Query 000114
Match_columns 2158
No_of_seqs 1225 out of 7485
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 19:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0951 RNA helicase BRR2, DEA 100.0 4E-301 9E-306 2763.8 101.1 1624 166-1864 1-1626(1674)
2 KOG0952 DNA/RNA helicase MER3/ 100.0 4E-197 9E-202 1819.3 55.2 1191 418-1651 35-1229(1230)
3 KOG0952 DNA/RNA helicase MER3/ 100.0 2E-101 5E-106 961.9 52.9 800 1304-2151 76-891 (1230)
4 KOG0951 RNA helicase BRR2, DEA 100.0 8E-101 2E-105 962.5 56.1 792 1336-2151 304-1107(1674)
5 PRK02362 ski2-like helicase; P 100.0 5E-89 1.1E-93 924.6 62.4 663 1327-2036 8-706 (737)
6 PRK02362 ski2-like helicase; P 100.0 1.4E-86 3E-91 900.8 62.5 663 482-1196 8-706 (737)
7 PRK00254 ski2-like helicase; P 100.0 7E-86 1.5E-90 891.8 60.3 654 1328-2036 9-701 (720)
8 PRK00254 ski2-like helicase; P 100.0 6.2E-83 1.3E-87 863.1 62.8 658 482-1195 8-700 (720)
9 PRK01172 ski2-like helicase; P 100.0 3.2E-82 6.9E-87 853.8 60.3 641 1327-2035 8-667 (674)
10 COG1204 Superfamily II helicas 100.0 3.2E-84 6.9E-89 851.1 35.1 738 482-1258 16-764 (766)
11 PRK01172 ski2-like helicase; P 100.0 2.1E-78 4.6E-83 816.6 62.6 643 482-1195 8-667 (674)
12 COG1204 Superfamily II helicas 100.0 6E-68 1.3E-72 697.3 42.5 648 1330-2008 18-703 (766)
13 smart00611 SEC63 Domain of unk 100.0 2.9E-51 6.3E-56 504.9 36.7 307 1829-2151 2-312 (312)
14 COG1202 Superfamily II helicas 100.0 1.7E-49 3.6E-54 468.4 40.4 557 478-1136 195-829 (830)
15 PF02889 Sec63: Sec63 Brl doma 100.0 3.6E-50 7.9E-55 496.3 34.4 307 1831-2150 1-314 (314)
16 smart00611 SEC63 Domain of unk 100.0 1.5E-50 3.3E-55 498.5 30.3 308 994-1302 2-312 (312)
17 COG1202 Superfamily II helicas 100.0 4E-45 8.7E-50 431.5 41.0 545 1330-1967 203-825 (830)
18 PF02889 Sec63: Sec63 Brl doma 100.0 3.6E-47 7.8E-52 469.7 23.7 305 996-1301 1-314 (314)
19 KOG0330 ATP-dependent RNA heli 100.0 2.5E-45 5.4E-50 418.5 28.7 336 491-903 79-424 (476)
20 KOG0950 DNA polymerase theta/e 100.0 9.9E-45 2.2E-49 455.4 33.9 658 481-1181 206-934 (1008)
21 PRK13767 ATP-dependent helicas 100.0 1.1E-42 2.3E-47 475.1 43.3 413 480-944 16-460 (876)
22 COG1201 Lhr Lhr-like helicases 100.0 2E-42 4.4E-47 447.3 36.8 450 479-1013 5-471 (814)
23 PRK13767 ATP-dependent helicas 100.0 8.2E-42 1.8E-46 466.5 43.5 423 1330-1818 20-475 (876)
24 KOG4434 Molecular chaperone SE 100.0 9.2E-43 2E-47 389.4 24.6 300 1855-2156 7-483 (520)
25 KOG0331 ATP-dependent RNA heli 100.0 4.3E-42 9.3E-47 422.0 31.8 335 491-893 109-452 (519)
26 TIGR03817 DECH_helic helicase/ 100.0 9.5E-42 2.1E-46 456.8 38.0 354 481-892 20-389 (742)
27 COG1201 Lhr Lhr-like helicases 100.0 9.8E-41 2.1E-45 431.8 39.5 441 1330-1848 10-471 (814)
28 KOG0338 ATP-dependent RNA heli 100.0 7.8E-42 1.7E-46 399.4 25.3 347 491-908 199-552 (691)
29 KOG0947 Cytoplasmic exosomal R 100.0 4.4E-41 9.5E-46 416.5 33.3 403 495-939 297-771 (1248)
30 KOG0330 ATP-dependent RNA heli 100.0 2.5E-41 5.4E-46 386.0 28.2 341 1326-1736 67-415 (476)
31 TIGR03817 DECH_helic helicase/ 100.0 3E-40 6.5E-45 442.4 42.7 352 1327-1728 21-386 (742)
32 PLN00206 DEAD-box ATP-dependen 100.0 1.8E-40 4E-45 432.8 38.0 346 481-896 127-482 (518)
33 PRK10590 ATP-dependent RNA hel 100.0 1.5E-40 3.4E-45 428.9 35.3 345 481-895 7-358 (456)
34 PRK04837 ATP-dependent RNA hel 100.0 1.9E-40 4E-45 425.8 34.8 346 482-895 15-368 (423)
35 PTZ00110 helicase; Provisional 100.0 2.5E-40 5.3E-45 432.3 36.1 343 481-895 136-490 (545)
36 PRK11776 ATP-dependent RNA hel 100.0 3.6E-40 7.9E-45 427.7 36.3 336 482-894 11-354 (460)
37 PRK04537 ATP-dependent RNA hel 100.0 5.6E-40 1.2E-44 430.0 36.5 345 482-893 16-368 (572)
38 PLN00206 DEAD-box ATP-dependen 100.0 7.3E-40 1.6E-44 427.2 37.1 347 1326-1737 127-484 (518)
39 KOG0331 ATP-dependent RNA heli 100.0 3E-40 6.4E-45 405.8 30.6 337 1329-1731 100-451 (519)
40 PRK09751 putative ATP-dependen 100.0 1.9E-39 4.1E-44 444.5 41.0 400 1362-1783 1-447 (1490)
41 PRK09751 putative ATP-dependen 100.0 1.3E-39 2.9E-44 446.0 38.4 401 516-941 1-444 (1490)
42 PRK10590 ATP-dependent RNA hel 100.0 1.3E-39 2.9E-44 420.3 36.1 342 1327-1734 8-358 (456)
43 COG0513 SrmB Superfamily II DN 100.0 9.2E-40 2E-44 422.7 34.0 340 482-896 36-388 (513)
44 PRK11192 ATP-dependent RNA hel 100.0 1.9E-39 4.1E-44 418.6 36.7 342 481-895 7-358 (434)
45 KOG0342 ATP-dependent RNA heli 100.0 7.4E-40 1.6E-44 385.4 28.7 345 482-898 89-446 (543)
46 PLN03137 ATP-dependent DNA hel 100.0 7.4E-39 1.6E-43 419.7 41.0 364 454-901 404-799 (1195)
47 KOG0333 U5 snRNP-like RNA heli 100.0 7.7E-40 1.7E-44 384.8 28.3 342 491-895 263-630 (673)
48 KOG0947 Cytoplasmic exosomal R 100.0 1.3E-39 2.8E-44 403.6 30.2 399 1341-1778 297-771 (1248)
49 PTZ00110 helicase; Provisional 100.0 6.6E-39 1.4E-43 418.9 38.2 344 1326-1734 136-490 (545)
50 PRK11776 ATP-dependent RNA hel 100.0 5.8E-39 1.3E-43 416.4 37.5 338 1327-1732 11-353 (460)
51 PRK04837 ATP-dependent RNA hel 100.0 4.1E-39 8.9E-44 413.4 35.3 341 1326-1734 14-368 (423)
52 KOG0338 ATP-dependent RNA heli 100.0 4.8E-40 1E-44 384.5 24.0 358 1326-1747 187-552 (691)
53 PRK01297 ATP-dependent RNA hel 100.0 9.3E-39 2E-43 415.4 37.0 344 481-892 93-445 (475)
54 PRK11634 ATP-dependent RNA hel 100.0 6.3E-39 1.4E-43 421.6 35.6 336 482-895 13-358 (629)
55 KOG0948 Nuclear exosomal RNA h 100.0 2.8E-40 6.1E-45 400.0 20.9 392 495-923 129-575 (1041)
56 PRK04537 ATP-dependent RNA hel 100.0 1.1E-38 2.3E-43 418.0 37.1 337 1327-1729 16-365 (572)
57 KOG0345 ATP-dependent RNA heli 100.0 1.1E-38 2.3E-43 372.2 32.4 345 482-895 13-370 (567)
58 KOG0348 ATP-dependent RNA heli 100.0 4.7E-39 1E-43 378.4 29.7 370 491-900 155-564 (708)
59 PTZ00424 helicase 45; Provisio 100.0 7.8E-39 1.7E-43 410.1 34.6 338 482-896 35-381 (401)
60 PTZ00424 helicase 45; Provisio 100.0 1.7E-38 3.7E-43 406.9 36.2 344 1326-1736 34-382 (401)
61 KOG0340 ATP-dependent RNA heli 100.0 4.2E-39 9E-44 363.7 25.3 343 479-895 11-367 (442)
62 KOG0343 RNA Helicase [RNA proc 100.0 5.1E-39 1.1E-43 378.8 26.6 345 491-906 87-440 (758)
63 COG0513 SrmB Superfamily II DN 100.0 2.2E-38 4.8E-43 409.9 35.1 340 1327-1734 36-387 (513)
64 KOG0326 ATP-dependent RNA heli 100.0 7.9E-40 1.7E-44 362.9 18.2 332 483-892 94-432 (459)
65 PRK11192 ATP-dependent RNA hel 100.0 5.5E-38 1.2E-42 404.9 38.0 342 1327-1734 8-358 (434)
66 PRK11634 ATP-dependent RNA hel 100.0 6.8E-38 1.5E-42 411.9 37.9 342 1327-1735 13-359 (629)
67 PRK01297 ATP-dependent RNA hel 100.0 9.1E-38 2E-42 406.1 37.2 336 1327-1729 94-443 (475)
68 KOG0342 ATP-dependent RNA heli 100.0 4.1E-38 8.8E-43 370.8 30.0 350 1327-1736 89-445 (543)
69 KOG0328 Predicted ATP-dependen 100.0 9.3E-39 2E-43 349.3 22.7 335 485-896 38-380 (400)
70 KOG0950 DNA polymerase theta/e 100.0 1.7E-37 3.8E-42 390.4 35.1 650 1338-2020 220-934 (1008)
71 KOG0345 ATP-dependent RNA heli 100.0 1E-37 2.3E-42 363.9 30.6 348 1327-1738 13-373 (567)
72 PLN03137 ATP-dependent DNA hel 100.0 1.6E-37 3.4E-42 407.3 34.2 336 1330-1740 450-799 (1195)
73 TIGR00614 recQ_fam ATP-depende 100.0 4.8E-37 1E-41 397.6 37.6 333 1332-1739 3-344 (470)
74 KOG0948 Nuclear exosomal RNA h 100.0 3.1E-38 6.7E-43 382.4 24.6 388 1341-1762 129-575 (1041)
75 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-37 2.4E-42 367.6 27.1 351 1331-1745 80-440 (758)
76 COG4581 Superfamily II RNA hel 100.0 2.8E-37 6E-42 403.4 32.1 409 495-940 119-587 (1041)
77 KOG0328 Predicted ATP-dependen 100.0 1.5E-37 3.3E-42 339.8 24.6 351 1318-1735 25-380 (400)
78 TIGR00614 recQ_fam ATP-depende 100.0 5.1E-37 1.1E-41 397.3 33.7 328 491-899 7-343 (470)
79 KOG0340 ATP-dependent RNA heli 100.0 2.4E-37 5.2E-42 349.5 25.9 345 1321-1734 8-367 (442)
80 KOG0333 U5 snRNP-like RNA heli 100.0 5E-37 1.1E-41 361.2 27.9 361 1325-1747 250-650 (673)
81 KOG0347 RNA helicase [RNA proc 100.0 4.7E-38 1E-42 371.0 16.7 381 482-924 188-615 (731)
82 KOG0335 ATP-dependent RNA heli 100.0 3.9E-37 8.4E-42 371.4 24.5 337 491-890 92-445 (482)
83 KOG0326 ATP-dependent RNA heli 100.0 3.7E-37 8.1E-42 341.7 19.0 354 1325-1749 90-454 (459)
84 COG4581 Superfamily II RNA hel 100.0 6.2E-36 1.3E-40 390.8 32.5 405 1341-1779 119-587 (1041)
85 KOG0348 ATP-dependent RNA heli 100.0 4.9E-36 1.1E-40 353.1 27.6 367 1338-1738 156-563 (708)
86 PRK11057 ATP-dependent DNA hel 100.0 3.9E-35 8.3E-40 388.9 37.5 338 1324-1740 9-355 (607)
87 TIGR01389 recQ ATP-dependent D 100.0 2.4E-35 5.2E-40 392.8 35.5 335 1331-1744 4-347 (591)
88 KOG0332 ATP-dependent RNA heli 100.0 8.5E-36 1.8E-40 338.5 26.4 341 483-890 99-444 (477)
89 PRK11057 ATP-dependent DNA hel 100.0 3.1E-35 6.7E-40 389.8 35.7 321 491-901 21-355 (607)
90 KOG0336 ATP-dependent RNA heli 100.0 4.4E-36 9.5E-41 341.9 22.5 337 491-897 238-580 (629)
91 TIGR01389 recQ ATP-dependent D 100.0 4.8E-35 1E-39 389.9 33.3 327 491-904 9-346 (591)
92 KOG0350 DEAD-box ATP-dependent 100.0 2.8E-35 6E-40 345.3 24.8 345 491-899 155-550 (620)
93 KOG0347 RNA helicase [RNA proc 100.0 7E-36 1.5E-40 352.7 18.3 387 1326-1766 187-618 (731)
94 KOG0332 ATP-dependent RNA heli 100.0 2.1E-34 4.5E-39 327.2 27.7 378 1312-1763 82-464 (477)
95 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.7E-34 5.9E-39 383.4 33.4 420 504-1035 10-440 (819)
96 KOG0335 ATP-dependent RNA heli 100.0 1.4E-34 3E-39 349.3 24.1 364 1295-1729 58-445 (482)
97 PRK11664 ATP-dependent RNA hel 100.0 6E-34 1.3E-38 381.4 32.2 410 504-1022 13-431 (812)
98 KOG0350 DEAD-box ATP-dependent 100.0 6.7E-34 1.5E-38 333.7 26.3 351 1338-1739 156-551 (620)
99 KOG0346 RNA helicase [RNA proc 100.0 7.7E-34 1.7E-38 328.2 26.3 341 482-892 26-413 (569)
100 KOG0339 ATP-dependent RNA heli 100.0 4.8E-34 1E-38 333.4 24.2 335 491-896 241-582 (731)
101 KOG0341 DEAD-box protein abstr 100.0 7.3E-35 1.6E-39 329.7 16.6 335 482-890 177-529 (610)
102 KOG0336 ATP-dependent RNA heli 100.0 4.9E-34 1.1E-38 325.3 23.0 343 1330-1737 230-581 (629)
103 COG0514 RecQ Superfamily II DN 100.0 4.9E-33 1.1E-37 348.8 33.3 337 1330-1746 7-355 (590)
104 TIGR00580 mfd transcription-re 100.0 1.5E-32 3.2E-37 370.1 36.3 310 492-889 449-770 (926)
105 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.7E-32 5.9E-37 364.2 38.0 415 1354-1869 14-439 (819)
106 KOG0339 ATP-dependent RNA heli 100.0 8.2E-33 1.8E-37 323.2 27.9 344 1327-1738 230-585 (731)
107 KOG4284 DEAD box protein [Tran 100.0 8.6E-34 1.9E-38 338.6 18.5 330 491-890 43-380 (980)
108 PRK11664 ATP-dependent RNA hel 100.0 1.1E-31 2.4E-36 359.7 39.5 406 1350-1856 14-430 (812)
109 KOG0344 ATP-dependent RNA heli 100.0 5.9E-33 1.3E-37 335.5 23.9 339 491-895 154-501 (593)
110 KOG0334 RNA helicase [RNA proc 100.0 1.2E-32 2.5E-37 352.6 27.1 364 491-923 383-757 (997)
111 TIGR00580 mfd transcription-re 100.0 3.4E-31 7.4E-36 356.9 42.4 314 1332-1728 444-770 (926)
112 PRK10917 ATP-dependent DNA hel 100.0 4.3E-32 9.2E-37 363.3 33.2 309 492-888 259-588 (681)
113 PRK11131 ATP-dependent RNA hel 100.0 4.7E-32 1E-36 365.5 33.6 438 503-1052 81-536 (1294)
114 TIGR00643 recG ATP-dependent D 100.0 4.8E-32 1E-36 360.9 33.0 312 492-888 233-565 (630)
115 KOG0346 RNA helicase [RNA proc 100.0 4.2E-32 9E-37 314.0 25.6 339 1326-1729 25-411 (569)
116 KOG0341 DEAD-box protein abstr 100.0 1E-33 2.2E-38 320.5 10.5 387 1266-1730 124-530 (610)
117 PRK10689 transcription-repair 100.0 3.3E-31 7.1E-36 364.4 36.4 308 495-889 600-919 (1147)
118 PRK10917 ATP-dependent DNA hel 100.0 7.3E-31 1.6E-35 351.4 36.4 315 1341-1728 261-589 (681)
119 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.3E-31 7.1E-36 359.2 33.1 441 502-1051 73-526 (1283)
120 KOG4284 DEAD box protein [Tran 100.0 6.3E-32 1.4E-36 322.8 20.7 344 1327-1730 32-381 (980)
121 TIGR00643 recG ATP-dependent D 100.0 1.9E-30 4.2E-35 345.6 37.4 320 1338-1728 233-566 (630)
122 KOG0344 ATP-dependent RNA heli 100.0 1.3E-31 2.9E-36 323.9 23.7 341 1330-1734 146-501 (593)
123 PRK10689 transcription-repair 100.0 1.7E-30 3.7E-35 357.3 36.3 308 1339-1728 599-919 (1147)
124 COG0514 RecQ Superfamily II DN 100.0 7.1E-31 1.5E-35 329.4 29.4 327 486-903 9-351 (590)
125 KOG0334 RNA helicase [RNA proc 100.0 3.2E-31 6.9E-36 339.5 25.5 375 1324-1762 369-757 (997)
126 COG1205 Distinct helicase fami 100.0 1.2E-30 2.5E-35 349.9 30.6 348 491-892 66-425 (851)
127 PHA02653 RNA helicase NPH-II; 100.0 5.9E-30 1.3E-34 334.2 34.2 327 498-890 167-515 (675)
128 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.5E-30 9.7E-35 335.1 32.4 321 491-885 12-388 (844)
129 COG1111 MPH1 ERCC4-like helica 100.0 1.1E-29 2.4E-34 302.7 32.8 339 491-895 11-489 (542)
130 KOG0337 ATP-dependent RNA heli 100.0 2.3E-31 4.9E-36 306.9 15.7 336 487-897 34-376 (529)
131 TIGR03158 cas3_cyano CRISPR-as 100.0 8.2E-30 1.8E-34 317.6 31.0 301 499-872 1-357 (357)
132 KOG0327 Translation initiation 100.0 2E-30 4.3E-35 299.8 22.9 342 1325-1736 31-378 (397)
133 COG1205 Distinct helicase fami 100.0 7.4E-30 1.6E-34 342.2 30.9 359 1332-1734 60-429 (851)
134 KOG0327 Translation initiation 100.0 1.9E-30 4E-35 300.0 20.1 331 486-896 38-377 (397)
135 TIGR03158 cas3_cyano CRISPR-as 100.0 1.4E-29 3.1E-34 315.4 29.3 301 1345-1711 1-357 (357)
136 PRK11131 ATP-dependent RNA hel 100.0 1E-28 2.3E-33 333.4 39.7 441 1349-1885 81-534 (1294)
137 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.3E-29 7.2E-34 327.0 32.9 325 1332-1726 4-390 (844)
138 TIGR01587 cas3_core CRISPR-ass 100.0 1.4E-29 3E-34 319.4 28.4 302 514-890 2-337 (358)
139 KOG0337 ATP-dependent RNA heli 100.0 2E-30 4.2E-35 299.2 14.6 344 1322-1734 23-374 (529)
140 TIGR01587 cas3_core CRISPR-ass 100.0 7.3E-29 1.6E-33 312.8 28.3 304 1360-1729 2-337 (358)
141 COG1111 MPH1 ERCC4-like helica 100.0 2E-28 4.3E-33 292.1 30.1 338 1337-1728 11-481 (542)
142 TIGR01967 DEAH_box_HrpA ATP-de 100.0 6.6E-28 1.4E-32 327.3 38.5 448 1339-1884 62-524 (1283)
143 KOG0922 DEAH-box RNA helicase 100.0 3E-28 6.5E-33 299.5 30.4 441 506-1052 61-511 (674)
144 PHA02653 RNA helicase NPH-II; 100.0 1.8E-27 3.9E-32 311.0 35.8 328 1344-1729 167-515 (675)
145 KOG0351 ATP-dependent DNA heli 100.0 1.9E-28 4.1E-33 324.6 25.3 330 1338-1740 261-604 (941)
146 PHA02558 uvsW UvsW helicase; P 100.0 7.8E-28 1.7E-32 313.2 29.1 310 494-885 113-449 (501)
147 KOG0354 DEAD-box like helicase 100.0 7.6E-28 1.7E-32 304.1 27.3 343 491-893 58-533 (746)
148 COG1643 HrpA HrpA-like helicas 100.0 8E-28 1.7E-32 315.0 28.4 427 503-1037 57-494 (845)
149 KOG0352 ATP-dependent DNA heli 100.0 2.5E-28 5.5E-33 280.4 19.7 328 1330-1734 9-368 (641)
150 KOG0923 mRNA splicing factor A 100.0 2.5E-27 5.3E-32 285.5 27.2 476 499-1087 269-756 (902)
151 KOG0924 mRNA splicing factor A 100.0 5.9E-27 1.3E-31 281.7 26.6 452 499-1056 360-822 (1042)
152 KOG0352 ATP-dependent DNA heli 100.0 9.3E-28 2E-32 275.9 18.7 332 487-897 12-370 (641)
153 KOG0922 DEAH-box RNA helicase 100.0 4.5E-26 9.7E-31 280.5 33.5 435 1355-1884 64-508 (674)
154 PHA02558 uvsW UvsW helicase; P 99.9 1.3E-26 2.9E-31 301.6 29.0 313 1340-1724 113-449 (501)
155 KOG0949 Predicted helicase, DE 99.9 6.2E-27 1.4E-31 291.6 23.4 366 495-888 511-1047(1330)
156 PRK05580 primosome assembly pr 99.9 1.3E-26 2.7E-31 309.2 27.3 370 495-895 144-555 (679)
157 KOG0923 mRNA splicing factor A 99.9 4.5E-26 9.7E-31 274.7 29.0 446 1344-1886 268-727 (902)
158 KOG0353 ATP-dependent DNA heli 99.9 8.8E-27 1.9E-31 262.9 20.7 339 1318-1728 72-467 (695)
159 PRK05580 primosome assembly pr 99.9 8.7E-26 1.9E-30 301.1 30.2 399 1340-1795 143-587 (679)
160 PRK14701 reverse gyrase; Provi 99.9 2.8E-26 6.1E-31 321.9 26.4 328 491-900 76-467 (1638)
161 PRK13766 Hef nuclease; Provisi 99.9 5.5E-25 1.2E-29 303.8 36.8 336 492-890 12-480 (773)
162 PRK09401 reverse gyrase; Revie 99.9 7.7E-26 1.7E-30 312.3 28.0 304 492-873 78-430 (1176)
163 KOG0354 DEAD-box like helicase 99.9 2E-25 4.3E-30 282.4 28.5 341 1336-1728 57-529 (746)
164 KOG0351 ATP-dependent DNA heli 99.9 5.2E-26 1.1E-30 301.6 23.3 328 491-901 260-604 (941)
165 TIGR00603 rad25 DNA repair hel 99.9 4.6E-25 9.9E-30 286.2 31.0 323 494-894 254-612 (732)
166 COG1643 HrpA HrpA-like helicas 99.9 6.4E-25 1.4E-29 287.8 31.0 424 1350-1870 58-492 (845)
167 KOG0949 Predicted helicase, DE 99.9 1.9E-25 4.1E-30 278.6 23.4 366 1341-1728 511-1048(1330)
168 PRK12898 secA preprotein trans 99.9 1.4E-24 3.1E-29 278.6 32.0 319 495-890 103-587 (656)
169 PRK14701 reverse gyrase; Provi 99.9 2.8E-25 6.1E-30 311.9 27.4 336 1331-1740 67-468 (1638)
170 PRK13766 Hef nuclease; Provisi 99.9 2.7E-24 5.9E-29 296.9 36.7 328 1339-1729 13-480 (773)
171 PRK09200 preprotein translocas 99.9 1.7E-24 3.7E-29 283.5 31.9 324 492-890 76-542 (790)
172 TIGR00595 priA primosomal prot 99.9 1.8E-25 4E-30 287.9 21.9 345 515-894 1-386 (505)
173 TIGR03714 secA2 accessory Sec 99.9 2.8E-24 6.1E-29 278.5 32.6 345 496-915 69-579 (762)
174 KOG0329 ATP-dependent RNA heli 99.9 5.4E-26 1.2E-30 245.9 11.9 300 483-895 51-361 (387)
175 KOG0353 ATP-dependent DNA heli 99.9 6E-25 1.3E-29 248.1 20.2 326 485-892 85-470 (695)
176 PRK09401 reverse gyrase; Revie 99.9 1.8E-24 3.9E-29 298.8 29.2 303 1330-1712 67-430 (1176)
177 TIGR00603 rad25 DNA repair hel 99.9 3.8E-24 8.2E-29 277.7 30.1 315 1340-1729 254-608 (732)
178 TIGR00595 priA primosomal prot 99.9 3E-24 6.6E-29 276.7 28.0 375 1361-1795 1-419 (505)
179 KOG0924 mRNA splicing factor A 99.9 6E-23 1.3E-27 247.6 34.2 451 1345-1890 360-821 (1042)
180 TIGR00963 secA preprotein tran 99.9 1.8E-23 3.9E-28 269.1 30.8 323 495-890 56-518 (745)
181 PRK12898 secA preprotein trans 99.9 1.8E-23 4E-28 268.4 30.6 328 1341-1736 103-593 (656)
182 TIGR01054 rgy reverse gyrase. 99.9 1.2E-23 2.7E-28 291.1 29.8 284 493-853 76-409 (1171)
183 PRK09694 helicase Cas3; Provis 99.9 6.5E-23 1.4E-27 274.0 34.5 314 493-876 284-664 (878)
184 KOG0926 DEAH-box RNA helicase 99.9 8E-24 1.7E-28 259.1 22.5 456 502-1023 263-798 (1172)
185 KOG0329 ATP-dependent RNA heli 99.9 1.5E-24 3.2E-29 234.8 14.3 304 1327-1731 49-358 (387)
186 TIGR03714 secA2 accessory Sec 99.9 3.9E-23 8.5E-28 268.0 30.3 324 1340-1729 67-538 (762)
187 COG1200 RecG RecG-like helicas 99.9 5.5E-23 1.2E-27 256.6 30.4 316 1341-1729 262-592 (677)
188 PRK09200 preprotein translocas 99.9 4.6E-23 1E-27 270.2 31.0 325 1341-1729 78-542 (790)
189 COG1200 RecG RecG-like helicas 99.9 2.5E-23 5.3E-28 259.7 26.9 315 495-890 262-592 (677)
190 PRK09694 helicase Cas3; Provis 99.9 6.8E-23 1.5E-27 273.8 32.7 316 1339-1715 284-664 (878)
191 KOG0920 ATP-dependent RNA heli 99.9 3E-23 6.6E-28 269.9 27.8 420 500-1018 177-635 (924)
192 TIGR00963 secA preprotein tran 99.9 2.3E-22 5E-27 259.0 30.6 322 1341-1729 56-518 (745)
193 COG4098 comFA Superfamily II D 99.9 2.4E-21 5.3E-26 219.6 29.1 316 1340-1732 96-420 (441)
194 TIGR01054 rgy reverse gyrase. 99.9 5.7E-22 1.2E-26 274.7 29.0 288 1330-1682 65-403 (1171)
195 KOG0925 mRNA splicing factor A 99.9 1.8E-21 3.9E-26 228.0 25.3 444 500-1052 51-509 (699)
196 COG1061 SSL2 DNA or RNA helica 99.9 7.4E-22 1.6E-26 252.1 24.2 297 493-874 34-376 (442)
197 KOG0349 Putative DEAD-box RNA 99.9 1.5E-22 3.3E-27 232.8 15.7 289 548-888 284-614 (725)
198 COG1197 Mfd Transcription-repa 99.9 6.4E-21 1.4E-25 250.3 32.4 312 1338-1729 590-914 (1139)
199 COG4098 comFA Superfamily II D 99.9 6.6E-21 1.4E-25 216.2 27.8 312 495-887 97-414 (441)
200 KOG0920 ATP-dependent RNA heli 99.9 4.6E-21 9.9E-26 249.8 29.3 431 1344-1859 176-641 (924)
201 COG1061 SSL2 DNA or RNA helica 99.9 7.6E-21 1.7E-25 242.8 29.4 299 1339-1713 34-376 (442)
202 COG1197 Mfd Transcription-repa 99.9 1.6E-20 3.5E-25 246.6 29.8 316 486-890 583-914 (1139)
203 COG1198 PriA Primosomal protei 99.9 1.6E-20 3.4E-25 243.5 26.1 372 493-897 196-611 (730)
204 KOG0926 DEAH-box RNA helicase 99.9 1.7E-20 3.8E-25 230.2 23.7 445 1348-1857 263-797 (1172)
205 KOG0349 Putative DEAD-box RNA 99.9 1E-21 2.2E-26 225.9 12.3 291 1391-1734 287-622 (725)
206 PRK11448 hsdR type I restricti 99.8 1.5E-19 3.3E-24 248.7 30.6 335 494-885 412-812 (1123)
207 COG1198 PriA Primosomal protei 99.8 1.8E-19 4E-24 233.7 28.9 396 1339-1795 196-641 (730)
208 PRK04914 ATP-dependent helicas 99.8 7.2E-19 1.6E-23 236.7 35.2 319 495-885 152-599 (956)
209 PRK13104 secA preprotein trans 99.8 4.9E-19 1.1E-23 231.1 28.5 127 495-635 82-214 (896)
210 PRK11448 hsdR type I restricti 99.8 6.6E-19 1.4E-23 242.6 31.3 339 1340-1727 412-815 (1123)
211 cd00268 DEADc DEAD-box helicas 99.8 1.5E-19 3.3E-24 209.3 20.8 184 482-683 6-195 (203)
212 KOG0925 mRNA splicing factor A 99.8 1.7E-18 3.7E-23 203.3 28.9 438 1332-1870 36-492 (699)
213 PRK04914 ATP-dependent helicas 99.8 6E-18 1.3E-22 227.9 36.0 342 1340-1739 151-617 (956)
214 PRK12906 secA preprotein trans 99.8 1.9E-18 4.1E-23 225.1 28.7 352 495-915 80-592 (796)
215 cd00268 DEADc DEAD-box helicas 99.8 7.8E-19 1.7E-23 203.4 20.9 176 1328-1513 7-186 (203)
216 COG1203 CRISPR-associated heli 99.8 1.1E-18 2.3E-23 235.7 23.6 328 495-890 195-551 (733)
217 PRK13104 secA preprotein trans 99.8 6.6E-18 1.4E-22 220.7 28.5 128 1342-1477 81-215 (896)
218 PF00270 DEAD: DEAD/DEAH box h 99.8 7.6E-19 1.7E-23 197.1 16.8 158 497-671 1-163 (169)
219 PRK12904 preprotein translocas 99.8 1.7E-17 3.6E-22 217.2 28.4 126 495-635 81-213 (830)
220 COG1203 CRISPR-associated heli 99.8 4.1E-18 8.9E-23 230.1 23.6 327 1342-1729 196-551 (733)
221 PF00270 DEAD: DEAD/DEAH box h 99.8 2.8E-18 6E-23 192.6 17.5 158 1343-1512 1-163 (169)
222 COG5407 SEC63 Preprotein trans 99.8 3.2E-18 7E-23 198.6 17.0 280 1842-2152 226-547 (610)
223 PRK12899 secA preprotein trans 99.8 1.5E-16 3.2E-21 207.2 33.1 132 492-635 86-227 (970)
224 PRK12906 secA preprotein trans 99.8 2.7E-17 5.8E-22 214.4 26.2 348 1341-1753 80-591 (796)
225 PRK12904 preprotein translocas 99.8 2.9E-17 6.2E-22 215.0 26.5 128 1341-1477 81-214 (830)
226 PRK12899 secA preprotein trans 99.7 3.8E-16 8.3E-21 203.4 30.8 144 1327-1477 69-228 (970)
227 PRK13107 preprotein translocas 99.7 1.1E-16 2.4E-21 208.4 25.7 128 495-636 82-215 (908)
228 KOG4434 Molecular chaperone SE 99.7 2.2E-16 4.7E-21 178.7 19.7 279 1021-1301 8-477 (520)
229 TIGR01407 dinG_rel DnaQ family 99.7 2.3E-15 5E-20 208.0 32.3 134 733-903 674-829 (850)
230 PRK13107 preprotein translocas 99.7 7E-16 1.5E-20 201.1 25.2 112 1360-1477 98-215 (908)
231 TIGR01407 dinG_rel DnaQ family 99.7 5.1E-15 1.1E-19 204.6 32.1 205 1502-1742 596-829 (850)
232 KOG4150 Predicted ATP-dependen 99.7 5.7E-16 1.2E-20 183.9 17.0 363 1330-1734 273-647 (1034)
233 TIGR00348 hsdR type I site-spe 99.7 6E-15 1.3E-19 197.6 26.9 347 496-889 239-649 (667)
234 COG4096 HsdR Type I site-speci 99.6 1.1E-14 2.5E-19 184.4 23.0 312 493-875 163-526 (875)
235 TIGR00348 hsdR type I site-spe 99.6 1.7E-14 3.7E-19 193.3 26.0 349 1341-1728 238-649 (667)
236 TIGR00631 uvrb excinuclease AB 99.6 8.7E-14 1.9E-18 184.0 30.4 126 1562-1730 430-555 (655)
237 COG4096 HsdR Type I site-speci 99.6 4E-14 8.6E-19 179.5 22.5 311 1340-1714 164-526 (875)
238 KOG4150 Predicted ATP-dependen 99.6 2.9E-14 6.2E-19 169.7 19.6 347 484-888 273-639 (1034)
239 KOG0953 Mitochondrial RNA heli 99.6 2E-14 4.3E-19 172.9 18.1 289 1360-1739 194-487 (700)
240 PLN03142 Probable chromatin-re 99.6 1.3E-13 2.7E-18 187.0 27.9 324 495-890 169-600 (1033)
241 KOG0953 Mitochondrial RNA heli 99.6 1.8E-14 3.8E-19 173.3 16.7 289 514-900 194-487 (700)
242 PLN03142 Probable chromatin-re 99.6 4E-13 8.6E-18 182.2 29.2 323 1341-1729 169-600 (1033)
243 PRK07246 bifunctional ATP-depe 99.6 7.5E-13 1.6E-17 180.3 31.7 83 491-586 242-328 (820)
244 PRK14873 primosome assembly pr 99.5 3.9E-14 8.4E-19 186.6 16.6 329 518-888 167-538 (665)
245 PRK05298 excinuclease ABC subu 99.5 9.6E-13 2.1E-17 175.9 29.7 124 1562-1728 434-557 (652)
246 TIGR00631 uvrb excinuclease AB 99.5 9.6E-13 2.1E-17 174.2 28.9 115 732-891 441-555 (655)
247 PRK07246 bifunctional ATP-depe 99.5 1.8E-12 3.8E-17 176.7 32.1 347 1341-1738 245-795 (820)
248 PRK12900 secA preprotein trans 99.5 8E-13 1.7E-17 173.2 26.4 133 731-914 596-748 (1025)
249 PRK08074 bifunctional ATP-depe 99.5 5.2E-12 1.1E-16 175.4 35.1 135 733-903 752-908 (928)
250 smart00487 DEXDc DEAD-like hel 99.5 3.6E-13 7.8E-18 154.7 19.4 169 1338-1518 5-177 (201)
251 smart00487 DEXDc DEAD-like hel 99.5 2.8E-13 6E-18 155.6 17.2 164 492-673 5-173 (201)
252 COG0556 UvrB Helicase subunit 99.5 3.2E-12 7E-17 154.0 25.4 170 660-888 386-556 (663)
253 COG1110 Reverse gyrase [DNA re 99.5 2.1E-12 4.6E-17 165.8 23.9 281 492-853 80-417 (1187)
254 COG1110 Reverse gyrase [DNA re 99.5 8.1E-12 1.8E-16 160.6 28.4 288 1330-1687 69-417 (1187)
255 COG0556 UvrB Helicase subunit 99.5 9.1E-12 2E-16 150.2 26.5 125 1562-1729 434-558 (663)
256 PRK12326 preprotein translocas 99.5 1.2E-11 2.5E-16 158.5 28.2 127 495-635 78-210 (764)
257 PRK14873 primosome assembly pr 99.4 1.4E-11 2.9E-16 162.8 26.0 359 1363-1796 166-577 (665)
258 PRK12326 preprotein translocas 99.4 5.6E-11 1.2E-15 152.3 29.4 128 1341-1477 78-211 (764)
259 PRK12900 secA preprotein trans 99.4 1.2E-11 2.6E-16 162.4 23.6 132 1572-1752 596-747 (1025)
260 PRK08074 bifunctional ATP-depe 99.4 4.1E-11 8.9E-16 166.6 30.4 136 1573-1742 751-908 (928)
261 PRK13103 secA preprotein trans 99.4 3.7E-11 8E-16 157.7 27.6 127 495-635 82-214 (913)
262 KOG1123 RNA polymerase II tran 99.4 1E-12 2.2E-17 155.6 11.9 366 443-896 257-660 (776)
263 KOG1123 RNA polymerase II tran 99.4 4.1E-12 8.8E-17 150.5 16.2 298 1339-1713 300-634 (776)
264 cd00046 DEXDc DEAD-like helica 99.3 1.6E-11 3.5E-16 132.4 15.0 140 513-670 2-144 (144)
265 PF04851 ResIII: Type III rest 99.3 8.3E-12 1.8E-16 142.0 13.0 151 1341-1512 3-183 (184)
266 PF04851 ResIII: Type III rest 99.3 7.5E-12 1.6E-16 142.4 11.8 151 495-671 3-183 (184)
267 cd00046 DEXDc DEAD-like helica 99.3 2.7E-11 5.9E-16 130.7 15.2 141 1358-1511 1-144 (144)
268 TIGR03117 cas_csf4 CRISPR-asso 99.3 7E-10 1.5E-14 144.7 30.4 59 507-574 12-70 (636)
269 PRK13103 secA preprotein trans 99.3 1.9E-10 4.1E-15 151.2 24.4 112 1360-1477 98-215 (913)
270 PF00271 Helicase_C: Helicase 99.3 8.4E-12 1.8E-16 120.8 8.1 73 793-875 6-78 (78)
271 TIGR03117 cas_csf4 CRISPR-asso 99.3 1.4E-09 3.1E-14 141.8 30.6 66 1346-1415 2-70 (636)
272 cd00079 HELICc Helicase superf 99.3 2.6E-11 5.7E-16 129.7 12.1 105 732-885 27-131 (131)
273 COG4889 Predicted helicase [Ge 99.3 2.2E-11 4.8E-16 151.9 12.7 340 492-886 158-583 (1518)
274 TIGR02562 cas3_yersinia CRISPR 99.3 8.9E-10 1.9E-14 145.7 27.9 161 496-672 409-636 (1110)
275 PRK11747 dinG ATP-dependent DN 99.2 2.1E-09 4.6E-14 145.2 31.9 130 733-903 534-689 (697)
276 PRK05298 excinuclease ABC subu 99.2 8.9E-11 1.9E-15 157.2 18.3 112 732-889 445-557 (652)
277 cd00079 HELICc Helicase superf 99.2 3.6E-11 7.9E-16 128.6 11.6 113 1565-1724 19-131 (131)
278 TIGR00604 rad3 DNA repair heli 99.2 1.8E-09 3.9E-14 147.2 29.5 72 1339-1412 8-82 (705)
279 TIGR02562 cas3_yersinia CRISPR 99.2 7.1E-10 1.5E-14 146.6 24.1 162 1343-1514 410-637 (1110)
280 COG1199 DinG Rad3-related DNA 99.2 6.7E-10 1.5E-14 151.5 24.5 200 662-903 405-632 (654)
281 PF00271 Helicase_C: Helicase 99.2 3.1E-11 6.7E-16 116.8 8.2 74 1631-1714 5-78 (78)
282 PRK12903 secA preprotein trans 99.2 3.5E-09 7.5E-14 137.8 27.3 127 495-635 78-210 (925)
283 COG4889 Predicted helicase [Ge 99.2 7.8E-11 1.7E-15 147.1 11.7 340 1339-1723 159-583 (1518)
284 COG1199 DinG Rad3-related DNA 99.2 6.5E-10 1.4E-14 151.7 21.5 200 1502-1742 404-632 (654)
285 PRK11747 dinG ATP-dependent DN 99.2 3.9E-09 8.4E-14 142.7 28.4 63 1341-1407 25-95 (697)
286 CHL00122 secA preprotein trans 99.2 3.5E-09 7.6E-14 138.9 26.3 127 495-635 76-208 (870)
287 PRK12902 secA preprotein trans 99.1 7.9E-09 1.7E-13 135.1 27.7 127 495-635 85-217 (939)
288 KOG0385 Chromatin remodeling c 99.1 1.2E-08 2.6E-13 128.0 23.9 328 494-892 166-602 (971)
289 KOG0385 Chromatin remodeling c 99.0 3.3E-08 7.1E-13 124.1 26.5 341 1340-1729 166-600 (971)
290 PRK12903 secA preprotein trans 99.0 2.5E-08 5.4E-13 130.0 26.4 128 1341-1477 78-211 (925)
291 CHL00122 secA preprotein trans 99.0 2.5E-08 5.3E-13 131.2 26.4 127 1342-1477 77-209 (870)
292 KOG0921 Dosage compensation co 99.0 1E-09 2.2E-14 138.3 13.1 338 505-895 387-780 (1282)
293 TIGR00604 rad3 DNA repair heli 99.0 4.3E-08 9.4E-13 133.8 30.0 74 492-573 7-83 (705)
294 PRK12902 secA preprotein trans 99.0 2.8E-08 6E-13 130.1 26.5 112 1360-1477 101-218 (939)
295 KOG0921 Dosage compensation co 99.0 3.9E-09 8.6E-14 133.2 15.2 417 1355-1853 391-864 (1282)
296 KOG0390 DNA repair protein, SN 99.0 1.3E-07 2.8E-12 123.6 28.8 366 494-889 237-707 (776)
297 KOG1000 Chromatin remodeling p 99.0 1.1E-07 2.3E-12 114.2 25.5 154 493-671 196-349 (689)
298 smart00490 HELICc helicase sup 99.0 1.6E-09 3.4E-14 105.5 8.0 72 794-875 11-82 (82)
299 KOG0390 DNA repair protein, SN 98.9 1.7E-07 3.6E-12 122.6 27.8 360 1339-1728 236-707 (776)
300 smart00490 HELICc helicase sup 98.8 7.5E-09 1.6E-13 100.7 8.2 72 1633-1714 11-82 (82)
301 PF02399 Herpes_ori_bp: Origin 98.8 2.5E-07 5.5E-12 120.3 23.7 303 511-889 49-388 (824)
302 KOG0387 Transcription-coupled 98.8 2.8E-06 6.2E-11 108.0 29.1 356 1339-1728 203-658 (923)
303 KOG0384 Chromodomain-helicase 98.7 3.2E-07 7E-12 121.0 18.0 337 475-891 355-813 (1373)
304 PF02399 Herpes_ori_bp: Origin 98.6 2.9E-06 6.3E-11 110.7 25.3 302 1357-1728 49-388 (824)
305 KOG1000 Chromatin remodeling p 98.6 2.2E-06 4.8E-11 103.2 21.7 368 1339-1738 196-614 (689)
306 KOG0387 Transcription-coupled 98.6 2.8E-06 6.1E-11 108.0 22.8 129 493-638 203-352 (923)
307 PF07652 Flavi_DEAD: Flaviviru 98.6 1.7E-07 3.7E-12 98.3 10.1 132 512-672 5-138 (148)
308 PRK12901 secA preprotein trans 98.6 1.6E-06 3.4E-11 115.1 20.8 126 496-635 170-302 (1112)
309 KOG0384 Chromodomain-helicase 98.6 9.1E-07 2E-11 116.9 17.2 86 1633-1729 723-812 (1373)
310 PF07652 Flavi_DEAD: Flaviviru 98.5 6.9E-07 1.5E-11 93.8 11.4 136 1357-1514 4-139 (148)
311 PF00176 SNF2_N: SNF2 family N 98.5 5E-07 1.1E-11 111.4 11.5 167 499-681 1-185 (299)
312 KOG0389 SNF2 family DNA-depend 98.5 8.4E-06 1.8E-10 103.7 21.1 377 1342-1747 400-908 (941)
313 PF00176 SNF2_N: SNF2 family N 98.4 1.5E-06 3.3E-11 107.1 14.6 163 1345-1519 1-182 (299)
314 PRK12901 secA preprotein trans 98.4 7.7E-06 1.7E-10 108.8 20.6 112 1360-1477 185-303 (1112)
315 smart00488 DEXDc2 DEAD-like he 98.4 2.3E-06 5E-11 104.1 13.1 75 493-573 7-84 (289)
316 smart00489 DEXDc3 DEAD-like he 98.4 2.3E-06 5E-11 104.1 13.1 75 493-573 7-84 (289)
317 smart00489 DEXDc3 DEAD-like he 98.4 2.9E-06 6.3E-11 103.2 13.6 73 1339-1412 7-83 (289)
318 smart00488 DEXDc2 DEAD-like he 98.4 2.9E-06 6.3E-11 103.2 13.6 73 1339-1412 7-83 (289)
319 KOG0392 SNF2 family DNA-depend 98.3 1.5E-05 3.2E-10 105.3 17.7 162 495-678 975-1148(1549)
320 COG5407 SEC63 Preprotein trans 98.3 7.9E-06 1.7E-10 97.1 13.2 167 1008-1201 227-397 (610)
321 KOG0389 SNF2 family DNA-depend 98.2 4.3E-05 9.4E-10 97.5 19.9 376 495-909 399-909 (941)
322 COG0610 Type I site-specific r 98.2 6.9E-05 1.5E-09 104.5 23.1 140 1358-1513 274-415 (962)
323 COG0610 Type I site-specific r 98.2 0.00012 2.5E-09 102.2 25.1 138 513-671 275-414 (962)
324 KOG1002 Nucleotide excision re 98.2 7.2E-05 1.6E-09 90.2 18.8 153 495-670 184-354 (791)
325 PF06862 DUF1253: Protein of u 98.0 0.0009 1.9E-08 84.2 26.1 302 549-896 36-422 (442)
326 KOG2340 Uncharacterized conser 98.0 0.00025 5.4E-09 86.9 18.2 350 494-892 215-671 (698)
327 PF07517 SecA_DEAD: SecA DEAD- 97.9 7.7E-05 1.7E-09 88.4 12.4 127 495-635 77-209 (266)
328 KOG4439 RNA polymerase II tran 97.9 0.00065 1.4E-08 86.0 20.0 165 495-670 325-501 (901)
329 KOG0392 SNF2 family DNA-depend 97.8 0.00079 1.7E-08 89.8 21.0 157 1341-1513 975-1141(1549)
330 COG0653 SecA Preprotein transl 97.8 0.00044 9.6E-09 91.6 18.8 112 513-635 95-212 (822)
331 PRK15483 type III restriction- 97.8 0.0002 4.2E-09 96.9 14.9 142 512-672 60-240 (986)
332 PRK15483 type III restriction- 97.7 0.00018 3.8E-09 97.3 12.3 143 1358-1513 60-240 (986)
333 PF07517 SecA_DEAD: SecA DEAD- 97.7 0.00026 5.7E-09 83.9 11.8 128 1341-1477 77-210 (266)
334 KOG4439 RNA polymerase II tran 97.6 0.004 8.8E-08 79.1 22.1 173 1341-1525 325-520 (901)
335 KOG2340 Uncharacterized conser 97.6 0.0016 3.4E-08 80.2 17.7 368 1340-1775 215-697 (698)
336 PF13086 AAA_11: AAA domain; P 97.6 0.00017 3.7E-09 85.4 9.7 70 1341-1412 1-75 (236)
337 PF06862 DUF1253: Protein of u 97.6 0.021 4.5E-07 72.3 28.0 251 1436-1734 129-421 (442)
338 PF13086 AAA_11: AAA domain; P 97.6 0.00031 6.7E-09 83.2 10.9 75 495-572 1-75 (236)
339 KOG1802 RNA helicase nonsense 97.6 0.00027 5.8E-09 88.6 10.2 81 491-586 406-486 (935)
340 PF02562 PhoH: PhoH-like prote 97.5 0.00013 2.8E-09 83.1 6.9 147 1340-1510 3-155 (205)
341 PF02562 PhoH: PhoH-like prote 97.5 0.00041 8.8E-09 79.1 10.1 60 493-562 2-61 (205)
342 COG0653 SecA Preprotein transl 97.5 0.0028 6E-08 84.4 18.2 129 1342-1477 79-213 (822)
343 PF13604 AAA_30: AAA domain; P 97.4 0.0009 2E-08 77.0 11.8 64 495-569 1-65 (196)
344 KOG1802 RNA helicase nonsense 97.4 0.0006 1.3E-08 85.5 9.8 79 1338-1426 407-485 (935)
345 PF13604 AAA_30: AAA domain; P 97.3 0.0014 3.1E-08 75.4 11.1 64 1341-1409 1-65 (196)
346 TIGR00376 DNA helicase, putati 97.2 0.002 4.4E-08 86.7 13.0 68 494-572 156-223 (637)
347 KOG0386 Chromatin remodeling c 97.2 0.0047 1E-07 81.6 15.5 126 495-637 394-529 (1157)
348 PF12340 DUF3638: Protein of u 97.2 0.0021 4.5E-08 73.9 11.0 132 1341-1477 23-185 (229)
349 KOG1002 Nucleotide excision re 97.2 0.0022 4.7E-08 77.9 11.3 154 1341-1512 184-355 (791)
350 KOG0386 Chromatin remodeling c 97.1 0.004 8.7E-08 82.2 13.9 84 1635-1729 752-839 (1157)
351 PRK10536 hypothetical protein; 97.1 0.00097 2.1E-08 78.0 6.9 60 492-561 56-115 (262)
352 TIGR00376 DNA helicase, putati 97.0 0.0024 5.2E-08 86.0 11.4 68 1340-1412 156-223 (637)
353 KOG0388 SNF2 family DNA-depend 97.0 0.023 5.1E-07 72.0 18.7 81 800-890 1074-1155(1185)
354 PF13245 AAA_19: Part of AAA d 97.0 0.0023 4.9E-08 61.4 7.4 61 503-570 2-62 (76)
355 PF13307 Helicase_C_2: Helicas 96.9 0.001 2.3E-08 74.4 5.7 130 1573-1738 8-161 (167)
356 COG0553 HepA Superfamily II DN 96.9 0.037 8E-07 79.2 22.1 333 1339-1731 336-825 (866)
357 PF13245 AAA_19: Part of AAA d 96.9 0.0036 7.9E-08 60.0 7.8 60 1349-1410 2-62 (76)
358 PRK10536 hypothetical protein; 96.7 0.018 4E-07 67.6 13.8 143 1338-1508 56-210 (262)
359 PF13401 AAA_22: AAA domain; P 96.7 0.0085 1.8E-07 64.0 10.5 121 1356-1510 3-125 (131)
360 KOG0391 SNF2 family DNA-depend 96.7 0.004 8.7E-08 82.3 8.8 137 1341-1488 615-761 (1958)
361 PF13872 AAA_34: P-loop contai 96.6 0.015 3.2E-07 69.5 11.6 161 495-671 37-221 (303)
362 TIGR00596 rad1 DNA repair prot 96.5 0.079 1.7E-06 72.6 20.0 52 1144-1195 759-810 (814)
363 PF13307 Helicase_C_2: Helicas 96.5 0.005 1.1E-07 69.0 7.3 127 733-897 9-159 (167)
364 TIGR01447 recD exodeoxyribonuc 96.5 0.024 5.3E-07 75.5 14.8 153 1331-1508 136-293 (586)
365 PRK10875 recD exonuclease V su 96.5 0.022 4.8E-07 76.0 14.0 154 1332-1509 143-300 (615)
366 PF09848 DUF2075: Uncharacteri 96.5 0.0052 1.1E-07 77.7 7.8 95 1359-1478 3-97 (352)
367 COG3421 Uncharacterized protei 96.3 0.05 1.1E-06 68.6 14.6 301 516-837 2-347 (812)
368 TIGR01447 recD exodeoxyribonuc 96.3 0.033 7.2E-07 74.3 14.1 70 498-574 148-217 (586)
369 PF13872 AAA_34: P-loop contai 96.3 0.05 1.1E-06 65.1 13.9 161 1341-1512 37-221 (303)
370 PF09848 DUF2075: Uncharacteri 96.3 0.0098 2.1E-07 75.2 8.5 95 513-637 3-97 (352)
371 PRK10875 recD exonuclease V su 96.2 0.044 9.5E-07 73.3 14.3 144 496-668 153-300 (615)
372 PF00580 UvrD-helicase: UvrD/R 96.2 0.0083 1.8E-07 74.5 7.3 124 496-633 1-125 (315)
373 COG1875 NYN ribonuclease and A 96.0 0.028 6.2E-07 67.4 9.9 64 1338-1403 225-289 (436)
374 TIGR01448 recD_rel helicase, p 96.0 0.035 7.5E-07 76.2 12.3 62 1340-1405 322-383 (720)
375 PRK13889 conjugal transfer rel 95.9 0.056 1.2E-06 75.4 13.7 61 495-566 346-406 (988)
376 COG3587 Restriction endonuclea 95.9 0.023 4.9E-07 74.5 9.1 196 819-1059 482-682 (985)
377 PRK06526 transposase; Provisio 95.9 0.058 1.3E-06 64.6 12.1 23 1354-1376 95-117 (254)
378 TIGR02768 TraA_Ti Ti-type conj 95.9 0.06 1.3E-06 74.2 13.8 62 494-566 351-412 (744)
379 PF12340 DUF3638: Protein of u 95.8 0.044 9.6E-07 63.3 10.3 145 481-636 9-185 (229)
380 PRK12723 flagellar biosynthesi 95.8 0.12 2.5E-06 65.5 14.5 131 1357-1521 174-306 (388)
381 TIGR02768 TraA_Ti Ti-type conj 95.7 0.063 1.4E-06 74.0 13.2 61 1340-1405 351-411 (744)
382 COG1875 NYN ribonuclease and A 95.7 0.084 1.8E-06 63.6 12.1 64 492-563 225-289 (436)
383 cd00009 AAA The AAA+ (ATPases 95.7 0.04 8.7E-07 59.5 9.2 38 1357-1399 19-56 (151)
384 KOG1132 Helicase of the DEAD s 95.7 0.043 9.4E-07 72.4 10.5 79 495-573 21-133 (945)
385 PF00580 UvrD-helicase: UvrD/R 95.7 0.018 4E-07 71.5 7.1 71 1342-1416 1-71 (315)
386 PRK08181 transposase; Validate 95.6 0.07 1.5E-06 64.3 11.4 61 1340-1406 86-149 (269)
387 KOG1803 DNA helicase [Replicat 95.6 0.023 5E-07 72.3 7.4 67 494-571 184-250 (649)
388 PF13401 AAA_22: AAA domain; P 95.6 0.024 5.1E-07 60.6 6.7 26 510-535 3-28 (131)
389 PRK13889 conjugal transfer rel 95.6 0.092 2E-06 73.3 13.7 125 1340-1510 345-470 (988)
390 smart00492 HELICc3 helicase su 95.6 0.044 9.5E-07 59.4 8.5 89 1635-1724 23-135 (141)
391 KOG1803 DNA helicase [Replicat 95.5 0.02 4.4E-07 72.7 6.7 67 1340-1411 184-250 (649)
392 PRK12377 putative replication 95.5 0.077 1.7E-06 63.1 11.0 46 1357-1408 101-146 (248)
393 PRK12377 putative replication 95.4 0.094 2E-06 62.4 11.3 48 511-570 101-148 (248)
394 PF00308 Bac_DnaA: Bacterial d 95.4 0.17 3.6E-06 59.5 13.3 124 1342-1513 15-142 (219)
395 cd00009 AAA The AAA+ (ATPases 95.4 0.049 1.1E-06 58.8 8.4 21 511-531 19-39 (151)
396 TIGR01448 recD_rel helicase, p 95.3 0.093 2E-06 72.1 12.6 64 494-567 322-385 (720)
397 PF05970 PIF1: PIF1-like helic 95.2 0.068 1.5E-06 67.8 10.0 124 1341-1496 1-131 (364)
398 PF05970 PIF1: PIF1-like helic 95.1 0.048 1E-06 69.2 8.3 109 495-637 1-116 (364)
399 KOG1132 Helicase of the DEAD s 95.1 0.091 2E-06 69.5 10.6 74 1341-1415 21-134 (945)
400 PTZ00112 origin recognition co 95.0 0.23 5E-06 66.6 13.8 42 513-558 782-824 (1164)
401 PRK06526 transposase; Provisio 95.0 0.16 3.4E-06 60.9 11.6 29 508-536 95-123 (254)
402 PRK07952 DNA replication prote 94.9 0.36 7.9E-06 57.3 14.3 58 1341-1404 76-140 (244)
403 PRK08181 transposase; Validate 94.9 0.15 3.2E-06 61.5 11.0 60 496-567 88-150 (269)
404 PRK12723 flagellar biosynthesi 94.9 0.39 8.4E-06 60.9 15.1 132 512-681 175-307 (388)
405 PF00448 SRP54: SRP54-type pro 94.7 0.28 6.1E-06 56.4 12.3 129 514-680 4-134 (196)
406 PRK13826 Dtr system oriT relax 94.7 0.21 4.6E-06 70.2 13.3 62 494-566 380-441 (1102)
407 KOG0391 SNF2 family DNA-depend 94.6 0.15 3.2E-06 68.4 10.7 151 495-670 615-775 (1958)
408 PRK13826 Dtr system oriT relax 94.6 0.29 6.3E-06 68.9 14.3 61 1340-1405 380-440 (1102)
409 PRK07952 DNA replication prote 94.6 0.43 9.4E-06 56.7 13.7 26 512-538 100-125 (244)
410 PRK11054 helD DNA helicase IV; 94.6 0.07 1.5E-06 72.6 8.0 84 494-608 195-278 (684)
411 PRK10919 ATP-dependent DNA hel 94.5 0.063 1.4E-06 73.5 7.7 86 495-608 2-87 (672)
412 PF00448 SRP54: SRP54-type pro 94.5 0.35 7.6E-06 55.7 12.4 124 1359-1513 3-127 (196)
413 COG1419 FlhF Flagellar GTP-bin 94.5 0.81 1.8E-05 57.1 16.0 143 511-705 203-345 (407)
414 PF05621 TniB: Bacterial TniB 94.4 0.092 2E-06 63.1 7.7 124 1358-1508 62-187 (302)
415 KOG1805 DNA replication helica 94.4 0.1 2.2E-06 69.7 8.6 123 1339-1477 667-809 (1100)
416 KOG0989 Replication factor C, 94.2 0.2 4.4E-06 59.3 9.6 45 620-671 126-170 (346)
417 PTZ00112 origin recognition co 94.1 0.51 1.1E-05 63.5 13.9 39 1358-1397 781-823 (1164)
418 smart00382 AAA ATPases associa 94.1 0.13 2.8E-06 54.9 7.4 44 511-565 2-45 (148)
419 smart00382 AAA ATPases associa 94.1 0.13 2.8E-06 54.9 7.5 45 1357-1406 2-46 (148)
420 PRK08116 hypothetical protein; 94.0 0.55 1.2E-05 56.9 13.4 44 1359-1408 116-159 (268)
421 TIGR02881 spore_V_K stage V sp 94.0 0.26 5.5E-06 59.7 10.5 21 512-532 43-63 (261)
422 PF14520 HHH_5: Helix-hairpin- 93.9 0.072 1.6E-06 48.7 4.3 54 1978-2034 6-59 (60)
423 PRK04296 thymidine kinase; Pro 93.9 0.11 2.4E-06 59.5 6.9 34 1360-1398 5-38 (190)
424 PRK11889 flhF flagellar biosyn 93.9 0.76 1.7E-05 57.4 14.2 129 1357-1521 241-371 (436)
425 TIGR02782 TrbB_P P-type conjug 93.9 0.16 3.5E-06 62.3 8.6 62 1339-1403 114-175 (299)
426 PRK14722 flhF flagellar biosyn 93.8 0.57 1.2E-05 58.9 13.3 128 509-678 135-264 (374)
427 COG3587 Restriction endonuclea 93.8 0.19 4E-06 66.4 9.1 146 1355-1513 72-244 (985)
428 PRK13833 conjugal transfer pro 93.8 0.15 3.2E-06 63.0 7.9 62 1339-1403 126-187 (323)
429 PRK14087 dnaA chromosomal repl 93.8 0.45 9.7E-06 62.0 12.8 108 1358-1511 142-249 (450)
430 PRK08084 DNA replication initi 93.8 0.49 1.1E-05 56.2 12.2 52 1342-1398 28-81 (235)
431 KOG1805 DNA replication helica 93.6 0.26 5.5E-06 66.0 10.0 122 493-636 667-809 (1100)
432 PHA03333 putative ATPase subun 93.6 1.2 2.7E-05 58.7 16.0 148 495-670 169-332 (752)
433 PRK11054 helD DNA helicase IV; 93.6 0.19 4.2E-06 68.4 9.3 97 1332-1455 185-285 (684)
434 PF05621 TniB: Bacterial TniB 93.5 0.22 4.9E-06 59.8 8.6 121 512-666 62-186 (302)
435 PRK06893 DNA replication initi 93.5 0.51 1.1E-05 55.9 11.7 36 1358-1398 40-75 (229)
436 COG1444 Predicted P-loop ATPas 93.5 0.8 1.7E-05 61.5 14.4 144 497-675 216-361 (758)
437 PRK14974 cell division protein 93.5 0.58 1.2E-05 58.2 12.4 123 1358-1513 141-266 (336)
438 COG3421 Uncharacterized protei 93.4 0.13 2.9E-06 65.0 6.7 151 1362-1520 2-174 (812)
439 PRK14722 flhF flagellar biosyn 93.4 0.57 1.2E-05 58.9 12.2 122 1356-1513 136-259 (374)
440 cd01120 RecA-like_NTPases RecA 93.4 0.33 7.2E-06 53.6 9.4 40 514-564 2-41 (165)
441 TIGR01075 uvrD DNA helicase II 93.4 0.26 5.7E-06 68.4 10.3 110 1340-1475 3-114 (715)
442 PRK08727 hypothetical protein; 93.3 0.56 1.2E-05 55.7 11.7 35 1358-1397 42-76 (233)
443 PF05127 Helicase_RecD: Helica 93.3 0.042 9.1E-07 61.4 2.0 130 515-677 1-130 (177)
444 PHA02533 17 large terminase pr 93.3 0.9 2E-05 60.2 14.6 71 1341-1415 59-129 (534)
445 PRK08116 hypothetical protein; 93.3 0.8 1.7E-05 55.5 13.1 45 514-570 117-161 (268)
446 PRK10919 ATP-dependent DNA hel 93.2 0.14 3E-06 70.2 7.2 109 1341-1474 2-112 (672)
447 PF00308 Bac_DnaA: Bacterial d 93.2 1.1 2.3E-05 52.7 13.6 123 497-672 16-142 (219)
448 PRK11773 uvrD DNA-dependent he 93.2 0.16 3.4E-06 70.5 7.8 110 494-633 8-118 (721)
449 PRK13894 conjugal transfer ATP 93.2 0.18 4E-06 62.3 7.5 61 1339-1402 130-190 (319)
450 cd01120 RecA-like_NTPases RecA 93.1 0.47 1E-05 52.3 10.1 40 1360-1404 2-41 (165)
451 PF03796 DnaB_C: DnaB-like hel 93.1 0.24 5.3E-06 59.8 8.4 143 1356-1510 18-179 (259)
452 COG1419 FlhF Flagellar GTP-bin 93.1 1.5 3.2E-05 55.0 14.8 131 1357-1522 203-333 (407)
453 PRK00149 dnaA chromosomal repl 93.1 0.42 9.2E-06 62.6 11.0 46 1358-1407 149-194 (450)
454 PRK14974 cell division protein 93.1 0.84 1.8E-05 56.8 12.9 121 513-672 142-266 (336)
455 PRK06921 hypothetical protein; 93.0 0.68 1.5E-05 56.0 11.9 45 1356-1405 116-160 (266)
456 TIGR01075 uvrD DNA helicase II 93.0 0.16 3.6E-06 70.4 7.5 109 494-633 3-113 (715)
457 TIGR02928 orc1/cdc6 family rep 93.0 0.65 1.4E-05 59.2 12.5 24 512-536 41-64 (365)
458 PRK06835 DNA replication prote 93.0 0.51 1.1E-05 58.6 11.0 46 1356-1407 182-227 (329)
459 PRK08903 DnaA regulatory inact 93.0 0.74 1.6E-05 54.4 12.0 33 497-529 25-60 (227)
460 cd01124 KaiC KaiC is a circadi 93.0 0.15 3.3E-06 58.1 6.0 47 514-572 2-48 (187)
461 PRK11889 flhF flagellar biosyn 93.0 1.1 2.4E-05 56.0 13.5 128 512-681 242-372 (436)
462 TIGR03420 DnaA_homol_Hda DnaA 92.9 0.43 9.3E-06 56.3 9.9 23 510-532 37-59 (226)
463 CHL00181 cbbX CbbX; Provisiona 92.9 0.66 1.4E-05 56.8 11.6 21 512-532 60-80 (287)
464 smart00492 HELICc3 helicase su 92.9 0.33 7.2E-06 52.7 8.0 87 798-885 25-135 (141)
465 PRK05642 DNA replication initi 92.8 0.57 1.2E-05 55.7 10.7 36 1358-1398 46-81 (234)
466 TIGR03420 DnaA_homol_Hda DnaA 92.8 0.67 1.5E-05 54.7 11.4 21 1356-1376 37-57 (226)
467 PRK08903 DnaA regulatory inact 92.8 0.63 1.4E-05 55.1 11.0 32 1344-1375 26-60 (227)
468 TIGR03877 thermo_KaiC_1 KaiC d 92.8 0.48 1E-05 56.5 10.0 49 1357-1411 21-69 (237)
469 PRK04296 thymidine kinase; Pro 92.8 0.088 1.9E-06 60.4 3.7 34 514-558 5-38 (190)
470 TIGR01074 rep ATP-dependent DN 92.8 0.21 4.7E-06 68.9 8.1 86 495-608 1-86 (664)
471 TIGR01547 phage_term_2 phage t 92.7 0.48 1E-05 61.1 10.8 136 1360-1513 4-142 (396)
472 COG4962 CpaF Flp pilus assembl 92.7 0.24 5.2E-06 60.1 7.2 60 491-562 153-212 (355)
473 cd00984 DnaB_C DnaB helicase C 92.6 0.66 1.4E-05 55.4 11.0 139 1356-1510 12-172 (242)
474 PRK00411 cdc6 cell division co 92.6 0.92 2E-05 58.5 13.1 38 1357-1397 55-92 (394)
475 PF00004 AAA: ATPase family as 92.6 0.27 5.8E-06 52.3 6.9 17 1360-1376 1-17 (132)
476 TIGR02881 spore_V_K stage V sp 92.6 0.57 1.2E-05 56.7 10.4 20 1358-1377 43-62 (261)
477 PRK13894 conjugal transfer ATP 92.5 0.22 4.8E-06 61.6 6.9 59 495-562 132-190 (319)
478 PRK08727 hypothetical protein; 92.4 0.83 1.8E-05 54.3 11.4 17 513-529 43-59 (233)
479 TIGR01547 phage_term_2 phage t 92.4 0.44 9.6E-06 61.5 9.8 136 514-672 4-142 (396)
480 cd01124 KaiC KaiC is a circadi 92.3 0.29 6.2E-06 55.9 7.1 47 1359-1411 1-47 (187)
481 TIGR00362 DnaA chromosomal rep 92.3 0.61 1.3E-05 60.3 10.8 43 1359-1405 138-180 (405)
482 COG2256 MGS1 ATPase related to 92.3 0.4 8.7E-06 59.0 8.3 20 1358-1377 49-68 (436)
483 COG1474 CDC6 Cdc6-related prot 92.2 0.67 1.5E-05 58.5 10.6 134 1347-1511 30-166 (366)
484 TIGR02928 orc1/cdc6 family rep 92.2 1.7 3.7E-05 55.4 14.7 41 1357-1398 40-82 (365)
485 PRK05703 flhF flagellar biosyn 92.1 2 4.2E-05 55.6 15.0 126 1357-1519 221-349 (424)
486 PRK14088 dnaA chromosomal repl 92.1 0.71 1.5E-05 60.1 11.1 38 1358-1398 131-168 (440)
487 PRK05707 DNA polymerase III su 92.1 0.73 1.6E-05 57.4 10.7 37 496-532 4-43 (328)
488 TIGR03015 pepcterm_ATPase puta 92.0 0.76 1.6E-05 55.8 10.8 36 1341-1376 23-62 (269)
489 PRK14960 DNA polymerase III su 92.0 0.45 9.8E-06 63.0 9.1 31 502-532 25-58 (702)
490 PRK11773 uvrD DNA-dependent he 92.0 0.3 6.6E-06 67.7 8.1 109 1340-1474 8-118 (721)
491 cd01122 GP4d_helicase GP4d_hel 92.0 1.2 2.5E-05 54.3 12.3 143 1355-1510 28-190 (271)
492 PRK13833 conjugal transfer pro 92.0 0.3 6.6E-06 60.2 7.1 59 495-562 128-186 (323)
493 PRK05748 replicative DNA helic 92.0 0.65 1.4E-05 60.8 10.7 144 1355-1510 201-364 (448)
494 smart00491 HELICc2 helicase su 91.9 0.29 6.2E-06 53.2 6.1 87 1637-1724 22-136 (142)
495 PF05876 Terminase_GpA: Phage 91.9 0.34 7.3E-06 64.7 8.0 168 1340-1523 15-193 (557)
496 PRK14964 DNA polymerase III su 91.7 0.68 1.5E-05 60.3 10.2 30 503-532 24-56 (491)
497 PRK05973 replicative DNA helic 91.7 0.94 2E-05 53.5 10.4 142 1341-1510 50-192 (237)
498 PRK06921 hypothetical protein; 91.7 0.57 1.2E-05 56.7 9.0 45 511-566 117-161 (266)
499 PRK06645 DNA polymerase III su 91.6 1.2 2.6E-05 58.5 12.4 21 512-532 44-64 (507)
500 PRK08691 DNA polymerase III su 91.6 0.68 1.5E-05 62.0 10.1 40 621-667 117-156 (709)
No 1
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.9e-301 Score=2763.76 Aligned_cols=1624 Identities=68% Similarity=1.076 Sum_probs=1497.9
Q ss_pred HHHHHHhhhcccccccccCCCcCCCCCCCCCCCcceeecCCCCCccchhcccccCCCcchhhhhccCCCCccccccCCCC
Q 000114 166 LVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGGGI 245 (2158)
Q Consensus 166 l~~l~k~ItDy~~~~~~~~~~~~~~~~~~d~~~gv~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2158)
||+|+|+||||...++. ++..+..+++..||+|.|++.|++++++..+.++++.++|++...+......++-....
T Consensus 1 lV~l~k~itdy~~~~~s----k~~~d~~~~~~e~v~v~~~e~dde~~~~l~~~vkse~~ed~~~~~ee~~k~~kq~~~~~ 76 (1674)
T KOG0951|consen 1 LVKLGKLITDYELEQDS----KKVMDIGIDAAEGVEVEVEEIDDESLQDLFDMVKSELDEDDKNVKEEVAKFVKQVPAII 76 (1674)
T ss_pred CccccccceeeeecCCc----hhhhhccccccccCccccccCcchhhhHHHHHhhhhhccchhhhhhhhhhhheeccccc
Confidence 58999999999654432 11223456666799999998877776543444543332221111000001111111111
Q ss_pred CCCCCCCCcCCCCCCCcccCChHHHHHHHHhHhccCCChHHHHHHHHHHHHHHhc-CChhHHHHHHHhccCCCChhHHHH
Q 000114 246 DDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAE-GDDREVENKLLYHLQFDKFSLIKF 324 (2158)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~ 324 (2158)
+ .++...+ ....+++||++||||+|++.|. ++..+|+....+..+|+. .+++++|++|+.+++|++|.||+.
