999999998743 345799999999999999999999999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHhh
Q 000113 471 TIIANVSPSMCSANETLSTLKFAQRAK 497 (2159)
Q Consensus 471 ~MIa~VSPs~~n~eETLSTLrFAqRAK 497 (2159)
+|||||||+..+++||++||+||+|||
T Consensus 318 ~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 318 VMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred EEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 999999999999999999999999997
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=9.2e-86 Score=777.14 Aligned_cols=325 Identities=45% Similarity=0.713 Sum_probs=258.7
Q ss_pred CceEEEEEeCCCCChhcccCCceeEEecCCCceEEEc----------CCCCceeEeceec--------CCCCChHHHHHh
Q 000113 161 HNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWL----------GHPETRFTFDHIA--------CEMISQEKLFRV 222 (2159)
Q Consensus 161 ~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~----------g~p~~~FtFD~VF--------de~aSQEeVFe~ 222 (2159)
.||+|+|||||++..|.... ...++.+++...++.. ....+.|+||+|| ++.++|++||+.
T Consensus 1 S~VkV~vRvRPl~~~E~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~ 79 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLH-TKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKC 79 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHT-CCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccC-CceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHH
Confidence 37999999999999886432 2333444443332211 0123579999999 567899999999
Q ss_pred hchhHHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEee
Q 000113 223 AGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSF 302 (2159)
Q Consensus 223 v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSf 302 (2159)
++.|+|+++|+|||+||||||||||||||||+|+ ++++|||||++++||.++... ....+.|.|+|||
T Consensus 80 ~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~--------~~~~Giipr~~~~lF~~i~~~----~~~~~~~~v~vS~ 147 (354)
T 3gbj_A 80 LGENILQNAFDGYNACIFAYGQTGSGKSYTMMGT--------ADQPGLIPRLCSGLFERTQKE----ENEEQSFKVEVSY 147 (354)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBC--------SSSBCHHHHHHHHHHHHHHHH----CBTTEEEEEEEEE
T ss_pred hhHHHHHHHhCCceeEEEeeCCCCCCCceEEecC--------CCCCchhhHHHHHHHHHHHhh----cccccceeeecee
Confidence 9999999999999999999999999999999997 456899999999999998532 3456789999999
Q ss_pred eeeecccccccCCCCC--CCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEE
Q 000113 303 LEIYNEQITDLLEPSS--TNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCII 380 (2159)
Q Consensus 303 lEIYNEkI~DLL~p~s--~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~I 380 (2159)
+|||||+|+|||+|.. ..+.+++++.+|+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|
T Consensus 148 ~EIYnE~i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v 227 (354)
T 3gbj_A 148 MEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITL 227 (354)
T ss_dssp EEEETTEEEETTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEE
T ss_pred EEEecCeeeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEE
Confidence 9999999999998853 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeeec--CCCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcC--CCCCCccCCcchh
Q 000113 381 ESHWE--KDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQ--GKHRHVPYRDSRL 456 (2159)
Q Consensus 381 e~~~~--~~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~--~K~~HVPYRDSKL 456 (2159)
.+... ..+....+.|+|+|||||||||..++++.|.|++||.+||+||++||+||.||++.+. ++..|||||||||
T Consensus 228 ~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkL 307 (354)
T 3gbj_A 228 THTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVL 307 (354)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHH
T ss_pred EEEecccCCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHH
Confidence 87642 2334446789999999999999999999999999999999999999999999998643 3568999999999
Q ss_pred hHHhhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhc
Q 000113 457 TFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKL 498 (2159)
Q Consensus 457 TrLLQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~ 498 (2159)
||||||||||||+|+|||||||+..+++||++||+||.||+.
T Consensus 308 T~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 308 TWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999985
No 16
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-85 Score=767.18 Aligned_cols=321 Identities=40% Similarity=0.629 Sum_probs=271.6
Q ss_pred CCceEEEEEeCCCCChhcccCCceeEEecC--CCceEEEcC-CCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCCC
Q 000113 160 DHNVQVLIRIRPLSNIEKVSQGYVRCLKQD--TAQTLVWLG-HPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGYN 236 (2159)
Q Consensus 160 d~nVrV~VRVRPls~~E~~s~g~~~cv~~~--s~~tiv~~g-~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN 236 (2159)
.+||+|+|||||+++.|....+...++.++ ....+.... .....|+||+||+++++|++||+.+ .|+|+++|+|||
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~n 81 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGFN 81 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHHTTCC
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHhCCCE
Confidence 679999999999998886433333334433 233332221 2235799999999999999999985 899999999999
Q ss_pred ceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCCC
Q 000113 237 SCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLEP 316 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~p 316 (2159)
+||||||||||||||||+|+ +.++|||||++++||..+.. ....+.|.|+|||+|||||+|||||++
T Consensus 82 ~tifAYGqTGSGKTyTm~G~--------~~~~Giipr~~~~lF~~i~~-----~~~~~~~~v~vS~~EIYnE~i~DLL~~ 148 (330)
T 2h58_A 82 VCIFAYGQTGAGKTYTMEGT--------AENPGINQRALQLLFSEVQE-----KASDWEYTITVSAAEIYNEVLRDLLGK 148 (330)
T ss_dssp EEEEEESSTTSSHHHHHTBC--------SSSBCHHHHHHHHHHHHHHT-----SCTTEEEEEEEEEEEEETTEEEETTSC
T ss_pred EEEEeECCCCCCCcEEEecC--------CCCCcHHHHHHHHHHHhhhc-----ccCCceEEEEEEEEEEECCChhhcccc
Confidence 99999999999999999997 45689999999999999852 345678999999999999999999987
Q ss_pred CC-CCc--eeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCcccee
Q 000113 317 SS-TNL--QLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFR 393 (2159)
Q Consensus 317 ~s-~~L--~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r 393 (2159)
.. ..+ ++++|+.++++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+.....+ ...
T Consensus 149 ~~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~--~~~ 226 (330)
T 2h58_A 149 EPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTG--LRT 226 (330)
T ss_dssp SSCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTT--EEE
T ss_pred cccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCC--cEE
Confidence 53 334 4456889999999999999999999999999999999999999999999999999999987654332 346
Q ss_pred EeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEE
Q 000113 394 FARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTII 473 (2159)
Q Consensus 394 ~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MI 473 (2159)
.|+|+|||||||||.+++++.|.|++|+++||+||++||+||.||++ +..|||||||||||||||||||||+|+||
T Consensus 227 ~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~----~~~hvPyRdSkLT~lL~dsLgGns~t~mI 302 (330)
T 2h58_A 227 TGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS----RQGHVPFRNSKLTYLLQDSLSGDSKTLMV 302 (330)
T ss_dssp EEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHTHHHHSTTCEEEEE
T ss_pred EEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhc----CCCCCcccccHHHHHHHHHhCCCceEEEE
Confidence 79999999999999999999999999999999999999999999975 35799999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhhccc
Q 000113 474 ANVSPSMCSANETLSTLKFAQRAKLIQ 500 (2159)
Q Consensus 474 a~VSPs~~n~eETLSTLrFAqRAK~Ik 500 (2159)
|||||+..+++||++||+||+|||.|+
T Consensus 303 ~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 303 VQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred EEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999986
No 17
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=6.4e-85 Score=768.25 Aligned_cols=326 Identities=37% Similarity=0.567 Sum_probs=263.4
Q ss_pred CCceEEEEEeCCCCC-hhcccCCceeEEe-cCC---CceEEEcC----CCCceeEeceecCCCCChHHHHHhhchhHHHH
Q 000113 160 DHNVQVLIRIRPLSN-IEKVSQGYVRCLK-QDT---AQTLVWLG----HPETRFTFDHIACEMISQEKLFRVAGLPMVEN 230 (2159)
Q Consensus 160 d~nVrV~VRVRPls~-~E~~s~g~~~cv~-~~s---~~tiv~~g----~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~ 230 (2159)
.+||+|+|||||+++ .|.. .....++. .+. ...+.+.. .....|+||+||+++++|++||+.+ .|+|++
T Consensus 2 k~nIrV~vRvRP~~~~~e~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~ 79 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENS-DTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQS 79 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCC-TTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGG
T ss_pred CCCeEEEEEeCCCCcccccC-CCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHHH
Confidence 579999999999987 3422 12122222 111 12232221 1235799999999999999999986 599999
Q ss_pred hhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccc
Q 000113 231 CLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQI 310 (2159)
Q Consensus 231 vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI 310 (2159)
+|+|||+||||||||||||||||+|+ ++|||||++++||..|... ....+.|.|+|||+|||||+|
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTM~G~----------~~Giipr~~~~lF~~i~~~----~~~~~~~~v~vS~~EIYnE~i 145 (347)
T 1f9v_A 80 SLDGYNVCIFAYGQTGSGKTFTMLNP----------GDGIIPSTISHIFNWINKL----KTKGWDYKVNCEFIEIYNENI 145 (347)
T ss_dssp GGGTCCEEEEEECCTTSSHHHHHHST----------TTSHHHHHHHHHHHHHHHH----GGGTCEEEEEEEEEEEETTEE
T ss_pred hcCCceeEEEEECCCCCCCcEeccCC----------CCCchHHHHHHHHHHHHhh----hhcCCceEEEEEEEEEECCee
Confidence 99999999999999999999999995 3699999999999998643 234678999999999999999
Q ss_pred cccCCCCCC---------Cceeeec-CCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEE
Q 000113 311 TDLLEPSST---------NLQLRED-LKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCII 380 (2159)
Q Consensus 311 ~DLL~p~s~---------~L~IrED-~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~I 380 (2159)
||||+|... .+.++++ ..++++|.|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|
T Consensus 146 ~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v 225 (347)
T 1f9v_A 146 VDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHL 225 (347)
T ss_dssp EETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEE
T ss_pred eeccCCccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEE
Confidence 999987643 4677776 467899999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHh
Q 000113 381 ESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLL 460 (2159)
Q Consensus 381 e~~~~~~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLL 460 (2159)
.+.....+ ....|+|+|||||||||++++++.|.|++||++||+||++||+||.||++.. ++..|||||||||||||
T Consensus 226 ~~~~~~~~--~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~~~~hiPyRdSkLT~lL 302 (347)
T 1f9v_A 226 SGSNAKTG--AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD-STKRHIPFRNSKLTYLL 302 (347)
T ss_dssp EEECC--C--CEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCCCGGGSHHHHHH
T ss_pred EEecCCCC--ceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhccc-CCCCcCccccCHHHHHH
Confidence 87643322 3467999999999999999999999999999999999999999999998643 23579999999999999
Q ss_pred hhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccc
Q 000113 461 QDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAK 504 (2159)
Q Consensus 461 QDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~ 504 (2159)
||||||||+|+|||||||+..+++||++||+||+||+.|++.++
T Consensus 303 qdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 303 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp HHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred HHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999999999999998764
No 18
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1.1e-84 Score=766.91 Aligned_cols=326 Identities=37% Similarity=0.551 Sum_probs=259.6
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEe-cCC---CceEEEcCC----CCceeEeceecCCCCChHHHHHhhchhHHHH
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLK-QDT---AQTLVWLGH----PETRFTFDHIACEMISQEKLFRVAGLPMVEN 230 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~-~~s---~~tiv~~g~----p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~ 230 (2159)
..+||+|+|||||+++.|..... ..++. .+. ...+.+... ....|+||+||+|+++|++||+.+ .|+|++
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~ 80 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDMS-HILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQS 80 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCCT-TEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHH-HHHHHG
T ss_pred CCCCcEEEEEeCCCCccccccCc-eEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHH-HHHHHH
Confidence 46899999999999988865432 23332 111 122322211 124699999999999999999986 599999
Q ss_pred hhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccc
Q 000113 231 CLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQI 310 (2159)
Q Consensus 231 vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI 310 (2159)
+|+|||+||||||||||||||||+|+ ++|||||++++||..+... ....+.|.|+|||+|||||+|
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm~g~----------~~Giipr~~~~lF~~~~~~----~~~~~~~~v~vS~~EIYnE~i 146 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTMLNA----------GDGMIPMTLSHIFKWTANL----KERGWNYEMECEYIEIYNETI 146 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHHHST----------TTSHHHHHHHHHHHHHHHH----GGGTEEEEEEEEEEEEETTEE
T ss_pred HHCCcceeEEEeCCCCCCCceEeCCC----------CCchhhHHHHHHHHHHHHh----hhcCceeEEEEEEEEEEcchh
Confidence 99999999999999999999999995 3599999999999998643 234689999999999999999
Q ss_pred cccCCCCC-----------CCceeeecC-CCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEE
Q 000113 311 TDLLEPSS-----------TNLQLREDL-KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTC 378 (2159)
Q Consensus 311 ~DLL~p~s-----------~~L~IrED~-k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI 378 (2159)
+|||+|.. ..+.+++++ .+|+||.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|
T Consensus 147 ~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 226 (349)
T 3t0q_A 147 LDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMV 226 (349)
T ss_dssp EETTC---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEE
T ss_pred hccccccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEE
Confidence 99998743 457777765 567999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhH
Q 000113 379 IIESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTF 458 (2159)
Q Consensus 379 ~Ie~~~~~~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTr 458 (2159)
+|.+.....+ ....|+|+|||||||||.+++++.|.|++||.+||+||++||+||.||++... +..|||||||||||
T Consensus 227 ~v~~~~~~~~--~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~-~~~hiPyRdSkLT~ 303 (349)
T 3t0q_A 227 HINGRNLHTG--ETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA-GKRYIPFRNSKLTY 303 (349)
T ss_dssp EEEEEETTTC--CEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTG-GGSCCCGGGSHHHH
T ss_pred EEEEEecCCC--CeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccC-CCCcCCCcCCHHHH
Confidence 9988754433 24579999999999999999999999999999999999999999999987532 34699999999999
Q ss_pred HhhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhcccccc
Q 000113 459 LLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNA 503 (2159)
Q Consensus 459 LLQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~ 503 (2159)
||||||||||+|+|||||||+..+++||++||+||+||+.|+..+
T Consensus 304 lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 304 LLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp HHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred HHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999999999999999998654
No 19
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.3e-85 Score=773.69 Aligned_cols=328 Identities=38% Similarity=0.517 Sum_probs=250.0
Q ss_pred cCCCCceEEEEEeCCCCChhcccCCceeEEec------CCCceEEEcC--------------CCCceeEeceecCCCCCh
Q 000113 157 FWKDHNVQVLIRIRPLSNIEKVSQGYVRCLKQ------DTAQTLVWLG--------------HPETRFTFDHIACEMISQ 216 (2159)
Q Consensus 157 ~~~d~nVrV~VRVRPls~~E~~s~g~~~cv~~------~s~~tiv~~g--------------~p~~~FtFD~VFde~aSQ 216 (2159)
....+||+|+|||||+++.|........++.. ....++++.. .+...|+||+||+++++|
T Consensus 18 ~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q 97 (376)
T 2rep_A 18 GSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQ 97 (376)
T ss_dssp -----CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCH
T ss_pred hccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccc
Confidence 34688999999999999988643211111111 1122222111 123469999999999999
Q ss_pred HHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceE
Q 000113 217 EKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKF 296 (2159)
Q Consensus 217 EeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~f 296 (2159)
++||+.++ |+|+++|+|||+||||||||||||||||+|+... .+..+|||||++++||..+... ....+.|
T Consensus 98 ~~Vy~~v~-~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~----~~~~~Giipr~~~~lF~~i~~~----~~~~~~~ 168 (376)
T 2rep_A 98 DEVFEEIA-MLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG----DPQLEGLIPRALRHLFSVAQEL----SGQGWTY 168 (376)
T ss_dssp HHHHHHHH-HHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSC----CGGGBCHHHHHHHHHHHHHHHG----GGGTEEE
T ss_pred hhhhhhHH-HHHHHhcCCCceEEEEeCCCCCCCceEeecCCCC----CcccCCcHHHHHHHHHHHHHHh----hcCCeEE
Confidence 99999965 9999999999999999999999999999997432 1356899999999999998532 2346899
Q ss_pred EEEEeeeeeecccccccCCCC-----CCCceeeec--CCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCC
Q 000113 297 SCKCSFLEIYNEQITDLLEPS-----STNLQLRED--LKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSES 369 (2159)
Q Consensus 297 sVkvSflEIYNEkI~DLL~p~-----s~~L~IrED--~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~S 369 (2159)
.|+|||+|||||+|||||+|. ...+.++++ +.++++|.|++++.|.|++|++.+|..|.++|++++|.||..|
T Consensus 169 ~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~S 248 (376)
T 2rep_A 169 SFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERS 248 (376)
T ss_dssp EEEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CG
T ss_pred EEEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCC
Confidence 999999999999999999875 246788888 6789999999999999999999999999999999999999999
Q ss_pred CCceeEEEEEEEeeecCCCccceeEeEeEeeeccCCccccCCcChh----hHHHHHHHhhhhhHHHHHHHHHHhhhcCCC
Q 000113 370 SRSHSVLTCIIESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEG----DRLKEAANINKSLSTLGLVIMSLVDSAQGK 445 (2159)
Q Consensus 370 SRSHsIFTI~Ie~~~~~~~~t~~r~SKL~LVDLAGSER~kkTgaeG----~RLkEa~nINKSLsaLG~VI~ALae~a~~K 445 (2159)
||||+||+|.|.+...... ....|+|+|||||||||.+++++.| .|++||.+||+||++||+||.||++ +
T Consensus 249 SRSH~Ifti~v~~~~~~~~--~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~----~ 322 (376)
T 2rep_A 249 SRSHSVFQLQISGEHSSRG--LQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSN----K 322 (376)
T ss_dssp GGSEEEEEEEEEEEESSSC--CEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHT----T
T ss_pred CCceEEEEEEEEEEecCCC--cEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhc----C
Confidence 9999999999987654332 3457999999999999999999999 9999999999999999999999975 3
Q ss_pred CCCccCCcchhhHHhhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q 000113 446 HRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLI 499 (2159)
Q Consensus 446 ~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~I 499 (2159)
..|||||||||||||||||||||+|+|||||||+..+++||++||+||+|++.+
T Consensus 323 ~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 323 ESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp CSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred CCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999999999999999999999999863
No 20
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-85 Score=772.62 Aligned_cols=320 Identities=37% Similarity=0.579 Sum_probs=252.8
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEc------------CCCCceeEeceecCCCCChHHHHHhhchh
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWL------------GHPETRFTFDHIACEMISQEKLFRVAGLP 226 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~------------g~p~~~FtFD~VFde~aSQEeVFe~v~~P 226 (2159)
..+||+|+|||||+++.+... +...++..++.+. ......|+||+||+ +++|++||+.+++|
T Consensus 22 ~~~~i~V~vRvRP~~~~e~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~p 95 (359)
T 3nwn_A 22 TRKKVHAFVRVKPTDDFAHEM-----IRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKD 95 (359)
T ss_dssp --CCEEEEEEECCCSSCCTTT-----EEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHH
T ss_pred CCCCEEEEEEcCCCCcccccc-----eeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHH
Confidence 478999999999998755321 1111122222211 11234699999997 58999999999999
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeee
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIY 306 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIY 306 (2159)
+|+++|+|||+||||||||||||||||+|+... ..++|||||++++||..+.. ...+.|.|+|||+|||
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~-----~~~~Giipra~~~lF~~~~~------~~~~~~~v~vS~~EIY 164 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMMGATEN-----YKHRGILPRALQQVFRMIEE------RPTHAITVRVSYLEIY 164 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSC-----GGGBCHHHHHHHHHHHHHHT------CTTSCEEEEEEEEEEE
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeCCccCC-----ccchhhHHHHHHHHHHHhhc------CCCCcEEEEEEEEEEe
Confidence 999999999999999999999999999997432 34689999999999998742 3456899999999999
Q ss_pred cccccccCCCC------CCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEE
Q 000113 307 NEQITDLLEPS------STNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCII 380 (2159)
Q Consensus 307 NEkI~DLL~p~------s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~I 380 (2159)
||+|||||++. ...+.+++++ .|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|
T Consensus 165 nE~i~DLL~~~~~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i 243 (359)
T 3nwn_A 165 NESLFDLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYL 243 (359)
T ss_dssp TTEEEETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEE
T ss_pred ccccccccccccccccccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEE
Confidence 99999999863 2346677775 5799999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHh
Q 000113 381 ESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLL 460 (2159)
Q Consensus 381 e~~~~~~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLL 460 (2159)
..............|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.||++ ++..|||||||||||||
T Consensus 244 ~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~---~~~~hVPYRdSkLT~lL 320 (359)
T 3nwn_A 244 EAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGD---QKRDHIPFRQCKLTHAL 320 (359)
T ss_dssp EEC-------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC--------CCGGGSHHHHHT
T ss_pred EeecccccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHh---cCCCcCCcccCHHHHHH
Confidence 876655444556779999999999999999999999999999999999999999999975 34579999999999999
Q ss_pred hhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q 000113 461 QDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLI 499 (2159)
Q Consensus 461 QDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~I 499 (2159)
||||||||+|+|||||||+..+++||++||+||+|||.|
T Consensus 321 qdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 321 KDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp HHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999987
No 21
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.3e-84 Score=773.60 Aligned_cols=325 Identities=35% Similarity=0.494 Sum_probs=256.7
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC----------CCceeEeceecCCCCChHHHHHhhchhHH
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH----------PETRFTFDHIACEMISQEKLFRVAGLPMV 228 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~----------p~~~FtFD~VFde~aSQEeVFe~v~~PLV 228 (2159)
.+++|+|+|||||++..|... +...|+.+.+...+++..+ ....|+||+||+++++|++||+.++.|+|
T Consensus 49 ~~~~I~V~vRvRP~~~~E~~~-~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv 127 (387)
T 2heh_A 49 EEHRICVCVRKRPLNKQELAK-KEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 127 (387)
T ss_dssp CCCSEEEEEEECCCCHHHHHT-TCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCeEEEEECCCCChHHhcc-CCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHH
Confidence 488999999999999988643 3344555555544443211 12469999999999999999999999999
Q ss_pred HHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecc
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNE 308 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNE 308 (2159)
+++|+|||+||||||||||||||||+|+.... .....+|||||++++||..+... ....+.|.|+|||+|||||
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~--~~~~~~Giipr~~~~lF~~~~~~----~~~~~~~~V~vS~~EIYnE 201 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGK--AQNASKGIYAMASRDVFLLKNQP----CYRKLGLEVYVTFFEIYNG 201 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC-------------CCHHHHHHHHHHHHHTSH----HHHTTTCEEEEEEEEEETT
T ss_pred HHHhcCCceEEEEecCCCCCCCeEeccCCCCC--CcccCCceehhhHHHHHHHhhcc----cccCceEEEEEEEEEecCC
Confidence 99999999999999999999999999974321 12457899999999999987432 1235689999999999999
Q ss_pred cccccCCCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCC
Q 000113 309 QITDLLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDS 388 (2159)
Q Consensus 309 kI~DLL~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~ 388 (2159)
+|||||++. ..+.+++|+++|+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+.
T Consensus 202 ~v~DLL~~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----- 275 (387)
T 2heh_A 202 KLFDLLNKK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK----- 275 (387)
T ss_dssp EEEETTTTT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS-----
T ss_pred eEEECCCCC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC-----
Confidence 999999875 46999999999999999999999999999999999999999999999999999999999999764
Q ss_pred ccceeEeEeEeeeccCCccccCCc-ChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhh-cCC
Q 000113 389 MTHFRFARLNLVDLAGSERQKSSG-AEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDS-LGG 466 (2159)
Q Consensus 389 ~t~~r~SKL~LVDLAGSER~kkTg-aeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDS-LGG 466 (2159)
....|+|+|||||||||..+++ +.|.+++|+++||+||++||+||.||++ +..|||||||||||||||| |||
T Consensus 276 --~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~----~~~hvPYRdSKLTrlLqdsllGg 349 (387)
T 2heh_A 276 --GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGE 349 (387)
T ss_dssp --SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHTGGGGSST
T ss_pred --CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhc----CCCCCCccccHHHHHHhhhccCC
Confidence 1356999999999999998886 4678899999999999999999999975 3579999999999999999 599
Q ss_pred CccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccc
Q 000113 467 NSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNN 502 (2159)
Q Consensus 467 NSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~ 502 (2159)
||+|+|||||||+..+++||++||+||+|||.|++.