T Consensus 77 k-~el~~d~---q~t~~~dIda~~LQR~irk~ye---la~~~Qe~~~k~~~ilr~~~~~~~lE~~L~~ll~~e~~slV~~ 149 (1674)
T KOG0951|consen 77 K-TELLIDA---QKTRESDIDAPWLQRKIRKVYE---LASRLQEKERKAAEILRTASDDGDLEPKLVVLLQFEKISLVEF 149 (1674)
T ss_pred c-chhhhhh---hhcchhhhhHHHHHHHHHHHHh---cchhhHHHHHHHHHhHhhccCchhhhHHHHHhhhhhhhHHHHH
Confidence 1 1100000 1145899999999999999999 777777777777777777 689999999999999999999999
Q ss_pred HHhchhhhHHHhhhhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHhHHHHHH-HHhhhhhhHHHHHHHhhhccccCCCC
Q 000114 325 LLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKE-RQKNLEKSIREEARRLKDESASDGGR 403 (2158)
Q Consensus 325 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (2158)
|++||++|+|||+|++|..++|+..|++.|+..+..+..++.++..+...... ..+.. +.++ .+.++..
T Consensus 150 l~kNr~~i~~~t~L~~aaresE~~siEe~m~~lgp~l~d~V~~~~a~~~~~~~qeek~~-~l~~--~e~~~~~------- 219 (1674)
T KOG0951|consen 150 LRKNRLGIVWCTRLARAARESERLSIEEIMRFLGPELNDIVAKYIATRQTKSEQEEKEK-KLEK--REELLVS------- 219 (1674)
T ss_pred HHhhcchhhHHHHhhhhhccchhccHHHHHhhcChhhHHHHHHHHhhhcccccchhhhh-hhhc--cchhhhh-------
Confidence 99999999999999999888999999999999863367888888765432211 11000 0111 1111110
Q ss_pred CCCCCccCCCCCCcCCccccccccccccccCCcccccccccCCCCCcccccCcceEEecCCCCCCCCCCCCcccccCCCC
Q 000114 404 DRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMP 483 (2158)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp 483 (2158)
. ....++...++...++.+|++.++|++|+++|.+++|.+|+||++..+++|+|+|||+++..|+..++.+..++++|
T Consensus 220 -~-~~ls~td~~~v~~~~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP 297 (1674)
T KOG0951|consen 220 -V-IALSKTDVLGVLEMRPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISELP 297 (1674)
T ss_pred -h-hhhcccccccccccCcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeCCCCCCCCCCccceeEeecCCc
Confidence 0 01111122335678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000114 484 EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2158)
Q Consensus 484 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa 563 (2158)
+|.+++|.|..+||++|++++++++.+++|+++|||||+|||++|++.||+.+..+.+.++..+...+|++|++|+++||
T Consensus 298 ~Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLv 377 (1674)
T KOG0951|consen 298 KWNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALV 377 (1674)
T ss_pred chhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhH
Q 000114 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2158)
Q Consensus 564 ~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~l 643 (2158)
++++..|.+++.++||+|.++|||.+.+.+++.+++||||||||||+++|+.+++.+.+.++++||||+|++||+|||++
T Consensus 378 qE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvL 457 (1674)
T KOG0951|consen 378 QEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVL 457 (1674)
T ss_pred HHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHH
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~ 723 (2158)
|+|++|+.+..+.....+|++|||||||||+||+.||++++ .++|+|+++|||+|+.++++|+++++..+++++||+.|
T Consensus 458 ESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~ 536 (1674)
T KOG0951|consen 458 ESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEAC 536 (1674)
T ss_pred HHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEeccccCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCC
Q 000114 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2158)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHag 803 (2158)
|++++++++.+|+|||||||+++.++|+.+++.+...+.+..|++.++.++++++.++....+.+|++++++|||+||||
T Consensus 537 yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAG 616 (1674)
T KOG0951|consen 537 YEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAG 616 (1674)
T ss_pred HHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEE
Q 000114 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2158)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2158)
|++.+|..++++|++|+++|||||+|+|||||+|+++|||+||++|||++|+|.++|+.+.+||.|||||||+|+.|+++
T Consensus 617 l~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegi 696 (1674)
T KOG0951|consen 617 LNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGI 696 (1674)
T ss_pred CCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchh
Q 000114 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT 963 (2158)
Q Consensus 884 il~~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~ 963 (2158)
+++.++++++|.+++++|+||||++.++|.|.|||||++| +++.+|+++||+|||+|+||.+||++|+++++ ..|..
T Consensus 697 iit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~--~~d~~ 773 (1674)
T KOG0951|consen 697 IITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPE--ASDRL 773 (1674)
T ss_pred eccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcc--cchHH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999997 44899
Q ss_pred HHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCc
Q 000114 964 LGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVT 1043 (2158)
Q Consensus 964 l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~ 1043 (2158)
+++++.+++|+|+..|+++|+|.||+++|.+++|++|+|+|+|||.+.+|..|++.|+++|++++++++||+|+||++++
T Consensus 774 le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~s 853 (1674)
T KOG0951|consen 774 LEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVS 853 (1674)
T ss_pred HHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 000114 1044 VRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123 (2158)
Q Consensus 1044 ~r~~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~ 1123 (2158)
+|++|+.+|++|++++|||+++.+++|++|||+|||+|||+++++||+|.+||+||.|+|+|++||+|||++++||++++
T Consensus 854 vr~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~ 933 (1674)
T KOG0951|consen 854 VREEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLA 933 (1674)
T ss_pred ccHHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchhHHHHHHHHhcCCcceEEE
Q 000114 1124 EKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAA 1203 (2158)
Q Consensus 1124 ~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~ 1203 (2158)
..+|++|||+++|||+.++|||||+++|.+++++||++.++|.+++||++.|+++++|.|++|+.++.++++||++.+++
T Consensus 934 ~~~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~ 1013 (1674)
T KOG0951|consen 934 QMALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSA 1013 (1674)
T ss_pred HHHHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCceEEEEEEEecCCcccCCCCCCcccEEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEE
Q 000114 1204 HVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFI 1283 (2158)
Q Consensus 1204 ~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v 1283 (2158)
++|||||+.++|+|+|+|+|.||+++||..++||++|||.++++|+|+++|.++++ +|++.|++|+++| ||+|||
T Consensus 1014 ~vqpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~----~~~v~ft~~~~~~-pP~~fi 1088 (1674)
T KOG0951|consen 1014 HVQPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK----EHTVNFTVPLFEP-PPQYFI 1088 (1674)
T ss_pred eeeeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC----ceEEEEEeecCCC-CCceEE
Confidence 99999999999999999999999999999999999999999999999999999984 9999999999999 999999
Q ss_pred EEecccccCCCcccccccccccCCCCCCCCCcCCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEE
Q 000114 1284 RVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVA 1363 (2158)
Q Consensus 1284 ~~vSd~wlg~e~~~~i~~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ 1363 (2158)
+++||+|+++++.+|++|+|+++|+++||||+++|++|+|++++.|+.+..+|. .+||+|+|+|+.+|++++||+|+
T Consensus 1089 ~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~---~~n~iqtqVf~~~y~~nd~v~vg 1165 (1674)
T KOG0951|consen 1089 RLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQ---DFNPIQTQVFTSLYNTNDNVLVG 1165 (1674)
T ss_pred EEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhcc---ccCCceEEEEeeeecccceEEEe
Confidence 999999999999999999999999999999999999999999999999999987 44999999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEE
Q 000114 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIII 1443 (2158)
Q Consensus 1364 ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV 1443 (2158)
||+|||||.|+++++++ . .+.+ +++||+|..+.+..++..|.++|+..+|+.++.++|+.+.+.+.++.++|+|
T Consensus 1166 a~~gsgkt~~ae~a~l~---~-~~~~--~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii 1239 (1674)
T KOG0951|consen 1166 APNGSGKTACAELALLR---P-DTIG--RAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVII 1239 (1674)
T ss_pred cCCCCchhHHHHHHhcC---C-ccce--EEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEE
Confidence 99999999999999996 2 2334 9999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhcc
Q 000114 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGA 1523 (2158)
Q Consensus 1444 ~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~ 1523 (2158)
+||++|+.+ + ..+.++++|.||+|++++..|+.+|.+++ |++|++|+.+++|+|++|.+++|++|+ +|.
T Consensus 1240 ~tpe~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~ 1308 (1674)
T KOG0951|consen 1240 STPEQWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGA 1308 (1674)
T ss_pred echhHHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---ccc
Confidence 999999987 2 57999999999999999889999999999 999999999999999999999999998 999
Q ss_pred CCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCc
Q 000114 1524 TSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2158)
Q Consensus 1524 ~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~ 1603 (2158)
...++|||.|+.||+|++++++++...++.+++.+|.++.|.++.++...++|++||+|+|+.|+.+|..++.++.++.+
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~ 1388 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP 1388 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999998877633
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEe
Q 000114 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2158)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~ 1683 (2158)
. ++....++ .+..|++.+.+||+ |.||+..+...+..+|..|.|+|+|.... +||+-..++.||+|
T Consensus 1389 ~---~l~~~~e~--------~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvm 1454 (1674)
T KOG0951|consen 1389 D---YLLSELEE--------CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVM 1454 (1674)
T ss_pred H---HHHHHHhc--------chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEe
Confidence 2 32211111 57889999999999 99999999999999999999999999999 99999999999999
Q ss_pred cceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCc
Q 000114 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGV 1763 (2158)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~ 1763 (2158)
||++|||++|.|.|||+++++||+|+|.| .|.|+++|+.++++||++|+++|+|+||+|.+.|||++|+||++++
T Consensus 1455 gt~~ydg~e~~~~~y~i~~ll~m~G~a~~-----~~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~t 1529 (1674)
T KOG0951|consen 1455 GTQYYDGKEHSYEDYPIAELLQMVGLASG-----AGKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKT 1529 (1674)
T ss_pred cceeecccccccccCchhHHHHHhhhhcC-----CccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999998 5699999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhccc
Q 000114 1764 IENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1843 (2158)
Q Consensus 1764 i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I 1843 (2158)
|+|+|||+||+||+|+|||+.+||+||++++++++|+|+|||++||+++.+|+.++||++++.+. .+|+|+++||+
T Consensus 1530 ienkqd~vd~lt~s~~yrr~~~np~yy~l~~v~~~~~S~~lS~lvet~l~dl~~s~~i~v~dad~----~l~~Ias~y~i 1605 (1674)
T KOG0951|consen 1530 IENKQDAVDYLTWSFMYRRLPQNPNYYNLQGVSHRHLSDFLSELVETTLNDLEESKCIEVDDEDD----SLGMIASYYYI 1605 (1674)
T ss_pred HHhHHHHHHHHHHHHhhhccccCcceecccccchhhhhhHHHHHHHHHHHHhhcCceEEeecccc----ccchhhhhcee
Confidence 99999999999999999999999999999999999999999999999999999999999987666 39999999999
Q ss_pred ChhhHHHHHhhcCCCCCHHHH
Q 000114 1844 SYTTIERFSSSLTPKTRMKGL 1864 (2158)
Q Consensus 1844 ~~~T~~~f~~~l~~~~~~~~l 1864 (2158)
+|.|+..|..+++.++..+++
T Consensus 1606 ~y~ti~~f~~~L~~~t~~kgl 1626 (1674)
T KOG0951|consen 1606 SYITIERFSSSLSEKTKMKGL 1626 (1674)
T ss_pred eeEeeehhhhhhhhhhhhhhh
Confidence 999999999999888776666
No 2
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.1e-197 Score=1819.29 Aligned_cols=1191 Identities=49% Similarity=0.809 Sum_probs=1124.1
Q ss_pred CCccccccccccccccCCcccccccccCCCCCcccccCcceEEecCCCCCCCCCCCCcccccCCCChhhHhhcCCCCCCC
Q 000114 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (2158)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~ 497 (2158)
..+++++|--.+.+.. .-++.+.++.+|+|+.+...+.|||+.+|+....+ ....++++|++||+..+..|.+|++||
T Consensus 35 ~~~~~vf~~~~~~~~~-~~~~~~~k~~lp~~~~r~~~~~~eE~~~P~s~~~~-~~~~k~~~isdld~~~rk~~f~f~~fN 112 (1230)
T KOG0952|consen 35 IYYPHVFESRGLGMTD-AIFIIGIKFTLPEGSEREDYKTYEEVKIPASVPMP-MDGEKLLSISDLDDVGRKGFFSFEEFN 112 (1230)
T ss_pred ccchhHHHhhhhccch-hhhhccceEeccCCccccccCcceEEecCccCCCc-cccccceeEEecchhhhhhcccHHHHH
Confidence 3456777655444332 23455669999999999999999999999987777 566788899999999998888999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccC
Q 000114 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (2158)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~ 577 (2158)
.+|+.|||.++++++|+|||||||||||.+|+|+||+.+.++. ..+.+..+++|+|||+||||||.|+++.|.++|.++
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~-~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~ 191 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHE-EQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL 191 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc-cccccccCCceEEEEechHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999843 236677889999999999999999999999999999
Q ss_pred CcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccC-CCccccccceEEeecccccccCChhhHHHHHHHHHHHHhh
Q 000114 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSG-DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET 656 (2158)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~-~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~ 656 (2158)
|++|.++|||+++.+.++..++|||+||||||+++|++. +..+++.|+||||||+|+|+|+|||++|.|++|+++.++.
T Consensus 192 gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 192 GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 999999999999999889999999999999999999984 4677899999999999999999999999999999999999
Q ss_pred ccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhC-CCe
Q 000114 657 TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQ 735 (2158)
Q Consensus 657 ~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~ 735 (2158)
.+..+||||||||+||++|||.||++++..++|+|+..|||+|+.+.++|.+.++.......+.+.||+++.+... ++|
T Consensus 272 sqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~q 351 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQ 351 (1230)
T ss_pred hhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999999999999999886666778889999999988776 789
Q ss_pred EEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHH
Q 000114 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815 (2158)
Q Consensus 736 vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~ 815 (2158)
++||||+|+++.++|+.|.+.+........|++. ..++.+++|++.|+++|||||.++||..+++.
T Consensus 352 VlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~--------------~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 352 VLVFVHSRNETIRTAKKLRERAETNGEKDLFLPS--------------PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred EEEEEecChHHHHHHHHHHHHHHhcCcccccCCC--------------hhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 9999999999999999999998877766666543 25678999999999999999999999999999
Q ss_pred HhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 816 F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
|..|.++|||||+|||||||+||+.|||+||+.||..+|++.++++.|++|++|||||||||..|.++|+|+.+.+++|.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHH
Q 000114 896 SLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTA 975 (2158)
Q Consensus 896 ~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a 975 (2158)
++++++.||||+|..+|.|||||||++|||.|+++|++||+|||+|+||.+||..||+..+.+..||.+..++.+++..+
T Consensus 498 sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~ 577 (1230)
T KOG0952|consen 498 SLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVA 577 (1230)
T ss_pred HHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHH
Q 000114 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055 (2158)
Q Consensus 976 ~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l 1055 (2158)
+..|.+.+||.+|..++.+.+|++||+||+|||+|+||+.|++..++.+++.++|.++|+|+||..|++|++|+++|++|
T Consensus 578 ~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el 657 (1230)
T KOG0952|consen 578 AMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKEL 657 (1230)
T ss_pred HHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC-C-CCCCCCCCChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000114 1056 LDRV-P-IPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133 (2158)
Q Consensus 1056 ~~~~-~-~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v 1133 (2158)
++.. . .|... ...|+|+|+|+|||+..+..|+|++|+.|+.|||+||.||+|+++..++|+.++.+++.|||||
T Consensus 658 ~~~~~~~~~~~~----~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~i 733 (1230)
T KOG0952|consen 658 NEDSCEKYPFGG----EKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRI 733 (1230)
T ss_pred Hhcccccccccc----cchhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 9763 2 23222 2899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccCCCCCCccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchhHHHHHHHHhcCCcceEEEEEeeccCceE
Q 000114 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVL 1213 (2158)
Q Consensus 1134 ~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~~~~p~~~~~~ 1213 (2158)
+++||...+||+||++... ++ ++++. ++.+|..+++|+++.+.++| ++.++.+|.+++++.++|+|++++
T Consensus 734 er~mw~~~~~l~qf~~~~~---~~-~~~~~---~l~~L~~~~~g~~w~~~~~~---~k~l~~ip~v~v~a~~~p~t~~vl 803 (1230)
T KOG0952|consen 734 ERRMWDFFIPLKQFTLLLN---RK-ERKKL---TLLLLRKDELGELWHNVPYG---LKQLSGIPLVNVEALIQPITRNVL 803 (1230)
T ss_pred HHHHHhhhhhhhcCCcccc---hh-hhhcc---hHHhhhhhhhccccccCchh---hhhhccCCceehhhhhccchhhhh
Confidence 9999999999999998776 55 55543 78899999999999988888 889999999999999999999999
Q ss_pred EEEEEEecCCcccCCCCCCcccEEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEEEEecccccCC
Q 000114 1214 KVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGS 1293 (2158)
Q Consensus 1214 ~~~l~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~ 1293 (2158)
+|.+.++|+|.|++.+||++..+ +|++|.+...|+|++.+.+.++..++.+.+.|++|+++|+|++++++.+||.|+|+
T Consensus 804 ri~~~~~~~f~w~~~~hg~~g~~-i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~ 882 (1230)
T KOG0952|consen 804 RIEVAITPDFEWNDGIHGKAGQP-IFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGA 882 (1230)
T ss_pred eeeeccCCceEEecccccccCce-eEeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCC
Confidence 99999999999999999998777 99999999999999999999888889999999999999999999999999999999
Q ss_pred CcccccccccccCCCCCCCCCcCCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHH
Q 000114 1294 QTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373 (2158)
Q Consensus 1294 e~~~~i~~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~ 1373 (2158)
+...+++++|+++|+..++.|++++++|+|..+|.+..++.+|+ .|+|+|++.|.++|+.+.|+++.+|||+|||++
T Consensus 883 e~~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~---~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ 959 (1230)
T KOG0952|consen 883 ETVYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYK---YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVV 959 (1230)
T ss_pred ceeccccccceeccccccccccccccCCCcchhhccccHHHhhc---ccCCccceEEEEEeecchhhhhcCCccCcchhH
Confidence 99999999999999999999999999999999999999999987 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHH
Q 000114 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453 (2158)
Q Consensus 1374 a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~ 1453 (2158)
|++++++.+.. .+++ +++||+|.++|+.+..++|.+++... |+++..++|+...+......++++|+||++|+.++
T Consensus 960 ae~a~~~~~~~-~p~~--kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~ 1035 (1230)
T KOG0952|consen 960 AELAIFRALSY-YPGS--KVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGIS 1035 (1230)
T ss_pred HHHHHHHHhcc-CCCc--cEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCcc
Confidence 99999998887 4455 99999999999999999999888766 99999999999999888999999999999999999
Q ss_pred hhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCC
Q 000114 1454 RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPP 1533 (2158)
Q Consensus 1454 r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~ 1533 (2158)
|.|..++.+++++++|+||.|++++.+||++|.+++++.++..+++..+|++++|..+.|+.|+++|++.... +||.|
T Consensus 1036 Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~ 1113 (1230)
T KOG0952|consen 1036 RSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRP 1113 (1230)
T ss_pred ccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 99999
Q ss_pred CCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCc
Q 000114 1534 GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613 (2158)
Q Consensus 1534 ~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~ 1613 (2158)
..||+|+++++++++..+++.++..|++|+++++..+ ++.+|+|||++++++++.+|..|+..+..+.++.+ |+.+++
T Consensus 1114 svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~-sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~-fl~~de 1191 (1230)
T KOG0952|consen 1114 SVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTH-SPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQ-FLNMDE 1191 (1230)
T ss_pred ccccCCceEeecCCCchhcchhhhhcccHHHHHHhcC-CCCCceEEEeecccccccchHhHHhhccCCCCchh-ccCCCH
Confidence 9999999999999999999999999999999999998 99999999999999999999999999999998888 999999
Q ss_pred ccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1614 EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1614 ~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+++.+...++|..|+.++++|++.||+|+...||..+
T Consensus 1192 ~e~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1192 LELEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhhhhhhccccccccC
Confidence 99999999999999999999999999999999998653
No 3
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.4e-101 Score=961.93 Aligned_cols=800 Identities=29% Similarity=0.464 Sum_probs=678.4
Q ss_pred ccCCCCCCCCCcCCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHH
Q 000114 1304 LILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2158)
Q Consensus 1304 l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~ 1383 (2158)
.+.|...+++ ...-.++.++.|. ..++.-|.+|.+||.+|+.||+.+|++++|.|||||||||||.+|+|+|++.+.
T Consensus 76 ~~~P~s~~~~--~~~~k~~~isdld-~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik 152 (1230)
T KOG0952|consen 76 VKIPASVPMP--MDGEKLLSISDLD-DVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIK 152 (1230)
T ss_pred EecCccCCCc--cccccceeEEecc-hhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 3456555555 2223444555554 345433445999999999999999999999999999999999999999999998
Q ss_pred hhc-----CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhc
Q 000114 1384 KAS-----ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 1458 (2158)
Q Consensus 1384 ~~~-----~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~ 1458 (2158)
+.. ..+.+|+|||+|++|||.++++.|.++|+.. |++|.++|||+......+..++|||+|||+||.++|+|..
T Consensus 153 ~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~ 231 (1230)
T KOG0952|consen 153 EHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVG 231 (1230)
T ss_pred hhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc-cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeecc
Confidence 632 2345799999999999999999999999875 9999999999988776788999999999999999999875
Q ss_pred cc-cccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccC-CCceEecCCCCc
Q 000114 1459 RK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT-SHGLFNFPPGVR 1536 (2158)
Q Consensus 1459 ~~-~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~-~~~i~~f~~~~r 1536 (2158)
.. .++.|+||||||+|+|.++|||++|.+++|+....+.....+||||||||+||..|+|.||++. ..++|.|...+|
T Consensus 232 d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 232 DSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred chhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccccc
Confidence 54 5778999999999999999999999999999988888788999999999999999999999997 578999999999
Q ss_pred ccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccc
Q 000114 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (2158)
Q Consensus 1537 pv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (2158)
|+|+...+.+............+....+..+.+.+..+.+++|||++|..+..+|+.|++.....+..+. |+..
T Consensus 312 PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~-f~~~----- 385 (1230)
T KOG0952|consen 312 PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDL-FLPS----- 385 (1230)
T ss_pred ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccc-cCCC-----
Confidence 9999999999888766666777888889999999999999999999999999999999887766555444 4322
Q ss_pred hhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCc
Q 000114 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHT 1696 (2158)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~ 1696 (2158)
-.++.+++++..|+++||+||..+||..+++.|..|.++|||||++++||+|+|+..|||+||+.||.+.+...
T Consensus 386 ------~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~ 459 (1230)
T KOG0952|consen 386 ------PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFV 459 (1230)
T ss_pred ------hhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCcee
Confidence 25678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHH
Q 000114 1697 DYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTW 1776 (2158)
Q Consensus 1697 ~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~ 1776 (2158)
++.+.+++|+.||||||+||..|.++|++...+.++|..+|....||||+|..+|+||+||||+.|||.+..+|++||++
T Consensus 460 dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~y 539 (1230)
T KOG0952|consen 460 DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKY 539 (1230)
T ss_pred eehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCccCCC---CCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCC-cccccccchhhhhcccChhhHHHHH
Q 000114 1777 TFMYRRLTQNPNYYNLQG---VSHRHLSDHLSELVENTISDLEASKCIIIEEDM-DLSPSNHGMIASYYYISYTTIERFS 1852 (2158)
Q Consensus 1777 t~~yrRl~~nP~~Y~~~~---~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~-~~~~t~lG~i~s~y~I~~~T~~~f~ 1852 (2158)
||||.|+.+||-+||+.. ..+..+..++.+++..++..|.+.++|..|..+ .+.+|.+|++||+|||+|+||+.|+
T Consensus 540 TylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~n 619 (1230)
T KOG0952|consen 540 TYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFN 619 (1230)
T ss_pred eeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHH
Confidence 999999999999999974 355668899999999999999999999998644 5999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCChHHHHHHHHHHHhcCCCCC-CCchhhH
Q 000114 1853 SSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVG-GNLKLDQ 1931 (2158)
Q Consensus 1853 ~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqAhlsR~~lp-~~l~~D~ 1931 (2158)
+..++.++..++|.++|.|.||+.+.+|++|.+.|++|+...-.+..... .+.|+++|+|+|++|-++- ..|..|.
T Consensus 620 n~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~~~~---~~gk~nil~q~~Is~~~~~~f~L~sD~ 696 (1230)
T KOG0952|consen 620 NLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYPFGG---EKGKVNILLQAYISRTEVKDFSLMSDS 696 (1230)
T ss_pred hcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhcccccccccc---cchhHHHHHHhhhhccceeeeeeccCc
Confidence 98888999999999999999999999999999999999876443332211 2789999999999999886 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCC
Q 000114 1932 EEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEME 2011 (2158)
Q Consensus 1932 ~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~ 2011 (2158)
.++.+++.||.+|+.++....+|-..+.+++.|++||--.+|+...|++|++..-. ++ .+++ . .+..|.
T Consensus 697 ~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier~mw~~~~~l~qf~~~~~---~~-~~~~----~---~l~~L~ 765 (1230)
T KOG0952|consen 697 LYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIERRMWDFFIPLKQFTLLLN---RK-ERKK----L---TLLLLR 765 (1230)
T ss_pred ccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccc---hh-hhhc----c---hHHhhh
Confidence 99999999999999999999999887888999999999999999999999998766 23 2332 1 444444
Q ss_pred HHHHHHHhCCChHHHHHHHHHHccCCceEEEEEEeccccccCCCeEEEEEEEEEcCCCCcccCccccCCCCCCccccEEE
Q 000114 2012 DDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWL 2091 (2158)
Q Consensus 2012 ~~~r~~ll~~~~~~~~~v~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwl 2091 (2158)
.++..++....+ ...+.+..+|.++++..+... + -....+.+.+.++.++ .. .+|-+ . |-.+
T Consensus 766 ~~~~g~~w~~~~----~~~k~l~~ip~v~v~a~~~p~---t-~~vlri~~~~~~~f~w--~~-~~hg~---~----g~~i 827 (1230)
T KOG0952|consen 766 KDELGELWHNVP----YGLKQLSGIPLVNVEALIQPI---T-RNVLRIEVAITPDFEW--ND-GIHGK---A----GQPI 827 (1230)
T ss_pred hhhhccccccCc----hhhhhhccCCceehhhhhccc---h-hhhheeeeccCCceEE--ec-ccccc---c----Ccee
Confidence 455555544332 227899999999987665321 1 1233444444443222 11 23321 1 2228
Q ss_pred EEEECCCCeEEEEEEeeccc---ceEEEEEEEecC-CCCceEEEEEEEeCCccccCcEEEEEEE
Q 000114 2092 VVGDTKTNQLLAIKRVSLQR---KSRVKLDFAAPA-EAGKKTYTLYFMCDSYMGCDQEYAFTVD 2151 (2158)
Q Consensus 2092 vvgd~~~~~L~~~krv~~~~---~~~~~l~f~~P~-~~G~~~~~l~~~sDsY~G~D~~~~~~l~ 2151 (2158)
++.|...+.++.++...+.. ..+--+.|..|- .|=.-++..+..||.|+|++..+.+.+.
T Consensus 828 ~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~e~~~~~s~~ 891 (1230)
T KOG0952|consen 828 FKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGAETVYPLSFQ 891 (1230)
T ss_pred EeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCCceecccccc
Confidence 88898888999988766542 233455566663 3444578999999999999999998765
No 4
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=7.5e-101 Score=962.47 Aligned_cols=792 Identities=29% Similarity=0.496 Sum_probs=710.7
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC------CCceEEEEEcccHHHHHHHHHH
Q 000114 1336 YQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE------TGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1336 ~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~------~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
|.|...||++|+.+..+.+.+++|+++|||||+|||.+|++.|++.+..+.. -+.++++||+|+++||+++...
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999987532 1235999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHH
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~is 1489 (2158)
+.+++..+ |++|.++|||.....+.+..++|||+|||+||.+.|+...+...+-++++|+||+|++.++|||.+|.++.
T Consensus 384 fSkRla~~-GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVa 462 (1674)
T KOG0951|consen 384 FSKRLAPL-GITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVA 462 (1674)
T ss_pred HHhhcccc-CcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHH
Confidence 99888765 99999999999988889999999999999999999997777788899999999999999999999999999
Q ss_pred HHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHH
Q 000114 1490 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQ 1569 (2158)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~ 1569 (2158)
|+..-.......+|+||||||+||..|++.||++...++|.|.+++||+|+...+.+....+...++.+|+...|+.+.+
T Consensus 463 Rt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~ 542 (1674)
T KOG0951|consen 463 RTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLE 542 (1674)
T ss_pred HHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHH
Confidence 99988877788999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred hHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCC---cccchhhHhhhhHHHHHHHhcccEEEecCCCCHH
Q 000114 1570 HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP---AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646 (2158)
Q Consensus 1570 ~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~---~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~ 1646 (2158)
+ ....|+||||.||+++-.+|+.+...|...+...+ |+... .+-+........+..|++++.+|+++||+||+..
T Consensus 543 ~-agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~-fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~ 620 (1674)
T KOG0951|consen 543 H-AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSR-FMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRK 620 (1674)
T ss_pred h-CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHH-HHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcc
Confidence 9 44599999999999999999999887766554444 54332 2334445667788999999999999999999999
Q ss_pred HHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEec
Q 000114 1647 DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2158)
Q Consensus 1647 dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~ 1726 (2158)
+|..++++|++|.++|||+|.+++||||+|+++|||+||+.||+..++..+.++.+.+||.|||||+++|+.|..++.+.
T Consensus 621 dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 621 DRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITD 700 (1674)
T ss_pred hHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCccc-HHHHHH
Q 000114 1727 APRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRH-LSDHLS 1805 (2158)
Q Consensus 1727 ~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~-~~~~l~ 1805 (2158)
.++..||...+++.+|+||.+...|.|.+|+||+.| +++..|+++|+.+||+|.|+.+||.-|++....... +...-.
T Consensus 701 ~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~ 779 (1674)
T KOG0951|consen 701 HSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRA 779 (1674)
T ss_pred chHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHh
Confidence 999999999999999999999999999999999999 999999999999999999999999999998654443 444556
Q ss_pred HHHHHHHHHHHhCCCeeEcCCC-cccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchH
Q 000114 1806 ELVENTISDLEASKCIIIEEDM-DLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEE 1884 (2158)
Q Consensus 1806 ~lve~~l~~L~~~~~I~~~~~~-~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~ 1884 (2158)
+++++++..|.++|+|.++... .+++|.+|+|||+|||.+.+|..++..|.+.+..-++..+++.+.||..+++|.+|+
T Consensus 780 ~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek 859 (1674)
T KOG0951|consen 780 DLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEK 859 (1674)
T ss_pred hhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHH
Confidence 9999999999999999998643 599999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccCCCCCCChHHHHHHHHHHHhcCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000114 1885 EVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAME 1963 (2158)
Q Consensus 1885 ~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqAhlsR~~lp-~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~ 1963 (2158)
..|++|..++|++.. ..++.|..|+++|||+|+|++.+. ..|..|..+|-+.+.|+++|+.+|+..+||...+.-++.
T Consensus 860 ~el~~l~~~vpIpir-e~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~ 938 (1674)
T KOG0951|consen 860 MELAKLLERVPIPIR-ENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALN 938 (1674)
T ss_pred HHhhhhcccCCcCch-hccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHH
Confidence 999999999998875 468899999999999999999997 789999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccCCceEEEE
Q 000114 1964 VSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSF 2043 (2158)
Q Consensus 1964 L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~P~i~v~~ 2043 (2158)
+++|+.+.+|+...||.|+|+...+.++++..+. + .+..+.++++.+...+.+. +..+.-+..|+.+||++.+..
T Consensus 939 ~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~---~-~~~r~~~l~~~elg~lI~~-~k~G~~l~~~~~~fpk~s~~~ 1013 (1674)
T KOG0951|consen 939 LCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKE---L-PWGRYYDLDPAELGELIGV-PKMGKPLHLFIRQFPKLSVSA 1013 (1674)
T ss_pred hHhHhhhhcccccCchhhcCCCCHHHHHHHHhcc---C-cchhhhccCHHHHHHHhcC-cccChhHHHHHHhcccceeee
Confidence 9999999999999999999999999999998765 2 3556666777777776653 334566788999999999998
Q ss_pred EEeccccccCCCeEEEEEEEEEcCCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccceEEEEEEEecC
Q 000114 2044 EVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPA 2123 (2158)
Q Consensus 2044 ~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~~~~l~f~~P~ 2123 (2158)
.++. |+ -..+.+.++++.+.+++ ..||. -.|.+|+++.|....+|+...-+-+.+. ...+.|++|-
T Consensus 1014 ~vqp---it-r~~~~~~l~i~~~f~wd---~~vh~------~~e~F~i~ved~dge~il~~e~~~~~k~-~~~v~ft~~~ 1079 (1674)
T KOG0951|consen 1014 HVQP---IT-RSVYRVELTITPDFDWD---DKVHG------SVEPFWIIVEDTDGEKILHHEFFLLKKK-EHTVNFTVPL 1079 (1674)
T ss_pred eeee---ee-eeEEEEEEEEeecccch---hhhcc------cccceEEEEEccCccceeeeeeEEeccC-ceEEEEEeec
Confidence 8865 22 34566777777765442 24663 3478999999998889988776666544 6788888886
Q ss_pred CCCceEEEEEEEeCCccccCcEEEEEEE
Q 000114 2124 EAGKKTYTLYFMCDSYMGCDQEYAFTVD 2151 (2158)
Q Consensus 2124 ~~G~~~~~l~~~sDsY~G~D~~~~~~l~ 2151 (2158)
..|.-.|.+.++||-|+|..-.+++.|+
T Consensus 1080 ~~~pP~~fi~lvSd~wl~s~~~~Pvsfr 1107 (1674)
T KOG0951|consen 1080 FEPPPQYFIRLVSDRWLHSETVLPVSFR 1107 (1674)
T ss_pred CCCCCceEEEEeeccccCCCcccccchh
Confidence 6567789999999999999999999875
No 5
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5e-89 Score=924.61 Aligned_cols=663 Identities=26% Similarity=0.373 Sum_probs=563.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|+....+.+.. ||.+|+|+|++||+..+.+++|++++||||||||++|++|+++++.. ++ ++|||+|+++||.|
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~--kal~i~P~raLa~q 82 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GG--KALYIVPLRALASE 82 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CC--cEEEEeChHHHHHH
Confidence 34444455544 79999999999999977778899999999999999999999999864 44 89999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChH
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVL 1484 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~ 1484 (2158)
++++|+ +|+.. |++|+.++|+...+.+.+..++|+|+|||+|+.+++++ ..++++++++|+||+|++++ .+|+.+
T Consensus 83 ~~~~~~-~~~~~-g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~--~~~l~~v~lvViDE~H~l~d~~rg~~l 158 (737)
T PRK02362 83 KFEEFE-RFEEL-GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG--APWLDDITCVVVDEVHLIDSANRGPTL 158 (737)
T ss_pred HHHHHH-HhhcC-CCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcC--hhhhhhcCEEEEECccccCCCcchHHH
Confidence 999999 57653 89999999998877667778899999999999999863 34688999999999999987 589999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcC----
Q 000114 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT---- 1560 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~---- 1560 (2158)
|.++++++++ ....|+|+||||++|++++++|+++.. +.+.+||+++...+.......+......+.
T Consensus 159 e~il~rl~~~----~~~~qii~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~ 229 (737)
T PRK02362 159 EVTLAKLRRL----NPDLQVVALSATIGNADELADWLDAEL-----VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK 229 (737)
T ss_pred HHHHHHHHhc----CCCCcEEEEcccCCCHHHHHHHhCCCc-----ccCCCCCCCCeeeEecCCeeccccccccCCCccc
Confidence 9999999876 457899999999999999999998764 677889999987665333222222111121
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhh-------hHHHHHHHhc
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI-------QEEMLKATLR 1633 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i-------~d~~L~~~l~ 1633 (2158)
...+..+...+..++++||||+||+.|+.+|..|........ .......+..+.+.+ .+..|..++.
T Consensus 230 ~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 230 DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTL------TAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcC------CHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 344555555556789999999999999999999976543210 001112233333333 4567889999
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~ 1713 (2158)
.||++|||||++.+|..+++.|++|.++|||||++++||||+|+++|||.||++||+.. ++.|++..+|+||+|||||+
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999886 67899999999999999999
Q ss_pred CCCCceEEEEEecCC--hHHHHHHHhh-CCCccccch--hhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCC
Q 000114 1714 LLDNSGKCVILCHAP--RKEYYKKFLY-DAFPVESHL--HHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPN 1788 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~--~~~~~~k~l~-~~~piES~L--~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~ 1788 (2158)
|+|..|.|+++|.+. ..++|++|+. ++.|+||+| ...+.+|++++|+.|++.+++|+++|++|||||++.
T Consensus 383 g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~----- 457 (737)
T PRK02362 383 GLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT----- 457 (737)
T ss_pred CCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc-----
Confidence 999999999999875 4568899984 899999999 468999999999999999999999999999999842
Q ss_pred CccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCC--CHHHHHH
Q 000114 1789 YYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKT--RMKGLLE 1866 (2158)
Q Consensus 1789 ~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~--~~~~lL~ 1866 (2158)
+.+++++++|++++..|+++|||+.++ +.+.||++|+++|+|||+|.|+..|..+|+... +..++|+
T Consensus 458 ----------~~~~~l~~~v~~~l~~L~~~~~i~~~~-~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~ 526 (737)
T PRK02362 458 ----------DDTGRLERVVDDVLDFLERNGMIEEDG-ETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLH 526 (737)
T ss_pred ----------cchHHHHHHHHHHHHHHHHCCCeeecC-CeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHH
Confidence 235789999999999999999998753 469999999999999999999999999888765 6799999
Q ss_pred HHhcCccccCCCCCcchHHHHHHHh--------hcCccccCCCCCCC--hHHHHHHHHHHHhcCCCCCC-----Cc-hhh
Q 000114 1867 VLASASEYAQLPIRPGEEEVVRRLI--------HHQRFSFENPKFTD--PHVKANALLQAHFSRQQVGG-----NL-KLD 1930 (2158)
Q Consensus 1867 ils~a~Ef~~i~vR~~E~~~l~~L~--------~~~p~~~~~~~~~~--~~~K~~lLLqAhlsR~~lp~-----~l-~~D 1930 (2158)
+||.++||..+|+|++|+..+.++. .++|.++....+.. |++|+++|||+||+|.+++. .+ ..|
T Consensus 527 ~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gd 606 (737)
T PRK02362 527 LVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGD 606 (737)
T ss_pred HhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchH
Confidence 9999999999999999999998875 45666554434444 78999999999999998651 12 679
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcC
Q 000114 1931 QEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEM 2010 (2158)
Q Consensus 1931 ~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~ 2010 (2158)
++.+++++.||++|++++|.. +|+..+..+|+|+|||.||+|++++||+|||||+++++++|.+.| |+|++||+.+
T Consensus 607 l~~~~~~~~~l~~a~~~i~~~-~~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~g---i~s~~dl~~~ 682 (737)
T PRK02362 607 IRGKVETAEWLLHAAERLASE-LDLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAG---IESRADLRAA 682 (737)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcC---CCCHHHHHhC
Confidence 999999999999999999665 566778999999999999999999999999999999999999999 9999999999
Q ss_pred CHHHHHHHhCCChHHHHHHHHHHccC
Q 000114 2011 EDDERRELLQMSDVQLLDIARFCNRF 2036 (2158)
Q Consensus 2011 ~~~~r~~ll~~~~~~~~~v~~~~~~~ 2036 (2158)
++++...+ +++...++|.+.+..+
T Consensus 683 ~~~~l~~~--~g~~~~~~i~~~~~~~ 706 (737)
T PRK02362 683 DKSVVLAI--LGEKIAENILEQAGRR 706 (737)
T ss_pred CHHHHHHH--HCHHHHHHHHHHhCcc
Confidence 99999888 7777788888887744
No 6
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-86 Score=900.76 Aligned_cols=663 Identities=25% Similarity=0.366 Sum_probs=552.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
||+++.+.| .||++|+|+|++|++..+.+++|++++||||||||++|++|+++.+.. +.++||++|+
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----------~~kal~i~P~ 76 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----------GGKALYIVPL 76 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----------CCcEEEEeCh
Confidence 688999888 589999999999999877778899999999999999999999999853 2389999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
++||.|+++.|++ +..+|++|..++|+..........++|+|+|||+|+.+.|+.. .+++++++|||||+|++++ .
T Consensus 77 raLa~q~~~~~~~-~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~--~~l~~v~lvViDE~H~l~d~~ 153 (737)
T PRK02362 77 RALASEKFEEFER-FEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGA--PWLDDITCVVVDEVHLIDSAN 153 (737)
T ss_pred HHHHHHHHHHHHH-hhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcCh--hhhhhcCEEEEECccccCCCc
Confidence 9999999999996 4556999999999987766666788999999999999998753 5688999999999999988 7
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2158)
||+.+|.+++++.+ ..+.+|+|+||||++|.++++.|++.. .+...+||+++...+..............
T Consensus 154 rg~~le~il~rl~~----~~~~~qii~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~~~~~~ 223 (737)
T PRK02362 154 RGPTLEVTLAKLRR----LNPDLQVVALSATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGAIHFDDSQRE 223 (737)
T ss_pred chHHHHHHHHHHHh----cCCCCcEEEEcccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCeecccccccc
Confidence 99999999998854 356789999999999999999999865 25778899998765432111000000000
Q ss_pred hh----HHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchh-HHH---HHhhhhccCcchh
Q 000114 719 MN----DLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS-REI---LQSHTDMVKSNDL 789 (2158)
Q Consensus 719 l~----~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~-~~~---l~~~~~~~~~~~l 789 (2158)
+. ...+..+.+. ..++++||||+||+.|+.+|..|....... +...+... .+. +........+..|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 224 VEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKT-----LTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred CCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 00 1122223322 247899999999999999999998754221 00000000 011 1111222356789
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhc
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2158)
..++..||++|||||++.+|..+++.|++|.++|||||++++||||+|+++|||+++..||+.. ++.+++..+|+||+|
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Qm~G 377 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQMAG 377 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999876 578999999999999
Q ss_pred ccCCCCCCCccEEEEEcCCCc--HHHHHHhh-cCCCcccchhh--HhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHh
Q 000114 870 RAGRPQYDSYGEGIIITGHSE--LRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (2158)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~--~~~y~~ll-~~~~pieS~l~--~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~ 944 (2158)
||||+|+|..|.+++++...+ ..+|.+++ ..+.|++|+|. ..|.+++|+||+.|++.+.+|+++|++|||+|++.
T Consensus 378 RAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~ 457 (737)
T PRK02362 378 RAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT 457 (737)
T ss_pred cCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc
Confidence 999999999999999998753 34577776 58899999995 47999999999999999999999999999999752
Q ss_pred hcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCC
Q 000114 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (2158)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~ 1024 (2158)
. ..+++.++|++++..|.++|||+.+ ++.+.+|++|+++|+|||+|.|+..|.+.|+...
T Consensus 458 ----------~--------~~~~l~~~v~~~l~~L~~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~ 517 (737)
T PRK02362 458 ----------D--------DTGRLERVVDDVLDFLERNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLEAAK 517 (737)
T ss_pred ----------c--------chHHHHHHHHHHHHHHHHCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcc
Confidence 0 1245678999999999999999975 3679999999999999999999999999888764
Q ss_pred --CHHHHHHHhhCCccCCCCcCChhHHHHHHHHh--------hcCCCCCCCC-CCC--hhHHHHHHHHHHHcCCCC----
Q 000114 1025 --GDIELCRLFSLSEEFKYVTVRQDEKMELAKLL--------DRVPIPVKES-LEE--PSAKINVLLQAYISQLKL---- 1087 (2158)
Q Consensus 1025 --~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~--------~~~~~~~~~~-~~~--~~~K~~~llq~~i~~~~~---- 1087 (2158)
+..++|+++|.++||..+++|++|...|.++. .++|.+..+. ++. +..|+++|||+||++.++
T Consensus 518 ~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~ 597 (737)
T PRK02362 518 KPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERIT 597 (737)
T ss_pred cCchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 78999999999999999999999999998875 4556554432 233 788999999999999996
Q ss_pred CCCcc-cchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-Cc
Q 000114 1088 EGLSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AW 1165 (2158)
Q Consensus 1088 ~~~~l-~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~ 1165 (2158)
+.|++ .+|+..++++|.||++|+++||.. +|..++..+++|++|+.+++|++.+||.|+||++++++++|++.|+ ++
T Consensus 598 ~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~-~~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~gi~s~ 676 (737)
T PRK02362 598 ERYGVGPGDIRGKVETAEWLLHAAERLASE-LDLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAGIESR 676 (737)
T ss_pred HHhCCCchHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcCCCCH
Confidence 35777 589999999999999999999876 4557899999999999999999999999999999999999999998 67
Q ss_pred hhhccCChHHhhhhhcCchhHHHHHHHHhcC
Q 000114 1166 ERYYDLSPQELGELIRFPKMGRTLHKFVHQF 1196 (2158)
Q Consensus 1166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 1196 (2158)
+++..+++++|..+++ ++.++.|.+.+..+
T Consensus 677 ~dl~~~~~~~l~~~~g-~~~~~~i~~~~~~~ 706 (737)
T PRK02362 677 ADLRAADKSVVLAILG-EKIAENILEQAGRR 706 (737)
T ss_pred HHHHhCCHHHHHHHHC-HHHHHHHHHHhCcc
Confidence 8888889999999987 68888888887744
No 7
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=7e-86 Score=891.79 Aligned_cols=654 Identities=26% Similarity=0.399 Sum_probs=543.4
Q ss_pred ChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1328 ~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
+....+.+.. ||..|+|+|++||+..+.+++|++++||||||||++|++|+++++.. .++ ++|||+|+++|+.|+
T Consensus 9 ~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~--~~l~l~P~~aLa~q~ 84 (720)
T PRK00254 9 DERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGG--KAVYLVPLKALAEEK 84 (720)
T ss_pred CHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCC--eEEEEeChHHHHHHH
Confidence 3444444444 79999999999999876678899999999999999999999998875 244 999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHH
Q 000114 1407 YRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLE 1485 (2158)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e 1485 (2158)
+++|+ .|.. .|++|..++|+...+.+.+..++|+|+|||+|+.++++ ...+++++++||+||+|++++ .+|+.++
T Consensus 85 ~~~~~-~~~~-~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~~rg~~le 160 (720)
T PRK00254 85 YREFK-DWEK-LGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSYDRGATLE 160 (720)
T ss_pred HHHHH-HHhh-cCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCccchHHHH
Confidence 99998 4654 48999999999887766677889999999999999885 234688999999999999987 5799999
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEE--EecccccchHHH---HHhcC
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH--IQGVDITNFEAR---MQAMT 1560 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~--i~~~~~~~~~~~---~~~~~ 1560 (2158)
.+++++ ..+.|+|++|||++|++++++|+++.. +.+..||+++... ..++........ ...+.
T Consensus 161 ~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (720)
T PRK00254 161 MILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL-----VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWE 228 (720)
T ss_pred HHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc-----ccCCCCCCcceeeEecCCeeeccCcchhcchHHHH
Confidence 888765 346899999999999999999998763 5677899988543 222221111000 11122
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCC-cccchhhHhh----hhHHHHHHHhccc
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP-AEEVEPFIDN----IQEEMLKATLRHG 1635 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~-~~~l~~~~~~----i~d~~L~~~l~~g 1635 (2158)
. .+...+..++++||||+||+.|+.+|..|+..+.. ++..+ ...+..+.+. ..+..|++++..|
T Consensus 229 ~----~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g 297 (720)
T PRK00254 229 S----LVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKR-------FLTKPELRALKELADSLEENPTNEKLKKALRGG 297 (720)
T ss_pred H----HHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHH-------hcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhC
Confidence 2 23333456889999999999999999988765431 22111 1223333332 3457788899999
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1636 v~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
|++|||||++++|..+++.|++|.++|||||++++||||+|++.|||+++++|++ ..+.++++.+|+||+|||||+|+
T Consensus 298 v~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 298 VAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999973 35678899999999999999999
Q ss_pred CCceEEEEEecCCh-HHHHHHHhh-CCCccccch--hhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCcc
Q 000114 1716 DNSGKCVILCHAPR-KEYYKKFLY-DAFPVESHL--HHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYN 1791 (2158)
Q Consensus 1716 d~~G~~iil~~~~~-~~~~~k~l~-~~~piES~L--~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~ 1791 (2158)
|..|.|++++...+ +++|++|+. +|.++.|.+ ...|.+|++++|+.+++.++||+++||+|||||+ +||+||+
T Consensus 376 d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~~~~~~ 452 (720)
T PRK00254 376 DEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QRKDLYS 452 (720)
T ss_pred CCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hhcChHh
Confidence 99999999998765 567888854 455555555 2456899999999999999999999999999996 6899986
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCC---CCCHHHHHHHH
Q 000114 1792 LQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTP---KTRMKGLLEVL 1868 (2158)
Q Consensus 1792 ~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~---~~~~~~lL~il 1868 (2158)
+ .+++++++..|.+++||++++++.+.||++|+++|+|||+|.|+..|...++. +++..++|++|
T Consensus 453 ~------------~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~ 520 (720)
T PRK00254 453 L------------EEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLI 520 (720)
T ss_pred H------------HHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHh
Confidence 4 36899999999999999998777899999999999999999999999988876 67899999999
Q ss_pred hcCccccCCCCCcchHHHHH--------HHhhcCccccCCCCCCC--hHHHHHHHHHHHhcCCCCCCCc------hhhHH
Q 000114 1869 ASASEYAQLPIRPGEEEVVR--------RLIHHQRFSFENPKFTD--PHVKANALLQAHFSRQQVGGNL------KLDQE 1932 (2158)
Q Consensus 1869 s~a~Ef~~i~vR~~E~~~l~--------~L~~~~p~~~~~~~~~~--~~~K~~lLLqAhlsR~~lp~~l------~~D~~ 1932 (2158)
|.|+||..+|+|++|+..+. ++..++|++.+. .+.+ |++|+++|||+||+|.+++..+ ..|++
T Consensus 521 ~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~ 599 (720)
T PRK00254 521 ASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDY-KFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLY 599 (720)
T ss_pred hCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhh-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHH
Confidence 99999999999999998888 344445543321 2333 7899999999999999998766 89999
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHh
Q 000114 1933 EVLLSASRLLQAMVDVISS----NGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLV 2008 (2158)
Q Consensus 1933 ~Il~~~~rLl~a~vdi~~~----~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~ 2008 (2158)
.+++++.||++||+++++. .+|++ ++. +|+|||+||+|+++++|.|||||++..+++|.++| +.|++|++
T Consensus 600 ~~~~~~~~l~~a~~~i~~~~~~~~~~~~-~l~--~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g---~~s~~~i~ 673 (720)
T PRK00254 600 RILELADWLMYSLIELYKLFEPKQEVLD-YLE--TLHLRVKHGVREELLELMRLPMIGRKRARALYNAG---FRSIEDIV 673 (720)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhHHH-HHH--HHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHcc---CCCHHHHH
Confidence 9999999999999999994 44554 443 89999999999999999999999999999999999 99999999
Q ss_pred cCCHHHHHHHhCCChHHHHHHHHHHccC
Q 000114 2009 EMEDDERRELLQMSDVQLLDIARFCNRF 2036 (2158)
Q Consensus 2009 ~~~~~~r~~ll~~~~~~~~~v~~~~~~~ 2036 (2158)
++++++..++.++++...+.|.++++..
T Consensus 674 ~a~~~el~~~~gi~~~~a~~i~~~~~~~ 701 (720)
T PRK00254 674 NAKPSELLKVEGIGAKIVEGIFKHLGVE 701 (720)
T ss_pred hCCHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 9999999998889999999999998844
No 8
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.2e-83 Score=863.08 Aligned_cols=658 Identities=26% Similarity=0.374 Sum_probs=533.8
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+|+.+.+.+ .||++|||+|.++++..+.+++|++++||||||||++|++|+++.+... +.++|||+|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~l~l~P~ 77 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKAVYLVPL 77 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeEEEEeCh
Confidence 577788877 6999999999999998777778999999999999999999999987642 2489999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
++|+.|+++.|.. +..+|++|..++|+..........++|+|+|||+|+.+.++.. .+++++++|||||+|++.+ .
T Consensus 78 ~aLa~q~~~~~~~-~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~--~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 78 KALAEEKYREFKD-WEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred HHHHHHHHHHHHH-HhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc--hhhhcCCEEEEcCcCccCCcc
Confidence 9999999999987 4567999999999988766666789999999999998888643 5689999999999999987 6
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEe-----eccCChh
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-----IQVKKPL 713 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~-----~~~~~~~ 713 (2158)
||+.++.+++++ ...+|+|++|||++|..+++.|++... +...+||+++...... .......
T Consensus 155 rg~~le~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~------~~~~~rpv~l~~~~~~~~~~~~~~~~~~ 221 (720)
T PRK00254 155 RGATLEMILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL------VVSDWRPVKLRKGVFYQGFLFWEDGKIE 221 (720)
T ss_pred chHHHHHHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc------ccCCCCCCcceeeEecCCeeeccCcchh
Confidence 999999998875 356899999999999999999998642 5667899988643221 1111111
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCc-hh-HHHHHhhhhccCcchhhh
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS-VS-REILQSHTDMVKSNDLKD 791 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~l~~ 791 (2158)
.....+...+++.+. .++++||||+||+.|+.+|..|...... ++.... .. .+..........+..|++
T Consensus 222 ~~~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 292 (720)
T PRK00254 222 RFPNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKR------FLTKPELRALKELADSLEENPTNEKLKK 292 (720)
T ss_pred cchHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHhcCCCcHHHHH
Confidence 111334444444443 3679999999999999999998765321 111110 00 111111122345678999
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhccc
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2158)
++..||++|||||++++|..+++.|++|.++|||||++++||||+|+++|||+++..|+. .++.++++.+|+||+|||
T Consensus 293 ~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 293 ALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRA 370 (720)
T ss_pred HHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999998862 357789999999999999
Q ss_pred CCCCCCCccEEEEEcCCCc-HHHHHHhh-cCCCcccchhh--HhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcC
Q 000114 872 GRPQYDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (2158)
Q Consensus 872 GR~g~d~~G~~iil~~~~~-~~~y~~ll-~~~~pieS~l~--~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~n 947 (2158)
||+|+|..|.+++++...+ ..+|.+++ ..+.++.|.+. +.|.++++++|+.|++.+.+|+++||+|||+|. +|
T Consensus 371 GR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~ 447 (720)
T PRK00254 371 GRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QR 447 (720)
T ss_pred CCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hh
Confidence 9999999999999998765 35566653 23334444443 356899999999999999999999999999995 46
Q ss_pred CcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCC---CC
Q 000114 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP---TM 1024 (2158)
Q Consensus 948 p~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~---~~ 1024 (2158)
|.+|++ .+++++++..|.+++||+.+. ++.+.+|++|+++|+|||+|.|+..|.+.++. .+
T Consensus 448 ~~~~~~---------------~~~v~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~ 511 (720)
T PRK00254 448 KDLYSL---------------EEKAKEIVYFLLENEFIDIDL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNP 511 (720)
T ss_pred cChHhH---------------HHHHHHHHHHHHHCCCeEEcC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCC
Confidence 766642 246788999999999999864 46799999999999999999999999998876 67
Q ss_pred CHHHHHHHhhCCccCCCCcCChhHHHHHHHH--------hhcCCCCCCCCCCC--hhHHHHHHHHHHHcCCCCC----CC
Q 000114 1025 GDIELCRLFSLSEEFKYVTVRQDEKMELAKL--------LDRVPIPVKESLEE--PSAKINVLLQAYISQLKLE----GL 1090 (2158)
Q Consensus 1025 ~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l--------~~~~~~~~~~~~~~--~~~K~~~llq~~i~~~~~~----~~ 1090 (2158)
+..++|+++|.++||..+++|++|...|..+ ..++|.+....+.. +..|+++|||+||++.+++ .|
T Consensus 512 ~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~ 591 (720)
T PRK00254 512 NPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETY 591 (720)
T ss_pred CHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 8899999999999999999999999888843 33334322122233 7899999999999999873 34
Q ss_pred ccc-chHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-Cchh
Q 000114 1091 SLT-SDMVFITQSAGRLLRALFEIVLKRGWA-QLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWER 1167 (2158)
Q Consensus 1091 ~l~-~d~~~i~~~a~ri~~a~~ei~~~~~~~-~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~ 1167 (2158)
+.. +|+..++++|.||++|+++|+...||. .....+.+|++||.||+|.+++||.|+||+|++++++|.++|+ ++++
T Consensus 592 ~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~~ 671 (720)
T PRK00254 592 NIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLPMIGRKRARALYNAGFRSIED 671 (720)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHccCCCHHH
Confidence 444 899999999999999999999977763 3333445899999999999999999999999999999999998 7888
Q ss_pred hccCChHHhhhhhcC-chhHHHHHHHHhc
Q 000114 1168 YYDLSPQELGELIRF-PKMGRTLHKFVHQ 1195 (2158)
Q Consensus 1168 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 1195 (2158)
+..+++++|..+.+. ++.++.|++.++.
T Consensus 672 i~~a~~~el~~~~gi~~~~a~~i~~~~~~ 700 (720)
T PRK00254 672 IVNAKPSELLKVEGIGAKIVEGIFKHLGV 700 (720)
T ss_pred HHhCCHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 888899999988443 5778888888773
No 9
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.2e-82 Score=853.75 Aligned_cols=641 Identities=25% Similarity=0.339 Sum_probs=535.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|++...+.+.. +|. ++|+|.+|++.+.. ++|++++||||||||++|++++++.+.. ++ ++||++|+++||.|
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~-~~nvlv~apTGSGKTl~a~lail~~l~~---~~--k~v~i~P~raLa~q 80 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQLRK-GENVIVSVPTAAGKTLIAYSAIYETFLA---GL--KSIYIVPLRSLAME 80 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHHhc-CCcEEEECCCCchHHHHHHHHHHHHHHh---CC--cEEEEechHHHHHH
Confidence 33333333333 465 99999999999854 6789999999999999999999998865 44 89999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChH
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVL 1484 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~ 1484 (2158)
++++|++ +.. .|.+|..++|+...+...+..++|+|+|||+|+.++++|. ..+++++++|+||+|++++ .+|+.+
T Consensus 81 ~~~~~~~-l~~-~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~rg~~l 156 (674)
T PRK01172 81 KYEELSR-LRS-LGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDEDRGPTL 156 (674)
T ss_pred HHHHHHH-Hhh-cCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCCccHHH
Confidence 9999984 544 4889999999887766666788999999999999998864 4589999999999999986 579999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHH
Q 000114 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~ 1564 (2158)
+.++++++++ +.+.|+|++|||++|..++++|+++.. +.+..||+|+...+........... ........
T Consensus 157 e~ll~~~~~~----~~~~riI~lSATl~n~~~la~wl~~~~-----~~~~~r~vpl~~~i~~~~~~~~~~~-~~~~~~~~ 226 (674)
T PRK01172 157 ETVLSSARYV----NPDARILALSATVSNANELAQWLNASL-----IKSNFRPVPLKLGILYRKRLILDGY-ERSQVDIN 226 (674)
T ss_pred HHHHHHHHhc----CcCCcEEEEeCccCCHHHHHHHhCCCc-----cCCCCCCCCeEEEEEecCeeeeccc-ccccccHH
Confidence 9999988866 457999999999999999999998764 6678899998876543321111000 00011123
Q ss_pred HHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCC
Q 000114 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (2158)
Q Consensus 1565 ~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~ 1644 (2158)
..+......++++||||+|+++|+.+|..|...+..... +.... + .....+..+++++.+||++|||||+
T Consensus 227 ~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~----~~~~~-~-----~~~~~~~~L~~~l~~gv~~~hagl~ 296 (674)
T PRK01172 227 SLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFND----FKVSS-E-----NNNVYDDSLNEMLPHGVAFHHAGLS 296 (674)
T ss_pred HHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhccc----ccccc-c-----ccccccHHHHHHHhcCEEEecCCCC
Confidence 334444467889999999999999999999775432211 10000 0 1223456788899999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEE
Q 000114 1645 KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2158)
Q Consensus 1645 ~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil 1724 (2158)
.++|..+++.|++|.++|||||++++||+|+|++.|||+++++|++.. ..++|..+|.||+|||||+|+|..|.++++
T Consensus 297 ~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~--~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 297 NEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGG--IRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred HHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCC--ceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 999999999999999999999999999999999999999999998753 357899999999999999999999999999
Q ss_pred ecCCh-HHHHHHHh-hCCCccccchhhHHHHH--HHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccH
Q 000114 1725 CHAPR-KEYYKKFL-YDAFPVESHLHHFLHDN--FNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHL 1800 (2158)
Q Consensus 1725 ~~~~~-~~~~~k~l-~~~~piES~L~~~l~d~--l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~ 1800 (2158)
+...+ .+++++|+ .++.|+||+|.....++ ++++|+.|++.+++|+++|++|||||++ |+
T Consensus 375 ~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~------------- 438 (674)
T PRK01172 375 AASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG------------- 438 (674)
T ss_pred ecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc-------------
Confidence 88765 67899998 69999999997655454 4599999999999999999999999983 32
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCC
Q 000114 1801 SDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIR 1880 (2158)
Q Consensus 1801 ~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR 1880 (2158)
+++++++|+++++.|.++|||+. ++.+.||++|+++|+||++|.|+..|..+++..++..++|++||.|+|| +|+|
T Consensus 439 ~~~l~~~v~~~l~~L~~~~~i~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e~--~~~~ 514 (674)
T PRK01172 439 VDEIDYYIESSLKFLKENGFIKG--DVTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCREI--IPAN 514 (674)
T ss_pred hHHHHHHHHHHHHHHHHCCCccc--CCcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCccc--cccc
Confidence 35789999999999999999963 3469999999999999999999999999999999999999999999999 8999
Q ss_pred cchHHHHHHHhhcCccccCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000114 1881 PGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALL 1960 (2158)
Q Consensus 1881 ~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqAhlsR~~lp~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~ 1960 (2158)
++|+..+.++...+|. .....|+.|+++|||||++|.+++. +..++..++.+++++ +.+.+|+..++.
T Consensus 515 ~~~~~~~~~~~~~~~~----~~~~~~~~k~~~ll~~~~~~~~~~~-----i~~~~~~~~g~l~~~---~~~~~~~~~a~~ 582 (674)
T PRK01172 515 TRDDYYAMEFLEDIGV----IDGDISAAKTAMVLRGWISEASMQK-----ITDTYGIAPGDVQAR---ASSADWISYSLA 582 (674)
T ss_pred cchHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHcCCCHHH-----HHHHhCCChHHHHHH---HHHHHHHHHHHH
Confidence 9999888888877764 1345689999999999999999864 555667777777777 366677766666
Q ss_pred H------HHHHHH-------HHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHH
Q 000114 1961 A------MEVSQM-------VTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLL 2027 (2158)
Q Consensus 1961 ~------m~L~q~-------i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~ 2027 (2158)
. |+++|| |+||+|++++||+|||||++.++++|.++| ++|++||+++++++|.+++++++.+.+
T Consensus 583 ~~~~~~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g---~~~~~di~~~~~~~~~~i~~~~~~~~~ 659 (674)
T PRK01172 583 RLSSIYKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAG---FKTVDDIARSSPERIKKIYGFSDTLAN 659 (674)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHHHhccCHHHHH
Confidence 6 788888 999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHcc
Q 000114 2028 DIARFCNR 2035 (2158)
Q Consensus 2028 ~v~~~~~~ 2035 (2158)
+|.+.++.
T Consensus 660 ~i~~~~~~ 667 (674)
T PRK01172 660 AIVNRAMK 667 (674)
T ss_pred HHHHHHHH
Confidence 99888764
No 10
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.2e-84 Score=851.14 Aligned_cols=738 Identities=35% Similarity=0.479 Sum_probs=621.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+++.+...+ .++.++++.|+.++...+.+++|+|||||||||||++|+++|++.+.++ +.|+|||||+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------~~k~vYivPl 85 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------GGKVVYIVPL 85 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------CCcEEEEeCh
Confidence 455556666 4566677766667666666689999999999999999999999999874 3489999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccC-
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN- 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~- 638 (2158)
||||.|++++|+ ++..+|++|+..|||.+.....+.+++|+|+||||||+++|+... ++..|++|||||+|+++|.
T Consensus 86 kALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 86 KALAEEKYEEFS-RLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHHhh-hHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcc
Confidence 999999999999 788899999999999999998999999999999999999999874 8999999999999999996
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2158)
||+++|.|++|+++. ...+||||||||+||+++++.|+++++....+.+.+.+|+++..+.+.+...... ..-..
T Consensus 163 RG~~lE~iv~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~ 237 (766)
T COG1204 163 RGPVLESIVARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLL 237 (766)
T ss_pred cCceehhHHHHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-ccccc
Confidence 999999999999653 4459999999999999999999999987788999999999999999888776544 22223
Q ss_pred hhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCe
Q 000114 719 MNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2158)
Q Consensus 719 l~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv 797 (2158)
....++..+.+... ++|+|||||||+.|..+|+.+............+...+....++...+.....+..|+++++.|+
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 34455666666555 78999999999999999999996433222111111111222222223344455689999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC
Q 000114 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2158)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2158)
++|||||++++|..+++.|++|.++|||||+|||||||+|+.+|||+++..|++. +++.++++.|++||+|||||||+|
T Consensus 318 afHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~-~g~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPK-GGIVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred cccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCC-CCeEECchhhHhhccCcCCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999994 459999999999999999999999
Q ss_pred CccEEEEEc-CCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCcc
Q 000114 878 SYGEGIIIT-GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPE 956 (2158)
Q Consensus 878 ~~G~~iil~-~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~ 956 (2158)
..|.+++++ +..+..++.+...++.|.+ +.+.|.+..|++..++++.+..++++|+.+||+|.|++.+|..|+...
T Consensus 397 ~~G~~~i~~~~~~~~~~~~~~~~~~~~e~--~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~- 473 (766)
T COG1204 397 DYGEAIILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGM- 473 (766)
T ss_pred CCCcEEEEecCccchhHHHHHhhccCcch--HHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccc-
Confidence 999999999 5566667777666666654 666677777999999999999999999999999999999999987622
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCC---CHHHHHHHh
Q 000114 957 VLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM---GDIELCRLF 1033 (2158)
Q Consensus 957 ~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~---~~~~~l~~~ 1033 (2158)
....+..++..|.+++++ .+.....+.+|++|+.+|+|||++.|+..|.+.+.... +..+++.++
T Consensus 474 -----------~~~~i~~~~~~L~~~~~~-~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~i 541 (766)
T COG1204 474 -----------LREEILASLRYLEENGLI-LDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLI 541 (766)
T ss_pred -----------hHHHHHHHHHHHHhccce-eeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhh
Confidence 124678889999998722 33446789999999999999999999999999776554 889999999
Q ss_pred hCCccCCCCcCChhHHHHH--HHHhhcCCCCCCCCCCChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHH
Q 000114 1034 SLSEEFKYVTVRQDEKMEL--AKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALF 1111 (2158)
Q Consensus 1034 s~~~ef~~i~~r~~e~~~l--~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ 1111 (2158)
|.++||..+++|.++..++ ..+.+..++...+...++..|.+.++|++.+...+.+|....|..+|.++.++...+++
T Consensus 542 s~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~ 621 (766)
T COG1204 542 SLTPDLMPIKLRERESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLL 621 (766)
T ss_pred hcCccchhhhhhhhhhhhhhHHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHH
Confidence 9999999999999999886 45556677777776778889999999999999999989999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCCCchhhccCCh-HHhhhhhcCchhHHHHH
Q 000114 1112 EIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSP-QELGELIRFPKMGRTLH 1190 (2158)
Q Consensus 1112 ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 1190 (2158)
.++....|. .+. ++.|++++.++.|....++.|+ .++..+..+++ .|..-+++.++.. ..++. ++..+.....+
T Consensus 622 ~~~~~a~w~-~~~-~~~l~~~~~r~~~~~~~~~~~~-~~~~~~~~rie-~gv~~e~~~~l~~i~~~gr-vrar~ly~~g~ 696 (766)
T COG1204 622 RIAETAEWL-SAD-LLALGKAAERLAKILGLGLHVL-RKLEILSLRIE-YGVRSEELLELVEIRGVGR-VRARKLYNAGY 696 (766)
T ss_pred hhcchhhhh-hhh-hhhhhhhhhhhHhhhCCCcccc-ccchhhhhhhh-cCCChhhhcccccccccch-hHHHHHHHhhh
Confidence 999999999 555 9999999999999999999999 77777777775 4443256666643 33343 66677888888
Q ss_pred HHHhcCCcceEEEEEeeccCceEEEEEEEecCCcccCCCCCCcccEEEEEEeCCCCeEeeeehhhhhc
Q 000114 1191 KFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKK 1258 (2158)
Q Consensus 1191 ~~~~~~P~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~i~~~~~~~l~~ 1258 (2158)
+.++.+|.....+.+.|+++...++.-.|.+.+.|....|+..+.||..+.+.++..++|.+.+.+..
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (766)
T COG1204 697 KSLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVLLSGRAYFFSIEVRELDLLYVLHEEALILAG 764 (766)
T ss_pred ccHHHHHhhcChhhhhhhhhhHHHHHHHHHHHhhhhhhcccchhhhcccCccccccceecchhhccCC
Confidence 88899998888888888888777777788899999999999999999999999999999998877643
No 11
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.1e-78 Score=816.64 Aligned_cols=643 Identities=24% Similarity=0.347 Sum_probs=530.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
||+.+.+.+ .+|+ |+++|.++++.+ .+++|++++||||||||++|++++++.+..+ .++||++|+
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l-~~~~nvlv~apTGSGKTl~a~lail~~l~~~-----------~k~v~i~P~ 74 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQL-RKGENVIVSVPTAAGKTLIAYSAIYETFLAG-----------LKSIYIVPL 74 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHH-hcCCcEEEECCCCchHHHHHHHHHHHHHHhC-----------CcEEEEech
Confidence 677777777 4565 999999999986 5557899999999999999999999987642 379999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
++||.|+++.|++ +...|++|..++|+..........++|+|+|||+|+.+.+++. .+++++++|||||+|++++ .
T Consensus 75 raLa~q~~~~~~~-l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~ 151 (674)
T PRK01172 75 RSLAMEKYEELSR-LRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDED 151 (674)
T ss_pred HHHHHHHHHHHHH-HhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCC
Confidence 9999999999987 4457899999999987766666788999999999999988764 5688999999999999987 7
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCC--hhHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK--PLQRF 716 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~--~~~~~ 716 (2158)
||+.++.++.++.. ..+++|+|++|||++|..+++.|++... +...+||+|+...+....... ...+.
T Consensus 152 rg~~le~ll~~~~~----~~~~~riI~lSATl~n~~~la~wl~~~~------~~~~~r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 152 RGPTLETVLSSARY----VNPDARILALSATVSNANELAQWLNASL------IKSNFRPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred ccHHHHHHHHHHHh----cCcCCcEEEEeCccCCHHHHHHHhCCCc------cCCCCCCCCeEEEEEecCeeeecccccc
Confidence 99999999887643 3567999999999999999999998642 567889999876543221100 00000
Q ss_pred HHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccC
Q 000114 717 QLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (2158)
.. .+...+.+. ..++++||||+||+.|+.+|..|.......... . +........+..|+++++.
T Consensus 222 ~~---~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~---~---------~~~~~~~~~~~~L~~~l~~ 286 (674)
T PRK01172 222 QV---DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDF---K---------VSSENNNVYDDSLNEMLPH 286 (674)
T ss_pred cc---cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccc---c---------ccccccccccHHHHHHHhc
Confidence 00 011222222 347899999999999999999998764322111 0 0001123346778999999
Q ss_pred CeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCC
Q 000114 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2158)
Q Consensus 796 gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2158)
||++|||||++++|..+++.|++|.++|||||++++||||+|++.|||.++..|+.. ...++|+.+|.||+|||||+|
T Consensus 287 gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~--~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 287 GVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNG--GIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCC--CceeCCHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999988777653 346799999999999999999
Q ss_pred CCCccEEEEEcCCCc-HHHHHHhh-cCCCcccchhhHhh--HHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCccc
Q 000114 876 YDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFVSKL--ADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALY 951 (2158)
Q Consensus 876 ~d~~G~~iil~~~~~-~~~y~~ll-~~~~pieS~l~~~l--~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y 951 (2158)
+|..|.+++++...+ .++|.+++ +.+.|+||++.... ..+++++|+.|.+.+.+|+++|++|||+|++ |+
T Consensus 365 ~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~--- 438 (674)
T PRK01172 365 YDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG--- 438 (674)
T ss_pred CCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc---
Confidence 999999999987654 67788877 78999999998654 4455599999999999999999999999973 21
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHH
Q 000114 952 GLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCR 1031 (2158)
Q Consensus 952 ~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~ 1031 (2158)
.+++.++|++|++.|.++|||+.+ +.+.+|++|++||+|||+|.|+..|.+.++..++..++|.