T Consensus 350 nskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 350 NSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp TEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999999999999999999999999999999999874
No 22
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.1e-84 Score=769.30 Aligned_cols=327 Identities=31% Similarity=0.433 Sum_probs=271.2
Q ss_pred ceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC----------CCceeEeceecCCCCChHHHHHhhchhHHHHh
Q 000113 162 NVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH----------PETRFTFDHIACEMISQEKLFRVAGLPMVENC 231 (2159)
Q Consensus 162 nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~----------p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~v 231 (2159)
||+|+|||||+++.|... +...|+.+.+..++++..+ ....|+||+||+++++|++||+.++.|+|.++
T Consensus 1 ~IrV~vRvRP~~~~E~~~-~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 79 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKK-KDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDL 79 (360)
T ss_dssp CEEEEEEECCCCHHHHHT-TCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CeEEEEECCCCChHHhcc-CCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhh
Confidence 699999999999988643 3344555555554443211 12469999999999999999999999999999
Q ss_pred hc-CCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccc
Q 000113 232 LS-GYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQI 310 (2159)
Q Consensus 232 Le-GyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI 310 (2159)
|. ||||||||||||||||||||+|+... ...+.+|||||++.+||..+... .....|.|+|||+|||||+|
T Consensus 80 ~~~G~n~tifAYGqTGSGKTyTM~G~~~~---~~~~~~Giipr~~~~lF~~i~~~-----~~~~~~~v~vS~~EIYnE~v 151 (360)
T 1ry6_A 80 YENGCVCSCFAYGQTGSGKTYTMLGSQPY---GQSDTPGIFQYAAGDIFTFLNIY-----DKDNTKGIFISFYEIYCGKL 151 (360)
T ss_dssp HHHCCEEEEEEECCTTSSHHHHHHBSSST---TTSSCBCHHHHHHHHHHHHHHHH-----CSSSCEEEEEEEEEEETTEE
T ss_pred ccCCceeEEEeeCCCCCCCCEEEecCCCC---CCccCCCcHHHHHHHHHHHHHhh-----ccCCceEEEEEEEEeeCCee
Confidence 95 99999999999999999999997422 12467899999999999998532 34568999999999999999
Q ss_pred cccCCCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCcc
Q 000113 311 TDLLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMT 390 (2159)
Q Consensus 311 ~DLL~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t 390 (2159)
||||++.. .+.++++++++++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+.. .
T Consensus 152 ~DLL~~~~-~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~-----~ 225 (360)
T 1ry6_A 152 YDLLQKRK-MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN-----K 225 (360)
T ss_dssp EESCCC------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT-----T
T ss_pred EEcccCCc-cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc-----C
Confidence 99998764 57788999999999999999999999999999999999999999999999999999999997642 2
Q ss_pred ceeEeEeEeeeccCCccccCCcChh-hHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCcc
Q 000113 391 HFRFARLNLVDLAGSERQKSSGAEG-DRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSK 469 (2159)
Q Consensus 391 ~~r~SKL~LVDLAGSER~kkTgaeG-~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSK 469 (2159)
....|+|+|||||||||.+++++.| .+++||++||+||++||+||.||+. +..|||||||||||||||||||||+
T Consensus 226 ~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGnsk 301 (360)
T 1ry6_A 226 NTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS----DKNHIPFRDSELTKVLRDIFVGKSK 301 (360)
T ss_dssp TEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTT----STTSCCGGGCHHHHHTGGGGSSSCE
T ss_pred CcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhc----CCCCCccccCHHHHHHHHHhCCCCe
Confidence 2457999999999999999999876 5789999999999999999999964 3579999999999999999999999
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHHHhhcccccccccc
Q 000113 470 TTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVNE 507 (2159)
Q Consensus 470 T~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VNe 507 (2159)
|+|||||||+..+++||++||+||+|||.|+|.|..|.
T Consensus 302 t~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 302 SIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 99999999999999999999999999999999766664
No 23
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=2.3e-84 Score=775.61 Aligned_cols=327 Identities=35% Similarity=0.507 Sum_probs=262.0
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC----------CCceeEeceecCCCCChHHHHHhhchhHH
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH----------PETRFTFDHIACEMISQEKLFRVAGLPMV 228 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~----------p~~~FtFD~VFde~aSQEeVFe~v~~PLV 228 (2159)
.+++|+|+|||||++..|... +...|+.+.+...+++..+ ....|+||+||+++++|++||+.++.|+|
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~-~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV 147 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAK-KEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 147 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHT-TCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCeEEEEEeCCCChhHhhc-CCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHH
Confidence 488999999999999988643 3444566655555443211 12469999999999999999999999999
Q ss_pred HHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecc
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNE 308 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNE 308 (2159)
+++|+|||+||||||||||||||||+|+.... .....+|||||++.+||..+... ....+.|.|+|||+|||||
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~--~~~~~~Giipra~~~lF~~~~~~----~~~~~~~~V~vS~lEIYnE 221 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGK--SQNASKGIYAMASRDVFLLKNQP----RYRNLNLEVYVTFFEIYNG 221 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHHCBC------CBGGGSHHHHHHHHHHHHHTSH----HHHTTCCEEEEEEEEEETT
T ss_pred HHHhcCCceeEEeecCCCCCCCeEeecCCCCC--CccccCcchhhhHHHHHHHHhhh----cccCccEEEEEEEEEeeCC
Confidence 99999999999999999999999999974321 12346899999999999987432 2235789999999999999
Q ss_pred cccccCCCCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCC
Q 000113 309 QITDLLEPSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDS 388 (2159)
Q Consensus 309 kI~DLL~p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~ 388 (2159)
+|||||++. ..+.+++|+.+|+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+.
T Consensus 222 ~i~DLL~~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----- 295 (410)
T 1v8k_A 222 KVFDLLNKK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK----- 295 (410)
T ss_dssp EEEETTTTT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS-----
T ss_pred EEEECCCCC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC-----
Confidence 999999875 57999999999999999999999999999999999999999999999999999999999999764
Q ss_pred ccceeEeEeEeeeccCCccccCCc-ChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhh-cCC
Q 000113 389 MTHFRFARLNLVDLAGSERQKSSG-AEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDS-LGG 466 (2159)
Q Consensus 389 ~t~~r~SKL~LVDLAGSER~kkTg-aeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDS-LGG 466 (2159)
....|+|+|||||||||..+++ +.|.+++|+++||+||++||+||.||+. +..|||||||||||||||| |||
T Consensus 296 --~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~----~~~hIPYRdSKLTrLLqdsllGg 369 (410)
T 1v8k_A 296 --GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGE 369 (410)
T ss_dssp --SSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC----------CCCCHHHHHTTHHHHSS
T ss_pred --CcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhc----CCCCCCcccchhHHHHhhcccCC
Confidence 1356999999999999998886 4678899999999999999999999974 3579999999999999999 599
Q ss_pred CccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccc
Q 000113 467 NSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAK 504 (2159)
Q Consensus 467 NSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~ 504 (2159)
||+|+|||||||+..+++||++||+||+|||.|..+|.
T Consensus 370 nskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 370 NSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp SEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred CceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999999999987663
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=2.4e-84 Score=765.74 Aligned_cols=320 Identities=36% Similarity=0.582 Sum_probs=254.4
Q ss_pred CCCCceEEEEEeCCCCChhcccCCceeEEecC-CCceEEEc-C-----------CCCceeEeceecCCCCChHHHHHhhc
Q 000113 158 WKDHNVQVLIRIRPLSNIEKVSQGYVRCLKQD-TAQTLVWL-G-----------HPETRFTFDHIACEMISQEKLFRVAG 224 (2159)
Q Consensus 158 ~~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~-s~~tiv~~-g-----------~p~~~FtFD~VFde~aSQEeVFe~v~ 224 (2159)
...+||+|+|||||+...+. . ++..+ ...++.+. . .....|+||+||+ +++|++||+.++
T Consensus 20 ~~~g~IrV~vRvRP~~~~~~---~---~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~ 92 (358)
T 2nr8_A 20 GTRKKVHAFVRVKPTDDFAH---E---MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVA 92 (358)
T ss_dssp ---CCEEEEEEECCCSSCCT---T---TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHT
T ss_pred CCCCCeEEEEEcCCCCCCcc---c---eeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHH
Confidence 35889999999999865321 1 22222 22222221 1 1124699999995 889999999999
Q ss_pred hhHHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeee
Q 000113 225 LPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLE 304 (2159)
Q Consensus 225 ~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflE 304 (2159)
.|+|+++|+|||+||||||||||||||||+|+... ...+|||||++++||..+.. .....|.|+|||+|
T Consensus 93 ~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~-----~~~~Giipra~~~lF~~i~~------~~~~~~~v~vS~~E 161 (358)
T 2nr8_A 93 KDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATEN-----YKHRGILPRALQQVFRMIEE------RPTHAITVRVSYLE 161 (358)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSC-----GGGBCHHHHHHHHHHHHHHT------CTTSCEEEEEEEEE
T ss_pred HHHHHHHhCCCceEEEEECCCCCCCceEecccccc-----cccCCcHHHHHHHHHHHHhh------cCCceEEEEEEEEE
Confidence 99999999999999999999999999999997432 23589999999999999853 23467999999999
Q ss_pred eecccccccCCCC------CCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEE
Q 000113 305 IYNEQITDLLEPS------STNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTC 378 (2159)
Q Consensus 305 IYNEkI~DLL~p~------s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI 378 (2159)
||||+|||||++. ..++.+++++ .|+||.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|
T Consensus 162 IYnE~i~DLL~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i 240 (358)
T 2nr8_A 162 IYNESLFDLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTI 240 (358)
T ss_dssp EETTEEEETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred EeCCeeeECcCCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEE
Confidence 9999999999863 3578999998 78999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhH
Q 000113 379 IIESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTF 458 (2159)
Q Consensus 379 ~Ie~~~~~~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTr 458 (2159)
.|.+............|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.||++ ++..|||||||||||
T Consensus 241 ~v~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~---~~~~hiPyRdSkLT~ 317 (358)
T 2nr8_A 241 YLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGD---QKRDHIPFRQCKLTH 317 (358)
T ss_dssp EEEEC-------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC--------CCGGGSHHHH
T ss_pred EEEEEeccCCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHh---CCCCcCCCccCHHHH
Confidence 99876544344445679999999999999999999999999999999999999999999975 345799999999999
Q ss_pred HhhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhcc
Q 000113 459 LLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLI 499 (2159)
Q Consensus 459 LLQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~I 499 (2159)
||||||||||+|+|||||||+..+++||++||+||+|||.|
T Consensus 318 LLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 318 ALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp HTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999986
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-83 Score=767.24 Aligned_cols=328 Identities=37% Similarity=0.551 Sum_probs=270.2
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEe-cCCC---ceEEEc--CC--CCceeEeceecCCCCChHHHHHhhchhHHHH
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLK-QDTA---QTLVWL--GH--PETRFTFDHIACEMISQEKLFRVAGLPMVEN 230 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~-~~s~---~tiv~~--g~--p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~ 230 (2159)
..+||+|+|||||+.+.+........++. .+.. ..+... .. ....|+||+||+|+++|++||+.++ |+|++
T Consensus 57 lkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~-~lv~~ 135 (403)
T 4etp_A 57 LRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQS 135 (403)
T ss_dssp HHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHHH-HHHHH
T ss_pred cCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHHH-HHHHH
Confidence 36899999999999876322222222222 2211 122211 11 1356999999999999999999865 99999
Q ss_pred hhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccc
Q 000113 231 CLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQI 310 (2159)
Q Consensus 231 vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI 310 (2159)
+|+|||+||||||||||||||||+|+ ++|||||++++||..|... ....+.|.|+|||+|||||+|
T Consensus 136 ~l~G~N~tifAYGqTGSGKTyTM~g~----------~~Giipr~~~~lF~~i~~~----~~~~~~~~v~vS~~EIYnE~i 201 (403)
T 4etp_A 136 SLDGYNVAIFAYGQTGSGKTFTMLNP----------GDGIIPSTISHIFNWINKL----KTKGWDYKVNAEFIEIYNENI 201 (403)
T ss_dssp HHTTCCEEEEEESCTTSSHHHHHHCT----------TTSHHHHHHHHHHHHHHHH----HTTTEEEEEEEEEEEEETTEE
T ss_pred HhCCcceEEEEECCCCCCCceEeCCC----------CCccchhHHHHHHHHHHhh----hccCceEEEEEEEEEEeccee
Confidence 99999999999999999999999995 3599999999999998643 234689999999999999999
Q ss_pred cccCCCCC---------CCceeeecC-CCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEE
Q 000113 311 TDLLEPSS---------TNLQLREDL-KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCII 380 (2159)
Q Consensus 311 ~DLL~p~s---------~~L~IrED~-k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~I 380 (2159)
||||+|.. ..+.+++++ .++++|.|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|
T Consensus 202 ~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v 281 (403)
T 4etp_A 202 VDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 281 (403)
T ss_dssp EETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEE
T ss_pred eEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEE
Confidence 99998753 346677765 56799999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHh
Q 000113 381 ESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLL 460 (2159)
Q Consensus 381 e~~~~~~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLL 460 (2159)
.+.....+ ....|+|+|||||||||++++++.|.|++||.+||+||++||+||.||++.. ++..|||||||||||||
T Consensus 282 ~~~~~~~~--~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~~~~hiPyRdSkLT~LL 358 (403)
T 4etp_A 282 SGSNAKTG--AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPD-STKRHIPFRNSKLTYLL 358 (403)
T ss_dssp EEEETTTC--CEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSC-TTTSCCCGGGSHHHHHT
T ss_pred EEeecCCC--CeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCcCCcccchHHHHH
Confidence 87654333 2457999999999999999999999999999999999999999999998643 33469999999999999
Q ss_pred hhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccc
Q 000113 461 QDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAK 504 (2159)
Q Consensus 461 QDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~ 504 (2159)
||||||||+|+|||||||+..+++||++||+||+|++.|+..|.
T Consensus 359 qdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 359 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp GGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred HHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999999999999999999988764
No 26
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=8e-83 Score=764.14 Aligned_cols=325 Identities=39% Similarity=0.582 Sum_probs=262.8
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCCCceEEEcCC--------CCceeEeceecCCCCChHHHHHhhchhHHHH
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTAQTLVWLGH--------PETRFTFDHIACEMISQEKLFRVAGLPMVEN 230 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~~tiv~~g~--------p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~ 230 (2159)
..+||+|+|||||+.+.|..... .++...+..++.+... ....|+||+||+|+++|++||+. +.|+|++
T Consensus 57 l~gnIrV~vRvRP~~~~E~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~ 133 (412)
T 3u06_A 57 LRDNIRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQS 133 (412)
T ss_dssp HTCSEEEEEEECCCCGGGTTSCB--CEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHH
T ss_pred hCCCEEEEEEcCCCCchhccCcc--eEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHH
Confidence 36899999999999988753221 1222222333332211 13569999999999999999986 4699999
Q ss_pred hhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccc
Q 000113 231 CLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQI 310 (2159)
Q Consensus 231 vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI 310 (2159)
+|+|||+||||||||||||||||+|+ ++++|||||++.+||..|... ....+.|.|+|||+|||||+|
T Consensus 134 ~l~G~n~tifAYGqTGSGKTyTM~G~--------~~~~Giipr~~~~lF~~i~~~----~~~~~~~~v~vS~~EIYnE~i 201 (412)
T 3u06_A 134 ALDGYNICIFAYGQTGSGKTYTMDGV--------PESVGVIPRTVDLLFDSIRGY----RNLGWEYEIKATFLEIYNEVL 201 (412)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHHTEE--------TTEECHHHHHHHHHHHHHHHH----GGGTEEEEEEEEEEEEETTEE
T ss_pred HHCCCceEEEEecCCCCCCeeEecCC--------CCCCccHHHHHHHHHHhhhhh----cccCceEEEEEEEEEEeCCee
Confidence 99999999999999999999999997 456799999999999998643 234689999999999999999
Q ss_pred cccCCCCCCCceee--ecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCC
Q 000113 311 TDLLEPSSTNLQLR--EDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDS 388 (2159)
Q Consensus 311 ~DLL~p~s~~L~Ir--ED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~ 388 (2159)
||||++...++.++ +++++|+||.|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+......
T Consensus 202 ~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 281 (412)
T 3u06_A 202 YDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQ 281 (412)
T ss_dssp EETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTT
T ss_pred EEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCC
Confidence 99999877665554 6788999999999999999999999999999999999999999999999999999987654332
Q ss_pred ccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCc
Q 000113 389 MTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNS 468 (2159)
Q Consensus 389 ~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNS 468 (2159)
....|+|+|||||||||.+ .|.|++||++||+||++||+||.||++ +..|||||||||||||||||||||
T Consensus 282 --~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~----~~~hiPyRdSkLT~LLqdsLgGns 351 (412)
T 3u06_A 282 --EISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNS 351 (412)
T ss_dssp --EEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHHGGGTSTTC
T ss_pred --CEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhc----cCCCCCccccHHHHHHHHhcCCCc
Confidence 3567999999999999975 468999999999999999999999975 357999999999999999999999
Q ss_pred cEEEEEeeCCCCCCHHHHHHHHHHHHHhhcccc-ccccccC
Q 000113 469 KTTIIANVSPSMCSANETLSTLKFAQRAKLIQN-NAKVNEN 508 (2159)
Q Consensus 469 KT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN-~~~VNed 508 (2159)
+|+|||||||+..+++||++||+||+|++.|+. +++.|..
T Consensus 352 kt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~~ 392 (412)
T 3u06_A 352 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRY 392 (412)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC--------
T ss_pred eEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccccccccc
Confidence 999999999999999999999999999999984 4555543
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=8.8e-82 Score=740.70 Aligned_cols=317 Identities=34% Similarity=0.502 Sum_probs=246.1
Q ss_pred CCCceEEEEEeCCCCChhcccCCceeEEecCC---CceEEEcCCCCceeEeceecCCCCChHHHHHhhchhHHHHhhcCC
Q 000113 159 KDHNVQVLIRIRPLSNIEKVSQGYVRCLKQDT---AQTLVWLGHPETRFTFDHIACEMISQEKLFRVAGLPMVENCLSGY 235 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s---~~tiv~~g~p~~~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGy 235 (2159)
..++|+|+|||||+++.+.. +...++...+ ...++. ..+.|+||+||+++++|++||+.++.|+|+++|+||
T Consensus 20 ~~~~VrV~vRvRP~~~~e~~--~~~~~v~~~~~~~~~~~~~---~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~ 94 (344)
T 3dc4_A 20 KLSAVRIAVREAPYRQFLGR--REPSVVQFPPWSDGKSLIV---DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGF 94 (344)
T ss_dssp CCSEEEEEEEECCCC---------CCSEECCSSSCSSEEEE---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCccccc--CCceEEEecCCCCCceEEe---cCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCC
Confidence 46789999999999887632 2233444332 333332 235799999999999999999999999999999999
Q ss_pred CceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeecccccccCC
Q 000113 236 NSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQITDLLE 315 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEkI~DLL~ 315 (2159)
|+||||||||||||||||+|+.... ..++++|||||++++||.+|... .......|.|+|||+|||||+|+|||+
T Consensus 95 N~tifAYGQTGSGKTyTM~g~~~~~--~~~~~~GIipra~~~LF~~i~~~---~~~~~~~~~v~vS~~EIYnE~i~DLL~ 169 (344)
T 3dc4_A 95 QCTALAYGQTGTGKSYSMGMTPPGE--ILPEHLGILPRALGDIFERVTAR---QENNKDAIQVYASFIEIYNEKPFDLLG 169 (344)
T ss_dssp CEEEEEESSTTSSHHHHHTCSCGGG--SCGGGCCHHHHHHHHHHHHHHHS---SSSCSSCCEEEEEEEEEESSCEEETTS
T ss_pred ceEEEEecCCCCCCCeEEcCCCCCC--CCcccCCcHHHHHHHHHHHHHhh---hhccccceEEEEEEEEEeCCeeEEccC
Confidence 9999999999999999999874322 23567899999999999998532 223346799999999999999999998
Q ss_pred CCCCCceeeecCCCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeecCCCccceeEe
Q 000113 316 PSSTNLQLREDLKKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWEKDSMTHFRFA 395 (2159)
Q Consensus 316 p~s~~L~IrED~k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~~~~~t~~r~S 395 (2159)
+...... .+..+.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+. ...|
T Consensus 170 ~~~~~~~------~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~s 235 (344)
T 3dc4_A 170 STPHMPM------VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK--------THHS 235 (344)
T ss_dssp SCTTSBC------CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS--------SCEE
T ss_pred CCCCCcc------ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec--------CcEE
Confidence 8653221 1233568999999999999999999999999999999999999999999999652 2459
Q ss_pred EeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEe
Q 000113 396 RLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIAN 475 (2159)
Q Consensus 396 KL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~ 475 (2159)
+|+|||||||||++++++.|.|++||.+||+||++||+||.+|++. +.|||||||||||||||||||||+|+||||
T Consensus 236 kl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~----~~hiPyRdSkLT~lLqdsLgGnskt~mIa~ 311 (344)
T 3dc4_A 236 RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAG----HTVIPYRDSVLTTVLQASLTAQSYLTFLAC 311 (344)
T ss_dssp EEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTT----CSSCCGGGSHHHHHTTTTSSTTCEEEEEEE
T ss_pred EEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhcc----CCcCCccccHHHHHHHHHhCCCCEEEEEEE
Confidence 9999999999999999999999999999999999999999999753 469999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhhcccccc
Q 000113 476 VSPSMCSANETLSTLKFAQRAKLIQNNA 503 (2159)
Q Consensus 476 VSPs~~n~eETLSTLrFAqRAK~IkN~~ 503 (2159)
|||+..+++||++||+||+|||.....|
T Consensus 312 isP~~~~~~ETlsTL~fA~ra~~~~~~~ 339 (344)
T 3dc4_A 312 ISPHQCDLSETLSTLRFGTSAKAAALEH 339 (344)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred eCCchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999876544
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.1e-77 Score=760.96 Aligned_cols=322 Identities=39% Similarity=0.563 Sum_probs=249.3
Q ss_pred CCCceEEEEEeC----CCCChhcccCCceeEEec------CCCceEEEcCCC-----CceeEeceecCCCCChHHHHHhh
Q 000113 159 KDHNVQVLIRIR----PLSNIEKVSQGYVRCLKQ------DTAQTLVWLGHP-----ETRFTFDHIACEMISQEKLFRVA 223 (2159)
Q Consensus 159 ~d~nVrV~VRVR----Pls~~E~~s~g~~~cv~~------~s~~tiv~~g~p-----~~~FtFD~VFde~aSQEeVFe~v 223 (2159)
.-.+++|||||| |....+..+......+.. .....++...++ ..+|+||+||+++++|++||+.+
T Consensus 372 il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~ 451 (715)
T 4h1g_A 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEEL 451 (715)
T ss_dssp SSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGGT
T ss_pred HHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHHH
Confidence 357799999999 444444322222222221 122333332221 35799999999999999999876
Q ss_pred chhHHHHhhcCCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeee
Q 000113 224 GLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFL 303 (2159)
Q Consensus 224 ~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSfl 303 (2159)
.|+|+++|+||||||||||||||||||||+|+ ++|||||++++||.+|... ......|.|+|||+
T Consensus 452 -~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~----------~~Giipr~~~~lf~~~~~~----~~~~~~~~v~~s~~ 516 (715)
T 4h1g_A 452 -SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP----------TNGMIPLSLKKIFNDIEEL----KEKGWSYTVRGKFI 516 (715)
T ss_dssp -HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT----------TTSHHHHHHHHHHHHHHHH----GGGTEEEEEEEEEE
T ss_pred -HHHHHHHhCCceEEEEccCCCCCchhhccCCC----------CCCcHHHHHHHHHHHHHHh----hcCCceEEEEEEEE
Confidence 59999999999999999999999999999984 4699999999999998643 23467899999999
Q ss_pred eeecccccccCCCCC---CCceeeecC-CCCEEEeCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCceeEEEEE
Q 000113 304 EIYNEQITDLLEPSS---TNLQLREDL-KKGVYVENLTEYNVKTVNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCI 379 (2159)
Q Consensus 304 EIYNEkI~DLL~p~s---~~L~IrED~-k~Gv~VkgLTEv~VsS~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~ 379 (2159)
|||||+|||||+|.. ..+.++++. .++++|.||+++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+
T Consensus 517 Eiyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~ 596 (715)
T 4h1g_A 517 EIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIID 596 (715)
T ss_dssp EEETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEE
T ss_pred EEECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEE
Confidence 999999999998753 456777655 5569999999999999999999999999999999999999999999999999
Q ss_pred EEeeecCCCccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHH
Q 000113 380 IESHWEKDSMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFL 459 (2159)
Q Consensus 380 Ie~~~~~~~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrL 459 (2159)
|.+..... ...+.|+|+|||||||||++++++.|.|++|+++||+||++||+||.+|+. ++..||||||||||||
T Consensus 597 ~~~~~~~~--~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~---~~~~~vpyR~SkLT~l 671 (715)
T 4h1g_A 597 LQGYNSLT--KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNL---KDGSHVPYRNSKLTYL 671 (715)
T ss_dssp EEEEETTT--CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHH---CSCCCCCGGGCHHHHH
T ss_pred EEEEecCC--CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCcCCCccCHHHHH
Confidence 98765433 235679999999999999999999999999999999999999999999975 3457999999999999
Q ss_pred hhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q 000113 460 LQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQ 500 (2159)
Q Consensus 460 LQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~Ik 500 (2159)
|||||||||+|+|||||||+..+++||++||+||+|||.|+
T Consensus 672 L~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 672 LKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp TGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred HHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 99999999999999999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=8.1e-29 Score=247.09 Aligned_cols=88 Identities=55% Similarity=0.730 Sum_probs=82.7
Q ss_pred HHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccc
Q 000113 421 AANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQ 500 (2159)
Q Consensus 421 a~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~Ik 500 (2159)
|++||+||++||+||.+|++. +..|||||||||||||||+|||||+|+|||||||+..+++||++||+||+|||.|+
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~---~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~ 77 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEG---TKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIK 77 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHT---CCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCE
T ss_pred CCcchHHHHHHHHHHHHHHhc---CCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhcc
Confidence 468999999999999999863 45799999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccc
Q 000113 501 NNAKVNENASG 511 (2159)
Q Consensus 501 N~~~VNed~s~ 511 (2159)
|.|.+|++.+.