T Consensus 439 -------------~~~l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~ 502 (674)
T PRK01172 439 -------------VDEIDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALY 502 (674)
T ss_pred -------------hHHHHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHH
Confidence 124567899999999999999743 5699999999999999999999999999999999999999
Q ss_pred HhhCCccCCCCcCChhHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHcCCCC----CCCccc-chHHHHHHHHHHH
Q 000114 1032 LFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKL----EGLSLT-SDMVFITQSAGRL 1106 (2158)
Q Consensus 1032 ~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~----~~~~l~-~d~~~i~~~a~ri 1106 (2158)
++|.++|| +|+|..|...+.++.++++.. ....++.|+++|||+||+|.++ +.|... +|+..++++++|+
T Consensus 503 ~~~~~~e~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~ 577 (674)
T PRK01172 503 YISLCREI--IPANTRDDYYAMEFLEDIGVI---DGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWI 577 (674)
T ss_pred HhhcCccc--cccccchHHHHHHHHHHhccc---cchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 99999999 888888888888888877641 2346889999999999999997 345555 7999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcCc-h
Q 000114 1107 LRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-K 1184 (2158)
Q Consensus 1107 ~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~ 1184 (2158)
.+|+..++.. +|..++..+-.|.++|.+|+|++.+||.|+|||+++++++|+++|+ ++.++.+++++++.+++++. +
T Consensus 578 ~~a~~~~~~~-~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~ 656 (674)
T PRK01172 578 SYSLARLSSI-YKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDT 656 (674)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHH
Confidence 9999999876 5566777777888889999999999999999999999999999998 78888888999999998753 4
Q ss_pred hHHHHHHHHhc
Q 000114 1185 MGRTLHKFVHQ 1195 (2158)
Q Consensus 1185 ~~~~i~~~~~~ 1195 (2158)
..+.|.+.++.
T Consensus 657 ~~~~i~~~~~~ 667 (674)
T PRK01172 657 LANAIVNRAMK 667 (674)
T ss_pred HHHHHHHHHHH
Confidence 55666655543
No 12
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=6e-68 Score=697.32 Aligned_cols=648 Identities=28% Similarity=0.381 Sum_probs=502.7
Q ss_pred hHHHHHhc--CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1330 PLYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1330 ~~~~~l~~--gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
+.+..++. ++.+++|.|+.++...+.+++|+|||||||||||++|+++|++.+.+. ++ ++|||||+++||.|++
T Consensus 18 ~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~--k~vYivPlkALa~Ek~ 93 (766)
T COG1204 18 DRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GG--KVVYIVPLKALAEEKY 93 (766)
T ss_pred HHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CC--cEEEEeChHHHHHHHH
Confidence 34555665 365666666666666555589999999999999999999999999873 34 9999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHH
Q 000114 1408 RDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEV 1486 (2158)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~ 1486 (2158)
++|+ +|... |++|+..|||.....+.+..++|||+|||+|++++|++.. ++..|++|||||+|++++. ||+++|.
T Consensus 94 ~~~~-~~~~~-GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE~ 169 (766)
T COG1204 94 EEFS-RLEEL-GIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLES 169 (766)
T ss_pred HHhh-hHHhc-CCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceehh
Confidence 9999 67654 9999999999998888899999999999999999998654 7899999999999999997 9999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCC-ceEecCCCCcccccEEEEecccccchHHHHHhcChHHHH
Q 000114 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2158)
Q Consensus 1487 ~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~-~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~ 1565 (2158)
+++|++.. ...+|||+||||++|+.++|+|+++... ..+.+.+..|+++....+.+...... ..........+.
T Consensus 170 iv~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~~~~~~~~ 244 (766)
T COG1204 170 IVARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALE 244 (766)
T ss_pred HHHHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-cccccchHHHHH
Confidence 99999987 3458999999999999999999999864 46777788888888887776654333 112223345566
Q ss_pred HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCccccc-ccCCCcccch-hhHhhhhHHHHHHHhcccEEEecCCC
Q 000114 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSA-FLLWPAEEVE-PFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2158)
Q Consensus 1566 ~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~-~l~~~~~~l~-~~~~~i~d~~L~~~l~~gv~~~H~~l 1643 (2158)
.+...+..++++||||+||+.+..+|..+..+.......... ........+. .......+..|.+++..|+++||+||
T Consensus 245 ~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL 324 (766)
T COG1204 245 LVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGL 324 (766)
T ss_pred HHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCC
Confidence 667777899999999999999999999998644332211110 0001111111 12223345789999999999999999
Q ss_pred CHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
+.++|..+++.|+.|+++|||||++++||||+|+.+|||+||+.|++. ....++++.+++||+|||||||+|..|.+++
T Consensus 325 ~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~-~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 325 PREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPK-GGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCC-CCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 999999999999999999999999999999999999999999999984 4488999999999999999999999999999
Q ss_pred EecCChHHHHHHHhh---CCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccH
Q 000114 1724 LCHAPRKEYYKKFLY---DAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHL 1800 (2158)
Q Consensus 1724 l~~~~~~~~~~k~l~---~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~ 1800 (2158)
++...+...|..-.+ .+.|++|.| .+..+.+...+++.+..++++|+..+|||+|+..||.+|+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~e~~~s~l----~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~-------- 471 (766)
T COG1204 404 LATSHDELEYLAELYIQSEPEPIESKL----GDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGE-------- 471 (766)
T ss_pred EecCccchhHHHHHhhccCcchHHHhh----cccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccc--------
Confidence 996655444433333 455544444 33338899999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCC---CHHHHHHHHhcCccccCC
Q 000114 1801 SDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKT---RMKGLLEVLASASEYAQL 1877 (2158)
Q Consensus 1801 ~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~---~~~~lL~ils~a~Ef~~i 1877 (2158)
....+.+..++..|.+.+.+...+...+.+|.+|..+|+|||++.|+..|...+.... +..++++.++.++||..+
T Consensus 472 -~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~ 550 (766)
T COG1204 472 -GMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPI 550 (766)
T ss_pred -cchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhh
Confidence 3456788899999999974444455679999999999999999999999998776654 688999999999999999
Q ss_pred CCCcchHHHH--HHHhhcCccccCCCCCCCh---------HHHHHHHHHHHhcCCCCC------CCchhhHHHHHHHHHH
Q 000114 1878 PIRPGEEEVV--RRLIHHQRFSFENPKFTDP---------HVKANALLQAHFSRQQVG------GNLKLDQEEVLLSASR 1940 (2158)
Q Consensus 1878 ~vR~~E~~~l--~~L~~~~p~~~~~~~~~~~---------~~K~~lLLqAhlsR~~lp------~~l~~D~~~Il~~~~r 1940 (2158)
++|..+...+ ..+....++..... ...+ ..|....+-+|++..+.. .....|...+...+.|
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w 629 (766)
T COG1204 551 KLRERESSELVLDELEEQSDYLLGER-LDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEW 629 (766)
T ss_pred hhhhhhhhhhhHHHHHhcchHHhhcc-ccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhh
Confidence 9998877664 44445555433211 1112 344555555555544321 1235677777777777
Q ss_pred H-------HHHHHHHHHhcCCHHHH-HHHHHHHHHHHhccC-CCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHh
Q 000114 1941 L-------LQAMVDVISSNGWLSLA-LLAMEVSQMVTQGMW-ERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLV 2008 (2158)
Q Consensus 1941 L-------l~a~vdi~~~~g~l~~~-l~~m~L~q~i~Q~~w-~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~ 2008 (2158)
+ ..++-..+...+...-- ...=.+...+.-|+- +...+|..++|++...++++.+.+ ..++.++.
T Consensus 630 ~~~~~~~l~~~~~r~~~~~~~~~~~~~~~~~~~~rie~gv~~e~~~~l~~i~~~grvrar~ly~~g---~~~~~~~~ 703 (766)
T COG1204 630 LSADLLALGKAAERLAKILGLGLHVLRKLEILSLRIEYGVRSEELLELVEIRGVGRVRARKLYNAG---YKSLEDLR 703 (766)
T ss_pred hhhhhhhhhhhhhhhHhhhCCCccccccchhhhhhhhcCCChhhhcccccccccchhHHHHHHHhh---hccHHHHH
Confidence 7 55555555544422100 122245666777777 667788899999998999999988 88888887
No 13
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=2.9e-51 Score=504.95 Aligned_cols=307 Identities=45% Similarity=0.753 Sum_probs=288.6
Q ss_pred ccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCChHH
Q 000114 1829 LSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1908 (2158)
Q Consensus 1829 ~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~ 1908 (2158)
+.||++|+|||+|||++.|++.|...+++.++..++|++||.|.||.++|+|++|+..+++|.+.+|++++...++.|+.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 57999999999999999999999999999999999999999999999999999999999999999998876566788999
Q ss_pred HHHHHHHHHhcCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCH
Q 000114 1909 KANALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMK 1987 (2158)
Q Consensus 1909 K~~lLLqAhlsR~~lp-~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~ 1987 (2158)
|+++||||||+|.++| .+|.+|+++|+++++||++||+||+..+||+.+++++|+|+|||+||+|++++||+|||||++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 9999999999999997 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccCCceEEEEEEeccccccCCCeEEEEEEEEEcC
Q 000114 1988 DLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDL 2067 (2158)
Q Consensus 1988 ~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~ 2067 (2158)
+.++++.++| +.++.+|.+++++++..++++++.++++|.++|++||+++|++++.+...+..+..++++++++++.
T Consensus 162 ~~~~~l~~~~---i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~ 238 (312)
T smart00611 162 EILKRLEKKK---VLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDD 238 (312)
T ss_pred HHHHHHHhCC---CCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEcc
Confidence 9999999988 9999999999999999999999999999999999999999999998876677889999999999842
Q ss_pred CCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccce---EEEEEEEecCCCCceEEEEEEEeCCccccCc
Q 000114 2068 EGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKS---RVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQ 2144 (2158)
Q Consensus 2068 ~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~---~~~l~f~~P~~~G~~~~~l~~~sDsY~G~D~ 2144 (2158)
.+| .|.|+||++|||.++|+|++++++++.+.. +++++|.+|..+|.|+|++++|||||+|||+
T Consensus 239 -------~~~------~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~~~~~v~v~SD~y~g~d~ 305 (312)
T smart00611 239 -------EIH------GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGNYQYTLRLVSDSYLGCDQ 305 (312)
T ss_pred -------ccc------CCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCcceEEEEEEecccCCcce
Confidence 122 689999999999999999999999987544 7899999998789999999999999999999
Q ss_pred EEEEEEE
Q 000114 2145 EYAFTVD 2151 (2158)
Q Consensus 2145 ~~~~~l~ 2151 (2158)
+++++|+
T Consensus 306 ~~~i~~~ 312 (312)
T smart00611 306 EYPLSFD 312 (312)
T ss_pred EEEEeeC
Confidence 9999873
No 14
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.7e-49 Score=468.39 Aligned_cols=557 Identities=24% Similarity=0.344 Sum_probs=419.1
Q ss_pred ccCC--CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEE
Q 000114 478 KISE--MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKI 553 (2158)
Q Consensus 478 ~i~~--lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~ki 553 (2158)
++++ +|+.++..+ .|++.|.|+|..++.+.+-.++|++|+++|+||||+++.++-+..+... +.|.
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~----------g~Km 264 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG----------GKKM 264 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC----------CCeE
Confidence 4544 589999998 7999999999999999988889999999999999999999988877653 3489
Q ss_pred EEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccce
Q 000114 554 VYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKL 626 (2158)
Q Consensus 554 l~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~l 626 (2158)
+|++|..|||+|.++.|+++..++|+++..-.|-....... ...++|||+|.|-+|.+.|.. ..+.+++.
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGt 341 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGT 341 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---Ccccccce
Confidence 99999999999999999999999999999888865544332 347899999999999999986 46889999
Q ss_pred EEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEE
Q 000114 627 LIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705 (2158)
Q Consensus 627 IIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~ 705 (2158)
|||||+|.|.| +||+.+.-++.|+.+ ..+..|+|+||||+.|+++++..|+..+. ....||||+..+.+
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~----l~~~AQ~i~LSATVgNp~elA~~l~a~lV------~y~~RPVplErHlv 411 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRY----LFPGAQFIYLSATVGNPEELAKKLGAKLV------LYDERPVPLERHLV 411 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHH----hCCCCeEEEEEeecCChHHHHHHhCCeeE------eecCCCCChhHeee
Confidence 99999999998 799999999999865 45689999999999999999999997642 33569999999887
Q ss_pred eeccCChhHHHHHhhHHHHHHHHHHhC---CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh
Q 000114 706 GIQVKKPLQRFQLMNDLCYEKVVAVAG---KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (2158)
Q Consensus 706 ~~~~~~~~~~~~~l~~~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 782 (2158)
..... ..+...++.++-........ .+|+|||++||+.|..+|..|..+|+..
T Consensus 412 f~~~e--~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a---------------------- 467 (830)
T COG1202 412 FARNE--SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKA---------------------- 467 (830)
T ss_pred eecCc--hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCccc----------------------
Confidence 65433 23334444444433333222 6799999999999999999998877554
Q ss_pred ccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHH
Q 000114 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2158)
Q Consensus 783 ~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2158)
+.+||||+..+|+.++..|.++.+.++|+|++|+.|||+|+-.||+..- . -+..++|+.
T Consensus 468 ---------------~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL-----a-MG~~WLs~~ 526 (830)
T COG1202 468 ---------------APYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL-----A-MGIEWLSVR 526 (830)
T ss_pred ---------------ccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH-----H-cccccCCHH
Confidence 3459999999999999999999999999999999999999999877421 1 124689999
Q ss_pred HHHHhhcccCCCCCCCccEEEEEcCCCcH----------HHHHHhh-cCCCcccchhhH-hhHHHHHHHHHhccccChHH
Q 000114 863 DIMQMLGRAGRPQYDSYGEGIIITGHSEL----------RYYLSLM-NQQLPIESQFVS-KLADQLNAEIVLGTVQNAKE 930 (2158)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~~~----------~~y~~ll-~~~~pieS~l~~-~l~d~lnaeI~~~~i~~~~~ 930 (2158)
+|.||.||||||+|...|++|+++.+... +.-.+++ ..+.|+.-.... .-.++..| ..|...+..+
T Consensus 527 EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~ 604 (830)
T COG1202 527 EFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSV 604 (830)
T ss_pred HHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHH
Confidence 99999999999999999999999976432 2223343 345565554443 12233333 2233333322
Q ss_pred HHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCc
Q 000114 931 ACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISH 1010 (2158)
Q Consensus 931 ~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~ 1010 (2158)
+ + .-|+...|... | ...++..|++.|||+.+ ++.+.+|+.|+++|.+++.|
T Consensus 605 i-~-----------~v~~~~~g~~~-----~----------~~k~l~~Lee~g~i~~~--G~~v~~T~yGrava~~Fl~p 655 (830)
T COG1202 605 I-E-----------RVNSLMLGAAF-----D----------PKKALSKLEEYGMIKKK--GNIVRPTPYGRAVAMSFLGP 655 (830)
T ss_pred H-h-----------hcChhhccccC-----C----------HHHHHHHHHhcCCeecc--CCEeeeccccceeEEeecCc
Confidence 1 1 11222222211 1 14578899999999854 35699999999999999999
Q ss_pred ccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhh-cCCCCCCC--------C---CC--Ch--hHHH
Q 000114 1011 GTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD-RVPIPVKE--------S---LE--EP--SAKI 1074 (2158)
Q Consensus 1011 ~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~-~~~~~~~~--------~---~~--~~--~~K~ 1074 (2158)
.++..+.+.+-..+ +.|+++..-.=|++..+...=+.++.+.+. ++|..+-. . +- +| ..|.
T Consensus 656 ~~a~~Ir~~v~~~~---~pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l 732 (830)
T COG1202 656 SEAEFIREGVLASM---DPLRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKL 732 (830)
T ss_pred hHHHHHHHhhhccC---ChHhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHH
Confidence 99998888754443 456677777778777777666666655442 23321111 0 00 22 3456
Q ss_pred HHHHHHHHcC-------------------CCCC-------------CCccc---chHHHHHHHHHHHHHHHHHHHHHcCC
Q 000114 1075 NVLLQAYISQ-------------------LKLE-------------GLSLT---SDMVFITQSAGRLLRALFEIVLKRGW 1119 (2158)
Q Consensus 1075 ~~llq~~i~~-------------------~~~~-------------~~~l~---~d~~~i~~~a~ri~~a~~ei~~~~~~ 1119 (2158)
..+.|.+++. ++++ .|.+. +|..+-++++.|++.|.-.||...+-
T Consensus 733 ~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~k 812 (830)
T COG1202 733 LLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKK 812 (830)
T ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666777663 1222 24443 89999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHcc
Q 000114 1120 AQLAEKALNLSKMVTKR 1136 (2158)
Q Consensus 1120 ~~~~~~~~~l~~~v~~~ 1136 (2158)
...+..+..|.+-|+.+
T Consensus 813 r~~~~ea~~lk~~ie~~ 829 (830)
T COG1202 813 REVEAEAKALKKKIEEG 829 (830)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 77777888887776643
No 15
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=3.6e-50 Score=496.33 Aligned_cols=307 Identities=38% Similarity=0.667 Sum_probs=239.3
Q ss_pred ccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCChHHHH
Q 000114 1831 PSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKA 1910 (2158)
Q Consensus 1831 ~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~ 1910 (2158)
||++|+|||+|||++.||+.|...+++.++..++|++||.|.||+++|+|++|+..|++|.+.+|++++...+.+|+.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999887556788999999
Q ss_pred HHHHHHHhcCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHH
Q 000114 1911 NALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDL 1989 (2158)
Q Consensus 1911 ~lLLqAhlsR~~lp-~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~ 1989 (2158)
++||||||+|+++| .+|.+|+.+|+++++||++||+|++..+||+.++.++|+|+|||+||+|++++||+|||||+++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccCCceEEEEEEeccc-cccCCCeEEEEEEEEEcCC
Q 000114 1990 AKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSE-NVRAGEDITLQVVLERDLE 2068 (2158)
Q Consensus 1990 ~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~P~i~v~~~v~~~~-~v~~g~~~~l~v~l~r~~~ 2068 (2158)
++++.++| |.++.+|+++++++++.+++.+++++++|.++++++|.++|++++.+.. .+. ..+++.|++++.+
T Consensus 161 ~~~l~~~~---i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~--~~~~v~v~i~~~~- 234 (314)
T PF02889_consen 161 LKKLEKRG---IKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIV--PILTVQVSITRKF- 234 (314)
T ss_dssp HHHHHHTT-----SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEEC--SEEEEEEEEEESS-
T ss_pred HHHHhccC---CCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccC--CcEEEEEEEEccc-
Confidence 99999999 9999999999999999999988999999999999999999988886532 121 5689999999954
Q ss_pred CCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeec-cc--ceEEEEEEEecCCCCc--eEEEEEEEeCCccccC
Q 000114 2069 GRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSL-QR--KSRVKLDFAAPAEAGK--KTYTLYFMCDSYMGCD 2143 (2158)
Q Consensus 2069 ~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~-~~--~~~~~l~f~~P~~~G~--~~~~l~~~sDsY~G~D 2143 (2158)
...++||+.|.|+||++|||.++|+|++++|+++ .+ .....++|.+|..+|. ++|+++++||+|+|+|
T Consensus 235 -------~~~~~~~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d 307 (314)
T PF02889_consen 235 -------SWSDRFPKKKKESWWLFVGDSKNNELLHFERITISKKKSKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLD 307 (314)
T ss_dssp -------S-SST-SS--B--EEEEEEECCCTEEEEEEEE---SS--EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--
T ss_pred -------ccccCCCCCCcccEEEEEEECCCCeEEEEeeeehhhhccCCcEEEEEEecCCCCCCCceEEEEEEECCccccc
Confidence 3345999999999999999999999999999999 44 6789999999976677 9999999999999999
Q ss_pred cEEEEEE
Q 000114 2144 QEYAFTV 2150 (2158)
Q Consensus 2144 ~~~~~~l 2150 (2158)
++++|+|
T Consensus 308 ~~~~i~~ 314 (314)
T PF02889_consen 308 QEVPINF 314 (314)
T ss_dssp EEEEEEE
T ss_pred eEEEeeC
Confidence 9999976
No 16
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=1.5e-50 Score=498.54 Aligned_cols=308 Identities=45% Similarity=0.765 Sum_probs=293.6
Q ss_pred cccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhcCCCCCC-CCCCChhH
Q 000114 994 FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSA 1072 (2158)
Q Consensus 994 ~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~~-~~~~~~~~ 1072 (2158)
+.+|++|++||+|||++.||+.|++.+++.++..++|+++|.|.||.++++|++|+.+|.+|.+.+|++.+ ...+.++.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 67999999999999999999999999999999999999999999999999999999999999999998876 45788999
Q ss_pred HHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCH
Q 000114 1073 KINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPN 1152 (2158)
Q Consensus 1073 K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~ 1152 (2158)
|+++||||||+|++++.++|.+|+.+|+++|.||++||+||+..+||+..+..+++|+|||+||+|++++||+|||++++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-CchhhccCChHHhhhhhcCc-hhHHHHHHHHhcCCcceEEEEEeeccCceEEEEEEEecCCcccCCCC
Q 000114 1153 EILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVH 1230 (2158)
Q Consensus 1153 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~ 1230 (2158)
+.+++|+++|+ +++++.++++++++.+++.+ +.++.|+++++.||++++++.++|+++..+++.++++++|.|+..+|
T Consensus 162 ~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 241 (312)
T smart00611 162 EILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDEIH 241 (312)
T ss_pred HHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEccccc
Confidence 99999999985 89999999999999999876 88999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEEEEecccccCCCcccccccc
Q 000114 1231 GYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302 (2158)
Q Consensus 1231 ~~~~~~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~~~~i~~~ 1302 (2158)
+..+.||+||+|++++.|+|+++|++++....+++.++|.+|...|. ++|+++++||+|+|++...+++|+
T Consensus 242 ~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~-~~~~v~v~SD~y~g~d~~~~i~~~ 312 (312)
T smart00611 242 GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGN-YQYTLRLVSDSYLGCDQEYPLSFD 312 (312)
T ss_pred CCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCc-ceEEEEEEecccCCcceEEEEeeC
Confidence 99999999999999999999999999887665678999999976555 999999999999999999988763
No 17
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=4e-45 Score=431.46 Aligned_cols=545 Identities=21% Similarity=0.276 Sum_probs=389.2
Q ss_pred hHHHHHhc--CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1330 PLYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1330 ~~~~~l~~--gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
+.++.++. |+.++.|+|+.++.+-+-.++|.+|+++|+||||+++++|-+..+.. .++ +.+|++|..|||+|.+
T Consensus 203 e~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--~g~--KmlfLvPLVALANQKy 278 (830)
T COG1202 203 EKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--GGK--KMLFLVPLVALANQKY 278 (830)
T ss_pred HHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--CCC--eEEEEehhHHhhcchH
Confidence 45666665 79999999999999966667889999999999999999998887766 244 8999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcchh-------hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-C
Q 000114 1408 RDWEIKFGQGLGMRVVELTGETAMD-------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q 1479 (2158)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~ltG~~~~~-------~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~ 1479 (2158)
.+|++++++. |+++..-.|-.... ...-..+||||+|.|-+|.++|.- ..+.+|+.|||||+|++.+ +
T Consensus 279 ~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGtVVIDEiHtL~deE 354 (830)
T COG1202 279 EDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGTVVIDEIHTLEDEE 354 (830)
T ss_pred HHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---CcccccceEEeeeeeeccchh
Confidence 9999999764 88887666643222 222345699999999999999872 6689999999999999988 7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEeccccc-chHHHHHh
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-NFEARMQA 1558 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~-~~~~~~~~ 1558 (2158)
+|+.+.-++.|++++. +..|+|+||||+.|+.+++..||+.. ...+.||||++.|+.-.... ........
T Consensus 355 RG~RLdGLI~RLr~l~----~~AQ~i~LSATVgNp~elA~~l~a~l-----V~y~~RPVplErHlvf~~~e~eK~~ii~~ 425 (830)
T COG1202 355 RGPRLDGLIGRLRYLF----PGAQFIYLSATVGNPEELAKKLGAKL-----VLYDERPVPLERHLVFARNESEKWDIIAR 425 (830)
T ss_pred cccchhhHHHHHHHhC----CCCeEEEEEeecCChHHHHHHhCCee-----EeecCCCCChhHeeeeecCchHHHHHHHH
Confidence 9999999999999984 48999999999999999999999875 23356999999998654422 22222222
Q ss_pred cChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEE
Q 000114 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2158)
Q Consensus 1559 ~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~ 1638 (2158)
+.+..+...... .-.+++|||++||+.|..+|..|.. -+..+.+
T Consensus 426 L~k~E~~~~ssk-g~rGQtIVFT~SRrr~h~lA~~L~~-----------------------------------kG~~a~p 469 (830)
T COG1202 426 LVKREFSTESSK-GYRGQTIVFTYSRRRCHELADALTG-----------------------------------KGLKAAP 469 (830)
T ss_pred HHHHHHhhhhcc-CcCCceEEEecchhhHHHHHHHhhc-----------------------------------CCccccc
Confidence 333333332222 4468899999999999999966621 1345789
Q ss_pred ecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEE----ecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV----MGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1639 ~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI----~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
||+||+..+|+.++..|.++.+.++|+|.+++.|||+|+..||+ ||. .++++.+|.||.||||||+
T Consensus 470 YHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~----------~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 470 YHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGI----------EWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred ccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHccc----------ccCCHHHHHHHhcccCCCC
Confidence 99999999999999999999999999999999999999999987 444 3568999999999999999
Q ss_pred CCCceEEEEEecCChH----------HHHHHHhh-CCCccccchhh-HHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhh
Q 000114 1715 LDNSGKCVILCHAPRK----------EYYKKFLY-DAFPVESHLHH-FLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRR 1782 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~----------~~~~k~l~-~~~piES~L~~-~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrR 1782 (2158)
+...|++++++.+.++ +.--++|+ +++|+.-...+ .-.+.+.| ..+...+.++ ++-+
T Consensus 540 yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~-i~~v-------- 608 (830)
T COG1202 540 YHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSV-IERV-------- 608 (830)
T ss_pred cccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHH-Hhhc--------
Confidence 9999999999987653 22234555 67787766632 22233333 3344444443 1111
Q ss_pred hccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHH
Q 000114 1783 LTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMK 1862 (2158)
Q Consensus 1783 l~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~ 1862 (2158)
|+.+.|-. --.+.++..|++.|+|..+. +.+.||+.|+++|.+++.|.++..+...+-..+.
T Consensus 609 ---~~~~~g~~------------~~~~k~l~~Lee~g~i~~~G-~~v~~T~yGrava~~Fl~p~~a~~Ir~~v~~~~~-- 670 (830)
T COG1202 609 ---NSLMLGAA------------FDPKKALSKLEEYGMIKKKG-NIVRPTPYGRAVAMSFLGPSEAEFIREGVLASMD-- 670 (830)
T ss_pred ---Chhhcccc------------CCHHHHHHHHHhcCCeeccC-CEeeeccccceeEEeecCchHHHHHHHhhhccCC--
Confidence 22222211 01367899999999997642 3599999999999999999999999987544433
Q ss_pred HHHHHHhcCccccCCCCCcchHHHHHHH-hhcCccccCC----------CCC--CChH--HHHHHHHHHHhcCC------
Q 000114 1863 GLLEVLASASEYAQLPIRPGEEEVVRRL-IHHQRFSFEN----------PKF--TDPH--VKANALLQAHFSRQ------ 1921 (2158)
Q Consensus 1863 ~lL~ils~a~Ef~~i~vR~~E~~~l~~L-~~~~p~~~~~----------~~~--~~~~--~K~~lLLqAhlsR~------ 1921 (2158)
.+.+++.-.=|++..+...=...+... .-++|-.+-. .++ -+|. .|.+++.+..++..
T Consensus 671 -pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce 749 (830)
T COG1202 671 -PLRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCE 749 (830)
T ss_pred -hHhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHH
Confidence 345555555566555443322222221 2223322210 001 1342 34555555555420
Q ss_pred -------------C--------CC---------CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000114 1922 -------------Q--------VG---------GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1967 (2158)
Q Consensus 1922 -------------~--------lp---------~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~ 1967 (2158)
. ++ ..|..|...-|+++.|++.|.-.|+..++--..+..|+.|..-
T Consensus 750 ~~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~ 825 (830)
T COG1202 750 CAEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKK 825 (830)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0 11 1356788888999999998888888665543333344444443
No 18
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=3.6e-47 Score=469.66 Aligned_cols=305 Identities=39% Similarity=0.662 Sum_probs=243.2
Q ss_pred cChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhcCCCCC-CCCCCChhHHH
Q 000114 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV-KESLEEPSAKI 1074 (2158)
Q Consensus 996 ~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~-~~~~~~~~~K~ 1074 (2158)
||++|+|||+|||++.||..|.+.+++.++..++|.++|.|.||+++++|++|+.+|.+|..++|+|+ ++.+.+++.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999998 77799999999
Q ss_pred HHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHH
Q 000114 1075 NVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154 (2158)
Q Consensus 1075 ~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~ 1154 (2158)
++||||||+|+++++++|.+|+.+|+++|.||++||+|||..+||+..+.++++|+|||.||+|+..+||+|||||+++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC-CCchhhccCChHHhhhhhc-CchhHHHHHHHHhcCCcceEEEEEeeccCce---EEEEEEEecCCcccCCC
Q 000114 1155 LMKLEKKD-FAWERYYDLSPQELGELIR-FPKMGRTLHKFVHQFPKLILAAHVQPITRTV---LKVELTITPDFLWDDKV 1229 (2158)
Q Consensus 1155 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~P~~~~~~~~~p~~~~~---~~~~l~~~~~~~~~~~~ 1229 (2158)
+++|+++| .+++++.++++++++.+++ .+..|+.|.+++++||++++++.++|++.+. ++|+|++++.+.|+..+
T Consensus 161 ~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~i~~~~~~~~~~ 240 (314)
T PF02889_consen 161 LKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVSITRKFSWSDRF 240 (314)
T ss_dssp HHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEEEEESSS-SST-
T ss_pred HHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEEEEcccccccCC
Confidence 99999999 4899999999999999997 7889999999999999999999999999888 99999999999999999
Q ss_pred CCC-cccEEEEEEeCCCCeEeeeehhhh-hccccccccEEEEEEecc-CCCCCeEEEEEecccccCCCccccccc
Q 000114 1230 HGY-VEPFWVIVEDNDGEYILHHEYFML-KKQYIEEDHSLNFTVPIY-EPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2158)
Q Consensus 1230 ~~~-~~~~~~~v~d~~~~~i~~~~~~~l-~~~~~~~~~~~~f~vp~~-~p~p~~y~v~~vSd~wlg~e~~~~i~~ 1301 (2158)
|+. .+.||++|+|.+++.|++++++.+ +++ ....+.++|++|.. .|.|++|.++++||+|+|++..++++|
T Consensus 241 ~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~-~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d~~~~i~~ 314 (314)
T PF02889_consen 241 PKKKKESWWLFVGDSKNNELLHFERITISKKK-SKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLDQEVPINF 314 (314)
T ss_dssp SS--B--EEEEEEECCCTEEEEEEEE---SS---EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--EEEEEEE
T ss_pred CCCCcccEEEEEEECCCCeEEEEeeeehhhhc-cCCcEEEEEEecCCCCCCCceEEEEEEECCccccceEEEeeC
Confidence 999 899999999999999999999999 332 34678899999976 566699999999999999999988875
No 19
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-45 Score=418.55 Aligned_cols=336 Identities=22% Similarity=0.338 Sum_probs=280.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|++.|++||++++|.++.+.+ +|..|.||||||.+|.+||++.+...+ ..+.+++++|||+||.|+.+.|
T Consensus 79 l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p--------~~~~~lVLtPtRELA~QI~e~f 149 (476)
T KOG0330|consen 79 LGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEP--------KLFFALVLTPTRELAQQIAEQF 149 (476)
T ss_pred hCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCC--------CCceEEEecCcHHHHHHHHHHH
Confidence 5799999999999999999877 999999999999999999999998854 3589999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh---hhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~ 645 (2158)
..+....|++|..+.|+.+...+ ....++|+|+||+++ |.+.+..+ ..+..++++|+||||.++| ++++.++.
T Consensus 150 e~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg--f~le~lk~LVlDEADrlLd~dF~~~ld~ 227 (476)
T KOG0330|consen 150 EALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG--FSLEQLKFLVLDEADRLLDMDFEEELDY 227 (476)
T ss_pred HHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC--ccHHHhHHHhhchHHhhhhhhhHHHHHH
Confidence 99989999999999999886654 356899999999995 88875544 5688999999999999998 68888888
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEe-cCCccccc-ceeEEEeeccCChhHHHHHhhHHH
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-DNSYRPVP-LSQQYIGIQVKKPLQRFQLMNDLC 723 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f-~~~~rpv~-l~~~~~~~~~~~~~~~~~~l~~~~ 723 (2158)
|+..+ +...|.+++|||+| ..+.+..+..+..+.-.. ...|+.++ +.++|+.++.+.....+
T Consensus 228 ILk~i-------p~erqt~LfsATMt--~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL------- 291 (476)
T KOG0330|consen 228 ILKVI-------PRERQTFLFSATMT--KKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL------- 291 (476)
T ss_pred HHHhc-------CccceEEEEEeecc--hhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH-------
Confidence 87765 57889999999999 677777777766554443 34455553 55666666554322211
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCC
Q 000114 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2158)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHag 803 (2158)
. .+++...++++||||++...+..++-.|...++.+..+ ||.
T Consensus 292 V-~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~L-------------------------------------hGq 333 (476)
T KOG0330|consen 292 V-YLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPL-------------------------------------HGQ 333 (476)
T ss_pred H-HHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecc-------------------------------------cch
Confidence 1 12333447899999999999999999999988776555 999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEE
Q 000114 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2158)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2158)
|++..|.-.++.|++|...|||||++++||+|+|.+++||| ||.|. +..||+||+||+||.| .+|.+|
T Consensus 334 msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yDiP~------~skDYIHRvGRtaRaG--rsG~~I 401 (476)
T KOG0330|consen 334 MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN----YDIPT------HSKDYIHRVGRTARAG--RSGKAI 401 (476)
T ss_pred hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe----cCCCC------cHHHHHHHcccccccC--CCcceE
Confidence 99999999999999999999999999999999999999999 77665 6779999999999999 789999
Q ss_pred EEcCCCcHHHHHHh---hcCCCc
Q 000114 884 IITGHSELRYYLSL---MNQQLP 903 (2158)
Q Consensus 884 il~~~~~~~~y~~l---l~~~~p 903 (2158)
.++++-+.+.|.++ +...+|
T Consensus 402 tlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 402 TLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred EEEehhhhHHHHHHHHHHhcCCC
Confidence 99999998888763 444443
No 20
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=9.9e-45 Score=455.40 Aligned_cols=658 Identities=23% Similarity=0.331 Sum_probs=448.8
Q ss_pred CCChhhHhhc---CCCCCCCHHHHHHH--HHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEE
Q 000114 481 EMPEWAQPAF---KGMTQLNRVQSRVY--KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555 (2158)
Q Consensus 481 ~lp~~~~~~f---~g~~~l~~iQ~~~i--~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ 555 (2158)
-+|+.....+ +|...+..+|.+|+ +.++ +.+|+|..+||++|||+++.+-|++.+...+. +++.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~rr----------~~ll 274 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----------NVLL 274 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHhh----------ceeE
Confidence 4455444433 78889999999998 4445 77899999999999999999999998776532 6999
Q ss_pred EcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 556 VAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 556 iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
+.|..+.+++....+..++.++|+.|.++.|...... ..+...+.|||.||-..+.....+...+..+++|||||.|++
T Consensus 275 ilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~-~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 275 ILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK-RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred ecceeehhHHHHhhhhhhccccCCcchhhcccCCCCC-cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeee
Confidence 9999999999999999999999999999997665443 345678999999997666665544456677999999999999
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEE-eeccCChh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI-GIQVKKPL 713 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~-~~~~~~~~ 713 (2158)
+| +||..+|.++++++...... .+|+||||||+||..+++.|+... ++...|||+|+..... |......
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~~--~~~iIGMSATi~N~~lL~~~L~A~------~y~t~fRPv~L~E~ik~G~~i~~~- 424 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLET--SVQIIGMSATIPNNSLLQDWLDAF------VYTTRFRPVPLKEYIKPGSLIYES- 424 (1008)
T ss_pred eccccchHHHHHHHHHHHhcccc--ceeEeeeecccCChHHHHHHhhhh------heecccCcccchhccCCCcccccc-
Confidence 99 79999999999998755433 389999999999999999999853 5677899999987542 1111111
Q ss_pred HHHHHhhHHH---------------HHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhccccccccccc-CchhHHH
Q 000114 714 QRFQLMNDLC---------------YEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE-DSVSREI 776 (2158)
Q Consensus 714 ~~~~~l~~~~---------------~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~-~~~~~~~ 776 (2158)
.+...+.++. .....+... +.++||||++|+.|+.+|..+.........-..++.. +..+...
T Consensus 425 ~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~ 504 (1008)
T KOG0950|consen 425 SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISN 504 (1008)
T ss_pred hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHh
Confidence 0111111111 111122223 5679999999999999997776543322111111100 0000000
Q ss_pred HHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCcc
Q 000114 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (2158)
Q Consensus 777 l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~ 856 (2158)
........-+..++..+++|++|||+|++.++|+.|+..|+.|.+.|++||+|+++|||+|+.+|||.. ||-. .
T Consensus 505 ~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira--P~~g----~ 578 (1008)
T KOG0950|consen 505 LLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA--PYVG----R 578 (1008)
T ss_pred HhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC--Cccc----c
Confidence 111223445777999999999999999999999999999999999999999999999999999999972 2222 2
Q ss_pred ccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcCCC-cccchhhH----hhHHHHHHHHHhccccChHHH
Q 000114 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQL-PIESQFVS----KLADQLNAEIVLGTVQNAKEA 931 (2158)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~-pieS~l~~----~l~d~lnaeI~~~~i~~~~~~ 931 (2158)
..++..+|.||+|||||.|.|+.|.+++++...+...+..+++.+. |+-|++.. .+...+..-|+.+...+.+|.
T Consensus 579 ~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di 658 (1008)
T KOG0950|consen 579 EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDI 658 (1008)
T ss_pred chhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHH
Confidence 4568899999999999999999999999999999988888887765 56666643 122344556777888899999
Q ss_pred HHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHH-HHHhHCCCcc-ccccCCccccChHHHHHHHhccC
Q 000114 932 CNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA-TILDRNNLVK-YDRKSGYFQVTDLGRIASYYYIS 1009 (2158)
Q Consensus 932 ~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~-~~L~~~~~i~-~~~~~~~~~~T~lG~i~s~~yi~ 1009 (2158)
..+..+|+++..... ..-..+.+ .+.+.. .+..+. ..+-...+|. -........+|+||+..=.-.++
T Consensus 659 ~~~va~tl~s~q~~~--~~~~~~le-~~s~ql-------~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~ 728 (1008)
T KOG0950|consen 659 LHFVAVTLLSAQEKP--ENVREQLE-MESDQL-------VINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSD 728 (1008)
T ss_pred HHHHHHhhhhcccch--hhhhhccc-chhhhh-------ccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCC
Confidence 999999998876321 11111111 000000 001111 1122222222 11111222389999987666677
Q ss_pred cccHHHHHhhcCCCC----------------------CHHHHHHHhhCCccCCCCcCChhHHHHHHHHh-------hcCC
Q 000114 1010 HGTISTYNEHLKPTM----------------------GDIELCRLFSLSEEFKYVTVRQDEKMELAKLL-------DRVP 1060 (2158)
Q Consensus 1010 ~~t~~~~~~~l~~~~----------------------~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~-------~~~~ 1060 (2158)
+.-...+...|+..+ +..+.+..++. |.. +.+-|+. +.++. .++.
T Consensus 729 ~~~a~~l~~~L~~~~~~~vle~~lh~lylvtP~~~~~~~~dwli~f~i---~~~--L~~~~~~-~~~~~G~~e~fi~~~~ 802 (1008)
T KOG0950|consen 729 PEVANILFADLKKSLPQLVLESSLHLLYLVTPYLEVMNDIDWLIYFQI---YHT--LPSPEQK-LAKLLGVIESFIEKCV 802 (1008)
T ss_pred hhhhHHHHHHHHHhhhccccccccceeeeecchHhhcccccHHHHHHH---Hhc--CCcHHHH-HHhhhchHHHHHHHhh
Confidence 654443333222211 11111111111 001 1111211 11111 1110
Q ss_pred C-CCCCCCCCh----hHHHHHHHHHHHcCCCC----CCCccc-chHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000114 1061 I-PVKESLEEP----SAKINVLLQAYISQLKL----EGLSLT-SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLS 1130 (2158)
Q Consensus 1061 ~-~~~~~~~~~----~~K~~~llq~~i~~~~~----~~~~l~-~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~ 1130 (2158)
. .......+. ..=+...||.+++..++ ++|... +=+...+++|.+...++.-.|.+.+|.......-++-
T Consensus 803 ~gqs~~~~~~~~~~~r~y~~l~L~~li~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~ 882 (1008)
T KOG0950|consen 803 SGQSVRNLQNVQKRKRLYVALALQKLINESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFY 882 (1008)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHhhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 0 000001111 12267889999999987 556655 4456788999999999999999999985545555677
Q ss_pred HHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhc
Q 000114 1131 KMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (2158)
Q Consensus 1131 ~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 1181 (2158)
+++..+.-.+..||..+|++...++++|+.+|+ ++.+|..-++.++..-+.
T Consensus 883 ~rl~~g~~~eL~~Lmrv~~~~~~RAr~lf~Agf~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 883 GRLSFGGHAELIPLMRVPDVKAERARQLFKAGFTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred HHHhccchhhhhhhhcCchhHHHHHHHHHHhhccchHHHhcCChHHHHHHhh
Confidence 888888888999999999999999999999998 567777778888776654
No 21
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.1e-42 Score=475.14 Aligned_cols=413 Identities=24% Similarity=0.341 Sum_probs=294.3
Q ss_pred CCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 480 SEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 480 ~~lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
+.|++.+++.| .+|..|||+|.++++.++.+ +|++++||||||||++|++|+++.+......+ ....+.++|||+|
T Consensus 16 ~~l~~~v~~~~~~~~~~~tpiQ~~Ai~~il~g-~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~--~~~~~~~~LyIsP 92 (876)
T PRK13767 16 DLLRPYVREWFKEKFGTFTPPQRYAIPLIHEG-KNVLISSPTGSGKTLAAFLAIIDELFRLGREG--ELEDKVYCLYVSP 92 (876)
T ss_pred hhcCHHHHHHHHHccCCCCHHHHHHHHHHHcC-CCEEEECCCCCcHHHHHHHHHHHHHHhhcccc--CCCCCeEEEEEcC
Confidence 45677777777 67899999999999998766 57999999999999999999999886532111 0124678999999
Q ss_pred cHHHHHHHHHHHHhhc-----------ccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccc
Q 000114 559 MKALVAEVVGNLSNRL-----------QMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQL 623 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~-----------~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~ 623 (2158)
+|||+.|+++++...+ ... ++++...+||.....+. ...++|+|||||++..+.+.......+.+
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 9999999998766322 122 67899999998765542 34789999999999776655433346789
Q ss_pred cceEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccc----cCceEEecCCc-cc
Q 000114 624 VKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL----EKGLFYFDNSY-RP 697 (2158)
Q Consensus 624 v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~----~~~~~~f~~~~-rp 697 (2158)
+++|||||||.+.+ .||..++.++.|+.... ....|+|++|||++|.++++.|+.... ..........+ ++
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKP 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCcc
Confidence 99999999999986 69999999999886543 357899999999999999999997531 11222222221 22
Q ss_pred ccceeEEEeeccCCh-hHHHHHhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHH
Q 000114 698 VPLSQQYIGIQVKKP-LQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSRE 775 (2158)
Q Consensus 698 v~l~~~~~~~~~~~~-~~~~~~l~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~ 775 (2158)
..+.. . ...... ......+...++..+.+.. ..+++|||||||+.|+.++..|.......
T Consensus 250 ~~i~v--~-~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~--------------- 311 (876)
T PRK13767 250 FDIKV--I-SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEE--------------- 311 (876)
T ss_pred ceEEE--e-ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhh---------------
Confidence 22111 1 000000 0000111222333333332 26789999999999999999987632110
Q ss_pred HHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCc
Q 000114 776 ILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA 855 (2158)
Q Consensus 776 ~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~ 855 (2158)
....++++|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |++|.
T Consensus 312 ----------------~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~P~-- 369 (876)
T PRK13767 312 ----------------YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGSPK-- 369 (876)
T ss_pred ----------------ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCCCC--
Confidence 12467999999999999999999999999999999999999999999999999 66664
Q ss_pred cccCCHHHHHHhhcccCCCCCCCccEEEEEcCC-CcHHH---HH-Hhhc---CCCcccchhhHhhHHHHHHHHHhccccC
Q 000114 856 WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH-SELRY---YL-SLMN---QQLPIESQFVSKLADQLNAEIVLGTVQN 927 (2158)
Q Consensus 856 ~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~-~~~~~---y~-~ll~---~~~pieS~l~~~l~d~lnaeI~~~~i~~ 927 (2158)
|+.+|+||+|||||.+ +..+.+++++.. .+.-. +. .... ++..+...-...|..|+.+.++. ...+
T Consensus 370 ----sv~~ylQRiGRaGR~~-g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~-~~~~ 443 (876)
T PRK13767 370 ----SVSRLLQRIGRAGHRL-GEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIE-RPWD 443 (876)
T ss_pred ----CHHHHHHhcccCCCCC-CCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHc-CCCC
Confidence 7889999999999853 233444444433 33221 11 1111 11112223345678888886555 4678
Q ss_pred hHHHHHHHHhhHHHHHh
Q 000114 928 AKEACNWIGYTYLYIRM 944 (2158)
Q Consensus 928 ~~~~~~wl~~t~~~~r~ 944 (2158)
.+++.+|++.||.|..+
T Consensus 444 ~~~~~~~~~~~~~~~~l 460 (876)
T PRK13767 444 IEEAYNIVRRAYPYRDL 460 (876)
T ss_pred HHHHHHHHhccCCcccC
Confidence 99999999999988753
No 22
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2e-42 Score=447.33 Aligned_cols=450 Identities=23% Similarity=0.299 Sum_probs=334.7
Q ss_pred cCCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000114 479 ISEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2158)
Q Consensus 479 i~~lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia 557 (2158)
.+.||++++++| ..|.+|||.|.+|++.+..| .|+||+||||||||++|.||++..+.... +....++..+|||+
T Consensus 5 ~~~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~~G-~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIs 80 (814)
T COG1201 5 FNILDPRVREWFKRKFTSLTPPQRYAIPEIHSG-ENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYIS 80 (814)
T ss_pred hhhcCHHHHHHHHHhcCCCCHHHHHHHHHHhCC-CceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeC
Confidence 456899999999 55999999999999999855 67999999999999999999999998752 11123568999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 558 P~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|.|||..++.+++...+..+|+.|..-|||+....++ .+.+||+|||||.+..+.....-+..+.+|+++||||+|.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh
Confidence 9999999999999999999999999999999877654 4578999999999976665545567899999999999998
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChh
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
+.+ .||..+...+.|+.... .+.|.||||||+.+.+++++||.........+-...-++..+............
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~----~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~- 235 (814)
T COG1201 161 LAESKRGVQLALSLERLRELA----GDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD- 235 (814)
T ss_pred hhccccchhhhhhHHHHHhhC----cccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc-
Confidence 876 79999999999886532 289999999999999999999987631112222222222222211111110000
Q ss_pred HHHHHhhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhh
Q 000114 714 QRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l 792 (2158)
.......+..+.+..+ ...+|||+|||..|+.++..|...+.
T Consensus 236 ---~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~---------------------------------- 278 (814)
T COG1201 236 ---EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP---------------------------------- 278 (814)
T ss_pred ---cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcC----------------------------------
Confidence 1112223333433333 34799999999999999999887531
Q ss_pred ccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
..+..|||+++++.|..+|+.|++|+++++|||++|+-|||+.+++.||+ |..|+ |+..++||+||+|
T Consensus 279 --~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq----~~SP~------sV~r~lQRiGRsg 346 (814)
T COG1201 279 --DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ----LGSPK------SVNRFLQRIGRAG 346 (814)
T ss_pred --CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE----eCCcH------HHHHHhHhccccc
Confidence 45899999999999999999999999999999999999999999999999 77766 8999999999999
Q ss_pred CCCCCCccEEEEEcCCCcHHHHHH------hhc---CCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHH
Q 000114 873 RPQYDSYGEGIIITGHSELRYYLS------LMN---QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943 (2158)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~~------ll~---~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r 943 (2158)
+ +.+...++++++.+- .+.++. .+. +..++.-.-...|..++++.+... .-+.+++.+.++.+|.|..
T Consensus 347 H-r~~~~Skg~ii~~~r-~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~ 423 (814)
T COG1201 347 H-RLGEVSKGIIIAEDR-DDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYAD 423 (814)
T ss_pred c-ccCCcccEEEEecCH-HHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhcccccc
Confidence 8 456778999998872 222221 111 134455555667888888877776 7788999998888887754
Q ss_pred hhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhH--CCCccccccCCccccChHHHHHHHhccCcccH
Q 000114 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR--NNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013 (2158)
Q Consensus 944 ~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~--~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~ 1013 (2158)
+ +. +-..+.++.|.. .+.++...... -..+.-.....+||.+..|+
T Consensus 424 L---------~~--------------e~f~~v~~~l~~~~~~~~~i~~~~~-~~~~~~~~~~~~y~~n~~tI 471 (814)
T COG1201 424 L---------SR--------------EDFRLVLRYLAGEKNVYAKIWLDED-GLFGRGKGTRMIYYMNYGTI 471 (814)
T ss_pred C---------CH--------------HHHHHHHHHHhhcccceeEEeecCc-ceeccCccceeeeeeccccc
Confidence 2 22 123456677777 66665543221 12233334446666666555
No 23
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=8.2e-42 Score=466.50 Aligned_cols=423 Identities=22% Similarity=0.317 Sum_probs=304.3
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC----CCceEEEEEcccHHHHH
Q 000114 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~----~~~~~~v~IaP~raLa~ 1404 (2158)
+.+.+.+. +|..|+|+|+++++.+++ ++|++++||||||||++|.+|++..+..... ..++++|||+|+++|+.
T Consensus 20 ~~v~~~~~~~~~~~tpiQ~~Ai~~il~-g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~ 98 (876)
T PRK13767 20 PYVREWFKEKFGTFTPPQRYAIPLIHE-GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNN 98 (876)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHc-CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHH
Confidence 45566665 689999999999999877 5579999999999999999999998875311 22458999999999999
Q ss_pred HHHHHHHHHh----------cCCC-CcEEEEEcCCcchhhh--cc-cCCcEEEeCHHHHHHHHhhhhccccccceeEEEe
Q 000114 1405 ERYRDWEIKF----------GQGL-GMRVVELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFII 1470 (2158)
Q Consensus 1405 q~~~~~~~~f----------~~~~-g~~v~~ltG~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIi 1470 (2158)
|+++++...+ +... ++++...+|+++...+ .+ ..++|+|+|||++..+++....+..++++++|||
T Consensus 99 di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 99 DIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEE
Confidence 9998765322 2222 7789999999876543 33 3569999999999988876554456899999999
Q ss_pred cccccccC-CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCC-----Cc-eEecCCCCcccccEEE
Q 000114 1471 DELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS-----HG-LFNFPPGVRPVPLEIH 1543 (2158)
Q Consensus 1471 DEaH~l~~-~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~-----~~-i~~f~~~~rpv~l~~~ 1543 (2158)
||+|.+.+ .+|..++..+.|+..+. +.+.|+|++|||++|.++++.|++... .. .+......++..+.+.
T Consensus 179 DE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 179 DEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred echhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 99999886 57999999999998875 357899999999999999999997642 11 1111122233222222
Q ss_pred EecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhh
Q 000114 1544 IQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI 1623 (2158)
Q Consensus 1544 i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i 1623 (2158)
.......... ...+....+..+...+..++++||||||++.|+.++..|...+..
T Consensus 256 ~p~~~l~~~~--~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~----------------------- 310 (876)
T PRK13767 256 SPVDDLIHTP--AEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPE----------------------- 310 (876)
T ss_pred ccCccccccc--cchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchh-----------------------
Confidence 1111100000 011223344555555566789999999999999999877542110
Q ss_pred hHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHH
Q 000114 1624 QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDL 1703 (2158)
Q Consensus 1624 ~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~ 1703 (2158)
.....++++|||+|+.++|..+++.|++|.++|||||+++++|||+|++.+|| ++..|.++.+|
T Consensus 311 ------~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI----------~~~~P~sv~~y 374 (876)
T PRK13767 311 ------EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVV----------LLGSPKSVSRL 374 (876)
T ss_pred ------hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEE----------EeCCCCCHHHH
Confidence 01346799999999999999999999999999999999999999999999999 45677899999
Q ss_pred HHhhccCCCCC-CCCceEEEEEecCChHH---HHHHHhh-CCCcc--ccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHH
Q 000114 1704 LQMMGHASRPL-LDNSGKCVILCHAPRKE---YYKKFLY-DAFPV--ESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTW 1776 (2158)
Q Consensus 1704 lQr~GRaGR~g-~d~~G~~iil~~~~~~~---~~~k~l~-~~~pi--ES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~ 1776 (2158)
+||+|||||.+ ....|.++......-.+ ..+.... ...++ ...-...|..|+.+-+..+ .-+.+++.+++..
T Consensus 375 lQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~~~~~~~~~~ 453 (876)
T PRK13767 375 LQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDIEEAYNIVRR 453 (876)
T ss_pred HHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCHHHHHHHHhc
Confidence 99999999974 22345555432221111 1122222 12222 2222456788888866664 6689999999999
Q ss_pred hhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhC
Q 000114 1777 TFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEAS 1818 (2158)
Q Consensus 1777 t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~ 1818 (2158)
||+|+.+.. +..+.+|..|...
T Consensus 454 ~~~~~~l~~--------------------~~~~~~l~~l~~~ 475 (876)
T PRK13767 454 AYPYRDLSD--------------------EDFESVLRYLAGD 475 (876)
T ss_pred cCCcccCCH--------------------HHHHHHHHHHhcc
Confidence 999986543 4556667777665
No 24
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-43 Score=389.36 Aligned_cols=300 Identities=31% Similarity=0.512 Sum_probs=258.8
Q ss_pred cCCCCCHHHHHHHHhcCcccc-----CCCCCcchHHHHHHHhhcCcc---ccCCCCCCCh-HHHHHHHHHHHhcCCCCCC
Q 000114 1855 LTPKTRMKGLLEVLASASEYA-----QLPIRPGEEEVVRRLIHHQRF---SFENPKFTDP-HVKANALLQAHFSRQQVGG 1925 (2158)
Q Consensus 1855 l~~~~~~~~lL~ils~a~Ef~-----~i~vR~~E~~~l~~L~~~~p~---~~~~~~~~~~-~~K~~lLLqAhlsR~~lp~ 1925 (2158)
-+++|.++.+|.+||.|.||+ ++.-|+.+.-.+..|.+.++- +...+.+..| +.|+.+||.|||+|++|++
T Consensus 7 kTp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~ 86 (520)
T KOG4434|consen 7 RTPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLES 86 (520)
T ss_pred cCchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCCh
Confidence 467788899999999999997 678899998888888887653 3333445556 7999999999999999985
Q ss_pred -CchhhHHHHHHHHHHHHHHHHHHHHhc----------C--CHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHH
Q 000114 1926 -NLKLDQEEVLLSASRLLQAMVDVISSN----------G--WLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKR 1992 (2158)
Q Consensus 1926 -~l~~D~~~Il~~~~rLl~a~vdi~~~~----------g--~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~ 1992 (2158)
.|..|+.+|+.+|++|++.||.++... . .+.+.-|||.|++|++||+|...|||+|||||++..+.+
T Consensus 87 dtLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~ 166 (520)
T KOG4434|consen 87 DTLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQH 166 (520)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHH
Confidence 899999999999999999999986532 1 245667999999999999999999999999999999999
Q ss_pred HHhCCCCCccCHHHHhcCCHHHHHHHhC-CChHHHHHHHHHHccCCceEEEEE--Eec---cccccCCCeEEEEEEEEEc
Q 000114 1993 CQENPGKSIETVFDLVEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDMSFE--VQD---SENVRAGEDITLQVVLERD 2066 (2158)
Q Consensus 1993 l~~~~~~~i~tv~dl~~~~~~~r~~ll~-~~~~~~~~v~~~~~~~P~i~v~~~--v~~---~~~v~~g~~~~l~v~l~r~ 2066 (2158)
+.++- .|++++||+.|..+.|..+|. |++.++++|+.++..+|.|.++++ |.| .+.+++|+.||+.|+|+|.
T Consensus 167 ~~KKr--~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~ 244 (520)
T KOG4434|consen 167 LRKKR--KVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRS 244 (520)
T ss_pred Hhhhc--ccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEec
Confidence 87543 399999999999999999997 899999999999999999988554 544 3579999999999999872
Q ss_pred C--C-------------------CC-------------------------------------------------------
Q 000114 2067 L--E-------------------GR------------------------------------------------------- 2070 (2158)
Q Consensus 2067 ~--~-------------------~~------------------------------------------------------- 2070 (2158)
. + ++
T Consensus 245 ~l~d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~ 324 (520)
T KOG4434|consen 245 RLIDPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASP 324 (520)
T ss_pred cccChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCCh
Confidence 1 0 00
Q ss_pred -----------------------------------------------------------------------cccCccccC
Q 000114 2071 -----------------------------------------------------------------------TEVGPVYSN 2079 (2158)
Q Consensus 2071 -----------------------------------------------------------------------~~~~~v~ap 2079 (2158)
.-+++||||
T Consensus 325 at~ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~p 404 (520)
T KOG4434|consen 325 ATEKALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSP 404 (520)
T ss_pred hhhhhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccC
Confidence 003589999
Q ss_pred CCCCCccccEEEEEEECCCCeEEEEE--EeecccceEEEEEEEecCCCCceEEEEEEEeCCccccCcEEEEEEEeecCC
Q 000114 2080 RYPKAKEEGWWLVVGDTKTNQLLAIK--RVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEAG 2156 (2158)
Q Consensus 2080 ~fp~~k~e~Wwlvvgd~~~~~L~~~k--rv~~~~~~~~~l~f~~P~~~G~~~~~l~~~sDsY~G~D~~~~~~l~V~~~~ 2156 (2158)
|||.+|.|+||++|.|.++.+|+.+. -.++..+.++.|.|+||+.||.|+|+|++.||||+|+||..+++++|.++.
T Consensus 405 yFPeEKqEwWW~Yi~drKsrtLlt~PyhV~tL~d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~lKldV~eAk 483 (520)
T KOG4434|consen 405 YFPEEKQEWWWLYIADRKSRTLLTMPYHVCTLKDTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKPLKLDVHEAK 483 (520)
T ss_pred CCcchhhheeeeeeecccccceecchhhhhcccccceeEEeccCCCCCCceEEEEEEecccccChhhccceeeeeccCC
Confidence 99999999999999999999999974 357788999999999999999999999999999999999999999998764
No 25
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-42 Score=422.00 Aligned_cols=335 Identities=20% Similarity=0.298 Sum_probs=257.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||..|+|||.+.+|.++.+.+ ++..|.||||||++|++|++.++..+.. .....+++.+|+++|||+||.|+.+.+
T Consensus 109 ~g~~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~--~~~~~~~P~vLVL~PTRELA~QV~~~~ 185 (519)
T KOG0331|consen 109 QGFEKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQG--KLSRGDGPIVLVLAPTRELAVQVQAEA 185 (519)
T ss_pred cCCCCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhccc--cccCCCCCeEEEEcCcHHHHHHHHHHH
Confidence 7999999999999999999977 9999999999999999999999986311 112235789999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~ 645 (2158)
.++...++++..+++|+.+...+. ..+.+|+|+||+++ |.+.... ..++++.++|+||||+|+| ++.+.++.
T Consensus 186 ~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~---~~l~~v~ylVLDEADrMldmGFe~qI~~ 262 (519)
T KOG0331|consen 186 REFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS---LNLSRVTYLVLDEADRMLDMGFEPQIRK 262 (519)
T ss_pred HHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC---ccccceeEEEeccHHhhhccccHHHHHH
Confidence 999988889999999999887765 35789999999998 6666655 4678899999999999998 79999998
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecC-C--cc-cccceeEEEeeccCChhHHHHHhhH
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN-S--YR-PVPLSQQYIGIQVKKPLQRFQLMND 721 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~-~--~r-pv~l~~~~~~~~~~~~~~~~~~l~~ 721 (2158)
|+.++ .++..|.++.|||.|. .+..+.......+...... . .. ...+.+....+. ...+...+..
T Consensus 263 Il~~i------~~~~rQtlm~saTwp~--~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~---~~~K~~~l~~ 331 (519)
T KOG0331|consen 263 ILSQI------PRPDRQTLMFSATWPK--EVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD---ETAKLRKLGK 331 (519)
T ss_pred HHHhc------CCCcccEEEEeeeccH--HHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC---HHHHHHHHHH
Confidence 88766 2344489999999993 3333332221111111111 1 00 111111111111 1112222222
Q ss_pred HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEec
Q 000114 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (2158)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hH 801 (2158)
+ ...+. ...++++||||+|++.|.+++..|...++. +...|
T Consensus 332 l-L~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~-------------------------------------a~~iH 372 (519)
T KOG0331|consen 332 L-LEDIS-SDSEGKVIIFCETKRTCDELARNLRRKGWP-------------------------------------AVAIH 372 (519)
T ss_pred H-HHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcCcc-------------------------------------eeeec
Confidence 1 11122 223679999999999999999999876533 34459
Q ss_pred CCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccE
Q 000114 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (2158)
Q Consensus 802 agl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (2158)
|+.++.+|..+++.|++|...|||||+++|||+|+|+|++||+ ||+|. ++.+|+||+||+||+| ..|.
T Consensus 373 Gd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydfP~------~vEdYVHRiGRTGRa~--~~G~ 440 (519)
T KOG0331|consen 373 GDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDFPN------NVEDYVHRIGRTGRAG--KKGT 440 (519)
T ss_pred ccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCCCC------CHHHHHhhcCccccCC--CCce
Confidence 9999999999999999999999999999999999999999999 88887 8899999999999977 7899
Q ss_pred EEEEcCCCcHHH
Q 000114 882 GIIITGHSELRY 893 (2158)
Q Consensus 882 ~iil~~~~~~~~ 893 (2158)
++.+.+..+...
T Consensus 441 A~tfft~~~~~~ 452 (519)
T KOG0331|consen 441 AITFFTSDNAKL 452 (519)
T ss_pred EEEEEeHHHHHH
Confidence 999998876544
No 26
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.5e-42 Score=456.78 Aligned_cols=354 Identities=21% Similarity=0.221 Sum_probs=268.2
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.||+.+.+++ .||++|+++|.++++.++.+ +|++++||||||||++|.+|+++.+... .+.++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla~~LPiL~~l~~~---------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAG-RHVVVATGTASGKSLAYQLPVLSALADD---------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCC-CCEEEECCCCCcHHHHHHHHHHHHHhhC---------CCcEEEEEcC
Confidence 4667777777 68999999999999998876 5699999999999999999999998753 2458999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh--hccccEEEcchhHHHH-HHh-ccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--IEETQIIVTTPEKWDI-ITR-KSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~--~~~~~IiV~TPekld~-l~r-~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
||||+.|+.+.++++. ..++++..++|+.....+. ..+++|+|+||+.+.. +.. .......++++++|||||+|.
T Consensus 90 traLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 90 TKALAADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 9999999999999875 4578999999998755432 3568999999998742 222 111124578999999999999
Q ss_pred cccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeecc-----
Q 000114 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV----- 709 (2158)
Q Consensus 635 l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~----- 709 (2158)
+.+.+|..+..++.|+.+.....+.++|++++|||++|..+++.++... +....+....|.......+....
T Consensus 169 ~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~---~~~~i~~~~~~~~~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 169 YRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGA---PVVAVTEDGSPRGARTVALWEPPLTELT 245 (742)
T ss_pred ccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCC---CeEEECCCCCCcCceEEEEecCCccccc
Confidence 9878999999999999888777778899999999999998888776543 23334444334332221111110
Q ss_pred -CC--hhHH--HHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcc
Q 000114 710 -KK--PLQR--FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2158)
Q Consensus 710 -~~--~~~~--~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 784 (2158)
.. ...+ .......+...+ . .+.++||||+||+.|+.++..|........
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~-~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~----------------------- 299 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLV-A--EGARTLTFVRSRRGAELVAAIARRLLGEVD----------------------- 299 (742)
T ss_pred cccccccccchHHHHHHHHHHHH-H--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-----------------------
Confidence 00 0000 001111121111 1 267999999999999999998876421100
Q ss_pred CcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHH
Q 000114 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 785 ~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
..+..++..|||||++++|..+++.|++|++++||||+++++|||+|++++||+ |+.|. +..+|
T Consensus 300 ------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~~P~------s~~~y 363 (742)
T TIGR03817 300 ------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI----AGFPG------TRASL 363 (742)
T ss_pred ------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE----eCCCC------CHHHH
Confidence 012345788999999999999999999999999999999999999999999999 66654 78899
Q ss_pred HHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 865 MQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
+||+|||||.| ..|.+++++..+..+
T Consensus 364 ~qRiGRaGR~G--~~g~ai~v~~~~~~d 389 (742)
T TIGR03817 364 WQQAGRAGRRG--QGALVVLVARDDPLD 389 (742)
T ss_pred HHhccccCCCC--CCcEEEEEeCCChHH
Confidence 99999999988 569999998765443
No 27
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=9.8e-41 Score=431.77 Aligned_cols=441 Identities=21% Similarity=0.284 Sum_probs=338.1
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc---CCCceEEEEEcccHHHHHH
Q 000114 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---~~~~~~~v~IaP~raLa~q 1405 (2158)
+.+.+.|. .|..|||.|.++|+.++. +.|+||+||||||||++|.||++..+.... +.++..||||+|.|||..+
T Consensus 10 ~~v~~~~~~~~~~~t~~Q~~a~~~i~~-G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 10 PRVREWFKRKFTSLTPPQRYAIPEIHS-GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhC-CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHH
Confidence 34455554 699999999999999985 677999999999999999999999998852 2345799999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGG 1481 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g 1481 (2158)
+..++. ..+..+|+.|..-|||++...+ ..+.+||+|+|||.+..++..-+.+..+.++.++||||+|.+.+ .+|
T Consensus 89 i~~rL~-~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG 167 (814)
T COG1201 89 IRRRLE-EPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRG 167 (814)
T ss_pred HHHHHH-HHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccc
Confidence 999998 4455679999999999987633 33445999999999988877656777899999999999997765 799
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCC-CceEecCCCCcccccEEEEecccccchHHHHHhcC
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~-~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
..+-..+.|++.+.. +.|.||||||+.+.+++++||+... ...+.-.+..+...+.+.......... ....
T Consensus 168 ~~Lsl~LeRL~~l~~----~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~----~~~~ 239 (814)
T COG1201 168 VQLALSLERLRELAG----DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD----EELW 239 (814)
T ss_pred hhhhhhHHHHHhhCc----ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc----cchh
Confidence 999999999998853 7899999999999999999998875 333333344455555554433332222 1223
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
...+..+...+...+.+|||+|||.+++.++..|.. .....+..||
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~----------------------------------~~~~~i~~HH 285 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKK----------------------------------LGPDIIEVHH 285 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHH----------------------------------hcCCceeeec
Confidence 344555555656778999999999999999976632 2235699999
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
|.++.+.|..+++.|++|+++++|||++++-|||+..+..|| +...|.+++.++||+||+|+.- +...+
T Consensus 286 gSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVI----------q~~SP~sV~r~lQRiGRsgHr~-~~~Sk 354 (814)
T COG1201 286 GSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVI----------QLGSPKSVNRFLQRIGRAGHRL-GEVSK 354 (814)
T ss_pred ccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEE----------EeCCcHHHHHHhHhcccccccc-CCccc
Confidence 999999999999999999999999999999999999999999 5677889999999999999865 67788
Q ss_pred EEEEecCChHHHHH----------HHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCc
Q 000114 1721 CVILCHAPRKEYYK----------KFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYY 1790 (2158)
Q Consensus 1721 ~iil~~~~~~~~~~----------k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y 1790 (2158)
+++++.+ ..+.+. ..+....+.+-.| ..|..|+++.+... --+..++.+.++.+|.|+.|..
T Consensus 355 g~ii~~~-r~dllE~~vi~~~a~~g~le~~~i~~~~L-DVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~L~~----- 426 (814)
T COG1201 355 GIIIAED-RDDLLECLVLADLALEGKLERIKIPKNPL-DVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYADLSR----- 426 (814)
T ss_pred EEEEecC-HHHHHHHHHHHHHHHhCCcccCCCCCcch-hHHHHHHHHHHhhC-cCCHHHHHHHHHhccccccCCH-----
Confidence 8888877 334332 2222233344444 55667777777766 6688899999999999975432
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHh--CCCeeEcCCCcccccccchhhhhcccChhhH
Q 000114 1791 NLQGVSHRHLSDHLSELVENTISDLEA--SKCIIIEEDMDLSPSNHGMIASYYYISYTTI 1848 (2158)
Q Consensus 1791 ~~~~~~~~~~~~~l~~lve~~l~~L~~--~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~ 1848 (2158)
+-.+++++.|.. .+.+.+..+.+-.-........+||.+..|+
T Consensus 427 ---------------e~f~~v~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~y~~n~~tI 471 (814)
T COG1201 427 ---------------EDFRLVLRYLAGEKNVYAKIWLDEDGLFGRGKGTRMIYYMNYGTI 471 (814)
T ss_pred ---------------HHHHHHHHHHhhcccceeEEeecCcceeccCccceeeeeeccccc
Confidence 556777888887 7777765443311222344445666655554
No 28
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-42 Score=399.42 Aligned_cols=347 Identities=21% Similarity=0.322 Sum_probs=279.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||..|+|||.++||.++.+.+ ++.||.||||||.+|++|+|..+.-.+.. ....+||+++|||+|+.|++..+
T Consensus 199 lGy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TRVLVL~PTRELaiQv~sV~ 272 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYRPKK-----VAATRVLVLVPTRELAIQVHSVT 272 (691)
T ss_pred cCCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcCccc-----CcceeEEEEeccHHHHHHHHHHH
Confidence 3999999999999999999977 99999999999999999999998754321 24568999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~ 645 (2158)
+++.....|.|+...|+.++..+. ...++|+|+||+++ |++. ++.. ..+.++.++|+|||++|++ .+...+..
T Consensus 273 ~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlr-Ns~s-f~ldsiEVLvlDEADRMLeegFademnE 350 (691)
T KOG0338|consen 273 KQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLR-NSPS-FNLDSIEVLVLDEADRMLEEGFADEMNE 350 (691)
T ss_pred HHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhc-cCCC-ccccceeEEEechHHHHHHHHHHHHHHH
Confidence 999888899999999999987765 46899999999998 5554 4432 5688999999999999987 57666666
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecC--CcccccceeEEEeeccCChhHHHHHhhHHH
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN--SYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~--~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~ 723 (2158)
|+.. .+.+.|.+++|||+. +.|.......+.+++..|.. ...+..|.+.|+.+.......+-..+..++
T Consensus 351 ii~l-------cpk~RQTmLFSATMt--eeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~ 421 (691)
T KOG0338|consen 351 IIRL-------CPKNRQTMLFSATMT--EEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLI 421 (691)
T ss_pred HHHh-------ccccccceeehhhhH--HHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHH
Confidence 6543 467889999999997 67777777777777665543 445566888888777655443322222222
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCC
Q 000114 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2158)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHag 803 (2158)
-. .-...+||||.|++.|.++--.|--.|.. ++-.||.