T Consensus 78 ~~~~~n~~~~~ 88 (100)
T 2kin_B 78 NTVSVNLELTA 88 (100)
T ss_dssp EEECCEEECCH
T ss_pred CcceeccCCCH
Confidence 99999987765
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=6.8e-28 Score=246.47 Aligned_cols=103 Identities=51% Similarity=0.705 Sum_probs=88.9
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccc
Q 000113 425 NKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLGGNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAK 504 (2159)
Q Consensus 425 NKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLGGNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~ 504 (2159)
|+||++||+||.+|++ ++..|||||||||||||+|+|||||+|+||+||||+..+++||++||+||+|||.|+|+|.
T Consensus 1 N~SL~~Lg~vi~aL~~---~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~ 77 (117)
T 3kin_B 1 NKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 77 (117)
T ss_dssp CCHHHHHHHHHHHHHH---SCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCHHHHHHHHHHHHh---CCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCce
Confidence 8999999999999986 3457999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccc------------HHHHHHHHHHHHHHHHHH
Q 000113 505 VNENASGD------------VTALQRQIQQLKDKLSSL 530 (2159)
Q Consensus 505 VNed~s~~------------v~~L~~eIq~LK~eL~~l 530 (2159)
+|.+.+.. +..|+..|+.|+.+|.+|
T Consensus 78 ~n~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 78 VNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99887653 234444555555555544
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.8e-24 Score=246.79 Aligned_cols=262 Identities=9% Similarity=0.124 Sum_probs=171.1
Q ss_pred CCCceEEEEEeCCCC-ChhcccCCceeE-EecCCCceEEEcCCCCceeEeceecCCCCChH--HHHHhhchhHHHHhhc-
Q 000113 159 KDHNVQVLIRIRPLS-NIEKVSQGYVRC-LKQDTAQTLVWLGHPETRFTFDHIACEMISQE--KLFRVAGLPMVENCLS- 233 (2159)
Q Consensus 159 ~d~nVrV~VRVRPls-~~E~~s~g~~~c-v~~~s~~tiv~~g~p~~~FtFD~VFde~aSQE--eVFe~v~~PLV~~vLe- 233 (2159)
..+||||+|||||.. + ..| +...+. .+.. +.....|.||+||+|.++|+ +||+.+ .++|+.||+
T Consensus 22 LKGnIRVFcrvrp~~~p--------~~~~v~y~~~-~I~v-~~~~k~f~FDRVf~p~s~Qe~~~vf~E~-~~~i~scLd~ 90 (298)
T 2o0a_A 22 QKGTMRCYAYVMEQNLP--------ENLLFDYENG-VITQ-GLSEHVYKFNRVIPHLKVSEDKFFTQEY-SVYHDMCLNQ 90 (298)
T ss_dssp HHTCCEEEEEECGGGSC--------TTEEEETTTT-EEEE-TTTCCEEECSEEEETTTSCHHHHHHHTT-HHHHHHHHHT
T ss_pred hhCceEEEEEeccccCC--------ccceeecCcc-ceee-cCCCceEEeeeEECccccccHHHHHHHH-HHHHHHHHhC
Confidence 368999999999954 3 112 223322 2332 33346799999999999999 999994 699999999
Q ss_pred CCCceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeee-cccccc
Q 000113 234 GYNSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIY-NEQITD 312 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIY-NEkI~D 312 (2159)
|||+||||||||||||| ||++..+|.....- ..+.|.+.+||+||| ||.++|
T Consensus 91 GyNvcIfSyGQTGsGKT---------------------~ral~q~f~~~~~~------~~~~Y~~tlq~veLy~Ne~~~D 143 (298)
T 2o0a_A 91 KKNFNLISLSTTPHGSL---------------------RESLIKFLAEKDTI------YQKQYVITLQFVFLSDDEFSQD 143 (298)
T ss_dssp TCCEEEEEECSSCCHHH---------------------HHHHHHHHHSTTSH------HHHHEEEEEEEEEEECC-CEEE
T ss_pred CCceEEEEECCCCCCcc---------------------HHHHHHHHHHhhhh------cccceEEEEEEEEEecCCchHH
Confidence 99999999999999999 89999999753110 117899999999999 999999
Q ss_pred cCC--CCCCCceeeecCCCCEEEeCcEEEEeCC-HHHHHHHHHhhhcccccccccCCCCCCCceeEEEEEEEeeec---C
Q 000113 313 LLE--PSSTNLQLREDLKKGVYVENLTEYNVKT-VNDVVKLLLQGAANRKMAATYMNSESSRSHSVLTCIIESHWE---K 386 (2159)
Q Consensus 313 LL~--p~s~~L~IrED~k~Gv~VkgLTEv~VsS-~eE~l~LL~~G~~nR~vAsT~mN~~SSRSHsIFTI~Ie~~~~---~ 386 (2159)
||. |.+..+.|+.+.+++++|.|++.+.|.+ ++|+..++.-|...+ .|. +.-.|..+.+..+.. +
T Consensus 144 LL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~~------~~~---~gi~i~k~~~~~~~~~~~~ 214 (298)
T 2o0a_A 144 MLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHPN------LPH---SGMGIIKVQFFPRDSKSDG 214 (298)
T ss_dssp TTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC----
T ss_pred hcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhcccccc------cCC---CCceEEEEEEecCcccccc
Confidence 995 3334678888899999999999999999 999988874333221 111 223444444433111 1
Q ss_pred C-CccceeEeEeEeeeccCCccccCCcChhhHHHHHHHhhhhhHHHHHHHHHHhhhcCCCCCCccCCcchhhHHhhhhcC
Q 000113 387 D-SMTHFRFARLNLVDLAGSERQKSSGAEGDRLKEAANINKSLSTLGLVIMSLVDSAQGKHRHVPYRDSRLTFLLQDSLG 465 (2159)
Q Consensus 387 ~-~~t~~r~SKL~LVDLAGSER~kkTgaeG~RLkEa~nINKSLsaLG~VI~ALae~a~~K~~HVPYRDSKLTrLLQDSLG 465 (2159)
+ .... --++|+.+.-.. +...|.+.+. .+ -+-.|+++-+|+.-|-
T Consensus 215 ~~~~~~---~d~yf~e~~~~~--------------------~~~~l~~~~~------~~-----~~~~spi~~il~~ll~ 260 (298)
T 2o0a_A 215 NNDPVP---VDFYFIELNNLK--------------------SIEQFDKSIF------KK-----ESCETPIALVLKKLIS 260 (298)
T ss_dssp ---CCC---EEEEEEEECSHH--------------------HHHHHHHHHH------TC------CCCSHHHHHHHHHHH
T ss_pred cCCCCc---eEEEEEEeCCHH--------------------HHHHHHhhcc------cc-----cccCCcHHHHHHHHHh
Confidence 1 1111 236666654211 1222333221 11 2346788888886663
Q ss_pred CCccEEEEEeeCCCCCCHHHHHHHHHHHHHhhccccccccc
Q 000113 466 GNSKTTIIANVSPSMCSANETLSTLKFAQRAKLIQNNAKVN 506 (2159)
Q Consensus 466 GNSKT~MIa~VSPs~~n~eETLSTLrFAqRAK~IkN~~~VN 506 (2159)
..|.++++++..+. +.-.-|..+++...++|..+.|
T Consensus 261 -~tks~~~~~l~~~~----~~~~lL~~s~~i~~~~~~~~~~ 296 (298)
T 2o0a_A 261 -DTKSFFLLNLNDSK----NVNKLLTISEEVQTQLCKRKKK 296 (298)
T ss_dssp -HSBCEEEEEECCGG----GHHHHHHHHHHHHHHTC-----
T ss_pred -cCcceEEEEecCCC----chhHHHHHHHHhhcccCccccc
Confidence 57889999999753 3334788888888888765544
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.78 E-value=3.8e-05 Score=103.82 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.0
Q ss_pred hcCCCceeEeecccCCCcceee
Q 000113 232 LSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 232 LeGyN~TIFAYGQTGSGKTYTM 253 (2159)
-.|-|-||+..|-+|||||.|.
T Consensus 165 ~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 165 QDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HHTCCEEEECCCSTTSSTTHHH
T ss_pred hcCCCcEEEEecCCCCCccHHH
Confidence 3699999999999999999884
No 33
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.61 E-value=6.7e-05 Score=101.49 Aligned_cols=20 Identities=30% Similarity=0.202 Sum_probs=15.8
Q ss_pred ccccCCCCCCCceeEEEEEE
Q 000113 361 AATYMNSESSRSHSVLTCII 380 (2159)
Q Consensus 361 AsT~mN~~SSRSHsIFTI~I 380 (2159)
|.|..|..|||---.+.|++
T Consensus 236 AkT~rN~NSSRfgk~~~i~f 255 (1184)
T 1i84_S 236 AKTVKNDNSSRFGKFIRINF 255 (1184)
T ss_dssp EEETTEEEEECSCEEEEEEE
T ss_pred CcCCCCccccccceeEEEEE
Confidence 56889999999776766666
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.44 E-value=14 Score=42.53 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEE 1793 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~svee 1793 (2159)
...+...+..++..+..+..+...+..+|-.+..+...... ++ +.-....|..-|.+-++-
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~------------~l-------~~v~~~kE~~aL~kEie~ 101 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK------------KM-------SEIKSERELRSLNIEEDI 101 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH-------HHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH-------HccCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555444332 22 111244567778888888
Q ss_pred HHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHH
Q 000113 1794 LEHTVNALEKKVYEMNGEVERHHLIRDSLELEI 1826 (2159)
Q Consensus 1794 le~tin~LE~kV~~~k~e~~r~r~~r~~le~e~ 1826 (2159)
++.-+..||.++-++.+.++..+-.-+.++.++
T Consensus 102 ~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 102 AKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777777666544444443333
No 35
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.02 E-value=0.05 Score=57.45 Aligned_cols=50 Identities=20% Similarity=0.166 Sum_probs=35.8
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
++||...+....|..++..+ ..++.++--.-...++-||++||||||.+.
T Consensus 7 ~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 67888766666788888654 455555443334567889999999999874
No 36
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.91 E-value=0.063 Score=57.50 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=35.0
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCC-ceeEeecccCCCcceeec
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYN-SCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN-~TIFAYGQTGSGKTYTM~ 254 (2159)
.++||.+......+..++..+ ...+...-.++. ..|+-||++|+||||.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 467887666555677777743 345554433332 678999999999999864
No 37
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.95 E-value=0.088 Score=61.48 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=35.2
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.++||.+......+..++. .+...+...-.|....|+-||++|+||||.+.+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence 3677765544445666766 344556555444456788899999999999854
No 38
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.28 E-value=7.4 Score=44.69 Aligned_cols=69 Identities=7% Similarity=0.113 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 000113 1857 MSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVVLHSEAQASQYQQKYKTLEAMIREMQ 1925 (2159)
Q Consensus 1857 ~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~lh~eaqa~~y~~k~k~lEaM~~~~k 1925 (2159)
..+....-...+.++..+|..++..+++...++...++++.++.---++...+....-..|.+....+.
T Consensus 102 ~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~ 170 (256)
T 3na7_A 102 AKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLV 170 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666666666666777777776666665555555555555555555544333
No 39
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.03 E-value=41 Score=50.82 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=62.0
Q ss_pred hhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhh
Q 000113 1778 EQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQM 1857 (2159)
Q Consensus 1778 e~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~ 1857 (2159)
+-|.+++..+|...++.+...+..++++..+.+.+...+-.-+..-.|.++|+.++..+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~--------------------- 2068 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV--------------------- 2068 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 45667777777777776666666666666666666555444444445555555444332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhh
Q 000113 1858 SRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVV 1900 (2159)
Q Consensus 1858 ~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~ 1900 (2159)
..-|..|..=|..|.-|...=.+.+++++..+.-|+
T Consensus 2069 -------~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2069 -------KNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhcc
Confidence 233467778888888888888888888887776654
No 40
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.23 E-value=5.6 Score=54.25 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.5
Q ss_pred cCCCceeEeecccCCCcceee
Q 000113 233 SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.|-|-||+--|-+|||||.|.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 689999999999999999884
No 41
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.20 E-value=1.5 Score=54.26 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=54.0
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHH-HhhcC----CCceeEeecccCCCcceeecccccc---------ccCCCCCCC
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVE-NCLSG----YNSCMFAYGQTGSGKTYTMMGEINE---------VEGKLNDDC 268 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~-~vLeG----yN~TIFAYGQTGSGKTYTM~G~~~~---------~~g~~~e~~ 268 (2159)
.-+||.|.|-+.-=+++.+.+..|+.. ..+.+ +-..|+=||+.|+|||++.-.-... .......-.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYI 256 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCS
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhccc
Confidence 367899988876667778888888762 34432 2456888999999999765221000 011234456
Q ss_pred CChhHHHHHHHHHHH
Q 000113 269 GITPRIFEYLFSRIR 283 (2159)
Q Consensus 269 GIIPRale~LF~~I~ 283 (2159)
|--.+.++.+|....
T Consensus 257 Gese~~ir~lF~~A~ 271 (434)
T 4b4t_M 257 GEGAKLVRDAFALAK 271 (434)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 888899999998654
No 42
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.10 E-value=9.9 Score=57.04 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Q 000113 1595 TEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEE 1674 (2159)
Q Consensus 1595 ~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e 1674 (2159)
++++-..|...+.+|+.|+.+.+.++.+-..=-+. ++ +..+....+-+++...-+++-+.|.+++++|++
T Consensus 1936 V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~-ae---------~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~ 2005 (3245)
T 3vkg_A 1936 VKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQA-AE---------IKQKDARELQVQLDVRNKEIAVQKVKAYADLEK 2005 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445556666666666665554432211100 11 111111222233333444555566667777765
Q ss_pred ------HHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHH
Q 000113 1675 ------QKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDK 1748 (2159)
Q Consensus 1675 ------~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~k 1748 (2159)
+++-...+|.++..- -+.|..+......+.+.|+.+++++++.+.|+..|+.|+-....|
T Consensus 2006 A~Pa~Pkr~~l~~ae~~l~~~--------------~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2006 AEPTGPLREEVEQLENAANEL--------------KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp -----CHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555544322 123444555577888889999999999999999999999999999
Q ss_pred HHHHHHh----hhhhHHHH
Q 000113 1749 LAMAYAL----ADENEAIA 1763 (2159)
Q Consensus 1749 le~a~a~----a~e~eaia 1763 (2159)
|+.|..| +.|++--.
T Consensus 2072 l~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2072 VDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHH
Confidence 9999865 66665433
No 43
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.47 E-value=1.7 Score=53.55 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=52.1
Q ss_pred eEeceecCCCCChHHHHHhhchhHHH-Hhhc--C--CCceeEeecccCCCcceeecccccc---------ccCCCCCCCC
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVE-NCLS--G--YNSCMFAYGQTGSGKTYTMMGEINE---------VEGKLNDDCG 269 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~-~vLe--G--yN~TIFAYGQTGSGKTYTM~G~~~~---------~~g~~~e~~G 269 (2159)
-+||-|.|-+.-=+.+.+.+..|+.. ..+. | +.-.|+-||+.|+|||++.-.-... .......-.|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 57888888765556677777767653 3343 3 2345999999999999765221100 0112344568
Q ss_pred ChhHHHHHHHHHHH
Q 000113 270 ITPRIFEYLFSRIR 283 (2159)
Q Consensus 270 IIPRale~LF~~I~ 283 (2159)
-.++.++.+|....
T Consensus 249 e~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 249 EGPRMVRDVFRLAR 262 (428)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 88999999998753
No 44
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.16 E-value=0.37 Score=55.65 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=31.8
Q ss_pred eceecCCCCChHHHHHhhchhHHHHhhcCCC----ceeEeecccCCCcceee
Q 000113 206 FDHIACEMISQEKLFRVAGLPMVENCLSGYN----SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 206 FD~VFde~aSQEeVFe~v~~PLV~~vLeGyN----~TIFAYGQTGSGKTYTM 253 (2159)
||..|+...--..+.+.++..++.+.+...+ ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3444443333456667777777777765332 35788999999999875
No 45
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.02 E-value=0.44 Score=53.23 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=32.9
Q ss_pred eeEeceecCCCCChHHHHHhhchhHH-HHhh----cCCCceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMV-ENCL----SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV-~~vL----eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.++|+.+.+....-+.+.+.+. .+- ...+ ......|+-||++|+|||+..
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 4788999988877766665332 111 1111 123455899999999999986
No 46
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=83.52 E-value=11 Score=42.17 Aligned_cols=124 Identities=20% Similarity=0.243 Sum_probs=74.1
Q ss_pred HHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhh----HhhHHHHHHHHHHhhhhcccccccccc
Q 000113 1770 LEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLI----RDSLELEIQALRRRLSTVQNFSDIVDS 1845 (2159)
Q Consensus 1770 ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~----r~~le~e~~~~~~~~~~v~n~~~~~~~ 1845 (2159)
-++||-|-.+=|.|+.-+|...-.|...++-|...|...|.-....+-. -..|+.|+..+|..-.... -.+..-
T Consensus 37 qesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~--~~ireL 114 (189)
T 2v71_A 37 QEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH--KYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3567777777888888888888888888888888888877776665544 3456666665554222111 011222
Q ss_pred ccccCCCchhhhhhhHH-------HHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHhhhhhhh
Q 000113 1846 ENINAGHTEDQMSRKLQ-------DRLLQLQEAHHRIQLLEREKEEQN---EEIKRCKDYLSEVV 1900 (2159)
Q Consensus 1846 ~~~~~~~~~~~~~r~~~-------~~~~~l~~a~~~i~~l~~~~~~k~---~ei~q~k~~isel~ 1900 (2159)
++ ..|++.|..+ +-..-++.|.+++..|+.|+.+|+ .++..+|+-+++|.
T Consensus 115 Eq-----~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk 174 (189)
T 2v71_A 115 EQ-----ANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLR 174 (189)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------
T ss_pred HH-----HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3566666544 334467889999999999999877 35667777777664
No 47
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.29 E-value=11 Score=51.56 Aligned_cols=20 Identities=30% Similarity=0.137 Sum_probs=15.1
Q ss_pred ccccCCCCCCCceeEEEEEE
Q 000113 361 AATYMNSESSRSHSVLTCII 380 (2159)
Q Consensus 361 AsT~mN~~SSRSHsIFTI~I 380 (2159)
|.|..|..|||---.+.|.+
T Consensus 209 AkT~rN~NSSRFGK~i~i~F 228 (1080)
T 2dfs_A 209 AKTTRNDNSSRFGKYIEIGF 228 (1080)
T ss_dssp EEETTEEEEECSEEEEEEEE
T ss_pred CcCCCCCCccccceeEEEEE
Confidence 45888999999766666655
No 48
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.34 E-value=0.99 Score=55.79 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=37.0
Q ss_pred eEeceecCCCCChHHHHHhhchhHH-HHhhcCC----CceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMV-ENCLSGY----NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV-~~vLeGy----N~TIFAYGQTGSGKTYTM 253 (2159)
.+||.|.|-+.-=+++.+.+..|+. ...+.++ ...|+=||+.|+|||++.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 6789998877555677777777775 3444433 356999999999999874
No 49
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.79 E-value=3.7 Score=50.49 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=54.0
Q ss_pred eEeceecCCCCChHHHHHhhchhHH-HHhhcC----CCceeEeecccCCCcceeecccccc---------ccCCCCCCCC
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMV-ENCLSG----YNSCMFAYGQTGSGKTYTMMGEINE---------VEGKLNDDCG 269 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV-~~vLeG----yN~TIFAYGQTGSGKTYTM~G~~~~---------~~g~~~e~~G 269 (2159)
-+||.|.|-+.-=+++.+.+..|+. ...+.+ +...|+=||+.|+|||+..-.-... .......-.|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 5789998877666778888888875 344443 2356999999999999765211000 0112334568
Q ss_pred ChhHHHHHHHHHHH
Q 000113 270 ITPRIFEYLFSRIR 283 (2159)
Q Consensus 270 IIPRale~LF~~I~ 283 (2159)
--++.++.+|....
T Consensus 225 ese~~vr~lF~~Ar 238 (405)
T 4b4t_J 225 EGSRMVRELFVMAR 238 (405)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 88999999998753
No 50
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.77 E-value=3.9 Score=50.71 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=51.8
Q ss_pred eEeceecCCCCChHHHHHhhchhHH-HHhhc--C--CCceeEeecccCCCcceeecccccc---------ccCCCCCCCC
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMV-ENCLS--G--YNSCMFAYGQTGSGKTYTMMGEINE---------VEGKLNDDCG 269 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV-~~vLe--G--yN~TIFAYGQTGSGKTYTM~G~~~~---------~~g~~~e~~G 269 (2159)
-+||.|-|-+.-=+++.+.+..|+. ...+. | +-..|+=||+.|+|||++.-.-... .......-.|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCc
Confidence 5788888776555677777777764 23333 2 3467999999999999654111000 0112344568
Q ss_pred ChhHHHHHHHHHHH
Q 000113 270 ITPRIFEYLFSRIR 283 (2159)
Q Consensus 270 IIPRale~LF~~I~ 283 (2159)
--++.++.+|....
T Consensus 259 esek~ir~lF~~Ar 272 (437)
T 4b4t_I 259 DGPRLCRQIFKVAG 272 (437)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 88999999998753
No 51
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=80.22 E-value=0.75 Score=53.06 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=29.5
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.|+||.++.. .++...+.. +..++..-- +....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 5889876532 234444543 223333211 133568899999999999874
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=80.18 E-value=0.76 Score=49.36 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=28.6
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhc-CCCceeEeecccCCCcceeec
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLS-GYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLe-GyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.++|+.+++.. .+..++.. +..+.. +....|+-||++|+|||+.+.
T Consensus 24 ~~~~~~~~~~~-~~~~~~~~-----l~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 24 DETFTSYYPAA-GNDELIGA-----LKSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp TCSTTTSCC---CCHHHHHH-----HHHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CCChhhccCCC-CCHHHHHH-----HHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 36677666532 33444433 333333 356788999999999999863
No 53
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.89 E-value=0.6 Score=52.21 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=22.2
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.|+||.+.+.+..-..+.+. +..+. ..+..|+=||++|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~-----~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ-----VSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH-----HHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH-----HHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 37888887654333333322 22222 24567888999999999876
No 54
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.82 E-value=0.45 Score=54.94 Aligned_cols=46 Identities=26% Similarity=0.297 Sum_probs=28.8
Q ss_pred ceecCCCCChHHHHHhhchhHHHHhh-cCCCceeEeecccCCCcceee
Q 000113 207 DHIACEMISQEKLFRVAGLPMVENCL-SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 207 D~VFde~aSQEeVFe~v~~PLV~~vL-eGyN~TIFAYGQTGSGKTYTM 253 (2159)
+++++.-..++..+..+.. .+..++ .+...+|+-||++|+|||+++
T Consensus 15 ~~~p~~~~gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3333444456666555433 223333 345668999999999999986
No 55
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.66 E-value=0.69 Score=47.38 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=21.9
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.++..+..+....|+-||++|+|||+.+.
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 34444455667789999999999999873
No 56
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=79.30 E-value=0.51 Score=56.01 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=21.7
Q ss_pred HHHHhhcCCCceeEeecccCCCcceee
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+-..+-.|-..+|+-||++|+|||.|+
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 334444678889999999999999886
No 57
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=78.84 E-value=18 Score=36.53 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=63.5
Q ss_pred HhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhH
Q 000113 1743 CSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSL 1822 (2159)
Q Consensus 1743 ~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~l 1822 (2159)
..|+...+.|..-|++-|+-.-.+.+ -++++++||.-|-|-+.-||..+..++.++...+.-++--.-.+..-
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~-------~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a 84 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEE-------RSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444434333 35678999999999999999999999988888887777666677788
Q ss_pred HHHHHHHHHhhhhcc
Q 000113 1823 ELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1823 e~e~~~~~~~~~~v~ 1837 (2159)
|.+..+|-.+++.++
T Consensus 85 E~ev~~L~RriqllE 99 (101)
T 3u1c_A 85 ESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 889999988988776
No 58
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.71 E-value=0.55 Score=54.02 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=29.5
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.|+|+.+++. ..+... +...++.+..+.|+=||++|+|||+..
T Consensus 20 ~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 20 VFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 4889988764 334332 333344455566999999999999886
No 59
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.63 E-value=0.6 Score=52.47 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=32.5
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHH-----HhhcCCCceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVE-----NCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~-----~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.++|+.+.+....-+.+...+..|+.. ..--.....|+=||++|+|||+..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 478888887655445555544443221 111134556899999999999876
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=77.69 E-value=0.74 Score=47.32 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=22.1
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.++..+..+....|+-||++|+|||+.+.