T Consensus 422 ~r-----tf~~~~ivFv~tKk~AHRl~IllGLlgl~-------------------------------------agElHGs 459 (691)
T KOG0338|consen 422 TR-----TFQDRTIVFVRTKKQAHRLRILLGLLGLK-------------------------------------AGELHGS 459 (691)
T ss_pred HH-----hcccceEEEEehHHHHHHHHHHHHHhhch-------------------------------------hhhhccc
Confidence 21 12567999999999999887766555544 3444999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEE
Q 000114 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2158)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2158)
|++.+|...++.|++++++|||||++++||+|++++.+||| |+.|. ++..|+||+||+.|+| ..|.+|
T Consensus 460 LtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~mP~------t~e~Y~HRVGRTARAG--RaGrsV 527 (691)
T KOG0338|consen 460 LTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YAMPK------TIEHYLHRVGRTARAG--RAGRSV 527 (691)
T ss_pred ccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe----ccCch------hHHHHHHHhhhhhhcc--cCcceE
Confidence 99999999999999999999999999999999999999999 66655 7889999999999998 779999
Q ss_pred EEcCCCcHHHHHHhhcCCCcccchh
Q 000114 884 IITGHSELRYYLSLMNQQLPIESQF 908 (2158)
Q Consensus 884 il~~~~~~~~y~~ll~~~~pieS~l 908 (2158)
.++..++...++..+....-..+.+
T Consensus 528 tlvgE~dRkllK~iik~~~~a~~kl 552 (691)
T KOG0338|consen 528 TLVGESDRKLLKEIIKSSTKAGSKL 552 (691)
T ss_pred EEeccccHHHHHHHHhhhhhcccch
Confidence 9999999888877665543333333
No 29
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.4e-41 Score=416.54 Aligned_cols=403 Identities=27% Similarity=0.366 Sum_probs=310.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|-.+|++||-....+ +.|+|.|+|.||||++|..+|.-.-.. ..|+||.+|.|||.+|.++.|+..|
T Consensus 297 elD~FQk~Ai~~lerg-~SVFVAAHTSAGKTvVAEYAialaq~h-----------~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERG-DSVFVAAHTSAGKTVVAEYAIALAQKH-----------MTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CccHHHHHHHHHHHcC-CeEEEEecCCCCcchHHHHHHHHHHhh-----------ccceEecchhhhhccchHHHHHHhc
Confidence 7889999999976555 669999999999999999998665433 3489999999999999999999988
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (2158)
+. |+.+|||.+.+. .+.++|+|.|.+..+.-+.. ..++++.+||+||+|.+.| +||.+||.++--
T Consensus 365 ~D----vgLlTGDvqinP----eAsCLIMTTEILRsMLYrga--dliRDvE~VIFDEVHYiND~eRGvVWEEViIM---- 430 (1248)
T KOG0947|consen 365 GD----VGLLTGDVQINP----EASCLIMTTEILRSMLYRGA--DLIRDVEFVIFDEVHYINDVERGVVWEEVIIM---- 430 (1248)
T ss_pred cc----cceeecceeeCC----CcceEeehHHHHHHHHhccc--chhhccceEEEeeeeecccccccccceeeeee----
Confidence 75 458999998876 58899999998855554444 4678899999999999999 899999988753
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCC------------------hhH-
Q 000114 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK------------------PLQ- 714 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~------------------~~~- 714 (2158)
.+.++++|+||||+||..+++.|++....+.+++.+..-|||||+..+..-..-. ...
T Consensus 431 ---lP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 431 ---LPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ---ccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 4789999999999999999999999987788888888899999987554210000 000
Q ss_pred ---HH---------------------HHh------------hH--HHHHHHHHHhC---CCeEEEEecChHHHHHHHHHH
Q 000114 715 ---RF---------------------QLM------------ND--LCYEKVVAVAG---KHQVLIFVHSRKETAKTARAI 753 (2158)
Q Consensus 715 ---~~---------------------~~l------------~~--~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L 753 (2158)
+. ... .. ..|-.+..+.. --|++|||-||+.|...|..|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 00 000 00 12222333333 238999999999999999999
Q ss_pred HHHhhcccccccccccCchhHHHHHhhhhcc--Cc------chhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEE
Q 000114 754 RDTALENDTLGRFLKEDSVSREILQSHTDMV--KS------NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825 (2158)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~------~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLV 825 (2158)
.........- .+.-.-.+.+..... .+ -.+.+++.+|+++||||+-+--++.|+-+|..|-++||+
T Consensus 588 ~~~nL~~~~E------KseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLF 661 (1248)
T KOG0947|consen 588 TNLNLTDSKE------KSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLF 661 (1248)
T ss_pred hccCcccchh------HHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEe
Confidence 8754332110 000001111111111 12 356788899999999999999999999999999999999
Q ss_pred echhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC--cHHHHHHh-hcCCC
Q 000114 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLSL-MNQQL 902 (2158)
Q Consensus 826 aT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--~~~~y~~l-l~~~~ 902 (2158)
||.|+|+|||.|+.+||+.+....|+.. +.++.+-+|.||+|||||.|.|..|.+|+++... +...+..+ +..+.
T Consensus 662 ATETFAMGVNMPARtvVF~Sl~KhDG~e--fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~ 739 (1248)
T KOG0947|consen 662 ATETFAMGVNMPARTVVFSSLRKHDGNE--FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPT 739 (1248)
T ss_pred ehhhhhhhcCCCceeEEeeehhhccCcc--eeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCc
Confidence 9999999999999999999988888764 7899999999999999999999999999999874 66677775 67889
Q ss_pred cccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhH
Q 000114 903 PIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTY 939 (2158)
Q Consensus 903 pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~ 939 (2158)
+++|||.-.....||---+.. -.+-+.++++|
T Consensus 740 ~L~SQFRlTY~MILnLLRve~-----lrvEdm~krSf 771 (1248)
T KOG0947|consen 740 RLESQFRLTYGMILNLLRVEA-----LRVEDMMKRSF 771 (1248)
T ss_pred hhhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 999999987766666432211 23445666666
No 30
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-41 Score=385.95 Aligned_cols=341 Identities=22% Similarity=0.303 Sum_probs=266.5
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.+.++.+++.-. +++.|++||++++|.++.+++ ||..|.||||||.+|.+||++++.+.+. .+.+++++|||+||.
T Consensus 67 gv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p~--~~~~lVLtPtRELA~ 143 (476)
T KOG0330|consen 67 GVHPELLEACQELGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEPK--LFFALVLTPTRELAQ 143 (476)
T ss_pred CcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCCC--CceEEEecCcHHHHH
Confidence 345566666655 799999999999999998777 9999999999999999999999998432 369999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+...+. .++...|++|..+.|+.... ....+++||+|+||+++..++...+. ..+.+++++|+||||.++++.
T Consensus 144 QI~e~fe-~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg-f~le~lk~LVlDEADrlLd~d- 220 (476)
T KOG0330|consen 144 QIAEQFE-ALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG-FSLEQLKFLVLDEADRLLDMD- 220 (476)
T ss_pred HHHHHHH-HhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC-ccHHHhHHHhhchHHhhhhhh-
Confidence 9999998 78888899999999997754 44567889999999999888875443 368899999999999998765
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHH---Hh
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM---QA 1558 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~---~~ 1558 (2158)
+...+.+|...++...|.+++|||++.- +.+...+... +|+.+...-......+..+.+ ..
T Consensus 221 -----F~~~ld~ILk~ip~erqt~LfsATMt~k--v~kL~rasl~---------~p~~v~~s~ky~tv~~lkQ~ylfv~~ 284 (476)
T KOG0330|consen 221 -----FEEELDYILKVIPRERQTFLFSATMTKK--VRKLQRASLD---------NPVKVAVSSKYQTVDHLKQTYLFVPG 284 (476)
T ss_pred -----hHHHHHHHHHhcCccceEEEEEeecchh--hHHHHhhccC---------CCeEEeccchhcchHHhhhheEeccc
Confidence 4445555666668899999999999852 2222222211 222222111111111111111 11
Q ss_pred cChHHHH-HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1559 MTKPTFT-AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1559 ~~k~~~~-~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
-.++.|. .+++. ..+.++||||++...++.++..|. .++....
T Consensus 285 k~K~~yLV~ll~e-~~g~s~iVF~~t~~tt~~la~~L~-----------------------------------~lg~~a~ 328 (476)
T KOG0330|consen 285 KDKDTYLVYLLNE-LAGNSVIVFCNTCNTTRFLALLLR-----------------------------------NLGFQAI 328 (476)
T ss_pred cccchhHHHHHHh-hcCCcEEEEEeccchHHHHHHHHH-----------------------------------hcCccee
Confidence 1233332 33344 567999999999999999885552 3566788
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
.+||.|++..|.-.++.|++|...|||||++++||+|+|.+.+|| |+++|....||+||+||+||.| .
T Consensus 329 ~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VV----------NyDiP~~skDYIHRvGRtaRaG--r 396 (476)
T KOG0330|consen 329 PLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVV----------NYDIPTHSKDYIHRVGRTARAG--R 396 (476)
T ss_pred cccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEE----------ecCCCCcHHHHHHHcccccccC--C
Confidence 999999999999999999999999999999999999999999999 8899999999999999999998 8
Q ss_pred ceEEEEEecCChHHHHHHH
Q 000114 1718 SGKCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~k~ 1736 (2158)
+|.++.+++.-+.+.|.+.
T Consensus 397 sG~~ItlVtqyDve~~qrI 415 (476)
T KOG0330|consen 397 SGKAITLVTQYDVELVQRI 415 (476)
T ss_pred CcceEEEEehhhhHHHHHH
Confidence 9999999998877777654
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3e-40 Score=442.38 Aligned_cols=352 Identities=18% Similarity=0.237 Sum_probs=264.9
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|++...+.+.. ||..|+++|.++++.++++ +|++++||||||||+||.+|+++.+.. .++ .++|||+|||||+.|
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla~~LPiL~~l~~-~~~--~~aL~l~PtraLa~q 96 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAG-RHVVVATGTASGKSLAYQLPVLSALAD-DPR--ATALYLAPTKALAAD 96 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCC-CCEEEECCCCCcHHHHHHHHHHHHHhh-CCC--cEEEEEcChHHHHHH
Confidence 33444455544 7999999999999999874 569999999999999999999999876 233 499999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhh--cccCCcEEEeCHHHHHH-HHh---hhhccccccceeEEEecccccccCC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK--LLEKGQIIISTPEKWDA-LSR---RWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~--~l~~~~IIV~TPe~l~~-l~r---~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
+++.++ .++ ..++++..++|+++.+.+ ...+++|||+||+++.. ++. +|. ..++++++|||||||.+.+.
T Consensus 97 ~~~~l~-~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~--~~l~~l~~vViDEah~~~g~ 172 (742)
T TIGR03817 97 QLRAVR-ELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWA--RFLRRLRYVVIDECHSYRGV 172 (742)
T ss_pred HHHHHH-Hhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHH--HHHhcCCEEEEeChhhccCc
Confidence 999998 555 347899999999876533 33467999999999863 221 232 34889999999999999777
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEeccccc--chHH---
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT--NFEA--- 1554 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~--~~~~--- 1554 (2158)
.|..+..++.|++.+....+.+.|+|++|||++|..++++++...+..+ ...+..|....... .+... ....
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~--i~~~~~~~~~~~~~-~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVA--VTEDGSPRGARTVA-LWEPPLTELTGENG 249 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEE--ECCCCCCcCceEEE-EecCCccccccccc
Confidence 8889999999999998888888999999999999888887765543222 22222222211111 00000 0000
Q ss_pred -HH-HhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000114 1555 -RM-QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2158)
Q Consensus 1555 -~~-~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2158)
.. ..........+...+..+.++||||+|++.|+.++..|...... ....+
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~---------------------------~~~~l 302 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGE---------------------------VDPDL 302 (742)
T ss_pred cccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHh---------------------------hcccc
Confidence 00 00001122223333355789999999999999999877432110 01123
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
+.++..||||+++++|+.+++.|++|++++||||+++++|||+|++.+|| ++..|.++.+|+||+|||||
T Consensus 303 ~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI----------~~~~P~s~~~y~qRiGRaGR 372 (742)
T TIGR03817 303 AERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVV----------IAGFPGTRASLWQQAGRAGR 372 (742)
T ss_pred ccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEE----------EeCCCCCHHHHHHhccccCC
Confidence 45688999999999999999999999999999999999999999999999 67788899999999999999
Q ss_pred CCCCCceEEEEEecCC
Q 000114 1713 PLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~ 1728 (2158)
.| ..|.+++++.+.
T Consensus 373 ~G--~~g~ai~v~~~~ 386 (742)
T TIGR03817 373 RG--QGALVVLVARDD 386 (742)
T ss_pred CC--CCcEEEEEeCCC
Confidence 87 678999888754
No 32
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.8e-40 Score=432.84 Aligned_cols=346 Identities=21% Similarity=0.272 Sum_probs=255.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.||+++...+ .||+.|||+|.++++.++.+ +|++++||||||||++|++|++..+...... ......++++|||+|
T Consensus 127 ~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~-~~~~~~~~~aLIL~P 204 (518)
T PLN00206 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCCTIRSG-HPSEQRNPLAMVLTP 204 (518)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHHhhccc-cccccCCceEEEEeC
Confidence 4677777777 69999999999999999876 4699999999999999999999887643211 111225679999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|++||.|+.+.++.+.+..++++..+.|+.....+. ..+++|+|+||+++ +.+.++. ..++++++|||||||+
T Consensus 205 TreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~---~~l~~v~~lViDEad~ 281 (518)
T PLN00206 205 TRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHD---IELDNVSVLVLDEVDC 281 (518)
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCC---ccchheeEEEeecHHH
Confidence 999999999999988777888888888877655432 34689999999998 5555442 5678899999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCCh-HHHHHHHhccccCceEEecCCccccc-ceeEEEeeccCC
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYRPVP-LSQQYIGIQVKK 711 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~-~dv~~~l~~~~~~~~~~f~~~~rpv~-l~~~~~~~~~~~ 711 (2158)
+.+ ++.+.+..++.. .+..|++++|||+++. +.++.++...+ ..+......++.. +.+.++.+....
T Consensus 282 ml~~gf~~~i~~i~~~--------l~~~q~l~~SATl~~~v~~l~~~~~~~~--~~i~~~~~~~~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 282 MLERGFRDQVMQIFQA--------LSQPQVLLFSATVSPEVEKFASSLAKDI--ILISIGNPNRPNKAVKQLAIWVETKQ 351 (518)
T ss_pred HhhcchHHHHHHHHHh--------CCCCcEEEEEeeCCHHHHHHHHHhCCCC--EEEEeCCCCCCCcceeEEEEeccchh
Confidence 887 455554444332 2467999999999853 34444443221 1223333333332 222222222211
Q ss_pred hhHHHHHhhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 712 PLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 712 ~~~~~~~l~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
+... +++.+..... .+++||||+++..+..++..|....
T Consensus 352 ---k~~~----l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~--------------------------------- 391 (518)
T PLN00206 352 ---KKQK----LFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT--------------------------------- 391 (518)
T ss_pred ---HHHH----HHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc---------------------------------
Confidence 1111 1222222111 4689999999999999988776421
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcc
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2158)
...+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ ||++. ++.+|+||+||
T Consensus 392 ---g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~P~------s~~~yihRiGR 458 (518)
T PLN00206 392 ---GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII----FDMPN------TIKEYIHQIGR 458 (518)
T ss_pred ---CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----eCCCC------CHHHHHHhccc
Confidence 123567899999999999999999999999999999999999999999999 77665 88899999999
Q ss_pred cCCCCCCCccEEEEEcCCCcHHHHHH
Q 000114 871 AGRPQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
|||.| ..|.++++++.++...+..
T Consensus 459 aGR~g--~~G~ai~f~~~~~~~~~~~ 482 (518)
T PLN00206 459 ASRMG--EKGTAIVFVNEEDRNLFPE 482 (518)
T ss_pred cccCC--CCeEEEEEEchhHHHHHHH
Confidence 99987 6799999998877655443
No 33
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.5e-40 Score=428.91 Aligned_cols=345 Identities=19% Similarity=0.275 Sum_probs=257.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++++...+ .||..||++|.++++.++.+. |+|++||||||||++|++|+++.+...... ......+++|||+|
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~-dvlv~apTGsGKTla~~lpil~~l~~~~~~--~~~~~~~~aLil~P 83 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGR-DLMASAQTGTGKTAGFTLPLLQHLITRQPH--AKGRRPVRALILTP 83 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHhhhcccc--cccCCCceEEEEeC
Confidence 3567777766 799999999999999998875 599999999999999999999998654221 01123468999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
|++||.|+++.+..+....++++..++|+.+.+.+. ...++|+|+||+++..+..... ..++++++|||||||++
T Consensus 84 treLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~--~~l~~v~~lViDEah~l 161 (456)
T PRK10590 84 TRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA--VKLDQVEILVLDEADRM 161 (456)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC--cccccceEEEeecHHHH
Confidence 999999999999998888899999999998766543 3478999999999844433322 45788999999999999
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn-~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
.+ .+...+..++.. .+...|++++|||+++ ..+++.++..++. .+...........+.+.+..+...
T Consensus 162 l~~~~~~~i~~il~~-------l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~i~~~~~~~~~~--- 230 (456)
T PRK10590 162 LDMGFIHDIRRVLAK-------LPAKRQNLLFSATFSDDIKALAEKLLHNPL-EIEVARRNTASEQVTQHVHFVDKK--- 230 (456)
T ss_pred hccccHHHHHHHHHh-------CCccCeEEEEeCCCcHHHHHHHHHHcCCCe-EEEEecccccccceeEEEEEcCHH---
Confidence 87 455555544433 3567789999999986 3455544433321 111111111222233333322211
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
.+... ...+.......++||||+++..+..++..|...+
T Consensus 231 ~k~~~-----l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g------------------------------------ 269 (456)
T PRK10590 231 RKREL-----LSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG------------------------------------ 269 (456)
T ss_pred HHHHH-----HHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC------------------------------------
Confidence 11111 1223333345789999999999999999887543
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. ++.+|+||+|||||
T Consensus 270 -~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~P~------~~~~yvqR~GRaGR 338 (456)
T PRK10590 270 -IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN----YELPN------VPEDYVHRIGRTGR 338 (456)
T ss_pred -CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCCCC------CHHHhhhhcccccc
Confidence 23567799999999999999999999999999999999999999999999 77665 78899999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHHH
Q 000114 874 PQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
.| ..|.+++++...+...+.
T Consensus 339 ~g--~~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 339 AA--ATGEALSLVCVDEHKLLR 358 (456)
T ss_pred CC--CCeeEEEEecHHHHHHHH
Confidence 87 669999998887755443
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-40 Score=425.78 Aligned_cols=346 Identities=15% Similarity=0.206 Sum_probs=253.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++...+ .||..|+|+|++|++.++.+. |++++||||||||++|++|+++.+.......+ ....++++||++||
T Consensus 15 l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~~~lil~Pt 92 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPIQALALPLTLAGR-DVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQPRALIMAPT 92 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-cEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCceEEEECCc
Confidence 566666666 799999999999999999875 59999999999999999999998875432111 11245799999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++||.|+++.+..+....|+++..++|+.....+. ..+++|+|+||+++..+.+.. ...+.++++|||||||++.
T Consensus 93 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--~~~l~~v~~lViDEad~l~ 170 (423)
T PRK04837 93 RELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN--HINLGAIQVVVLDEADRMF 170 (423)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--CcccccccEEEEecHHHHh
Confidence 99999999999998888899999999987655432 246799999999984333332 2457889999999999988
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE-ecCCc-ccccceeEEEeeccCChh
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSY-RPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~-f~~~~-rpv~l~~~~~~~~~~~~~ 713 (2158)
+ ++...+..++.++ . .....+.+++|||++. .+..+.......+.+. ..... ....+.+.++.. ...
T Consensus 171 ~~~f~~~i~~i~~~~----~-~~~~~~~~l~SAT~~~--~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~---~~~ 240 (423)
T PRK04837 171 DLGFIKDIRWLFRRM----P-PANQRLNMLFSATLSY--RVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP---SNE 240 (423)
T ss_pred hcccHHHHHHHHHhC----C-CccceeEEEEeccCCH--HHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC---CHH
Confidence 7 5656655554433 1 1134567899999984 3333332222222222 22111 112222222211 111
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
.+...+. .+.......++||||++++.|+.++..|...+
T Consensus 241 ~k~~~l~-----~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g------------------------------------ 279 (423)
T PRK04837 241 EKMRLLQ-----TLIEEEWPDRAIIFANTKHRCEEIWGHLAADG------------------------------------ 279 (423)
T ss_pred HHHHHHH-----HHHHhcCCCeEEEEECCHHHHHHHHHHHHhCC------------------------------------
Confidence 2222221 12222336799999999999999999887543
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
..+.++||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ ||+|. +..+|+||+|||||
T Consensus 280 -~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~P~------s~~~yiqR~GR~gR 348 (423)
T PRK04837 280 -HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YDLPD------DCEDYVHRIGRTGR 348 (423)
T ss_pred -CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eCCCC------chhheEeccccccC
Confidence 34678899999999999999999999999999999999999999999999 66654 67789999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHHH
Q 000114 874 PQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
.| ..|.|+.+.++.+...+.
T Consensus 349 ~G--~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 349 AG--ASGHSISLACEEYALNLP 368 (423)
T ss_pred CC--CCeeEEEEeCHHHHHHHH
Confidence 88 679999999887654444
No 35
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.5e-40 Score=432.34 Aligned_cols=343 Identities=18% Similarity=0.251 Sum_probs=257.2
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.+|+++.+.+ .||++|+++|.+++|.++.+++ +|++||||||||++|++|++..+...... ....++.+|||+|
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~d-vI~~ApTGSGKTlaylLP~l~~i~~~~~~---~~~~gp~~LIL~P 211 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRD-MIGIAETGSGKTLAFLLPAIVHINAQPLL---RYGDGPIVLVLAP 211 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCC-EEEEeCCCChHHHHHHHHHHHHHHhcccc---cCCCCcEEEEECC
Confidence 4688888777 6999999999999999998865 99999999999999999999887653211 1124578999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|++||.|+.+.+.++....++++..++|+.....+. ...++|+|+||+++ +.+.+.. ..+.++++|||||||+
T Consensus 212 TreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~---~~l~~v~~lViDEAd~ 288 (545)
T PTZ00110 212 TRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV---TNLRRVTYLVLDEADR 288 (545)
T ss_pred hHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC---CChhhCcEEEeehHHh
Confidence 999999999999998887889999999987655432 34789999999998 5554432 4578899999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEEecCCcc---cccceeEEEeecc
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR---PVPLSQQYIGIQV 709 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn-~~dv~~~l~~~~~~~~~~f~~~~r---pv~l~~~~~~~~~ 709 (2158)
+.+ .+.+.+..++.. ..+..|++++|||+|. .+.++..+... .++........ ...+.+.+..+..
T Consensus 289 mld~gf~~~i~~il~~-------~~~~~q~l~~SAT~p~~v~~l~~~l~~~--~~v~i~vg~~~l~~~~~i~q~~~~~~~ 359 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQ-------IRPDRQTLMWSATWPKEVQSLARDLCKE--EPVHVNVGSLDLTACHNIKQEVFVVEE 359 (545)
T ss_pred hhhcchHHHHHHHHHh-------CCCCCeEEEEEeCCCHHHHHHHHHHhcc--CCEEEEECCCccccCCCeeEEEEEEec
Confidence 987 566666655543 3567899999999984 23333333211 12222111111 1123333333322
Q ss_pred CChhHHHHHhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcch
Q 000114 710 KKPLQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2158)
Q Consensus 710 ~~~~~~~~~l~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 788 (2158)
. .+...+..+ +.... .+.++||||++++.|..++..|...+.
T Consensus 360 ~---~k~~~L~~l----l~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~------------------------------ 402 (545)
T PTZ00110 360 H---EKRGKLKML----LQRIMRDGDKILIFVETKKGADFLTKELRLDGW------------------------------ 402 (545)
T ss_pred h---hHHHHHHHH----HHHhcccCCeEEEEecChHHHHHHHHHHHHcCC------------------------------
Confidence 2 122222222 22222 467999999999999999998875432
Q ss_pred hhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhh
Q 000114 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2158)
Q Consensus 789 l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2158)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.+. ++.+|+||+
T Consensus 403 -------~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~P~------s~~~yvqRi 465 (545)
T PTZ00110 403 -------PALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDFPN------QIEDYVHRI 465 (545)
T ss_pred -------cEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCCCC------CHHHHHHHh
Confidence 2456799999999999999999999999999999999999999999999 77765 788999999
Q ss_pred cccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 869 GRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
|||||.| ..|.|+++++..+.....
T Consensus 466 GRtGR~G--~~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 466 GRTGRAG--AKGASYTFLTPDKYRLAR 490 (545)
T ss_pred cccccCC--CCceEEEEECcchHHHHH
Confidence 9999987 679999999987755443
No 36
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.6e-40 Score=427.65 Aligned_cols=336 Identities=21% Similarity=0.326 Sum_probs=257.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++...+ .||++|||+|.+|++.++.++ |++++||||||||++|++|+++.+.... ...+++|++||
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~-dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~lil~Pt 81 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGK-DVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQALVLCPT 81 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceEEEEeCC
Confidence 566666665 689999999999999998875 5999999999999999999999885432 24589999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
++||.|+.+.++.+.... ++++..++|+.+...+. ...++|+|+||++|..+.++.. ..++++++||+||||++
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~--~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT--LDLDALNTLVLDEADRM 159 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC--ccHHHCCEEEEECHHHH
Confidence 999999999998876544 78999999998765442 3578999999999844444332 45789999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce-EEecCCcccccceeEEEeeccCChh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~-~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
.+ .+...++.++.. .+...|++++|||+|+ .+..+.......+. +..........+.+.++.+....
T Consensus 160 l~~g~~~~l~~i~~~-------~~~~~q~ll~SAT~~~--~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~-- 228 (460)
T PRK11776 160 LDMGFQDAIDAIIRQ-------APARRQTLLFSATYPE--GIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDE-- 228 (460)
T ss_pred hCcCcHHHHHHHHHh-------CCcccEEEEEEecCcH--HHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHH--
Confidence 87 567776666554 3567899999999984 34443332222222 22333333333555555443322
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
+...+.. ++......++||||+|++.+..++..|...+
T Consensus 229 -k~~~l~~-----ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~------------------------------------ 266 (460)
T PRK11776 229 -RLPALQR-----LLLHHQPESCVVFCNTKKECQEVADALNAQG------------------------------------ 266 (460)
T ss_pred -HHHHHHH-----HHHhcCCCceEEEECCHHHHHHHHHHHHhCC------------------------------------
Confidence 2322222 2233446789999999999999999987643
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. +..+|+||+|||||
T Consensus 267 -~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d~p~------~~~~yiqR~GRtGR 335 (460)
T PRK11776 267 -FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN----YELAR------DPEVHVHRIGRTGR 335 (460)
T ss_pred -CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE----ecCCC------CHhHhhhhcccccC
Confidence 24677899999999999999999999999999999999999999999999 55443 56689999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHH
Q 000114 874 PQYDSYGEGIIITGHSELRYY 894 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y 894 (2158)
.| ..|.|+.+++..+...+
T Consensus 336 ~g--~~G~ai~l~~~~e~~~~ 354 (460)
T PRK11776 336 AG--SKGLALSLVAPEEMQRA 354 (460)
T ss_pred CC--CcceEEEEEchhHHHHH
Confidence 87 66999999988775543
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.6e-40 Score=430.02 Aligned_cols=345 Identities=15% Similarity=0.219 Sum_probs=254.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++...+ .||..|||+|.++|+.++.+.+ ++++||||||||++|++|+++.+....... ......+++|||+||
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~D-vi~~ApTGSGKTlafllpil~~l~~~~~~~-~~~~~~~raLIl~PT 93 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPGGD-VAGQAQTGTGKTLAFLVAVMNRLLSRPALA-DRKPEDPRALILAPT 93 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEEcCCCCcHHHHHHHHHHHHHHhccccc-ccccCCceEEEEeCc
Confidence 566666666 7999999999999999998755 999999999999999999999886532110 011135799999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++||.|+++.+.++....++++..++|+.....+. ...++|+|+||++|..+.+... ...+..+++|||||||++.
T Consensus 94 reLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 94 RELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999999998888899999999988765432 3467999999999843333321 1346789999999999988
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc-eEEec-CCcccccceeEEEeeccCChh
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFD-NSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~-~~~f~-~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
+ .+...++.++.++. .....|++++|||+++ .+..+.......+ .+.+. .......+.+.++... ..
T Consensus 173 d~gf~~~i~~il~~lp-----~~~~~q~ll~SATl~~--~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~---~~ 242 (572)
T PRK04537 173 DLGFIKDIRFLLRRMP-----ERGTRQTLLFSATLSH--RVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA---DE 242 (572)
T ss_pred hcchHHHHHHHHHhcc-----cccCceEEEEeCCccH--HHHHHHHHHhcCCcEEEeccccccccceeEEEEecC---HH
Confidence 7 56666666655441 1236789999999985 2333322221111 12222 2222223333333221 11
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
.+...+. .+.....+.++||||+|+..++.++..|...+
T Consensus 243 ~k~~~L~-----~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g------------------------------------ 281 (572)
T PRK04537 243 EKQTLLL-----GLLSRSEGARTMVFVNTKAFVERVARTLERHG------------------------------------ 281 (572)
T ss_pred HHHHHHH-----HHHhcccCCcEEEEeCCHHHHHHHHHHHHHcC------------------------------------
Confidence 2222111 22233346799999999999999999887643
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.+. +..+|+||+|||||
T Consensus 282 -~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd~P~------s~~~yvqRiGRaGR 350 (572)
T PRK04537 282 -YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN----YDLPF------DAEDYVHRIGRTAR 350 (572)
T ss_pred -CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE----cCCCC------CHHHHhhhhccccc
Confidence 24778899999999999999999999999999999999999999999999 55553 77899999999999
Q ss_pred CCCCCccEEEEEcCCCcHHH
Q 000114 874 PQYDSYGEGIIITGHSELRY 893 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~ 893 (2158)
.| ..|.|++++...+...
T Consensus 351 ~G--~~G~ai~~~~~~~~~~ 368 (572)
T PRK04537 351 LG--EEGDAISFACERYAMS 368 (572)
T ss_pred CC--CCceEEEEecHHHHHH
Confidence 88 5699999988765443
No 38
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=7.3e-40 Score=427.22 Aligned_cols=347 Identities=20% Similarity=0.283 Sum_probs=254.0
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh-----cCCCceEEEEEccc
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-----SETGVMRAVYIAPL 1399 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-----~~~~~~~~v~IaP~ 1399 (2158)
.|+......+.. ||..|||+|.++++.++.+ +|++++||||||||++|++|++.++... ....++++|||+||
T Consensus 127 ~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PT 205 (518)
T PLN00206 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPT 205 (518)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCC
Confidence 466677777766 7999999999999999975 5699999999999999999999887532 11234599999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccc
Q 000114 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2158)
Q Consensus 1400 raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l 1476 (2158)
++||.|+++.++ .+....++++..+.|+..... +....++|+|+||+++..++.+. ...++++++||+||||++
T Consensus 206 reLa~Qi~~~~~-~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~--~~~l~~v~~lViDEad~m 282 (518)
T PLN00206 206 RELCVQVEDQAK-VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH--DIELDNVSVLVLDEVDCM 282 (518)
T ss_pred HHHHHHHHHHHH-HHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC--CccchheeEEEeecHHHH
Confidence 999999998887 666666777777777654332 23345699999999998887663 456899999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccc-cEEEEecccccchHH
Q 000114 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVP-LEIHIQGVDITNFEA 1554 (2158)
Q Consensus 1477 ~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~-l~~~i~~~~~~~~~~ 1554 (2158)
.+.+ ++ ..+..+...+ ++.|++++|||+++ .+.++.++..... .+......++.. +...........
T Consensus 283 l~~g---f~---~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~-~i~~~~~~~~~~~v~q~~~~~~~~~--- 351 (518)
T PLN00206 283 LERG---FR---DQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDII-LISIGNPNRPNKAVKQLAIWVETKQ--- 351 (518)
T ss_pred hhcc---hH---HHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCE-EEEeCCCCCCCcceeEEEEeccchh---
Confidence 8654 22 2233333333 36799999999987 4567777654432 223322222221 111111111111
Q ss_pred HHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1555 RMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1555 ~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
.. ...+..+........++||||+|+..|+.++..|.. ..+.
T Consensus 352 k~----~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~----------------------------------~~g~ 393 (518)
T PLN00206 352 KK----QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV----------------------------------VTGL 393 (518)
T ss_pred HH----HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh----------------------------------ccCc
Confidence 00 111222222212346899999999999888865521 1234
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
.+..+||+|+..+|..+++.|++|+++|||||++++||||+|++.+|| +++.|.++.+|+||+|||||.|
T Consensus 394 ~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI----------~~d~P~s~~~yihRiGRaGR~g 463 (518)
T PLN00206 394 KALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVI----------IFDMPNTIKEYIHQIGRASRMG 463 (518)
T ss_pred ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEE----------EeCCCCCHHHHHHhccccccCC
Confidence 588999999999999999999999999999999999999999999999 6777889999999999999987
Q ss_pred CCCceEEEEEecCChHHHHHHHh
Q 000114 1715 LDNSGKCVILCHAPRKEYYKKFL 1737 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~k~l 1737 (2158)
..|.|++|+...+...+..+.
T Consensus 464 --~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 464 --EKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred --CCeEEEEEEchhHHHHHHHHH
Confidence 689999999887665555443
No 39
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-40 Score=405.81 Aligned_cols=337 Identities=20% Similarity=0.278 Sum_probs=257.5
Q ss_pred hhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh----cCCCceEEEEEcccHHHH
Q 000114 1329 NPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA----SETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1329 ~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~----~~~~~~~~v~IaP~raLa 1403 (2158)
.+....+.. ||..|+|||.+.++.++.+.+ ++..|.||||||++|++|++.++... ..+++|++++++||||||
T Consensus 100 ~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA 178 (519)
T KOG0331|consen 100 EELMKALKEQGFEKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELA 178 (519)
T ss_pred HHHHHHHHhcCCCCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHH
Confidence 344555554 799999999999999999776 99999999999999999999999862 234457999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccC-CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEK-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
.|+.+.+. .|+..++++..+++|+.+.. .+.+++ .+|+|+||+++.+++.. ....++++.++|+||||.|++.+
T Consensus 179 ~QV~~~~~-~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~--g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 179 VQVQAEAR-EFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE--GSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHH-HHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc--CCccccceeEEEeccHHhhhccc
Confidence 99999999 78877788889999988764 344444 59999999999999887 56678999999999999999877
Q ss_pred CChHHHHHHHHHHHHhhcCC-CceEEEeccCCCC-hHHHHH-HhccCCCceEecCCC--CcccccEEEEecccccchHHH
Q 000114 1481 GPVLEVIVSRMRYIASQVEN-KIRIVALSTSLAN-AKDLGE-WIGATSHGLFNFPPG--VRPVPLEIHIQGVDITNFEAR 1555 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~-~~riV~lSATl~n-~~dl~~-wl~~~~~~i~~f~~~--~rpv~l~~~i~~~~~~~~~~~ 1555 (2158)
+-..++.|..+++. ..|.++.|||.|. .+.++. +++ ....+...... .....+...+..++ ...
T Consensus 256 ------Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~----~~~ 324 (519)
T KOG0331|consen 256 ------FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCD----ETA 324 (519)
T ss_pred ------cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcC----HHH
Confidence 66677777777744 4479999999986 455554 343 32211111000 00000111111111 000
Q ss_pred HHhcChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000114 1556 MQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2158)
Q Consensus 1556 ~~~~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2158)
... ....++... ...+++||||+|++.|..++..+.. ..
T Consensus 325 K~~----~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~-----------------------------------~~ 365 (519)
T KOG0331|consen 325 KLR----KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR-----------------------------------KG 365 (519)
T ss_pred HHH----HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh-----------------------------------cC
Confidence 111 111222222 3567899999999999999966622 23
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~ 1713 (2158)
+++..+||+.++.+|..+++.|++|+..|||||++++||+|+|++.+|| |++.|-++.+|+||+||+||.
T Consensus 366 ~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI----------nydfP~~vEdYVHRiGRTGRa 435 (519)
T KOG0331|consen 366 WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI----------NYDFPNNVEDYVHRIGRTGRA 435 (519)
T ss_pred cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE----------eCCCCCCHHHHHhhcCccccC
Confidence 5688999999999999999999999999999999999999999999999 788899999999999999998
Q ss_pred CCCCceEEEEEecCChHH
Q 000114 1714 LLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~~~~ 1731 (2158)
| ..|.++.|.+.....
T Consensus 436 ~--~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 436 G--KKGTAITFFTSDNAK 451 (519)
T ss_pred C--CCceEEEEEeHHHHH
Confidence 6 899999988876543
No 40
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.9e-39 Score=444.55 Aligned_cols=400 Identities=20% Similarity=0.285 Sum_probs=281.3
Q ss_pred EEccCCchhHHHHHHHHHHHHHhhc--------CCCceEEEEEcccHHHHHHHHHHHHHH----------hcC-CCCcEE
Q 000114 1362 VAAPTGSGKTICSEFAILRNHQKAS--------ETGVMRAVYIAPLEALAKERYRDWEIK----------FGQ-GLGMRV 1422 (2158)
Q Consensus 1362 i~ApTGSGKTl~a~l~il~~l~~~~--------~~~~~~~v~IaP~raLa~q~~~~~~~~----------f~~-~~g~~v 1422 (2158)
|+||||||||+||+||++..+.... ..+++++|||+|+|+|+.|+++.++.. ++. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999998887531 112469999999999999999998742 222 247899
Q ss_pred EEEcCCcchhhh--cc-cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHhhc
Q 000114 1423 VELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQV 1498 (2158)
Q Consensus 1423 ~~ltG~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~~~ 1498 (2158)
...+||++.+.+ .+ +.++|+|+|||+|..++.+ +.+..++++++|||||+|.+.+ .+|..++..++|+..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC---
Confidence 999999987653 33 3579999999999988654 2355789999999999999887 58999999999999874
Q ss_pred CCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchH------------HHHHhcChHHHHH
Q 000114 1499 ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE------------ARMQAMTKPTFTA 1566 (2158)
Q Consensus 1499 ~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~------------~~~~~~~k~~~~~ 1566 (2158)
+.+.|+|+||||++|.+++++||+......+...+..++.++.+.+...+..... .+...+.......
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 4578999999999999999999987533322335666777776555432221110 0011122222334
Q ss_pred HHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh---cccEEEecCCC
Q 000114 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL---RHGVGYLHEGL 1643 (2158)
Q Consensus 1567 i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l---~~gv~~~H~~l 1643 (2158)
+...+..++++|||||||+.|+.++..|.......... . ..............+....... ...+..|||+|
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsL 311 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR-S----PSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSV 311 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccc-c----ccccchhhhhhhccccchhccccccceeeeeccccC
Confidence 44444567899999999999999999986543210000 0 0000000000011111111111 12367999999
Q ss_pred CHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
++++|..+++.|++|++++||||+++++|||++++.+|| ++..|+++.+|+||+|||||. .+..+.+++
T Consensus 312 SkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVI----------q~gsP~sVas~LQRiGRAGR~-~gg~s~gli 380 (1490)
T PRK09751 312 SKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVI----------QVATPLSVASGLQRIGRAGHQ-VGGVSKGLF 380 (1490)
T ss_pred CHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEE----------EeCCCCCHHHHHHHhCCCCCC-CCCccEEEE
Confidence 999999999999999999999999999999999999999 567789999999999999997 356777776
Q ss_pred EecCChHHHH------HHHhh-CCCccccc--hhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhh
Q 000114 1724 LCHAPRKEYY------KKFLY-DAFPVESH--LHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRL 1783 (2158)
Q Consensus 1724 l~~~~~~~~~------~k~l~-~~~piES~--L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl 1783 (2158)
+..+ ..++. +.++. ..+++... -...|..|+.+.++.+.+ +..+..+.++.+|.|+.|
T Consensus 381 ~p~~-r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~-~~d~l~~~vrra~pf~~L 447 (1490)
T PRK09751 381 FPRT-RRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDAL-QVDEWYSRVRRAAPWKDL 447 (1490)
T ss_pred EeCc-HHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCC-CHHHHHHHhhccCCcccC
Confidence 5554 33332 23333 23333332 235678888888876544 467878888888877643
No 41
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.3e-39 Score=446.02 Aligned_cols=401 Identities=20% Similarity=0.260 Sum_probs=265.9
Q ss_pred EEccCCCchHHHHHHHHHHHHHhccCCC--CCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc------------cCCcEE
Q 000114 516 LCAPTGAGKTNVAVLTILQQLALNRNDD--GSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ------------MYDVKV 581 (2158)
Q Consensus 516 v~APTGsGKT~~a~l~il~~l~~~~~~~--~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~------------~~gi~v 581 (2158)
|+||||||||++|++|++..+....... +.-..++.++|||+|+|||+.|+.++++..+. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999887542110 00112457999999999999999999875221 247899
Q ss_pred EEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHHHhhc
Q 000114 582 RELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETT 657 (2158)
Q Consensus 582 ~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~ 657 (2158)
...+||++...+. ...++|+|||||+|+.+.... ....++++++|||||+|.+.+ .||..++.++.|+... .
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l---~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL---L 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh---C
Confidence 9999999877643 247899999999996654332 235789999999999999987 5999999999998764 3
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChh-------------HHHHHhhHHHH
Q 000114 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL-------------QRFQLMNDLCY 724 (2158)
Q Consensus 658 ~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~-------------~~~~~l~~~~~ 724 (2158)
+.+.|+|++|||++|.+++++|+....... ++..+..++.++...+. ....... .+...+...++
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~-Iv~~~~~r~~~l~v~vp-~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVT-VVNPPAMRHPQIRIVVP-VANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEE-EECCCCCcccceEEEEe-cCchhhccccccccccccchhhhhhhhHHHH
Confidence 457899999999999999999997642111 22233445555543221 1110000 00111111222
Q ss_pred HHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh---hccCCeEEe
Q 000114 725 EKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD---LLPYGFAIH 800 (2158)
Q Consensus 725 ~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~---ll~~gv~~h 800 (2158)
..+... ...+++|||||||+.|+.++..|.+....... ....... .........+..... .....+.+|
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ia~~H 307 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQ------RSPSIAV-DAAHFESTSGATSNRVQSSDVFIARSH 307 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhcc------ccccccc-hhhhhhhccccchhccccccceeeeec
Confidence 223322 23679999999999999999999875321000 0000000 000000001111111 112347899
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCcc
Q 000114 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2158)
Q Consensus 801 Hagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2158)
||+|++++|..+++.|++|.+++||||+++++|||+|++++||+ |+.|. |+.+|+||+|||||. .+..+
T Consensus 308 HGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~gsP~------sVas~LQRiGRAGR~-~gg~s 376 (1490)
T PRK09751 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VATPL------SVASGLQRIGRAGHQ-VGGVS 376 (1490)
T ss_pred cccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eCCCC------CHHHHHHHhCCCCCC-CCCcc
Confidence 99999999999999999999999999999999999999999999 55543 888999999999996 56677
Q ss_pred EEEEEcCCCc-HHH----HHHhhcCC-Ccc--cchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHH
Q 000114 881 EGIIITGHSE-LRY----YLSLMNQQ-LPI--ESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941 (2158)
Q Consensus 881 ~~iil~~~~~-~~~----y~~ll~~~-~pi--eS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~ 941 (2158)
.++++..+.. .-. ...++... .|+ ...-...|..|+.+.++.+. -+.++..+.++.+|.|
T Consensus 377 ~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~-~~~d~l~~~vrra~pf 444 (1490)
T PRK09751 377 KGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDA-LQVDEWYSRVRRAAPW 444 (1490)
T ss_pred EEEEEeCcHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCC-CCHHHHHHHhhccCCc
Confidence 8887666532 111 12233222 122 22233467778877777544 3456666655555443
No 42
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.3e-39 Score=420.29 Aligned_cols=342 Identities=18% Similarity=0.277 Sum_probs=258.3
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC----CCceEEEEEcccHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~----~~~~~~v~IaP~ra 1401 (2158)
|+....+.+.. ||..|+|+|.++++.++++. |++++||||||||++|++|++..+..... ...+++|||+||++
T Consensus 8 l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Ptre 86 (456)
T PRK10590 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGR-DLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86 (456)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHH
Confidence 55566677766 79999999999999999855 59999999999999999999999865321 12348999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
||.|+++.++ .+....++++..++|+.+.+.+ ....++|+|+||+++..+... ....++++++|||||||++.+
T Consensus 87 La~Qi~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~--~~~~l~~v~~lViDEah~ll~ 163 (456)
T PRK10590 87 LAAQIGENVR-DYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--NAVKLDQVEILVLDEADRMLD 163 (456)
T ss_pred HHHHHHHHHH-HHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc--CCcccccceEEEeecHHHHhc
Confidence 9999999998 4555568888889998776532 334669999999999887765 334688999999999999987
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHH
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~ 1557 (2158)
.. +...++.+...++...|++++|||+++ ..+++.++......+...........+...+...+... .
T Consensus 164 ~~------~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~---k-- 232 (456)
T PRK10590 164 MG------FIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR---K-- 232 (456)
T ss_pred cc------cHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH---H--
Confidence 54 344555555666778899999999987 46777776555433332222222222222222111110 0
Q ss_pred hcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1558 ~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
......+... ....++||||+++..|..++..|.. .+..+.
T Consensus 233 ---~~~l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~-----------------------------------~g~~~~ 273 (456)
T PRK10590 233 ---RELLSQMIGK-GNWQQVLVFTRTKHGANHLAEQLNK-----------------------------------DGIRSA 273 (456)
T ss_pred ---HHHHHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHH-----------------------------------CCCCEE
Confidence 1111222222 3456899999999999988866622 234588
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
.+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| |+..|.+..+|+||+|||||.| .
T Consensus 274 ~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI----------~~~~P~~~~~yvqR~GRaGR~g--~ 341 (456)
T PRK10590 274 AIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV----------NYELPNVPEDYVHRIGRTGRAA--A 341 (456)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE----------EeCCCCCHHHhhhhccccccCC--C
Confidence 999999999999999999999999999999999999999999999 6778889999999999999987 6
Q ss_pred ceEEEEEecCChHHHHH
Q 000114 1718 SGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~ 1734 (2158)
.|.|++++...+...++
T Consensus 342 ~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 342 TGEALSLVCVDEHKLLR 358 (456)
T ss_pred CeeEEEEecHHHHHHHH
Confidence 78888888776544443
No 43
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-40 Score=422.70 Aligned_cols=340 Identities=22% Similarity=0.346 Sum_probs=267.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++.+.+ .||..|+|||.+++|.++.+.+ ++++|+||||||++|.+|+++.+...... ....+|+++||
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~~------~~~~aLil~PT 108 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVER------KYVSALILAPT 108 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhccccc------CCCceEEECCC
Confidence 445555555 6999999999999999999955 99999999999999999999997742110 11119999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|+||.|+++.+..+.... ++++..++|+.+...+. ..+++|+|+||+++ |.+.+.. ..++.++++|+||||.
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~---l~l~~v~~lVlDEADr 185 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGK---LDLSGVETLVLDEADR 185 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCC---cchhhcCEEEeccHhh
Confidence 999999999999988887 79999999998876653 23599999999997 7777663 5788999999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecC--Cc--ccccceeEEEeecc
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN--SY--RPVPLSQQYIGIQV 709 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~--~~--rpv~l~~~~~~~~~ 709 (2158)
|++ ++.+.++.|+..+ +.+.|++++|||+|. .+..+.......+...... .. -+..+.+.++.+..
T Consensus 186 mLd~Gf~~~i~~I~~~~-------p~~~qtllfSAT~~~--~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 186 MLDMGFIDDIEKILKAL-------PPDRQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred hhcCCCHHHHHHHHHhC-------CcccEEEEEecCCCH--HHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 998 6888888877654 458999999999996 5777666554444322221 21 23455666665544
Q ss_pred CChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchh
Q 000114 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2158)
Q Consensus 710 ~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (2158)
.. .++..+. .+.......++||||+|+..+..++..|...++.
T Consensus 257 ~~--~k~~~L~-----~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~------------------------------ 299 (513)
T COG0513 257 EE--EKLELLL-----KLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFK------------------------------ 299 (513)
T ss_pred HH--HHHHHHH-----HHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCe------------------------------
Confidence 32 2333222 2333344568999999999999999999886643
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhc
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2158)
+...||+|++++|..+++.|++|..+|||||++++||+|+|++.+||| ||.|. +..+|+||+|
T Consensus 300 -------~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~p~------~~e~yvHRiG 362 (513)
T COG0513 300 -------VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDLPL------DPEDYVHRIG 362 (513)
T ss_pred -------EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE----ccCCC------CHHHheeccC
Confidence 455699999999999999999999999999999999999999999999 66554 6678999999
Q ss_pred ccCCCCCCCccEEEEEcCCC-cHHHHHH
Q 000114 870 RAGRPQYDSYGEGIIITGHS-ELRYYLS 896 (2158)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~-~~~~y~~ 896 (2158)
|+||.| ..|.++.++.+. +...+.+
T Consensus 363 RTgRaG--~~G~ai~fv~~~~e~~~l~~ 388 (513)
T COG0513 363 RTGRAG--RKGVAISFVTEEEEVKKLKR 388 (513)
T ss_pred ccccCC--CCCeEEEEeCcHHHHHHHHH
Confidence 999998 779999999875 5544443
No 44
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.9e-39 Score=418.58 Aligned_cols=342 Identities=23% Similarity=0.299 Sum_probs=257.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++.+...+ .||.+|+++|.++++.++.+. +++++||||+|||++|++|+++.+...... .....++||++|
T Consensus 7 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~-d~l~~apTGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~lil~P 81 (434)
T PRK11192 7 ELDESLLEALQDKGYTRPTAIQAEAIPPALDGR-DVLGSAPTGTGKTAAFLLPALQHLLDFPRR----KSGPPRILILTP 81 (434)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHhhcccc----CCCCceEEEECC
Confidence 3566666776 799999999999999999875 599999999999999999999998754321 113468999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|++||.|+++.+..+....++++..++|+.....+. ...++|+|+||+++ +.+.+.. ..++++++|||||||+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~---~~~~~v~~lViDEah~ 158 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN---FDCRAVETLILDEADR 158 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---cCcccCCEEEEECHHH
Confidence 999999999999998888899999999998765543 34679999999997 4444332 3467899999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEEecCCcccc-cceeEEEeeccC
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVK 710 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~ 710 (2158)
+.+ .++..++.+...+ ....|++++|||++. ..++..++...+. .+......+.. .+.+.+... .
T Consensus 159 ~l~~~~~~~~~~i~~~~-------~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~i~~~~~~~--~ 227 (434)
T PRK11192 159 MLDMGFAQDIETIAAET-------RWRKQTLLFSATLEGDAVQDFAERLLNDPV--EVEAEPSRRERKKIHQWYYRA--D 227 (434)
T ss_pred HhCCCcHHHHHHHHHhC-------ccccEEEEEEeecCHHHHHHHHHHHccCCE--EEEecCCcccccCceEEEEEe--C
Confidence 987 5777776665433 456789999999974 4455555543221 11222221111 122222211 1
Q ss_pred ChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 711 ~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
....+...+ ..+.......++||||+++..+..++..|...+
T Consensus 228 ~~~~k~~~l-----~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~--------------------------------- 269 (434)
T PRK11192 228 DLEHKTALL-----CHLLKQPEVTRSIVFVRTRERVHELAGWLRKAG--------------------------------- 269 (434)
T ss_pred CHHHHHHHH-----HHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC---------------------------------
Confidence 111222221 223333346799999999999999999987632
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcc
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2158)
..+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. |...|+||+||
T Consensus 270 ----~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d~p~------s~~~yiqr~GR 335 (434)
T PRK11192 270 ----INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FDMPR------SADTYLHRIGR 335 (434)
T ss_pred ----CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE----ECCCC------CHHHHhhcccc
Confidence 23677899999999999999999999999999999999999999999999 66654 77899999999
Q ss_pred cCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 871 AGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
|||.| ..|.++++++..+...+.
T Consensus 336 ~gR~g--~~g~ai~l~~~~d~~~~~ 358 (434)
T PRK11192 336 TGRAG--RKGTAISLVEAHDHLLLG 358 (434)
T ss_pred cccCC--CCceEEEEecHHHHHHHH
Confidence 99987 669999998876655443
No 45
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=7.4e-40 Score=385.40 Aligned_cols=345 Identities=21% Similarity=0.312 Sum_probs=271.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|.+....++ .||.++|++|+++++.++.+. ++++.|-||+|||++|++|+++.+.+.+.. ...+..+|+|+||
T Consensus 89 LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gk-Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~----~r~~~~vlIi~PT 163 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPVQQKTIPPLLEGK-DVLAAAKTGTGKTLAFLLPAIELLRKLKFK----PRNGTGVLIICPT 163 (543)
T ss_pred cCHHHHHHHHhcCccchhHHHHhhcCccCCCc-cceeeeccCCCceeeehhHHHHHHHhcccC----CCCCeeEEEeccc
Confidence 444445555 799999999999999999987 599999999999999999999998876543 2267789999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|+||.|++...++++... ++.|+.+.|+.+....+ ...++|+|+||+++ |++.+... ..+.+++++|+||||+
T Consensus 164 RELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlDEADr 241 (543)
T KOG0342|consen 164 RELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLDEADR 241 (543)
T ss_pred HHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEeecchh
Confidence 999999999999999877 99999999998876543 35899999999998 77766655 5677789999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccC-ceEEe-cCCcccc---cceeEEEeec
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK-GLFYF-DNSYRPV---PLSQQYIGIQ 708 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~-~~~~f-~~~~rpv---~l~~~~~~~~ 708 (2158)
+++ ++...++.|+.-+ +...|.+++|||.| ..|.+..+..+.. ++|.- ...-.+. .+.|-++..+
T Consensus 242 lLd~GF~~di~~Ii~~l-------pk~rqt~LFSAT~~--~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~ 312 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKIL-------PKQRQTLLFSATQP--SKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP 312 (543)
T ss_pred hhhcccHHHHHHHHHhc-------cccceeeEeeCCCc--HHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc
Confidence 999 7877888776644 57888999999998 4455544443332 23221 1111121 2344333332
Q ss_pred cCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcch
Q 000114 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2158)
Q Consensus 709 ~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 788 (2158)
.. .++. .++..+.++....++||||+|...+...|..|....+.
T Consensus 313 ~~---~~f~----ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlp----------------------------- 356 (543)
T KOG0342|consen 313 SD---SRFS----LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLP----------------------------- 356 (543)
T ss_pred cc---chHH----HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCc-----------------------------
Confidence 22 2222 34555556665689999999999999999988743322
Q ss_pred hhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhh
Q 000114 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2158)
Q Consensus 789 l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2158)
|...||++++..|..+...|++.+--|||||+++|||+|+|+|++||+ |++|+ .+.+|+||+
T Consensus 357 --------v~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~P~------d~~~YIHRv 418 (543)
T KOG0342|consen 357 --------VLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDPPS------DPEQYIHRV 418 (543)
T ss_pred --------hhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCCCC------CHHHHHHHh
Confidence 334499999999999999999999999999999999999999999999 77776 678999999
Q ss_pred cccCCCCCCCccEEEEEcCCCcHHHHHHhh
Q 000114 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2158)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 898 (2158)
||+||.| +.|+++++..+.|+.++..+-
T Consensus 419 GRTaR~g--k~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 419 GRTAREG--KEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ccccccC--CCceEEEEeChhHHHHHHHHh
Confidence 9999976 789999999999987766543
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=7.4e-39 Score=419.71 Aligned_cols=364 Identities=20% Similarity=0.252 Sum_probs=259.3
Q ss_pred cCcceEEecCCCCCCCCCCCCcccccCCC--ChhhHhhc-------------CCCCCCCHHHHHHHHHHHcCCCcEEEEc
Q 000114 454 NKGYEEIHVPAMKHKPLDPNEKLIKISEM--PEWAQPAF-------------KGMTQLNRVQSRVYKSALSSADNILLCA 518 (2158)
Q Consensus 454 ~~~~eei~vp~~~~~~~~~~~~l~~i~~l--p~~~~~~f-------------~g~~~l~~iQ~~~i~~~l~~~~nvlv~A 518 (2158)
.+.|-.-..|+...+-.+....+..|+.. +.|.+..| .|+..|+|+|.++|+.++.+.+ +|+++
T Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrD-VLVim 482 (1195)
T PLN03137 404 VDRYGISSGPVEREPYVPKFIDVTYTEGSNDKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYD-VFVLM 482 (1195)
T ss_pred hhhhcccCCCcccCccccccceeeeecCCCCccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCC-EEEEc
Confidence 34455555555443333333333344333 33553333 4899999999999999998865 99999
Q ss_pred cCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh----
Q 000114 519 PTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---- 594 (2158)
Q Consensus 519 PTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---- 594 (2158)
|||+|||+||++|++.. ...+|||+|+++|+.+++..+.. .|+++..+.|+.....+.
T Consensus 483 PTGSGKSLcYQLPAL~~--------------~GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr 544 (1195)
T PLN03137 483 PTGGGKSLTYQLPALIC--------------PGITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQ 544 (1195)
T ss_pred CCCccHHHHHHHHHHHc--------------CCcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHH
Confidence 99999999999999853 12699999999999988777655 488999999987755432
Q ss_pred -----hccccEEEcchhHH---HHHHhccCCCccccccceEEeeccccccc---CChhhHHHHHHHHHHHHhhccccccE
Q 000114 595 -----IEETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRL 663 (2158)
Q Consensus 595 -----~~~~~IiV~TPekl---d~l~r~~~~~~~l~~v~lIIiDEaH~l~d---~rg~~le~iv~r~~~~~~~~~~~~ri 663 (2158)
....+|+++|||++ +.+.+..........+.+|||||||++.+ .+.+.+..+ ..+ ....+.+++
T Consensus 545 ~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L-~~L----r~~fp~vPi 619 (1195)
T PLN03137 545 ELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGL-GIL----KQKFPNIPV 619 (1195)
T ss_pred HHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHH-HHH----HHhCCCCCe
Confidence 14679999999997 33444332222335589999999999875 245555432 111 123457889
Q ss_pred EEEccccCC--hHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEec
Q 000114 664 VGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (2158)
Q Consensus 664 v~lSATlpn--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~ 741 (2158)
++||||++. .+++...++.. . ...|..++....+...++ . +. ...... +...+.....+.+.||||+
T Consensus 620 lALTATAT~~V~eDI~~~L~l~--~-~~vfr~Sf~RpNL~y~Vv--~-k~-kk~le~----L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 620 LALTATATASVKEDVVQALGLV--N-CVVFRQSFNRPNLWYSVV--P-KT-KKCLED----IDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred EEEEecCCHHHHHHHHHHcCCC--C-cEEeecccCccceEEEEe--c-cc-hhHHHH----HHHHHHhcccCCCceeEeC
Confidence 999999874 35666666532 2 334444443333432222 1 11 111111 1222222223567999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCc
Q 000114 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821 (2158)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i 821 (2158)
||++|+.++..|...+ ..+++|||||++.+|..+++.|.+|++
T Consensus 689 SRke~E~LAe~L~~~G-------------------------------------ika~~YHAGLs~eeR~~vqe~F~~Gei 731 (1195)
T PLN03137 689 SRMDCEKVAERLQEFG-------------------------------------HKAAFYHGSMDPAQRAFVQKQWSKDEI 731 (1195)
T ss_pred chhHHHHHHHHHHHCC-------------------------------------CCeeeeeCCCCHHHHHHHHHHHhcCCC
Confidence 9999999999987654 236778999999999999999999999
Q ss_pred eEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcCC
Q 000114 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (2158)
Q Consensus 822 ~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (2158)
+|||||++++||||+|+|++||+ |+.|. |+.+|+||+|||||.| ..|.|+++++..+...+..++...
T Consensus 732 ~VLVATdAFGMGIDkPDVR~VIH----ydlPk------SiEsYyQriGRAGRDG--~~g~cILlys~~D~~~~~~lI~~~ 799 (1195)
T PLN03137 732 NIICATVAFGMGINKPDVRFVIH----HSLPK------SIEGYHQECGRAGRDG--QRSSCVLYYSYSDYIRVKHMISQG 799 (1195)
T ss_pred cEEEEechhhcCCCccCCcEEEE----cCCCC------CHHHHHhhhcccCCCC--CCceEEEEecHHHHHHHHHHHhcc
Confidence 99999999999999999999999 77776 8889999999999988 569999999988877777776543
No 47
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=7.7e-40 Score=384.78 Aligned_cols=342 Identities=18% Similarity=0.292 Sum_probs=273.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCC-CCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG-SFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~-~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
.||+.|+|||.+++|..++.+ ++|..|.||||||.+|++|++-.+..-+.... .-...++++++++|||+|++|+..+
T Consensus 263 ~~y~eptpIqR~aipl~lQ~r-D~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeE 341 (673)
T KOG0333|consen 263 PGYKEPTPIQRQAIPLGLQNR-DPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEE 341 (673)
T ss_pred cCCCCCchHHHhhccchhccC-CeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHH
Confidence 699999999999999777665 49999999999999999999998877653221 1234678999999999999999999
Q ss_pred HHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHH
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLE 644 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le 644 (2158)
-.+++..+|+++..+.|+.+...+. ..+++|+|+||+++ |++-++. ..++++.+||+|||+.+.| ++-+.+.
T Consensus 342 t~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~---lvl~qctyvvldeadrmiDmgfE~dv~ 418 (673)
T KOG0333|consen 342 TNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY---LVLNQCTYVVLDEADRMIDMGFEPDVQ 418 (673)
T ss_pred HHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH---HHhccCceEeccchhhhhcccccHHHH
Confidence 9999999999999999999988763 46899999999998 7887765 4678899999999999999 7888888
Q ss_pred HHHHHHHHHH------------------hhccccccEEEEccccCChHHHHHHHhccccCceEE-ecCCcccccc-eeEE
Q 000114 645 SIVARTVRQI------------------ETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVPL-SQQY 704 (2158)
Q Consensus 645 ~iv~r~~~~~------------------~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~-f~~~~rpv~l-~~~~ 704 (2158)
.+++.+...- .....-.+.+.||||+|. .+...++..+..++++ ....-+|.+. +|.+
T Consensus 419 ~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p--~verlar~ylr~pv~vtig~~gk~~~rveQ~v 496 (673)
T KOG0333|consen 419 KILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPP--AVERLARSYLRRPVVVTIGSAGKPTPRVEQKV 496 (673)
T ss_pred HHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCCh--HHHHHHHHHhhCCeEEEeccCCCCccchheEE
Confidence 8887653211 111122688999999995 3555555444445444 4445566654 4555
Q ss_pred EeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcc
Q 000114 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2158)
Q Consensus 705 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 784 (2158)
+.+......+++ .+ +++.....++|||+|+++.|..+|+.|...++.
T Consensus 497 ~m~~ed~k~kkL---~e-----il~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~------------------------- 543 (673)
T KOG0333|consen 497 EMVSEDEKRKKL---IE-----ILESNFDPPIIIFVNTKKGADALAKILEKAGYK------------------------- 543 (673)
T ss_pred EEecchHHHHHH---HH-----HHHhCCCCCEEEEEechhhHHHHHHHHhhccce-------------------------
Confidence 555554332222 21 233334679999999999999999999887654
Q ss_pred CcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHH
Q 000114 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 785 ~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
+..+|||-++++|+.++..|++|..+|||||+++++|||+|+|.+||| ||..+ |+.+|
T Consensus 544 ------------~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin----ydmak------sieDY 601 (673)
T KOG0333|consen 544 ------------VTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN----YDMAK------SIEDY 601 (673)
T ss_pred ------------EEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee----cchhh------hHHHH
Confidence 445699999999999999999999999999999999999999999999 88777 89999
Q ss_pred HHhhcccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
+||+||+||+| +.|.++.|++..+-..|.
T Consensus 602 tHRIGRTgRAG--k~GtaiSflt~~dt~v~y 630 (673)
T KOG0333|consen 602 THRIGRTGRAG--KSGTAISFLTPADTAVFY 630 (673)
T ss_pred HHHhccccccc--cCceeEEEeccchhHHHH
Confidence 99999999998 889999999998755443
No 48
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=403.60 Aligned_cols=399 Identities=27% Similarity=0.451 Sum_probs=309.4
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
++-++|++||-.+-. +++|+|+|+|.+|||++|+.||.-.-.. .. |+||.+|.+||.+|.+++|+..|+.
T Consensus 297 elD~FQk~Ai~~ler-g~SVFVAAHTSAGKTvVAEYAialaq~h---~T--R~iYTSPIKALSNQKfRDFk~tF~D---- 366 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLER-GDSVFVAAHTSAGKTVVAEYAIALAQKH---MT--RTIYTSPIKALSNQKFRDFKETFGD---- 366 (1248)
T ss_pred CccHHHHHHHHHHHc-CCeEEEEecCCCCcchHHHHHHHHHHhh---cc--ceEecchhhhhccchHHHHHHhccc----
Confidence 688999999998866 5669999999999999999998744433 33 9999999999999999999999985
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHhhcC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
|+.+|||.... ..+.++|+|.|.+-+++-+ +...++++.+||+||+|.+.+ +||.+||.++- .+|
T Consensus 367 -vgLlTGDvqin----PeAsCLIMTTEILRsMLYr--gadliRDvE~VIFDEVHYiND~eRGvVWEEViI-------MlP 432 (1248)
T KOG0947|consen 367 -VGLLTGDVQIN----PEASCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYINDVERGVVWEEVII-------MLP 432 (1248)
T ss_pred -cceeecceeeC----CCcceEeehHHHHHHHHhc--ccchhhccceEEEeeeeecccccccccceeeee-------ecc
Confidence 55899987755 5678999999999888765 566789999999999999998 79999998763 348
Q ss_pred CCceEEEeccCCCChHHHHHHhccCCCc-eEecCCCCcccccEEEEeccccc-------------chHHHHHhc------
Q 000114 1500 NKIRIVALSTSLANAKDLGEWIGATSHG-LFNFPPGVRPVPLEIHIQGVDIT-------------NFEARMQAM------ 1559 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~dl~~wl~~~~~~-i~~f~~~~rpv~l~~~i~~~~~~-------------~~~~~~~~~------ 1559 (2158)
..+++|+||||+||..++++|+|..+.. ++..+...||||++..+..-... .+.......
T Consensus 433 ~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~ 512 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKF 512 (1248)
T ss_pred ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccc
Confidence 8999999999999999999999987654 67777789999999776322100 000000000
Q ss_pred ------------------------------------Ch--HHHHHHHHhHh--cCCCEEEEecChHHHHHHHHHHHhhcc
Q 000114 1560 ------------------------------------TK--PTFTAIVQHAK--NEKPALVFVPSRKYVRLTAVDLMTYSS 1599 (2158)
Q Consensus 1560 ------------------------------------~k--~~~~~i~~~~~--~~~~~IVFv~sr~~~~~~a~~L~~~~~ 1599 (2158)
.+ +.+..+..++. ..-|++|||-|++.|+..|..|...-.
T Consensus 513 ~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 513 VDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCc
Confidence 00 23444444443 335899999999999999998865433
Q ss_pred cCCcccccccCCCcccchhhHhh----hh--H------HHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecC
Q 000114 1600 MDGDQKSAFLLWPAEEVEPFIDN----IQ--E------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS 1667 (2158)
Q Consensus 1600 ~~~~~~~~~l~~~~~~l~~~~~~----i~--d------~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~ 1667 (2158)
.++.. ..++.-++++ +. | ..+++.+..|++.||||+-+--+..|+.+|..|-++||+||-
T Consensus 593 ~~~~E--------KseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATE 664 (1248)
T KOG0947|consen 593 TDSKE--------KSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATE 664 (1248)
T ss_pred ccchh--------HHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehh
Confidence 32222 2233333332 22 1 346778889999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC--hHHHHHHHhh-CCCccc
Q 000114 1668 SMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP--RKEYYKKFLY-DAFPVE 1744 (2158)
Q Consensus 1668 ~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~--~~~~~~k~l~-~~~piE 1744 (2158)
++|+|||.|+.+||+.+.+.+||++. ..+.+.+|.||+|||||.|.|..|.++++|... ....+++++. .+.+++
T Consensus 665 TFAMGVNMPARtvVF~Sl~KhDG~ef--R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~ 742 (1248)
T KOG0947|consen 665 TFAMGVNMPARTVVFSSLRKHDGNEF--RELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLE 742 (1248)
T ss_pred hhhhhcCCCceeEEeeehhhccCcce--eecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhh
Confidence 99999999999999999999999874 456899999999999999999999999999886 4566777665 799999
Q ss_pred cchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhh
Q 000114 1745 SHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF 1778 (2158)
Q Consensus 1745 S~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~ 1778 (2158)
|++.-.....+|---+. .-.+-|.+..+|
T Consensus 743 SQFRlTY~MILnLLRve-----~lrvEdm~krSf 771 (1248)
T KOG0947|consen 743 SQFRLTYGMILNLLRVE-----ALRVEDMMKRSF 771 (1248)
T ss_pred hhhhhHHHHHHHHHHHH-----HHHHHHHHHHHh
Confidence 99854444444322211 133445666666
No 49
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.6e-39 Score=418.94 Aligned_cols=344 Identities=17% Similarity=0.211 Sum_probs=256.7
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc---CCCceEEEEEcccHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---~~~~~~~v~IaP~ra 1401 (2158)
.++....+.+.. ||..|+|+|.++++.++.+. ++|++||||||||++|++|++.++.... ...++.+|||+||++
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~-dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTre 214 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGR-DMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRE 214 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHH
Confidence 355667777776 79999999999999999865 5999999999999999999998876521 122458999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
||.|+.+.+. .|+...++++..+.|+..... .....++|+|+||+++..++.+. ...++++++|||||||++.+
T Consensus 215 La~Qi~~~~~-~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~--~~~l~~v~~lViDEAd~mld 291 (545)
T PTZ00110 215 LAEQIREQCN-KFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN--VTNLRRVTYLVLDEADRMLD 291 (545)
T ss_pred HHHHHHHHHH-HHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC--CCChhhCcEEEeehHHhhhh
Confidence 9999999988 677667888888888766432 23345699999999998887763 34688999999999999987
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCC-c-ccccEEEEecccccchHHH
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGV-R-PVPLEIHIQGVDITNFEAR 1555 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~-r-pv~l~~~i~~~~~~~~~~~ 1555 (2158)
.. +...++.+..++....|++++|||++. ...++.++-......+...... . ...+...+...... ..
T Consensus 292 ~g------f~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~---~k 362 (545)
T PTZ00110 292 MG------FEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEH---EK 362 (545)
T ss_pred cc------hHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEech---hH
Confidence 54 344555666666778999999999976 3556655543211111111110 0 01111111111110 01
Q ss_pred HHhcChHHHHHHHHhH-hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1556 MQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1556 ~~~~~k~~~~~i~~~~-~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
. ..+..++... ..+.++||||+|++.|+.++..|.. .+.
T Consensus 363 ~-----~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~-----------------------------------~g~ 402 (545)
T PTZ00110 363 R-----GKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRL-----------------------------------DGW 402 (545)
T ss_pred H-----HHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHH-----------------------------------cCC
Confidence 0 1111222222 2677999999999999999876631 234
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.++.+|+||+|||||.|
T Consensus 403 ~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI----------~~d~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 403 PALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVI----------NFDFPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred cEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEE----------EeCCCCCHHHHHHHhcccccCC
Confidence 578899999999999999999999999999999999999999999999 6778889999999999999987
Q ss_pred CCCceEEEEEecCChHHHHH
Q 000114 1715 LDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~ 1734 (2158)
..|.|+.|+...+.....
T Consensus 473 --~~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 473 --AKGASYTFLTPDKYRLAR 490 (545)
T ss_pred --CCceEEEEECcchHHHHH
Confidence 789999998887654443
No 50
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.8e-39 Score=416.40 Aligned_cols=338 Identities=19% Similarity=0.250 Sum_probs=256.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|.......+.. ||..|||+|.+|++.++++. |++++||||||||++|.+|++..+.... ..++++|++||++||.|
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~-dvi~~a~TGsGKT~a~~lpil~~l~~~~--~~~~~lil~PtreLa~Q 87 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGK-DVIAQAKTGSGKTAAFGLGLLQKLDVKR--FRVQALVLCPTRELADQ 87 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCcHHHHHHHHHHHHhhhcc--CCceEEEEeCCHHHHHH
Confidence 55566667766 79999999999999999865 5999999999999999999999986522 23489999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
+++.++.......++++..++|+.+...+ ....++|+|+||++|..++++ ....++++++||+||||++.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~--~~~~l~~l~~lViDEad~~l~~g-- 163 (460)
T PRK11776 88 VAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK--GTLDLDALNTLVLDEADRMLDMG-- 163 (460)
T ss_pred HHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc--CCccHHHCCEEEEECHHHHhCcC--
Confidence 99999843332347899999998776422 234569999999999988876 34468899999999999988764
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcCh
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k 1561 (2158)
+...+..+...++...|++++|||+++ ...++..+...+.. +..........+...+....... +.
T Consensus 164 ----~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~-i~~~~~~~~~~i~~~~~~~~~~~---k~----- 230 (460)
T PRK11776 164 ----FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVE-VKVESTHDLPAIEQRFYEVSPDE---RL----- 230 (460)
T ss_pred ----cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEE-EEECcCCCCCCeeEEEEEeCcHH---HH-----
Confidence 344455556666778999999999986 34455444333222 22222222222333332222111 11
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
.....+... ...+++||||+|++.|+.++..|.. .+..+..+||
T Consensus 231 ~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~-----------------------------------~~~~v~~~hg 274 (460)
T PRK11776 231 PALQRLLLH-HQPESCVVFCNTKKECQEVADALNA-----------------------------------QGFSALALHG 274 (460)
T ss_pred HHHHHHHHh-cCCCceEEEECCHHHHHHHHHHHHh-----------------------------------CCCcEEEEeC
Confidence 112222232 3457899999999999999977632 2456899999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
+|++.+|..+++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||.| ..|.|
T Consensus 275 ~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI----------~~d~p~~~~~yiqR~GRtGR~g--~~G~a 342 (460)
T PRK11776 275 DLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI----------NYELARDPEVHVHRIGRTGRAG--SKGLA 342 (460)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE----------EecCCCCHhHhhhhcccccCCC--CcceE
Confidence 99999999999999999999999999999999999999999 6778889999999999999987 67999
Q ss_pred EEEecCChHHH
Q 000114 1722 VILCHAPRKEY 1732 (2158)
Q Consensus 1722 iil~~~~~~~~ 1732 (2158)
+.++...+...