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 34444455667789999999999999863
No 61
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.67 E-value=23 Score=35.69 Aligned_cols=88 Identities=25% Similarity=0.250 Sum_probs=62.8
Q ss_pred HhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhH
Q 000113 1743 CSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSL 1822 (2159)
Q Consensus 1743 ~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~l 1822 (2159)
..|+...+.|..-|+.-|+-.-.|.+ -++++++||.-|-|-+.-||..+...+..+...+..++-..-.+..-
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~~k~~e~-------~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A 84 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEADKKQAED-------RCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333 34568888988888888888888888888888887777777778888
Q ss_pred HHHHHHHHHhhhhcc
Q 000113 1823 ELEIQALRRRLSTVQ 1837 (2159)
Q Consensus 1823 e~e~~~~~~~~~~v~ 1837 (2159)
|.+..+|-.+|+.|+
T Consensus 85 E~evasLnRriqllE 99 (101)
T 3u59_A 85 EAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999886
No 62
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.18 E-value=0.44 Score=52.95 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=28.4
Q ss_pred eeEeceecCCCCChHHHHHhhchhHH-HHhhcCC----CceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMV-ENCLSGY----NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV-~~vLeGy----N~TIFAYGQTGSGKTYTM 253 (2159)
.++||.|.+....-..+-+. ...+- ..++.++ ...|+-||++|||||+.+
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 47888887764333333221 11110 1223222 233899999999999987
No 63
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=76.43 E-value=0.7 Score=53.30 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=33.0
Q ss_pred eEeceecCCCCChHHHHHhhchhHHH-Hhhc----CCCceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVE-NCLS----GYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~-~vLe----GyN~TIFAYGQTGSGKTYTM 253 (2159)
++|+.|.+....-+.+.+.+..|+.. ..+. .....|+=||++|+|||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 67888887665555666655555321 1121 23457899999999999876
No 64
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.41 E-value=30 Score=38.82 Aligned_cols=128 Identities=18% Similarity=0.205 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhh----chhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhh
Q 000113 1592 KDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLT----DTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSE 1667 (2159)
Q Consensus 1592 kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~----d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~ 1667 (2159)
|....+....+..++.|| ++.....+-||++|- .++..++..+.....|..|...+|..++...
T Consensus 16 k~~~~~~~q~~~~le~El-------~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~----- 83 (189)
T 2v71_A 16 KELSMKYKQSFQEARDEL-------VEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY----- 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 334444555555565554 556666666665553 3333333344444444444444444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhh---ccch----hhHHHHHHHHHHHHHHHHhhhhhhhHH
Q 000113 1668 AEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRI---VTSD----RDKLCEEVESVEEELRKVSKERDKLWV 1740 (2159)
Q Consensus 1668 ~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~v~~l~~~l~~~~~Erd~l~~ 1740 (2159)
.+....|..|++||..|... .+.....+|- .-|| .-...+++++++..|+.++-..--|+.
T Consensus 84 -----~e~~~~~~~Lq~el~~l~~~-------~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~ 151 (189)
T 2v71_A 84 -----AQSYKQVSVLEDDLSQTRAI-------KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLES 151 (189)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666666555544 2222222221 1122 123456777777788877766666666
Q ss_pred HHH
Q 000113 1741 EIC 1743 (2159)
Q Consensus 1741 e~~ 1743 (2159)
|+.
T Consensus 152 El~ 154 (189)
T 2v71_A 152 ELD 154 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=75.16 E-value=1 Score=48.77 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=18.6
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.| ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGTF 68 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 344567765 788999999999883
No 66
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=74.89 E-value=4.8 Score=38.92 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=41.3
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 000113 1850 AGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLS 1897 (2159)
Q Consensus 1850 ~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~is 1897 (2159)
+|+|-.++..-++.+..+|+.-...|+.|+.++.+||++|+.++.++-
T Consensus 17 ~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 17 GRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677899999999999999999999999999999999999887653
No 67
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=74.75 E-value=0.78 Score=51.97 Aligned_cols=51 Identities=24% Similarity=0.439 Sum_probs=33.2
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHH-HhhcC---CCceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVE-NCLSG---YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~-~vLeG---yN~TIFAYGQTGSGKTYTM 253 (2159)
..+|+.+.+....-..+.+.+..|+.. ..+.| ....|+=||++|+|||+..
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 367888887654445555555544431 22222 3567999999999999876
No 68
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=74.33 E-value=1.1 Score=47.77 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=18.3
Q ss_pred HHHhhcCCCceeEeecccCCCcceeec
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
+..++.|.| ++..++||||||.+..
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAYL 58 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHHH
Confidence 344566755 6788999999997654
No 69
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=74.20 E-value=31 Score=38.04 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=48.8
Q ss_pred HHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 000113 1624 EKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSE 1692 (2159)
Q Consensus 1624 ~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~ 1692 (2159)
-.||.+|.|....|...-+.-..+-+.+.|++..+..+-..-.++.+.+.---.-=..||.++..|-+.
T Consensus 9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888877777777778888887777777666666665555555555677777766655
No 70
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=73.27 E-value=1.2 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=17.7
Q ss_pred HHhhcCCCceeEeecccCCCcceee
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..++.|.| ++..++||||||.+.
T Consensus 33 ~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 33 PLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHcCCCC--EEEECCCCChHHHHH
Confidence 44567765 677889999999874
No 71
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.98 E-value=27 Score=35.16 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=75.4
Q ss_pred hhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhH
Q 000113 1703 IAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEE 1782 (2159)
Q Consensus 1703 ~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~kee 1782 (2159)
|-.-+..+..+-+...+-++.++.+++..-..+.++..||..|+.|+.....-.|..+.-+.+|....+...--+.+-|.
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555677778889999999999999999999999999999998888888888888888887777777777788
Q ss_pred HHHHHHHhHHHHH
Q 000113 1783 EVKILEHSIEELE 1795 (2159)
Q Consensus 1783 evk~le~sveele 1795 (2159)
||.-|-|-|--||
T Consensus 87 evasLnRriqllE 99 (101)
T 3u59_A 87 EVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 8888887766554
No 72
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=72.97 E-value=16 Score=38.66 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=66.1
Q ss_pred HhHHHHHHHHHHHHhhhcchhHHHhhhhhhhhhccCCCCchhhhHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 000113 1004 CTEWEKATLELTNFLADGSRSLRDASGQIESIVCLFPQFNVEVTENVGRAAKVCIEKDETILLLQKSLEEAQKMVVEMKE 1083 (2159)
Q Consensus 1004 ~~ewe~~t~el~~~L~dG~~sl~dAs~qi~~I~~SFP~~~~wIsEhV~~a~r~~iEKE~~I~~Lq~~LEdA~~m~~dme~ 1083 (2159)
+++|...+.|+..= |..++.||+-++.|+|-....-.+|+.++.+--.|-++.=.+|+..+++|.+....++.
T Consensus 52 ~~~f~~~~~ela~d-------li~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 52 PEEFSNTIDELSTD-------IILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46787777777644 77889999999999999999999999999999999999999999888888888887777
Q ss_pred HHhhh
Q 000113 1084 KCISL 1088 (2159)
Q Consensus 1084 kL~SL 1088 (2159)
.|+.+
T Consensus 125 ~l~~i 129 (132)
T 1ykh_B 125 MIEDF 129 (132)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66554
No 73
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=72.66 E-value=30 Score=35.90 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=58.6
Q ss_pred HHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCchhhhhhhH
Q 000113 1782 EEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKL 1861 (2159)
Q Consensus 1782 eevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~ 1861 (2159)
.++.-|-+-|..+-..=.-|+-+++++.+.|+-.|.--+ .|+ +.|+. |+ + +...+++.+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE---~E~-~~r~~---~E---------~-----di~~lrK~l 78 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ---EEM-LQREE---AE---------N-----TLQSFRQDV 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHH---HH---------H-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH-HHHHH---HH---------H-----HHHHhhhcc
Confidence 456667777777776666777777888887777665322 221 12211 11 1 233455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHhhhhh
Q 000113 1862 QDRLLQLQEAHHRIQLLEREKEEQ----NEEIKRCKDYLSE 1898 (2159)
Q Consensus 1862 ~~~~~~l~~a~~~i~~l~~~~~~k----~~ei~q~k~~ise 1898 (2159)
++--..--+...+|+.|..|+.-. ++||+++..+|++
T Consensus 79 D~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~qi~~ 119 (119)
T 3ol1_A 79 DNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQE 119 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666667777888888777643 5688888888764
No 74
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=72.64 E-value=1.5 Score=46.10 Aligned_cols=19 Identities=21% Similarity=0.653 Sum_probs=15.5
Q ss_pred ceeEeecccCCCcceeecc
Q 000113 237 SCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G 255 (2159)
..++-||++||||||.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp SEEEEESSSTTTTCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4567799999999999743
No 75
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=72.60 E-value=1.3 Score=54.21 Aligned_cols=48 Identities=25% Similarity=0.472 Sum_probs=27.9
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.|+||...... ++...+..+ ..++.. .|....+|=||++|+||||.+.
T Consensus 101 ~~tfd~fv~g~-~n~~a~~~~-~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 101 DYTFENFVVGP-GNSFAYHAA-LEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TCSGGGCCCCT-TTHHHHHHH-HHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCChhhcCCCC-chHHHHHHH-HHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 48888755322 333344322 222222 1213468899999999999874
No 76
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=72.20 E-value=1.6 Score=50.62 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=26.3
Q ss_pred CChHHHHHhhchhHHHHhhcCCC-c--eeEeecccCCCcceee
Q 000113 214 ISQEKLFRVAGLPMVENCLSGYN-S--CMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 214 aSQEeVFe~v~~PLV~~vLeGyN-~--TIFAYGQTGSGKTYTM 253 (2159)
..++.....+. ..+..++.|.. . +++-||++|+|||+++
T Consensus 20 ~gr~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 34555555543 34555555543 4 6899999999999987
No 77
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=71.84 E-value=1.7 Score=48.95 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=18.3
Q ss_pred cCCCceeEeecccCCCcceee
Q 000113 233 SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.+....|+=||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999986
No 78
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=71.73 E-value=12 Score=40.57 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=67.8
Q ss_pred HhHHHHHHHHHHHHhhhcchhHHHhhhhhhhhhccCCCCchhhhHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 000113 1004 CTEWEKATLELTNFLADGSRSLRDASGQIESIVCLFPQFNVEVTENVGRAAKVCIEKDETILLLQKSLEEAQKMVVEMKE 1083 (2159)
Q Consensus 1004 ~~ewe~~t~el~~~L~dG~~sl~dAs~qi~~I~~SFP~~~~wIsEhV~~a~r~~iEKE~~I~~Lq~~LEdA~~m~~dme~ 1083 (2159)
+++|...+.|+..= |..++.||+-++.|+|-....-.+|+.++.+--.|-++.=.+|+..+++|.+....++.
T Consensus 52 ~~~f~~~~~ela~d-------li~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 52 PEEFSNTIDELSTD-------IILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46787777777544 77889999999999999999999999999999999999999999888888888888777
Q ss_pred HHhhhhHH
Q 000113 1084 KCISLKGA 1091 (2159)
Q Consensus 1084 kL~SLrgA 1091 (2159)
-|..+...
T Consensus 125 ~l~~ia~~ 132 (151)
T 1yke_B 125 LIEDFVDG 132 (151)
T ss_dssp HHHTTCCC
T ss_pred HHHHHHHH
Confidence 77665443
No 79
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=71.40 E-value=0.96 Score=49.96 Aligned_cols=24 Identities=42% Similarity=0.844 Sum_probs=18.7
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.| ++..|+||||||.+.
T Consensus 61 i~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 61 IIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 344567766 688999999999874
No 80
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=70.67 E-value=0.92 Score=53.68 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=31.6
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHh----hcCCCceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENC----LSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~v----LeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.+|+.+.+....-..+.+.+..|+...- +.+....|+-||++|+|||+..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 5678777654333444444444432211 2345667999999999999886
No 81
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.61 E-value=15 Score=43.90 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=73.6
Q ss_pred CCceEEEEEeCCCCChhcccCCceeEEecCCC-ceEEEcCCCCceeEeceecCCCC--ChHHHHHhhchhHHHHhh-cCC
Q 000113 160 DHNVQVLIRIRPLSNIEKVSQGYVRCLKQDTA-QTLVWLGHPETRFTFDHIACEMI--SQEKLFRVAGLPMVENCL-SGY 235 (2159)
Q Consensus 160 d~nVrV~VRVRPls~~E~~s~g~~~cv~~~s~-~tiv~~g~p~~~FtFD~VFde~a--SQEeVFe~v~~PLV~~vL-eGy 235 (2159)
++.||+|.-+-+-...+ -+.++-. .++. .+.....|.|++|++... .+.-+|+. ..+.++-|+ .|.
T Consensus 58 KG~IRcFAYi~~~~~p~--------~~~idY~~~~It-~~~~~~~y~FnRiIp~~~~~e~~~l~qE-~q~y~DmcL~~~~ 127 (333)
T 4etp_B 58 KGTMRVYAYVMEQNLPE--------NLLFDYENGVIT-QGLSEHVYKFNRVIPHLKVSEDCFFTQE-YSVYHDMALNQKK 127 (333)
T ss_dssp HTCCEEEEEECCSSCCS--------SCEEETTTTEEE-C--CCCEEECSEEEETTTCCHHHHHHHT-THHHHHHHHHTTC
T ss_pred cCcEEEEEEECcccCCc--------cEEEecccceEe-ecCCcceEEEeeeechhhcchHHHHHHH-HHHHHHHHHccCC
Confidence 56788888776621111 1122222 2332 233456799999998776 44455555 579999999 899
Q ss_pred CceeEeecccCCCcceeeccccccccCCCCCCCCChhHHHHHHHHHHHHHHhhhccccceEEEEEeeeeeeccc-ccccC
Q 000113 236 NSCMFAYGQTGSGKTYTMMGEINEVEGKLNDDCGITPRIFEYLFSRIRMEEENRRDERLKFSCKCSFLEIYNEQ-ITDLL 314 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~G~~~~~~g~~~e~~GIIPRale~LF~~I~~eee~~~~~~~~fsVkvSflEIYNEk-I~DLL 314 (2159)
|+.||.-|+.- .+.....|+..+.. ...-..+.|.+.+-|+-+-++. ..|||
T Consensus 128 NfslIsis~~~------------------------w~~Lr~~lL~fi~~---k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL 180 (333)
T 4etp_B 128 NFNLISLSTTP------------------------HGSLRESLIKFLAE---KDTIYQKQYVITLQFVFLSDDEFSQDML 180 (333)
T ss_dssp CEEEEEEESSC------------------------CCHHHHHHHHHHHS---TTCHHHHHEEEEEEEEECCSSSCCEESS
T ss_pred CeeEEEecCCC------------------------cHHHHHHHHHHHHh---cccccccceEEEEEEEEEcCCCchhhhh
Confidence 99999988741 12333444444421 0000136788899998887776 68999
Q ss_pred CCC
Q 000113 315 EPS 317 (2159)
Q Consensus 315 ~p~ 317 (2159)
.+.
T Consensus 181 ~~~ 183 (333)
T 4etp_B 181 LDY 183 (333)
T ss_dssp CC-
T ss_pred ccc
Confidence 875
No 82
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=70.35 E-value=0.83 Score=51.76 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=27.8
Q ss_pred eeEeceecCCCCChHHHHHhhchhHH-HHhhcCC----CceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMV-ENCLSGY----NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV-~~vLeGy----N~TIFAYGQTGSGKTYTM 253 (2159)
.++||.|.+.......+.+.+ ..+- ..++.++ ...|+-||++|||||+.+
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~-~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHH-HHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHH-HHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 377888776643333332211 1110 1122222 223899999999999986
No 83
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=70.11 E-value=1.5 Score=48.21 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=18.8
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.| ++..++||||||.+.
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 344567866 688899999999874
No 84
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=70.05 E-value=36 Score=34.40 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=70.8
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 000113 1707 LRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKI 1786 (2159)
Q Consensus 1707 ~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~ 1786 (2159)
+..+.-+-+...+-++.++.+++..-..+.++..||.+|+-|+.....-.|--+.-..+|.+..+...--+.+-|.||.-
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~ 90 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456667777889999999999999999999999999999888777777777778888777777677777778888
Q ss_pred HHHhHHHHH
Q 000113 1787 LEHSIEELE 1795 (2159)
Q Consensus 1787 le~sveele 1795 (2159)
|-|-|.-||
T Consensus 91 L~RriqllE 99 (101)
T 3u1c_A 91 LNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 877776655
No 85
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=68.94 E-value=0.73 Score=50.85 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=16.8
Q ss_pred CCCceeEeecccCCCcceee
Q 000113 234 GYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM 253 (2159)
.....|+-||++|+|||+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34567999999999999986
No 86
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=68.56 E-value=1.9 Score=45.26 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=16.7
Q ss_pred cCCCceeEeecccCCCcceee
Q 000113 233 SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.|-...++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343445999999999999886
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=67.99 E-value=0.97 Score=48.06 Aligned_cols=35 Identities=29% Similarity=0.191 Sum_probs=23.5
Q ss_pred CCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 211 CEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 211 de~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.+..-|.+++. .++.|.| ++.+|+||||||++..-
T Consensus 33 ~l~~~Q~~~i~--------~~~~~~~--~li~~~tGsGKT~~~~~ 67 (216)
T 3b6e_A 33 QLRPYQMEVAQ--------PALEGKN--IIICLPTGSGKTRVAVY 67 (216)
T ss_dssp CCCHHHHHHHH--------HHHTTCC--EEEECSCHHHHHHHHHH
T ss_pred CchHHHHHHHH--------HHhcCCC--EEEEcCCCCCHHHHHHH
Confidence 44445666554 3455654 67789999999998643
No 88
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=67.84 E-value=1.8 Score=50.04 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=20.3
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|-+..++++++||||||.+.
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCCccHHH
Confidence 45567775566899999999999874
No 89
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=67.58 E-value=2.1 Score=49.86 Aligned_cols=47 Identities=28% Similarity=0.231 Sum_probs=31.8
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCCc--eeEeecccCCCcceeec
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYNS--CMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~--TIFAYGQTGSGKTYTM~ 254 (2159)
.++||.+.+ |+.+...+ ..++..+-.|... .|+=||++|+|||+...
T Consensus 40 ~~~~~~ivG----~~~~~~~l-~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAA-GVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEES----CHHHHHHH-HHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccC----hHHHHHHH-HHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 466777765 44444332 2455555566654 78999999999999874
No 90
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=67.57 E-value=1.9 Score=47.25 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=17.6
Q ss_pred HHhhcCCCceeEeecccCCCcceee
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..++.|.| ++..++||||||.+.
T Consensus 57 ~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 57 GLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHhCCCC--EEEEeCCCCcHHHHH
Confidence 44567766 677789999999874
No 91
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=67.52 E-value=1.3 Score=51.92 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=33.2
Q ss_pred eEeceecCCCCChHHHHHhhchhHH-HHhhcCC---CceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMV-ENCLSGY---NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV-~~vLeGy---N~TIFAYGQTGSGKTYTM 253 (2159)
.+|+.|.+....-+.+.+.+..|+- ..++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 5678888765444555555555543 2344442 246889999999999886
No 92
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.89 E-value=3 Score=52.11 Aligned_cols=80 Identities=24% Similarity=0.327 Sum_probs=52.4
Q ss_pred eEeceecCCCCChHHHHHhhchhHHH-HhhcCC----CceeEeecccCCCcceeecccccc---------ccCCCCCCCC
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVE-NCLSGY----NSCMFAYGQTGSGKTYTMMGEINE---------VEGKLNDDCG 269 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~-~vLeGy----N~TIFAYGQTGSGKTYTM~G~~~~---------~~g~~~e~~G 269 (2159)
.+||-|.|-+.-=+++.+.+..|+.. ..+.++ --.|+-||+.|+|||++.-.-... .......-.|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 67899988775556777777777652 344433 456999999999999754211000 0112344568
Q ss_pred ChhHHHHHHHHHHH
Q 000113 270 ITPRIFEYLFSRIR 283 (2159)
Q Consensus 270 IIPRale~LF~~I~ 283 (2159)
--.+.++.+|....
T Consensus 286 esek~ir~lF~~Ar 299 (467)
T 4b4t_H 286 EGARMVRELFEMAR 299 (467)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88899999998753
No 93
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=66.43 E-value=1.8 Score=46.70 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=19.0
Q ss_pred HHHhhcCCCceeEeecccCCCcceeecc
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
+..+++|.| ++..++||||||.+..-
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~~~ 70 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVFVL 70 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhhhH
Confidence 345567766 67778999999987643
No 94
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=66.18 E-value=1.7 Score=50.12 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=16.9
Q ss_pred CCCceeEeecccCCCcceee
Q 000113 234 GYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM 253 (2159)
+...+|+-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44568999999999999886
No 95
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=66.10 E-value=1.7 Score=49.40 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=16.6
Q ss_pred CCCceeEeecccCCCcceee
Q 000113 234 GYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM 253 (2159)
.....|+=||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34457999999999999986
No 96
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=65.84 E-value=1.8 Score=48.91 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=18.3
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.| ++..|+||||||.+.
T Consensus 85 i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 85 IRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHhCCCc--EEEEccCCCCchHHH
Confidence 344566765 788999999999874
No 97
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.56 E-value=2.1 Score=49.79 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=26.9
Q ss_pred CCChHHHHHhhchhHHHHhhcC-CCceeEeecccCCCcceee
Q 000113 213 MISQEKLFRVAGLPMVENCLSG-YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 213 ~aSQEeVFe~v~~PLV~~vLeG-yN~TIFAYGQTGSGKTYTM 253 (2159)
-..++...+.+.. .+..++.| ...+|+-||++|+|||+++
T Consensus 22 l~gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 22 IPFREDILRDAAI-AIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CTTCHHHHHHHHH-HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CCChHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3445556555543 44555444 4558999999999999886
No 98
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=64.65 E-value=1.2 Score=49.67 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=28.1
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHH-Hhhc----CCCceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVE-NCLS----GYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~-~vLe----GyN~TIFAYGQTGSGKTYTM 253 (2159)
.++|+.+.+.+..-+.+...+ ..+.. ..+. .....|+-||++|||||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 367888876543333333221 11110 0111 23456899999999999876
No 99
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=63.99 E-value=2.4 Score=46.96 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=17.5
Q ss_pred HHhhcCCCceeEeecccCCCcceee
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..++.|.| ++..++||||||.+.
T Consensus 55 ~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 55 PAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHH
Confidence 44567766 677789999999874
No 100
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=63.69 E-value=2.3 Score=46.29 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=17.5
Q ss_pred HHhhcCCCceeEeecccCCCcceee
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..++.|.| ++..++||||||.+.
T Consensus 52 ~~~~~~~~--~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 52 PIILQGID--LIVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHH
Confidence 44567765 477899999999874
No 101
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.60 E-value=2.6 Score=49.16 Aligned_cols=42 Identities=26% Similarity=0.416 Sum_probs=25.9
Q ss_pred EeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 205 TFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 205 tFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.|+.+++ |+.+.+. +-..+-.|--..++=||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~----L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITT----VRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHH----HHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3566664 5555443 2233334533337779999999999973
No 102
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.33 E-value=2.2 Score=48.99 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=18.8
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
...+..|-...++-||++|+|||+++
T Consensus 50 ~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 50 KKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 33344554345888999999999886
No 103
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=63.22 E-value=90 Score=32.66 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMA 1752 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a 1752 (2159)
..-+.+-++..++....++.++..|+.++-.|+..++-.
T Consensus 85 l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 85 VKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555577777888888888999999998888887753
No 104
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=62.69 E-value=2.4 Score=46.80 Aligned_cols=23 Identities=48% Similarity=0.648 Sum_probs=17.3
Q ss_pred HHhhcCCCceeEeecccCCCcceee
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..++.|.| ++..++||||||.+.
T Consensus 61 ~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 61 PVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHhCCCC--EEEECCCcCHHHHHH
Confidence 44567765 567789999999884
No 105
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.18 E-value=2.8 Score=48.90 Aligned_cols=24 Identities=42% Similarity=0.843 Sum_probs=19.0
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.+ ++..++||||||.+.
T Consensus 71 i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 71 ILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred hHHHhCCCC--EEEECCCCCcccHHH
Confidence 355567877 688999999999874
No 106
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=62.16 E-value=2.5 Score=51.79 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=22.4
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
+++..++..-.+.|.-.|+||||||.|+-
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 34555555556788999999999999973
No 107
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=61.67 E-value=3.3 Score=50.71 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=31.9
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHHHhhcCCC--ceeEeecccCCCcceeec
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVENCLSGYN--SCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN--~TIFAYGQTGSGKTYTM~ 254 (2159)
.|.|+.|. .|+.+...+. .++..+..|.. ..|+=||++|+|||+...
T Consensus 33 ~~~~~~ii----G~~~~~~~l~-~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 33 KQAASGLV----GQENAREACG-VIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CSEETTEE----SCHHHHHHHH-HHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred hhchhhcc----CHHHHHHHHH-HHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 46677776 4566655443 45666666653 367889999999998763
No 108
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=61.35 E-value=2.9 Score=45.85 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=17.0
Q ss_pred HhhcCCCceeEeecccCCCcceee
Q 000113 230 NCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 230 ~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.++.|.| ++..++||||||.+.
T Consensus 57 ~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 57 LGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHhCCCC--EEEECCCCCcHHHHH
Confidence 4567766 567889999999873
No 109
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=61.26 E-value=1.4 Score=50.56 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=29.7
Q ss_pred eEeceecCCCCChHHHHHhhchhHH-HHhhcCCC----ceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMV-ENCLSGYN----SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV-~~vLeGyN----~TIFAYGQTGSGKTYTM 253 (2159)
.+|+.|-+.+.--+.+.+.+..|+- ..++.+++ ..|+-||+.|||||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 6778777765555566666666653 23444433 23889999999999875
No 110
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=61.25 E-value=2.9 Score=50.72 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=20.7
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.+..++..|+||||||.+.