T Consensus 343 i~l~~~~e~~~ 353 (460)
T PRK11776 343 LSLVAPEEMQR 353 (460)
T ss_pred EEEEchhHHHH
Confidence 99988765444
No 51
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.1e-39 Score=413.37 Aligned_cols=341 Identities=20% Similarity=0.275 Sum_probs=249.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC-----CCceEEEEEccc
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-----TGVMRAVYIAPL 1399 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~-----~~~~~~v~IaP~ 1399 (2158)
.|+....+.+.. ||..|+|+|.+|++.++++. |++++||||||||++|++|++..+..... ..++++|||+||
T Consensus 14 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Pt 92 (423)
T PRK04837 14 ALHPQVVEALEKKGFHNCTPIQALALPLTLAGR-DVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPT 92 (423)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-cEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCc
Confidence 466667777776 79999999999999999865 59999999999999999999998865321 123589999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcc-cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccc
Q 000114 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2158)
Q Consensus 1400 raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l 1476 (2158)
++||.|+++.+. .+....|+++..++|+...+ ...+ ..++|+|+||+++..+++. ....+++++++|+||||++
T Consensus 93 reLa~Qi~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~v~~lViDEad~l 169 (423)
T PRK04837 93 RELAVQIHADAE-PLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--NHINLGAIQVVVLDEADRM 169 (423)
T ss_pred HHHHHHHHHHHH-HHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccccEEEEecHHHH
Confidence 999999999988 56656689999999876544 2223 3469999999999888765 3446889999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhhcC--CCceEEEeccCCCCh-HHHH-HHhccCCCceEecCCCCc-ccccEEEEecccccc
Q 000114 1477 GGQGGPVLEVIVSRMRYIASQVE--NKIRIVALSTSLANA-KDLG-EWIGATSHGLFNFPPGVR-PVPLEIHIQGVDITN 1551 (2158)
Q Consensus 1477 ~~~~g~~~e~~isrl~~i~~~~~--~~~riV~lSATl~n~-~dl~-~wl~~~~~~i~~f~~~~r-pv~l~~~i~~~~~~~ 1551 (2158)
.+.+ +...+..+...++ ...+.+++|||++.. ..+. .++... ..+...+... ...+...+.. ..
T Consensus 170 ~~~~------f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p--~~i~v~~~~~~~~~i~~~~~~---~~ 238 (423)
T PRK04837 170 FDLG------FIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNP--EYVEVEPEQKTGHRIKEELFY---PS 238 (423)
T ss_pred hhcc------cHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCC--EEEEEcCCCcCCCceeEEEEe---CC
Confidence 7654 3333444444444 245678999999763 2332 333321 1222222111 1111111110 01
Q ss_pred hHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHH
Q 000114 1552 FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT 1631 (2158)
Q Consensus 1552 ~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~ 1631 (2158)
..... ..+..+... ....++||||++++.|+.++..|..
T Consensus 239 ~~~k~-----~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~----------------------------------- 277 (423)
T PRK04837 239 NEEKM-----RLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAA----------------------------------- 277 (423)
T ss_pred HHHHH-----HHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHh-----------------------------------
Confidence 11111 111122222 3457899999999999988866632
Q ss_pred hcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCC
Q 000114 1632 LRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2158)
Q Consensus 1632 l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaG 1711 (2158)
.+..+.++||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| |++.|.+..+|+||+||||
T Consensus 278 ~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI----------~~d~P~s~~~yiqR~GR~g 347 (423)
T PRK04837 278 DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVF----------NYDLPDDCEDYVHRIGRTG 347 (423)
T ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEE----------EeCCCCchhheEecccccc
Confidence 245689999999999999999999999999999999999999999999999 6778889999999999999
Q ss_pred CCCCCCceEEEEEecCChHHHHH
Q 000114 1712 RPLLDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1712 R~g~d~~G~~iil~~~~~~~~~~ 1734 (2158)
|.| ..|.|+.|..+.+...+.
T Consensus 348 R~G--~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 348 RAG--ASGHSISLACEEYALNLP 368 (423)
T ss_pred CCC--CCeeEEEEeCHHHHHHHH
Confidence 997 789999998876544443
No 52
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-40 Score=384.49 Aligned_cols=358 Identities=20% Similarity=0.257 Sum_probs=282.0
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCC--ceEEEEEcccHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETG--VMRAVYIAPLEAL 1402 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~--~~~~v~IaP~raL 1402 (2158)
+|..|.++.+-. ||..|+|||.++||..+.+.| ++.||.||||||.+|.+|+|.++... |.+ ..|+++++|||+|
T Consensus 187 NLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYr-Pk~~~~TRVLVL~PTREL 264 (691)
T KOG0338|consen 187 NLSRPLLKACSTLGYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYR-PKKVAATRVLVLVPTREL 264 (691)
T ss_pred ccchHHHHHHHhcCCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcC-cccCcceeEEEEeccHHH
Confidence 456677887766 899999999999999888777 99999999999999999999998863 322 2489999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
+.|++...+ ++..+..+.|+.+.|+.+... .+-..+||+|+||+++.+++|+.. ...+.+|..+|+||||+++++
T Consensus 265 aiQv~sV~~-qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~-sf~ldsiEVLvlDEADRMLee 342 (691)
T KOG0338|consen 265 AIQVHSVTK-QLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP-SFNLDSIEVLVLDEADRMLEE 342 (691)
T ss_pred HHHHHHHHH-HHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC-CccccceeEEEechHHHHHHH
Confidence 999999888 677777899999999987653 244567999999999999998754 457999999999999999877
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHh
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~ 1558 (2158)
+ +-..|+.|....+++.|.+++|||+.. ..+++..--..+..+|.-.+...+..+...+....... .
T Consensus 343 g------FademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~r------e 410 (691)
T KOG0338|consen 343 G------FADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKR------E 410 (691)
T ss_pred H------HHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecccc------c
Confidence 6 888899998888999999999999976 56666544344444554333333322221111100000 0
Q ss_pred cChHH-HHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1559 MTKPT-FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1559 ~~k~~-~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
..++. +..+... .-...+||||.|+++|..+-. |--+++..++
T Consensus 411 ~dRea~l~~l~~r-tf~~~~ivFv~tKk~AHRl~I-----------------------------------llGLlgl~ag 454 (691)
T KOG0338|consen 411 GDREAMLASLITR-TFQDRTIVFVRTKKQAHRLRI-----------------------------------LLGLLGLKAG 454 (691)
T ss_pred cccHHHHHHHHHH-hcccceEEEEehHHHHHHHHH-----------------------------------HHHHhhchhh
Confidence 01111 1222222 235779999999999976653 3345677899
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
-+||.|++.+|-..++.|+++++.|||||++++||+|++.+.+|| |+..|.++..|+||+||+.|+| +
T Consensus 455 ElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI----------Ny~mP~t~e~Y~HRVGRTARAG--R 522 (691)
T KOG0338|consen 455 ELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI----------NYAMPKTIEHYLHRVGRTARAG--R 522 (691)
T ss_pred hhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE----------eccCchhHHHHHHHhhhhhhcc--c
Confidence 999999999999999999999999999999999999999999999 8899999999999999999998 8
Q ss_pred ceEEEEEecCChHHHHHHHhhCCCccccch
Q 000114 1718 SGKCVILCHAPRKEYYKKFLYDAFPVESHL 1747 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~k~l~~~~piES~L 1747 (2158)
.|.++.|+..++...++..+.......+.+
T Consensus 523 aGrsVtlvgE~dRkllK~iik~~~~a~~kl 552 (691)
T KOG0338|consen 523 AGRSVTLVGESDRKLLKEIIKSSTKAGSKL 552 (691)
T ss_pred CcceEEEeccccHHHHHHHHhhhhhcccch
Confidence 999999999998777777777655555555
No 53
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.3e-39 Score=415.41 Aligned_cols=344 Identities=19% Similarity=0.297 Sum_probs=252.7
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++.+..++ .||.+|+++|.++++.++.++ |+|++||||||||++|++|+++.+........ ......++|||+|
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~-dvi~~apTGSGKTlay~lpil~~l~~~~~~~~-~~~~~~~aLil~P 170 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGH-DAIGRAQTGTGKTAAFLISIINQLLQTPPPKE-RYMGEPRALIIAP 170 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHHhcCcccc-cccCCceEEEEeC
Confidence 4677777776 799999999999999988875 59999999999999999999999876432110 0112468999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh----hccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|++||.|+++.++.+.+..++.+..++|+.+...+. ...++|+|+||+++..+..++. ..++++++|||||+|.
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~--~~l~~l~~lViDEah~ 248 (475)
T PRK01297 171 TRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE--VHLDMVEVMVLDEADR 248 (475)
T ss_pred cHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC--cccccCceEEechHHH
Confidence 999999999999998888899999999987655432 2467999999999844444433 5688999999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEEecCC-cccccceeEEEeeccCC
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNS-YRPVPLSQQYIGIQVKK 711 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn-~~dv~~~l~~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~ 711 (2158)
+.+ .+.+.+..++..+ . .....|++++|||+++ ..+++..+...+ ..+.+... .....+.+++..+....
T Consensus 249 l~~~~~~~~l~~i~~~~----~-~~~~~q~i~~SAT~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQT----P-RKEERQTLLFSATFTDDVMNLAKQWTTDP--AIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred HHhcccHHHHHHHHHhC----C-CCCCceEEEEEeecCHHHHHHHHHhccCC--EEEEeccCcCCCCcccEEEEEecchh
Confidence 876 4544454443322 1 1235689999999873 223333222221 11222221 11122334444333221
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh
Q 000114 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2158)
Q Consensus 712 ~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (2158)
+... ++. +.......++||||++++.++.++..|...+
T Consensus 322 ---k~~~----l~~-ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~---------------------------------- 359 (475)
T PRK01297 322 ---KYKL----LYN-LVTQNPWERVMVFANRKDEVRRIEERLVKDG---------------------------------- 359 (475)
T ss_pred ---HHHH----HHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHHcC----------------------------------
Confidence 1222 222 2223335699999999999999998886533
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhccc
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2158)
..+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+.+. |+.+|+||+|||
T Consensus 360 ---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~~P~------s~~~y~Qr~GRa 426 (475)
T PRK01297 360 ---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN----FTLPE------DPDDYVHRIGRT 426 (475)
T ss_pred ---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE----eCCCC------CHHHHHHhhCcc
Confidence 23567799999999999999999999999999999999999999999999 66554 788999999999
Q ss_pred CCCCCCCccEEEEEcCCCcHH
Q 000114 872 GRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~ 892 (2158)
||.| ..|.++++.+.++..
T Consensus 427 GR~g--~~g~~i~~~~~~d~~ 445 (475)
T PRK01297 427 GRAG--ASGVSISFAGEDDAF 445 (475)
T ss_pred CCCC--CCceEEEEecHHHHH
Confidence 9988 569999999876543
No 54
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.3e-39 Score=421.60 Aligned_cols=336 Identities=21% Similarity=0.286 Sum_probs=252.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+.+++ .||.+|+|+|.++++.++.+. ++|++||||||||++|.+|+++.+.... ..+++||++||
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~-dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~~LIL~PT 83 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQILVLAPT 83 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCeEEEEeCc
Confidence 566666666 699999999999999998775 5999999999999999999999875431 34589999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
++||.|+++.+..+.+.. ++.+..++|+.+...+. ...++|+|+||+++ +.+.+.. ..++++++|||||||.
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~---l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT---LDLSKLSGLVLDEADE 160 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cchhhceEEEeccHHH
Confidence 999999999998876654 78999999987765432 34689999999998 6665543 4578899999999998
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCCh-HHHHHHHhccccCceEEecCCc-ccccceeEEEeeccCC
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVKK 711 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~-~dv~~~l~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~ 711 (2158)
+.+ .+...++.++.. .+...|++++|||+|+. ..+...+...+ . .+...... ....+.+.++.+...
T Consensus 161 ml~~gf~~di~~Il~~-------lp~~~q~llfSAT~p~~i~~i~~~~l~~~-~-~i~i~~~~~~~~~i~q~~~~v~~~- 230 (629)
T PRK11634 161 MLRMGFIEDVETIMAQ-------IPEGHQTALFSATMPEAIRRITRRFMKEP-Q-EVRIQSSVTTRPDISQSYWTVWGM- 230 (629)
T ss_pred HhhcccHHHHHHHHHh-------CCCCCeEEEEEccCChhHHHHHHHHcCCC-e-EEEccCccccCCceEEEEEEechh-
Confidence 876 565666655543 46678999999999852 22332222111 1 11111111 111233334333221
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh
Q 000114 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2158)
Q Consensus 712 ~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (2158)
.+...+. .++......++||||+|++.+..++..|...++
T Consensus 231 --~k~~~L~-----~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~--------------------------------- 270 (629)
T PRK11634 231 --RKNEALV-----RFLEAEDFDAAIIFVRTKNATLEVAEALERNGY--------------------------------- 270 (629)
T ss_pred --hHHHHHH-----HHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCC---------------------------------
Confidence 1222222 222333457899999999999999999876542
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhccc
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2158)
.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ ||.+. +..+|+||+|||
T Consensus 271 ----~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~P~------~~e~yvqRiGRt 336 (629)
T PRK11634 271 ----NSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN----YDIPM------DSESYVHRIGRT 336 (629)
T ss_pred ----CEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCCCC------CHHHHHHHhccc
Confidence 3566799999999999999999999999999999999999999999999 66554 677999999999
Q ss_pred CCCCCCCccEEEEEcCCCcHHHHH
Q 000114 872 GRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
||.| ..|.+++++...+...+.
T Consensus 337 GRaG--r~G~ai~~v~~~e~~~l~ 358 (629)
T PRK11634 337 GRAG--RAGRALLFVENRERRLLR 358 (629)
T ss_pred cCCC--CcceEEEEechHHHHHHH
Confidence 9988 679999999887654443
No 55
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.8e-40 Score=400.04 Aligned_cols=392 Identities=27% Similarity=0.396 Sum_probs=304.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
+|-|+|+.++.+ +..++.|||+|.|.+|||.+|..+|...+... -++||.+|.|||.+|.++++..-|
T Consensus 129 ~LDpFQ~~aI~C-idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-----------QRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKC-IDRGESVLVSAHTSAGKTVVAEYAIAMSLREK-----------QRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhh-hcCCceEEEEeecCCCcchHHHHHHHHHHHhc-----------CeEEeeChhhhhcchhHHHHHHHh
Confidence 789999999986 56778899999999999999999999998754 389999999999999999999887
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (2158)
+. |+..|||.+.+. .+.-+|+|.|-+..+.-+.. ..+..|.+||+||+|.+-| +||-+||.-+--
T Consensus 197 ~D----VGLMTGDVTInP----~ASCLVMTTEILRsMLYRGS--EvmrEVaWVIFDEIHYMRDkERGVVWEETIIl---- 262 (1041)
T KOG0948|consen 197 KD----VGLMTGDVTINP----DASCLVMTTEILRSMLYRGS--EVMREVAWVIFDEIHYMRDKERGVVWEETIIL---- 262 (1041)
T ss_pred cc----cceeecceeeCC----CCceeeeHHHHHHHHHhccc--hHhheeeeEEeeeehhccccccceeeeeeEEe----
Confidence 74 788999998876 46778899998854444433 5678899999999999999 799999865432
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEe---------eccCChh--HHH-HHhhH
Q 000114 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG---------IQVKKPL--QRF-QLMND 721 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~---------~~~~~~~--~~~-~~l~~ 721 (2158)
.+.++|.|+||||+||+..+|+|+..-...++.+....|||.||+..++. +.++... ..+ .+|..
T Consensus 263 ---lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 263 ---LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred ---ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 47899999999999999999999998878899999999999999876432 2222111 111 11110
Q ss_pred ------------------------------HHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhccccccccccc
Q 000114 722 ------------------------------LCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769 (2158)
Q Consensus 722 ------------------------------~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~ 769 (2158)
-+|..+.-.. ...|+|||+-|+++|+..|..+.+..++.+.-.
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk----- 414 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEK----- 414 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHH-----
Confidence 1222222222 246999999999999999998887654432110
Q ss_pred CchhHHHHHhhhhcc--------CcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEE
Q 000114 770 DSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (2158)
Q Consensus 770 ~~~~~~~l~~~~~~~--------~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v 841 (2158)
..-.++........ .-..+-.++.+|||+||+||-+--++.|+-+|.+|-++||+||.|++.|+|.||.+|
T Consensus 415 -~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTV 493 (1041)
T KOG0948|consen 415 -ELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTV 493 (1041)
T ss_pred -HHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeE
Confidence 11112222222211 122345678899999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc-HHHHHHhh-cCCCcccchhhHhhHHHHHHH
Q 000114 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFVSKLADQLNAE 919 (2158)
Q Consensus 842 VI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~-~~~y~~ll-~~~~pieS~l~~~l~d~lnae 919 (2158)
|+-....||+.. +.++|.-+|+||.|||||.|.|..|.+|++.+..- .+..+.++ .+.-|+.|.|+-.....||--
T Consensus 494 vFT~~rKfDG~~--fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLl 571 (1041)
T KOG0948|consen 494 VFTAVRKFDGKK--FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLL 571 (1041)
T ss_pred EEeeccccCCcc--eeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHH
Confidence 998888899886 45689999999999999999999999999998853 34445554 455689999988777777754
Q ss_pred HHhc
Q 000114 920 IVLG 923 (2158)
Q Consensus 920 I~~~ 923 (2158)
-+.|
T Consensus 572 RvEe 575 (1041)
T KOG0948|consen 572 RVEE 575 (1041)
T ss_pred HHcc
Confidence 4443
No 56
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-38 Score=417.98 Aligned_cols=337 Identities=21% Similarity=0.312 Sum_probs=249.9
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-----CCCceEEEEEcccH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-----ETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-----~~~~~~~v~IaP~r 1400 (2158)
|.....+.+.. ||..|+|+|.++|+.++++.+ ++++||||||||++|++|+++.+.... ....+++|||+||+
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~D-vi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTr 94 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPGGD-VAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTR 94 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcH
Confidence 55566666665 799999999999999998655 999999999999999999999886421 11135999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh--hcc-cCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--KLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1401 aLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~--~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+||.|+++.+. .|+...++++..++|+...+. +.+ ..++|||+||++|..++++.. ...++.+++|||||||++.
T Consensus 95 eLa~Qi~~~~~-~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 95 ELAIQIHKDAV-KFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHH-HHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999998 666667899999999877652 223 346999999999988876532 2357889999999999987
Q ss_pred CCCCChHHHHHHHHHHHHhhcCC--CceEEEeccCCCCh-HHH-HHHhccCCCceEecCCCCcccccEEEEecccccchH
Q 000114 1478 GQGGPVLEVIVSRMRYIASQVEN--KIRIVALSTSLANA-KDL-GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553 (2158)
Q Consensus 1478 ~~~g~~~e~~isrl~~i~~~~~~--~~riV~lSATl~n~-~dl-~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~ 1553 (2158)
+.. +...+..+...++. ..|++++|||+++. ..+ ..++... ..+...........+...+.. ....
T Consensus 173 d~g------f~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~---~~~~ 242 (572)
T PRK04537 173 DLG------FIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEP-EKLVVETETITAARVRQRIYF---PADE 242 (572)
T ss_pred hcc------hHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCC-cEEEeccccccccceeEEEEe---cCHH
Confidence 654 34444455544443 67999999999762 233 2333322 122211111111112211111 1111
Q ss_pred HHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000114 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2158)
Q Consensus 1554 ~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2158)
... ..+..+... ..+.++||||+|++.|+.++..|.. .+
T Consensus 243 ~k~-----~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~-----------------------------------~g 281 (572)
T PRK04537 243 EKQ-----TLLLGLLSR-SEGARTMVFVNTKAFVERVARTLER-----------------------------------HG 281 (572)
T ss_pred HHH-----HHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHH-----------------------------------cC
Confidence 111 111222222 4577899999999999999876632 23
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~ 1713 (2158)
..+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++.+|| |++.|.++.+|+||+|||||.
T Consensus 282 ~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VI----------nyd~P~s~~~yvqRiGRaGR~ 351 (572)
T PRK04537 282 YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVY----------NYDLPFDAEDYVHRIGRTARL 351 (572)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEE----------EcCCCCCHHHHhhhhcccccC
Confidence 4699999999999999999999999999999999999999999999999 777899999999999999998
Q ss_pred CCCCceEEEEEecCCh
Q 000114 1714 LLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~~ 1729 (2158)
| ..|.|++|+.+..
T Consensus 352 G--~~G~ai~~~~~~~ 365 (572)
T PRK04537 352 G--EEGDAISFACERY 365 (572)
T ss_pred C--CCceEEEEecHHH
Confidence 7 6789999887654
No 57
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=372.17 Aligned_cols=345 Identities=20% Similarity=0.304 Sum_probs=266.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|.+|+.+++ .||+.+||+|..+||..+.+.| |+|-||||||||++|++|++..+...... .....+-+|+|+||
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KD-VvveavTGSGKTlAFllP~le~i~rr~~~---~~~~~vgalIIsPT 88 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKD-VVVEAVTGSGKTLAFLLPMLEIIYRREAK---TPPGQVGALIISPT 88 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCc-eEEEcCCCCCchhhHHHHHHHHHHhhccC---CCccceeEEEecCc
Confidence 458888888 7999999999999998877766 99999999999999999999999543221 12235689999999
Q ss_pred HHHHHHHHHHHHhhccc-CCcEEEEEeCCCccCHhh----hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 560 KALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~-~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
|+||.|+.+....++.. .++++..++|+.+..... .++++|+|+||+++ |++.+.. ....+..+.++|+||||
T Consensus 89 RELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~-~~l~~rsLe~LVLDEAD 167 (567)
T KOG0345|consen 89 RELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREA-EKLSFRSLEILVLDEAD 167 (567)
T ss_pred HHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchh-hhccccccceEEecchH
Confidence 99999999998887766 578899999997766543 45889999999998 5555544 33446789999999999
Q ss_pred cccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecC----CcccccceeEEEeec
Q 000114 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN----SYRPVPLSQQYIGIQ 708 (2158)
Q Consensus 634 ~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~----~~rpv~l~~~~~~~~ 708 (2158)
+|+| ++...++.|++++ +...|.=++|||.. ..+....+..+.+++-+-.. +..|..+...|+.+.
T Consensus 168 rLldmgFe~~~n~ILs~L-------PKQRRTGLFSATq~--~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 168 RLLDMGFEASVNTILSFL-------PKQRRTGLFSATQT--QEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred hHhcccHHHHHHHHHHhc-------ccccccccccchhh--HHHHHHHHhhccCceeeeecccccccCchhhcceeeEec
Confidence 9999 7888888888876 55667789999975 55666555554444332221 124555666666554
Q ss_pred cCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcch
Q 000114 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2158)
Q Consensus 709 ~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 788 (2158)
.. .++..+.++ +.....+++|||.+|...++..+..+....
T Consensus 239 a~---eK~~~lv~~-----L~~~~~kK~iVFF~TCasVeYf~~~~~~~l------------------------------- 279 (567)
T KOG0345|consen 239 AD---EKLSQLVHL-----LNNNKDKKCIVFFPTCASVEYFGKLFSRLL------------------------------- 279 (567)
T ss_pred HH---HHHHHHHHH-----HhccccccEEEEecCcchHHHHHHHHHHHh-------------------------------
Confidence 33 233322222 222446799999999999988887776531
Q ss_pred hhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhh
Q 000114 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2158)
Q Consensus 789 l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2158)
.+..+...||.|.+..|..++..|++..-.||+||+++|||+|+|++++||+ ||||+ .+..|+||+
T Consensus 280 ----~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~DpP~------~~~~FvHR~ 345 (567)
T KOG0345|consen 280 ----KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDPPK------DPSSFVHRC 345 (567)
T ss_pred ----CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCCCC------ChhHHHhhc
Confidence 1233556699999999999999999988899999999999999999999999 77776 667899999
Q ss_pred cccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 869 GRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
||+||.| ..|.++++..+.+..|..
T Consensus 346 GRTaR~g--r~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 346 GRTARAG--REGNAIVFLNPREEAYVE 370 (567)
T ss_pred chhhhcc--CccceEEEecccHHHHHH
Confidence 9999988 789999999996655544
No 58
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-39 Score=378.39 Aligned_cols=370 Identities=21% Similarity=0.285 Sum_probs=271.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.++..||.+|+++||.+++++| ++|.|+||||||++|++|+++.+..... ..-+.+++-+|+|+|||+||.|+++.+
T Consensus 155 m~i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~--ki~Rs~G~~ALVivPTREL~~Q~y~~~ 231 (708)
T KOG0348|consen 155 MKISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEP--KIQRSDGPYALVIVPTRELALQIYETV 231 (708)
T ss_pred hccCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCc--cccccCCceEEEEechHHHHHHHHHHH
Confidence 5799999999999999999877 9999999999999999999999876532 223457889999999999999999999
Q ss_pred HhhcccCCc-EEEEEeCCCccCH---hhhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHH
Q 000114 571 SNRLQMYDV-KVRELSGDQTLTR---QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLE 644 (2158)
Q Consensus 571 ~~~~~~~gi-~v~~l~Gd~~~~~---~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le 644 (2158)
+++++++.. .-+.+.|+..... +..++.+|+|+||+++ |.|..... ..++++++||+||+|.|.+ +++..+.
T Consensus 232 qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~--i~~s~LRwlVlDEaDrlleLGfekdit 309 (708)
T KOG0348|consen 232 QKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS--IKFSRLRWLVLDEADRLLELGFEKDIT 309 (708)
T ss_pred HHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch--heeeeeeEEEecchhHHHhccchhhHH
Confidence 999987653 3366666654332 2357899999999997 77766543 5678899999999999999 7888888
Q ss_pred HHHHHHHHHHhh------ccccccEEEEccccCChHHHHHHHhccccCceEEe---------------------------
Q 000114 645 SIVARTVRQIET------TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF--------------------------- 691 (2158)
Q Consensus 645 ~iv~r~~~~~~~------~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f--------------------------- 691 (2158)
.|+..+-.+... .++..+-+++||||. +.|.+..+..+..+++.-
T Consensus 310 ~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLt--d~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l 387 (708)
T KOG0348|consen 310 QILKAVHSIQNAECKDPKLPHQLQNMLLSATLT--DGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKL 387 (708)
T ss_pred HHHHHHhhccchhcccccccHHHHhHhhhhhhH--HHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCccccccc
Confidence 888766332111 223467899999997 445555544443333322
Q ss_pred cCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCc
Q 000114 692 DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS 771 (2158)
Q Consensus 692 ~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 771 (2158)
+..--|-.|.+++..++.+ -++-.+..++...+. .....++|||+++...++.-+..|.........-
T Consensus 388 ~~~~iPeqL~qry~vVPpK---LRLV~Laa~L~~~~k-~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~-------- 455 (708)
T KOG0348|consen 388 DSFAIPEQLLQRYTVVPPK---LRLVALAALLLNKVK-FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG-------- 455 (708)
T ss_pred ccccCcHHhhhceEecCCc---hhHHHHHHHHHHHhh-hhhhceeEEEEechhHHHHHHHHHHhhhhccccc--------
Confidence 1111233445555554443 234444444444333 2235589999999999999998887654321100
Q ss_pred hhHHHHHhhhhccCcchhhh-hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccC
Q 000114 772 VSREILQSHTDMVKSNDLKD-LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN 850 (2158)
Q Consensus 772 ~~~~~l~~~~~~~~~~~l~~-ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd 850 (2158)
......+..+.. ++...+.-+||+|++++|..+++.|+...-.||.||++++||+|+|.|++||. ||
T Consensus 456 --------~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd 523 (708)
T KOG0348|consen 456 --------SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YD 523 (708)
T ss_pred --------ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE----eC
Confidence 000011111111 23344777899999999999999999998899999999999999999999999 88
Q ss_pred CCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcC
Q 000114 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (2158)
Q Consensus 851 ~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (2158)
+|. +..+|+||+||+.|.| ..|.+++|..+.|.+ |.+++..
T Consensus 524 ~P~------s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~~ 564 (708)
T KOG0348|consen 524 PPF------STADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLKK 564 (708)
T ss_pred CCC------CHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHHh
Confidence 775 8899999999999998 779999999999888 5444433
No 59
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.8e-39 Score=410.07 Aligned_cols=338 Identities=19% Similarity=0.305 Sum_probs=248.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|+++....+ .||..|+|+|.++++.++.+.+ ++++||||||||++|++|+++.+.... .+.++||++|+
T Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~apTGsGKT~~~~l~~l~~~~~~~--------~~~~~lil~Pt 105 (401)
T PTZ00424 35 LNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQAQSGTGKTATFVIAALQLIDYDL--------NACQALILAPT 105 (401)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHhcCCC--------CCceEEEECCC
Confidence 444444443 5899999999999999988765 899999999999999999998875321 34589999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
++|+.|+.+.+.......++.+..+.|+....... ...++|+|+||+++ +.+.+.. ..++++++|||||+|++
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH---LRVDDLKLFILDEADEM 182 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC---cccccccEEEEecHHHH
Confidence 99999999999988877788888889987654322 34579999999997 4444432 45788999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE--ecCCcccccceeEEEeeccCCh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY--FDNSYRPVPLSQQYIGIQVKKP 712 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~--f~~~~rpv~l~~~~~~~~~~~~ 712 (2158)
.+ .++..+..++ ...+..+|++++|||+|+ ++..+.......+... .........+.+.++.... .
T Consensus 183 ~~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 251 (401)
T PTZ00424 183 LSRGFKGQIYDVF-------KKLPPDVQVALFSATMPN--EILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEK--E 251 (401)
T ss_pred HhcchHHHHHHHH-------hhCCCCcEEEEEEecCCH--HHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecCh--H
Confidence 76 3443333332 234678999999999985 3333222211111111 1111112222233322211 1
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhh
Q 000114 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2158)
Q Consensus 713 ~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l 792 (2158)
......+. .+.......++||||+|++.+..++..|...+
T Consensus 252 ~~~~~~l~-----~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~----------------------------------- 291 (401)
T PTZ00424 252 EWKFDTLC-----DLYETLTITQAIIYCNTRRKVDYLTKKMHERD----------------------------------- 291 (401)
T ss_pred HHHHHHHH-----HHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC-----------------------------------
Confidence 11111111 22233346789999999999999988876532
Q ss_pred ccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
.++..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. |..+|+||+||||
T Consensus 292 --~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~~p~------s~~~y~qr~GRag 359 (401)
T PTZ00424 292 --FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN----YDLPA------SPENYIHRIGRSG 359 (401)
T ss_pred --CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE----ECCCC------CHHHEeecccccc
Confidence 35788999999999999999999999999999999999999999999999 66554 7889999999999
Q ss_pred CCCCCCccEEEEEcCCCcHHHHHH
Q 000114 873 RPQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
|.| ..|.|++++++.+...+..
T Consensus 360 R~g--~~G~~i~l~~~~~~~~~~~ 381 (401)
T PTZ00424 360 RFG--RKGVAINFVTPDDIEQLKE 381 (401)
T ss_pred cCC--CCceEEEEEcHHHHHHHHH
Confidence 987 6799999999888776654
No 60
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.7e-38 Score=406.89 Aligned_cols=344 Identities=17% Similarity=0.264 Sum_probs=251.4
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.+.+..++.++. ||..|+|+|.++++.++++.+ ++++||||||||++|++|+++.+...... .++||++|+++|+.
T Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~apTGsGKT~~~~l~~l~~~~~~~~~--~~~lil~Pt~~L~~ 110 (401)
T PTZ00424 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQAQSGTGKTATFVIAALQLIDYDLNA--CQALILAPTRELAQ 110 (401)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHhcCCCCC--ceEEEECCCHHHHH
Confidence 466677888887 799999999999999998655 99999999999999999999888653233 38999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh--hh-cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LK-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+.+.+. .++...+..+..+.|+.... .. ....++|+|+||+++..++++ ....+++++++||||+|++.+..
T Consensus 111 Q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~i~lvViDEah~~~~~~- 186 (401)
T PTZ00424 111 QIQKVVL-ALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK--RHLRVDDLKLFILDEADEMLSRG- 186 (401)
T ss_pred HHHHHHH-HHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh--CCcccccccEEEEecHHHHHhcc-
Confidence 9999888 55555677888888876543 22 233469999999999877765 23468899999999999987543
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcC
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
+...+..+..+++...|++++|||+++. .++...+...+..+...........+........... ..
T Consensus 187 -----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----- 254 (401)
T PTZ00424 187 -----FKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEE--WK----- 254 (401)
T ss_pred -----hHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHH--HH-----
Confidence 1122333444557789999999999873 2333222222211211111111111122211111100 00
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
......+... ....++||||+|++.|+.++..|.. .+.++..+|
T Consensus 255 ~~~l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~-----------------------------------~~~~~~~~h 298 (401)
T PTZ00424 255 FDTLCDLYET-LTITQAIIYCNTRRKVDYLTKKMHE-----------------------------------RDFTVSCMH 298 (401)
T ss_pred HHHHHHHHHh-cCCCeEEEEecCcHHHHHHHHHHHH-----------------------------------CCCcEEEEe
Confidence 0111222222 3456899999999999888865521 245689999
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
|+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|.
T Consensus 299 ~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI----------~~~~p~s~~~y~qr~GRagR~g--~~G~ 366 (401)
T PTZ00424 299 GDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI----------NYDLPASPENYIHRIGRSGRFG--RKGV 366 (401)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE----------EECCCCCHHHEeecccccccCC--CCce
Confidence 999999999999999999999999999999999999999999 5667889999999999999986 6899
Q ss_pred EEEEecCChHHHHHHH
Q 000114 1721 CVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1721 ~iil~~~~~~~~~~k~ 1736 (2158)
|++++.+.+.++++++
T Consensus 367 ~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 367 AINFVTPDDIEQLKEI 382 (401)
T ss_pred EEEEEcHHHHHHHHHH
Confidence 9999988877766654
No 61
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-39 Score=363.70 Aligned_cols=343 Identities=19% Similarity=0.310 Sum_probs=269.7
Q ss_pred cCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE
Q 000114 479 ISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556 (2158)
Q Consensus 479 i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~i 556 (2158)
...|.+|+-+.+ .|++++||+|..|||.+++|.+ +|-||.||||||.+|.+||++.+..++ .+.-++++
T Consensus 11 ~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrd-cig~AkTGsGKT~AFaLPil~rLsedP--------~giFalvl 81 (442)
T KOG0340|consen 11 ILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRD-CIGCAKTGSGKTAAFALPILNRLSEDP--------YGIFALVL 81 (442)
T ss_pred hcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccc-cccccccCCCcchhhhHHHHHhhccCC--------CcceEEEe
Confidence 345678888777 6899999999999999999977 999999999999999999999998865 34579999
Q ss_pred cccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCC-CccccccceEEeec
Q 000114 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDE 631 (2158)
Q Consensus 557 aP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~-~~~l~~v~lIIiDE 631 (2158)
.|||+|+-|+.+.|....+.+++++..+.|+++.-.+. ...+|++|+|||++ +.+...... ...+++++++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999999999999999999999998754433 46899999999998 555444222 34578899999999
Q ss_pred cccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCccc----ccceeEEEe
Q 000114 632 IHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRP----VPLSQQYIG 706 (2158)
Q Consensus 632 aH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rp----v~l~~~~~~ 706 (2158)
|+.+.+ .+...++.+.. ..+...|.++||||+. +.+....++....+..++....-. -.|.+.++.
T Consensus 162 ADrvL~~~f~d~L~~i~e-------~lP~~RQtLlfSATit--d~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~ 232 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEE-------CLPKPRQTLLFSATIT--DTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYIL 232 (442)
T ss_pred hhhhhccchhhHHhhhhc-------cCCCccceEEEEeehh--hHHHHhhcCCcccccceEEeccCCCCchhhhhhheee
Confidence 999887 46666665544 2456679999999997 356666666544433444333332 245566665
Q ss_pred eccCChhHHHHHhhHHHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcc
Q 000114 707 IQVKKPLQRFQLMNDLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2158)
Q Consensus 707 ~~~~~~~~~~~~l~~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 784 (2158)
+..... +..++..+.... ..+.++|||++..+|+.++..|......
T Consensus 233 ~~~~vk-------daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r------------------------- 280 (442)
T KOG0340|consen 233 VSIDVK-------DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVR------------------------- 280 (442)
T ss_pred cchhhh-------HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhcee-------------------------
Confidence 444321 112233332222 3678999999999999999998875433
Q ss_pred CcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHH
Q 000114 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 785 ~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
++..|+.|++.+|...+.+|+++.++|||||++++||+|+|.|.+|||++.|-| +-+|
T Consensus 281 ------------~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~----------P~~y 338 (442)
T KOG0340|consen 281 ------------VVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRD----------PKDY 338 (442)
T ss_pred ------------eeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCC----------HHHH
Confidence 455699999999999999999999999999999999999999999999555554 4579
Q ss_pred HHhhcccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
+||+||+.|+| ..|.++.|+++.+.+.+.
T Consensus 339 iHRvGRtARAG--R~G~aiSivt~rDv~l~~ 367 (442)
T KOG0340|consen 339 IHRVGRTARAG--RKGMAISIVTQRDVELLQ 367 (442)
T ss_pred HHhhcchhccc--CCcceEEEechhhHHHHH
Confidence 99999999998 779999999987766554
No 62
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-39 Score=378.84 Aligned_cols=345 Identities=20% Similarity=0.288 Sum_probs=277.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.+|..++.+|+++|+.++.|.+ +|..|-||||||++|+.|+|+.+...++. ..++.-+|+|+|||+||.|++..+
T Consensus 87 ~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs----~~DGlGalIISPTRELA~QtFevL 161 (758)
T KOG0343|consen 87 AKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWS----PTDGLGALIISPTRELALQTFEVL 161 (758)
T ss_pred cCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCC----CCCCceeEEecchHHHHHHHHHHH
Confidence 5799999999999999999987 99999999999999999999999876543 346788999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~i 646 (2158)
.+..+..+++.+.+.|+...... .+.+.+|+||||+++ ..+-.... ....++.++|+|||++++| ++..+++.|
T Consensus 162 ~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLDEADR~LDMGFk~tL~~I 239 (758)
T KOG0343|consen 162 NKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLDEADRMLDMGFKKTLNAI 239 (758)
T ss_pred HHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCC--CCCCcceEEEeccHHHHHHHhHHHHHHHH
Confidence 99999999999999999876543 467899999999996 44443332 4567789999999999999 788899988
Q ss_pred HHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec----CCcccccceeEEEeeccCChhHHHHHhhHH
Q 000114 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD----NSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (2158)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~----~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~ 722 (2158)
+..+ +...|.+++|||-. ..++...+..+..+.++-. ..-.|..|.+.|+.+....... .
T Consensus 240 i~~l-------P~~RQTLLFSATqt--~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~-------~ 303 (758)
T KOG0343|consen 240 IENL-------PKKRQTLLFSATQT--KSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID-------M 303 (758)
T ss_pred HHhC-------Chhheeeeeecccc--hhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH-------H
Confidence 8755 77889999999965 4566666654444444322 2345778888888776654322 3
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecC
Q 000114 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2158)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHa 802 (2158)
++..+..+. ..++|||++|.+++..++..++..-.. ..+..+||
T Consensus 304 L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg-----------------------------------~~l~~L~G 347 (758)
T KOG0343|consen 304 LWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPG-----------------------------------IPLLALHG 347 (758)
T ss_pred HHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCC-----------------------------------Cceeeecc
Confidence 344444433 678999999999999999998875322 12345699
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEE
Q 000114 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2158)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2158)
+|++..|..|...|-....-||+||++++||+|+|+|++||. +|.|. .+.+|+||+||+.| ++..|++
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ----~DCPe------dv~tYIHRvGRtAR--~~~~G~s 415 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ----VDCPE------DVDTYIHRVGRTAR--YKERGES 415 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE----ecCch------hHHHHHHHhhhhhc--ccCCCce
Confidence 999999999999999999999999999999999999999999 45443 56689999999999 5588999
Q ss_pred EEEcCCCcHHHHHHhhcCC-Ccccc
Q 000114 883 IIITGHSELRYYLSLMNQQ-LPIES 906 (2158)
Q Consensus 883 iil~~~~~~~~y~~ll~~~-~pieS 906 (2158)
+++..+++.+.+...+... +|++.
T Consensus 416 ll~L~psEeE~~l~~Lq~k~I~i~~ 440 (758)
T KOG0343|consen 416 LLMLTPSEEEAMLKKLQKKKIPIKE 440 (758)
T ss_pred EEEEcchhHHHHHHHHHHcCCCHHh
Confidence 9999999977776655443 66654
No 63
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-38 Score=409.88 Aligned_cols=340 Identities=21% Similarity=0.305 Sum_probs=261.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~ 1404 (2158)
|....++.+.. ||..|+|||.++++.++.+.+ +++.|+||||||++|.+|+++.+... ..... .+++++|||+||.
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~-~aLil~PTRELA~ 113 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVERKYV-SALILAPTRELAV 113 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhcccccCCC-ceEEECCCHHHHH
Confidence 55667777776 899999999999999999755 99999999999999999999998742 22221 2999999999999
Q ss_pred HHHHHHHHHhcCCC-CcEEEEEcCCcchhh--hccc-CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1405 ERYRDWEIKFGQGL-GMRVVELTGETAMDL--KLLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~-g~~v~~ltG~~~~~~--~~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
|+++.+. .++... ++++..++|+.+... ..+. .++|||+||+++.+++.+- ...++++.++|+||||.+++.+
T Consensus 114 Qi~~~~~-~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~--~l~l~~v~~lVlDEADrmLd~G 190 (513)
T COG0513 114 QIAEELR-KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG--KLDLSGVETLVLDEADRMLDMG 190 (513)
T ss_pred HHHHHHH-HHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC--CcchhhcCEEEeccHhhhhcCC
Confidence 9999999 677776 789999999987652 3333 3799999999999998873 5678999999999999999885
Q ss_pred CChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhc---cCCCceEecCCCC--cccccEEEEecccccchHHH
Q 000114 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG---ATSHGLFNFPPGV--RPVPLEIHIQGVDITNFEAR 1555 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~---~~~~~i~~f~~~~--rpv~l~~~i~~~~~~~~~~~ 1555 (2158)
+...+..|...++.+.|++++|||+++. +..|.. ..+..+....... .+..+...+....... .+
T Consensus 191 ------f~~~i~~I~~~~p~~~qtllfSAT~~~~--i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~--~k 260 (513)
T COG0513 191 ------FIDDIEKILKALPPDRQTLLFSATMPDD--IRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE--EK 260 (513)
T ss_pred ------CHHHHHHHHHhCCcccEEEEEecCCCHH--HHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH--HH
Confidence 6777777777888899999999999872 333322 2222122111111 1222233222222111 11
Q ss_pred HHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhccc
Q 000114 1556 MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHG 1635 (2158)
Q Consensus 1556 ~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~g 1635 (2158)
. .....+... ....++||||+|++.|..++..|.. .++.
T Consensus 261 ~-----~~L~~ll~~-~~~~~~IVF~~tk~~~~~l~~~l~~-----------------------------------~g~~ 299 (513)
T COG0513 261 L-----ELLLKLLKD-EDEGRVIVFVRTKRLVEELAESLRK-----------------------------------RGFK 299 (513)
T ss_pred H-----HHHHHHHhc-CCCCeEEEEeCcHHHHHHHHHHHHH-----------------------------------CCCe
Confidence 1 111222222 2344699999999999998866632 3456
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1636 v~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
+..+||+|++++|..+++.|++|..+|||||++++||||+|.+.+|| |++.|.+..+|+||+||+||.|
T Consensus 300 ~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vi----------nyD~p~~~e~yvHRiGRTgRaG- 368 (513)
T COG0513 300 VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVI----------NYDLPLDPEDYVHRIGRTGRAG- 368 (513)
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeE----------EccCCCCHHHheeccCccccCC-
Confidence 99999999999999999999999999999999999999999999999 8888999999999999999998
Q ss_pred CCceEEEEEecCC-hHHHHH
Q 000114 1716 DNSGKCVILCHAP-RKEYYK 1734 (2158)
Q Consensus 1716 d~~G~~iil~~~~-~~~~~~ 1734 (2158)
..|.++.|+.+. +...+.
T Consensus 369 -~~G~ai~fv~~~~e~~~l~ 387 (513)
T COG0513 369 -RKGVAISFVTEEEEVKKLK 387 (513)
T ss_pred -CCCeEEEEeCcHHHHHHHH
Confidence 899999999874 433333
No 64
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-40 Score=362.88 Aligned_cols=332 Identities=21% Similarity=0.301 Sum_probs=271.4
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
++.+..+| .||+.|.|+|.++||.++.|.+ +|+-|..|+|||.+|.+|+|..+.... ...++++++|||+
T Consensus 94 r~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~~--------~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 94 RELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPKK--------NVIQAIILVPTRE 164 (459)
T ss_pred HHHHHHHHHhccCCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCccc--------cceeEEEEeecch
Confidence 45566677 8999999999999999998866 999999999999999999999886542 4568999999999
Q ss_pred HHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc
Q 000114 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 562 La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
||-|+.+.+.++.+.+|++|...+|++++.+.. ....+++|+||+++ |...+.- ..+++..++|+|||+.|++
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV---a~ls~c~~lV~DEADKlLs 241 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV---ADLSDCVILVMDEADKLLS 241 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccc---ccchhceEEEechhhhhhc
Confidence 999999999999999999999999999987754 34779999999997 5554443 4678899999999999988
Q ss_pred -CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc-eEEecCCcccccceeEEEeeccCChhHH
Q 000114 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFDNSYRPVPLSQQYIGIQVKKPLQR 715 (2158)
Q Consensus 638 -~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~-~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 715 (2158)
++++.++.++..+ ++..|++++|||.|. .|..|....+.++ ..+.-....+..+.+.|-.+.+. .+
T Consensus 242 ~~F~~~~e~li~~l-------P~~rQillySATFP~--tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~---qK 309 (459)
T KOG0326|consen 242 VDFQPIVEKLISFL-------PKERQILLYSATFPL--TVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEER---QK 309 (459)
T ss_pred hhhhhHHHHHHHhC-------CccceeeEEecccch--hHHHHHHHhccCcceeehhhhhhhcchhhheeeechh---hh
Confidence 7999999887754 788999999999994 5777776554433 33344444555555555544443 23
Q ss_pred HHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccC
Q 000114 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (2158)
Q Consensus 716 ~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (2158)
... ...+...+.-.|.||||||.+.++-+|+.+.+.|+++
T Consensus 310 vhC-----LntLfskLqINQsIIFCNS~~rVELLAkKITelGysc----------------------------------- 349 (459)
T KOG0326|consen 310 VHC-----LNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSC----------------------------------- 349 (459)
T ss_pred hhh-----HHHHHHHhcccceEEEeccchHhHHHHHHHHhccchh-----------------------------------
Confidence 333 3334444557899999999999999999999877654
Q ss_pred CeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCC
Q 000114 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2158)
Q Consensus 796 gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2158)
.+.|+.|.+++|+.|+..|++|.++.||||+.+.||||+++++|||| ||.++ +...|+||+||+||-|
T Consensus 350 --yyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN----FDfpk------~aEtYLHRIGRsGRFG 417 (459)
T KOG0326|consen 350 --YYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDFPK------NAETYLHRIGRSGRFG 417 (459)
T ss_pred --hHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe----cCCCC------CHHHHHHHccCCccCC
Confidence 34499999999999999999999999999999999999999999999 77666 6778999999999955
Q ss_pred CCCccEEEEEcCCCcHH
Q 000114 876 YDSYGEGIIITGHSELR 892 (2158)
Q Consensus 876 ~d~~G~~iil~~~~~~~ 892 (2158)
..|.+|-+.+-++..
T Consensus 418 --hlGlAInLityedrf 432 (459)
T KOG0326|consen 418 --HLGLAINLITYEDRF 432 (459)
T ss_pred --CcceEEEEEehhhhh
Confidence 789999887776543
No 65
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.5e-38 Score=404.94 Aligned_cols=342 Identities=19% Similarity=0.273 Sum_probs=252.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc--CCCceEEEEEcccHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~--~~~~~~~v~IaP~raLa 1403 (2158)
|.....+.+.. ||..|+++|.++++.++++. +++++||||||||++|++|+++++.... ..+.++++|++||++||
T Consensus 8 l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~-d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa 86 (434)
T PRK11192 8 LDESLLEALQDKGYTRPTAIQAEAIPPALDGR-DVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELA 86 (434)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHH
Confidence 33444555544 79999999999999999865 5999999999999999999999886531 12235899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
.|+++.+. .+....++++..++|+...... ....++|+|+||+++..++.. ....++++++||+||||++.+.+
T Consensus 87 ~Q~~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--~~~~~~~v~~lViDEah~~l~~~ 163 (434)
T PRK11192 87 MQVADQAR-ELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--ENFDCRAVETLILDEADRMLDMG 163 (434)
T ss_pred HHHHHHHH-HHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--CCcCcccCCEEEEECHHHHhCCC
Confidence 99999998 5666678999999998765432 234569999999999887765 23357889999999999998754
Q ss_pred CChHHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCccc-ccEEEEecccccchHHHHH
Q 000114 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPV-PLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv-~l~~~i~~~~~~~~~~~~~ 1557 (2158)
+...+..+...++...|++++|||++. ..++..++...+..+ ...+..+.. .+...+...+ .....
T Consensus 164 ------~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~i~~~~~~~~--~~~~k-- 232 (434)
T PRK11192 164 ------FAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEV-EAEPSRRERKKIHQWYYRAD--DLEHK-- 232 (434)
T ss_pred ------cHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEE-EecCCcccccCceEEEEEeC--CHHHH--
Confidence 222233333444567899999999974 567777776544322 222222111 1111111111 11111
Q ss_pred hcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1558 ~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
...+..+... ...+++||||+++..|..++..|.. .+..+.
T Consensus 233 ---~~~l~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~-----------------------------------~~~~~~ 273 (434)
T PRK11192 233 ---TALLCHLLKQ-PEVTRSIVFVRTRERVHELAGWLRK-----------------------------------AGINCC 273 (434)
T ss_pred ---HHHHHHHHhc-CCCCeEEEEeCChHHHHHHHHHHHh-----------------------------------CCCCEE
Confidence 1112222222 3467899999999999999876632 234589
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
++||+|+..+|..+++.|++|+++|||||+++++|||+|++.+|| |++.|.+...|+||+|||||.| .
T Consensus 274 ~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI----------~~d~p~s~~~yiqr~GR~gR~g--~ 341 (434)
T PRK11192 274 YLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI----------NFDMPRSADTYLHRIGRTGRAG--R 341 (434)
T ss_pred EecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE----------EECCCCCHHHHhhcccccccCC--C
Confidence 999999999999999999999999999999999999999999999 6778889999999999999987 6
Q ss_pred ceEEEEEecCChHHHHH
Q 000114 1718 SGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~ 1734 (2158)
.|.|++++...+...+.
T Consensus 342 ~g~ai~l~~~~d~~~~~ 358 (434)
T PRK11192 342 KGTAISLVEAHDHLLLG 358 (434)
T ss_pred CceEEEEecHHHHHHHH
Confidence 78888888765544433
No 66
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.8e-38 Score=411.89 Aligned_cols=342 Identities=18% Similarity=0.246 Sum_probs=253.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|..+.++.+.. ||.+|+|+|.++++.++.+. ++|+.||||||||++|.+|++..+.... ..+++||++||++||.|
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~-dvl~~ApTGsGKT~af~lpll~~l~~~~--~~~~~LIL~PTreLa~Q 89 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLHNLDPEL--KAPQILVLAPTRELAVQ 89 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHHHHHHHHHHHHhhhcc--CCCeEEEEeCcHHHHHH
Confidence 55666777766 89999999999999999865 5999999999999999999998886532 23489999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
+++.+........++++..++|+.+.+.. ....++|||+||+++..++++ ....++++++||+||||.+++..
T Consensus 90 v~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r--~~l~l~~l~~lVlDEAd~ml~~g-- 165 (629)
T PRK11634 90 VAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR--GTLDLSKLSGLVLDEADEMLRMG-- 165 (629)
T ss_pred HHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcchhhceEEEeccHHHHhhcc--
Confidence 99998854443357899999888765422 223569999999999887765 34468899999999999887654
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcCh
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k 1561 (2158)
+...+..+...++...|++++|||+++. ..+...+...+..+...........+...+..... ....
T Consensus 166 ----f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~---~~k~----- 233 (629)
T PRK11634 166 ----FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG---MRKN----- 233 (629)
T ss_pred ----cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech---hhHH-----
Confidence 3444555556667889999999999873 34444333332222111111111111111111100 0010
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
..+..++.. ....++||||+|+..|..++..|.. .++.+..+||
T Consensus 234 ~~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~~-----------------------------------~g~~~~~lhg 277 (629)
T PRK11634 234 EALVRFLEA-EDFDAAIIFVRTKNATLEVAEALER-----------------------------------NGYNSAALNG 277 (629)
T ss_pred HHHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHHh-----------------------------------CCCCEEEeeC
Confidence 111222222 3457899999999999999876632 2456889999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+|||||.| ..|.|
T Consensus 278 d~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI----------~~d~P~~~e~yvqRiGRtGRaG--r~G~a 345 (629)
T PRK11634 278 DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV----------NYDIPMDSESYVHRIGRTGRAG--RAGRA 345 (629)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEE----------EeCCCCCHHHHHHHhccccCCC--CcceE
Confidence 99999999999999999999999999999999999999999 6778889999999999999987 78999
Q ss_pred EEEecCChHHHHHH
Q 000114 1722 VILCHAPRKEYYKK 1735 (2158)
Q Consensus 1722 iil~~~~~~~~~~k 1735 (2158)
++++.+.+...++.
T Consensus 346 i~~v~~~e~~~l~~ 359 (629)
T PRK11634 346 LLFVENRERRLLRN 359 (629)
T ss_pred EEEechHHHHHHHH
Confidence 99998766544443
No 67
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.1e-38 Score=406.11 Aligned_cols=336 Identities=21% Similarity=0.281 Sum_probs=248.9
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCC-----CceEEEEEcccH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-----GVMRAVYIAPLE 1400 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~-----~~~~~v~IaP~r 1400 (2158)
|+......+.. ||..|+|+|.++++.+++++ |++++||||||||++|++|++..+.+.... +.+++|||+||+
T Consensus 94 l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~-dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~Ptr 172 (475)
T PRK01297 94 LAPELMHAIHDLGFPYCTPIQAQVLGYTLAGH-DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTR 172 (475)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcH
Confidence 55566666666 79999999999999999865 599999999999999999999988763211 135899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccc
Q 000114 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2158)
Q Consensus 1401 aLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l 1476 (2158)
+|+.|+++.++ .+....++++..++|+...+ .+.+ ..++|+|+||+++..+..+| ...++++++|||||+|.+
T Consensus 173 eLa~Q~~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~--~~~l~~l~~lViDEah~l 249 (475)
T PRK01297 173 ELVVQIAKDAA-ALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG--EVHLDMVEVMVLDEADRM 249 (475)
T ss_pred HHHHHHHHHHH-HhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CcccccCceEEechHHHH
Confidence 99999999998 56556688999999976543 2222 34699999999998887765 346889999999999998
Q ss_pred cCCCCChHHHHHHHHHHHHhhcC--CCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCC-cccccEEEEecccccch
Q 000114 1477 GGQGGPVLEVIVSRMRYIASQVE--NKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGV-RPVPLEIHIQGVDITNF 1552 (2158)
Q Consensus 1477 ~~~~g~~~e~~isrl~~i~~~~~--~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~-rpv~l~~~i~~~~~~~~ 1552 (2158)
.+.. +..+++.+..+.+ ...|++++|||+++ ...++.++..... .+...+.. ....+..++........
T Consensus 250 ~~~~------~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 250 LDMG------FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPA-IVEIEPENVASDTVEQHVYAVAGSDK 322 (475)
T ss_pred Hhcc------cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCE-EEEeccCcCCCCcccEEEEEecchhH
Confidence 7654 4445555555543 25699999999865 4444444333221 22222211 11112222222111110
Q ss_pred HHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000114 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2158)
Q Consensus 1553 ~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2158)
. .....+... ....++||||++++.|+.++..|.. .
T Consensus 323 ---~-----~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~-----------------------------------~ 358 (475)
T PRK01297 323 ---Y-----KLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLVK-----------------------------------D 358 (475)
T ss_pred ---H-----HHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHH-----------------------------------c
Confidence 0 111112222 3456899999999999988865521 2
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
+..+..+||+++.++|..+++.|++|+++|||||+++++|||+|++.+|| ++..|.++.+|+||+|||||
T Consensus 359 ~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI----------~~~~P~s~~~y~Qr~GRaGR 428 (475)
T PRK01297 359 GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVI----------NFTLPEDPDDYVHRIGRTGR 428 (475)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEE----------EeCCCCCHHHHHHhhCccCC
Confidence 34588999999999999999999999999999999999999999999999 67788899999999999999
Q ss_pred CCCCCceEEEEEecCCh
Q 000114 1713 PLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~~ 1729 (2158)
.| ..|.++++..+.+
T Consensus 429 ~g--~~g~~i~~~~~~d 443 (475)
T PRK01297 429 AG--ASGVSISFAGEDD 443 (475)
T ss_pred CC--CCceEEEEecHHH
Confidence 87 6788888887664
No 68
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.1e-38 Score=370.77 Aligned_cols=350 Identities=18% Similarity=0.196 Sum_probs=268.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc--CCCceEEEEEcccHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~--~~~~~~~v~IaP~raLa 1403 (2158)
|....+.++.. ||..+|++|..+++.++.+.+ +++.|.||||||++|++|+++.+.+.. +..+..+++|+|||+||
T Consensus 89 LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkD-vl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA 167 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKD-VLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELA 167 (543)
T ss_pred cCHHHHHHHHhcCccchhHHHHhhcCccCCCcc-ceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHH
Confidence 33444566665 899999999999999999775 999999999999999999999988753 23346899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
.|++.+.++.+....++.|+.+.|+.... .+....++|+|+||+++.+++.+... ...++++++|+||||++++.+
T Consensus 168 ~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-f~~r~~k~lvlDEADrlLd~G 246 (543)
T KOG0342|consen 168 MQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-FLFRNLKCLVLDEADRLLDIG 246 (543)
T ss_pred HHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc-chhhccceeEeecchhhhhcc
Confidence 99999999776655588999999988764 33444669999999999999988654 456778999999999999877
Q ss_pred CChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhc
Q 000114 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~ 1559 (2158)
+-..|..|...++...|..++|||.+. .++++.-.-......++......+...+..-+++-......++
T Consensus 247 ------F~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f--- 317 (543)
T KOG0342|consen 247 ------FEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF--- 317 (543)
T ss_pred ------cHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH---
Confidence 666677777778899999999999987 5677664433323333433333332222222222221111111
Q ss_pred ChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEe
Q 000114 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (2158)
Q Consensus 1560 ~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~ 1639 (2158)
-..+..+.++ ....++||||+|...+...+..|. .+...|.-+
T Consensus 318 -~ll~~~LKk~-~~~~KiiVF~sT~~~vk~~~~lL~-----------------------------------~~dlpv~ei 360 (543)
T KOG0342|consen 318 -SLLYTFLKKN-IKRYKIIVFFSTCMSVKFHAELLN-----------------------------------YIDLPVLEI 360 (543)
T ss_pred -HHHHHHHHHh-cCCceEEEEechhhHHHHHHHHHh-----------------------------------hcCCchhhh
Confidence 1233444444 334889999999999988885542 244568889
Q ss_pred cCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCce
Q 000114 1640 HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSG 1719 (2158)
Q Consensus 1640 H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G 1719 (2158)
||++++..|..+...|++.+.-|||||+++|||+|+|++.+|| .++.|-...+|+||+||+||.| +.|
T Consensus 361 Hgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~Vv----------Q~~~P~d~~~YIHRvGRTaR~g--k~G 428 (543)
T KOG0342|consen 361 HGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVV----------QYDPPSDPEQYIHRVGRTAREG--KEG 428 (543)
T ss_pred hcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEE----------EeCCCCCHHHHHHHhccccccC--CCc
Confidence 9999999999999999999999999999999999999999999 3455667999999999999976 899
Q ss_pred EEEEEecCChHHHHHHH
Q 000114 1720 KCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1720 ~~iil~~~~~~~~~~k~ 1736 (2158)
.++++..+.+..|+..+
T Consensus 429 ~alL~l~p~El~Flr~L 445 (543)
T KOG0342|consen 429 KALLLLAPWELGFLRYL 445 (543)
T ss_pred eEEEEeChhHHHHHHHH
Confidence 99999888776555433
No 69
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-39 Score=349.31 Aligned_cols=335 Identities=20% Similarity=0.330 Sum_probs=261.3
Q ss_pred hhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000114 485 WAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2158)
Q Consensus 485 ~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa 563 (2158)
.++.+| -||++|..+|+.|++.++.+++ +++.|..|+|||.+|-+.+++.+.-.. ...++++++|||+|+
T Consensus 38 lLrgiY~yGfekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~~--------r~tQ~lilsPTRELa 108 (400)
T KOG0328|consen 38 LLRGIYAYGFEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDISV--------RETQALILSPTRELA 108 (400)
T ss_pred HHHHHHHhccCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeeccccc--------ceeeEEEecChHHHH
Confidence 355566 6999999999999999999876 999999999999999988888765432 346899999999999
Q ss_pred HHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-C
Q 000114 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 564 ~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
.|+.+.+..+..++++.+..+.|+.+..... ..+.+++.+||++. |++.|+. .....++++|+||++.+++ .
T Consensus 109 ~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~---L~tr~vkmlVLDEaDemL~kg 185 (400)
T KOG0328|consen 109 VQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS---LRTRAVKMLVLDEADEMLNKG 185 (400)
T ss_pred HHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc---ccccceeEEEeccHHHHHHhh
Confidence 9999999999999999999999998865432 24789999999996 7777766 3567899999999998877 5
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec-CCccccc-ceeEEEeeccCChhHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-NSYRPVP-LSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~-~~~rpv~-l~~~~~~~~~~~~~~~~ 716 (2158)
++..+-.+.. ..++..|++++|||+| .++.+-.......++.... ...-+.. +.+.++.+. +...++
T Consensus 186 fk~Qiydiyr-------~lp~~~Qvv~~SATlp--~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve--~EewKf 254 (400)
T KOG0328|consen 186 FKEQIYDIYR-------YLPPGAQVVLVSATLP--HEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE--KEEWKF 254 (400)
T ss_pred HHHHHHHHHH-------hCCCCceEEEEeccCc--HHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec--hhhhhH
Confidence 6655554433 4588999999999999 5555544433333322221 1112222 444444433 334455
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
..+.++ |+ .+.-.|++|||||++.+.++.+.+++..+ .
T Consensus 255 dtLcdL-Yd----~LtItQavIFcnTk~kVdwLtekm~~~nf-------------------------------------t 292 (400)
T KOG0328|consen 255 DTLCDL-YD----TLTITQAVIFCNTKRKVDWLTEKMREANF-------------------------------------T 292 (400)
T ss_pred hHHHHH-hh----hhehheEEEEecccchhhHHHHHHHhhCc-------------------------------------e
Confidence 555442 33 33467999999999999998888877542 3
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
|...||.|++++|..+...|++|+-+||+||++.|||+|+|.+.+||| ||.|. ....|+||+||+||-|
T Consensus 293 VssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDLP~------nre~YIHRIGRSGRFG- 361 (400)
T KOG0328|consen 293 VSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDLPN------NRELYIHRIGRSGRFG- 361 (400)
T ss_pred eeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe----cCCCc------cHHHHhhhhccccccC-
Confidence 555699999999999999999999999999999999999999999999 55544 3467999999999954
Q ss_pred CCccEEEEEcCCCcHHHHHH
Q 000114 877 DSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 877 d~~G~~iil~~~~~~~~y~~ 896 (2158)
..|.++-++..++...|.+
T Consensus 362 -RkGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 362 -RKGVAINFVKSDDLRILRD 380 (400)
T ss_pred -CcceEEEEecHHHHHHHHH
Confidence 8899999999998877664
No 70
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=390.44 Aligned_cols=650 Identities=20% Similarity=0.301 Sum_probs=437.3
Q ss_pred CCCCCCHHHHHHHHH--HhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1338 GFKHFNPIQTQVFTV--LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~--l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
|...+..+|.+|+.. ++ .+.|.|.++||+.|||+++++-+++..... .. .++.+.|..+.+.+....+. .|.
T Consensus 220 gi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~--rr--~~llilp~vsiv~Ek~~~l~-~~~ 293 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCR--RR--NVLLILPYVSIVQEKISALS-PFS 293 (1008)
T ss_pred hHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHH--hh--ceeEecceeehhHHHHhhhh-hhc
Confidence 577889999999854 55 688999999999999999999999887762 33 68999999999999888887 566
Q ss_pred CCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHH
Q 000114 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYI 1494 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i 1494 (2158)
..+|+.|..+.|..... +..+.-++.|||.|+-..+..+.-....+..+++|||||.|++++ .+|..+|.++..+.+.
T Consensus 294 ~~~G~~ve~y~g~~~p~-~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 294 IDLGFPVEEYAGRFPPE-KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred cccCCcchhhcccCCCC-CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 66799998888765543 334556899999999988887766666788899999999999998 5799999999999887
Q ss_pred HhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHh---cC-----------
Q 000114 1495 ASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA---MT----------- 1560 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~---~~----------- 1560 (2158)
... ...|+||||||++|..++..|+.+.. +...+||+|+..++..-....-..++.. ..
T Consensus 373 ~~~--~~~~iIGMSATi~N~~lL~~~L~A~~-----y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~d 445 (1008)
T KOG0950|consen 373 NLE--TSVQIIGMSATIPNNSLLQDWLDAFV-----YTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDED 445 (1008)
T ss_pred ccc--cceeEeeeecccCChHHHHHHhhhhh-----eecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCC
Confidence 643 34889999999999999999999553 5677899999877643222211112111 11
Q ss_pred -hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccC-CCcccchhhH---hhhhHHHHHHHhccc
Q 000114 1561 -KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL-WPAEEVEPFI---DNIQEEMLKATLRHG 1635 (2158)
Q Consensus 1561 -k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~-~~~~~l~~~~---~~i~d~~L~~~l~~g 1635 (2158)
........+.+.++.++||||++|+.|+.+|..++........... ++. .......... ...-|..++..+.+|
T Consensus 446 pD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~-~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~G 524 (1008)
T KOG0950|consen 446 PDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEK-RLGLWELLSISNLLRRIPGILDPVLAKTIPYG 524 (1008)
T ss_pred CcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhh-hhhHHHHHHHHhHhhcCCcccchHHheecccc
Confidence 0111122233345667999999999999999777654443221111 110 0000011111 112345688899999
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1636 v~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
++|||+|++.++|+.|+..|+.|.+.|++||+++++|+|+|+.+|||.. +++.+ ...+..+|.||+|||||.|.
T Consensus 525 vAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira-P~~g~-----~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA-PYVGR-----EFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred ceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC-Ccccc-----chhhhhhHHhhhhhhhhccc
Confidence 9999999999999999999999999999999999999999999999943 22222 23468899999999999999
Q ss_pred CCceEEEEEecCChHHHHHHHhhCCC-ccccchhhH----HHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCc
Q 000114 1716 DNSGKCVILCHAPRKEYYKKFLYDAF-PVESHLHHF----LHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYY 1790 (2158)
Q Consensus 1716 d~~G~~iil~~~~~~~~~~k~l~~~~-piES~L~~~----l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y 1790 (2158)
|..|.++++|.+.++..+..++..+. |+.|+|... +...+..-|+.+..++.+|...+...|+|+.. .-|.+-
T Consensus 599 dT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~q--~~~~~~ 676 (1008)
T KOG0950|consen 599 DTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSAQ--EKPENV 676 (1008)
T ss_pred ccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhcc--cchhhh
Confidence 99999999999998887778888654 677887321 22344556677777899999999999998753 122221
Q ss_pred cCC-CC-C-cccHHHHHH-HHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCC---HHH
Q 000114 1791 NLQ-GV-S-HRHLSDHLS-ELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTR---MKG 1863 (2158)
Q Consensus 1791 ~~~-~~-~-~~~~~~~l~-~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~---~~~ 1863 (2158)
..+ +. + ...+.++.+ .++++ +.....-+. .....+|++|+.+=.-.+++.-+-.++..|..... +..
T Consensus 677 ~~~le~~s~ql~~~~~~~d~~l~~---d~i~~~~~~---~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle~ 750 (1008)
T KOG0950|consen 677 REQLEMESDQLVINDFKSDQLLEK---DFIYKKQIE---NLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLES 750 (1008)
T ss_pred hhcccchhhhhccchhhHHHHHHH---HHHHhHHHH---hhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhcccccc
Confidence 110 00 0 011122221 12211 111111111 11122888888776666776655554443332211 111
Q ss_pred HHHHHhcCcccc---C---------C--CCCcchHHHHHHHh-------hcCccccCCCCC-CCh---HHHHHHHHHHHh
Q 000114 1864 LLEVLASASEYA---Q---------L--PIRPGEEEVVRRLI-------HHQRFSFENPKF-TDP---HVKANALLQAHF 1918 (2158)
Q Consensus 1864 lL~ils~a~Ef~---~---------i--~vR~~E~~~l~~L~-------~~~p~~~~~~~~-~~~---~~K~~lLLqAhl 1918 (2158)
-+++|---.=|. + + .+...++...+.+- +.+.-.. .+.. +-+ ..=+.+.||..+
T Consensus 751 ~lh~lylvtP~~~~~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gqs-~~~~~~~~~~~r~y~~l~L~~li 829 (1008)
T KOG0950|consen 751 SLHLLYLVTPYLEVMNDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQS-VRNLQNVQKRKRLYVALALQKLI 829 (1008)
T ss_pred ccceeeeecchHhhcccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhccc-cccccchhHHHHHHHHHHHHHHH
Confidence 111111000010 0 0 00111211111110 0000000 0111 112 122556688888
Q ss_pred cCCCCC---CCc---hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHH
Q 000114 1919 SRQQVG---GNL---KLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKR 1992 (2158)
Q Consensus 1919 sR~~lp---~~l---~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~ 1992 (2158)
+..+++ ..| +.=+...+.++.....+..-.|.+.+|..-..-.-++.+.+.-|.-.+..||.-+|++...+++.
T Consensus 830 ~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl~~g~~~eL~~Lmrv~~~~~~RAr~ 909 (1008)
T KOG0950|consen 830 NESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRLSFGGHAELIPLMRVPDVKAERARQ 909 (1008)
T ss_pred hhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHHhccchhhhhhhhcCchhHHHHHHH
Confidence 887775 233 55667788889999988888899999974333344677788888888899999999999999999
Q ss_pred HHhCCCCCccCHHHHhcCCHHHHHHHhC
Q 000114 1993 CQENPGKSIETVFDLVEMEDDERRELLQ 2020 (2158)
Q Consensus 1993 l~~~~~~~i~tv~dl~~~~~~~r~~ll~ 2020 (2158)
+...| ++|+.+++...+.+..+-|.
T Consensus 910 lf~Ag---f~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 910 LFKAG---FTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred HHHhh---ccchHHHhcCChHHHHHHhh
Confidence 99999 99999999999888765553
No 71
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=363.87 Aligned_cols=348 Identities=19% Similarity=0.260 Sum_probs=261.7
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc---CCCceEEEEEcccHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---~~~~~~~v~IaP~raL 1402 (2158)
|.....+.+-. ||..+||+|..+++.++.+.| |++-||||||||++|++|+++.+.+.. +.+.+.+|||+|||+|
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KD-VvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTREL 91 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKD-VVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTREL 91 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCc-eEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHH
Confidence 34455555554 799999999999999998666 999999999999999999999994432 2223579999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhc--ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMD--LKL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
+.|+.+.......++..+++..++|+.+.. .+. -+.++|+|+||+++.+++++-.....++++.++|+||||.+++
T Consensus 92 a~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 92 ARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 999999988544554678899999987654 222 2356899999999999998855555678999999999999998
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCC--CcccccEEEEecccccchHHH
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPG--VRPVPLEIHIQGVDITNFEAR 1555 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~--~rpv~l~~~i~~~~~~~~~~~ 1555 (2158)
.+ +...+..|.+.+|+..|.=++|||... .+++...--..+..+-.-..+ ..|-.+...+......
T Consensus 172 mg------Fe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~----- 240 (567)
T KOG0345|consen 172 MG------FEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEAD----- 240 (567)
T ss_pred cc------HHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHH-----
Confidence 88 888889999999999999999999865 334443221111111110111 1222222222111110
Q ss_pred HHhcChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000114 1556 MQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2158)
Q Consensus 1556 ~~~~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2158)
..+..+...+ ...+++|||.+|...++..+..+..+ ...
T Consensus 241 ------eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~---------------------------------l~~ 281 (567)
T KOG0345|consen 241 ------EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL---------------------------------LKK 281 (567)
T ss_pred ------HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH---------------------------------hCC
Confidence 1111111111 34688999999999988777555221 123
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~ 1713 (2158)
..+..+||.|++..|..+++.|++..-.||+||++++||+|+|++.+|| +++.|.....|+||+||+||.
T Consensus 282 ~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~Vv----------Q~DpP~~~~~FvHR~GRTaR~ 351 (567)
T KOG0345|consen 282 REIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVV----------QFDPPKDPSSFVHRCGRTARA 351 (567)
T ss_pred CcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEE----------ecCCCCChhHHHhhcchhhhc
Confidence 4588999999999999999999999999999999999999999999999 556667899999999999999
Q ss_pred CCCCceEEEEEecCChHHHHHHHhh
Q 000114 1714 LLDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
| +.|.|++|..+ +.+.|-.|+.
T Consensus 352 g--r~G~Aivfl~p-~E~aYveFl~ 373 (567)
T KOG0345|consen 352 G--REGNAIVFLNP-REEAYVEFLR 373 (567)
T ss_pred c--CccceEEEecc-cHHHHHHHHH
Confidence 7 89999999988 5567777876
No 72
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.6e-37 Score=407.33 Aligned_cols=336 Identities=18% Similarity=0.259 Sum_probs=249.5
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1330 PLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1330 ~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
......| |+..|+|+|.++|+.++.+.+ +|+++|||+|||+||++|++.. .+ .+|||+|+++|+.++...
T Consensus 450 ~~lk~~F-G~~sFRp~Q~eaI~aiL~GrD-VLVimPTGSGKSLcYQLPAL~~------~G--iTLVISPLiSLmqDQV~~ 519 (1195)
T PLN03137 450 VNNKKVF-GNHSFRPNQREIINATMSGYD-VFVLMPTGGGKSLTYQLPALIC------PG--ITLVISPLVSLIQDQIMN 519 (1195)
T ss_pred HHHHHHc-CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCccHHHHHHHHHHHc------CC--cEEEEeCHHHHHHHHHHH
Confidence 3445555 499999999999999998655 9999999999999999999842 34 899999999999987776
Q ss_pred HHHHhcCCCCcEEEEEcCCcchhhh-----cc----cCCcEEEeCHHHHH---HHHhhhhccccccceeEEEeccccccc
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMDLK-----LL----EKGQIIISTPEKWD---ALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~~~-----~l----~~~~IIV~TPe~l~---~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+.. .|+++..+.|+...... .+ ...+|+++|||++. .+.+..........+++|||||||++.
T Consensus 520 L~~-----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVS 594 (1195)
T PLN03137 520 LLQ-----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVS 594 (1195)
T ss_pred HHh-----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhh
Confidence 652 27888888887654311 11 34699999999985 234332222223558999999999997
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHH
Q 000114 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEAR 1555 (2158)
Q Consensus 1478 ~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~ 1555 (2158)
+ +|+.++.-+.++..+...+ ..+++++||||++. .+++...|+.....++. ....|| .+...+... .. ..
T Consensus 595 q-WGhDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~Rp-NL~y~Vv~k--~k--k~ 666 (1195)
T PLN03137 595 Q-WGHDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRP-NLWYSVVPK--TK--KC 666 (1195)
T ss_pred h-cccchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCcc-ceEEEEecc--ch--hH
Confidence 5 4566766666665555544 36789999999876 45788888765433332 222343 233322211 00 00
Q ss_pred HHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhccc
Q 000114 1556 MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHG 1635 (2158)
Q Consensus 1556 ~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~g 1635 (2158)
. ......+... ..+.++||||.|++.|+.++..|.. .+..
T Consensus 667 l----e~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~-----------------------------------~Gik 706 (1195)
T PLN03137 667 L----EDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQE-----------------------------------FGHK 706 (1195)
T ss_pred H----HHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHH-----------------------------------CCCC
Confidence 0 1111122221 2356799999999999999976632 3556
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1636 v~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
+.+|||||++++|..+++.|.+|+++|||||++++||||+|++++|| |+..|.++.+|+||+|||||.|
T Consensus 707 a~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VI----------HydlPkSiEsYyQriGRAGRDG- 775 (1195)
T PLN03137 707 AAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI----------HHSLPKSIEGYHQECGRAGRDG- 775 (1195)
T ss_pred eeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEE----------EcCCCCCHHHHHhhhcccCCCC-
Confidence 89999999999999999999999999999999999999999999999 8889999999999999999987
Q ss_pred CCceEEEEEecCChHHHHHHHhhCC
Q 000114 1716 DNSGKCVILCHAPRKEYYKKFLYDA 1740 (2158)
Q Consensus 1716 d~~G~~iil~~~~~~~~~~k~l~~~ 1740 (2158)
..|.|++++...+...++.++...
T Consensus 776 -~~g~cILlys~~D~~~~~~lI~~~ 799 (1195)
T PLN03137 776 -QRSSCVLYYSYSDYIRVKHMISQG 799 (1195)
T ss_pred -CCceEEEEecHHHHHHHHHHHhcc
Confidence 689999999887777777777643
No 73
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.8e-37 Score=397.58 Aligned_cols=333 Identities=20% Similarity=0.311 Sum_probs=251.9
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+++.| ||..|+|+|.++++.++.++ +++++||||||||+||++|++. ..+ .+|||+|+++|+.|++..+.
T Consensus 3 l~~~~-g~~~~r~~Q~~ai~~~l~g~-dvlv~apTGsGKTl~y~lp~l~------~~~--~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 3 LKTVF-GLSSFRPVQLEVINAVLLGR-DCFVVMPTGGGKSLCYQLPALC------SDG--ITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hHhhc-CCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHhHHHHHHHHH------cCC--cEEEEecHHHHHHHHHHHHH
Confidence 34555 59999999999999999866 5999999999999999999983 234 79999999999999999887
Q ss_pred HHhcCCCCcEEEEEcCCcchhh-----hc--ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChH
Q 000114 1412 IKFGQGLGMRVVELTGETAMDL-----KL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~~~~~-----~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~ 1484 (2158)
. .|+.+..++|+..... .. ....+|+++|||++....+.+.......++++|||||||++++ +|+.+
T Consensus 73 ~-----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~-~g~~f 146 (470)
T TIGR00614 73 A-----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ-WGHDF 146 (470)
T ss_pred H-----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc-ccccc
Confidence 3 2678888888766441 11 1245899999999754322111111467899999999999975 46677
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChH
Q 000114 1485 EVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~ 1562 (2158)
+..+.++..+.... ++.+++++|||+++. .++..+++.....++.... .|| .+...+..... . . ...
T Consensus 147 r~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~-~r~-nl~~~v~~~~~-~---~----~~~ 215 (470)
T TIGR00614 147 RPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF-DRP-NLYYEVRRKTP-K---I----LED 215 (470)
T ss_pred HHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC-CCC-CcEEEEEeCCc-c---H----HHH
Confidence 77777776666554 478899999999873 6788888876544443322 222 22222221110 0 0 011
Q ss_pred HHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCC
Q 000114 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2158)
Q Consensus 1563 ~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~ 1642 (2158)
....+... .+++.+||||+|++.|+.++..|.. .+..+..|||+
T Consensus 216 l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~~-----------------------------------~g~~~~~~H~~ 259 (470)
T TIGR00614 216 LLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQN-----------------------------------LGIAAGAYHAG 259 (470)
T ss_pred HHHHHHHh-cCCCceEEEECcHHHHHHHHHHHHh-----------------------------------cCCCeeEeeCC
Confidence 12222222 4566779999999999999976632 24568899999
Q ss_pred CCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEE
Q 000114 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2158)
Q Consensus 1643 l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~i 1722 (2158)
|+.++|..+++.|++|.++|||||+++++|||+|++++|| |+..|.++.+|+||+|||||.| ..|.|+
T Consensus 260 l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI----------~~~~P~s~~~y~Qr~GRaGR~G--~~~~~~ 327 (470)
T TIGR00614 260 LEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVI----------HYSLPKSMESYYQESGRAGRDG--LPSECH 327 (470)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEE----------EeCCCCCHHHHHhhhcCcCCCC--CCceEE
Confidence 9999999999999999999999999999999999999999 7778889999999999999987 689999
Q ss_pred EEecCChHHHHHHHhhC
Q 000114 1723 ILCHAPRKEYYKKFLYD 1739 (2158)
Q Consensus 1723 il~~~~~~~~~~k~l~~ 1739 (2158)
+++...+...+++++.+
T Consensus 328 ~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 328 LFYAPADINRLRRLLME 344 (470)
T ss_pred EEechhHHHHHHHHHhc
Confidence 99999888888877764
No 74
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.1e-38 Score=382.44 Aligned_cols=388 Identities=26% Similarity=0.430 Sum_probs=299.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
++-|+|++++.++ ..+++|+|+|.|.+|||++|+.||...+.. +. |+||.+|-+||.+|.|+++...|+.
T Consensus 129 ~LDpFQ~~aI~Ci-dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQ--RVIYTSPIKALSNQKYREl~~EF~D---- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI-DRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQ--RVIYTSPIKALSNQKYRELLEEFKD---- 198 (1041)
T ss_pred ccCchHhhhhhhh-cCCceEEEEeecCCCcchHHHHHHHHHHHh---cC--eEEeeChhhhhcchhHHHHHHHhcc----
Confidence 6899999999888 457789999999999999999999988877 44 9999999999999999999999974
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHhhcC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
|+..|||.+.+ ..+.-+|+|.|.+-+++-+ +...++.|.+||+||+|.+-+ +||-+||..+- .++
T Consensus 199 -VGLMTGDVTIn----P~ASCLVMTTEILRsMLYR--GSEvmrEVaWVIFDEIHYMRDkERGVVWEETII-------llP 264 (1041)
T KOG0948|consen 199 -VGLMTGDVTIN----PDASCLVMTTEILRSMLYR--GSEVMREVAWVIFDEIHYMRDKERGVVWEETII-------LLP 264 (1041)
T ss_pred -cceeecceeeC----CCCceeeeHHHHHHHHHhc--cchHhheeeeEEeeeehhccccccceeeeeeEE-------ecc
Confidence 88899998866 4568999999999887755 566789999999999999988 68999987542 248
Q ss_pred CCceEEEeccCCCChHHHHHHhccC-CCceEecCCCCcccccEEEEec---------------ccccchHHHHHhcCh--
Q 000114 1500 NKIRIVALSTSLANAKDLGEWIGAT-SHGLFNFPPGVRPVPLEIHIQG---------------VDITNFEARMQAMTK-- 1561 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~dl~~wl~~~-~~~i~~f~~~~rpv~l~~~i~~---------------~~~~~~~~~~~~~~k-- 1561 (2158)
.++|.|+||||+||+.++|+|+..- ...+.....++||.|++-++.+ |...++...+..+.+
T Consensus 265 ~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 8999999999999999999998543 2334455678999999877533 112223332222111
Q ss_pred -------------------------HHHHHHHHhH-hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCccc
Q 000114 1562 -------------------------PTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615 (2158)
Q Consensus 1562 -------------------------~~~~~i~~~~-~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~ 1615 (2158)
..|..+.-.. ....|+|||+-|++.|+..|..+..........+. .
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~--------~ 416 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKE--------L 416 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHH--------H
Confidence 1222222111 34579999999999999999888554322211111 1
Q ss_pred chhh----HhhhhH--------HHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEe
Q 000114 1616 VEPF----IDNIQE--------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2158)
Q Consensus 1616 l~~~----~~~i~d--------~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~ 1683 (2158)
++.. ++.+.+ +....++..|||+||+||-+--++.|+-+|..|-++||+||-+++.|+|.|+.+||..
T Consensus 417 V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT 496 (1041)
T KOG0948|consen 417 VETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT 496 (1041)
T ss_pred HHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe
Confidence 1111 111111 3455678899999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH-HHHHHhh-CCCccccchhhHHHHHHHHHHhc
Q 000114 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE-YYKKFLY-DAFPVESHLHHFLHDNFNAEIVA 1761 (2158)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~-~~~k~l~-~~~piES~L~~~l~d~l~aeI~~ 1761 (2158)
..+.|||..+++ .+--+|+||.|||||.|.|..|.|+++.++.... .-+.++. .+.|+.|.++-.....+|---+.
T Consensus 497 ~~rKfDG~~fRw--issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlRvE 574 (1041)
T KOG0948|consen 497 AVRKFDGKKFRW--ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLLRVE 574 (1041)
T ss_pred eccccCCcceee--ecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHc
Confidence 999999997655 4789999999999999999999999999998544 3444554 78899998865555555544333
Q ss_pred C
Q 000114 1762 G 1762 (2158)
Q Consensus 1762 ~ 1762 (2158)
+
T Consensus 575 e 575 (1041)
T KOG0948|consen 575 E 575 (1041)
T ss_pred c
Confidence 3
No 75
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=367.62 Aligned_cols=351 Identities=19% Similarity=0.231 Sum_probs=273.9
Q ss_pred HHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh--cCCCceEEEEEcccHHHHHHHH
Q 000114 1331 LYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA--SETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1331 ~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~--~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
..+.+-. +|..++.+|+++|+..+.|.+ ||.+|.||||||++|++|+++++... .+..++-|+||+|||+||.|++
T Consensus 80 t~kgLke~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtF 158 (758)
T KOG0343|consen 80 TLKGLKEAKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTF 158 (758)
T ss_pred HHHhHhhcCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHH
Confidence 3444433 599999999999999999887 99999999999999999999998764 3444678999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHH
Q 000114 1408 RDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e 1485 (2158)
..+. +.+.+.+++.+.+.|+.... ...+.+.+|+||||+++..++.... ...-.++.++|+|||+.+++.+
T Consensus 159 evL~-kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~-~f~t~~lQmLvLDEADR~LDMG----- 231 (758)
T KOG0343|consen 159 EVLN-KVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENP-NFSTSNLQMLVLDEADRMLDMG----- 231 (758)
T ss_pred HHHH-HHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcC-CCCCCcceEEEeccHHHHHHHh-----
Confidence 9999 78888899999999987765 4567788999999999988776532 2345689999999999999877
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecC---CCCcccccEEEEecccccchHHHHHhcCh
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP---PGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~---~~~rpv~l~~~i~~~~~~~~~~~~~~~~k 1561 (2158)
+-..+..|.+.++...|.+++|||-.. ..|++..--..+ .++..+ ....|..+...+...+..+...
T Consensus 232 -Fk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP-~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~------- 302 (758)
T KOG0343|consen 232 -FKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDP-VYVSVHENAVAATPSNLQQSYVIVPLEDKID------- 302 (758)
T ss_pred -HHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCC-cEEEEeccccccChhhhhheEEEEehhhHHH-------
Confidence 667777788888999999999999876 567766422222 122211 1223444444433333222211
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
..+..|..| ...++|||++|.+++..++..++.. + .+..+..+||
T Consensus 303 ~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rl-------------------------------r--pg~~l~~L~G 347 (758)
T KOG0343|consen 303 MLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRL-------------------------------R--PGIPLLALHG 347 (758)
T ss_pred HHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhc-------------------------------C--CCCceeeecc
Confidence 233344443 4577999999999999998776431 1 3445788999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
+|++..|..+...|.....-||+||++++||+|+|++.+|| ..+.|..+.+|+||+||+.|. +..|.+
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwVi----------Q~DCPedv~tYIHRvGRtAR~--~~~G~s 415 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVI----------QVDCPEDVDTYIHRVGRTARY--KERGES 415 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEE----------EecCchhHHHHHHHhhhhhcc--cCCCce
Confidence 99999999999999999999999999999999999999999 567788899999999999996 589999
Q ss_pred EEEecCChHHHHHHHhhC-CCcccc
Q 000114 1722 VILCHAPRKEYYKKFLYD-AFPVES 1745 (2158)
Q Consensus 1722 iil~~~~~~~~~~k~l~~-~~piES 1745 (2158)
+++..+++++++.+-|++ ..|++.
T Consensus 416 ll~L~psEeE~~l~~Lq~k~I~i~~ 440 (758)
T KOG0343|consen 416 LLMLTPSEEEAMLKKLQKKKIPIKE 440 (758)
T ss_pred EEEEcchhHHHHHHHHHHcCCCHHh
Confidence 999999987776666654 355543
No 76
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.8e-37 Score=403.39 Aligned_cols=409 Identities=28% Similarity=0.392 Sum_probs=308.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|-++|++++.. +..+++|+||||||||||.++..+|...+..+ -+++|++|.|||.+|.+++|...+
T Consensus 119 ~LD~fQ~~a~~~-Ler~esVlV~ApTssGKTvVaeyAi~~al~~~-----------qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 119 ELDPFQQEAIAI-LERGESVLVCAPTSSGKTVVAEYAIALALRDG-----------QRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CcCHHHHHHHHH-HhCCCcEEEEccCCCCcchHHHHHHHHHHHcC-----------CceEeccchhhhhhhHHHHHHHHh
Confidence 689999999985 56667899999999999999999999888754 269999999999999999999988
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (2158)
+..--.++.+|||.+.+. .+.++|+|-|-+..+..+.. ..+..+..||+||+|.+.| +||.++|.++-.
T Consensus 187 gdv~~~vGL~TGDv~IN~----~A~clvMTTEILRnMlyrg~--~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~---- 256 (1041)
T COG4581 187 GDVADMVGLMTGDVSINP----DAPCLVMTTEILRNMLYRGS--ESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL---- 256 (1041)
T ss_pred hhhhhhccceecceeeCC----CCceEEeeHHHHHHHhccCc--ccccccceEEEEeeeeccccccchhHHHHHHh----
Confidence 743234689999998775 58899999998855555543 5788999999999999999 799999988764
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEee-------ccCChh--HHHHHhhHHHH
Q 000114 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------QVKKPL--QRFQLMNDLCY 724 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~-------~~~~~~--~~~~~l~~~~~ 724 (2158)
.+..+++|+||||+||.++++.|+......++......+||+|+.+++..- ...... ......+..+.
T Consensus 257 ---lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 257 ---LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred ---cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 477899999999999999999999987778889999999999999876532 111110 00000000000
Q ss_pred ----------------------------------HHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHhhccccccccc
Q 000114 725 ----------------------------------EKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767 (2158)
Q Consensus 725 ----------------------------------~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~ 767 (2158)
..+... ...-|+|+|+-|++.|+..+..+...-.....-
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~---- 409 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE---- 409 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCc----
Confidence 011111 124589999999999999999887432211100
Q ss_pred ccCch-hHHHHHhhhhcc---------CcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCC
Q 000114 768 KEDSV-SREILQSHTDMV---------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (2158)
Q Consensus 768 ~~~~~-~~~~l~~~~~~~---------~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP 837 (2158)
... -..++....... .-..+..++..|+|+|||||-+..|..|+.+|..|.++|+++|.|++.|+|.|
T Consensus 410 --~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP 487 (1041)
T COG4581 410 --KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP 487 (1041)
T ss_pred --HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc
Confidence 001 122333332222 22456778899999999999999999999999999999999999999999999
Q ss_pred ceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc--HHHHHHh-hcCCCcccchhhHhhHH
Q 000114 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE--LRYYLSL-MNQQLPIESQFVSKLAD 914 (2158)
Q Consensus 838 ~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~--~~~y~~l-l~~~~pieS~l~~~l~d 914 (2158)
+.+||+-....+|... ..+++..+|.||.|||||.|.|..|.+|++-.... ......+ .....|+.|+|...+..
T Consensus 488 artvv~~~l~K~dG~~--~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~m 565 (1041)
T COG4581 488 ARTVVFTSLSKFDGNG--HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNM 565 (1041)
T ss_pred ccceeeeeeEEecCCc--eeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhH
Confidence 9999999888888654 67899999999999999999999999999955432 3334444 45567888888776655
Q ss_pred HHHHHHHhccccChHHHHHHHHhhHH
Q 000114 915 QLNAEIVLGTVQNAKEACNWIGYTYL 940 (2158)
Q Consensus 915 ~lnaeI~~~~i~~~~~~~~wl~~t~~ 940 (2158)
.+|-- .+...+.+-..+..+|.
T Consensus 566 ilnll----~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 566 ILNLL----RVEGLQTAEDLLERSFA 587 (1041)
T ss_pred HHhhh----hhcccCcHHHHHHhhHH
Confidence 55532 33334444455555554
No 77
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-37 Score=339.82 Aligned_cols=351 Identities=15% Similarity=0.261 Sum_probs=267.6
Q ss_pred CCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEE
Q 000114 1318 DLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396 (2158)
Q Consensus 1318 dl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~I 1396 (2158)
-...+..-+|+...++.+|. ||..|..+|+.|++.++.+++ |++.|..|+|||.+|-+.+++.+.-.... .+++++
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~~r~--tQ~lil 101 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDISVRE--TQALIL 101 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeecccccce--eeEEEe
Confidence 33445556788999999999 899999999999999999666 99999999999999999888877653333 389999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcch--hhhcccCC-cEEEeCHHHHHHHHhhhhccccccceeEEEeccc
Q 000114 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 1473 (2158)
Q Consensus 1397 aP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~--~~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEa 1473 (2158)
+|||+|+.|+.+.+. .++..+++.+-.+.|+.+. +.+.+.-+ +++.+||+++..+.++ .....+.++++|+||+
T Consensus 102 sPTRELa~Qi~~vi~-alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr--~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 102 SPTRELAVQIQKVIL-ALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR--RSLRTRAVKMLVLDEA 178 (400)
T ss_pred cChHHHHHHHHHHHH-HhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh--ccccccceeEEEeccH
Confidence 999999999999998 6888889999999988764 44444444 9999999999999887 4455788999999999
Q ss_pred ccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccch
Q 000114 1474 HLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552 (2158)
Q Consensus 1474 H~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~ 1552 (2158)
|.+++.+ +-.++..+.+.+++.+|++++|||+|. ..+..+++-..+..++.-+....-.-+...+...+..++
T Consensus 179 DemL~kg------fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew 252 (400)
T KOG0328|consen 179 DEMLNKG------FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW 252 (400)
T ss_pred HHHHHhh------HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh
Confidence 9888764 555566666677999999999999985 334444443333333321111111001111111111111
Q ss_pred HHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000114 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2158)
Q Consensus 1553 ~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2158)
. ...+..+... ..-.+++|||||++.+..+...+.. .
T Consensus 253 K-------fdtLcdLYd~-LtItQavIFcnTk~kVdwLtekm~~-----------------------------------~ 289 (400)
T KOG0328|consen 253 K-------FDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRE-----------------------------------A 289 (400)
T ss_pred h-------HhHHHHHhhh-hehheEEEEecccchhhHHHHHHHh-----------------------------------h
Confidence 0 0111112222 2346799999999999888766532 2
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
.+.|..+||+|++++|..+.+.|++|+.+||++|++.+||+|+|.+.+|| ||+.|.....|+||+||.||
T Consensus 290 nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslvi----------NYDLP~nre~YIHRIGRSGR 359 (400)
T KOG0328|consen 290 NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVI----------NYDLPNNRELYIHRIGRSGR 359 (400)
T ss_pred CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEE----------ecCCCccHHHHhhhhccccc
Confidence 34588999999999999999999999999999999999999999999999 88888889999999999999
Q ss_pred CCCCCceEEEEEecCChHHHHHH
Q 000114 1713 PLLDNSGKCVILCHAPRKEYYKK 1735 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~~~~~~~k 1735 (2158)
-| +.|.++-|+.+.+...+..
T Consensus 360 FG--RkGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 360 FG--RKGVAINFVKSDDLRILRD 380 (400)
T ss_pred cC--CcceEEEEecHHHHHHHHH
Confidence 76 9999999999887655543
No 78
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.1e-37 Score=397.31 Aligned_cols=328 Identities=21% Similarity=0.267 Sum_probs=237.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||+.|+|+|.++++.++.++ +++++||||||||++|++|++.. +..+|||+|+++|+.|++..+
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~-dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGR-DCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQVLQL 71 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHHHHHH
Confidence 389999999999999999886 59999999999999999998752 126899999999999999988
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~l 643 (2158)
.. .|+.+..++|+....... ....+|+++|||++....+.........++++|||||||++.+ .|..+
T Consensus 72 ~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~-~g~~f 146 (470)
T TIGR00614 72 KA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ-WGHDF 146 (470)
T ss_pred HH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc-ccccc
Confidence 75 478888888876644221 2357999999998621111110001356799999999999875 22222
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhH
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlpn~--~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~ 721 (2158)
.....++.... ...++++++++|||+++. .++..+++.. .+.+...+..|| .+...+. .... .....
T Consensus 147 r~~~~~l~~l~-~~~~~~~~l~lTAT~~~~~~~di~~~l~l~--~~~~~~~s~~r~-nl~~~v~---~~~~-~~~~~--- 215 (470)
T TIGR00614 147 RPDYKALGSLK-QKFPNVPIMALTATASPSVREDILRQLNLK--NPQIFCTSFDRP-NLYYEVR---RKTP-KILED--- 215 (470)
T ss_pred HHHHHHHHHHH-HHcCCCceEEEecCCCHHHHHHHHHHcCCC--CCcEEeCCCCCC-CcEEEEE---eCCc-cHHHH---
Confidence 22222222211 234678999999998753 4566666543 222222222233 2222111 1111 11111
Q ss_pred HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEec
Q 000114 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (2158)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hH 801 (2158)
+...+.....++.+||||+|++.|+.++..|...+ ..++.+|
T Consensus 216 -l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g-------------------------------------~~~~~~H 257 (470)
T TIGR00614 216 -LLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG-------------------------------------IAAGAYH 257 (470)
T ss_pred -HHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC-------------------------------------CCeeEee
Confidence 22223323445677999999999999999987643 2367789
Q ss_pred CCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccE
Q 000114 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (2158)
Q Consensus 802 agl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (2158)
|+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |++|. |+.+|+||+|||||.| ..|.
T Consensus 258 ~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~P~------s~~~y~Qr~GRaGR~G--~~~~ 325 (470)
T TIGR00614 258 AGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH----YSLPK------SMESYYQESGRAGRDG--LPSE 325 (470)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE----eCCCC------CHHHHHhhhcCcCCCC--CCce
Confidence 9999999999999999999999999999999999999999999 77665 7889999999999988 5699
Q ss_pred EEEEcCCCcHHHHHHhhc
Q 000114 882 GIIITGHSELRYYLSLMN 899 (2158)
Q Consensus 882 ~iil~~~~~~~~y~~ll~ 899 (2158)
|+++++..+...+..++.
T Consensus 326 ~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 326 CHLFYAPADINRLRRLLM 343 (470)
T ss_pred EEEEechhHHHHHHHHHh
Confidence 999999998887777654
No 79
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-37 Score=349.52 Aligned_cols=345 Identities=19% Similarity=0.261 Sum_probs=261.9
Q ss_pred CCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEccc
Q 000114 1321 PLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2158)
Q Consensus 1321 p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ 1399 (2158)
++...+|..+..+.+-. |++.+||+|..|++.++.|.+ +|-||.||||||.+|.+|+++.|..+..+. -++++.||
T Consensus 8 ~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrd-cig~AkTGsGKT~AFaLPil~rLsedP~gi--FalvlTPT 84 (442)
T KOG0340|consen 8 PFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRD-CIGCAKTGSGKTAAFALPILNRLSEDPYGI--FALVLTPT 84 (442)
T ss_pred chhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccc-cccccccCCCcchhhhHHHHHhhccCCCcc--eEEEecch
Confidence 34444555566666655 799999999999999999777 999999999999999999999999853333 79999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcch---hhhcccCCcEEEeCHHHHHHHHhhhhc--cccccceeEEEecccc
Q 000114 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAM---DLKLLEKGQIIISTPEKWDALSRRWKQ--RKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1400 raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~---~~~~l~~~~IIV~TPe~l~~l~r~~~~--~~~l~~v~llIiDEaH 1474 (2158)
|+|+.|+.+.|. .+++.+++++..+.|++.. +..+-.++|++|+|||++..+++.... ...++++.++|+|||+
T Consensus 85 rELA~QiaEQF~-alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD 163 (442)
T KOG0340|consen 85 RELALQIAEQFI-ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD 163 (442)
T ss_pred HHHHHHHHHHHH-HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh
Confidence 999999999999 7888899999999998764 355667889999999999888876422 2257899999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCc--eEecCCCCcccc----cEEEEeccc
Q 000114 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHG--LFNFPPGVRPVP----LEIHIQGVD 1548 (2158)
Q Consensus 1475 ~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~--i~~f~~~~rpv~----l~~~i~~~~ 1548 (2158)
.+.+.. +-..+..+.+.++.+.|.++||||+.+. +....++.... .|.. ....+++ +...+...+
T Consensus 164 rvL~~~------f~d~L~~i~e~lP~~RQtLlfSATitd~--i~ql~~~~i~k~~a~~~-e~~~~vstvetL~q~yI~~~ 234 (442)
T KOG0340|consen 164 RVLAGC------FPDILEGIEECLPKPRQTLLFSATITDT--IKQLFGCPITKSIAFEL-EVIDGVSTVETLYQGYILVS 234 (442)
T ss_pred hhhccc------hhhHHhhhhccCCCccceEEEEeehhhH--HHHhhcCCcccccceEE-eccCCCCchhhhhhheeecc
Confidence 987654 3444555556667788999999999764 33334433221 1111 1111111 111111000
Q ss_pred ccchHHHHHhcChHH--HHHHHHhH-hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhH
Q 000114 1549 ITNFEARMQAMTKPT--FTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE 1625 (2158)
Q Consensus 1549 ~~~~~~~~~~~~k~~--~~~i~~~~-~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d 1625 (2158)
. -.+.+ +..+...- .+.+.++|||++...|+.++..|
T Consensus 235 ~---------~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l------------------------------- 274 (442)
T KOG0340|consen 235 I---------DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTL------------------------------- 274 (442)
T ss_pred h---------hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHH-------------------------------
Confidence 0 01111 22222221 24788999999999999888655
Q ss_pred HHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHH
Q 000114 1626 EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQ 1705 (2158)
Q Consensus 1626 ~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQ 1705 (2158)
+.+...+..+|+.|++.+|...+..|+++.++|||||++++||+|+|.+.+|| |++.|-.+.+|+|
T Consensus 275 ----~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVv----------N~diPr~P~~yiH 340 (442)
T KOG0340|consen 275 ----KNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVV----------NHDIPRDPKDYIH 340 (442)
T ss_pred ----hhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEE----------ecCCCCCHHHHHH
Confidence 22566789999999999999999999999999999999999999999999999 8899999999999
Q ss_pred hhccCCCCCCCCceEEEEEecCChHHHHH
Q 000114 1706 MMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1706 r~GRaGR~g~d~~G~~iil~~~~~~~~~~ 1734 (2158)
|+||+.|+| +.|.++.++.+.+.+.+.
T Consensus 341 RvGRtARAG--R~G~aiSivt~rDv~l~~ 367 (442)
T KOG0340|consen 341 RVGRTARAG--RKGMAISIVTQRDVELLQ 367 (442)
T ss_pred hhcchhccc--CCcceEEEechhhHHHHH
Confidence 999999998 788888888876655443
No 80
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5e-37 Score=361.23 Aligned_cols=361 Identities=20% Similarity=0.281 Sum_probs=267.0
Q ss_pred cccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-------CCCceEEEEE
Q 000114 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-------ETGVMRAVYI 1396 (2158)
Q Consensus 1325 ~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-------~~~~~~~v~I 1396 (2158)
+.++...+..+-. ||..|+|||.+|++..++. .++|..|.||||||.+|++|++-.+.... ...+|.++++
T Consensus 250 ~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~-rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiil 328 (673)
T KOG0333|consen 250 SGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQN-RDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIIL 328 (673)
T ss_pred cCCCHHHHHHHHhcCCCCCchHHHhhccchhcc-CCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeee
Confidence 3455555665544 7999999999999988874 45999999999999999999998776532 1124699999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccc
Q 000114 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 1473 (2158)
Q Consensus 1397 aP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEa 1473 (2158)
+|||+|+.|+..+-. +|++.+|++++.+.|+.+.+.+ .-..++|+|+||+++++.+-+ ....++++..||+|||
T Consensus 329 aptReLaqqIeeEt~-kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len--r~lvl~qctyvvldea 405 (673)
T KOG0333|consen 329 APTRELAQQIEEETN-KFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN--RYLVLNQCTYVVLDEA 405 (673)
T ss_pred chHHHHHHHHHHHHH-HhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH--HHHHhccCceEeccch
Confidence 999999999999988 8999999999999999887754 445679999999999876654 3456889999999999
Q ss_pred ccccCCC-CChHHHHHHHHHHHHhh----------------cC--CCceEEEeccCCCC-hHHHHH-HhccCCCceEecC
Q 000114 1474 HLIGGQG-GPVLEVIVSRMRYIASQ----------------VE--NKIRIVALSTSLAN-AKDLGE-WIGATSHGLFNFP 1532 (2158)
Q Consensus 1474 H~l~~~~-g~~~e~~isrl~~i~~~----------------~~--~~~riV~lSATl~n-~~dl~~-wl~~~~~~i~~f~ 1532 (2158)
+.+.+.+ -+.+..++..|-.-... .. .-.+.+.||||++. .+.++. ||.... +....
T Consensus 406 drmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv--~vtig 483 (673)
T KOG0333|consen 406 DRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV--VVTIG 483 (673)
T ss_pred hhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe--EEEec
Confidence 9998754 44555555544211100 01 12789999999988 445554 444332 22223
Q ss_pred CCCccccc-EEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCC
Q 000114 1533 PGVRPVPL-EIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLW 1611 (2158)
Q Consensus 1533 ~~~rpv~l-~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~ 1611 (2158)
...+|.|. +..+........ ...+..++.. ....|+|||+|+++.|..+|..|-
T Consensus 484 ~~gk~~~rveQ~v~m~~ed~k--------~kkL~eil~~-~~~ppiIIFvN~kk~~d~lAk~Le---------------- 538 (673)
T KOG0333|consen 484 SAGKPTPRVEQKVEMVSEDEK--------RKKLIEILES-NFDPPIIIFVNTKKGADALAKILE---------------- 538 (673)
T ss_pred cCCCCccchheEEEEecchHH--------HHHHHHHHHh-CCCCCEEEEEechhhHHHHHHHHh----------------
Confidence 33344432 222222211110 1122233333 346789999999999999997662
Q ss_pred CcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCC
Q 000114 1612 PAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQ 1691 (2158)
Q Consensus 1612 ~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~ 1691 (2158)
..++.+..+|||-++++|..+++.|++|..+|||||++++||||+|++.+||
T Consensus 539 -------------------K~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVi--------- 590 (673)
T KOG0333|consen 539 -------------------KAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVI--------- 590 (673)
T ss_pred -------------------hccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceee---------
Confidence 2567799999999999999999999999999999999999999999999999
Q ss_pred CCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHH---HHh----hCCCccccch
Q 000114 1692 ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK---KFL----YDAFPVESHL 1747 (2158)
Q Consensus 1692 ~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~---k~l----~~~~piES~L 1747 (2158)
|++..-++.+|+||+||+||+| +.|.|+.|+...+.+.|- ..| ....|+|...
T Consensus 591 -nydmaksieDYtHRIGRTgRAG--k~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~ 650 (673)
T KOG0333|consen 591 -NYDMAKSIEDYTHRIGRTGRAG--KSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELAN 650 (673)
T ss_pred -ecchhhhHHHHHHHhccccccc--cCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhcc
Confidence 7888889999999999999998 899999998887744322 222 2455666655
No 81
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-38 Score=370.98 Aligned_cols=381 Identities=21% Similarity=0.272 Sum_probs=270.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCC---CCCCCCCcE--EE
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDD---GSFNHSNYK--IV 554 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~---~~~~~~~~k--il 554 (2158)
||..+..++ .||..|++||+.++|.|..+.-++|..|.||||||++|-+||+..+....... ......+++ ++
T Consensus 188 lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~L 267 (731)
T KOG0347|consen 188 LPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIAL 267 (731)
T ss_pred CCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeE
Confidence 344444444 69999999999999999999777999999999999999999999665432210 011223444 99
Q ss_pred EEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhH-HHHHHhccCCCccccccceEEee
Q 000114 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIID 630 (2158)
Q Consensus 555 ~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek-ld~l~r~~~~~~~l~~v~lIIiD 630 (2158)
+++|||+||.|+.+.+.......+++|..++|+....+++ ...++|+|+||++ |.++.........+.+++++|+|
T Consensus 268 V~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlD 347 (731)
T KOG0347|consen 268 VVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLD 347 (731)
T ss_pred EecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEc
Confidence 9999999999999999999999999999999999877765 3588999999999 46665554444567889999999
Q ss_pred ccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE-----------ecCCcccc
Q 000114 631 EIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-----------FDNSYRPV 698 (2158)
Q Consensus 631 EaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~-----------f~~~~rpv 698 (2158)
|+|+|.. +....+..|+..+. -++.....|.+.+|||+.-. ...-+........-. -.-.+|.-
T Consensus 348 EaDRmvekghF~Els~lL~~L~--e~~~~~qrQTlVFSATlt~~--~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~k 423 (731)
T KOG0347|consen 348 EADRMVEKGHFEELSKLLKHLN--EEQKNRQRQTLVFSATLTLV--LQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGK 423 (731)
T ss_pred cHHHHhhhccHHHHHHHHHHhh--hhhcccccceEEEEEEeehh--hcChhHHhhhccchhhhhhHHHHHHHHHhCccCC
Confidence 9999986 56666777776654 23445678999999998621 111111000000000 00011111
Q ss_pred cceeEEEeeccCChhHHHHHhhHHHHHHHHHHh--------------CCCeEEEEecChHHHHHHHHHHHHHhhcccccc
Q 000114 699 PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA--------------GKHQVLIFVHSRKETAKTARAIRDTALENDTLG 764 (2158)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~--------------~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~ 764 (2158)
| .++...... .. ...+.+..+++. -.+++|||||+...+.+++-.|....+..-
T Consensus 424 p---kiiD~t~q~--~t----a~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~--- 491 (731)
T KOG0347|consen 424 P---KIIDLTPQS--AT----ASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPL--- 491 (731)
T ss_pred C---eeEecCcch--hH----HHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCc---
Confidence 1 112111111 00 111111111110 167899999999999999999887654432
Q ss_pred cccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEe
Q 000114 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844 (2158)
Q Consensus 765 ~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~ 844 (2158)
.+||.|.+..|...++.|++..-.|||||+++|||+|+|+|.+||+
T Consensus 492 ----------------------------------~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH 537 (731)
T KOG0347|consen 492 ----------------------------------PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH 537 (731)
T ss_pred ----------------------------------hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE
Confidence 2399999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhh---c--C---CCcccchhhHhhHH--
Q 000114 845 GTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM---N--Q---QLPIESQFVSKLAD-- 914 (2158)
Q Consensus 845 ~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll---~--~---~~pieS~l~~~l~d-- 914 (2158)
|..|- +..-|+||.||+.|++ ..|..+++|.+.+...|.++. + + -+||+..++..+.+
T Consensus 538 YqVPr----------tseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRv 605 (731)
T KOG0347|consen 538 YQVPR----------TSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERV 605 (731)
T ss_pred eecCC----------ccceeEeccccccccc--CCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHH
Confidence 54443 4446999999999988 669999999999998887752 1 1 26787777776554
Q ss_pred HHHHHHHhcc
Q 000114 915 QLNAEIVLGT 924 (2158)
Q Consensus 915 ~lnaeI~~~~ 924 (2158)
.|..||..-.
T Consensus 606 rLA~ei~~~e 615 (731)
T KOG0347|consen 606 RLAREIDKLE 615 (731)
T ss_pred HHHHHHHHhh
Confidence 3344444433
No 82
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-37 Score=371.38 Aligned_cols=337 Identities=22% Similarity=0.304 Sum_probs=254.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCC--CCCcEEEEEcccHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFN--HSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~--~~~~kil~iaP~kaLa~q~~~ 568 (2158)
.|+..|||+|+.+++.+..+++ +++|||||||||.+|++|++..+......+.... ...+.+++++|||+||.|++.
T Consensus 92 ~~~~~ptpvQk~sip~i~~Grd-l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 92 SGYTKPTPVQKYSIPIISGGRD-LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred ccccCCCcceeeccceeecCCc-eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 6899999999999999888766 9999999999999999999999887644221111 135899999999999999999
Q ss_pred HHHhhcccCCcEEEEEeCCCccCHh---hhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc--CChhh
Q 000114 569 NLSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPV 642 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d--~rg~~ 642 (2158)
+.++.....++++...+|+.+...+ ...+++|+|+||+++ |.+.++. ..+++++++|+|||+.|.| .|+|.
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~---i~l~~~k~~vLDEADrMlD~mgF~p~ 247 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK---ISLDNCKFLVLDEADRMLDEMGFEPQ 247 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce---eehhhCcEEEecchHHhhhhcccccc
Confidence 9999888888999999999665443 346899999999998 6665554 5688899999999999999 69999
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEEecCC--cccccceeEEEeeccCChhHHHHH
Q 000114 643 LESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNS--YRPVPLSQQYIGIQVKKPLQRFQL 718 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riv~lSATlpn~--~dv~~~l~~~~~~~~~~f~~~--~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2158)
++.|+.+.-. ......|.+++|||.|.. ...+.|+..+ ..+.-... -.+..+.+.+..+........
T Consensus 248 Ir~iv~~~~~---~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~---yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~--- 318 (482)
T KOG0335|consen 248 IRKIVEQLGM---PPKNNRQTLLFSATFPKEIQRLAADFLKDN---YIFLAVGRVGSTSENITQKILFVNEMEKRSK--- 318 (482)
T ss_pred HHHHhcccCC---CCccceeEEEEeccCChhhhhhHHHHhhcc---ceEEEEeeeccccccceeEeeeecchhhHHH---
Confidence 9988876521 123578899999999831 1222333321 12211111 112344455554444322221
Q ss_pred hhHHHHHHHHHHhC-----CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 719 MNDLCYEKVVAVAG-----KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 719 l~~~~~~~i~~~~~-----~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
+.+++... ..... ...++|||.+++.|..++..|...+.....+
T Consensus 319 Lldll~~~-~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sI------------------------------ 367 (482)
T KOG0335|consen 319 LLDLLNKD-DGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSI------------------------------ 367 (482)
T ss_pred HHHHhhcc-cCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceee------------------------------
Confidence 11111100 00001 2379999999999999999999877655444
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
||.-++.+|...++.|++|.+.|||||+++|||+|+|+|++||+ ||.|. ...+|+||+||+||
T Consensus 368 -------hg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yDmP~------d~d~YvHRIGRTGR 430 (482)
T KOG0335|consen 368 -------HGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----YDMPA------DIDDYVHRIGRTGR 430 (482)
T ss_pred -------cchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE----eecCc------chhhHHHhcccccc
Confidence 99999999999999999999999999999999999999999999 55554 46689999999999
Q ss_pred CCCCCccEEEEEcCCCc
Q 000114 874 PQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~ 890 (2158)
.| ..|.++.|++...
T Consensus 431 ~G--n~G~atsf~n~~~ 445 (482)
T KOG0335|consen 431 VG--NGGRATSFFNEKN 445 (482)
T ss_pred CC--CCceeEEEecccc
Confidence 88 7799999998543
No 83
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-37 Score=341.72 Aligned_cols=354 Identities=18% Similarity=0.280 Sum_probs=266.5
Q ss_pred cccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1325 ~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
--|+..++..+|. ||..|.|+|.+.++.++.+.+ +++-|..|+|||-+|.+|+++.+... ....++++++|||+||
T Consensus 90 ~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~--~~~IQ~~ilVPtrelA 166 (459)
T KOG0326|consen 90 YCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPK--KNVIQAIILVPTRELA 166 (459)
T ss_pred hhhhHHHHHHHHHhccCCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCcc--ccceeEEEEeecchhh
Confidence 3467788889998 899999999999999987655 99999999999999999999998763 3345899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-C
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q 1479 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~ 1479 (2158)
-|+.+.++ .+++.+|++|...+|+++... +.....+++|+||+++.++..+ .-..+++..++|+||||.+++ +
T Consensus 167 LQtSqvc~-~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K--gVa~ls~c~~lV~DEADKlLs~~ 243 (459)
T KOG0326|consen 167 LQTSQVCK-ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK--GVADLSDCVILVMDEADKLLSVD 243 (459)
T ss_pred HHHHHHHH-HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc--ccccchhceEEEechhhhhhchh
Confidence 99999888 788888999999999987653 3334459999999999998876 344689999999999998887 4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCC--CceEecCCCCcccccEEEEecccccchHHHHH
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS--HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~--~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~ 1557 (2158)
.++.++.++ ..+++..|++++|||+|.. +..|+..-. ...+|.-....+.-+..++..... ....
T Consensus 244 F~~~~e~li-------~~lP~~rQillySATFP~t--Vk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e---~qKv- 310 (459)
T KOG0326|consen 244 FQPIVEKLI-------SFLPKERQILLYSATFPLT--VKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEE---RQKV- 310 (459)
T ss_pred hhhHHHHHH-------HhCCccceeeEEecccchh--HHHHHHHhccCcceeehhhhhhhcchhhheeeech---hhhh-
Confidence 455555444 3568899999999999873 333332221 112222222222222111111110 0111
Q ss_pred hcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1558 ~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
..+..+... ..-.+.||||||...++.+|..+.+ +++.+.
T Consensus 311 ----hCLntLfsk-LqINQsIIFCNS~~rVELLAkKITe-----------------------------------lGyscy 350 (459)
T KOG0326|consen 311 ----HCLNTLFSK-LQINQSIIFCNSTNRVELLAKKITE-----------------------------------LGYSCY 350 (459)
T ss_pred ----hhHHHHHHH-hcccceEEEeccchHhHHHHHHHHh-----------------------------------ccchhh
Confidence 112222233 3356899999999999999976632 677899
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
++|+.|.+++|++|+..|++|..+.||||+.+.||||++++.||| |+++|.+...|+||+||+||-| .
T Consensus 351 yiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI----------NFDfpk~aEtYLHRIGRsGRFG--h 418 (459)
T KOG0326|consen 351 YIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI----------NFDFPKNAETYLHRIGRSGRFG--H 418 (459)
T ss_pred HHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE----------ecCCCCCHHHHHHHccCCccCC--C
Confidence 999999999999999999999999999999999999999999999 7888889999999999999976 8
Q ss_pred ceEEEEEecCChHHHHH---HHh-hCCCccccchhh
Q 000114 1718 SGKCVILCHAPRKEYYK---KFL-YDAFPVESHLHH 1749 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~---k~l-~~~~piES~L~~ 1749 (2158)
.|.|+-+..-.++..+. .-| .+-.|+-+.++.
T Consensus 419 lGlAInLityedrf~L~~IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 419 LGLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDK 454 (459)
T ss_pred cceEEEEEehhhhhhHHHHHHHhccccccCCCcCCc
Confidence 89999876665433222 222 255566665543
No 84
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.2e-36 Score=390.82 Aligned_cols=405 Identities=27% Similarity=0.390 Sum_probs=306.2
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.+-++|++++..+-. +++|+||||||||||++++.|+...+.. +. +++|++|.+||.+|.+.++..+|++. --
T Consensus 119 ~LD~fQ~~a~~~Ler-~esVlV~ApTssGKTvVaeyAi~~al~~---~q--rviYTsPIKALsNQKyrdl~~~fgdv-~~ 191 (1041)
T COG4581 119 ELDPFQQEAIAILER-GESVLVCAPTSSGKTVVAEYAIALALRD---GQ--RVIYTSPIKALSNQKYRDLLAKFGDV-AD 191 (1041)
T ss_pred CcCHHHHHHHHHHhC-CCcEEEEccCCCCcchHHHHHHHHHHHc---CC--ceEeccchhhhhhhHHHHHHHHhhhh-hh
Confidence 689999999988755 6779999999999999999999988876 44 79999999999999999999999854 23
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHhhcC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
.++.+|||.+.+ ..+.++|+|.|.+-+++.+ ....+..+..||+||+|.+++ ++|.+||.++- .++
T Consensus 192 ~vGL~TGDv~IN----~~A~clvMTTEILRnMlyr--g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii-------~lP 258 (1041)
T COG4581 192 MVGLMTGDVSIN----PDAPCLVMTTEILRNMLYR--GSESLRDIEWVVFDEVHYIGDRERGVVWEEVII-------LLP 258 (1041)
T ss_pred hccceecceeeC----CCCceEEeeHHHHHHHhcc--CcccccccceEEEEeeeeccccccchhHHHHHH-------hcC
Confidence 468999998876 5679999999999888876 456789999999999999998 68999998874 347
Q ss_pred CCceEEEeccCCCChHHHHHHhccCC-CceEecCCCCcccccEEEEeccc-------c------cchHHHHHhcC-----
Q 000114 1500 NKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVD-------I------TNFEARMQAMT----- 1560 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~dl~~wl~~~~-~~i~~f~~~~rpv~l~~~i~~~~-------~------~~~~~~~~~~~----- 1560 (2158)
..+++|+||||++|+.+++.|++... ..++....+.||+|++.++..-. . ..+......+.
T Consensus 259 ~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~ 338 (1041)
T COG4581 259 DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEK 338 (1041)
T ss_pred CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchh
Confidence 78999999999999999999999654 34666678899999998874431 0 11111111110
Q ss_pred ----hH---------------------HHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCc
Q 000114 1561 ----KP---------------------TFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613 (2158)
Q Consensus 1561 ----k~---------------------~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~ 1613 (2158)
.+ ....+..++ ...-|+|+|+-|++.|+..+..+...-.... .+.
T Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~--------~~~ 410 (1041)
T COG4581 339 VRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLT--------EEK 410 (1041)
T ss_pred ccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccC--------CcH
Confidence 00 000111111 3456899999999999999987753222111 112
Q ss_pred cc-chhhH----hhh---------hHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccE
Q 000114 1614 EE-VEPFI----DNI---------QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHL 1679 (2158)
Q Consensus 1614 ~~-l~~~~----~~i---------~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~ 1679 (2158)
+. +..++ ..+ .-..+...+..|+++||+||-+..|..|+++|..|-++|++||.+++.|+|.|+.+
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart 490 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART 490 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc
Confidence 22 22221 111 22456778899999999999999999999999999999999999999999999999
Q ss_pred EEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh--HHHHHHHh-hCCCccccchhhHHHHHHH
Q 000114 1680 VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR--KEYYKKFL-YDAFPVESHLHHFLHDNFN 1756 (2158)
Q Consensus 1680 vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~--~~~~~k~l-~~~~piES~L~~~l~d~l~ 1756 (2158)
||+.+.+.|||..+ .+.+..+|.||.|||||.|.|..|.++++-.... ......+. ..+.|+.|.+.-.+.-.+|
T Consensus 491 vv~~~l~K~dG~~~--r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~miln 568 (1041)
T COG4581 491 VVFTSLSKFDGNGH--RWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILN 568 (1041)
T ss_pred eeeeeeEEecCCce--eecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHHHh
Confidence 99999999999865 5668999999999999999999999999954432 23333333 3677888887544433333
Q ss_pred HHHhcCcCCCHHHHHHHHHHhhh
Q 000114 1757 AEIVAGVIENKQDAVDYLTWTFM 1779 (2158)
Q Consensus 1757 aeI~~~~i~~~qd~id~l~~t~~ 1779 (2158)
- ..+...+.+-+.+..+|+
T Consensus 569 l----l~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 569 L----LRVEGLQTAEDLLERSFA 587 (1041)
T ss_pred h----hhhcccCcHHHHHHhhHH
Confidence 2 233444445566666665
No 85
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-36 Score=353.07 Aligned_cols=367 Identities=19% Similarity=0.203 Sum_probs=250.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC----CCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~----~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
++..+|.+|.|+||.+++++| ++|.|+||||||++|++|+++.+....+ ..++-+++|+||||||.|+|+.+.+.
T Consensus 156 ~i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 156 KISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 499999999999999999777 9999999999999999999999887522 23568999999999999999999976
Q ss_pred hcCCCCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC-CChHHHHHH
Q 000114 1414 FGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVS 1489 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~-g~~~e~~is 1489 (2158)
+....-+.-+.+.|+.... .++....+|+|+||+++.+++...+. ..+++++++|+||+|.|.+.+ +..+..++.
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~-i~~s~LRwlVlDEaDrlleLGfekdit~Il~ 313 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS-IKFSRLRWLVLDEADRLLELGFEKDITQILK 313 (708)
T ss_pred hcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch-heeeeeeEEEecchhHHHhccchhhHHHHHH
Confidence 6655445555666655432 33444559999999999998877543 347789999999999998854 556666666
Q ss_pred HHHHHHhh------cCCCceEEEeccCCCC-hHHHHHHhccCCCceEecC-------CC-------------------Cc
Q 000114 1490 RMRYIASQ------VENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP-------PG-------------------VR 1536 (2158)
Q Consensus 1490 rl~~i~~~------~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~-------~~-------------------~r 1536 (2158)
-+..+... ++...+-++||||+.+ ...+++.--.++ ..+..+ |. .-
T Consensus 314 ~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDp-v~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~i 392 (708)
T KOG0348|consen 314 AVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDP-VYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAI 392 (708)
T ss_pred HHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCc-eeeeccchhhhcCcchhhhhhcCCcccccccccccC
Confidence 65433221 2224778899999976 344443211111 001000 00 00
Q ss_pred ccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccc
Q 000114 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (2158)
Q Consensus 1537 pv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (2158)
|..+..++...+.. -++.++.--. ...... ....++|||+++.+.++.-+..+............ -....+.+
T Consensus 393 PeqL~qry~vVPpK---LRLV~Laa~L-~~~~k~-~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s--~~~~s~g~ 465 (708)
T KOG0348|consen 393 PEQLLQRYTVVPPK---LRLVALAALL-LNKVKF-EEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSS--GAPDSEGL 465 (708)
T ss_pred cHHhhhceEecCCc---hhHHHHHHHH-HHHhhh-hhhceeEEEEechhHHHHHHHHHHhhhhccccccc--CCcccCCC
Confidence 11111111111110 1111111111 111111 34557999999999998888777654433210000 00001111
Q ss_pred hhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCc
Q 000114 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHT 1696 (2158)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~ 1696 (2158)
. .-.+...+.-+||+|++++|..+++.|....-.||+||++++||+|+|.+.+|| .|+.
T Consensus 466 ~-----------~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vV----------QYd~ 524 (708)
T KOG0348|consen 466 P-----------PLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVV----------QYDP 524 (708)
T ss_pred h-----------hhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEE----------EeCC
Confidence 1 112233488899999999999999999999999999999999999999999999 4667
Q ss_pred CCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhh
Q 000114 1697 DYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1697 ~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
|.+..+|+||+||+.|.| ..|.+++|..+.+.+ |-+++.
T Consensus 525 P~s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~ 563 (708)
T KOG0348|consen 525 PFSTADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLK 563 (708)
T ss_pred CCCHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHH
Confidence 889999999999999998 789999999998877 555554
No 86
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.9e-35 Score=388.86 Aligned_cols=338 Identities=17% Similarity=0.282 Sum_probs=249.8
Q ss_pred ccccChhHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1324 VTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1324 ~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
...+....++..| ||..|+|+|.++++.+++++ ++++++|||||||+||++|++.. .+ .+|||+|+++|+
T Consensus 9 ~~~~~~~~l~~~f-G~~~~r~~Q~~ai~~il~g~-dvlv~apTGsGKTl~y~lpal~~------~g--~tlVisPl~sL~ 78 (607)
T PRK11057 9 LESLAKQVLQETF-GYQQFRPGQQEIIDAVLSGR-DCLVVMPTGGGKSLCYQIPALVL------DG--LTLVVSPLISLM 78 (607)
T ss_pred chhHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHHHc------CC--CEEEEecHHHHH
Confidence 3344455666666 59999999999999999855 59999999999999999999832 34 799999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-----cc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccc
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l 1476 (2158)
.|+++.++. + |+.+..+.+....... .+ ...+++++||+++.... +.......+++++||||||++
T Consensus 79 ~dqv~~l~~-~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~--~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 79 KDQVDQLLA-N----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDN--FLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred HHHHHHHHH-c----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChH--HHHHHhhCCCCEEEEeCcccc
Confidence 999998873 2 5677777776554321 11 23489999999985311 111222357899999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHH
Q 000114 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEA 1554 (2158)
Q Consensus 1477 ~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~ 1554 (2158)
.+ +|+.+...+.++..+.... ++.+++++|||+++. .++..+++.....++ .....||. +...+. ....
T Consensus 152 ~~-~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~r~n-l~~~v~--~~~~--- 222 (607)
T PRK11057 152 SQ-WGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDRPN-IRYTLV--EKFK--- 222 (607)
T ss_pred cc-ccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCCCCc-ceeeee--eccc---
Confidence 74 4566666666666655443 478899999999874 467777765543222 22222332 111111 0000
Q ss_pred HHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1555 RMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1555 ~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
.. ......+ .. ..++++||||+|++.|+.++..|.. .+.
T Consensus 223 ~~----~~l~~~l-~~-~~~~~~IIFc~tr~~~e~la~~L~~-----------------------------------~g~ 261 (607)
T PRK11057 223 PL----DQLMRYV-QE-QRGKSGIIYCNSRAKVEDTAARLQS-----------------------------------RGI 261 (607)
T ss_pred hH----HHHHHHH-Hh-cCCCCEEEEECcHHHHHHHHHHHHh-----------------------------------CCC
Confidence 00 0111111 12 4568899999999999999976632 234
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
.+..|||+|+.++|..+++.|++|.++|||||+++++|||+|++++|| |+..|.++.+|+||+|||||.|
T Consensus 262 ~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI----------~~d~P~s~~~y~Qr~GRaGR~G 331 (607)
T PRK11057 262 SAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV----------HFDIPRNIESYYQETGRAGRDG 331 (607)
T ss_pred CEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEE----------EeCCCCCHHHHHHHhhhccCCC
Confidence 589999999999999999999999999999999999999999999999 6778899999999999999987
Q ss_pred CCCceEEEEEecCChHHHHHHHhhCC
Q 000114 1715 LDNSGKCVILCHAPRKEYYKKFLYDA 1740 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~k~l~~~ 1740 (2158)
..|.|++++...+...+++++.+.
T Consensus 332 --~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 332 --LPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred --CCceEEEEeCHHHHHHHHHHHhcC
Confidence 678999999988888888888754
No 87
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.4e-35 Score=392.81 Aligned_cols=335 Identities=19% Similarity=0.261 Sum_probs=257.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHH
Q 000114 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1331 ~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
.++..|. |.+|+|+|.++++.+++++ +++++||||+|||+||++|++. ..+ .++||+|+++|+.|++..+
T Consensus 4 ~l~~~fg-~~~fr~~Q~~~i~~il~g~-dvlv~~PTG~GKTl~y~lpal~------~~g--~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 4 VLKRTFG-YDDFRPGQEEIISHVLDGR-DVLVVMPTGGGKSLCYQVPALL------LKG--LTVVISPLISLMKDQVDQL 73 (591)
T ss_pred HHHHhcC-CCCCCHHHHHHHHHHHcCC-CEEEEcCCCccHhHHHHHHHHH------cCC--cEEEEcCCHHHHHHHHHHH
Confidence 3555565 9999999999999999866 5999999999999999999883 244 7899999999999999988
Q ss_pred HHHhcCCCCcEEEEEcCCcchhhh-----cc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1411 EIKFGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
+. + |+.+..++|+...+.. .+ ...+|+++|||++... .|.......++++|||||||++. .+|+.
T Consensus 74 ~~-~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~--~~~~~l~~~~l~~iViDEaH~i~-~~g~~ 145 (591)
T TIGR01389 74 RA-A----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQD--YFLNMLQRIPIALVAVDEAHCVS-QWGHD 145 (591)
T ss_pred HH-c----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcCh--HHHHHHhcCCCCEEEEeCCcccc-cccCc
Confidence 84 2 6788888887665421 11 3459999999998532 22233345689999999999997 56788
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcCh
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k 1561 (2158)
++..+.++..+...++. .+++++|||.+. ..++..|++......+. .+..||. +...+... ... ..
T Consensus 146 frp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~n-l~~~v~~~--~~~-------~~ 213 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI-TSFDRPN-LRFSVVKK--NNK-------QK 213 (591)
T ss_pred cHHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCCC-cEEEEEeC--CCH-------HH
Confidence 88888888877766553 459999999876 45788999876554443 2333442 22222111 110 01
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
.....+.. ..++++||||+|++.|+.++..|.. .+..++.|||
T Consensus 214 ~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~-----------------------------------~g~~~~~~H~ 256 (591)
T TIGR01389 214 FLLDYLKK--HRGQSGIIYASSRKKVEELAERLES-----------------------------------QGISALAYHA 256 (591)
T ss_pred HHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHh-----------------------------------CCCCEEEEEC
Confidence 12222222 2367899999999999999976632 2345789999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
+|+.++|..+++.|.+|.++|||||+++++|||+|++++|| |+..|.++.+|+||+|||||.| ..|.|
T Consensus 257 ~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI----------~~~~p~s~~~y~Q~~GRaGR~G--~~~~~ 324 (591)
T TIGR01389 257 GLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVI----------HYDMPGNLESYYQEAGRAGRDG--LPAEA 324 (591)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEE----------EcCCCCCHHHHhhhhccccCCC--CCceE
Confidence 99999999999999999999999999999999999999999 7778889999999999999987 67889
Q ss_pred EEEecCChHHHHHHHhhCCCccc
Q 000114 1722 VILCHAPRKEYYKKFLYDAFPVE 1744 (2158)
Q Consensus 1722 iil~~~~~~~~~~k~l~~~~piE 1744 (2158)
++++...+...++.++.+..|.+
T Consensus 325 il~~~~~d~~~~~~~i~~~~~~~ 347 (591)
T TIGR01389 325 ILLYSPADIALLKRRIEQSEADD 347 (591)
T ss_pred EEecCHHHHHHHHHHHhccCCcH
Confidence 99999988888888888765543
No 88
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-36 Score=338.49 Aligned_cols=341 Identities=19% Similarity=0.268 Sum_probs=260.4
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000114 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2158)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~k 560 (2158)
|+.++.++ .+|..|+.||..++|.++.. ..|+|..+..|+|||.+|.|+||..+... ...+.+++|+|++
T Consensus 99 Pellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--------~~~PQ~iCLaPtr 170 (477)
T KOG0332|consen 99 PELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--------VVVPQCICLAPTR 170 (477)
T ss_pred HHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--------ccCCCceeeCchH
Confidence 55555556 68999999999999998865 46999999999999999999999887543 2356899999999
Q ss_pred HHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccCC
Q 000114 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2158)
Q Consensus 561 aLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~r 639 (2158)
+||.|+.+.+.+..+..++++....-+....+...-..+|+|+||+.+ |...+ .. ...+++++.+|+|||+.+.+.+
T Consensus 171 ELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~k-lk-~id~~kikvfVlDEAD~Mi~tq 248 (477)
T KOG0332|consen 171 ELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLK-LK-CIDLEKIKVFVLDEADVMIDTQ 248 (477)
T ss_pred HHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHH-HH-hhChhhceEEEecchhhhhhcc
Confidence 999999999999988888888777766655554445678999999997 54444 21 1457889999999999998855
Q ss_pred hhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcccc--CceEEecCCcccccceeEEEeeccCChhHHHH
Q 000114 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE--KGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (2158)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~--~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (2158)
|-.=.+ .+.....++..|++++|||.. +.++.|...-.+ +.++.-.....-.++.+.++.+. ....+++
T Consensus 249 G~~D~S-----~rI~~~lP~~~QllLFSATf~--e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~--~~~~K~~ 319 (477)
T KOG0332|consen 249 GFQDQS-----IRIMRSLPRNQQLLLFSATFV--EKVAAFALKIVPNANVIILKREELALDNIKQLYVLCA--CRDDKYQ 319 (477)
T ss_pred cccccc-----hhhhhhcCCcceEEeeechhH--HHHHHHHHHhcCCCceeeeehhhccccchhhheeecc--chhhHHH
Confidence 432222 122334567999999999976 667777654322 22333333333334555444333 3345555
Q ss_pred HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCe
Q 000114 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2158)
Q Consensus 718 ~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv 797 (2158)
.+.+ +|. ...-++.||||+|++.|.+++..+...| +.|
T Consensus 320 ~l~~-lyg----~~tigqsiIFc~tk~ta~~l~~~m~~~G-------------------------------------h~V 357 (477)
T KOG0332|consen 320 ALVN-LYG----LLTIGQSIIFCHTKATAMWLYEEMRAEG-------------------------------------HQV 357 (477)
T ss_pred HHHH-HHh----hhhhhheEEEEeehhhHHHHHHHHHhcC-------------------------------------cee
Confidence 5544 333 2236799999999999999999998765 346
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC
Q 000114 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2158)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2158)
...||.|.-++|..+.+.|+.|.-+|||+|+++|||||++.|++|||++.|.+.. .+-+...|+||+||+||- +
T Consensus 358 ~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~----~~pD~etYlHRiGRtGRF--G 431 (477)
T KOG0332|consen 358 SLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYT----GEPDYETYLHRIGRTGRF--G 431 (477)
T ss_pred EEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccC----CCCCHHHHHHHhcccccc--c
Confidence 7789999999999999999999999999999999999999999999965554433 346889999999999995 4
Q ss_pred CccEEEEEcCCCc
Q 000114 878 SYGEGIIITGHSE 890 (2158)
Q Consensus 878 ~~G~~iil~~~~~ 890 (2158)
+.|.++-+.+..+
T Consensus 432 kkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 432 KKGLAINLVDDKD 444 (477)
T ss_pred ccceEEEeecccC
Confidence 8899999888765
No 89
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.1e-35 Score=389.76 Aligned_cols=321 Identities=21% Similarity=0.304 Sum_probs=237.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||.+|+|+|.++++.++.++ +++++||||+|||++|++|++.. ...+|||+|+++|+.|++..+
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~-dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVisPl~sL~~dqv~~l 85 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGR-DCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVVSPLISLMKDQVDQL 85 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEEecHHHHHHHHHHHH
Confidence 599999999999999998875 49999999999999999999853 126899999999999999988
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHH--HHHhccCCCccccccceEEeeccccccc---C
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLLIIDEIHLLHD---N 638 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld--~l~r~~~~~~~l~~v~lIIiDEaH~l~d---~ 638 (2158)
... |+.+..+.+........ ....+++++|||++. .+... ....++++|||||||++.+ .
T Consensus 86 ~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 86 LAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEEEEeCccccccccCc
Confidence 763 67787777765543321 235789999999962 22221 2234689999999999875 2
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~--~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2158)
+.+.+..+ ..+ ....+.++++++|||+++. .++..+++.. .+........||. +...+ ..... ..
T Consensus 158 fr~~y~~L-~~l----~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~--~~~~~~~~~~r~n-l~~~v--~~~~~---~~ 224 (607)
T PRK11057 158 FRPEYAAL-GQL----RQRFPTLPFMALTATADDTTRQDIVRLLGLN--DPLIQISSFDRPN-IRYTL--VEKFK---PL 224 (607)
T ss_pred ccHHHHHH-HHH----HHhCCCCcEEEEecCCChhHHHHHHHHhCCC--CeEEEECCCCCCc-ceeee--eeccc---hH
Confidence 44444332 222 2234578999999998863 3455555432 3333343333442 22111 11111 11
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
.. +...+ ....++++||||+|+++|+.++..|...+ ..
T Consensus 225 ~~----l~~~l-~~~~~~~~IIFc~tr~~~e~la~~L~~~g-------------------------------------~~ 262 (607)
T PRK11057 225 DQ----LMRYV-QEQRGKSGIIYCNSRAKVEDTAARLQSRG-------------------------------------IS 262 (607)
T ss_pred HH----HHHHH-HhcCCCCEEEEECcHHHHHHHHHHHHhCC-------------------------------------CC
Confidence 11 11112 22346799999999999999999987643 23
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
++.+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+.|. |..+|+||+|||||.|
T Consensus 263 v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d~P~------s~~~y~Qr~GRaGR~G- 331 (607)
T PRK11057 263 AAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIESYYQETGRAGRDG- 331 (607)
T ss_pred EEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE----eCCCC------CHHHHHHHhhhccCCC-
Confidence 678899999999999999999999999999999999999999999999 66665 7889999999999998
Q ss_pred CCccEEEEEcCCCcHHHHHHhhcCC
Q 000114 877 DSYGEGIIITGHSELRYYLSLMNQQ 901 (2158)
Q Consensus 877 d~~G~~iil~~~~~~~~y~~ll~~~ 901 (2158)
..|.|+++++..+...+..++...
T Consensus 332 -~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 332 -LPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred -CCceEEEEeCHHHHHHHHHHHhcC
Confidence 559999999999988888776554
No 90
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-36 Score=341.92 Aligned_cols=337 Identities=20% Similarity=0.309 Sum_probs=259.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||.+|+|||+++.|.+|.+.+ ++.+|.||+|||++|++|-+-++...+...+ +..++.+|+++||++|+.|+....
T Consensus 238 ~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~--qr~~p~~lvl~ptreLalqie~e~ 314 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE--QRNGPGVLVLTPTRELALQIEGEV 314 (629)
T ss_pred ccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhh--ccCCCceEEEeccHHHHHHHHhHH
Confidence 6999999999999999999877 9999999999999999998766654332211 345678999999999999998887
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~i 646 (2158)
.+. ...|.+..++.|+.+...+. ..+..|+++||+++..|.... ...+..+-++|+|||+.++| ++.|.+..|
T Consensus 315 ~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n--~i~l~siTYlVlDEADrMLDMgFEpqIrki 391 (629)
T KOG0336|consen 315 KKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN--VINLASITYLVLDEADRMLDMGFEPQIRKI 391 (629)
T ss_pred hHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC--eeeeeeeEEEEecchhhhhcccccHHHHHH
Confidence 764 34477777777776665543 468899999999984443322 25678899999999999999 788888776
Q ss_pred HHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccce--eEEEeeccCChhHHHHHhhHHHH
Q 000114 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS--QQYIGIQVKKPLQRFQLMNDLCY 724 (2158)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~--~~~~~~~~~~~~~~~~~l~~~~~ 724 (2158)
+-.+ .++.+.++.|||.| +.|.+........++.++..+.--+... .+++.++. ...++..++.
T Consensus 392 lldi-------RPDRqtvmTSATWP--~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~--d~~k~~~~~~--- 457 (629)
T KOG0336|consen 392 LLDI-------RPDRQTVMTSATWP--EGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTT--DSEKLEIVQF--- 457 (629)
T ss_pred hhhc-------CCcceeeeecccCc--hHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecc--cHHHHHHHHH---
Confidence 5543 67899999999999 5666666666566666666655443221 22232222 2233333322
Q ss_pred HHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCC
Q 000114 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (2158)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl 804 (2158)
.+.......++||||.++.-|..+...|+-.++....+ ||+-
T Consensus 458 -f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~l-------------------------------------HG~r 499 (629)
T KOG0336|consen 458 -FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSL-------------------------------------HGNR 499 (629)
T ss_pred -HHHhcCCCceEEEEEechhhhhhccchhhhcccchhhc-------------------------------------cCCh
Confidence 23344557799999999988887777776655544333 9999
Q ss_pred CHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEE
Q 000114 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (2158)
Q Consensus 805 ~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (2158)
.+.||+..++.|++|+++|||||+++++|+|+|++++|++ ||.|. .+.+|+||+||+||+| ..|.++.
T Consensus 500 ~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yDFP~------nIeeYVHRvGrtGRaG--r~G~sis 567 (629)
T KOG0336|consen 500 EQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN----YDFPR------NIEEYVHRVGRTGRAG--RTGTSIS 567 (629)
T ss_pred hhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec----cCCCc------cHHHHHHHhcccccCC--CCcceEE
Confidence 9999999999999999999999999999999999999999 77765 7889999999999998 7899999
Q ss_pred EcCCCcHHHHHHh
Q 000114 885 ITGHSELRYYLSL 897 (2158)
Q Consensus 885 l~~~~~~~~y~~l 897 (2158)
+.+..+......+
T Consensus 568 ~lt~~D~~~a~eL 580 (629)
T KOG0336|consen 568 FLTRNDWSMAEEL 580 (629)
T ss_pred EEehhhHHHHHHH
Confidence 9998887665544
No 91
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.8e-35 Score=389.87 Aligned_cols=327 Identities=20% Similarity=0.267 Sum_probs=242.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||.+|+|+|.++++.++.++ +++++||||+|||++|++|++.. +..++||+|+++|+.|++..+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~-dvlv~~PTG~GKTl~y~lpal~~--------------~g~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGR-DVLVVMPTGGGKSLCYQVPALLL--------------KGLTVVISPLISLMKDQVDQL 73 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCccHhHHHHHHHHHc--------------CCcEEEEcCCHHHHHHHHHHH
Confidence 489999999999999999886 59999999999999999998742 125899999999999999988
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHH--HHHhccCCCccccccceEEeecccccccCChh
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld--~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~ 641 (2158)
+.. |+.+..++|+.+..... ....+|+++|||++. .+.+. ....++++|||||||++.+ .|.
T Consensus 74 ~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~----l~~~~l~~iViDEaH~i~~-~g~ 144 (591)
T TIGR01389 74 RAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNM----LQRIPIALVAVDEAHCVSQ-WGH 144 (591)
T ss_pred HHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHH----HhcCCCCEEEEeCCccccc-ccC
Confidence 773 78899999887654322 246789999999872 22222 2345789999999999864 232
Q ss_pred hHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHh
Q 000114 642 VLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2158)
Q Consensus 642 ~le~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l 719 (2158)
.+.....++...... .+..+++++|||.+. ..++..+++... +..+..+..|| .+..... .... ...
T Consensus 145 ~frp~y~~l~~l~~~-~~~~~vi~lTAT~~~~~~~~i~~~l~~~~--~~~~~~~~~r~-nl~~~v~--~~~~---~~~-- 213 (591)
T TIGR01389 145 DFRPEYQRLGSLAER-FPQVPRIALTATADAETRQDIRELLRLAD--ANEFITSFDRP-NLRFSVV--KKNN---KQK-- 213 (591)
T ss_pred ccHHHHHHHHHHHHh-CCCCCEEEEEeCCCHHHHHHHHHHcCCCC--CCeEecCCCCC-CcEEEEE--eCCC---HHH--
Confidence 222222333222222 335569999999874 346777776542 22333333344 2222221 1111 111
Q ss_pred hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEE
Q 000114 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (2158)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~ 799 (2158)
.+.+.+.. ..+.++||||+|++.|+.++..|...+ ..++.