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp HHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred HHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 34456676778999999999999873
No 111
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=60.70 E-value=2.6 Score=46.60 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=17.2
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..+..|- .++..|+||||||..+
T Consensus 70 i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 70 LEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 34445554 5688999999999754
No 112
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=60.63 E-value=3 Score=48.51 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=20.6
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.+..++..++||||||.+.
T Consensus 56 i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 56 LPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHhcCCCCeEEEECCCCchHHHHH
Confidence 45556776667889999999999874
No 113
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=60.60 E-value=2.2 Score=49.58 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=31.7
Q ss_pred eEeceecCCCCChHHHHHhhchhHHH-HhhcCC---CceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVE-NCLSGY---NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~-~vLeGy---N~TIFAYGQTGSGKTYTM 253 (2159)
.+|+.|.+...--+.+.+.+..|+.. ..+.|. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 56888877554444555555444432 222332 346899999999999876
No 114
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=60.57 E-value=2.8 Score=48.33 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=20.3
Q ss_pred HHHhhcCCCceeEeecccCCCcceeec
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
+..++.|-...++..++||||||.+..
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 345567754668889999999998753
No 115
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=60.32 E-value=44 Score=34.71 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhHHHHHHH
Q 000113 2053 EQIILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISELDDMVKML 2129 (2159)
Q Consensus 2053 e~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd~~vk~L 2129 (2159)
+.+|..||+||+.+.-+|-.+..+++.-+..+-.-+...|.-.-.-+-+.++..-||.+.+..----++|+..|..|
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 46888999999999999998888888766655555555544333334444455556665554433334444444444
No 116
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.15 E-value=2.1 Score=46.41 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=17.4
Q ss_pred HHhhcCCCceeEeecccCCCcceee
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..+++|.| ++..++||||||.+.
T Consensus 36 ~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 36 PGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHH
Confidence 44556765 567889999999874
No 117
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=59.64 E-value=14 Score=36.12 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=45.4
Q ss_pred HHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccc
Q 000113 1787 LEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQN 1838 (2159)
Q Consensus 1787 le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n 1838 (2159)
||.-+++||..+--+|.-|..|+..|-+|+..=+.|...++.|.+++..++.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6788999999999999999999999999999999999999999999988874
No 118
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=59.46 E-value=2.8 Score=50.31 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=21.4
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeec
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.+.+++.--.+.|.-.|+||||||.|+-
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 4455555556688899999999999983
No 119
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=59.38 E-value=3.2 Score=46.45 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=17.3
Q ss_pred HHhhcCCCceeEeecccCCCcceee
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..++.|.| ++..++||||||.+.
T Consensus 75 ~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 75 PLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHhCCCC--EEEEcCCCCCchhHh
Confidence 44567755 667789999999874
No 120
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=58.52 E-value=2.7 Score=49.88 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=31.7
Q ss_pred eEeceecCCCCChHHHHHhhchhHHH-HhhcCC---CceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVE-NCLSGY---NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~-~vLeGy---N~TIFAYGQTGSGKTYTM 253 (2159)
.+|+.|.+....-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 56888877654445555555544321 233332 245888999999999876
No 121
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=58.50 E-value=2.2 Score=50.80 Aligned_cols=51 Identities=24% Similarity=0.426 Sum_probs=31.1
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHH-Hhhc---CCCceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVE-NCLS---GYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~-~vLe---GyN~TIFAYGQTGSGKTYTM 253 (2159)
.++||.+.+...--+.+...+..|+.. .++. .-..+|+=||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 367888887544334444444433331 1112 22457999999999999876
No 122
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=57.18 E-value=3.3 Score=48.59 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=18.4
Q ss_pred HHhhcCCCceeEeecccCCCcceeec
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
..++.|.| ++..++||||||.+..
T Consensus 69 ~~i~~~~~--~lv~a~TGsGKT~~~~ 92 (410)
T 2j0s_A 69 KQIIKGRD--VIAQSQSGTGKTATFS 92 (410)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHHH
T ss_pred HHHhCCCC--EEEECCCCCCchHHHH
Confidence 44567766 6788999999998754
No 123
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=56.13 E-value=2.5 Score=51.80 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=30.3
Q ss_pred eEeceecCCCCChHHHHHhhchhHHH-HhhcC---CCceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVE-NCLSG---YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~-~vLeG---yN~TIFAYGQTGSGKTYTM 253 (2159)
.+|+.|.+...--+.+.+.+..|+-. .++.| ....|+=||++|+|||+..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 67788876543333444444444321 23333 2356888999999999886
No 124
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=55.52 E-value=3.3 Score=46.36 Aligned_cols=42 Identities=31% Similarity=0.172 Sum_probs=27.2
Q ss_pred EeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccc
Q 000113 205 TFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 205 tFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~ 256 (2159)
.|..-|.+..-|.+.+. .++.|.+ ++.+|+||+|||++....
T Consensus 87 ~~~~~~~l~~~Q~~ai~--------~~~~~~~--~ll~~~tG~GKT~~a~~~ 128 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALE--------RWLVDKR--GCIVLPTGSGKTHVAMAA 128 (237)
T ss_dssp CCCCCCCCCHHHHHHHH--------HHTTTSE--EEEEESSSTTHHHHHHHH
T ss_pred cccCCCCcCHHHHHHHH--------HHHhCCC--EEEEeCCCCCHHHHHHHH
Confidence 33334555556666554 3455554 677889999999987543
No 125
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=55.48 E-value=5 Score=42.31 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.6
Q ss_pred ceeEeecccCCCcceeec
Q 000113 237 SCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~ 254 (2159)
..++-||++|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998863
No 126
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=54.71 E-value=3.6 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=18.0
Q ss_pred HHhhcCCCceeEeecccCCCcceeec
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
..++.|.+ ++..++||||||.+..
T Consensus 53 ~~i~~~~~--~li~a~TGsGKT~~~~ 76 (400)
T 1s2m_A 53 PVAITGRD--ILARAKNGTGKTAAFV 76 (400)
T ss_dssp HHHHHTCC--EEEECCTTSCHHHHHH
T ss_pred HHHhcCCC--EEEECCCCcHHHHHHH
Confidence 44556766 6778999999998653
No 127
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=54.42 E-value=3.2 Score=47.87 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=24.4
Q ss_pred CCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 211 CEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 211 de~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
+.-..|+++...+. ..+..| ..|+-||++|+|||+...
T Consensus 27 ~~i~g~~~~~~~l~----~~l~~~--~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 27 KVVVGQKYMINRLL----IGICTG--GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp TTCCSCHHHHHHHH----HHHHHT--CCEEEESCCCHHHHHHHH
T ss_pred cceeCcHHHHHHHH----HHHHcC--CeEEEECCCCCcHHHHHH
Confidence 33345666654443 333334 467889999999999863
No 128
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=54.34 E-value=4.1 Score=51.00 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=23.4
Q ss_pred CCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 212 EMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 212 e~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
+..-|...+.. ++..+..|.+.++++ ++||||||+++.
T Consensus 179 lr~~Q~~ai~~----~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 179 PRYYQQIAINR----AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp CCHHHHHHHHH----HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred chHHHHHHHHH----HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 33345444433 334445576655554 999999999964
No 129
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=54.02 E-value=4.1 Score=46.01 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=18.7
Q ss_pred HHhhcCCCceeEeecccCCCcceeeccc
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM~G~ 256 (2159)
..++.|.+ ++..++||||||.+..-+
T Consensus 26 ~~i~~~~~--~lv~~~TGsGKT~~~~~~ 51 (337)
T 2z0m_A 26 PLMLQGKN--VVVRAKTGSGKTAAYAIP 51 (337)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCcHHHHHHHH
Confidence 34556765 667789999999876543
No 130
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=54.00 E-value=1.9e+02 Score=31.98 Aligned_cols=105 Identities=19% Similarity=0.262 Sum_probs=64.5
Q ss_pred HHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhh
Q 000113 1625 KLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIA 1704 (2159)
Q Consensus 1625 ~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~ 1704 (2159)
.+|....|.-..+.........|-.+...|.+.|...-..++-..+...|---=|.+|+.|+-++...
T Consensus 45 ~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~------------ 112 (168)
T 3o0z_A 45 QLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN------------ 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 33333333334444444555566677777777777777777777666666555667777777666666
Q ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhH----HHHHhhHHHHH
Q 000113 1705 EDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLW----VEICSLNDKLA 1750 (2159)
Q Consensus 1705 ~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~----~e~~~l~~kle 1750 (2159)
+.++...-..+++.++.+-.|+..+. =++-.|..+++
T Consensus 113 ---------~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 113 ---------LEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 55666666666677777766766666 44555555554
No 131
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=53.70 E-value=4.3 Score=46.50 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=16.0
Q ss_pred CCceeEeecccCCCcceee
Q 000113 235 YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYTM 253 (2159)
-...|.-.|+||||||.++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 4456788999999999987
No 132
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=53.21 E-value=4.2 Score=41.87 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=17.0
Q ss_pred CCCceeEeecccCCCcceee
Q 000113 234 GYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM 253 (2159)
..+..|+=||++|||||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 56677999999999999875
No 133
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=53.12 E-value=5.2 Score=49.29 Aligned_cols=39 Identities=31% Similarity=0.495 Sum_probs=27.4
Q ss_pred CChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 214 ISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 214 aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..|+.+... +.++...+-.|.-.+|+=||++|+|||+..
T Consensus 29 vGq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 29 IGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CSCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CCcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 356666532 245555555666678999999999999876
No 134
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=52.79 E-value=6.5 Score=44.43 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=23.5
Q ss_pred ChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 215 SQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 215 SQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.|+.+...+. ..+-.|....++-||++|+|||++..
T Consensus 29 g~~~~~~~l~----~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 29 GQEHIVKRLK----HYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp SCHHHHHHHH----HHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHHHHHH----HHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 4566655432 22234544458899999999999863
No 135
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=52.63 E-value=4.3 Score=47.53 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=17.5
Q ss_pred HHhhcCCCceeEeecccCCCcceee
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..++.|.| ++..++||||||.+.
T Consensus 47 ~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 47 PIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHccCCC--EEEEcCCCCHHHHHH
Confidence 34567766 567889999999865
No 136
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=51.60 E-value=5.2 Score=49.47 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=20.4
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.+..++..|+||||||++.
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHH
Confidence 45566775567889999999999974
No 137
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=51.41 E-value=5.2 Score=45.00 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.7
Q ss_pred CceeEeecccCCCcceee
Q 000113 236 NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM 253 (2159)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999886
No 138
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=51.31 E-value=4.9 Score=50.15 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=31.9
Q ss_pred eEeceecCCCCChHHHHHhhchhHHH-Hhh----cCCCceeEeecccCCCcceee
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVE-NCL----SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~-~vL----eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.+|+.+.+....=+.+++.+..|+-. .++ .....+|+=||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 56777766554445566655544221 111 234567999999999999875
No 139
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=51.19 E-value=23 Score=35.52 Aligned_cols=60 Identities=10% Similarity=0.238 Sum_probs=40.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhh--cccchhhhhhhhhhhhhhhhccchhhHHHHHHHH-HHHHHHHHhhhhh
Q 000113 1664 KKSEAEEHLEEQKEVITGLEKEILHR--TSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVES-VEEELRKVSKERD 1736 (2159)
Q Consensus 1664 ~k~~~e~~L~e~~~vie~LE~eil~l--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~l~~~~~Erd 1736 (2159)
....++..|+|-.++|+.||.|+-++ .++.+.-+.+- ...--+.+.. ++.+|++++++||
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~k-------------lr~Yk~dl~~~lk~~lk~l~d~~d 97 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAK-------------LREWKKTIQSDIKRPLQSLVDSGD 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------------HHHHHHHHHHHTHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhhcCC
Confidence 34678899999999999999999999 66633222222 2222345556 6677777777776
No 140
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=51.03 E-value=6.7 Score=45.05 Aligned_cols=19 Identities=21% Similarity=0.259 Sum_probs=15.8
Q ss_pred CceeEeecccCCCcceeec
Q 000113 236 NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~ 254 (2159)
...+|-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 4567889999999999873
No 141
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=50.93 E-value=7.6 Score=44.77 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=27.8
Q ss_pred EeceecCCCCChHHHHHhhchhHHHHhh--cCCCceeEeecccCCCcceee
Q 000113 205 TFDHIACEMISQEKLFRVAGLPMVENCL--SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 205 tFD~VFde~aSQEeVFe~v~~PLV~~vL--eGyN~TIFAYGQTGSGKTYTM 253 (2159)
+|+.+. .+..+...+. ..+..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~ii----G~~~~~~~l~-~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYI----GQESIKKNLN-VFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCC----SCHHHHHHHH-HHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhC----ChHHHHHHHH-HHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 455554 4555554432 3444443 345567999999999999876
No 142
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=50.92 E-value=5.3 Score=46.78 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=19.5
Q ss_pred HHhhcC---CCceeEe--ecccCCCcceee
Q 000113 229 ENCLSG---YNSCMFA--YGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeG---yN~TIFA--YGQTGSGKTYTM 253 (2159)
..+..| -..+++- ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555556 4567888 999999999886
No 143
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.78 E-value=85 Score=38.47 Aligned_cols=93 Identities=11% Similarity=0.168 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhH----HHHHHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEE----EVKILEH 1789 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~kee----evk~le~ 1789 (2159)
+..+...|+.|++.|..++.--...+.=+..+.+.|..-++.|..||.+.-+--...|-+-+|-.+|-. .+++|+.
T Consensus 62 er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~ 141 (390)
T 1deq_A 62 DQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQK 141 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455667788888888888877777788888899999999999999999988766666666555554433 4566777
Q ss_pred hHHHHHhHHHHHHhHhh
Q 000113 1790 SIEELEHTVNALEKKVY 1806 (2159)
Q Consensus 1790 sveele~tin~LE~kV~ 1806 (2159)
-|+.+=..|--||..|+
T Consensus 142 ~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 142 NVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777776663
No 144
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=49.72 E-value=4.5 Score=41.59 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=16.7
Q ss_pred CCceeEeecccCCCcceeecc
Q 000113 235 YNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYTM~G 255 (2159)
.+..|+=||++|+|||+....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGG
T ss_pred CCCcEEEECCCCccHHHHHHH
Confidence 445688899999999987644
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=49.39 E-value=9.4 Score=43.45 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.8
Q ss_pred CCCceeEeecccCCCcceee
Q 000113 234 GYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM 253 (2159)
+....|+-||++|+|||+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 35567888999999999876
No 146
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=49.35 E-value=6.7 Score=45.76 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=23.6
Q ss_pred hHHHHhhcCCC---ceeEeecccCCCcceeec
Q 000113 226 PMVENCLSGYN---SCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 226 PLV~~vLeGyN---~TIFAYGQTGSGKTYTM~ 254 (2159)
..+..++.|.. .||+-||+.|+|||+...
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 45788888873 389999999999998763
No 147
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=49.17 E-value=4.8 Score=45.72 Aligned_cols=29 Identities=28% Similarity=0.592 Sum_probs=21.3
Q ss_pred HHHHhhcCC--CceeEeecccCCCcceeecc
Q 000113 227 MVENCLSGY--NSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 227 LV~~vLeGy--N~TIFAYGQTGSGKTYTM~G 255 (2159)
.+..++.|. ..+++-||+.|||||++...
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 345556663 24799999999999998644
No 148
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=48.47 E-value=2.6e+02 Score=29.23 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=19.9
Q ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHH
Q 000113 1705 EDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAM 1751 (2159)
Q Consensus 1705 ~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~ 1751 (2159)
++++-......++...++......+++......|..|...|...|+-
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~ 59 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQA 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444334333334444444444444455445444443
No 149
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=48.26 E-value=5.5 Score=45.37 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=17.8
Q ss_pred HHhhcCCCceeEeecccCCCcceeec
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
..++.|. ..++..|+||||||.+..
T Consensus 38 ~~~~~~~-~~~l~~~~TGsGKT~~~~ 62 (367)
T 1hv8_A 38 PLFLNDE-YNIVAQARTGSGKTASFA 62 (367)
T ss_dssp HHHHHTC-SEEEEECCSSSSHHHHHH
T ss_pred HHHhCCC-CCEEEECCCCChHHHHHH
Confidence 3445563 346788999999998854
No 150
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=47.68 E-value=5.1 Score=48.15 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=19.2
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+.++.-.-...|.-.|+||||||.|+
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 44433334567888999999999997
No 151
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=47.42 E-value=6.9 Score=46.35 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=18.0
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.| ++..++||||||.+.
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 344567764 678999999999854
No 152
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.28 E-value=66 Score=31.83 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhHHHHHHHh
Q 000113 2055 IILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISELDDMVKMLI 2130 (2159)
Q Consensus 2055 e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd~~vk~L~ 2130 (2159)
||..||.||+.+.-++-.+..|+|.=+.++---+...|.=.-+-+-+.++---||.+.+..----++||..|..|.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999988665555555555544444555556666677776665555566666655553
No 153
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=47.01 E-value=5.9 Score=45.84 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=18.4
Q ss_pred HHHhhcCCCceeEeecccCCCcceeec
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
+..++.|.| ++..++||||||.+..
T Consensus 39 i~~~~~~~~--~lv~a~TGsGKT~~~~ 63 (391)
T 1xti_A 39 IPQAILGMD--VLCQAKSGMGKTAVFV 63 (391)
T ss_dssp HHHHTTTCC--EEEECSSCSSHHHHHH
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHHH
Confidence 345566765 6677899999998763
No 154
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=46.66 E-value=9 Score=43.37 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=24.4
Q ss_pred ChHHHHHhhchhHHHHhhcCC------CceeEeecccCCCcceee
Q 000113 215 SQEKLFRVAGLPMVENCLSGY------NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 215 SQEeVFe~v~~PLV~~vLeGy------N~TIFAYGQTGSGKTYTM 253 (2159)
.|..+...+...+ .....|. .+.|+=||++|+|||++.
T Consensus 21 G~~~~~~~l~~~i-~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAI-RRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHH-HHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHH-HHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 5666665554333 3332221 357899999999999876
No 155
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=46.45 E-value=7 Score=48.32 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=19.6
Q ss_pred HHHhhcCCCceeEeecccCCCccee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYT 252 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYT 252 (2159)
+..++.|-+..+++.++||||||.+
T Consensus 103 i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 103 IKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHhcCCCCeEEEECCCCCCccHH
Confidence 4455666566789999999999987
No 156
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=45.92 E-value=8.4 Score=45.11 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.2
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
..++=||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34667999999999886
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=45.91 E-value=9.6 Score=44.10 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=23.7
Q ss_pred CChHHHHHhhchhHHHHhhcC-CCceeEeecccCCCcceeec
Q 000113 214 ISQEKLFRVAGLPMVENCLSG-YNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 214 aSQEeVFe~v~~PLV~~vLeG-yN~TIFAYGQTGSGKTYTM~ 254 (2159)
..|+.+...+.. .+-.| ....++-||++|+|||++..
T Consensus 19 vg~~~~~~~L~~----~l~~~~~~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 19 VGQEHVLTALAN----GLSLGRIHHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CSCHHHHHHHHH----HHHHTCCCSEEEEESCTTSSHHHHHH
T ss_pred cCcHHHHHHHHH----HHHhCCCCeEEEEECCCCCCHHHHHH
Confidence 456666554332 22234 34468899999999999873
No 158
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.80 E-value=42 Score=36.58 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhHHHH--------------HHhHHHHhhhhchhhHHHH--------hhhhhhHHhhh
Q 000113 1593 DETEKLFSTLSQVRQDLDRKASQLDNLL--------------LQHEKLEASLTDTENALVI--------AKGTIDTLSDQ 1650 (2159)
Q Consensus 1593 De~e~l~~~l~~~~~EL~~Kss~l~d~~--------------~~~~~LE~~L~d~~~al~~--------~~~~~~~ls~e 1650 (2159)
...+.+-..+.++..++..+..++..+. .....++.+|-|..++||- |+-.-..+-..
T Consensus 37 ~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r 116 (154)
T 2ocy_A 37 ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEIL 116 (154)
T ss_dssp HTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000113 1651 NADLRVLLKDLYLKKSEAEEHLEEQKEVITGLEKE 1685 (2159)
Q Consensus 1651 N~eLr~~l~~~~~~k~~~e~~L~e~~~vie~LE~e 1685 (2159)
|..|+..|.|.-......+++|.+-+.|+..++.+
T Consensus 117 ~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~~e 151 (154)
T 2ocy_A 117 NKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLDNE 151 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 159
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=45.66 E-value=4.8 Score=45.54 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=16.3
Q ss_pred hhcCCCceeEeecccCCCcceeecc
Q 000113 231 CLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 231 vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
++.|.++ +..|+||||||.+...
T Consensus 125 ~l~~~~~--ll~~~tGsGKT~~~~~ 147 (282)
T 1rif_A 125 GLVNRRR--ILNLPTSAGRSLIQAL 147 (282)
T ss_dssp HHHHSEE--EECCCTTSCHHHHHHH
T ss_pred HHhcCCe--EEEcCCCCCcHHHHHH
Confidence 4445444 3399999999998754
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=45.52 E-value=5.9 Score=44.65 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=16.8
Q ss_pred cCCCceeEeecccCCCcceee
Q 000113 233 SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.|....++-||++|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 354445899999999999886
No 161
>3p30_A HIV-1 GP41; HIV, GP41, cluster 2, 6-helix bundle, immune system; 3.30A {Human immunodeficiency virus 1}
Probab=45.46 E-value=32 Score=34.94 Aligned_cols=81 Identities=25% Similarity=0.332 Sum_probs=43.3
Q ss_pred hhhHHHHHhhhhhhhhhhHHhHhHHHHHHHHhhhcchhhhhhhhhhhhhcchhHHHHhhhcccccccchhhhhhhHHHHH
Q 000113 1958 CIASVVQQMNSEKDQELSAATLRIQKLEALAASRQKEVCMLNTRLAAAESMTHDVIRDLLGVKLDMTNYANLIDQEHVQK 2037 (2159)
Q Consensus 1958 CI~glvQQmn~EKDqEls~ArlRIeELE~laa~rQkEi~~LnarLAa~eSMTHDVIRdLLGVKldmTnyA~liD~~q~~k 2037 (2159)
..+|||||=|- |-.| ||-=..|....=-=|==|.||+-|+|-||. .+-.--+.||.+.| -.
T Consensus 11 ll~givqqq~n-----ll~a---ieaqq~ll~ltvwGikqlqarvlA~ermTW------~qWekeI~nyt~~I-----y~ 71 (96)
T 3p30_A 11 LLSGIVQQQSN-----LLRA---IEAQQHLLKLTVWGIKQLQARVLSGGRGGW------LQWDKEISNYTHII-----YE 71 (96)
T ss_dssp HHHHHHHHHHH-----HHHH---HHHHHHHHHHHHHHHHHHHHHC-------C------HHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHH-----HHHH---HHHHHHHHHHHHHHHhcccccccccccccH------HHHHHHHHHHHHHH-----HH
Confidence 36899999442 3222 444444444443445568899999999996 44445567777644 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000113 2038 LVVAAQQQTQELLAKEQIILNLR 2060 (2159)
Q Consensus 2038 l~e~a~~~~~e~~~ke~e~~~Lk 2060 (2159)
+++++|.|-+. .|+++..|-
T Consensus 72 lLe~sq~qQek---Nek~Ll~Ld 91 (96)
T 3p30_A 72 LIEESQKQQEK---NEQELLELD 91 (96)
T ss_dssp HHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHhhHHH---HHHHHHhhc
Confidence 77777776543 345666553
No 162
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=45.10 E-value=58 Score=34.75 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHh
Q 000113 2040 VAAQQQTQELLAKEQIILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRI 2119 (2159)
Q Consensus 2040 e~a~~~~~e~~~ke~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki 2119 (2159)
.+|-.-+.|.+....++..|++++.++ -.||..=+-++..+|+.++.+.+ +++-|+-++..|.+++
T Consensus 61 LaALNiadEl~k~~~~~~~L~~~l~~~-------~kE~~~lK~el~~~~~k~e~~~~-------e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 61 MMYLNIADDYFKAKKMADSLSLDIENK-------DKEIYDLKHELIAAQIKAESSAK-------EIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 334333444433334555555555554 55666666788888888887654 5566666666666666
Q ss_pred hhhHHHH
Q 000113 2120 SELDDMV 2126 (2159)
Q Consensus 2120 ~eLd~~v 2126 (2159)
.+|+.+.
T Consensus 127 ~~le~~~ 133 (138)
T 3hnw_A 127 VKLETEL 133 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665443
No 163
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=44.68 E-value=6.8 Score=47.31 Aligned_cols=23 Identities=43% Similarity=0.528 Sum_probs=17.7
Q ss_pred HHhhcCCCceeEeecccCCCcceee
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..++.|.| +++.++||||||.+.
T Consensus 88 ~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 88 PVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEECCCCCCchHHH
Confidence 34567765 688889999999864
No 164
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=44.17 E-value=5.2 Score=46.26 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=17.8
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 344566765 567899999999874
No 165
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=43.96 E-value=7.7 Score=47.15 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=19.1
Q ss_pred HHHhhcCCCceeEeecccCCCcceeecc
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
+..++.|.| ++..++||||||.+..-
T Consensus 16 i~~~~~~~~--~l~~~~tGsGKT~~~~~ 41 (556)
T 4a2p_A 16 AQPAINGKN--ALICAPTGSGKTFVSIL 41 (556)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCChHHHHHHH
Confidence 444567766 67788999999988543
No 166
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=43.68 E-value=7.3 Score=42.27 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=24.3
Q ss_pred hchhHHHHhhcC-C--CceeEeecccCCCcceeec
Q 000113 223 AGLPMVENCLSG-Y--NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 223 v~~PLV~~vLeG-y--N~TIFAYGQTGSGKTYTM~ 254 (2159)
++-|-++.++.| + ...+.-+|++|||||..+.
T Consensus 8 tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 8 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred CCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 345778888864 3 4567889999999998863
No 167
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=43.29 E-value=8 Score=48.62 Aligned_cols=20 Identities=35% Similarity=0.518 Sum_probs=16.2
Q ss_pred cCCCceeEeecccCCCcceeec
Q 000113 233 SGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.|.+ |.--|+||||||.||-
T Consensus 259 ~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHHH
Confidence 5655 6778999999999874
No 168
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.27 E-value=23 Score=31.17 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=25.9
Q ss_pred hhhhhhhhHHHHHHHHhHHHHHhHHHHHHh
Q 000113 1774 KLYAEQKEEEVKILEHSIEELEHTVNALEK 1803 (2159)
Q Consensus 1774 k~yae~keeevk~le~sveele~tin~LE~ 1803 (2159)
|+|-.+=|..||-||...-|||..|+-|++
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789888888899888888888888888875
No 169
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=42.60 E-value=7.5 Score=49.61 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=16.8
Q ss_pred CceeEeecccCCCcceeecc
Q 000113 236 NSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~G 255 (2159)
+..++..|++|||||||+-.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ 183 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAK 183 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHH
Confidence 46789999999999999743
No 170
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=42.53 E-value=6.1 Score=49.58 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=28.6
Q ss_pred ceeEeceecCCCCChHHHHHhhchhHH-HHhhcCC----CceeEeecccCCCcceee
Q 000113 202 TRFTFDHIACEMISQEKLFRVAGLPMV-ENCLSGY----NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 202 ~~FtFD~VFde~aSQEeVFe~v~~PLV-~~vLeGy----N~TIFAYGQTGSGKTYTM 253 (2159)
..++|+.|.+.+..-..+.+.+ ..+- ...+.++ ...|+-||++|||||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv-~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHH-HHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHH-HHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 3578888887543333332221 1110 0122222 234899999999999876
No 171
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=42.47 E-value=8.4 Score=46.63 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=18.3
Q ss_pred HHHhhcCCCceeEeecccCCCcceeec
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
+..++.|.| ++..++||||||.+..
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~~ 37 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVSL 37 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHHH
Confidence 344567765 5677899999998843
No 172
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=41.87 E-value=5.5 Score=49.72 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=28.0
Q ss_pred eeEeceecCCCCChHHHHHhhchhHH-HHhhcC----CCceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMV-ENCLSG----YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV-~~vLeG----yN~TIFAYGQTGSGKTYTM 253 (2159)
.++|+.|.+.+..-+++.+.+. .+- ...+.+ ....|+=||++|+|||+..
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 4778888775433333332211 100 011222 2345999999999999875
No 173
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=41.63 E-value=7.4e+02 Score=32.55 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHH
Q 000113 1722 ESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIA 1763 (2159)
Q Consensus 1722 ~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia 1763 (2159)
..|+..+..+...-++|...+-.=+.+|+.|..+..+.+-..
T Consensus 446 ~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~ 487 (863)
T 1sjj_A 446 PSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLY 487 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666677777776666555443
No 174
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.15 E-value=1.5e+02 Score=36.27 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=13.0
Q ss_pred hHHHHHhHHHHHHhHhhhhhhhHHhhh
Q 000113 1790 SIEELEHTVNALEKKVYEMNGEVERHH 1816 (2159)
Q Consensus 1790 sveele~tin~LE~kV~~~k~e~~r~r 1816 (2159)
-|+|||..|+-|+-+..+..-||+|+|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555544444444444443
No 175
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=41.07 E-value=15 Score=31.22 Aligned_cols=30 Identities=43% Similarity=0.511 Sum_probs=24.4
Q ss_pred HHHHHHHhHHHHHhHHHHHHhHhhhhhhhH
Q 000113 1783 EVKILEHSIEELEHTVNALEKKVYEMNGEV 1812 (2159)
Q Consensus 1783 evk~le~sveele~tin~LE~kV~~~k~e~ 1812 (2159)
.++-||--||||......||++|.-+++.+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 356799999999999999999887776543
No 176
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=40.87 E-value=8.4 Score=45.06 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=23.9
Q ss_pred cCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccc
Q 000113 210 ACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 210 Fde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~ 256 (2159)
|.+..-|.+.+ ..++.| .++..++||+|||.+..-.
T Consensus 8 ~~l~~~Q~~~i--------~~~~~~---~~ll~~~tG~GKT~~~~~~ 43 (494)
T 1wp9_A 8 IQPRIYQEVIY--------AKCKET---NCLIVLPTGLGKTLIAMMI 43 (494)
T ss_dssp HCCCHHHHHHH--------HHGGGS---CEEEECCTTSCHHHHHHHH
T ss_pred CCccHHHHHHH--------HHHhhC---CEEEEcCCCCCHHHHHHHH
Confidence 44444565554 445666 4566789999999987553
No 177
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.53 E-value=50 Score=31.77 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=36.6
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHh
Q 000113 1767 RQELEASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVER 1814 (2159)
Q Consensus 1767 ~q~ae~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r 1814 (2159)
-|--.|-.+|-+-|+.-++-||.-|.+||.+...|.+....|+..+.+
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788999999999999999999998877776655555555443
No 178
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.39 E-value=11 Score=42.61 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=16.4
Q ss_pred cCCCceeEeecccCCCcceee
Q 000113 233 SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.|.-..++-||++|+|||++.
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 444334888999999999876
No 179
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=40.37 E-value=8.9 Score=40.99 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=21.9
Q ss_pred chhHHHHhhc-CC--CceeEeecccCCCcceee
Q 000113 224 GLPMVENCLS-GY--NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 224 ~~PLV~~vLe-Gy--N~TIFAYGQTGSGKTYTM 253 (2159)
+-|-++.++. |+ ...+.-+|++|||||+.+
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 4466788776 44 234666899999999876
No 180
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=40.34 E-value=13 Score=48.12 Aligned_cols=46 Identities=30% Similarity=0.322 Sum_probs=32.3
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
|.|..+ .|.-.|..-+.. ++..+-.|.. ...-.|.|||||||||..
T Consensus 2 ~~~~~~-~~~~~q~~ai~~----l~~~~~~~~~-~~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAG----LVEALRDGER-FVTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHH----HHHHHHTTCS-EEEEEECTTSCHHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHH----HHHHHhcCCC-cEEEEcCCCcHHHHHHHH
Confidence 444443 888889877654 4555556643 245679999999999975
No 181
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=40.23 E-value=1.4e+02 Score=31.01 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=45.8
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHh---HHHHHHhHhhhhhhhHHhhhh
Q 000113 1741 EICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEH---TVNALEKKVYEMNGEVERHHL 1817 (2159)
Q Consensus 1741 e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~---tin~LE~kV~~~k~e~~r~r~ 1817 (2159)
||-+|+.+|..|.-. ++- |..++.-|.+.+.-++- ||-||+-+|++-++-.+.-|-
T Consensus 25 ei~~L~~~L~~AEea------L~~---------------Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERa 83 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEA------LVA---------------KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERH 83 (110)
T ss_dssp HHHHHHHHHHHHHHH------HHH---------------HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchh
Confidence 677888888776532 222 22233333333333333 899999999999998888888
Q ss_pred hHhhHHHHHHHHHHhh
Q 000113 1818 IRDSLELEIQALRRRL 1833 (2159)
Q Consensus 1818 ~r~~le~e~~~~~~~~ 1833 (2159)
-|+.+--|.+.|..++
T Consensus 84 dREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 84 AREKLVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHH
Confidence 8887666666555544
No 182
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=40.17 E-value=14 Score=42.82 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=21.8
Q ss_pred hchhHHHHhhcCC-----CceeEeecccCCCcceee
Q 000113 223 AGLPMVENCLSGY-----NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 223 v~~PLV~~vLeGy-----N~TIFAYGQTGSGKTYTM 253 (2159)
+...++..++.|+ ...|+-.|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4445666666654 245788999999999764
No 183
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=39.94 E-value=11 Score=47.95 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=22.7
Q ss_pred CChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 214 ISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 214 aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
.-|.+++ ..++.|.+ +++.++||||||.+..
T Consensus 47 p~Q~~~i--------~~il~g~d--~lv~~pTGsGKTl~~~ 77 (591)
T 2v1x_A 47 PLQLETI--------NVTMAGKE--VFLVMPTGGGKSLCYQ 77 (591)
T ss_dssp TTHHHHH--------HHHHTTCC--EEEECCTTSCTTHHHH
T ss_pred HHHHHHH--------HHHHcCCC--EEEEECCCChHHHHHH
Confidence 3576554 45567876 6888999999998653
No 184
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=39.65 E-value=7.5 Score=47.45 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=19.7
Q ss_pred HHHHhhcCCCceeEeecccCCCcceee
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
++..++.|.+. ++..|+||||||.+.
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 34567778654 578899999999973
No 185
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=39.56 E-value=9.7 Score=44.97 Aligned_cols=18 Identities=44% Similarity=0.602 Sum_probs=15.7
Q ss_pred CceeEeecccCCCcceee
Q 000113 236 NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM 253 (2159)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457899999999999875
No 186
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=39.46 E-value=93 Score=33.95 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhh
Q 000113 1654 LRVLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSK 1733 (2159)
Q Consensus 1654 Lr~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~ 1733 (2159)
|+..+..+-.+....+++|.+|.+.++.|=.|++-|+-- +..+++.+.++..
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq----------------------------~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIE----------------------------NNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHH
Confidence 333333334444455677777777777777776644433 5555666777766
Q ss_pred hhhhhHH
Q 000113 1734 ERDKLWV 1740 (2159)
Q Consensus 1734 Erd~l~~ 1740 (2159)
|-+.|-.
T Consensus 125 EN~~LV~ 131 (152)
T 3a7p_A 125 EHSQLVA 131 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666644
No 187
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=39.26 E-value=9.6 Score=40.73 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=23.8
Q ss_pred chhHHHHhhc-CCC--ceeEeecccCCCcceee
Q 000113 224 GLPMVENCLS-GYN--SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 224 ~~PLV~~vLe-GyN--~TIFAYGQTGSGKTYTM 253 (2159)
+-|-++.++. |+. ..+.-+|++|||||..+
T Consensus 5 G~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 5 GTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp SCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred CcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 4577888886 553 46788999999999876
No 188
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=38.40 E-value=9.4 Score=48.43 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=19.3
Q ss_pred HHHhhcCCCceeEeecccCCCcceeecc
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
|..++.|.| ++..++||||||.+..-
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~~~~ 41 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRVAVY 41 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHHHHH
Confidence 344566765 67889999999987644
No 189
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=38.20 E-value=9.8 Score=45.93 Aligned_cols=37 Identities=30% Similarity=0.138 Sum_probs=24.5
Q ss_pred cCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccc
Q 000113 210 ACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 210 Fde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~ 256 (2159)
|.+..-|.+.+. .++.|.+ ++..|+||||||++..-.
T Consensus 92 ~~l~~~Q~~ai~--------~i~~~~~--~ll~~~TGsGKT~~~l~~ 128 (472)
T 2fwr_A 92 ISLRDYQEKALE--------RWLVDKR--GCIVLPTGSGKTHVAMAA 128 (472)
T ss_dssp CCBCHHHHHHHH--------HHTTTTE--EEEECCTTSCHHHHHHHH
T ss_pred CCcCHHHHHHHH--------HHHhcCC--EEEEeCCCCCHHHHHHHH
Confidence 345555666554 3455543 677899999999987543
No 190
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=38.20 E-value=11 Score=47.13 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=19.5
Q ss_pred HHHhhcCCCceeEeecccCCCcceee
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
|..++.|-+..+++.++||||||.+.
T Consensus 52 i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 52 IKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 44556555557888999999999873
No 191
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=38.03 E-value=8.8 Score=49.05 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=17.9
Q ss_pred HHHhhcCCCceeEeecccCCCcceeecc
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
|..++..-. -.+-.|+.|||||+|+..
T Consensus 198 V~~al~~~~-~~lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 198 VLFALSQKE-LAIIHGPPGTGKTTTVVE 224 (646)
T ss_dssp HHHHHHCSS-EEEEECCTTSCHHHHHHH
T ss_pred HHHHhcCCC-ceEEECCCCCCHHHHHHH
Confidence 444443222 345679999999999854
No 192
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=38.00 E-value=3e+02 Score=29.82 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHhHH--HHhhhhchhhHHHH-hhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHH
Q 000113 1595 TEKLFSTLSQVRQDLDRKASQLDNLLLQHEK--LEASLTDTENALVI-AKGTIDTLSDQNADLRVLLKDLYLKKSEAEEH 1671 (2159)
Q Consensus 1595 ~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~--LE~~L~d~~~al~~-~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~ 1671 (2159)
+++||-+|..+| .+.-.|+.+.++. |=.+.+|.+-.-.+ -++.-+.|+.+.++=..+|.+... .++.|
T Consensus 24 ~~elik~L~~le------~sassDa~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~---rL~~E 94 (152)
T 4fla_A 24 TEELIKALQDLE------NAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNG---RLAAE 94 (152)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHhh------ccccchHHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 466666666543 3455555555331 12233333211111 456677777777777777776653 57889
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhh
Q 000113 1672 LEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKERDKLWVEICSL 1745 (2159)
Q Consensus 1672 L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l 1745 (2159)
+++++.+++-|+.=+...... ..+.---++.-++.+.+|..-|..|..=|-+|
T Consensus 95 ~~dR~~L~~~L~~~~~~~~~~---------------------l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 95 LEDRRQLARMLVEYTQNQKDV---------------------LSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999988876665 34444445666677777777666666655444
No 193
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.00 E-value=1.1e+02 Score=31.33 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=32.8
Q ss_pred HHhHHHHhhhhchhhHHHH--------hhhhhhHHhhhhHHHHHHHHHH
Q 000113 1621 LQHEKLEASLTDTENALVI--------AKGTIDTLSDQNADLRVLLKDL 1661 (2159)
Q Consensus 1621 ~~~~~LE~~L~d~~~al~~--------~~~~~~~ls~eN~eLr~~l~~~ 1661 (2159)
.....++.+|-|..++||- |+-.-..+-..|..|+.+|.|.
T Consensus 47 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6778889999999999987 6666677777888888888763
No 194
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=37.48 E-value=7.4 Score=46.90 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=16.6
Q ss_pred CCceeEeecccCCCcceee
Q 000113 235 YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYTM 253 (2159)
.|..++..|.||||||.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 3677899999999999986
No 195
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=37.07 E-value=16 Score=45.02 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=21.2
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
++..+-.+....++=||++|+|||+...+
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 33334345566788899999999998755
No 196
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=36.99 E-value=2.1e+02 Score=28.00 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHH
Q 000113 1384 EVEQLKFLIRLKEEENELLMDHLHFNMSEIDTSISLLEGCFLQVQKEVEDRFKELYSDALLMGRDVHHFISNSKSLQD 1461 (2159)
Q Consensus 1384 evq~Lks~i~~ke~en~~L~~~~~~~L~em~~~v~~LE~~~~q~q~~~~e~~~~~~~d~~~~~~~~l~~~~~~r~~le 1461 (2159)
++++|++.+..-+.....++.++..-+.+....|..||.-..++..+++.... =|-+++.+|--+-.=|.--|.+||
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~-EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLR-EYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHc
Confidence 56778888888888888888899999999999999999999999999887765 567777666555444444444444
No 197
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.56 E-value=34 Score=36.63 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=52.3
Q ss_pred hhHHHHhhHHHHhhhhcccchhhhhhhccccchhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHH
Q 000113 1559 SLKKELQRKEVLLQGLLFDFSLLQESASNKKDIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALV 1638 (2159)
Q Consensus 1559 ~l~~El~RK~~~~kGL~FD~sLLQESaSn~kD~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~ 1638 (2159)
-.+++|.-...-+++|-..=.=|.+-.+.-+|..+++.+|... +..|-..+ ..+=.....++.+|-|..++||
T Consensus 12 ~~r~~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~---l~eE~~~R----~~aE~~~~~ie~ElE~LTasLF 84 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLRED---IAKENELR----TKAEEEADKLNKEVEDLTASLF 84 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHH---HHHTTSHH----HHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555442111222223334555555554332 23332222 3334477888999999999998
Q ss_pred H--------hhhhhhHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000113 1639 I--------AKGTIDTLSDQNADLRVLLKDLYLKKSEAEEHLEEQKEVI 1679 (2159)
Q Consensus 1639 ~--------~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e~~L~e~~~vi 1679 (2159)
- |+-.-..+-..|..|+..|.|.-......+++|.+-+.|+
T Consensus 85 eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 85 DEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 4444455555566666555555555555555555544444
No 198
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=36.48 E-value=8.8 Score=50.72 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=21.4
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
++..+..+....++-||++|+|||+.+.+
T Consensus 182 l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 182 VIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp HHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred HHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 44444456556678899999999998865
No 199
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=35.84 E-value=48 Score=33.11 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhHHHHHHHhc
Q 000113 2084 ILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISELDDMVKMLIG 2131 (2159)
Q Consensus 2084 ~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd~~vk~L~g 2131 (2159)
=.||+-.=+.=++|++-+.-..+-|..||..|+.+|..|..++..|-+
T Consensus 24 N~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 24 NIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888888888888888888888888888888888887764
No 200
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=35.76 E-value=8.5 Score=45.83 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.1
Q ss_pred CceeEeecccCCCcceee
Q 000113 236 NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM 253 (2159)
|..++-.|+||||||+++
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 455677899999999987
No 201
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.65 E-value=71 Score=32.73 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=30.7
Q ss_pred hhhhhhHHHHHHHHhhhhHHHHHHHHHHHHhhhc
Q 000113 732 NQENDTTTELENCRNMNSKLMREVEELRTELRNC 765 (2159)
Q Consensus 732 ~~~~~~~~~~~~c~~~~~~l~r~~~~~~~~~~~~ 765 (2159)
.+...+.++++.-+.+|.+|.++++.|..+|+..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999764
No 202
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=35.38 E-value=12 Score=40.28 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=22.6
Q ss_pred chhHHHHhhc-CC--CceeEeecccCCCcceee
Q 000113 224 GLPMVENCLS-GY--NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 224 ~~PLV~~vLe-Gy--N~TIFAYGQTGSGKTYTM 253 (2159)
+-|-++.++. |+ ...+.-+|++|||||..+
T Consensus 10 G~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 10 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SCHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 4577888885 44 345777899999999875
No 203
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=34.95 E-value=11 Score=41.05 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=22.1
Q ss_pred chhHHHHhhcC-C--CceeEeecccCCCcceee
Q 000113 224 GLPMVENCLSG-Y--NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 224 ~~PLV~~vLeG-y--N~TIFAYGQTGSGKTYTM 253 (2159)
+-|-++.++.| + ...+.-+|++|||||..+
T Consensus 8 G~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 8 GIPGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp CCTTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred CchhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 44567777654 3 446788999999999984
No 204
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.66 E-value=56 Score=30.53 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhHHHHHHHh
Q 000113 2085 LAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISELDDMVKMLI 2130 (2159)
Q Consensus 2085 ~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd~~vk~L~ 2130 (2159)
+||+--=+.=++|.+-|..+.+.|+.+|+.|+.+|..|..+|..|-
T Consensus 12 ~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 12 TAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444667777888888888888888888888888888887764
No 205
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=34.52 E-value=53 Score=32.16 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhHHHHHHHhc
Q 000113 2083 DILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISELDDMVKMLIG 2131 (2159)
Q Consensus 2083 d~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd~~vk~L~g 2131 (2159)
-=.||+-.=++=++|++-+.-..+-|..||..|+.+|..|..+|..|-+
T Consensus 23 NN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 23 NNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888889999999999999999999999999999999988765
No 206
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=34.46 E-value=9.8 Score=44.76 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=15.3
Q ss_pred CceeEeecccCCCcceee
Q 000113 236 NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM 253 (2159)
...|+=||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999875
No 207
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=34.10 E-value=12 Score=43.47 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=17.2
Q ss_pred CCCceeEeecccCCCcceee
Q 000113 234 GYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 234 GyN~TIFAYGQTGSGKTYTM 253 (2159)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45778999999999999875
No 208
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=33.83 E-value=25 Score=32.06 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=24.4
Q ss_pred HHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHH
Q 000113 1787 LEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLE 1823 (2159)
Q Consensus 1787 le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le 1823 (2159)
-||||..||.+|.-||.+++ -|-+++..+++.|.
T Consensus 10 AERsV~KLek~ID~LEdeL~---~eKek~~~i~~eLD 43 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELY---AQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHH
Confidence 47888888888888886655 45566666666653
No 209
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=33.64 E-value=19 Score=47.87 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=51.2
Q ss_pred eeEeceecCCCCChHHHHHhhchhHH-HHhhcCCC----ceeEeecccCCCcceeeccccccc---------cCCCCCCC
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMV-ENCLSGYN----SCMFAYGQTGSGKTYTMMGEINEV---------EGKLNDDC 268 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV-~~vLeGyN----~TIFAYGQTGSGKTYTM~G~~~~~---------~g~~~e~~ 268 (2159)
..+|+.|-|-..-=+++.+.+..|+- ..++.++. ..|+-||+.|+|||+..---.... ........
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 36789998887777788887777775 34566654 469999999999996542110000 00112334
Q ss_pred CChhHHHHHHHHHH
Q 000113 269 GITPRIFEYLFSRI 282 (2159)
Q Consensus 269 GIIPRale~LF~~I 282 (2159)
|-..+.++.+|...
T Consensus 280 gese~~lr~lF~~A 293 (806)
T 3cf2_A 280 GESESNLRKAFEEA 293 (806)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 66667777777653
No 210
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.15 E-value=11 Score=43.44 Aligned_cols=16 Identities=38% Similarity=0.783 Sum_probs=14.3
Q ss_pred eEeecccCCCcceeec
Q 000113 239 MFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM~ 254 (2159)
++=||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999999874
No 211
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=32.95 E-value=17 Score=48.07 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=24.8
Q ss_pred CCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 212 EMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 212 e~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
+..-|..++.. +..+.-.|....++..|+||||||.+..
T Consensus 369 lt~~Q~~ai~~----I~~~l~~~~~~~~Ll~a~TGSGKTlval 407 (780)
T 1gm5_A 369 LTNAQKRAHQE----IRNDMISEKPMNRLLQGDVGSGKTVVAQ 407 (780)
T ss_dssp CCHHHHHHHHH----HHHHHHSSSCCCCEEECCSSSSHHHHHH
T ss_pred CCHHHHHHHHH----HHhhccccCCCcEEEEcCCCCCHHHHHH
Confidence 34445444433 3334445565678999999999998764
No 212
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=32.61 E-value=20 Score=40.32 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=18.9
Q ss_pred hhHHHHhhcCCC-----ceeEeecccCCCccee
Q 000113 225 LPMVENCLSGYN-----SCMFAYGQTGSGKTYT 252 (2159)
Q Consensus 225 ~PLV~~vLeGyN-----~TIFAYGQTGSGKTYT 252 (2159)
..++..++.|+. ..|+-.|+.|||||+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 334445555443 3578899999999975
No 213
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=32.47 E-value=19 Score=46.73 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=23.9
Q ss_pred ChHHHHHhhchhHHHHhhcCCC------ceeEeecccCCCcceee
Q 000113 215 SQEKLFRVAGLPMVENCLSGYN------SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 215 SQEeVFe~v~~PLV~~vLeGyN------~TIFAYGQTGSGKTYTM 253 (2159)
.|..+...+... |..+..|.. +.|+=||+||+|||++.
T Consensus 495 Gq~~a~~~l~~~-i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAKA-VRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHHH-HHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHHH-HHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 455555444433 333344443 36899999999999875
No 214
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=32.47 E-value=1.7e+02 Score=28.99 Aligned_cols=74 Identities=24% Similarity=0.330 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHH
Q 000113 1652 ADLRVLLKDLYLKKSEAEEHLEEQKEVITG----LEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEE 1727 (2159)
Q Consensus 1652 ~eLr~~l~~~~~~k~~~e~~L~e~~~vie~----LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 1727 (2159)
.+||.+|..+...+..++-++.--...++. .|.|+...+++ + ..|-.++.+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~---------------------E----~d~~~Lrkd 57 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA---------------------E----NTLQSFRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------H----HHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------H----HHHHHHHhh
Confidence 467777777777776666666555555443 46666654444 2 234566777
Q ss_pred HHHHhhhhhhhHHHHHhhHHHHH
Q 000113 1728 LRKVSKERDKLWVEICSLNDKLA 1750 (2159)
Q Consensus 1728 l~~~~~Erd~l~~e~~~l~~kle 1750 (2159)
++.++--|-.|+..|.+|++.+.