T Consensus 214 --~l~~~l~~-~~~~~~IIf~~sr~~~e~la~~L~~~g-------------------------------------~~~~~ 253 (591)
T TIGR01389 214 --FLLDYLKK-HRGQSGIIYASSRKKVEELAERLESQG-------------------------------------ISALA 253 (591)
T ss_pred --HHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCC-------------------------------------CCEEE
Confidence 12222222 236789999999999999999887543 23578
Q ss_pred ecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCc
Q 000114 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (2158)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (2158)
+||||+.++|..+++.|.+|.++|||||+++++|||+|++++||+ |+++. |..+|+||+|||||.| ..
T Consensus 254 ~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~~p~------s~~~y~Q~~GRaGR~G--~~ 321 (591)
T TIGR01389 254 YHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH----YDMPG------NLESYYQEAGRAGRDG--LP 321 (591)
T ss_pred EECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE----cCCCC------CHHHHhhhhccccCCC--CC
Confidence 899999999999999999999999999999999999999999999 77765 7889999999999988 56
Q ss_pred cEEEEEcCCCcHHHHHHhhcCCCcc
Q 000114 880 GEGIIITGHSELRYYLSLMNQQLPI 904 (2158)
Q Consensus 880 G~~iil~~~~~~~~y~~ll~~~~pi 904 (2158)
|.|+++++..+...+..++....|-
T Consensus 322 ~~~il~~~~~d~~~~~~~i~~~~~~ 346 (591)
T TIGR01389 322 AEAILLYSPADIALLKRRIEQSEAD 346 (591)
T ss_pred ceEEEecCHHHHHHHHHHHhccCCc
Confidence 8999999999988888887765553
No 92
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-35 Score=345.34 Aligned_cols=345 Identities=23% Similarity=0.315 Sum_probs=248.9
Q ss_pred CCCCCCCHHHHHHHHHHHcC--------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSS--------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~--------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
.+++.+.|+|..++|.++.. ..++.|.||||||||++|.+||++.+..... +..++|+|+|+++|
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v-------~~LRavVivPtr~L 227 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV-------KRLRAVVIVPTREL 227 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc-------cceEEEEEeeHHHH
Confidence 57889999999999998642 2359999999999999999999999976532 35799999999999
Q ss_pred HHHHHHHHHhhcccCCcEEEEEeCCCccCHhhh--------ccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI--------EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 563 a~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~--------~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
+.|+++.|.++....|+.|+.++|..++..+.. ...+|+|+||+++ |.+....+ ..+++++++||||||
T Consensus 228 ~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~--f~Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKS--FDLKHLRFLVIDEAD 305 (620)
T ss_pred HHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCC--cchhhceEEEechHH
Confidence 999999999999999999999999988876542 1349999999998 87775332 678999999999999
Q ss_pred cccc-CChhhHHHHHHHHH------------HHHh---------------hccccccEEEEccccCC-hHHHHHHHhccc
Q 000114 634 LLHD-NRGPVLESIVARTV------------RQIE---------------TTKEHIRLVGLSATLPN-YEDVALFLRVNL 684 (2158)
Q Consensus 634 ~l~d-~rg~~le~iv~r~~------------~~~~---------------~~~~~~riv~lSATlpn-~~dv~~~l~~~~ 684 (2158)
+|++ .+...+..++..+. +... ...++...+.+|||+.. +..+..+--..|
T Consensus 306 Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P 385 (620)
T KOG0350|consen 306 RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP 385 (620)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC
Confidence 9987 34433333332221 1110 01223346777888762 334443322221
Q ss_pred cCceEEec----CCcc-cccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhc
Q 000114 685 EKGLFYFD----NSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALE 759 (2158)
Q Consensus 685 ~~~~~~f~----~~~r-pv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (2158)
.++... ..|+ |..+....+..... +..+.........+..++|+|++|...+.+++..|.-...+
T Consensus 386 --rl~~v~~~~~~ryslp~~l~~~~vv~~~~--------~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~ 455 (620)
T KOG0350|consen 386 --RLFHVSKPLIGRYSLPSSLSHRLVVTEPK--------FKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS 455 (620)
T ss_pred --ceEEeecccceeeecChhhhhceeecccc--------cchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc
Confidence 122222 2222 11222222221111 11111122334445679999999999999999988732111
Q ss_pred ccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCce
Q 000114 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839 (2158)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v 839 (2158)
. ...+..+.|+++...|...++.|+.|.++||||+++++||+|+.++
T Consensus 456 ~---------------------------------~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v 502 (620)
T KOG0350|consen 456 D---------------------------------NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDV 502 (620)
T ss_pred c---------------------------------cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCccccc
Confidence 0 1123335899999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhc
Q 000114 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (2158)
Q Consensus 840 ~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 899 (2158)
++||+ ||+|. +...|+||+||+||+| ..|.|+.+....+...+.++++
T Consensus 503 ~~VIN----Yd~P~------~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 503 DNVIN----YDPPA------SDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred ceEee----cCCCc------hhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHH
Confidence 99999 88774 7889999999999999 5599999999888887777654
No 93
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-36 Score=352.75 Aligned_cols=387 Identities=20% Similarity=0.263 Sum_probs=267.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc---------CCCceE--E
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---------ETGVMR--A 1393 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---------~~~~~~--~ 1393 (2158)
.|+.+.++++-. ||..|++||..+++++..+.-.++-.|.||||||++|-+||+..+.... ....++ +
T Consensus 187 ~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~ 266 (731)
T KOG0347|consen 187 FLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIA 266 (731)
T ss_pred CCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCccee
Confidence 466777888765 8999999999999999998777999999999999999999998554321 111234 9
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhccc-CCcEEEeCHHHHHHHHhhhhc-cccccceeEEE
Q 000114 1394 VYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE-KGQIIISTPEKWDALSRRWKQ-RKYVQQVSLFI 1469 (2158)
Q Consensus 1394 v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~-~~~IIV~TPe~l~~l~r~~~~-~~~l~~v~llI 1469 (2158)
++++|||+||.|+.+.+. ......++++..++|+.... .+.++ .++|||+||+++..++..-.. -..+++++++|
T Consensus 267 LV~tPTRELa~QV~~Hl~-ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLV 345 (731)
T KOG0347|consen 267 LVVTPTRELAHQVKQHLK-AIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLV 345 (731)
T ss_pred EEecChHHHHHHHHHHHH-HhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEE
Confidence 999999999999999998 56667899999999998764 34444 559999999999888765332 33688999999
Q ss_pred ecccccccCCCCChHHHHHHHHHHHH-hhcCCCceEEEeccCCCChH--HHHHHhccCCCc---------eEecCCCCcc
Q 000114 1470 IDELHLIGGQGGPVLEVIVSRMRYIA-SQVENKIRIVALSTSLANAK--DLGEWIGATSHG---------LFNFPPGVRP 1537 (2158)
Q Consensus 1470 iDEaH~l~~~~g~~~e~~isrl~~i~-~~~~~~~riV~lSATl~n~~--dl~~wl~~~~~~---------i~~f~~~~rp 1537 (2158)
+||+|++...+ .|+.+-.-+..+. ++.....|.+.+|||+.-.. .+..--...... ++. .-..|.
T Consensus 346 lDEaDRmvekg--hF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk-~ig~~~ 422 (731)
T KOG0347|consen 346 LDEADRMVEKG--HFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK-KIGFRG 422 (731)
T ss_pred EccHHHHhhhc--cHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH-HhCccC
Confidence 99999998654 3444444444433 34456789999999985321 111000000000 000 000111
Q ss_pred cccEEEEecccccchHHHH-----Hh--cChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccC
Q 000114 1538 VPLEIHIQGVDITNFEARM-----QA--MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL 1610 (2158)
Q Consensus 1538 v~l~~~i~~~~~~~~~~~~-----~~--~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~ 1610 (2158)
-|--+.+ .+.......+ .+ ..+..|....-. .-.+++|||||+...+..++-.|-
T Consensus 423 kpkiiD~--t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~-ryPGrTlVF~NsId~vKRLt~~L~--------------- 484 (731)
T KOG0347|consen 423 KPKIIDL--TPQSATASTLTESLIECPPLEKDLYLYYFLT-RYPGRTLVFCNSIDCVKRLTVLLN--------------- 484 (731)
T ss_pred CCeeEec--CcchhHHHHHHHHhhcCCccccceeEEEEEe-ecCCceEEEechHHHHHHHHHHHh---------------
Confidence 1111111 0101111100 00 000000000000 125679999999999988875542
Q ss_pred CCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecC
Q 000114 1611 WPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDG 1690 (2158)
Q Consensus 1611 ~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~ 1690 (2158)
.+...-..+|+.|.+..|-..++.|++..-.|||||++++||+|+|++.+||
T Consensus 485 --------------------~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVI-------- 536 (731)
T KOG0347|consen 485 --------------------NLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVI-------- 536 (731)
T ss_pred --------------------hcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEE--------
Confidence 2444567899999999999999999999999999999999999999999999
Q ss_pred CCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhh-----C---CCccccchhhHHHHH--HHHHHh
Q 000114 1691 QENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLY-----D---AFPVESHLHHFLHDN--FNAEIV 1760 (2158)
Q Consensus 1691 ~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~-----~---~~piES~L~~~l~d~--l~aeI~ 1760 (2158)
||.+|-+..-|+||.||+.|++ ..|..+++|.+.+...|+++.. + -+|++..+...+.+- +..||.
T Consensus 537 --HYqVPrtseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~ 612 (731)
T KOG0347|consen 537 --HYQVPRTSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREID 612 (731)
T ss_pred --EeecCCccceeEeccccccccc--CCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999996 8999999999998888887644 1 246666554444432 234444
Q ss_pred cCcCCC
Q 000114 1761 AGVIEN 1766 (2158)
Q Consensus 1761 ~~~i~~ 1766 (2158)
.-.+.+
T Consensus 613 ~~e~k~ 618 (731)
T KOG0347|consen 613 KLEIKS 618 (731)
T ss_pred Hhhhhh
Confidence 444433
No 94
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-34 Score=327.21 Aligned_cols=378 Identities=17% Similarity=0.208 Sum_probs=272.4
Q ss_pred CCCcCCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhc-CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCC
Q 000114 1312 PPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYN-TDDNVLVAAPTGSGKTICSEFAILRNHQKASETG 1389 (2158)
Q Consensus 1312 ~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~-~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~ 1389 (2158)
|.+|+.....+.-..|+++.++.+|. +|..|+.||..+++.++. ...|+|..+..|+|||.||.|++|.+......
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~-- 159 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVV-- 159 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcccc--
Confidence 66777777777777889999999998 899999999999999885 45799999999999999999999988766333
Q ss_pred ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEE
Q 000114 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469 (2158)
Q Consensus 1390 ~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llI 1469 (2158)
.|.+++|+|+|+||.|+.+.+. ..|+..++++....-+........-..+|+|+||+.+.+++.+++ ...++.++.+|
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~-eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk-~id~~kikvfV 237 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVE-EMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLK-CIDLEKIKVFV 237 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHH-HhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHH-hhChhhceEEE
Confidence 3489999999999999999998 678776666665554442222122234899999999998887754 34588999999
Q ss_pred ecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEeccc
Q 000114 1470 IDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548 (2158)
Q Consensus 1470 iDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~ 1548 (2158)
+|||+.+.+.+|.. ..-..|...++.+.|++++|||... ...++.-+-.....++.-+....--++..... .
T Consensus 238 lDEAD~Mi~tqG~~-----D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv--~ 310 (477)
T KOG0332|consen 238 LDEADVMIDTQGFQ-----DQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYV--L 310 (477)
T ss_pred ecchhhhhhccccc-----ccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhhee--e
Confidence 99999888766422 1111222344779999999999865 23444433222222211111110001100000 0
Q ss_pred ccchHHHHHhcChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHH
Q 000114 1549 ITNFEARMQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE 1626 (2158)
Q Consensus 1549 ~~~~~~~~~~~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~ 1626 (2158)
. ......|+.+.... ..-+++||||.|++.|..++..+..
T Consensus 311 C--------~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~------------------------------ 352 (477)
T KOG0332|consen 311 C--------ACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRA------------------------------ 352 (477)
T ss_pred c--------cchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHh------------------------------
Confidence 0 11123344443321 3457899999999999999977732
Q ss_pred HHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHh
Q 000114 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706 (2158)
Q Consensus 1627 ~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr 1706 (2158)
.++.|..+||.|..++|..+.+.|+.|.-+|||+|++++||||++.+.+|| .||-...+....+...|+||
T Consensus 353 -----~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~Vv----NydlP~~~~~~pD~etYlHR 423 (477)
T KOG0332|consen 353 -----EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVV----NYDLPVKYTGEPDYETYLHR 423 (477)
T ss_pred -----cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEE----ecCCccccCCCCCHHHHHHH
Confidence 467799999999999999999999999999999999999999999999999 45544444344468999999
Q ss_pred hccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCc
Q 000114 1707 MGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGV 1763 (2158)
Q Consensus 1707 ~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~ 1763 (2158)
+||+||-| +.|.++-|.+..... ++...+.+||+.-|....
T Consensus 424 iGRtGRFG--kkG~a~n~v~~~~s~--------------~~mn~iq~~F~~~i~~~~ 464 (477)
T KOG0332|consen 424 IGRTGRFG--KKGLAINLVDDKDSM--------------NIMNKIQKHFNMKIKRLD 464 (477)
T ss_pred hccccccc--ccceEEEeecccCcH--------------HHHHHHHHHHhhcceecC
Confidence 99999976 899999999886421 123445667766554433
No 95
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.7e-34 Score=383.35 Aligned_cols=420 Identities=16% Similarity=0.217 Sum_probs=280.1
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc-cCCcEEE
Q 000114 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVR 582 (2158)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~-~~gi~v~ 582 (2158)
|-.++.++.+++++||||||||.++.+++++.... +.++++++|+|++|.|+++++.+.++ ..|..|+
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-----------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-----------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-----------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 33455677789999999999999999999987521 24899999999999999999975554 4566777
Q ss_pred EEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccc-ccc-CChhhHHHHHHHHHHHHhhcccc
Q 000114 583 ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQIETTKEH 660 (2158)
Q Consensus 583 ~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~-l~d-~rg~~le~iv~r~~~~~~~~~~~ 660 (2158)
...+..+ .....++|+|+||+.+-..... ...++++++|||||+|. ..+ +.+.. ++..+ ......+
T Consensus 79 y~vr~~~---~~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl~L~---ll~~i---~~~lr~d 146 (819)
T TIGR01970 79 YRVRGEN---KVSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADLGLA---LALDV---QSSLRED 146 (819)
T ss_pred EEEcccc---ccCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccchHHH---HHHHH---HHhcCCC
Confidence 6555432 2234689999999986322222 24688999999999994 333 33321 11112 1224568
Q ss_pred ccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEe
Q 000114 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFV 740 (2158)
Q Consensus 661 ~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv 740 (2158)
.|+|+||||+++ +.+..|++. .+.+.... +..|+++.+....... .....+...+...+ .. ..+++||||
T Consensus 147 lqlIlmSATl~~-~~l~~~l~~---~~vI~~~g--r~~pVe~~y~~~~~~~--~~~~~v~~~l~~~l-~~-~~g~iLVFl 216 (819)
T TIGR01970 147 LKILAMSATLDG-ERLSSLLPD---APVVESEG--RSFPVEIRYLPLRGDQ--RLEDAVSRAVEHAL-AS-ETGSILVFL 216 (819)
T ss_pred ceEEEEeCCCCH-HHHHHHcCC---CcEEEecC--cceeeeeEEeecchhh--hHHHHHHHHHHHHH-Hh-cCCcEEEEE
Confidence 999999999975 456777652 22333332 3344555554332211 11111222222212 11 257899999
Q ss_pred cChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCC
Q 000114 741 HSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820 (2158)
Q Consensus 741 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~ 820 (2158)
++++++..++..|.+... ....+..+||+|+.++|..+++.|++|.
T Consensus 217 pg~~eI~~l~~~L~~~~~----------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~ 262 (819)
T TIGR01970 217 PGQAEIRRVQEQLAERLD----------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGR 262 (819)
T ss_pred CCHHHHHHHHHHHHhhcC----------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCC
Confidence 999999999998875310 0133677899999999999999999999
Q ss_pred ceEEEechhhhhccCCCceEEEEecccc----cCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 821 VQVLVSTATLAWGVNLPAHTVIIKGTQI----YNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 821 i~VLVaT~tla~GVdlP~v~vVI~~~~~----yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
.+|||||+++++|||+|++++||+++.+ ||+.+| ...++|..++.||+|||||. ..|.||.+++..+..
T Consensus 263 rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 263 RKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQHQ 339 (819)
T ss_pred eEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHHH
Confidence 9999999999999999999999998654 777765 24678999999999999996 479999999876644
Q ss_pred HHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHH
Q 000114 893 YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLV 972 (2158)
Q Consensus 893 ~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li 972 (2158)
.+..+. .+.-..+.+. ..+..-...| +.+..+ +.| +..+....+
T Consensus 340 ~l~~~~-~PEI~r~~L~----~~~L~l~~~g-~~~~~~-~~~-----------------------------l~~P~~~~i 383 (819)
T TIGR01970 340 RLPAQD-EPEILQADLS----GLALELAQWG-AKDPSD-LRW-----------------------------LDAPPSVAL 383 (819)
T ss_pred hhhcCC-CcceeccCcH----HHHHHHHHcC-CCChhh-CCC-----------------------------CCCcCHHHH
Confidence 332211 1111122222 2111111112 111110 111 111112457
Q ss_pred HHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhC
Q 000114 973 HTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSL 1035 (2158)
Q Consensus 973 ~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~ 1035 (2158)
..|+..|...|+|+.+ | .+|++|+.||.++++|...+++..+....+. .+.+.|.++
T Consensus 384 ~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~-~~~~~iaa~ 440 (819)
T TIGR01970 384 AAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSAHSTGLA-ALACDLAAL 440 (819)
T ss_pred HHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHhhhcCCH-HHHHHHHHH
Confidence 8899999999999643 3 6899999999999999999998876554443 344444443
No 96
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=349.30 Aligned_cols=364 Identities=19% Similarity=0.255 Sum_probs=259.4
Q ss_pred cccccccccccCCCCCCCCCcCCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHH
Q 000114 1295 TVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373 (2158)
Q Consensus 1295 ~~~~i~~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~ 1373 (2158)
..+++...+...|...+.. .-..+......++-. ++..+||+|+-+++.+..+++ +++||+||||||.+
T Consensus 58 ~~i~v~~~G~~~p~~i~~f---------~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grd-l~acAqTGsGKT~a 127 (482)
T KOG0335|consen 58 NDIPVKVSGRDVPPHIPTF---------DEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRD-LMACAQTGSGKTAA 127 (482)
T ss_pred cceeeeccCCccCCCcccc---------cccchhHHHhhccccccccCCCcceeeccceeecCCc-eEEEccCCCcchHH
Confidence 4555555555555544311 111222223333333 699999999999999988776 99999999999999
Q ss_pred HHHHHHHHHHhhcC--------CCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh---hhcccCCcEE
Q 000114 1374 SEFAILRNHQKASE--------TGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQII 1442 (2158)
Q Consensus 1374 a~l~il~~l~~~~~--------~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~---~~~l~~~~II 1442 (2158)
|++|++.++....+ ...|++++++|||+||.|++++.+ +|.-..+.+++...|+.+.. ...-+.++|+
T Consensus 128 FLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~-k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIl 206 (482)
T KOG0335|consen 128 FLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR-KFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDIL 206 (482)
T ss_pred HHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH-hhcccccceeeeeeCCcchhhhhhhhccCccEE
Confidence 99999999887521 123799999999999999999999 67766788888888886543 2344567999
Q ss_pred EeCHHHHHHHHhhhhccccccceeEEEecccccccC-C-CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHH-H
Q 000114 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDL-G 1518 (2158)
Q Consensus 1443 V~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~-~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl-~ 1518 (2158)
|+||+++.++..+ ....+++++++|+|||+.+.+ . .+|.++.++.+..... ....|.+++|||.+.. ..+ +
T Consensus 207 vaTpGrL~d~~e~--g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~---~~~~qt~mFSAtfp~~iq~l~~ 281 (482)
T KOG0335|consen 207 VATPGRLKDLIER--GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP---KNNRQTLLFSATFPKEIQRLAA 281 (482)
T ss_pred EecCchhhhhhhc--ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCC---ccceeEEEEeccCChhhhhhHH
Confidence 9999999988876 456789999999999999988 3 4666666665543221 2478999999999762 222 2
Q ss_pred HHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHh---cCC-----CEEEEecChHHHHHH
Q 000114 1519 EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAK---NEK-----PALVFVPSRKYVRLT 1590 (2158)
Q Consensus 1519 ~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~---~~~-----~~IVFv~sr~~~~~~ 1590 (2158)
.++......+-+-........+...+..+......+. ...++.... ..+ .++|||.+++.|..+
T Consensus 282 ~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~--------Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l 353 (482)
T KOG0335|consen 282 DFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSK--------LLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADEL 353 (482)
T ss_pred HHhhccceEEEEeeeccccccceeEeeeecchhhHHH--------HHHHhhcccCCcccCCcccceEEEEeeccchhhHH
Confidence 3332211000000111111222222222222221111 111111101 122 699999999999999
Q ss_pred HHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccc
Q 000114 1591 AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670 (2158)
Q Consensus 1591 a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la 1670 (2158)
+..|.. .++....+||..++.+|...++.|++|++.|||||++++
T Consensus 354 ~~~l~~-----------------------------------~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Vaa 398 (482)
T KOG0335|consen 354 AAFLSS-----------------------------------NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAA 398 (482)
T ss_pred HHHHhc-----------------------------------CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhh
Confidence 876632 344577899999999999999999999999999999999
Q ss_pred cccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1671 WGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1671 ~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
||+|+|++.+|| +|+.|-.+.+|+||+||+||.| ..|.++.|+....
T Consensus 399 RGlDi~~V~hVI----------nyDmP~d~d~YvHRIGRTGR~G--n~G~atsf~n~~~ 445 (482)
T KOG0335|consen 399 RGLDIPNVKHVI----------NYDMPADIDDYVHRIGRTGRVG--NGGRATSFFNEKN 445 (482)
T ss_pred cCCCCCCCceeE----------EeecCcchhhHHHhccccccCC--CCceeEEEecccc
Confidence 999999999999 7788888999999999999997 7899999998544
No 97
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=6e-34 Score=381.40 Aligned_cols=410 Identities=18% Similarity=0.210 Sum_probs=276.3
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc-cCCcEEE
Q 000114 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVR 582 (2158)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~-~~gi~v~ 582 (2158)
|-.++.++.+++++||||||||.++.+++++.... +.+|++++|+|++|.|+++++.+.++ ..|..|+
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----------CCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 33445666789999999999999999999875321 23899999999999999999976543 4577888
Q ss_pred EEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhcccccc
Q 000114 583 ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIR 662 (2158)
Q Consensus 583 ~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~r 662 (2158)
..++..+.. ...++|+|+||+.+..+... ...++++++|||||+|.. +...+.++.-+........++.|
T Consensus 82 y~vr~~~~~---~~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER----~l~~Dl~L~ll~~i~~~lr~~lq 151 (812)
T PRK11664 82 YRMRAESKV---GPNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHER----SLQADLALALLLDVQQGLRDDLK 151 (812)
T ss_pred EEecCcccc---CCCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCcc----ccccchHHHHHHHHHHhCCccce
Confidence 777654322 23578999999987333332 246889999999999952 11111111211222233457899
Q ss_pred EEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecC
Q 000114 663 LVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742 (2158)
Q Consensus 663 iv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~s 742 (2158)
+|+||||++. +.+..|+.. ...+... -+..|+.+++....... +....+...+...+ . ...+++||||++
T Consensus 152 lilmSATl~~-~~l~~~~~~---~~~I~~~--gr~~pV~~~y~~~~~~~--~~~~~v~~~l~~~l-~-~~~g~iLVFlpg 221 (812)
T PRK11664 152 LLIMSATLDN-DRLQQLLPD---APVIVSE--GRSFPVERRYQPLPAHQ--RFDEAVARATAELL-R-QESGSLLLFLPG 221 (812)
T ss_pred EEEEecCCCH-HHHHHhcCC---CCEEEec--CccccceEEeccCchhh--hHHHHHHHHHHHHH-H-hCCCCEEEEcCC
Confidence 9999999974 456676642 2233322 23445555555332211 11111111222211 1 126789999999
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCce
Q 000114 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822 (2158)
Q Consensus 743 r~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~ 822 (2158)
++++..++..|...... ...+..+||+|+..+|..+++.|++|..+
T Consensus 222 ~~ei~~l~~~L~~~~~~----------------------------------~~~v~~Lhg~l~~~eq~~~~~~~~~G~rk 267 (812)
T PRK11664 222 VGEIQRVQEQLASRVAS----------------------------------DVLLCPLYGALSLAEQQKAILPAPAGRRK 267 (812)
T ss_pred HHHHHHHHHHHHHhccC----------------------------------CceEEEeeCCCCHHHHHHHhccccCCCeE
Confidence 99999999998753100 12366789999999999999999999999
Q ss_pred EEEechhhhhccCCCceEEEEeccc----ccCCCCCc----cccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHH
Q 000114 823 VLVSTATLAWGVNLPAHTVIIKGTQ----IYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYY 894 (2158)
Q Consensus 823 VLVaT~tla~GVdlP~v~vVI~~~~----~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y 894 (2158)
|||||+++++|||+|++++||++.. .||+.+|. ...+|..++.||+|||||. ..|.||.+++..+..
T Consensus 268 VlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~-- 342 (812)
T PRK11664 268 VVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAE-- 342 (812)
T ss_pred EEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHh--
Confidence 9999999999999999999999764 38888762 3568999999999999996 479999999976543
Q ss_pred HHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHH
Q 000114 895 LSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHT 974 (2158)
Q Consensus 895 ~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~ 974 (2158)
.+.....| .-+...|...+..-...| +.+..+ +.| +..+....+.+
T Consensus 343 -~l~~~~~P--EI~r~dL~~~~L~l~~~g-~~~~~~-~~~-----------------------------ld~P~~~~~~~ 388 (812)
T PRK11664 343 -RAAAQSEP--EILHSDLSGLLLELLQWG-CHDPAQ-LSW-----------------------------LDQPPAAALAA 388 (812)
T ss_pred -hCccCCCC--ceeccchHHHHHHHHHcC-CCCHHh-CCC-----------------------------CCCCCHHHHHH
Confidence 33323233 112222333222222222 122111 111 11111246789
Q ss_pred HHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCC
Q 000114 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP 1022 (2158)
Q Consensus 975 a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~ 1022 (2158)
|+..|...|+|+.+ ..+|++|+.||.++++|.-.+++..+...
T Consensus 389 A~~~L~~lgald~~-----g~lT~~G~~m~~lp~~Prla~~ll~a~~~ 431 (812)
T PRK11664 389 AKRLLQQLGALDGQ-----GRLTARGRKMAALGNDPRLAAMLVAAKED 431 (812)
T ss_pred HHHHHHHCCCCCCC-----CCcCHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 99999999999743 37899999999999999999988876443
No 98
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-34 Score=333.74 Aligned_cols=351 Identities=21% Similarity=0.276 Sum_probs=244.0
Q ss_pred CCCCCCHHHHHHHHHHhcC--------CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNT--------DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~--------~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
+++...|+|.++++.++.. ...+.|.||||||||+||.+||++.+.. .+-...|||+|+|+++|+.|+++.
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~-R~v~~LRavVivPtr~L~~QV~~~ 234 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSS-RPVKRLRAVVIVPTRELALQVYDT 234 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHcc-CCccceEEEEEeeHHHHHHHHHHH
Confidence 5789999999999998641 3459999999999999999999999987 444557999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcchhhh--cc------cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC-
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMDLK--LL------EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 1480 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~~~--~l------~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~- 1480 (2158)
|. ++....|+.|+.++|..+...+ .+ ...||+|+||+++.++++..+ ...+++++++||||||+|++..
T Consensus 235 f~-~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k-~f~Lk~LrfLVIDEADRll~qsf 312 (620)
T KOG0350|consen 235 FK-RLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTK-SFDLKHLRFLVIDEADRLLDQSF 312 (620)
T ss_pred HH-HhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCC-CcchhhceEEEechHHHHHHHHH
Confidence 99 6666679999999998765422 11 134999999999999988633 4579999999999999998632
Q ss_pred CChHHHHHHHHHH---------HHhh------------------cCCCceEEEeccCCCC-hHHHHHHhccCCCceEecC
Q 000114 1481 GPVLEVIVSRMRY---------IASQ------------------VENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP 1532 (2158)
Q Consensus 1481 g~~~e~~isrl~~---------i~~~------------------~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~ 1532 (2158)
-..+..+.+.++. +..+ +..+...+.+|||+.. +..+.++- ..-..++...
T Consensus 313 Q~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~-l~~Prl~~v~ 391 (620)
T KOG0350|consen 313 QEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLT-LHIPRLFHVS 391 (620)
T ss_pred HHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhh-cCCCceEEee
Confidence 1111111111110 1100 1123345666777644 33332221 1111111110
Q ss_pred CCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCC
Q 000114 1533 PGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612 (2158)
Q Consensus 1533 ~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~ 1612 (2158)
.|.-....+... ..+..-......+|.+..-.-+..+..++|+|++|..++..++..|.-...
T Consensus 392 ---~~~~~ryslp~~-l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~------------- 454 (620)
T KOG0350|consen 392 ---KPLIGRYSLPSS-LSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC------------- 454 (620)
T ss_pred ---cccceeeecChh-hhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc-------------
Confidence 000000000000 000000011112233222222225678899999999999999877742111
Q ss_pred cccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCC
Q 000114 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQE 1692 (2158)
Q Consensus 1613 ~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~ 1692 (2158)
.....+..+.|+++...|...++.|..|.++|||||++++||+|+.++..||
T Consensus 455 ------------------~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VI---------- 506 (620)
T KOG0350|consen 455 ------------------SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVI---------- 506 (620)
T ss_pred ------------------cccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEe----------
Confidence 1222355688999999999999999999999999999999999999999999
Q ss_pred CcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhC
Q 000114 1693 NAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYD 1739 (2158)
Q Consensus 1693 ~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~ 1739 (2158)
||+.|.+...|+||+||++|+| ..|.|+.+.....+..|.++|..
T Consensus 507 NYd~P~~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 507 NYDPPASDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred ecCCCchhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHHH
Confidence 8888999999999999999998 78999999999988888888873
No 99
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-34 Score=328.24 Aligned_cols=341 Identities=18% Similarity=0.276 Sum_probs=253.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+..+. .||.+||-||+.+||-++++.+ ++..|-||||||.+|++|+++.+......+ ....++.+++++||
T Consensus 26 LD~RllkAi~~lG~ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa~iLvPT 102 (569)
T KOG0346|consen 26 LDSRLLKAITKLGWEKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSAVILVPT 102 (569)
T ss_pred CCHHHHHHHHHhCcCCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcc--cccccceeEEEech
Confidence 344444544 5999999999999999999975 999999999999999999999988765432 23457789999999
Q ss_pred HHHHHHHHHHHHhhcccC--CcEEEEEeCCCccCHh---hhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 560 KALVAEVVGNLSNRLQMY--DVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~--gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
|+||+|++..+.++.... .+++.-++.+++.+.. ....++|+|+||.++ ..+.... ...+..+.++|+||||
T Consensus 103 kEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~--~~~~~~l~~LVvDEAD 180 (569)
T KOG0346|consen 103 KELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV--LEYLDSLSFLVVDEAD 180 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc--chhhhheeeEEechhh
Confidence 999999999998876544 3556666655544432 246899999999997 3333332 2577889999999999
Q ss_pred cccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce-EEecCCccc--ccceeEEEeecc
Q 000114 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRP--VPLSQQYIGIQV 709 (2158)
Q Consensus 634 ~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~-~~f~~~~rp--v~l~~~~~~~~~ 709 (2158)
++.. ++...+..+.. ..++..|.++||||+. +|+...-......++ ..+....-| ..+.+.++.+.+
T Consensus 181 LllsfGYeedlk~l~~-------~LPr~~Q~~LmSATl~--dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse 251 (569)
T KOG0346|consen 181 LLLSFGYEEDLKKLRS-------HLPRIYQCFLMSATLS--DDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSE 251 (569)
T ss_pred hhhhcccHHHHHHHHH-------hCCchhhheeehhhhh--hHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEecc
Confidence 9986 45444444433 3567889999999997 555554333222332 333333333 456666665553
Q ss_pred CChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchh
Q 000114 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2158)
Q Consensus 710 ~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (2158)
.. ++.. +|..+.-..-.+++||||||...|.++--.|...|+...
T Consensus 252 ~D---Kfll----lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksc---------------------------- 296 (569)
T KOG0346|consen 252 ED---KFLL----LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSC---------------------------- 296 (569)
T ss_pred ch---hHHH----HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhh----------------------------
Confidence 32 2221 222222222278899999999999999999988776543
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEech-----------------------------------hhhhcc
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA-----------------------------------TLAWGV 834 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~-----------------------------------tla~GV 834 (2158)
+++|.|+..-|-.+++.|..|..+++|||+ -.+|||
T Consensus 297 ---------iLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGI 367 (569)
T KOG0346|consen 297 ---------ILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGI 367 (569)
T ss_pred ---------hhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccc
Confidence 338999999999999999999999999998 157999
Q ss_pred CCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 835 dlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
|+..|..||| ||.|. +...|+||+||++|.+ +.|.++.++.+.+..
T Consensus 368 DF~~V~~VlN----FD~P~------t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 368 DFHHVSNVLN----FDFPE------TVTSYIHRVGRTARGN--NKGTALSFVSPKEEF 413 (569)
T ss_pred cchheeeeee----cCCCC------chHHHHHhccccccCC--CCCceEEEecchHHh
Confidence 9999999999 66554 6678999999999977 789999999886643
No 100
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-34 Score=333.45 Aligned_cols=335 Identities=19% Similarity=0.271 Sum_probs=261.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
..|++++|+|-+++|.++.+++ |+-.|-||||||.+|+.|++-+++..+.- ..-.++..||++||++||.|++.+.
T Consensus 241 ~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~eL---~~g~gPi~vilvPTrela~Qi~~ea 316 (731)
T KOG0339|consen 241 SEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPEL---KPGEGPIGVILVPTRELASQIFSEA 316 (731)
T ss_pred hhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhhh---cCCCCCeEEEEeccHHHHHHHHHHH
Confidence 3588999999999999999977 99999999999999999999998765421 1236789999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~ 645 (2158)
+++.+.+|+++..++|+.+...+. ..++.||||||+++ |++..+. ..+.++.++||||+++|.+ ++-+...+
T Consensus 317 Kkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKa---tn~~rvS~LV~DEadrmfdmGfe~qVrS 393 (731)
T KOG0339|consen 317 KKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKA---TNLSRVSYLVLDEADRMFDMGFEPQVRS 393 (731)
T ss_pred HHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhc---ccceeeeEEEEechhhhhccccHHHHHH
Confidence 998899999999999998876653 35899999999997 7777665 4678899999999999988 68777777
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcc--cccceeEEEeeccCChhHHHHHhhHHH
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR--PVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~r--pv~l~~~~~~~~~~~~~~~~~~l~~~~ 723 (2158)
|...+ .++.|.+++|||++ ..+....+..+..++.....+.- ...+.|.+..+.. ..++++ . +
T Consensus 394 I~~hi-------rpdrQtllFsaTf~--~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s--~~~Kl~---w-l 458 (731)
T KOG0339|consen 394 IKQHI-------RPDRQTLLFSATFK--KKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPS--EEKKLN---W-L 458 (731)
T ss_pred HHhhc-------CCcceEEEeeccch--HHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccC--cHHHHH---H-H
Confidence 76544 67899999999998 33444333333333333222211 1122232222221 222222 2 2
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCC
Q 000114 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2158)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHag 803 (2158)
...+.+....+.+||||.....+++++..|.-.++ .|+..||.
T Consensus 459 ~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~-------------------------------------~v~llhgd 501 (731)
T KOG0339|consen 459 LRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF-------------------------------------NVSLLHGD 501 (731)
T ss_pred HHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc-------------------------------------eeeeecCc
Confidence 23344555678999999999999999988876543 46677999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEE
Q 000114 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2158)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2158)
|.+.+|..++..|+.+...|||+|+++++|+|+|.+..||+ ||... ++..+.||+||+||.| ..|.++
T Consensus 502 kdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn----yD~ar------dIdththrigrtgRag--~kGvay 569 (731)
T KOG0339|consen 502 KDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN----YDFAR------DIDTHTHRIGRTGRAG--EKGVAY 569 (731)
T ss_pred hhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec----ccccc------hhHHHHHHhhhccccc--ccceee
Confidence 99999999999999999999999999999999999999999 66554 7778999999999998 669999
Q ss_pred EEcCCCcHHHHHH
Q 000114 884 IITGHSELRYYLS 896 (2158)
Q Consensus 884 il~~~~~~~~y~~ 896 (2158)
.++++.+..+.-.
T Consensus 570 TlvTeKDa~fAG~ 582 (731)
T KOG0339|consen 570 TLVTEKDAEFAGH 582 (731)
T ss_pred EEechhhHHHhhH
Confidence 9999888665433
No 101
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=7.3e-35 Score=329.74 Aligned_cols=335 Identities=20% Similarity=0.262 Sum_probs=254.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+|..+...+ +|+.+|||||.+-+|.++.+++ +|-.|-||||||++|.||++-........-......++..++|+|+
T Consensus 177 FP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPS 255 (610)
T KOG0341|consen 177 FPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPS 255 (610)
T ss_pred CCHHHHHHHHhcCCCCCCceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCc
Confidence 466555555 7999999999999999999987 9999999999999999998766544221111223367889999999
Q ss_pred HHHHHHHHHHHHhhcccC------CcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEe
Q 000114 560 KALVAEVVGNLSNRLQMY------DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLII 629 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~------gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIi 629 (2158)
|+||.|++.-+..++..+ .++...+.|+.+...+. ..+.+|+|+||+++ |++.++. ..+.-++++.+
T Consensus 256 RELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~---~sLd~CRyL~l 332 (610)
T KOG0341|consen 256 RELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI---MSLDACRYLTL 332 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh---ccHHHHHHhhh
Confidence 999999998877765433 35778888998876653 56899999999998 8888776 35677899999
Q ss_pred eccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeec
Q 000114 630 DEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ 708 (2158)
Q Consensus 630 DEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~ 708 (2158)
|||+++.| ++...+..|...+ ....|.+++|||+| ..+..|.+..+.+++.+-...--...+
T Consensus 333 DEADRmiDmGFEddir~iF~~F-------K~QRQTLLFSATMP--~KIQ~FAkSALVKPvtvNVGRAGAAsl-------- 395 (610)
T KOG0341|consen 333 DEADRMIDMGFEDDIRTIFSFF-------KGQRQTLLFSATMP--KKIQNFAKSALVKPVTVNVGRAGAASL-------- 395 (610)
T ss_pred hhHHHHhhccchhhHHHHHHHH-------hhhhheeeeecccc--HHHHHHHHhhcccceEEecccccccch--------
Confidence 99999999 6877777777655 34567899999999 567777766544433221111111111
Q ss_pred cCChhHHHHH---hhHHHHHHHHHHhC--CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhc
Q 000114 709 VKKPLQRFQL---MNDLCYEKVVAVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (2158)
Q Consensus 709 ~~~~~~~~~~---l~~~~~~~i~~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 783 (2158)
+..+.... -++++| +++.+. ..|+||||..+.++..+.++|.-+|.....
T Consensus 396 --dViQevEyVkqEaKiVy--lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEava--------------------- 450 (610)
T KOG0341|consen 396 --DVIQEVEYVKQEAKIVY--LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVA--------------------- 450 (610)
T ss_pred --hHHHHHHHHHhhhhhhh--HHHHhccCCCceEEEeccccChHHHHHHHHHccceeEE---------------------
Confidence 11111111 112222 334433 579999999999999999998877655433
Q ss_pred cCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHH
Q 000114 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (2158)
Q Consensus 784 ~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~ 863 (2158)
.|||-.+++|....+.|+.|+-+|||||++++.|+|+|++.+||| ||.|. .+..
T Consensus 451 ----------------IHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----yDMP~------eIEN 504 (610)
T KOG0341|consen 451 ----------------IHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----YDMPE------EIEN 504 (610)
T ss_pred ----------------eecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----CCChH------HHHH
Confidence 399999999999999999999999999999999999999999999 55554 5678
Q ss_pred HHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 864 IMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
|+||+||+||.| +.|.+..+.+...
T Consensus 505 YVHRIGRTGRsg--~~GiATTfINK~~ 529 (610)
T KOG0341|consen 505 YVHRIGRTGRSG--KTGIATTFINKNQ 529 (610)
T ss_pred HHHHhcccCCCC--Ccceeeeeecccc
Confidence 999999999988 7899998887754
No 102
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-34 Score=325.30 Aligned_cols=343 Identities=17% Similarity=0.257 Sum_probs=249.7
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh----cCCCceEEEEEcccHHHHH
Q 000114 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA----SETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~----~~~~~~~~v~IaP~raLa~ 1404 (2158)
+.++++-+ ||..|+|||+|+.|.++++.| ++.+|.||+|||++|++|-+-++... ....++.+|+++||++|+.
T Consensus 230 evmenIkK~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLal 308 (629)
T KOG0336|consen 230 EVMENIKKTGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELAL 308 (629)
T ss_pred HHHHHHHhccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHH
Confidence 45677766 899999999999999999777 99999999999999999988776543 1234568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccC-CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEK-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+--... ++.-. |.+..++.|+.+.. .+.++. ..||++||++|..+.-. ...++.++.++|+||||.+++.+
T Consensus 309 qie~e~~-kysyn-g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~--n~i~l~siTYlVlDEADrMLDMg- 383 (629)
T KOG0336|consen 309 QIEGEVK-KYSYN-GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD--NVINLASITYLVLDEADRMLDMG- 383 (629)
T ss_pred HHHhHHh-Hhhhc-CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc--CeeeeeeeEEEEecchhhhhccc-
Confidence 9987776 34332 55555555554433 344444 49999999999888654 45578999999999999999876
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcC
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
+|. .++.|.-...++.+.++.|||.|. .+.++.-.-..+..+++- +..-+.....-+.+-..+-....
T Consensus 384 --FEp---qIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vG--sLdL~a~~sVkQ~i~v~~d~~k~---- 452 (629)
T KOG0336|consen 384 --FEP---QIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVG--SLDLVAVKSVKQNIIVTTDSEKL---- 452 (629)
T ss_pred --ccH---HHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEec--ccceeeeeeeeeeEEecccHHHH----
Confidence 333 333443344678999999999987 556665443333323322 11111111111111111111111
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
...+......+...++||||.++..|..+..+|+- -+.....+|
T Consensus 453 -~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l-----------------------------------~gi~~q~lH 496 (629)
T KOG0336|consen 453 -EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCL-----------------------------------KGISSQSLH 496 (629)
T ss_pred -HHHHHHHHhcCCCceEEEEEechhhhhhccchhhh-----------------------------------cccchhhcc
Confidence 22333444447888999999999888776655521 122345689
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
|+-.+.||+..++.|++|.++|||||++++||+|+|++++|+ |+++|..+.+|+||+||+||+| +.|.
T Consensus 497 G~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~----------NyDFP~nIeeYVHRvGrtGRaG--r~G~ 564 (629)
T KOG0336|consen 497 GNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVY----------NYDFPRNIEEYVHRVGRTGRAG--RTGT 564 (629)
T ss_pred CChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceee----------ccCCCccHHHHHHHhcccccCC--CCcc
Confidence 999999999999999999999999999999999999999999 8899999999999999999998 7888
Q ss_pred EEEEecCChHHHHHHHh
Q 000114 1721 CVILCHAPRKEYYKKFL 1737 (2158)
Q Consensus 1721 ~iil~~~~~~~~~~k~l 1737 (2158)
++.+....+-...+.++
T Consensus 565 sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 565 SISFLTRNDWSMAEELI 581 (629)
T ss_pred eEEEEehhhHHHHHHHH
Confidence 88888777655544443
No 103
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.9e-33 Score=348.75 Aligned_cols=337 Identities=21% Similarity=0.306 Sum_probs=263.9
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1330 PLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1330 ~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
..+..+|. +..|+|-|.++|..++++ +++++..|||+||++||++|.+- ..| -+|+|+|..+|+.++.+.
T Consensus 7 ~~L~~~fG-y~~FR~gQ~evI~~~l~g-~d~lvvmPTGgGKSlCyQiPAll------~~G--~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 7 QVLKQVFG-YASFRPGQQEIIDALLSG-KDTLVVMPTGGGKSLCYQIPALL------LEG--LTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHHHHhC-ccccCCCHHHHHHHHHcC-CcEEEEccCCCCcchHhhhHHHh------cCC--CEEEECchHHHHHHHHHH
Confidence 34566665 999999999999999986 55999999999999999999983 244 799999999999999998
Q ss_pred HHHHhcCCCCcEEEEEcCCcchhh-----hcccC--CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMDL-----KLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~~-----~~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
++.. |+++..+.+..+.+. ..+.. .++++.+||++..-... ....-..+++++||||||+. .+|+
T Consensus 77 l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~--~~L~~~~i~l~vIDEAHCiS-qWGh 148 (590)
T COG0514 77 LEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL--ELLKRLPISLVAIDEAHCIS-QWGH 148 (590)
T ss_pred HHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH--HHHHhCCCceEEechHHHHh-hcCC
Confidence 8842 788988888766542 23333 48999999998542111 11114578999999999996 6679
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
.|+.-+.++..+...++ ++.+++||||..+ ..|+.+-|+.....+|.-+. .|| +.........
T Consensus 149 dFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf-dRp-------------Ni~~~v~~~~ 213 (590)
T COG0514 149 DFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSF-DRP-------------NLALKVVEKG 213 (590)
T ss_pred ccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC-CCc-------------hhhhhhhhcc
Confidence 99999999998888777 8899999999766 46888888887654443222 222 2211111111
Q ss_pred --hHHHHHHHH-hHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1561 --KPTFTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1561 --k~~~~~i~~-~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
...+..+.. .....++.||||.||+.|+.+|..|.. .+..++
T Consensus 214 ~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~-----------------------------------~g~~a~ 258 (590)
T COG0514 214 EPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRK-----------------------------------NGISAG 258 (590)
T ss_pred cHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHH-----------------------------------CCCceE
Confidence 011112221 114567799999999999999977732 245689
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
.|||||+.++|..+++.|..+.++|+|||.++++|||.|++++|| |++.|-++.+|.|.+|||||.| .
T Consensus 259 ~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi----------H~~lP~s~EsYyQE~GRAGRDG--~ 326 (590)
T COG0514 259 AYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI----------HYDLPGSIESYYQETGRAGRDG--L 326 (590)
T ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE----------EecCCCCHHHHHHHHhhccCCC--C
Confidence 999999999999999999999999999999999999999999999 8999999999999999999987 7
Q ss_pred ceEEEEEecCChHHHHHHHhhCCCccccc
Q 000114 1718 SGKCVILCHAPRKEYYKKFLYDAFPVESH 1746 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~k~l~~~~piES~ 1746 (2158)
.+.|++++...+......++....|.+..
T Consensus 327 ~a~aill~~~~D~~~~~~~i~~~~~~~~~ 355 (590)
T COG0514 327 PAEAILLYSPEDIRWQRYLIEQSKPDEEQ 355 (590)
T ss_pred cceEEEeeccccHHHHHHHHHhhcchHHH
Confidence 89999999999988888888877774443
No 104
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.5e-32 Score=370.06 Aligned_cols=310 Identities=19% Similarity=0.247 Sum_probs=227.1
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
+| +||++|.+|++.++.+ ..++|+|||||||||.+|+++++..+..+ .+++|++||++||.|+
T Consensus 449 ~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-----------~qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 449 PF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-----------KQVAVLVPTTLLAQQH 516 (926)
T ss_pred CC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-----------CeEEEEeCcHHHHHHH
Confidence 56 5999999999999875 24699999999999999999999887643 4899999999999999
Q ss_pred HHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCC
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~r 639 (2158)
++.|+++++.+++++..++|..+...+. ...++|+|+||.. +.+ ...++++++|||||+|+++.
T Consensus 517 ~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l---l~~----~v~f~~L~llVIDEahrfgv-- 587 (926)
T TIGR00580 517 FETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL---LQK----DVKFKDLGLLIIDEEQRFGV-- 587 (926)
T ss_pred HHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH---hhC----CCCcccCCEEEeecccccch--
Confidence 9999999998999999999977643321 1358999999963 322 13578899999999998632
Q ss_pred hhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHh
Q 000114 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2158)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l 719 (2158)
.....+ .....++++++||||+. ...+...+... ..............++...+.... . ..+
T Consensus 588 --~~~~~L-------~~~~~~~~vL~~SATpi-prtl~~~l~g~-~d~s~I~~~p~~R~~V~t~v~~~~---~----~~i 649 (926)
T TIGR00580 588 --KQKEKL-------KELRTSVDVLTLSATPI-PRTLHMSMSGI-RDLSIIATPPEDRLPVRTFVMEYD---P----ELV 649 (926)
T ss_pred --hHHHHH-------HhcCCCCCEEEEecCCC-HHHHHHHHhcC-CCcEEEecCCCCccceEEEEEecC---H----HHH
Confidence 222222 22356789999999953 34444333221 111111111111123333322111 1 111
Q ss_pred hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEE
Q 000114 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (2158)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~ 799 (2158)
...+.. +...+++++|||++++.+..++..|..... ...|+.
T Consensus 650 ~~~i~~---el~~g~qv~if~n~i~~~e~l~~~L~~~~p-----------------------------------~~~v~~ 691 (926)
T TIGR00580 650 REAIRR---ELLRGGQVFYVHNRIESIEKLATQLRELVP-----------------------------------EARIAI 691 (926)
T ss_pred HHHHHH---HHHcCCeEEEEECCcHHHHHHHHHHHHhCC-----------------------------------CCeEEE
Confidence 111111 223478999999999999999888875321 134788
Q ss_pred ecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCc
Q 000114 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (2158)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (2158)
+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||. ++++. ++..+|+||+||+||.| ..
T Consensus 692 lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~~-----~gls~l~Qr~GRvGR~g--~~ 760 (926)
T TIGR00580 692 AHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII----ERADK-----FGLAQLYQLRGRVGRSK--KK 760 (926)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhcCCCCCC--CC
Confidence 999999999999999999999999999999999999999999997 55543 36678999999999977 67
Q ss_pred cEEEEEcCCC
Q 000114 880 GEGIIITGHS 889 (2158)
Q Consensus 880 G~~iil~~~~ 889 (2158)
|.||+++...
T Consensus 761 g~aill~~~~ 770 (926)
T TIGR00580 761 AYAYLLYPHQ 770 (926)
T ss_pred eEEEEEECCc
Confidence 9999998764
No 105
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.7e-32 Score=364.24 Aligned_cols=415 Identities=15% Similarity=0.164 Sum_probs=285.2
Q ss_pred hcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh
Q 000114 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2158)
Q Consensus 1354 ~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~ 1433 (2158)
+.++.+++++||||||||+++.++++..... ++ ++++++|+|++|.|+++++.+.++...|..|+...+...
T Consensus 14 l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~--~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~--- 85 (819)
T TIGR01970 14 LAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GG--KIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN--- 85 (819)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CC--eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc---
Confidence 3457779999999999999999999977632 34 899999999999999999987887766777776554322
Q ss_pred hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccc-ccC-CCCChHHHHHHHHHHHHhhcCCCceEEEeccCC
Q 000114 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2158)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~-l~~-~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl 1511 (2158)
..-.+++|+|+||+.+..++.. ...++++++|||||+|. ..+ +. .+..++.+...++.+.|+|+||||+
T Consensus 86 ~~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl------~L~ll~~i~~~lr~dlqlIlmSATl 156 (819)
T TIGR01970 86 KVSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADL------GLALALDVQSSLREDLKILAMSATL 156 (819)
T ss_pred ccCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccch------HHHHHHHHHHhcCCCceEEEEeCCC
Confidence 2223569999999998766554 45789999999999994 332 22 1222333334456789999999999
Q ss_pred CChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhH-hcCCCEEEEecChHHHHHH
Q 000114 1512 ANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLT 1590 (2158)
Q Consensus 1512 ~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~-~~~~~~IVFv~sr~~~~~~ 1590 (2158)
.. ..+.++++... ++.. ..+..|+++++........ +. ......+...+ ...+++|||||++++++.+
T Consensus 157 ~~-~~l~~~l~~~~--vI~~--~gr~~pVe~~y~~~~~~~~---~~---~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l 225 (819)
T TIGR01970 157 DG-ERLSSLLPDAP--VVES--EGRSFPVEIRYLPLRGDQR---LE---DAVSRAVEHALASETGSILVFLPGQAEIRRV 225 (819)
T ss_pred CH-HHHHHHcCCCc--EEEe--cCcceeeeeEEeecchhhh---HH---HHHHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 65 45777776322 3322 2244455555433221111 10 00111122211 2367899999999999998
Q ss_pred HHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccc
Q 000114 1591 AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670 (2158)
Q Consensus 1591 a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la 1670 (2158)
+..|..... .+..|..+||+|+.++|..+++.|.+|..+|||||++++
T Consensus 226 ~~~L~~~~~--------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAE 273 (819)
T TIGR01970 226 QEQLAERLD--------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAE 273 (819)
T ss_pred HHHHHhhcC--------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHh
Confidence 876632110 134588999999999999999999999999999999999
Q ss_pred cccCCCccEEEEe-c---ceeecCCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCc
Q 000114 1671 WGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFP 1742 (2158)
Q Consensus 1671 ~Gvdlp~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~p 1742 (2158)
+|||+|++.+||- | ...||+..+. ..++|..+|.||+|||||. ..|.||.+++......+..+ ..|+.
T Consensus 274 rgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~~~l~~~-~~PEI 349 (819)
T TIGR01970 274 TSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQHQRLPAQ-DEPEI 349 (819)
T ss_pred hcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHHHhhhcC-CCcce
Confidence 9999999999993 2 2346665432 2467889999999999996 69999999987543333222 35666
Q ss_pred cccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCee
Q 000114 1743 VESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCII 1822 (2158)
Q Consensus 1743 iES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~ 1822 (2158)
..+.|...+.. +..-.+.+..+ ++| ...|.. +.++.++..|...|+|.
T Consensus 350 ~r~~L~~~~L~-----l~~~g~~~~~~-~~~----------l~~P~~----------------~~i~~a~~~L~~lgald 397 (819)
T TIGR01970 350 LQADLSGLALE-----LAQWGAKDPSD-LRW----------LDAPPS----------------VALAAARQLLQRLGALD 397 (819)
T ss_pred eccCcHHHHHH-----HHHcCCCChhh-CCC----------CCCcCH----------------HHHHHHHHHHHHCCCCC
Confidence 77777554442 22222222211 111 133432 57889999999999993
Q ss_pred EcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHh
Q 000114 1823 IEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLA 1869 (2158)
Q Consensus 1823 ~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils 1869 (2158)
++ -..|.+|+.+|.+++++.-.+++..+....+ ...++.|.|
T Consensus 398 --~~--~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~-~~~~~~iaa 439 (819)
T TIGR01970 398 --AQ--GRLTAHGKAMAALGCHPRLAAMLLSAHSTGL-AALACDLAA 439 (819)
T ss_pred --CC--CCcCHHHHHHHhcCCCHHHHHHHHHhhhcCC-HHHHHHHHH
Confidence 22 3568899999999999999999987644333 334444444
No 106
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-33 Score=323.19 Aligned_cols=344 Identities=19% Similarity=0.275 Sum_probs=265.8
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh---cCCCceEEEEEcccHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA---SETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~---~~~~~~~~v~IaP~raL 1402 (2158)
+...++..+.. .|..++|+|.++++..+.+.+ |+-.|-||||||.+|..|++-++... .++.+|..||++|||+|
T Consensus 230 fDkqLm~airk~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrel 308 (731)
T KOG0339|consen 230 FDKQLMTAIRKSEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTREL 308 (731)
T ss_pred chHHHHHHHhhhhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHH
Confidence 34556666665 489999999999999998777 99999999999999999999998764 23556799999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
|.|++.+.+ +|++..|++++.++|+.+.+.+ +-..+.||||||+++..+... ...++.+++++|+||++.+.+.
T Consensus 309 a~Qi~~eaK-kf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm--Katn~~rvS~LV~DEadrmfdm 385 (731)
T KOG0339|consen 309 ASQIFSEAK-KFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM--KATNLSRVSYLVLDEADRMFDM 385 (731)
T ss_pred HHHHHHHHH-HhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh--hcccceeeeEEEEechhhhhcc
Confidence 999999998 8988889999999998877632 225669999999999998876 4457899999999999999877
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHH-HhccCCCceEecCCCCcccccEEEEecccccchHHHHH
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGE-WIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~-wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~ 1557 (2158)
+ +....+.|..+..++.|.+++|||+.- .+.++. +|+.. ..+....-......+...+..+...
T Consensus 386 G------fe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dp-VrvVqg~vgean~dITQ~V~V~~s~------- 451 (731)
T KOG0339|consen 386 G------FEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDP-VRVVQGEVGEANEDITQTVSVCPSE------- 451 (731)
T ss_pred c------cHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCC-eeEEEeehhccccchhheeeeccCc-------
Confidence 7 667778888888899999999999965 333433 34332 2222111111111111111111111
Q ss_pred hcChHHHHHHHHh---HhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1558 AMTKPTFTAIVQH---AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1558 ~~~k~~~~~i~~~---~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
...+..+..+ ....+++|+||.-...++.++..|. .-++
T Consensus 452 ---~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lk-----------------------------------lk~~ 493 (731)
T KOG0339|consen 452 ---EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLK-----------------------------------LKGF 493 (731)
T ss_pred ---HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhc-----------------------------------cccc
Confidence 1112222222 2456789999999999998886662 1356
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
.|..+||.|.+.+|..++..|+.+...|||||+++++|+|+|....|| ++++--++..+.||+||+||.|
T Consensus 494 ~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVv----------nyD~ardIdththrigrtgRag 563 (731)
T KOG0339|consen 494 NVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV----------NYDFARDIDTHTHRIGRTGRAG 563 (731)
T ss_pred eeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceee----------cccccchhHHHHHHhhhccccc
Confidence 799999999999999999999999999999999999999999999888 6777778999999999999998
Q ss_pred CCCceEEEEEecCChHHHHHHHhh
Q 000114 1715 LDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
..|+++.++++.+.++--.+.+
T Consensus 564 --~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 564 --EKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred --ccceeeEEechhhHHHhhHHHH
Confidence 5699999999887765444433
No 107
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=8.6e-34 Score=338.64 Aligned_cols=330 Identities=18% Similarity=0.250 Sum_probs=253.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.+|..+++||..|||.++.+-+ +||.|..|+|||++|...+++.+... ...+.+++++|||+++.|+...+
T Consensus 43 n~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--------~~~~q~~Iv~PTREiaVQI~~tv 113 (980)
T KOG4284|consen 43 NAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--------SSHIQKVIVTPTREIAVQIKETV 113 (980)
T ss_pred hcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--------cCcceeEEEecchhhhhHHHHHH
Confidence 4899999999999999998877 99999999999999998888876543 24568999999999999999999
Q ss_pred Hhhccc-CCcEEEEEeCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc--CChhhHHH
Q 000114 571 SNRLQM-YDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLES 645 (2158)
Q Consensus 571 ~~~~~~-~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d--~rg~~le~ 645 (2158)
...... .|.++..+.|++..... ..+.++|+|+||+++..|..... ...++++|+|+||||.|.+ .+...+..
T Consensus 114 ~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~--~n~s~vrlfVLDEADkL~~t~sfq~~In~ 191 (980)
T KOG4284|consen 114 RKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGA--MNMSHVRLFVLDEADKLMDTESFQDDINI 191 (980)
T ss_pred HHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcC--CCccceeEEEeccHHhhhchhhHHHHHHH
Confidence 988764 48999999999876543 46789999999999855554432 5678899999999998877 36666665
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccc--cceeEEEeeccC-ChhHHHHHhhHH
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV--PLSQQYIGIQVK-KPLQRFQLMNDL 722 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv--~l~~~~~~~~~~-~~~~~~~~l~~~ 722 (2158)
|+.. ++...|++++|||-| +.+...|......+.++.-+..-++ .+.+.++..... ...+.+..+...
T Consensus 192 ii~s-------lP~~rQv~a~SATYp--~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~ 262 (980)
T KOG4284|consen 192 IINS-------LPQIRQVAAFSATYP--RNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQK 262 (980)
T ss_pred HHHh-------cchhheeeEEeccCc--hhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHH
Confidence 5543 467789999999988 3444444443344444433332232 344444333222 223333322222
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecC
Q 000114 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2158)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHa 802 (2158)
+..+....+-.|+||||+....|+.+|..|...|+.+ -+..|
T Consensus 263 -L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~-------------------------------------~~ISg 304 (980)
T KOG4284|consen 263 -LTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDV-------------------------------------TFISG 304 (980)
T ss_pred -HHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCe-------------------------------------EEecc
Confidence 2334455567799999999999999999998877554 34489
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEE
Q 000114 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2158)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2158)
.|++.+|..+++.++.-..+|||+|+..+||||-|.+++|||-+.|.| -..|+||+|||||- +..|.+
T Consensus 305 aM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d----------~eTY~HRIGRAgRF--G~~G~a 372 (980)
T KOG4284|consen 305 AMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPAD----------EETYFHRIGRAGRF--GAHGAA 372 (980)
T ss_pred ccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcc----------hHHHHHHhhhcccc--ccccee
Confidence 999999999999999999999999999999999999999999554444 44699999999995 488999
Q ss_pred EEEcCCCc
Q 000114 883 IIITGHSE 890 (2158)
Q Consensus 883 iil~~~~~ 890 (2158)
+.++...+
T Consensus 373 VT~~~~~~ 380 (980)
T KOG4284|consen 373 VTLLEDER 380 (980)
T ss_pred EEEeccch
Confidence 99887754
No 108
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.1e-31 Score=359.74 Aligned_cols=406 Identities=16% Similarity=0.185 Sum_probs=282.5
Q ss_pred HHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCc
Q 000114 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGET 1429 (2158)
Q Consensus 1350 ~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~ 1429 (2158)
+.++ .++.++++.||||||||+++.++++..... .+ ++++++|+|++|.|+++++.+.++...|..|+..++..
T Consensus 14 ~~~l-~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~--~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~ 87 (812)
T PRK11664 14 LTAL-KTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NG--KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHH-HhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CC--eEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc
Confidence 3344 346679999999999999999999865422 34 89999999999999999998788777788888776643
Q ss_pred chhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEecc
Q 000114 1430 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALST 1509 (2158)
Q Consensus 1430 ~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSA 1509 (2158)
... -...+|+|+||+++..++.. ...++++++|||||+|...-.. ...+..+..+.+.++.+.|+|+|||
T Consensus 88 ~~~---~~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER~l~~----Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 88 SKV---GPNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHERSLQA----DLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred ccc---CCCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCcccccc----chHHHHHHHHHHhCCccceEEEEec
Confidence 321 13458999999998776654 4568999999999999632111 1122223334444567899999999
Q ss_pred CCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhH-hcCCCEEEEecChHHHH
Q 000114 1510 SLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVR 1588 (2158)
Q Consensus 1510 Tl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~-~~~~~~IVFv~sr~~~~ 1588 (2158)
|++. ..+.++++... ++.. ..+..|++.++........ .. ......+...+ ...+.+|||||++++++
T Consensus 158 Tl~~-~~l~~~~~~~~--~I~~--~gr~~pV~~~y~~~~~~~~---~~---~~v~~~l~~~l~~~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 158 TLDN-DRLQQLLPDAP--VIVS--EGRSFPVERRYQPLPAHQR---FD---EAVARATAELLRQESGSLLLFLPGVGEIQ 226 (812)
T ss_pred CCCH-HHHHHhcCCCC--EEEe--cCccccceEEeccCchhhh---HH---HHHHHHHHHHHHhCCCCEEEEcCCHHHHH
Confidence 9964 46777775322 2222 2244455555433221111 10 01111122222 23688999999999999
Q ss_pred HHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCc
Q 000114 1589 LTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668 (2158)
Q Consensus 1589 ~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~ 1668 (2158)
.++..|..... .+..|..+||+|+..+|..+++.|.+|+.+|||||++
T Consensus 227 ~l~~~L~~~~~--------------------------------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnI 274 (812)
T PRK11664 227 RVQEQLASRVA--------------------------------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNI 274 (812)
T ss_pred HHHHHHHHhcc--------------------------------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecch
Confidence 99977742110 1234888999999999999999999999999999999
Q ss_pred cccccCCCccEEEEe-c---ceeecCCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhh--
Q 000114 1669 MCWGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLY-- 1738 (2158)
Q Consensus 1669 la~Gvdlp~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~-- 1738 (2158)
+++|||+|++.+||- | ...||+..+. ..++|..+|.||+|||||. ..|.||.+++... |..+..
T Consensus 275 AErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~---~~~l~~~~ 348 (812)
T PRK11664 275 AETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ---AERAAAQS 348 (812)
T ss_pred HHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH---HhhCccCC
Confidence 999999999999993 2 2347766543 2357889999999999996 5999999998743 333332
Q ss_pred CCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhC
Q 000114 1739 DAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEAS 1818 (2158)
Q Consensus 1739 ~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~ 1818 (2158)
.|+...+.|...+.+ +..-.+.+..+ ++| ...|+- +.++.++..|...
T Consensus 349 ~PEI~r~dL~~~~L~-----l~~~g~~~~~~-~~~----------ld~P~~----------------~~~~~A~~~L~~l 396 (812)
T PRK11664 349 EPEILHSDLSGLLLE-----LLQWGCHDPAQ-LSW----------LDQPPA----------------AALAAAKRLLQQL 396 (812)
T ss_pred CCceeccchHHHHHH-----HHHcCCCCHHh-CCC----------CCCCCH----------------HHHHHHHHHHHHC
Confidence 466677777554442 22222333322 111 133432 6789999999999
Q ss_pred CCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcC
Q 000114 1819 KCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLT 1856 (2158)
Q Consensus 1819 ~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~ 1856 (2158)
|+|. + +...|++|+.++.+++++.-.+++..+..
T Consensus 397 gald--~--~g~lT~~G~~m~~lp~~Prla~~ll~a~~ 430 (812)
T PRK11664 397 GALD--G--QGRLTARGRKMAALGNDPRLAAMLVAAKE 430 (812)
T ss_pred CCCC--C--CCCcCHHHHHHHhcCCchHHHHHHHHHHh
Confidence 9983 3 33568899999999999999999987544
No 109
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-33 Score=335.53 Aligned_cols=339 Identities=21% Similarity=0.267 Sum_probs=247.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||..|+|+|.+|+|.++...+ ++.|||||||||++|.+|++..+..... .....+.+++++.|||+||.|+++++
T Consensus 154 ~~F~~Pt~iq~~aipvfl~~r~-~lAcapTGsgKtlaf~~Pil~~L~~~~~---~~~~~gl~a~Il~ptreLa~Qi~re~ 229 (593)
T KOG0344|consen 154 LGFDEPTPIQKQAIPVFLEKRD-VLACAPTGSGKTLAFNLPILQHLKDLSQ---EKHKVGLRALILSPTRELAAQIYREM 229 (593)
T ss_pred CCCCCCCcccchhhhhhhcccc-eEEeccCCCcchhhhhhHHHHHHHHhhc---ccCccceEEEEecchHHHHHHHHHHH
Confidence 6899999999999998877654 9999999999999999999999987642 11235789999999999999999999
Q ss_pred Hhhc--ccCCcEEEEEeCCCccCHh----hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHH
Q 000114 571 SNRL--QMYDVKVRELSGDQTLTRQ----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2158)
Q Consensus 571 ~~~~--~~~gi~v~~l~Gd~~~~~~----~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le 644 (2158)
.++. ...+.++..+........+ ....++|+|+||-++-.+.........+..|.++|+||++++.+. ..+-
T Consensus 230 ~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~--~~f~ 307 (593)
T KOG0344|consen 230 RKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP--EFFV 307 (593)
T ss_pred HhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh--hhHH
Confidence 9987 5556666666655333222 235789999999986444444332346788999999999999764 1122
Q ss_pred HHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCccc---ccceeEEEeeccCChhHHHHHhhH
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRP---VPLSQQYIGIQVKKPLQRFQLMND 721 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rp---v~l~~~~~~~~~~~~~~~~~~l~~ 721 (2158)
.-++.+.... ..+++++-++|||++ ..+.+|........... .-..++ ..+.+..+++... . .++.++.+
T Consensus 308 ~Qla~I~sac--~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~v-ivg~~~sa~~~V~QelvF~gse-~-~K~lA~rq 380 (593)
T KOG0344|consen 308 EQLADIYSAC--QSPDIRVALFSATIS--VYVEEWAELIKSDLKRV-IVGLRNSANETVDQELVFCGSE-K-GKLLALRQ 380 (593)
T ss_pred HHHHHHHHHh--cCcchhhhhhhcccc--HHHHHHHHHhhccceeE-EEecchhHhhhhhhhheeeecc-h-hHHHHHHH
Confidence 2223332222 247889999999987 67888887653322111 111121 1122222211111 1 11222111
Q ss_pred HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEec
Q 000114 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (2158)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hH 801 (2158)
+....-..|++||+.+...|..+...|.. + -...|++.|
T Consensus 381 -----~v~~g~~PP~lIfVQs~eRak~L~~~L~~--~----------------------------------~~i~v~vIh 419 (593)
T KOG0344|consen 381 -----LVASGFKPPVLIFVQSKERAKQLFEELEI--Y----------------------------------DNINVDVIH 419 (593)
T ss_pred -----HHhccCCCCeEEEEecHHHHHHHHHHhhh--c----------------------------------cCcceeeEe
Confidence 12222367999999999999998887741 0 012477889
Q ss_pred CCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccE
Q 000114 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (2158)
Q Consensus 802 agl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (2158)
|..++.+|..+++.|+.|+++||+||++++||+|+.+++.||| ||.+. |...|+||+||+||+| ..|.
T Consensus 420 ~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~p~------s~~syihrIGRtgRag--~~g~ 487 (593)
T KOG0344|consen 420 GERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDFPQ------SDLSYIHRIGRTGRAG--RSGK 487 (593)
T ss_pred cccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe----cCCCc------hhHHHHHHhhccCCCC--CCcc
Confidence 9999999999999999999999999999999999999999999 88877 8889999999999998 7899
Q ss_pred EEEEcCCCcHHHHH
Q 000114 882 GIIITGHSELRYYL 895 (2158)
Q Consensus 882 ~iil~~~~~~~~y~ 895 (2158)
||.+++..+..+..
T Consensus 488 Aitfytd~d~~~ir 501 (593)
T KOG0344|consen 488 AITFYTDQDMPRIR 501 (593)
T ss_pred eEEEeccccchhhh
Confidence 99999997766554
No 110
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=352.60 Aligned_cols=364 Identities=21% Similarity=0.331 Sum_probs=274.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||..+++||.+|||+++.+++ +|..|-||||||++|+||+++++...+... ..+++.+|+++||++|+.|+.+.+
T Consensus 383 l~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~---~gdGPi~li~aPtrela~QI~r~~ 458 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLE---EGDGPIALILAPTRELAMQIHREV 458 (997)
T ss_pred hcCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChh---hCCCceEEEEcCCHHHHHHHHHHH
Confidence 3899999999999999999877 999999999999999999999887655432 125889999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~ 645 (2158)
+.+++.+|+++...+|+...+.+. ...+.|+||||+++ |.+.-..+....+.++-++|+||+|.|.+ .+-|..-.