T Consensus 58 vD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 58 VDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888887764
No 215
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=32.46 E-value=17 Score=46.07 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=17.4
Q ss_pred HHhhcCCCceeEeecccCCCcceee
Q 000113 229 ENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 229 ~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..++.|.| ++..++||||||...
T Consensus 23 ~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 23 LPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHcCCC--EEEEcCCCchHHHHH
Confidence 34566766 578889999999864
No 216
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=32.32 E-value=14 Score=47.20 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.8
Q ss_pred ceeEeecccCCCcceeecc
Q 000113 237 SCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G 255 (2159)
..++-.|+.|||||+|+..
T Consensus 196 ~~~li~GppGTGKT~~~~~ 214 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSAT 214 (624)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 4567899999999999754
No 217
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=31.99 E-value=10 Score=43.43 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=17.0
Q ss_pred ceeEeecccCCCcceeecc
Q 000113 237 SCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G 255 (2159)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4689999999999999966
No 218
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.93 E-value=2.6e+02 Score=27.91 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=19.1
Q ss_pred HHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhhhccc
Q 000113 1791 IEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLSTVQN 1838 (2159)
Q Consensus 1791 veele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~~v~n 1838 (2159)
+++++..+.-+..+...+... +..++.++..++..+.....
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~-------~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQR-------IGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhc
Confidence 444444444444444444333 33445555555555555443
No 219
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=31.89 E-value=11 Score=45.82 Aligned_cols=36 Identities=11% Similarity=-0.122 Sum_probs=24.2
Q ss_pred cCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 210 ACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 210 Fde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
|.+..-|...+.. ++.|. .++..|+||||||.+..-
T Consensus 112 ~~l~~~Q~~ai~~--------~~~~~--~~ll~~~tGsGKT~~~~~ 147 (510)
T 2oca_A 112 IEPHWYQKDAVFE--------GLVNR--RRILNLPTSAGRSLIQAL 147 (510)
T ss_dssp ECCCHHHHHHHHH--------HHHHS--EEEEECCSTTTHHHHHHH
T ss_pred CCCCHHHHHHHHH--------HHhcC--CcEEEeCCCCCHHHHHHH
Confidence 4555567666544 34453 357789999999999754
No 220
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=31.81 E-value=21 Score=47.14 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=15.3
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
+.|+=||+||+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 58999999999999875
No 221
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.79 E-value=1.4e+02 Score=29.48 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHH
Q 000113 1384 EVEQLKFLIRLKEEENELLMDHLHFNMSEIDTSISLLEGCFLQVQKEVEDRFKELYSDALLMGRDVHHFISNSKSLQD 1461 (2159)
Q Consensus 1384 evq~Lks~i~~ke~en~~L~~~~~~~L~em~~~v~~LE~~~~q~q~~~~e~~~~~~~d~~~~~~~~l~~~~~~r~~le 1461 (2159)
+++.|++.+.-.+.....++.++..-+..+...|..||.-..++..+++.... =|-+++.+|--+=.=|.--|.+||
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~-EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLD-EYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHc
Confidence 56778888887888888888899999999999999999999999988887765 567777777655544444455555
No 222
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.50 E-value=2.5e+02 Score=29.37 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhh
Q 000113 1380 SLTDEVEQLKFLIRLKEEENELLMDHLHFNMSEIDTSISLLEGCFLQVQKEVEDRFKELYSDALLMGRDVHHFISNSKSL 1459 (2159)
Q Consensus 1380 ~L~~evq~Lks~i~~ke~en~~L~~~~~~~L~em~~~v~~LE~~~~q~q~~~~e~~~~~~~d~~~~~~~~l~~~~~~r~~ 1459 (2159)
+|-.+++++++....-+.....++.+...-+......|..||.-..++..+++.... =|-+++.+|--+-.-|.--|.+
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~-EYq~Ll~vKl~Ld~EIatYRkL 127 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQ-EYKILLDVKTRLEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777788888888999999999999999999999888776 3567766665443333333333
Q ss_pred H
Q 000113 1460 Q 1460 (2159)
Q Consensus 1460 l 1460 (2159)
|
T Consensus 128 L 128 (131)
T 3tnu_A 128 L 128 (131)
T ss_dssp T
T ss_pred H
Confidence 3
No 223
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=31.31 E-value=1.9e+02 Score=28.93 Aligned_cols=17 Identities=35% Similarity=0.243 Sum_probs=10.3
Q ss_pred HHhhhhHHHHHHHHHHH
Q 000113 1646 TLSDQNADLRVLLKDLY 1662 (2159)
Q Consensus 1646 ~ls~eN~eLr~~l~~~~ 1662 (2159)
-|-.+|..|.+.|+.+.
T Consensus 27 ~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 27 FLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34556777766666544
No 224
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=31.08 E-value=17 Score=44.48 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=25.1
Q ss_pred CCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeec
Q 000113 213 MISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 213 ~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
+..|..++..+. ..+-. -.+.++-.|..|||||+++.
T Consensus 27 n~~Q~~av~~~~----~~i~~-~~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKE-KKHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHH----HHHHS-SSCEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHH----HHHhc-CCCEEEEEeCCCCCHHHHHH
Confidence 346877776543 22222 34588999999999998773
No 225
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=30.70 E-value=11 Score=41.13 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=14.4
Q ss_pred ceeEeecccCCCcceeec
Q 000113 237 SCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~ 254 (2159)
..+.-+|++|||||..+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 345668999999999874
No 226
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=30.49 E-value=14 Score=46.45 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=17.6
Q ss_pred CCceeEeecccCCCcceeecc
Q 000113 235 YNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYTM~G 255 (2159)
.++.++-.|..|||||+|+..
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~~ 41 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLVH 41 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHH
Confidence 366788999999999999854
No 227
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.48 E-value=2.5e+02 Score=29.25 Aligned_cols=78 Identities=9% Similarity=0.124 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 000113 1380 SLTDEVEQLKFLIRLKEEENELLMDHLHFNMSEIDTSISLLEGCFLQVQKEVEDRFKELYSDALLMGRDVHHFISNSKS 1458 (2159)
Q Consensus 1380 ~L~~evq~Lks~i~~ke~en~~L~~~~~~~L~em~~~v~~LE~~~~q~q~~~~e~~~~~~~d~~~~~~~~l~~~~~~r~ 1458 (2159)
+|-.++++|++.....+......+.+...-+......|..||.-..++..+++.... =|-+++.+|--+-.-|.--|.
T Consensus 47 ~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~-EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 47 RLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLR-EYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777788888888999999999999999999999888776 356776666544333333333
No 228
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=30.44 E-value=1e+02 Score=38.80 Aligned_cols=116 Identities=14% Similarity=0.122 Sum_probs=86.7
Q ss_pred HHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHh--------hhhhHhhHHHHHHHHHHhhhhccccccccccccccCCCch
Q 000113 1783 EVKILEHSIEELEHTVNALEKKVYEMNGEVER--------HHLIRDSLELEIQALRRRLSTVQNFSDIVDSENINAGHTE 1854 (2159)
Q Consensus 1783 evk~le~sveele~tin~LE~kV~~~k~e~~r--------~r~~r~~le~e~~~~~~~~~~v~n~~~~~~~~~~~~~~~~ 1854 (2159)
++..|+..++++...+..+...++.|.++|=- +|-+|+++ .-+|.+|-+-+||+-+-.+. ||-..
T Consensus 102 dI~~Lk~~~~~~~~~l~~~~~~~~ei~~diG~~~~~~d~~~rTV~~DI----~~IK~elG~Y~g~DING~p~---pgs~~ 174 (487)
T 2bsg_A 102 DISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAEANSVYRTIRNDL----LWIKRELGQYTGQDINGLPV---VGNPS 174 (487)
T ss_pred HHHHHhcchhhhhhhhhhhccchHHHHhhcCccCcccCCCccccchhH----HHHHHHhccCCCCCCCCCcC---CCCCC
Confidence 37888888888888888888888888888766 56777764 56999999999998766655 46678
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHhhhhhhhhhhHH
Q 000113 1855 DQMSRKLQDRLLQLQEAHHRIQLLEREKEEQN--EEIKRCKDYLSEVVLHSEA 1905 (2159)
Q Consensus 1855 ~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~--~ei~q~k~~isel~lh~ea 1905 (2159)
.+|+|+...--.++-.-..+|..||.....-| .=+....+-=+||--|+.+
T Consensus 175 tGmK~rV~~Nt~~i~~~~~RIt~LE~~~~dSDVG~Lt~ev~~LR~ElG~~~~~ 227 (487)
T 2bsg_A 175 SGMKHRIINNTDVITSQGIRLSELETKFIESDVGSLTIEVGNLREELGPKPPS 227 (487)
T ss_pred cceehhhhhhHHHHHhcccHHHHHHHhcccCCchHHHHHHHHHHHHhCCCCCC
Confidence 99999999888888888889999997644322 1122222233567777766
No 229
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=30.29 E-value=1e+02 Score=32.85 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhHHHHHHHhccc
Q 000113 2054 QIILNLRKRIEDLIEEHESCTSILKQREADILAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISELDDMVKMLIGTQ 2133 (2159)
Q Consensus 2054 ~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd~~vk~L~g~q 2133 (2159)
..|..|+.-.+.+-.|-+-.-.|++---.=+..-|-.+.||+.|--+-..+...|..|+..+++..---|.-.|+=+.+|
T Consensus 11 ~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQ 90 (167)
T 4gkw_A 11 DEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQ 90 (167)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHH
Confidence 34444444444444443333444444444455677788888888888888888888888888887777776666655555
Q ss_pred chh
Q 000113 2134 STQ 2136 (2159)
Q Consensus 2134 n~q 2136 (2159)
|.|
T Consensus 91 nQQ 93 (167)
T 4gkw_A 91 NQQ 93 (167)
T ss_dssp HHH
T ss_pred hHh
Confidence 543
No 230
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=30.23 E-value=23 Score=45.98 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=23.8
Q ss_pred ChHHHHHhhchhHHHHhhcCCC------ceeEeecccCCCcceee
Q 000113 215 SQEKLFRVAGLPMVENCLSGYN------SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 215 SQEeVFe~v~~PLV~~vLeGyN------~TIFAYGQTGSGKTYTM 253 (2159)
.|.++-..+.. .+.....|.. +.++=||+||+|||++.
T Consensus 462 g~~~~~~~l~~-~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 462 GQDKAIEALTE-AIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp SCHHHHHHHHH-HHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHH-HHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 44444443332 3344444543 57899999999999885
No 231
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.10 E-value=1.4e+02 Score=38.04 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAV 1764 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ 1764 (2159)
+.-+...|..|++.|.++..=|-.-..=+-.+.+.|...+..+.+|+...-
T Consensus 59 ErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtyn 109 (562)
T 3ghg_A 59 NQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYN 109 (562)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 344555566666666666555555555555555555555555555555443
No 232
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=30.05 E-value=2.1e+02 Score=29.85 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhhh
Q 000113 1656 VLLKDLYLKKSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKER 1735 (2159)
Q Consensus 1656 ~~l~~~~~~k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~Er 1735 (2159)
+.+.++.+.-..+|+.|.++..-|+-|..+|..+.-. . ....-|--.++--+++|..=...|
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~-------l-----------E~I~vLkaQv~IY~~DF~aERadR 85 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIV-------M-----------ETVPVLKAQADIYKADFQAERHAR 85 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-----------THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-----------HHHHHHHHHHHHHHHHHccchhhH
Confidence 3577888888999999999999999999999875543 1 113345556777778888888888
Q ss_pred hhhHHHHHhhHHHHHHHHHh
Q 000113 1736 DKLWVEICSLNDKLAMAYAL 1755 (2159)
Q Consensus 1736 d~l~~e~~~l~~kle~a~a~ 1755 (2159)
..++.|+.-|.++|+-.+.-
T Consensus 86 Ekl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 88888888888887765543
No 233
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.75 E-value=84 Score=29.08 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=30.9
Q ss_pred HhhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHh
Q 000113 1771 EASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVER 1814 (2159)
Q Consensus 1771 e~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~r 1814 (2159)
+-.|.|.++=+.+|.-|+.--.+|..+|+.|..+|..|+.-+-.
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~ 61 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMN 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777888888888888888888888888888877765543
No 234
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=29.70 E-value=5.9e+02 Score=27.86 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=53.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHHHHhhhhhhHHhhhhHHHHHHHHHHHHHHhhHH
Q 000113 1590 DIKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENALVIAKGTIDTLSDQNADLRVLLKDLYLKKSEAE 1669 (2159)
Q Consensus 1590 D~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al~~~~~~~~~ls~eN~eLr~~l~~~~~~k~~~e 1669 (2159)
|...+.+++.- ++.+|+.=-.-++..-..+..||.+|.-.++.+....-+-..-+..-..+-..|+.+-.+-.+++
T Consensus 15 ~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE 90 (155)
T 2efr_A 15 KNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 90 (155)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444 88888877677777777888888888877777766333333333333444455555555555554
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 000113 1670 EHLEEQKEVITGLEKEILH 1688 (2159)
Q Consensus 1670 ~~L~e~~~vie~LE~eil~ 1688 (2159)
.--+.--.-+..||++|-.
T Consensus 91 ~RAE~AERsv~kLEk~id~ 109 (155)
T 2efr_A 91 TRAEFAERSVTKLEKSIDD 109 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 235
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.56 E-value=74 Score=39.04 Aligned_cols=56 Identities=23% Similarity=0.367 Sum_probs=51.3
Q ss_pred hhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhh
Q 000113 1778 EQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRL 1833 (2159)
Q Consensus 1778 e~keeevk~le~sveele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~ 1833 (2159)
++.++|++-|+..+++|+..|.-++..+..+++........|..|--++|.+|-.+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 56789999999999999999999999999999999999999999999999998743
No 236
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=29.44 E-value=20 Score=45.01 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=23.0
Q ss_pred ChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 215 SQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 215 SQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
.|+++-. -++..++.| +.|+=||++|+|||+..-.
T Consensus 26 Gq~~~i~----~l~~al~~~--~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 26 ERSHAIR----LCLLAALSG--ESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp SCHHHHH----HHHHHHHHT--CEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHH----HHHHHHhcC--CeeEeecCchHHHHHHHHH
Confidence 4555443 334444555 4678899999999998643
No 237
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.39 E-value=17 Score=45.33 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.6
Q ss_pred CceeEeecccCCCcceee
Q 000113 236 NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM 253 (2159)
...++-||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357888999999999986
No 238
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=29.28 E-value=15 Score=37.28 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.2
Q ss_pred eeEeecccCCCcceee
Q 000113 238 CMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM 253 (2159)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999753
No 239
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=28.99 E-value=23 Score=45.83 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=21.3
Q ss_pred HHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 227 MVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 227 LV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
++..+.......++-||++|+|||+.+.+
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 34444445566678899999999998755
No 240
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=28.37 E-value=17 Score=48.61 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=24.9
Q ss_pred EeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeeccc
Q 000113 205 TFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMGE 256 (2159)
Q Consensus 205 tFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G~ 256 (2159)
.+...+.+..-|.+++ ..++.|.| ++..++||||||.+..-+
T Consensus 242 ~l~~~~~~r~~Q~~ai--------~~il~g~~--~ll~a~TGsGKTl~~~~~ 283 (936)
T 4a2w_A 242 PVYETKKARSYQIELA--------QPAINGKN--ALICAPTGSGKTFVSILI 283 (936)
T ss_dssp ------CCCHHHHHHH--------HHHHTTCC--EEEECCTTSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHH--------HHHHcCCC--EEEEeCCCchHHHHHHHH
Confidence 3333455555566554 34467866 567889999999986543
No 241
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=28.28 E-value=19 Score=47.02 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=19.0
Q ss_pred HHHhhcCCCceeEeecccCCCcceeecc
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
+..++.|.| ++..++||||||.+..-
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~~~ 282 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVSIL 282 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHHHH
Confidence 344567765 57788999999988544
No 242
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=27.94 E-value=19 Score=39.97 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=18.0
Q ss_pred hHHHHhhcCCCceeEeecccCCCcceee
Q 000113 226 PMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 226 PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
++++++-.|-- +.-.|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 34555555544 344899999999876
No 243
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=27.50 E-value=1.2e+03 Score=30.65 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHhhh------hhhhHHHHHHhHHHHhhhhchhhHHHH
Q 000113 1594 ETEKLFSTLSQVRQDLDRK------ASQLDNLLLQHEKLEASLTDTENALVI 1639 (2159)
Q Consensus 1594 e~e~l~~~l~~~~~EL~~K------ss~l~d~~~~~~~LE~~L~d~~~al~~ 1639 (2159)
..+++..-|...+..|..- ...+..++..|+.+++.|......+..
T Consensus 378 ~~~~~~~Wl~~~e~~l~~~~~g~~dl~~v~~ll~kh~~f~~el~~~~~~v~~ 429 (863)
T 1sjj_A 378 KASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQ 429 (863)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTSSCHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444421 123444555666666666555444433
No 244
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.47 E-value=88 Score=29.24 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=22.9
Q ss_pred hhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhhhHH
Q 000113 1775 LYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNGEVE 1813 (2159)
Q Consensus 1775 ~yae~keeevk~le~sveele~tin~LE~kV~~~k~e~~ 1813 (2159)
=|-.-|-++..-|+..|++|+.....|+.+|..+..|+.
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666655554443
No 245
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=27.12 E-value=13 Score=46.34 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=18.2
Q ss_pred HHHhhcCCCceeEeecccCCCcceeec
Q 000113 228 VENCLSGYNSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 228 V~~vLeGyN~TIFAYGQTGSGKTYTM~ 254 (2159)
|..++.|.+ ++..++||||||.+.+
T Consensus 34 i~~il~g~d--~lv~apTGsGKTl~~~ 58 (523)
T 1oyw_A 34 IDTVLSGRD--CLVVMPTGGGKSLCYQ 58 (523)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCcHHHHHHH
Confidence 445567875 5667899999998653
No 246
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=26.77 E-value=20 Score=43.55 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=14.5
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
-.++..|+||||||...
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35788999999999985
No 247
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=26.74 E-value=19 Score=44.02 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.2
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
..++..|+||||||.+.
T Consensus 22 ~~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKI 38 (459)
T ss_dssp CEEEECCCTTSCTTTTH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 35778899999999983
No 248
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.29 E-value=1.5e+02 Score=29.72 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh--------hhhhHHHHH
Q 000113 1715 DKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYA--------EQKEEEVKI 1786 (2159)
Q Consensus 1715 ~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~ya--------e~keeevk~ 1786 (2159)
.++...+..++..+..+...+..+..++..+ +...-|-...-+-+++|- -.+++=+..
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~--------------~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~ 74 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEA--------------KKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAE 74 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHH
Confidence 3444445555555555555555554444333 222223333334456663 356777788
Q ss_pred HHHhHHHHHhHHHHHHhHhhhhhhhHH
Q 000113 1787 LEHSIEELEHTVNALEKKVYEMNGEVE 1813 (2159)
Q Consensus 1787 le~sveele~tin~LE~kV~~~k~e~~ 1813 (2159)
|+..++.++..|..|+++...+..++.
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~ 101 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLK 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988887776666554
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=25.61 E-value=22 Score=46.91 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=36.3
Q ss_pred eeEeceecCCCCChHHHHHhhchhHHH-HhhcC----CCceeEeecccCCCcceee
Q 000113 203 RFTFDHIACEMISQEKLFRVAGLPMVE-NCLSG----YNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 203 ~FtFD~VFde~aSQEeVFe~v~~PLV~-~vLeG----yN~TIFAYGQTGSGKTYTM 253 (2159)
.++||.|.+....=+.+.+.+..|+.. .++.. ...+|+=||++|||||+..
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 478999988776667777777665543 23332 2346889999999999765
No 250
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=25.55 E-value=24 Score=47.71 Aligned_cols=32 Identities=25% Similarity=0.177 Sum_probs=22.2
Q ss_pred CCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCccee
Q 000113 211 CEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYT 252 (2159)
Q Consensus 211 de~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYT 252 (2159)
.+..-|.++ |..++.|. .++..|+||||||.+
T Consensus 39 ~l~~~Q~~a--------I~~il~g~--~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 39 ELDTFQKEA--------VYHLEQGD--SVFVAAHTSAGKTVV 70 (997)
T ss_dssp CCCHHHHHH--------HHHHHTTC--EEEEECCTTSCSHHH
T ss_pred CCCHHHHHH--------HHHHHcCC--CEEEEECCCCcHHHH
Confidence 345556654 34556674 578899999999964
No 251
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=25.37 E-value=25 Score=45.08 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=22.3
Q ss_pred CCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 213 MISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 213 ~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
..-|.++|... +.. +..++..|+||||||...
T Consensus 32 ~~~Q~~~i~~~-------~~~--~~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 32 NPPQTEAVKKG-------LLE--GNRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp CHHHHHHHHTT-------TTT--TCCEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHH-------hcC--CCcEEEEcCCCCcHHHHH
Confidence 33577776542 223 356788999999999885
No 252
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.99 E-value=3.2e+02 Score=28.53 Aligned_cols=90 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhH----HHHH
Q 000113 1649 DQNADLRVLLKDLYLKKSEAEEHLEEQKE----VITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDK----LCEE 1720 (2159)
Q Consensus 1649 ~eN~eLr~~l~~~~~~k~~~e~~L~e~~~----vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 1720 (2159)
+.|.+|+.....+-...-+....+..... .|.+|++||-.|...-..+..-+ .||-.-.||+.+ ..++
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~i----ReLEq~NDDLER~~R~t~~S 78 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV----RELEQANDDLERAKRATIVS 78 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhchHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHhhhhhhhHHHH
Q 000113 1721 VESVEEELRKVSKERDKLWVEI 1742 (2159)
Q Consensus 1721 v~~l~~~l~~~~~Erd~l~~e~ 1742 (2159)
+++++..|+.++-..--|+.|+
T Consensus 79 LeD~E~k~n~aiErnalLE~El 100 (111)
T 2v66_B 79 LEDFEQRLNQAIERNAFLESEL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 253
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=24.57 E-value=20 Score=45.83 Aligned_cols=21 Identities=24% Similarity=0.312 Sum_probs=17.8
Q ss_pred CCceeEeecccCCCcceeecc
Q 000113 235 YNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 235 yN~TIFAYGQTGSGKTYTM~G 255 (2159)
.++.++..|..|||||+|+..
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~~ 34 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVITN 34 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHHH
Confidence 367788899999999999854
No 254
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=24.47 E-value=29 Score=40.68 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=13.8
Q ss_pred eeEeecccCCCcceee
Q 000113 238 CMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM 253 (2159)
.|.-.|++|||||.|+
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4667899999999997
No 255
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=24.47 E-value=20 Score=38.87 Aligned_cols=29 Identities=31% Similarity=0.652 Sum_probs=20.9
Q ss_pred chhHHHHhhc-CC--CceeEeecccCCCccee
Q 000113 224 GLPMVENCLS-GY--NSCMFAYGQTGSGKTYT 252 (2159)
Q Consensus 224 ~~PLV~~vLe-Gy--N~TIFAYGQTGSGKTYT 252 (2159)
|-|-+|.++. |+ ...+.-+|.+|+|||.-
T Consensus 15 Gi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 15 GIPGFDELIEGGFPEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp SCTTTGGGTTTSEETTCEEEEECCTTSSHHHH
T ss_pred CcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHH
Confidence 3455677775 44 45678899999999954
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=24.46 E-value=20 Score=39.06 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.2
Q ss_pred eeEeecccCCCcceee
Q 000113 238 CMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM 253 (2159)
.|.-.|++|||||.++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999886
No 257
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=24.38 E-value=3.2e+02 Score=29.46 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=18.5
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhh
Q 000113 1742 ICSLNDKLAMAYALADENEAIAVEARQELEASKLYAE 1778 (2159)
Q Consensus 1742 ~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae 1778 (2159)
+-....||+.|-.-|||++- +++..|.+-...+
T Consensus 19 l~~a~~kLeeaek~adE~eR----~~k~lE~r~~~de 51 (147)
T 2b9c_A 19 LATALQKLEEAEKAADESER----GMKVIESRAQKDE 51 (147)
T ss_dssp TTHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhhhcccH
Confidence 44556677777777777663 3444444444333
No 258
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.31 E-value=4.1e+02 Score=28.35 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000113 2036 QKLVVAAQQQTQELLAKEQIILNLRKRIEDLIE 2068 (2159)
Q Consensus 2036 ~kl~e~a~~~~~e~~~ke~e~~~Lk~q~~~lie 2068 (2159)
.++-+.......+..+++.|+..||.++-.+=.
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~ 103 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQI 103 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555556655554444333
No 259
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=24.29 E-value=35 Score=44.07 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=35.0
Q ss_pred eEeceecCCCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 204 FTFDHIACEMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 204 FtFD~VFde~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
|..-.-|.|.-.|..-+.. ++..+-.|.. ...-.|.|||||||||-.
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~-~~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEK----LVKGIQEGKK-HQTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHH----HHHHHHTTCS-EEEEEECTTSCHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHH----HHHHHhcCCC-cEEEECcCCcHHHHHHHH
Confidence 6666778899999888765 4555556642 245679999999999975
No 260
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.20 E-value=23 Score=46.86 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.7
Q ss_pred ceeEeecccCCCcceeecc
Q 000113 237 SCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G 255 (2159)
..++-.|+.|||||+|+..
T Consensus 376 ~~~lI~GppGTGKT~~i~~ 394 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSAT 394 (802)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
Confidence 4567899999999999754
No 261
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=24.07 E-value=24 Score=46.77 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.0
Q ss_pred ceeEeecccCCCcceeecc
Q 000113 237 SCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G 255 (2159)
..++-.|+.|||||+|+..
T Consensus 372 ~~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHH
Confidence 4567899999999999765
No 262
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=23.94 E-value=15 Score=39.76 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=15.5
Q ss_pred eeEeecccCCCcceeecc
Q 000113 238 CMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~G 255 (2159)
.++=||+.|||||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999999866
No 263
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=23.90 E-value=21 Score=37.37 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=13.0
Q ss_pred eeEeecccCCCccee
Q 000113 238 CMFAYGQTGSGKTYT 252 (2159)
Q Consensus 238 TIFAYGQTGSGKTYT 252 (2159)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999875
No 264
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=23.85 E-value=23 Score=43.00 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=20.7
Q ss_pred ccEEEEEeeCCCCCCHHHHHHHHHHH
Q 000113 468 SKTTIIANVSPSMCSANETLSTLKFA 493 (2159)
Q Consensus 468 SKT~MIa~VSPs~~n~eETLSTLrFA 493 (2159)
++..++.|-.|-..+..|-.+-++|.
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l 202 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFL 202 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHH
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHh
Confidence 45568888889888888888888875
No 265
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=23.80 E-value=35 Score=44.44 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=25.1
Q ss_pred CChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceeecc
Q 000113 214 ISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 214 aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM~G 255 (2159)
..++..... ++..+..+....|+=||++|+|||....+
T Consensus 183 iG~~~~i~~----l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 183 IGRSKEIQR----VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp CCCHHHHHH----HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred cCchHHHHH----HHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 344444433 33444446666788999999999987654
No 266
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=23.79 E-value=2.7e+02 Score=30.21 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=18.3
Q ss_pred HHHHhHHHHHHhHhhhhhhhHHhhhhhHhhHHHHHHHHHHhhh
Q 000113 1792 EELEHTVNALEKKVYEMNGEVERHHLIRDSLELEIQALRRRLS 1834 (2159)
Q Consensus 1792 eele~tin~LE~kV~~~k~e~~r~r~~r~~le~e~~~~~~~~~ 1834 (2159)
..|-..+.+..+....+..+..-.+--...|+.|+++|..+.+
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQ 111 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQ 111 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4444444443333333333333333333355566666654443
No 267
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=23.78 E-value=20 Score=46.70 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=16.0
Q ss_pred hhcCCCceeEeecccCCCcceee
Q 000113 231 CLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 231 vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
.++|- .|+..|+||||||+.+
T Consensus 152 ~l~rk--~vlv~apTGSGKT~~a 172 (677)
T 3rc3_A 152 AMQRK--IIFHSGPTNSGKTYHA 172 (677)
T ss_dssp TSCCE--EEEEECCTTSSHHHHH
T ss_pred hcCCC--EEEEEcCCCCCHHHHH
Confidence 34553 5789999999999843
No 268
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=23.75 E-value=22 Score=43.32 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=15.6
Q ss_pred hcCCCceeEeecccCCCcceee
Q 000113 232 LSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 232 LeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+.|.| ++..|+||||||.+.
T Consensus 6 ~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCE--EEECCCTTSSTTTTH
T ss_pred hCCCC--EEEEcCCCCCHHHHH
Confidence 44554 678899999999984
No 269
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=23.70 E-value=22 Score=45.17 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=16.5
Q ss_pred CceeEeecccCCCcceeecc
Q 000113 236 NSCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 236 N~TIFAYGQTGSGKTYTM~G 255 (2159)
+..++-.|..|||||+|+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~ 223 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKA 223 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 35677899999999999754
No 270
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=23.58 E-value=16 Score=41.39 Aligned_cols=19 Identities=26% Similarity=0.245 Sum_probs=16.4
Q ss_pred ceeEeecccCCCcceeecc
Q 000113 237 SCMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~G 255 (2159)
..++-||.+|||||..++|
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4678899999999998877
No 271
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=23.56 E-value=84 Score=30.20 Aligned_cols=50 Identities=26% Similarity=0.254 Sum_probs=33.6
Q ss_pred CchhhhHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHH
Q 000113 1042 FNVEVTENVGRAAKVCIEKDETILLLQKSLEEAQKMVVEMKEKCISLKGA 1091 (2159)
Q Consensus 1042 ~~~wIsEhV~~a~r~~iEKE~~I~~Lq~~LEdA~~m~~dme~kL~SLrgA 1091 (2159)
.+-+.+..|+...+.+-.|++.|.+|+..|.++..-..+....|.-++..
T Consensus 5 ~~~~~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 5 IPGSTSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCcchHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456688889999999999999999999999999999999888776654
No 272
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=23.55 E-value=18 Score=46.49 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=20.8
Q ss_pred ChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 215 SQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 215 SQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
-|.++|... +..| ..++..|+||||||...
T Consensus 27 ~Q~~~i~~~-------~~~~--~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 27 PQAEALKSG-------ILEG--KNALISIPTASGKTLIA 56 (720)
T ss_dssp HHHHHHTTT-------GGGT--CEEEEECCGGGCHHHHH
T ss_pred HHHHHHHHH-------hcCC--CcEEEEcCCccHHHHHH
Confidence 476666542 2344 45788999999999764
No 273
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=23.42 E-value=30 Score=47.03 Aligned_cols=43 Identities=19% Similarity=0.022 Sum_probs=33.6
Q ss_pred CCCchhhhHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000113 1040 PQFNVEVTENVGRAAKVCIEKDETILLLQKSLEEAQKMVVEMKEKC 1085 (2159)
Q Consensus 1040 P~~~~wIsEhV~~a~r~~iEKE~~I~~Lq~~LEdA~~m~~dme~kL 1085 (2159)
|-+|+|+++--.+|++.....=.-+. ..|-+|+.-|+.++.-+
T Consensus 652 ~~~R~~~~~it~~aI~~a~~~~~~~~---~~l~~a~~aR~~~D~lv 694 (1054)
T 1gku_B 652 AVKRAEFHEVTRRAILEALESLRDVD---ENLVKAQVVRRIEDRWI 694 (1054)
T ss_dssp EEEECCCSBCSHHHHHHHHTSCBCCC---HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEccCCHHHHHHHHhCCCCCc---HhHHHHHHhHHHHHHHH
Confidence 56899999998888888777644444 68889999999888643
No 274
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.41 E-value=1.5e+02 Score=27.31 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=26.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHHHHHhHHHHHHhHhhhhhh
Q 000113 1772 ASKLYAEQKEEEVKILEHSIEELEHTVNALEKKVYEMNG 1810 (2159)
Q Consensus 1772 ~~k~yae~keeevk~le~sveele~tin~LE~kV~~~k~ 1810 (2159)
-.|.|.++=+.+|+-|+.--.+|..+|+.|.++|..|+.
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777666655543
No 275
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=23.30 E-value=19 Score=38.11 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.1
Q ss_pred eeEeecccCCCcceeec
Q 000113 238 CMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~ 254 (2159)
.+.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45568999999999875
No 276
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.29 E-value=1.4e+02 Score=37.98 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=31.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 000113 1854 EDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYL 1896 (2159)
Q Consensus 1854 ~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~i 1896 (2159)
.++++|+.......++.-..+|++|+.-++++-.+|+++.--|
T Consensus 112 S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 112 SEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777788888888888877777765444
No 277
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=23.06 E-value=31 Score=37.18 Aligned_cols=17 Identities=29% Similarity=0.159 Sum_probs=14.3
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
..|.-.|.+|||||+.+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46778899999999875
No 278
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=23.04 E-value=7.7e+02 Score=26.96 Aligned_cols=79 Identities=28% Similarity=0.363 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhHHHHHh
Q 000113 1717 LCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEEVKILEHSIEELEH 1796 (2159)
Q Consensus 1717 ~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keeevk~le~sveele~ 1796 (2159)
+...+++|+-.=.+.+.--|.+..+|..|++||..|..-|++- ||||.-||.
T Consensus 54 v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~A----------------------------ERsv~kLEk 105 (155)
T 2efr_A 54 VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFA----------------------------ERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
T ss_pred HHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
Confidence 3355777777778888888999999999999998775544432 466666666
Q ss_pred HHHHHHhHhhhhhhhHHhhhhhHhhHHHHH
Q 000113 1797 TVNALEKKVYEMNGEVERHHLIRDSLELEI 1826 (2159)
Q Consensus 1797 tin~LE~kV~~~k~e~~r~r~~r~~le~e~ 1826 (2159)
+|.-||.+++. +=+.+..+++.|..-|
T Consensus 106 ~id~lEd~L~~---~Kek~~~i~~eLd~tl 132 (155)
T 2efr_A 106 SIDDLEDELYA---QKLKYKAISEEMKQLE 132 (155)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 66666654443 3344555555554433
No 279
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=22.95 E-value=29 Score=40.19 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=24.1
Q ss_pred hchhHHHHhhcC-C--CceeEeecccCCCcceeec
Q 000113 223 AGLPMVENCLSG-Y--NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 223 v~~PLV~~vLeG-y--N~TIFAYGQTGSGKTYTM~ 254 (2159)
++-|-++.++.| + ...+.-||++|||||.-..
T Consensus 82 TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 82 TSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp CSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred CCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 345778888854 3 4568999999999997653
No 280
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=22.92 E-value=1.5e+02 Score=29.98 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=41.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhh
Q 000113 1665 KSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSK 1733 (2159)
Q Consensus 1665 k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~ 1733 (2159)
...++..|+|-.++|+.||.|+-.+.++ . ..+++.-|.+-+.+|+++..
T Consensus 51 i~~ie~~ldEA~eLl~qMelE~r~~p~s-------~-------------R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 51 VRDFDEKQQEANETLAEMEEELRYAPLT-------F-------------RNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCHH-------H-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHH-------H-------------HHHHHHHHHHHHHHHHHHHh
Confidence 4568889999999999999999999877 5 77888888888888877643
No 281
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=22.89 E-value=30 Score=40.47 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=22.9
Q ss_pred chhHHHHhhcC-C--CceeEeecccCCCcceee
Q 000113 224 GLPMVENCLSG-Y--NSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 224 ~~PLV~~vLeG-y--N~TIFAYGQTGSGKTYTM 253 (2159)
+-|-++.++.| + ...+.-||++|||||..+
T Consensus 92 G~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 92 GSQALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred CchhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 45677888854 3 456888999999999765
No 282
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.75 E-value=1.1e+02 Score=28.44 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHhhHHHHHHHHhh
Q 000113 1362 QLNDKWRQAGEQLMADRASLTDEVEQLKFLIRLKEEENELLMDH 1405 (2159)
Q Consensus 1362 ~~~~~~Kq~~e~l~~Ek~~L~~evq~Lks~i~~ke~en~~L~~~ 1405 (2159)
..+.++||. +.+|+.+|++|+....-+|+|+.-|...
T Consensus 11 ~q~~kLKq~-------n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 11 RQLLRLKQM-------NVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp CHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677885 5678999999999999999998766544
No 283
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=22.66 E-value=19 Score=38.08 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=12.2
Q ss_pred eEeecccCCCcceee
Q 000113 239 MFAYGQTGSGKTYTM 253 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM 253 (2159)
|.-.|++|||||+.+
T Consensus 10 i~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 10 FIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 445699999999875
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=22.66 E-value=23 Score=36.47 Aligned_cols=15 Identities=33% Similarity=0.497 Sum_probs=13.1
Q ss_pred eeEeecccCCCccee
Q 000113 238 CMFAYGQTGSGKTYT 252 (2159)
Q Consensus 238 TIFAYGQTGSGKTYT 252 (2159)
.|+-.|..|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578899999999975
No 285
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=22.65 E-value=22 Score=37.18 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.2
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
..|+-.|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999864
No 286
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.19 E-value=3.6e+02 Score=26.87 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhhh
Q 000113 1870 EAHHRIQLLEREKEEQNEEIKRCKDYLSEV 1899 (2159)
Q Consensus 1870 ~a~~~i~~l~~~~~~k~~ei~q~k~~isel 1899 (2159)
.....|..|+.......+++..++.++-++
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566667777777777777777666554
No 287
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.13 E-value=1.3e+02 Score=30.92 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=35.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHhhhhchhhHH
Q 000113 1591 IKDETEKLFSTLSQVRQDLDRKASQLDNLLLQHEKLEASLTDTENAL 1637 (2159)
Q Consensus 1591 ~kDe~e~l~~~l~~~~~EL~~Kss~l~d~~~~~~~LE~~L~d~~~al 1637 (2159)
.||.++++-.++.++++|+.-|+.+++-+=-.+..|-.++......|
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999998888776555555555555444443
No 288
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=21.76 E-value=33 Score=37.08 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=13.5
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
-.|--.|++|||||+.+
T Consensus 23 ~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLS 39 (208)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35556799999999875
No 289
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=21.69 E-value=24 Score=41.40 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=13.7
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
..|.-.|++|||||.|+
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34555699999999997
No 290
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=21.64 E-value=22 Score=37.85 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=12.1
Q ss_pred eEeecccCCCcceee
Q 000113 239 MFAYGQTGSGKTYTM 253 (2159)
Q Consensus 239 IFAYGQTGSGKTYTM 253 (2159)
|--.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 334799999999886
No 291
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=21.50 E-value=27 Score=36.28 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=14.1
Q ss_pred ceeEeecccCCCcceee
Q 000113 237 SCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM 253 (2159)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999763
No 292
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=21.33 E-value=26 Score=39.73 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.9
Q ss_pred ceeEeecccCCCcceeec
Q 000113 237 SCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 237 ~TIFAYGQTGSGKTYTM~ 254 (2159)
..|+-||+.|+|||+.+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 589999999999998863
No 293
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=21.23 E-value=21 Score=48.73 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=14.3
Q ss_pred eeEeecccCCCcceeecc
Q 000113 238 CMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~G 255 (2159)
..+...+||||||+||+.
T Consensus 302 ~gli~~~TGSGKT~t~~~ 319 (1038)
T 2w00_A 302 GGYIWHTTGSGKTLTSFK 319 (1038)
T ss_dssp SEEEEECTTSSHHHHHHH
T ss_pred CEEEEecCCCCHHHHHHH
Confidence 355677999999999854
No 294
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=21.13 E-value=19 Score=39.68 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=15.6
Q ss_pred eeEeecccCCCcceeecc
Q 000113 238 CMFAYGQTGSGKTYTMMG 255 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~G 255 (2159)
-+|=||..|||||.++.|
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 567899999999998876
No 295
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=21.11 E-value=8.1e+02 Score=26.54 Aligned_cols=96 Identities=13% Similarity=0.174 Sum_probs=56.4
Q ss_pred HHHHhhhhccccccccccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh---hhhhhhhhhH
Q 000113 1828 ALRRRLSTVQNFSDIVDSENINAGHTEDQMSRKLQDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKD---YLSEVVLHSE 1904 (2159)
Q Consensus 1828 ~~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~---~isel~lh~e 1904 (2159)
++|++|.+.+ .+..+..-+..--+...-.+.......+..-...-...|+.|+.+...=|+.+.+ +..+..-+++
T Consensus 43 ~vrq~Ia~LP--~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e 120 (152)
T 4fla_A 43 TVRQKIASLP--QEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKE 120 (152)
T ss_dssp HHHHHHHTSC--GGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--ccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777877755 1111111111111233334444444444444455566788888777766655444 4445666678
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 000113 1905 AQASQYQQKYKTLEAMIREMQ 1925 (2159)
Q Consensus 1905 aqa~~y~~k~k~lEaM~~~~k 1925 (2159)
--+.+|++|+..+-++-.+++
T Consensus 121 ~~leeyK~Kl~rv~~vkkeL~ 141 (152)
T 4fla_A 121 KKLEEYKQKLARVTQVRKELK 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888999999998888877665
No 296
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=21.08 E-value=24 Score=41.19 Aligned_cols=17 Identities=41% Similarity=0.745 Sum_probs=14.0
Q ss_pred eeEeecccCCCcceeec
Q 000113 238 CMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~ 254 (2159)
.|.-.|++|+|||+|+.
T Consensus 107 vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 55567999999999973
No 297
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=21.04 E-value=22 Score=43.65 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=19.7
Q ss_pred hhcCCCceeEeecccCCCcceee
Q 000113 231 CLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 231 vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
++.|++-+|.-.|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 68899999999999999999765
No 298
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.93 E-value=7.1e+02 Score=31.43 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhHH----HHHHHH
Q 000113 1714 RDKLCEEVESVEEELRKVSKERDKLWVEICSLNDKLAMAYALADENEAIAVEARQELEASKLYAEQKEEE----VKILEH 1789 (2159)
Q Consensus 1714 ~~~~~~~v~~l~~~l~~~~~Erd~l~~e~~~l~~kle~a~a~a~e~eaia~ea~q~ae~~k~yae~keee----vk~le~ 1789 (2159)
+.-+...|+.|++.|..++.---....=+..+.+.|..-++.|..||.+.-+--...|-+-+|-.+|-.+ +++|-.
T Consensus 60 erdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~ 139 (491)
T 1m1j_A 60 DQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQN 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677888888888887777777888889999999999999999999988777777777776665543 466666
Q ss_pred hHHHHHhHHHHHHhHhhh
Q 000113 1790 SIEELEHTVNALEKKVYE 1807 (2159)
Q Consensus 1790 sveele~tin~LE~kV~~ 1807 (2159)
.|+.+=..|--||.-|++
T Consensus 140 ~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 140 SIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655544
No 299
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.86 E-value=1.9e+02 Score=28.91 Aligned_cols=46 Identities=28% Similarity=0.324 Sum_probs=37.5
Q ss_pred hhhhhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhh
Q 000113 1855 DQMSRKL-QDRLLQLQEAHHRIQLLEREKEEQNEEIKRCKDYLSEVV 1900 (2159)
Q Consensus 1855 ~~~~r~~-~~~~~~l~~a~~~i~~l~~~~~~k~~ei~q~k~~isel~ 1900 (2159)
..-|+.+ ..+-.+|.+|....+.|-..+..++.||..||.-..+|.
T Consensus 27 e~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 27 SQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554 456789999999999999999999999999998777763
No 300
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=20.81 E-value=34 Score=40.44 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=23.5
Q ss_pred chhHHHHhhc-CC--CceeEeecccCCCcceeec
Q 000113 224 GLPMVENCLS-GY--NSCMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 224 ~~PLV~~vLe-Gy--N~TIFAYGQTGSGKTYTM~ 254 (2159)
+-+-++.++. |+ ...+.-||++|||||..+.
T Consensus 107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4567888886 44 3457889999999998753
No 301
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=20.56 E-value=9.1e+02 Score=26.92 Aligned_cols=160 Identities=11% Similarity=0.073 Sum_probs=78.5
Q ss_pred hhhhhhHHhHhHHHHHHHHhhhcchhhhhhh----hhhhhhcchhHHHHhhhccccc-ccchhhhhhh--HHHHHHHHHH
Q 000113 1970 KDQELSAATLRIQKLEALAASRQKEVCMLNT----RLAAAESMTHDVIRDLLGVKLD-MTNYANLIDQ--EHVQKLVVAA 2042 (2159)
Q Consensus 1970 KDqEls~ArlRIeELE~laa~rQkEi~~Lna----rLAa~eSMTHDVIRdLLGVKld-mTnyA~liD~--~q~~kl~e~a 2042 (2159)
+|.+.-.+..|+..+|.....=+|++=.+-. .+.+.-.+. +.+.++.|.... ...+.++... ..+..+.+..
T Consensus 50 ~D~~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 128 (251)
T 2fic_A 50 KDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLN-ECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKL 128 (251)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999988877776643322 111111111 122234333221 1111111111 1123333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHH-----------HHHHHHHHHHHHHHHhhhhhhcc
Q 000113 2043 QQQTQELLAKEQIILNLRKRIEDLIEEHESCTSILKQREADILAAQ-----------INVEQLRERDQLLSAQNDMLKMD 2111 (2159)
Q Consensus 2043 ~~~~~e~~~ke~e~~~Lk~q~~~lieEr~s~~~ei~~k~ad~~aaq-----------i~~eqL~qrdqlL~aqnemLk~e 2111 (2159)
..+..++.. ++...=+-+...|..|+..+-+.|..++.+-..+ -+-++|++=.+-..+-|+.|+.|
T Consensus 129 ~~~vi~Pl~---~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~~e 205 (251)
T 2fic_A 129 VDQALLTMD---TYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEE 205 (251)
T ss_dssp HHHTHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 2333444566778888888887776655543322 12233444344455668888888
Q ss_pred hhhhhhHhhhh-HHHHHHHhccc
Q 000113 2112 KTNLLKRISEL-DDMVKMLIGTQ 2133 (2159)
Q Consensus 2112 ~~n~~~ki~eL-d~~vk~L~g~q 2133 (2159)
.-.+...-.++ .--+..++..|
T Consensus 206 Lp~l~~~~~~~~~~~l~~f~~~Q 228 (251)
T 2fic_A 206 LPSLWNSRVGFYVNTFQSIAGLE 228 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765433322 44444444433
No 302
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=20.54 E-value=24 Score=37.38 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.9
Q ss_pred eeEeecccCCCcceee
Q 000113 238 CMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM 253 (2159)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999875
No 303
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=20.46 E-value=29 Score=47.06 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=22.3
Q ss_pred CCCChHHHHHhhchhHHHHhhcCCCceeEeecccCCCcceee
Q 000113 212 EMISQEKLFRVAGLPMVENCLSGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 212 e~aSQEeVFe~v~~PLV~~vLeGyN~TIFAYGQTGSGKTYTM 253 (2159)
+..-|.+++.. ++.|.| ++..++||||||...
T Consensus 87 L~~~Q~eai~~--------l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 87 LDPFQDTAISC--------IDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp CCHHHHHHHHH--------HHHTCE--EEEECCTTSCHHHHH
T ss_pred CCHHHHHHHHH--------HHcCCC--EEEECCCCCChHHHH
Confidence 44457666543 355654 788999999999864
No 304
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.34 E-value=1.4e+02 Score=27.74 Aligned_cols=47 Identities=28% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhHhhhhHHHHHHHhc
Q 000113 2085 LAAQINVEQLRERDQLLSAQNDMLKMDKTNLLKRISELDDMVKMLIG 2131 (2159)
Q Consensus 2085 ~aaqi~~eqL~qrdqlL~aqnemLk~e~~n~~~ki~eLd~~vk~L~g 2131 (2159)
+||+-.=..=.++-+-|..+.+.|+.+|..|+..|..|.+++..|.+
T Consensus 12 ~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 12 MAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 305
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=20.30 E-value=23 Score=41.85 Aligned_cols=19 Identities=42% Similarity=0.545 Sum_probs=14.8
Q ss_pred cCCCceeEeecccCCCcceee
Q 000113 233 SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.|- .+.--|+||||||.++
T Consensus 170 ~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTC--CEEEEESTTSCHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHH
Confidence 454 4556799999999886
No 306
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.23 E-value=2.3e+02 Score=28.54 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=40.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHhhh
Q 000113 1665 KSEAEEHLEEQKEVITGLEKEILHRTSEDKKLLTSVESIAEDLRIVTSDRDKLCEEVESVEEELRKVSKE 1734 (2159)
Q Consensus 1665 k~~~e~~L~e~~~vie~LE~eil~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~~~~E 1734 (2159)
...++..|+|-.++|+.||.|+-.+.++ . ..+++.-|..-+.+|+++..+
T Consensus 40 i~~ie~~l~EA~ell~qMelE~r~~p~~-------~-------------R~~~~~klr~Yk~dL~~lk~e 89 (102)
T 1vcs_A 40 VANVEKQLEEARELLEQMDLEVREIPPQ-------S-------------RGMYSNRMRSYKQEMGKLETD 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTT-------T-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHH-------h-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999877 4 677777777777777665443
No 307
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=20.16 E-value=57 Score=38.11 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=13.5
Q ss_pred eeEeecccCCCcceeec
Q 000113 238 CMFAYGQTGSGKTYTMM 254 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM~ 254 (2159)
.|.-.|.+|+|||+|+.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999999873
No 308
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=20.14 E-value=23 Score=37.14 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.7
Q ss_pred eeEeecccCCCcceee
Q 000113 238 CMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 238 TIFAYGQTGSGKTYTM 253 (2159)
.|.-.|+.|||||+.+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999875
No 309
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=20.09 E-value=24 Score=42.16 Aligned_cols=19 Identities=42% Similarity=0.468 Sum_probs=14.1
Q ss_pred cCCCceeEeecccCCCcceee
Q 000113 233 SGYNSCMFAYGQTGSGKTYTM 253 (2159)
Q Consensus 233 eGyN~TIFAYGQTGSGKTYTM 253 (2159)
.|-+ |.--|+||||||+++
T Consensus 174 ~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp TTCC--EEEEESSSSCHHHHH
T ss_pred cCCE--EEEECCCCCCHHHHH
Confidence 4544 344599999999987
Done!