T Consensus 459 ~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 459 RKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred HHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccch
Confidence 999999999999999999877654 35799999999996 88887777667777788999999999998 67777766
Q ss_pred HHHHHHHHHhhccccccEEEEccccCCh-HHHHHHHhccccCceEEecCCcc-cccceeEEEeeccCChhHHHHHhhHHH
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~-~dv~~~l~~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~~~~~~~~l~~~~ 723 (2158)
|+.++ .+..|.+.+|||+|.. +.++.-+...|.. ..+...-. .-.+.+.+..... ...++..+.+
T Consensus 539 Ii~nl-------rpdrQtvlfSatfpr~m~~la~~vl~~Pve--iiv~~~svV~k~V~q~v~V~~~--e~eKf~kL~e-- 605 (997)
T KOG0334|consen 539 ILQNL-------RPDRQTVLFSATFPRSMEALARKVLKKPVE--IIVGGRSVVCKEVTQVVRVCAI--ENEKFLKLLE-- 605 (997)
T ss_pred HHhhc-------chhhhhhhhhhhhhHHHHHHHHHhhcCCee--EEEccceeEeccceEEEEEecC--chHHHHHHHH--
Confidence 65544 6788999999999853 2333333322211 22221111 1122223322221 1122222222
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCC
Q 000114 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2158)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHag 803 (2158)
.+.+.....++||||.+...|..+.+.|...++.+..+ |||
T Consensus 606 --Ll~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~sl-------------------------------------HGg 646 (997)
T KOG0334|consen 606 --LLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSL-------------------------------------HGG 646 (997)
T ss_pred --HHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhh-------------------------------------cCC
Confidence 23333447899999999999999999999877665443 999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEE
Q 000114 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2158)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2158)
.++.+|..+++.|++|.+++||||+++++|+|++...+||+ ||.+. -..+|+||+||+||.| .+|.|+
T Consensus 647 v~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~pn------h~edyvhR~gRTgrag--rkg~Av 714 (997)
T KOG0334|consen 647 VDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDFPN------HYEDYVHRVGRTGRAG--RKGAAV 714 (997)
T ss_pred CchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE----cccch------hHHHHHHHhcccccCC--ccceeE
Confidence 99999999999999999999999999999999999999999 88776 4567999999999998 789999
Q ss_pred EEcCCCcHHHHHH----hhcCCCcccchhhHhhHHHHHHHHHhc
Q 000114 884 IITGHSELRYYLS----LMNQQLPIESQFVSKLADQLNAEIVLG 923 (2158)
Q Consensus 884 il~~~~~~~~y~~----ll~~~~pieS~l~~~l~d~lnaeI~~~ 923 (2158)
.|.++.+..+--. +.....|+. .++..+..-..++...|
T Consensus 715 tFi~p~q~~~a~dl~~al~~~~~~~P-~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 715 TFITPDQLKYAGDLCKALELSKQPVP-KLLQALSERFKAKQKAG 757 (997)
T ss_pred EEeChHHhhhHHHHHHHHHhccCCCc-hHHHHHHHHHHhhhhcc
Confidence 9999855443221 222222222 55555555555555544
No 111
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.4e-31 Score=356.92 Aligned_cols=314 Identities=17% Similarity=0.249 Sum_probs=229.2
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcC-----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1332 YEALYQGFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~l~~~-----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
+...|+ | .+||+|.+|++.++++ ..+++++||||||||.+|++|++..+.. +. +++|++||++||.|+
T Consensus 444 ~~~~~~-f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~--qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 444 FEDSFP-F-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GK--QVAVLVPTTLLAQQH 516 (926)
T ss_pred HHHhCC-C-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CC--eEEEEeCcHHHHHHH
Confidence 444443 6 5999999999999874 3579999999999999999999988765 34 899999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcchhh-----hccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1407 YRDWEIKFGQGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~ltG~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
++.+++.|+. .++++..++|..+... +.+. +.+|||+||.. +. ....+++++++||||+|+++..
T Consensus 517 ~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~---~~v~f~~L~llVIDEahrfgv~ 588 (926)
T TIGR00580 517 FETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQ---KDVKFKDLGLLIIDEEQRFGVK 588 (926)
T ss_pred HHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hh---CCCCcccCCEEEeecccccchh
Confidence 9999987775 4789999998765431 1222 46999999953 22 2345789999999999987421
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHH-hccCCCceEecCCCCcccccEEEEecccccchHHHHHh
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEW-IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~w-l~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~ 1558 (2158)
....+ .....++++++||||+.+ +.+... .+.....++...|..| .++...+....
T Consensus 589 -------~~~~L----~~~~~~~~vL~~SATpip-rtl~~~l~g~~d~s~I~~~p~~R-~~V~t~v~~~~---------- 645 (926)
T TIGR00580 589 -------QKEKL----KELRTSVDVLTLSATPIP-RTLHMSMSGIRDLSIIATPPEDR-LPVRTFVMEYD---------- 645 (926)
T ss_pred -------HHHHH----HhcCCCCCEEEEecCCCH-HHHHHHHhcCCCcEEEecCCCCc-cceEEEEEecC----------
Confidence 11222 233567899999999643 333332 3333333444444333 23333332211
Q ss_pred cChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEE
Q 000114 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2158)
Q Consensus 1559 ~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~ 1638 (2158)
.......+...+..+++++||||+++.+..++..|... .....|+.
T Consensus 646 -~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~---------------------------------~p~~~v~~ 691 (926)
T TIGR00580 646 -PELVREAIRRELLRGGQVFYVHNRIESIEKLATQLREL---------------------------------VPEARIAI 691 (926)
T ss_pred -HHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHh---------------------------------CCCCeEEE
Confidence 01223344455567899999999999998888665321 11346899
Q ss_pred ecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCc
Q 000114 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2158)
Q Consensus 1639 ~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~ 1718 (2158)
+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+||. ++.. .+...+|.||+||+||.| ..
T Consensus 692 lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~-----~~gls~l~Qr~GRvGR~g--~~ 760 (926)
T TIGR00580 692 AHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII----ERAD-----KFGLAQLYQLRGRVGRSK--KK 760 (926)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----ecCC-----CCCHHHHHHHhcCCCCCC--CC
Confidence 999999999999999999999999999999999999999888771 2211 235789999999999986 79
Q ss_pred eEEEEEecCC
Q 000114 1719 GKCVILCHAP 1728 (2158)
Q Consensus 1719 G~~iil~~~~ 1728 (2158)
|.|++++...
T Consensus 761 g~aill~~~~ 770 (926)
T TIGR00580 761 AYAYLLYPHQ 770 (926)
T ss_pred eEEEEEECCc
Confidence 9999998764
No 112
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.3e-32 Score=363.30 Aligned_cols=309 Identities=23% Similarity=0.307 Sum_probs=219.9
Q ss_pred CCCCCCHHHHHHHHHHHcCC-----CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
+| +||++|.+|++.+..+. .|+|++||||||||.+|++|++..+.. +.+++|++||++||.|+
T Consensus 259 ~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----------g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 259 PF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----------GYQAALMAPTEILAEQH 326 (681)
T ss_pred CC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----------CCeEEEEeccHHHHHHH
Confidence 35 69999999999988763 379999999999999999999988753 35899999999999999
Q ss_pred HHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCC
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~r 639 (2158)
++.+++++..+|+++..++|+.+...+. ...++|+|+||+.+. ....+.+++++||||+|+++...
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~v~~~~l~lvVIDE~Hrfg~~q 399 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-------DDVEFHNLGLVIIDEQHRFGVEQ 399 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-------ccchhcccceEEEechhhhhHHH
Confidence 9999999999999999999998754321 236899999998652 11346789999999999874321
Q ss_pred hhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHh
Q 000114 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2158)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l 719 (2158)
... +......+++++||||+. ...++.............-.+..| .++...+.. .....
T Consensus 400 ----r~~-------l~~~~~~~~iL~~SATp~-prtl~~~~~g~~~~s~i~~~p~~r-~~i~~~~~~--~~~~~------ 458 (681)
T PRK10917 400 ----RLA-------LREKGENPHVLVMTATPI-PRTLAMTAYGDLDVSVIDELPPGR-KPITTVVIP--DSRRD------ 458 (681)
T ss_pred ----HHH-------HHhcCCCCCEEEEeCCCC-HHHHHHHHcCCCceEEEecCCCCC-CCcEEEEeC--cccHH------
Confidence 111 112244688999999953 344433222111110110001111 123332221 11111
Q ss_pred hHHHHHHHHHH-hCCCeEEEEecChHHHHH--------HHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 720 NDLCYEKVVAV-AGKHQVLIFVHSRKETAK--------TARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 720 ~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~--------~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
.+++.+.+. ..+++++|||+..++.+. +++.|...
T Consensus 459 --~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~---------------------------------- 502 (681)
T PRK10917 459 --EVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA---------------------------------- 502 (681)
T ss_pred --HHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHH----------------------------------
Confidence 112222222 347799999997654432 22222211
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcc
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2158)
+....++.+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. ++...+.||+||
T Consensus 503 -~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~~r-----~gls~lhQ~~GR 572 (681)
T PRK10917 503 -FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGR 572 (681)
T ss_pred -CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE----eCCCC-----CCHHHHHHHhhc
Confidence 11256899999999999999999999999999999999999999999999998 77664 367889999999
Q ss_pred cCCCCCCCccEEEEEcCC
Q 000114 871 AGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~ 888 (2158)
+||.| ..|.|+++++.
T Consensus 573 vGR~g--~~g~~ill~~~ 588 (681)
T PRK10917 573 VGRGA--AQSYCVLLYKD 588 (681)
T ss_pred ccCCC--CceEEEEEECC
Confidence 99987 67999999964
No 113
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.7e-32 Score=365.53 Aligned_cols=438 Identities=16% Similarity=0.164 Sum_probs=274.4
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHH-HHHHhccCCCCCCCCCCcEEEEEcccH----HHHHHHHHHHHhhcccC
Q 000114 503 VYKSALSSADNILLCAPTGAGKTNVAVLTIL-QQLALNRNDDGSFNHSNYKIVYVAPMK----ALVAEVVGNLSNRLQMY 577 (2158)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il-~~l~~~~~~~~~~~~~~~kil~iaP~k----aLa~q~~~~~~~~~~~~ 577 (2158)
.|..++.+++.++|+|+||||||.. +|.+ .....+ ...+|++..|.+ +||.++...+... +
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g---------~~g~I~~TQPRRlAArsLA~RVA~El~~~---l 146 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRG---------VKGLIGHTQPRRLAARTVANRIAEELETE---L 146 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCC---------CCCceeeCCCcHHHHHHHHHHHHHHHhhh---h
Confidence 4445567778799999999999994 5632 222111 122677788865 5555555555432 2
Q ss_pred CcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc-ccc-CChhhHHHHHHHHHHHH
Q 000114 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQI 654 (2158)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~-l~d-~rg~~le~iv~r~~~~~ 654 (2158)
|-.|+.-+ ..+.+...+++|+|+||+.+ +.+.+ ...++++++|||||||. ..+ ++ +..++.++ .
T Consensus 147 G~~VGY~v---rf~~~~s~~t~I~v~TpG~LL~~l~~----d~~Ls~~~~IIIDEAHERsLn~Df---LLg~Lk~l---L 213 (1294)
T PRK11131 147 GGCVGYKV---RFNDQVSDNTMVKLMTDGILLAEIQQ----DRLLMQYDTIIIDEAHERSLNIDF---ILGYLKEL---L 213 (1294)
T ss_pred cceeceee---cCccccCCCCCEEEEChHHHHHHHhc----CCccccCcEEEecCccccccccch---HHHHHHHh---h
Confidence 33333222 22333345799999999986 33332 24589999999999993 433 22 11222222 1
Q ss_pred hhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHH--HhC
Q 000114 655 ETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA--VAG 732 (2158)
Q Consensus 655 ~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~--~~~ 732 (2158)
...++.|+|++|||++ .+.+++++.. .+++...+...| +...+..............+.. +...+.. ...
T Consensus 214 -~~rpdlKvILmSATid-~e~fs~~F~~---apvI~V~Gr~~p--Vei~y~p~~~~~~~~~~d~l~~-ll~~V~~l~~~~ 285 (1294)
T PRK11131 214 -PRRPDLKVIITSATID-PERFSRHFNN---APIIEVSGRTYP--VEVRYRPIVEEADDTERDQLQA-IFDAVDELGREG 285 (1294)
T ss_pred -hcCCCceEEEeeCCCC-HHHHHHHcCC---CCEEEEcCcccc--ceEEEeecccccchhhHHHHHH-HHHHHHHHhcCC
Confidence 1235789999999985 5677776653 334444443334 4444443322111001111111 1111211 223
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
.+++||||+++.++..++..|...+... ..|..+||+|+..+|..+
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~----------------------------------~~VlpLhg~Ls~~eQ~~V 331 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRH----------------------------------TEILPLYARLSNSEQNRV 331 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCc----------------------------------ceEeecccCCCHHHHHHH
Confidence 6789999999999999999997643211 125567999999999999
Q ss_pred HHHHhCCCceEEEechhhhhccCCCceEEEEecc----cccCCCCCc----cccCCHHHHHHhhcccCCCCCCCccEEEE
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (2158)
++. .|..+|||||+++++|||+|++++||+++ ..||+.+|. ..++|..+|.||+|||||. ..|.||.
T Consensus 332 f~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~r 406 (1294)
T PRK11131 332 FQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIR 406 (1294)
T ss_pred hcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEE
Confidence 886 57899999999999999999999999974 467877651 2467889999999999997 4799999
Q ss_pred EcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhH
Q 000114 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITL 964 (2158)
Q Consensus 885 l~~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l 964 (2158)
+++..+...... ++...-+...|...+..-..+|. . +..+| . .+
T Consensus 407 Lyte~d~~~~~~-----~~~PEIlR~~L~~viL~lk~lgl-~---di~~F-----------------~----------fl 450 (1294)
T PRK11131 407 LYSEDDFLSRPE-----FTDPEILRTNLASVILQMTALGL-G---DIAAF-----------------P----------FV 450 (1294)
T ss_pred eCCHHHHHhhhc-----ccCCccccCCHHHHHHHHHHcCC-C---Cccee-----------------e----------CC
Confidence 998765433221 11111111222222222111211 1 11111 0 01
Q ss_pred HHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcC
Q 000114 965 GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTV 1044 (2158)
Q Consensus 965 ~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~ 1044 (2158)
..+-.+.|..|+..|...|+|+.+..++...+|++|+.||.+|++|...+++..+....|. .+++.|.|+-+ ..+...
T Consensus 451 dpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~-~evl~IaA~Ls-v~dpf~ 528 (1294)
T PRK11131 451 EAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCV-REVMIITSALS-IQDPRE 528 (1294)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCH-HHHHHHHHHHc-CCCccc
Confidence 1111256889999999999998654334568999999999999999999999988776664 56666655433 356667
Q ss_pred ChhHHHHH
Q 000114 1045 RQDEKMEL 1052 (2158)
Q Consensus 1045 r~~e~~~l 1052 (2158)
|+.++.+-
T Consensus 529 ~p~~~~~~ 536 (1294)
T PRK11131 529 RPMDKQQA 536 (1294)
T ss_pred CCchhHHH
Confidence 77666543
No 114
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=4.8e-32 Score=360.92 Aligned_cols=312 Identities=23% Similarity=0.328 Sum_probs=219.9
Q ss_pred CCCCCCHHHHHHHHHHHcCC-----CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
+| +||++|.+|++.++.+- .|.|++||||||||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALMAPTEILAEQH 300 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEECCHHHHHHHH
Confidence 46 79999999999988752 268999999999999999999998764 34799999999999999
Q ss_pred HHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCC
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~r 639 (2158)
++.++++++.+|+++..++|+.....+. ...++|+|+||+.+. . ...+.++++|||||+|+++...
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~---~----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ---E----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh---c----cccccccceEEEechhhccHHH
Confidence 9999999998999999999998765422 235799999999642 1 1346789999999999875321
Q ss_pred hhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHh
Q 000114 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2158)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l 719 (2158)
... +.. . . .....+++++||||+.. ..++...............+.. ..++...+. .... +
T Consensus 374 r~~---l~~-~---~-~~~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~-r~~i~~~~~--~~~~---~---- 434 (630)
T TIGR00643 374 RKK---LRE-K---G-QGGFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPG-RKPITTVLI--KHDE---K---- 434 (630)
T ss_pred HHH---HHH-h---c-ccCCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCC-CCceEEEEe--Ccch---H----
Confidence 111 111 0 0 01126789999999543 3333322111111000000111 122332222 1111 1
Q ss_pred hHHHHHHHHHH-hCCCeEEEEecChHHHHHH--------HHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 720 NDLCYEKVVAV-AGKHQVLIFVHSRKETAKT--------ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 720 ~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~--------a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
..++..+.+. ..+++++|||+...+.+.+ ++.|.+.
T Consensus 435 -~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~---------------------------------- 479 (630)
T TIGR00643 435 -DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA---------------------------------- 479 (630)
T ss_pred -HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhh----------------------------------
Confidence 2233334433 3478999999987554332 2222110
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcc
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2158)
+....|+.+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. ++...|.||+||
T Consensus 480 -~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~r-----~gls~lhQ~~GR 549 (630)
T TIGR00643 480 -FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----EDAER-----FGLSQLHQLRGR 549 (630)
T ss_pred -CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE----eCCCc-----CCHHHHHHHhhh
Confidence 12356899999999999999999999999999999999999999999999998 66664 367899999999
Q ss_pred cCCCCCCCccEEEEEcCC
Q 000114 871 AGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~ 888 (2158)
|||.| ..|.|++++..
T Consensus 550 vGR~g--~~g~~il~~~~ 565 (630)
T TIGR00643 550 VGRGD--HQSYCLLVYKN 565 (630)
T ss_pred cccCC--CCcEEEEEECC
Confidence 99976 67999999843
No 115
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-32 Score=313.99 Aligned_cols=339 Identities=18% Similarity=0.250 Sum_probs=247.6
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc----CCCceEEEEEcccH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~----~~~~~~~v~IaP~r 1400 (2158)
+|....++++-. ||..||-||+.||+.++++.+ ++..|.||||||.+|++|+++.+.... ...++.+++++|||
T Consensus 25 gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTk 103 (569)
T KOG0346|consen 25 GLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTK 103 (569)
T ss_pred CCCHHHHHHHHHhCcCCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechH
Confidence 345566677766 899999999999999999775 999999999999999999999987642 12246899999999
Q ss_pred HHHHHHHHHHHHHhcCCC--CcEEEEEcCCcch---hhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccc
Q 000114 1401 ALAKERYRDWEIKFGQGL--GMRVVELTGETAM---DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475 (2158)
Q Consensus 1401 aLa~q~~~~~~~~f~~~~--g~~v~~ltG~~~~---~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~ 1475 (2158)
+||.|+|+.+. ++.... .+++.-++.+.+. ..-+...++|+|+||.++..++..- .-..+..++++|+||||+
T Consensus 104 EL~qQvy~vie-kL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~-~~~~~~~l~~LVvDEADL 181 (569)
T KOG0346|consen 104 ELAQQVYKVIE-KLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAG-VLEYLDSLSFLVVDEADL 181 (569)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhc-cchhhhheeeEEechhhh
Confidence 99999999988 444332 2455555544332 2335567899999999988776542 124678899999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCCcc--cccEEEEecccccch
Q 000114 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRP--VPLEIHIQGVDITNF 1552 (2158)
Q Consensus 1476 l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~rp--v~l~~~i~~~~~~~~ 1552 (2158)
+..-+ +-..|+.+.+.+|+..|.++||||+.+. ..+...+ .....+..+....-| -.+..+.......+.
T Consensus 182 llsfG------Yeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~-l~nPviLkl~e~el~~~dqL~Qy~v~cse~DK 254 (569)
T KOG0346|consen 182 LLSFG------YEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLF-LHNPVILKLTEGELPNPDQLTQYQVKCSEEDK 254 (569)
T ss_pred hhhcc------cHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHh-ccCCeEEEeccccCCCcccceEEEEEeccchh
Confidence 98655 4456777778889999999999999752 3333332 222233444333333 233333222221111
Q ss_pred HHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000114 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2158)
Q Consensus 1553 ~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2158)
.... | ++...---.+++||||||...|-.+-..| +-+
T Consensus 255 flll-------y-allKL~LI~gKsliFVNtIdr~YrLkLfL-----------------------------------eqF 291 (569)
T KOG0346|consen 255 FLLL-------Y-ALLKLRLIRGKSLIFVNTIDRCYRLKLFL-----------------------------------EQF 291 (569)
T ss_pred HHHH-------H-HHHHHHHhcCceEEEEechhhhHHHHHHH-----------------------------------HHh
Confidence 1111 1 11111123678999999999997665333 223
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHcCCceEEEecC-----------------------------------ccccccCCCc
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS-----------------------------------SMCWGVPLTA 1677 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~-----------------------------------~la~Gvdlp~ 1677 (2158)
+...+++.|.|+..-|--+++.|..|-.+++|||+ -.+||||+..
T Consensus 292 GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~ 371 (569)
T KOG0346|consen 292 GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHH 371 (569)
T ss_pred CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchh
Confidence 44457889999999999999999999999999998 1468999999
Q ss_pred cEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1678 HLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1678 ~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
+..|| |++.|-+...|+||+||++|++ +.|.++.|+.+.+
T Consensus 372 V~~Vl----------NFD~P~t~~sYIHRvGRTaRg~--n~GtalSfv~P~e 411 (569)
T KOG0346|consen 372 VSNVL----------NFDFPETVTSYIHRVGRTARGN--NKGTALSFVSPKE 411 (569)
T ss_pred eeeee----------ecCCCCchHHHHHhccccccCC--CCCceEEEecchH
Confidence 99999 8889999999999999999986 8899999998765
No 116
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=320.46 Aligned_cols=387 Identities=19% Similarity=0.283 Sum_probs=270.2
Q ss_pred EEEEEEeccCCCCCeEEEEEecccccC-CCcccccccccccCCCCCCCCCcCCCCCCCcccccChhHHHHHhc-CCCCCC
Q 000114 1266 SLNFTVPIYEPLPPQYFIRVVSDKWLG-SQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFN 1343 (2158)
Q Consensus 1266 ~~~f~vp~~~p~p~~y~v~~vSd~wlg-~e~~~~i~~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~ 1343 (2158)
-++++-|+...+.|.-+|+-+|..-.. ...+..|...+-..| || + ..+.--.++.+.++.+-. |+.+||
T Consensus 124 Gi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ip----PP--I---ksF~eMKFP~~~L~~lk~KGI~~PT 194 (610)
T KOG0341|consen 124 GITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIP----PP--I---KSFKEMKFPKPLLRGLKKKGIVHPT 194 (610)
T ss_pred CCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCC----Cc--h---hhhhhccCCHHHHHHHHhcCCCCCC
Confidence 356777777666666666666653211 112222322222222 11 1 111111234455666655 899999
Q ss_pred HHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh------cCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA------SETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1344 ~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~------~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|||.|-++.++.+++ .|-.|-||||||++|.||++-...+. ..+.+|-.++|+|+|+||.|++..+...+..+
T Consensus 195 pIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L 273 (610)
T KOG0341|consen 195 PIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAAL 273 (610)
T ss_pred ceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999777 99999999999999999987655443 12335689999999999999998877444322
Q ss_pred -----CCcEEEEEcCCcchh--hhcccCC-cEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHH
Q 000114 1418 -----LGMRVVELTGETAMD--LKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2158)
Q Consensus 1418 -----~g~~v~~ltG~~~~~--~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~is 1489 (2158)
..++...+.|+.+.. ...++.+ +|+|+||+++.+++.+ ....+.-.+++.+|||+++.+.+ +-.
T Consensus 274 ~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K--K~~sLd~CRyL~lDEADRmiDmG------FEd 345 (610)
T KOG0341|consen 274 QEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK--KIMSLDACRYLTLDEADRMIDMG------FED 345 (610)
T ss_pred HhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH--hhccHHHHHHhhhhhHHHHhhcc------chh
Confidence 246777888887754 3344444 9999999999988876 33457788999999999998876 444
Q ss_pred HHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHH---hcChHHHHH
Q 000114 1490 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ---AMTKPTFTA 1566 (2158)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~---~~~k~~~~~ 1566 (2158)
.++.+...+....|.+++|||+|.- +..|-. +.-+.|+.+.+.-.+...-+..+... .-++-.|
T Consensus 346 dir~iF~~FK~QRQTLLFSATMP~K--IQ~FAk---------SALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVy-- 412 (610)
T KOG0341|consen 346 DIRTIFSFFKGQRQTLLFSATMPKK--IQNFAK---------SALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVY-- 412 (610)
T ss_pred hHHHHHHHHhhhhheeeeeccccHH--HHHHHH---------hhcccceEEecccccccchhHHHHHHHHHhhhhhhh--
Confidence 5555555556678999999999852 222211 22335555555444433333322221 1222222
Q ss_pred HHHhH-hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCH
Q 000114 1567 IVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2158)
Q Consensus 1567 i~~~~-~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~ 1645 (2158)
++..+ ....|+||||..+..+..+..+|.- -+..+..+|||-.+
T Consensus 413 lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLl-----------------------------------KGVEavaIHGGKDQ 457 (610)
T KOG0341|consen 413 LLECLQKTSPPVLIFAEKKADVDDIHEYLLL-----------------------------------KGVEAVAIHGGKDQ 457 (610)
T ss_pred HHHHhccCCCceEEEeccccChHHHHHHHHH-----------------------------------ccceeEEeecCcch
Confidence 22222 3456799999999988888766621 12236789999999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
++|....+.|+.|+-+|||||++++.|+|+|++.+|| |++.|-.+..|+||+||+||.| +.|.+..|.
T Consensus 458 edR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVI----------NyDMP~eIENYVHRIGRTGRsg--~~GiATTfI 525 (610)
T KOG0341|consen 458 EDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVI----------NYDMPEEIENYVHRIGRTGRSG--KTGIATTFI 525 (610)
T ss_pred hHHHHHHHHHhcCCCceEEEecchhccCCCccchhhc----------cCCChHHHHHHHHHhcccCCCC--Ccceeeeee
Confidence 9999999999999999999999999999999999999 8888888999999999999987 889999888
Q ss_pred cCChH
Q 000114 1726 HAPRK 1730 (2158)
Q Consensus 1726 ~~~~~ 1730 (2158)
.....
T Consensus 526 NK~~~ 530 (610)
T KOG0341|consen 526 NKNQE 530 (610)
T ss_pred cccch
Confidence 77653
No 117
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.3e-31 Score=364.36 Aligned_cols=308 Identities=19% Similarity=0.258 Sum_probs=223.1
Q ss_pred CCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
.+|++|.+|++.++.+ ..++|+|||||+|||.+|+.+++..+.. +.+++|++||++||.|+++.
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----------g~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----------HKQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHH
Confidence 7999999999998876 2469999999999999999998877643 34899999999999999999
Q ss_pred HHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhh
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~ 642 (2158)
|.+++..+++++..++|..+...+. ....+|+|+||+. +. +. ..++++++|||||+|+++..
T Consensus 669 f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~l---L~-~~---v~~~~L~lLVIDEahrfG~~---- 737 (1147)
T PRK10689 669 FRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKL---LQ-SD---VKWKDLGLLIVDEEHRFGVR---- 737 (1147)
T ss_pred HHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHH---Hh-CC---CCHhhCCEEEEechhhcchh----
Confidence 9999988889999999887654432 1368999999973 22 21 34678999999999997321
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHH
Q 000114 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~ 722 (2158)
.... +...+.++++++||||+++ ..+...+.. .........+.....++...+..+ .... +...
T Consensus 738 ~~e~-------lk~l~~~~qvLl~SATpip-rtl~l~~~g-l~d~~~I~~~p~~r~~v~~~~~~~--~~~~-----~k~~ 801 (1147)
T PRK10689 738 HKER-------IKAMRADVDILTLTATPIP-RTLNMAMSG-MRDLSIIATPPARRLAVKTFVREY--DSLV-----VREA 801 (1147)
T ss_pred HHHH-------HHhcCCCCcEEEEcCCCCH-HHHHHHHhh-CCCcEEEecCCCCCCCceEEEEec--CcHH-----HHHH
Confidence 1111 1234678999999999643 222221111 112222222221222333222211 1100 1111
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecC
Q 000114 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2158)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHa 802 (2158)
.+.+...+++++||||+++.+..++..|..... ..+|+.+||
T Consensus 802 ---il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p-----------------------------------~~~v~~lHG 843 (1147)
T PRK10689 802 ---ILREILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAIGHG 843 (1147)
T ss_pred ---HHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCcEEEEeC
Confidence 122233478999999999999999988876421 235788899
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEE
Q 000114 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2158)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2158)
+|++.+|..++..|++|+++|||||+++++|||+|++++||. +++.. ++..+|+||+||+||.| ..|.|
T Consensus 844 ~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~ad~-----fglaq~~Qr~GRvGR~g--~~g~a 912 (1147)
T PRK10689 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH--HQAYA 912 (1147)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhhccCCCC--CceEE
Confidence 999999999999999999999999999999999999999985 33322 35678999999999977 67999
Q ss_pred EEEcCCC
Q 000114 883 IIITGHS 889 (2158)
Q Consensus 883 iil~~~~ 889 (2158)
++++..+
T Consensus 913 ~ll~~~~ 919 (1147)
T PRK10689 913 WLLTPHP 919 (1147)
T ss_pred EEEeCCC
Confidence 9998764
No 118
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=7.3e-31 Score=351.44 Aligned_cols=315 Identities=23% Similarity=0.336 Sum_probs=219.9
Q ss_pred CCCHHHHHHHHHHhcCC-----CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1341 HFNPIQTQVFTVLYNTD-----DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~-----~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
.||++|.+|++.+..+- .|++++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++.+.
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~--q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GY--QAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CC--eEEEEeccHHHHHHHHHHHHHHHh
Confidence 59999999999998742 479999999999999999999987754 33 899999999999999999996665
Q ss_pred CCCCcEEEEEcCCcchhhh-----ccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1416 QGLGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
. .|+++..++|+.+...+ .+. .++|+|+||+.+.. ...+++++++||||+|+++... .
T Consensus 336 ~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~v~~~~l~lvVIDE~Hrfg~~q-------r 400 (681)
T PRK10917 336 P-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-------DVEFHNLGLVIIDEQHRFGVEQ-------R 400 (681)
T ss_pred h-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-------cchhcccceEEEechhhhhHHH-------H
Confidence 4 58999999999875321 222 46999999987532 2346889999999999875221 1
Q ss_pred HHHHHHHhhcCCCceEEEeccCCCChHHHHHH-hccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHH
Q 000114 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEW-IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAI 1567 (2158)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~~dl~~w-l~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i 1567 (2158)
..+. ..+...++++||||+.. +.++.. .+........-.|..|. ++...+.... . ....+..+
T Consensus 401 ~~l~----~~~~~~~iL~~SATp~p-rtl~~~~~g~~~~s~i~~~p~~r~-~i~~~~~~~~--~--------~~~~~~~i 464 (681)
T PRK10917 401 LALR----EKGENPHVLVMTATPIP-RTLAMTAYGDLDVSVIDELPPGRK-PITTVVIPDS--R--------RDEVYERI 464 (681)
T ss_pred HHHH----hcCCCCCEEEEeCCCCH-HHHHHHHcCCCceEEEecCCCCCC-CcEEEEeCcc--c--------HHHHHHHH
Confidence 1111 12446889999999643 333222 22222122222222222 3333322211 1 12234455
Q ss_pred HHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh-cccEEEecCCCCHH
Q 000114 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL-RHGVGYLHEGLNKT 1646 (2158)
Q Consensus 1568 ~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l-~~gv~~~H~~l~~~ 1646 (2158)
...+..+++++|||++.+.++.+. + ....... +.|...+ ...|+.+||+|+..
T Consensus 465 ~~~~~~g~q~~v~~~~ie~s~~l~--~-------------------~~~~~~~-----~~L~~~~~~~~v~~lHG~m~~~ 518 (681)
T PRK10917 465 REEIAKGRQAYVVCPLIEESEKLD--L-------------------QSAEETY-----EELQEAFPELRVGLLHGRMKPA 518 (681)
T ss_pred HHHHHcCCcEEEEEcccccccchh--H-------------------HHHHHHH-----HHHHHHCCCCcEEEEeCCCCHH
Confidence 555577889999999765443210 0 0000001 1122222 35799999999999
Q ss_pred HHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEec
Q 000114 1647 DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2158)
Q Consensus 1647 dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~ 1726 (2158)
+|..+++.|++|+++|||||+++++|||+|++.+|| .|++. .+....+.||+||+||.| ..|.|+++++
T Consensus 519 eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VI----i~~~~-----r~gls~lhQ~~GRvGR~g--~~g~~ill~~ 587 (681)
T PRK10917 519 EKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMV----IENAE-----RFGLAQLHQLRGRVGRGA--AQSYCVLLYK 587 (681)
T ss_pred HHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEE----EeCCC-----CCCHHHHHHHhhcccCCC--CceEEEEEEC
Confidence 999999999999999999999999999999999988 33322 135788999999999986 7899999996
Q ss_pred CC
Q 000114 1727 AP 1728 (2158)
Q Consensus 1727 ~~ 1728 (2158)
.+
T Consensus 588 ~~ 589 (681)
T PRK10917 588 DP 589 (681)
T ss_pred CC
Confidence 44
No 119
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.3e-31 Score=359.21 Aligned_cols=441 Identities=17% Similarity=0.184 Sum_probs=282.0
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEE
Q 000114 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (2158)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v 581 (2158)
..|..++.+++.++|+||||||||......++.. +. + ...+|++..|.|--|..++.++.+.+ |..+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~---~~---~----~~~~I~~tQPRRlAA~svA~RvA~el---g~~l 139 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL---GR---G----SHGLIGHTQPRRLAARTVAQRIAEEL---GTPL 139 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc---CC---C----CCceEecCCccHHHHHHHHHHHHHHh---CCCc
Confidence 3445567777889999999999999643333321 11 1 12378899999999999998887754 4455
Q ss_pred EEEeCC-CccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccc-cccCChhhHHHHHHHHHHHHhhccc
Q 000114 582 RELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHDNRGPVLESIVARTVRQIETTKE 659 (2158)
Q Consensus 582 ~~l~Gd-~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~-l~d~rg~~le~iv~r~~~~~~~~~~ 659 (2158)
+...|- ...+.+...++.|+|+||+.+ .+.......++.+++|||||||. ..+ ...++..+..... ..+
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiL---Lr~l~~d~~L~~~~~IIIDEaHERsL~-----~D~LL~lLk~il~-~rp 210 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGIL---LAETQQDRFLSRYDTIIIDEAHERSLN-----IDFLLGYLKQLLP-RRP 210 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHH---HHHhhhCcccccCcEEEEcCcchhhcc-----chhHHHHHHHHHh-hCC
Confidence 555552 344444456789999999975 22222235688999999999993 332 2222222222222 245
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCC---hhHHHHHhhHHHHHHHHHHhCCCeE
Q 000114 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK---PLQRFQLMNDLCYEKVVAVAGKHQV 736 (2158)
Q Consensus 660 ~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~---~~~~~~~l~~~~~~~i~~~~~~~~v 736 (2158)
+.|+|+||||++ .+.+++++.. .+++...+...| +...+....... .......+...+.. +.. ...+.+
T Consensus 211 dLKlIlmSATld-~~~fa~~F~~---apvI~V~Gr~~P--Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~-l~~-~~~GdI 282 (1283)
T TIGR01967 211 DLKIIITSATID-PERFSRHFNN---APIIEVSGRTYP--VEVRYRPLVEEQEDDDLDQLEAILDAVDE-LFA-EGPGDI 282 (1283)
T ss_pred CCeEEEEeCCcC-HHHHHHHhcC---CCEEEECCCccc--ceeEEecccccccchhhhHHHHHHHHHHH-HHh-hCCCCE
Confidence 789999999985 5778888753 234444443334 444443322111 11122222222222 111 135799
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHH
Q 000114 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2158)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2158)
|||+++++++..++..|...+.. ...|..+||+|+.++|..+++.+
T Consensus 283 LVFLpg~~EI~~l~~~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 283 LIFLPGEREIRDAAEILRKRNLR----------------------------------HTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred EEeCCCHHHHHHHHHHHHhcCCC----------------------------------CcEEEeccCCCCHHHHHHHhCCC
Confidence 99999999999999998764321 11256779999999999996654
Q ss_pred hCCCceEEEechhhhhccCCCceEEEEecc----cccCCCCCc----cccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
+..+|||||+++++|||+|++++||+++ ..||+.+|. ..++|..+|.||+|||||.| .|.||.+++.
T Consensus 329 --~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte 403 (1283)
T TIGR01967 329 --SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSE 403 (1283)
T ss_pred --CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCH
Confidence 3479999999999999999999999975 457776652 25689999999999999986 7999999987
Q ss_pred CcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHH
Q 000114 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERR 968 (2158)
Q Consensus 889 ~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~ 968 (2158)
.+..... ....| | -+...|...+..-...| +.+ +..+. .+..+-
T Consensus 404 ~~~~~~~---~~~~P-E-IlR~~L~~viL~l~~lg-~~d--------------------i~~f~----------fldpP~ 447 (1283)
T TIGR01967 404 EDFNSRP---EFTDP-E-ILRTNLASVILQMLALR-LGD--------------------IAAFP----------FIEAPD 447 (1283)
T ss_pred HHHHhhh---hccCc-c-cccccHHHHHHHHHhcC-CCC--------------------ccccc----------CCCCCC
Confidence 6543322 11111 1 11112222222111111 111 11110 111112
Q ss_pred HHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhH
Q 000114 969 ADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE 1048 (2158)
Q Consensus 969 ~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e 1048 (2158)
.+.|..|+..|...|+|+.+. +...+|++|+.||.++++|...+++..+....|. .+++.|.|+-++ .++..|+.+
T Consensus 448 ~~~i~~A~~~L~~LGAld~~~--~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl-~e~l~IaA~Ls~-~dp~~~p~~ 523 (1283)
T TIGR01967 448 PRAIRDGFRLLEELGALDDDE--AEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCL-QEVLIIASALSI-QDPRERPME 523 (1283)
T ss_pred HHHHHHHHHHHHHCCCCCCCC--CCccccHHHHHHhhcCCChHHHHHHHHhhhcCCH-HHHHHHHHHHcC-CCcCCCcch
Confidence 356889999999999997442 3368999999999999999999999987766654 556666655443 455556555
Q ss_pred HHH
Q 000114 1049 KME 1051 (2158)
Q Consensus 1049 ~~~ 1051 (2158)
+.+
T Consensus 524 ~~~ 526 (1283)
T TIGR01967 524 KQQ 526 (1283)
T ss_pred hHH
Confidence 443
No 120
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.98 E-value=6.3e-32 Score=322.79 Aligned_cols=344 Identities=18% Similarity=0.229 Sum_probs=263.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|-.+.+..+-. +|..++|+|..||+.++.+-| +||.|..|+|||++|-.+++..+... ...+.++|++|||+++-|
T Consensus 32 l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--~~~~q~~Iv~PTREiaVQ 108 (980)
T KOG4284|consen 32 LWREVLLGLRRNAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--SSHIQKVIVTPTREIAVQ 108 (980)
T ss_pred HHHHHHHHHHhhcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--cCcceeEEEecchhhhhH
Confidence 33444555544 699999999999999998666 99999999999999999888877663 334589999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcch--hhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~--~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
+...+.+.-....|.++..+.|++.. +...+.+++|+|+||+++..+... ...++.+++|+|+||||.|.+..
T Consensus 109 I~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el--~~~n~s~vrlfVLDEADkL~~t~--- 183 (980)
T KOG4284|consen 109 IKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL--GAMNMSHVRLFVLDEADKLMDTE--- 183 (980)
T ss_pred HHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh--cCCCccceeEEEeccHHhhhchh---
Confidence 99999854334478999999998764 567888999999999999888765 45578999999999999887633
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCC-cccccEEEEecccccchHHHHHhcC
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGV-RPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~-rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
.+-..+..|...++...|++++|||-+. ...++.++.... ++.|.... .-.-+..++.....++.........
T Consensus 184 --sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~--lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlk 259 (980)
T KOG4284|consen 184 --SFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA--LVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLK 259 (980)
T ss_pred --hHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc--eeecccCCceeechhheeeeccCCcchHHHHHHH
Confidence 2556666777778999999999999876 345666765543 22222211 1112223333333222222211111
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
-..+..+... -+-.++||||+....|+.+|..|.. -+..+.++.
T Consensus 260 lq~L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L~s-----------------------------------sG~d~~~IS 303 (980)
T KOG4284|consen 260 LQKLTHVFKS-IPYVQALVFCDQISRAEPIATHLKS-----------------------------------SGLDVTFIS 303 (980)
T ss_pred HHHHHHHHhh-CchHHHHhhhhhhhhhhHHHHHhhc-----------------------------------cCCCeEEec
Confidence 2223333333 4566799999999999888866521 345588999
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
|.|++.+|..+++.++.-..+|||+|+..+||||-|.+.+|| |.+.|.+-..|+||+|||||-| ..|.
T Consensus 304 gaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVV----------NiD~p~d~eTY~HRIGRAgRFG--~~G~ 371 (980)
T KOG4284|consen 304 GAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVV----------NIDAPADEETYFHRIGRAGRFG--AHGA 371 (980)
T ss_pred cccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEE----------ecCCCcchHHHHHHhhhccccc--ccce
Confidence 999999999999999999999999999999999999999999 7888889999999999999976 8999
Q ss_pred EEEEecCChH
Q 000114 1721 CVILCHAPRK 1730 (2158)
Q Consensus 1721 ~iil~~~~~~ 1730 (2158)
++.+|...+.
T Consensus 372 aVT~~~~~~e 381 (980)
T KOG4284|consen 372 AVTLLEDERE 381 (980)
T ss_pred eEEEeccchh
Confidence 9999888754
No 121
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.98 E-value=1.9e-30 Score=345.57 Aligned_cols=320 Identities=21% Similarity=0.327 Sum_probs=220.1
Q ss_pred CCCCCCHHHHHHHHHHhcC-----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~-----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
+| .||++|.+|++.++.. ..|.+++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~--qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GY--QVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CC--cEEEECCHHHHHHHHHHHHHH
Confidence 36 7999999999999864 1368999999999999999999988754 34 899999999999999999996
Q ss_pred HhcCCCCcEEEEEcCCcchhhh-----ccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHH
Q 000114 1413 KFGQGLGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1413 ~f~~~~g~~v~~ltG~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e 1485 (2158)
.++. .|+++..++|+.+...+ .+. +++|||+||+.+.. ...+++++++||||+|+++... .
T Consensus 307 l~~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~fg~~q---r- 374 (630)
T TIGR00643 307 LLAP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-------KVEFKRLALVIIDEQHRFGVEQ---R- 374 (630)
T ss_pred Hhcc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-------cccccccceEEEechhhccHHH---H-
Confidence 6654 48999999998765421 222 45999999987532 2346889999999999875321 0
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHh-ccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHH
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI-GATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl-~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~ 1564 (2158)
..+...... ....++++||||+.. +.++..+ +..........|..| .++...+.... . ....+
T Consensus 375 ---~~l~~~~~~-~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r-~~i~~~~~~~~--~--------~~~~~ 438 (630)
T TIGR00643 375 ---KKLREKGQG-GFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGR-KPITTVLIKHD--E--------KDIVY 438 (630)
T ss_pred ---HHHHHhccc-CCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCC-CceEEEEeCcc--h--------HHHHH
Confidence 111111100 126789999999644 2232221 211111222122222 23333322111 1 02345
Q ss_pred HHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHH-HhcccEEEecCCC
Q 000114 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA-TLRHGVGYLHEGL 1643 (2158)
Q Consensus 1565 ~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~-~l~~gv~~~H~~l 1643 (2158)
..+...+..+++++|||++.+.++.+.. ....... ..+.+ ..+..|+.+||+|
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~---------------------~~a~~~~-----~~L~~~~~~~~v~~lHG~m 492 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDL---------------------KAAEALY-----ERLKKAFPKYNVGLLHGRM 492 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchH---------------------HHHHHHH-----HHHHhhCCCCcEEEEeCCC
Confidence 5555565778999999998765432200 0000001 11222 2345799999999
Q ss_pred CHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
+..+|..+++.|++|+++|||||+++++|||+|++++|| .|++. .++...|.||+|||||.| ..|.|++
T Consensus 493 ~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VI----i~~~~-----r~gls~lhQ~~GRvGR~g--~~g~~il 561 (630)
T TIGR00643 493 KSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMV----IEDAE-----RFGLSQLHQLRGRVGRGD--HQSYCLL 561 (630)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEE----EeCCC-----cCCHHHHHHHhhhcccCC--CCcEEEE
Confidence 999999999999999999999999999999999999888 23322 136889999999999986 7899999
Q ss_pred EecCC
Q 000114 1724 LCHAP 1728 (2158)
Q Consensus 1724 l~~~~ 1728 (2158)
++..+
T Consensus 562 ~~~~~ 566 (630)
T TIGR00643 562 VYKNP 566 (630)
T ss_pred EECCC
Confidence 99543
No 122
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.3e-31 Score=323.89 Aligned_cols=341 Identities=25% Similarity=0.342 Sum_probs=251.5
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC---CCceEEEEEcccHHHHHH
Q 000114 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE---TGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~---~~~~~~v~IaP~raLa~q 1405 (2158)
..++++-. +|..++|+|.+|++.+++. .+++.|||||||||++|.+|++.++..... ..+.+++|+.|+|+|+.|
T Consensus 146 ~ll~nl~~~~F~~Pt~iq~~aipvfl~~-r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Q 224 (593)
T KOG0344|consen 146 RLLENLQELGFDEPTPIQKQAIPVFLEK-RDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQ 224 (593)
T ss_pred HHHHhHhhCCCCCCCcccchhhhhhhcc-cceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHH
Confidence 33444433 7999999999999999884 459999999999999999999999987531 445799999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEEcCCcchhhh----cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1406 RYRDWEIKFG--QGLGMRVVELTGETAMDLK----LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1406 ~~~~~~~~f~--~~~g~~v~~ltG~~~~~~~----~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
++.++. ++. ...+.++..+........+ ....++|+|+||-++..++..-.....+.+|.++|+||+|++.+.
T Consensus 225 i~re~~-k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 225 IYREMR-KYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred HHHHHH-hcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh
Confidence 999998 566 4456666666655333321 233569999999998777765333347899999999999999866
Q ss_pred CCChHHHHHHHHHHHHhhc-CCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHH-
Q 000114 1480 GGPVLEVIVSRMRYIASQV-ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ- 1557 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~-~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~- 1557 (2158)
+.++.++..|.+.. .+++++-+||||.+ ..+.+|.........+..-..++...+. ..+...
T Consensus 304 -----~~f~~Qla~I~sac~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~~sa~~~---------V~QelvF 367 (593)
T KOG0344|consen 304 -----EFFVEQLADIYSACQSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLRNSANET---------VDQELVF 367 (593)
T ss_pred -----hhHHHHHHHHHHHhcCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEecchhHhhh---------hhhhhee
Confidence 33555555544432 36788889999975 5578887665543333222222211100 001000
Q ss_pred -hcChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1558 -AMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1558 -~~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
--.+..+.++.+.+ .-..|++||+-+.+.|..+...|- .+-+.
T Consensus 368 ~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~----------------------------------~~~~i 413 (593)
T KOG0344|consen 368 CGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELE----------------------------------IYDNI 413 (593)
T ss_pred eecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh----------------------------------hccCc
Confidence 00112222333322 234679999999999988886651 11234
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
.|.++||..++.+|..+++.|+.|++.|||||++++||+|+.++..|| |+++|-+..+|+||+||+||+|
T Consensus 414 ~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI----------nyD~p~s~~syihrIGRtgRag 483 (593)
T KOG0344|consen 414 NVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI----------NYDFPQSDLSYIHRIGRTGRAG 483 (593)
T ss_pred ceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE----------ecCCCchhHHHHHHhhccCCCC
Confidence 589999999999999999999999999999999999999999999999 7889999999999999999997
Q ss_pred CCCceEEEEEecCChHHHHH
Q 000114 1715 LDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~ 1734 (2158)
..|.|+.|+.+.+..+.+
T Consensus 484 --~~g~Aitfytd~d~~~ir 501 (593)
T KOG0344|consen 484 --RSGKAITFYTDQDMPRIR 501 (593)
T ss_pred --CCcceEEEeccccchhhh
Confidence 899999999987655544
No 123
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.98 E-value=1.7e-30 Score=357.29 Aligned_cols=308 Identities=17% Similarity=0.246 Sum_probs=224.6
Q ss_pred CCCCCHHHHHHHHHHhcC-----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~-----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
| .+|++|.+|++.++.+ ..+++++||||||||.+|+.+++..+.. +. +++|++||++||.|+++.|++.
T Consensus 599 ~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~--qvlvLvPT~eLA~Q~~~~f~~~ 672 (1147)
T PRK10689 599 F-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HK--QVAVLVPTTLLAQQHYDNFRDR 672 (1147)
T ss_pred C-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHh
Confidence 5 7999999999999874 2579999999999999999888776543 34 8999999999999999999987
Q ss_pred hcCCCCcEEEEEcCCcchhhh-----cc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHH
Q 000114 1414 FGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~ 1486 (2158)
|+.. ++++..++|..+...+ .+ ...+|||+||+.+ +. ...+++++++||||+|+++..
T Consensus 673 ~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~---~v~~~~L~lLVIDEahrfG~~------- 737 (1147)
T PRK10689 673 FANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS---DVKWKDLGLLIVDEEHRFGVR------- 737 (1147)
T ss_pred hccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC---CCCHhhCCEEEEechhhcchh-------
Confidence 7654 7888888887665322 12 2469999999742 21 234678999999999998421
Q ss_pred HHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHH
Q 000114 1487 IVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2158)
Q Consensus 1487 ~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~ 1565 (2158)
...++ ..++.+++++++|||+.+ ...++.. +.....++...|..| .++...+..+.. .....
T Consensus 738 ~~e~l----k~l~~~~qvLl~SATpiprtl~l~~~-gl~d~~~I~~~p~~r-~~v~~~~~~~~~-----------~~~k~ 800 (1147)
T PRK10689 738 HKERI----KAMRADVDILTLTATPIPRTLNMAMS-GMRDLSIIATPPARR-LAVKTFVREYDS-----------LVVRE 800 (1147)
T ss_pred HHHHH----HhcCCCCcEEEEcCCCCHHHHHHHHh-hCCCcEEEecCCCCC-CCceEEEEecCc-----------HHHHH
Confidence 12222 234568999999999744 3333222 222223344334333 233333322210 11223
Q ss_pred HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCH
Q 000114 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2158)
Q Consensus 1566 ~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~ 1645 (2158)
.+...+..+++++||||+++.++.++..|... ....+|..+||+|++
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~---------------------------------~p~~~v~~lHG~m~q 847 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAEL---------------------------------VPEARIAIGHGQMRE 847 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh---------------------------------CCCCcEEEEeCCCCH
Confidence 44444567889999999999998888666321 113568999999999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
.+|..++..|++|+++|||||+++++|+|+|++.+||.. ++ ..+.+.+|+||+||+||.| ..|.|++++
T Consensus 848 ~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~----~a-----d~fglaq~~Qr~GRvGR~g--~~g~a~ll~ 916 (1147)
T PRK10689 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE----RA-----DHFGLAQLHQLRGRVGRSH--HQAYAWLLT 916 (1147)
T ss_pred HHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe----cC-----CCCCHHHHHHHhhccCCCC--CceEEEEEe
Confidence 999999999999999999999999999999998888731 11 1246788999999999986 789999998
Q ss_pred cCC
Q 000114 1726 HAP 1728 (2158)
Q Consensus 1726 ~~~ 1728 (2158)
..+
T Consensus 917 ~~~ 919 (1147)
T PRK10689 917 PHP 919 (1147)
T ss_pred CCC
Confidence 765
No 124
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.98 E-value=7.1e-31 Score=329.39 Aligned_cols=327 Identities=21% Similarity=0.325 Sum_probs=247.5
Q ss_pred hHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 486 AQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 486 ~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
++..| |+..|++-|.++|..++.++ ++++..|||+||++||.+|.+-. . | -+|+|+|..+|...
T Consensus 9 L~~~f-Gy~~FR~gQ~evI~~~l~g~-d~lvvmPTGgGKSlCyQiPAll~--~-----G-------~TLVVSPLiSLM~D 72 (590)
T COG0514 9 LKQVF-GYASFRPGQQEIIDALLSGK-DTLVVMPTGGGKSLCYQIPALLL--E-----G-------LTLVVSPLISLMKD 72 (590)
T ss_pred HHHHh-CccccCCCHHHHHHHHHcCC-cEEEEccCCCCcchHhhhHHHhc--C-----C-------CEEEECchHHHHHH
Confidence 34444 79999999999999999884 59999999999999999998754 1 2 58999999999999
Q ss_pred HHHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHH--HHHHhccCCCccccccceEEeecccccc
Q 000114 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
+++.+... |+.+..+.+..+..... ....++++-+||++ ..+.+.. .-..+.+++|||||++.
T Consensus 73 QV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L----~~~~i~l~vIDEAHCiS 144 (590)
T COG0514 73 QVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELL----KRLPISLVAIDEAHCIS 144 (590)
T ss_pred HHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHH----HhCCCceEEechHHHHh
Confidence 99998875 78888888775544332 23578999999997 2222221 13458899999999996
Q ss_pred c---CChhhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEEecCCcccccceeEEEeeccCC
Q 000114 637 D---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK 711 (2158)
Q Consensus 637 d---~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~ 711 (2158)
. ++.|.+..+..-. .. -+++++++||||-+. ..|+..-|+.. ....+..+-.||. +...+. ...+
T Consensus 145 qWGhdFRP~Y~~lg~l~----~~-~~~~p~~AlTATA~~~v~~DI~~~L~l~--~~~~~~~sfdRpN-i~~~v~--~~~~ 214 (590)
T COG0514 145 QWGHDFRPDYRRLGRLR----AG-LPNPPVLALTATATPRVRDDIREQLGLQ--DANIFRGSFDRPN-LALKVV--EKGE 214 (590)
T ss_pred hcCCccCHhHHHHHHHH----hh-CCCCCEEEEeCCCChHHHHHHHHHhcCC--CcceEEecCCCch-hhhhhh--hccc
Confidence 5 4777776553322 22 348999999999764 45666667654 2233334444552 211111 1111
Q ss_pred hhHHHHHhhHHHHHHHHH--HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchh
Q 000114 712 PLQRFQLMNDLCYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2158)
Q Consensus 712 ~~~~~~~l~~~~~~~i~~--~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (2158)
...++. .+.+ ....++.||||.||+.++.+|..|...+.
T Consensus 215 ~~~q~~--------fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~------------------------------- 255 (590)
T COG0514 215 PSDQLA--------FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGI------------------------------- 255 (590)
T ss_pred HHHHHH--------HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCC-------------------------------
Confidence 111111 1221 23356789999999999999999987643
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhc
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2158)
.++.+||||+.++|..+++.|..+.++|+|||.++++|||-|+++.||| |+.|. |+.+|.|-+|
T Consensus 256 ------~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~lP~------s~EsYyQE~G 319 (590)
T COG0514 256 ------SAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH----YDLPG------SIESYYQETG 319 (590)
T ss_pred ------ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE----ecCCC------CHHHHHHHHh
Confidence 3577899999999999999999999999999999999999999999999 78776 8899999999
Q ss_pred ccCCCCCCCccEEEEEcCCCcHHHHHHhhcCCCc
Q 000114 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2158)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (2158)
||||.| ....|+++++..+......++....|
T Consensus 320 RAGRDG--~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 320 RAGRDG--LPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred hccCCC--CcceEEEeeccccHHHHHHHHHhhcc
Confidence 999998 67999999999998877777777666
No 125
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.2e-31 Score=339.50 Aligned_cols=375 Identities=22% Similarity=0.306 Sum_probs=269.1
Q ss_pred ccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc---CCCceEEEEEccc
Q 000114 1324 VTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPL 1399 (2158)
Q Consensus 1324 ~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---~~~~~~~v~IaP~ 1399 (2158)
...+....+..+-+ ||..++|||.||+|+++.+++ ||.+|.||||||++|.||+++|..... .+.+|.+++++||
T Consensus 369 q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPt 447 (997)
T KOG0334|consen 369 QCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPT 447 (997)
T ss_pred hCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCC
Confidence 34455556666644 688999999999999999777 999999999999999999999987642 2346799999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh--h-cccCCcEEEeCHHHHHHHHhhhhccc-cccceeEEEeccccc
Q 000114 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHL 1475 (2158)
Q Consensus 1400 raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~llIiDEaH~ 1475 (2158)
|+|+.|+.+.++ +|.+.+|++++...|+..... . .-+.+.|+||||+++.+++-....+. ++.++..+|+||||.
T Consensus 448 rela~QI~r~~~-kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDr 526 (997)
T KOG0334|consen 448 RELAMQIHREVR-KFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADR 526 (997)
T ss_pred HHHHHHHHHHHH-HHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhh
Confidence 999999999988 787779999999999876542 2 22346999999999987765543332 567777999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCC--cccccEEEEecccccch
Q 000114 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVDITNF 1552 (2158)
Q Consensus 1476 l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~--rpv~l~~~i~~~~~~~~ 1552 (2158)
+.+.+ ++.-+.+ |...+++..|.|++|||++.. +.++.-+-..+..+..-..+. ..+...+.+.......+
T Consensus 527 mfdmg---fePq~~~---Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf 600 (997)
T KOG0334|consen 527 MFDMG---FEPQITR---ILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKF 600 (997)
T ss_pred hheec---cCcccch---HHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHH
Confidence 98654 2222222 344456789999999999874 445544433332221111100 11222222222111111
Q ss_pred HHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000114 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2158)
Q Consensus 1553 ~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2158)
.. ...++.......++||||.+...|..+..+|.. .
T Consensus 601 ~k---------L~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~-----------------------------------a 636 (997)
T KOG0334|consen 601 LK---------LLELLGERYEDGKTIIFVDKQEKADALLRDLQK-----------------------------------A 636 (997)
T ss_pred HH---------HHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHh-----------------------------------c
Confidence 11 122222225689999999999999999887742 2
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
++.+..+|||.++.+|..+++.|++|.+.+||||+++++|+|++...+|| |+++|--..+|+||+||+||
T Consensus 637 g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvv----------nyd~pnh~edyvhR~gRTgr 706 (997)
T KOG0334|consen 637 GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVV----------NYDFPNHYEDYVHRVGRTGR 706 (997)
T ss_pred CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEE----------EcccchhHHHHHHHhccccc
Confidence 33455699999999999999999999999999999999999999999998 66677678899999999999
Q ss_pred CCCCCceEEEEEecCChHHH---HHHHhhCCCccccchhhHHHHHHHHHHhcC
Q 000114 1713 PLLDNSGKCVILCHAPRKEY---YKKFLYDAFPVESHLHHFLHDNFNAEIVAG 1762 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~~~~~---~~k~l~~~~piES~L~~~l~d~l~aeI~~~ 1762 (2158)
.| ..|.|+.|..+.+..+ +-+++....-.-+++...+..-+.++...+
T Consensus 707 ag--rkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 707 AG--RKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERFKAKQKAG 757 (997)
T ss_pred CC--ccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHHHhhhhcc
Confidence 98 7889999988844332 222222111112266667777777776655
No 126
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=349.93 Aligned_cols=348 Identities=21% Similarity=0.254 Sum_probs=264.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|+..|+++|.+|+..+.++ +|++|++|||||||.+|++||+..+.+... .++|||.||+|||+.|.++|
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~FllPIld~~l~~~~---------a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 66 AGIERLYSHQVDALRLIREG-RNVVVTTGTGSGKTESFLLPILDHLLRDPS---------ARALLLYPTNALANDQAERL 135 (851)
T ss_pred hccccccHHHHHHHHHHHCC-CCEEEECCCCCchhHHHHHHHHHHHhhCcC---------ccEEEEechhhhHhhHHHHH
Confidence 57788999999999998777 679999999999999999999999987643 28999999999999999999
Q ss_pred HhhcccCC--cEEEEEeCCCccCHhh---hccccEEEcchhHHHH-HHhcc-CCCccccccceEEeecccccccCChhhH
Q 000114 571 SNRLQMYD--VKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDI-ITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2158)
Q Consensus 571 ~~~~~~~g--i~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~-l~r~~-~~~~~l~~v~lIIiDEaH~l~d~rg~~l 643 (2158)
+++....+ +.+..++||+...+.. .+.++|++|||++|+. ++|.. .....+.++++||+||+|.+-.-+|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 99988776 8899999999888773 6789999999999976 45544 3345667899999999999988899999
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHH---HHhh
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF---QLMN 720 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~---~~l~ 720 (2158)
..++.|+++..+..+.+.++|+.|||+.|..+.+.-+....- ...++.+..|-.....+............ ....
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f--~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~ 293 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDF--EVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALA 293 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcc--eeeccCCCCCCCceEEEEeCCcchhhhhhcccchHH
Confidence 999999999999888999999999999998776655543211 11134444444443333322211000000 0111
Q ss_pred HHHHHHHHH--HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeE
Q 000114 721 DLCYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (2158)
Q Consensus 721 ~~~~~~i~~--~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~ 798 (2158)
. ...+.. ...+-++|+|+.+|+.++.++...+....... . .+..-+.
T Consensus 294 ~--~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~----------------------------~l~~~v~ 342 (851)
T COG1205 294 E--LATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-G----------------------------KLLDAVS 342 (851)
T ss_pred H--HHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc-h----------------------------hhhhhee
Confidence 1 011111 12367999999999999988755544322111 0 0123478
Q ss_pred EecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCC
Q 000114 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (2158)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (2158)
.|||||...+|..++..|+.|++.++++|++|+-|||+-++..||....|.. |..+++||+|||||.+ .
T Consensus 343 ~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~---------s~~~~~Q~~GRaGR~~--~ 411 (851)
T COG1205 343 TYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV---------SVLSFRQRAGRAGRRG--Q 411 (851)
T ss_pred eccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc---------hHHHHHHhhhhccCCC--C
Confidence 8999999999999999999999999999999999999999999998444432 6789999999999987 5
Q ss_pred ccEEEEEcCCCcHH
Q 000114 879 YGEGIIITGHSELR 892 (2158)
Q Consensus 879 ~G~~iil~~~~~~~ 892 (2158)
.+..+++...+-.+
T Consensus 412 ~~l~~~v~~~~~~d 425 (851)
T COG1205 412 ESLVLVVLRSDPLD 425 (851)
T ss_pred CceEEEEeCCCccc
Confidence 56666666654433
No 127
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.97 E-value=5.9e-30 Score=334.15 Aligned_cols=327 Identities=18% Similarity=0.186 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHH---------HHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAV---------LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~---------l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
.+|.++++.+++++ ++|++|+||||||.+.. ++.+..+..-.. .....++++++||++||.|+..
T Consensus 167 ~iQ~qil~~i~~gk-dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~-----~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 167 DVQLKIFEAWISRK-PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP-----NFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHhCC-CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc-----ccCCcEEEEECcHHHHHHHHHH
Confidence 48999999987765 59999999999998732 333333321100 1124589999999999999999
Q ss_pred HHHhhccc---CCcEEEEEeCCCccC--HhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhH
Q 000114 569 NLSNRLQM---YDVKVRELSGDQTLT--RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2158)
Q Consensus 569 ~~~~~~~~---~gi~v~~l~Gd~~~~--~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~l 643 (2158)
++.+.++. .|.++...+|+.... .......+|+|+|+.. ....++++++|||||||.+... +..+
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~-~Dll 310 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQI-GDII 310 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccc-hhHH
Confidence 99876654 367788899987632 1122357899999762 1134778999999999987542 3344
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccC-ChHHHHHHHhccccCceEEecCCcccccceeEEEeeccC--ChhHHHHHhh
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLP-NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK--KPLQRFQLMN 720 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlp-n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~--~~~~~~~~l~ 720 (2158)
..++.... ....|+++||||++ +.+.+..|++. ...+..... ...|+++.++..... ........-.
T Consensus 311 L~llk~~~------~~~rq~ILmSATl~~dv~~l~~~~~~---p~~I~I~gr-t~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 311 IAVARKHI------DKIRSLFLMTATLEDDRDRIKEFFPN---PAFVHIPGG-TLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred HHHHHHhh------hhcCEEEEEccCCcHhHHHHHHHhcC---CcEEEeCCC-cCCCeEEEEeecCcccccchhhhHHHH
Confidence 33333221 12248999999998 34556666642 222332221 124555554432211 0000000001
Q ss_pred HHHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeE
Q 000114 721 DLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (2158)
Q Consensus 721 ~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~ 798 (2158)
..+...+.... .++++||||++++++..+++.|..... ...+.
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-----------------------------------~~~v~ 425 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP-----------------------------------IYDFY 425 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC-----------------------------------CceEE
Confidence 11122222221 256899999999999999998876420 12356
Q ss_pred EecCCCCHHHHHHHHHHH-hCCCceEEEechhhhhccCCCceEEEEecccccCCC--CCccccCCHHHHHHhhcccCCCC
Q 000114 799 IHHAGMTRGDRQLVEDLF-GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE--KGAWTELSPLDIMQMLGRAGRPQ 875 (2158)
Q Consensus 799 ~hHagl~~~~R~~v~~~F-~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~--~g~~~~~s~~~~~Qr~GRAGR~g 875 (2158)
.+||+|++. +.+++.| ++|+.+|||||+++++|||+|++++||+++..+.|. .|...++|.++|.||+|||||.
T Consensus 426 ~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~- 502 (675)
T PHA02653 426 IIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV- 502 (675)
T ss_pred eccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-
Confidence 679999975 4555666 789999999999999999999999999987544442 3444568999999999999997
Q ss_pred CCCccEEEEEcCCCc
Q 000114 876 YDSYGEGIIITGHSE 890 (2158)
Q Consensus 876 ~d~~G~~iil~~~~~ 890 (2158)
..|.|+.+++..+
T Consensus 503 --~~G~c~rLyt~~~ 515 (675)
T PHA02653 503 --SPGTYVYFYDLDL 515 (675)
T ss_pred --CCCeEEEEECHHH
Confidence 4699999998765
No 128
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=4.5e-30 Score=335.09 Aligned_cols=321 Identities=17% Similarity=0.157 Sum_probs=211.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||+ |+|||.++++.++.+.++++++||||||||.++.++++.. .... ....++||++|||+||.|+++.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~-------~~~~rLv~~vPtReLa~Qi~~~~ 82 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGA-------KVPRRLVYVVNRRTVVDQVTEEA 82 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccc-------cccceEEEeCchHHHHHHHHHHH
Confidence 4887 9999999999999988779999999999999765444422 1110 11236677889999999999999
Q ss_pred HhhcccC-----------------------CcEEEEEeCCCccCHhhh---ccccEEEcchhHHHHHHhccC--------
Q 000114 571 SNRLQMY-----------------------DVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSG-------- 616 (2158)
Q Consensus 571 ~~~~~~~-----------------------gi~v~~l~Gd~~~~~~~~---~~~~IiV~TPekld~l~r~~~-------- 616 (2158)
.++.+.+ ++++..++|+.....+.. ..++|||+|++ .+.++..
T Consensus 83 ~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D---~i~sr~L~~gYg~~~ 159 (844)
T TIGR02621 83 EKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD---MIGSRLLFSGYGCGF 159 (844)
T ss_pred HHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH---HHcCCcccccccccc
Confidence 9877644 488999999988766542 46799999965 4443331
Q ss_pred -----CCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEE
Q 000114 617 -----DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFY 690 (2158)
Q Consensus 617 -----~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn-~~dv~~~l~~~~~~~~~~ 690 (2158)
....++++++||+|||| +...+...++.|+..+.+ .....+.|+++||||+|. ..+....+...+. .+.
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~r--p~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~--~i~ 234 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQR--PPDFLPLRVVELTATSRTDGPDRTTLLSAEDY--KHP 234 (844)
T ss_pred ccccchhhhhccceEEEEehhh-hccccHHHHHHHHHhccc--CcccccceEEEEecCCCccHHHHHHHHccCCc--eee
Confidence 11136889999999999 433566666666554310 011123689999999984 2223323322211 111
Q ss_pred ecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccC
Q 000114 691 FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKED 770 (2158)
Q Consensus 691 f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~ 770 (2158)
.........-..+++.. .. ..++..+...+.... ...++++||||||++.|..+++.|...+
T Consensus 235 V~~~~l~a~ki~q~v~v--~~-e~Kl~~lv~~L~~ll--~e~g~~vLVF~NTv~~Aq~L~~~L~~~g------------- 296 (844)
T TIGR02621 235 VLKKRLAAKKIVKLVPP--SD-EKFLSTMVKELNLLM--KDSGGAILVFCRTVKHVRKVFAKLPKEK------------- 296 (844)
T ss_pred cccccccccceEEEEec--Ch-HHHHHHHHHHHHHHH--hhCCCcEEEEECCHHHHHHHHHHHHhcC-------------
Confidence 11111111111122211 11 112211111111111 1236789999999999999999987532
Q ss_pred chhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH-----HHHHHHhC----CC-------ceEEEechhhhhcc
Q 000114 771 SVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ-----LVEDLFGD----GH-------VQVLVSTATLAWGV 834 (2158)
Q Consensus 771 ~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~-----~v~~~F~~----g~-------i~VLVaT~tla~GV 834 (2158)
+..+||+|++.+|. .+++.|++ |. .+|||||+++++||
T Consensus 297 --------------------------~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGL 350 (844)
T TIGR02621 297 --------------------------FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGV 350 (844)
T ss_pred --------------------------CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcc
Confidence 24569999999999 88999987 44 78999999999999
Q ss_pred CCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 835 dlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
|++. ++||+ +.. +..+|+||+||+||.|....+.++++
T Consensus 351 DId~-d~VI~----d~a--------P~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 351 NISA-DHLVC----DLA--------PFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred cCCc-ceEEE----CCC--------CHHHHHHHhcccCCCCCCCCceEEEE
Confidence 9998 66665 222 35689999999999885433434444
No 129
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.1e-29 Score=302.72 Aligned_cols=339 Identities=23% Similarity=0.352 Sum_probs=235.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
++.-+++.+|..++..++.+ |.||+.|||-|||.+|++.|...+... ++ |+|+++|||.|+.|.++.|
T Consensus 11 p~~ie~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~~---------~~-kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRWF---------GG-KVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred cccccHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHhc---------CC-eEEEecCCchHHHHHHHHH
Confidence 34557899999999998876 899999999999999999999988765 23 8999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHH--HHHHhccCCCccccccceEEeecccccccCChhhHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~i 646 (2158)
.+.++-..-.++.+||..+.+++ .+...+|+|+||+.+ |.+.. +..+.++.++||||||+-..+ .....
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G----rid~~dv~~lifDEAHRAvGn---yAYv~ 151 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG----RIDLDDVSLLIFDEAHRAVGN---YAYVF 151 (542)
T ss_pred HHHhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC----ccChHHceEEEechhhhccCc---chHHH
Confidence 99876555578999999988754 367899999999987 33332 256788999999999986433 23333
Q ss_pred HHHHHHHHhhccccccEEEEccccCC-hHHHH---HHHhccccCceEEec---CCcccc--cceeEEEeeccC-------
Q 000114 647 VARTVRQIETTKEHIRLVGLSATLPN-YEDVA---LFLRVNLEKGLFYFD---NSYRPV--PLSQQYIGIQVK------- 710 (2158)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATlpn-~~dv~---~~l~~~~~~~~~~f~---~~~rpv--~l~~~~~~~~~~------- 710 (2158)
+++.. -....+++++|||||..+ .+.+. +-|+.. .+.+.. .+.+|. .....++.+...
T Consensus 152 Va~~y---~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe---~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir 225 (542)
T COG1111 152 VAKEY---LRSAKNPLILGLTASPGSDLEKIQEVVENLGIE---KVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIR 225 (542)
T ss_pred HHHHH---HHhccCceEEEEecCCCCCHHHHHHHHHhCCcc---eEEEecCCCccHHHhhccceeEEEeccCcHHHHHHH
Confidence 33321 124668899999999764 22222 222221 111110 011110 000000000000
Q ss_pred -----------------------C---------------------hhHHHHHhh------------H-------------
Q 000114 711 -----------------------K---------------------PLQRFQLMN------------D------------- 721 (2158)
Q Consensus 711 -----------------------~---------------------~~~~~~~l~------------~------------- 721 (2158)
. ....+..|. +
T Consensus 226 ~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Y 305 (542)
T COG1111 226 DLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQY 305 (542)
T ss_pred HHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 0 000000000 0
Q ss_pred ----------------------------------------------HHHHHHHHHh---CCCeEEEEecChHHHHHHHHH
Q 000114 722 ----------------------------------------------LCYEKVVAVA---GKHQVLIFVHSRKETAKTARA 752 (2158)
Q Consensus 722 ----------------------------------------------~~~~~i~~~~---~~~~vLVFv~sr~~~~~~a~~ 752 (2158)
.+.+.+.+.. ++.++|||++-|..++.++..
T Consensus 306 l~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~ 385 (542)
T COG1111 306 LEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNF 385 (542)
T ss_pred HHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHH
Confidence 0011112222 245899999999999999999
Q ss_pred HHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhh
Q 000114 753 IRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832 (2158)
Q Consensus 753 L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~ 832 (2158)
|...+.... ..|+.. +-.-+..||++.++..+++.|++|..+|||||++.+.
T Consensus 386 L~~~~~~~~--~rFiGQ--------------------------a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEE 437 (542)
T COG1111 386 LKKIGIKAR--VRFIGQ--------------------------ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEE 437 (542)
T ss_pred HHhcCCcce--eEEeec--------------------------cccccccccCHHHHHHHHHHHhcCCceEEEEcccccc
Confidence 998776543 233321 1122358999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC--cHHHHH
Q 000114 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYL 895 (2158)
Q Consensus 833 GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--~~~~y~ 895 (2158)
|+|+|.+++||. |+|-. |..-++||.||+||. +.|.++++.+.+ +..||.
T Consensus 438 GLDIp~vDlVif----YEpvp------SeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~ 489 (542)
T COG1111 438 GLDIPEVDLVIF----YEPVP------SEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYY 489 (542)
T ss_pred cCCCCcccEEEE----ecCCc------HHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHH
Confidence 999999999998 88765 888999999999994 679999998887 444554
No 130
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.3e-31 Score=306.88 Aligned_cols=336 Identities=19% Similarity=0.269 Sum_probs=261.1
Q ss_pred Hhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 487 QPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 487 ~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
+.++ .||+.|+|||++.+|.++.+.+ ++..|-||||||.||++|+++.+..+. ..+.++++++|+++|+.|
T Consensus 34 raI~kkg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-------~~g~RalilsptreLa~q 105 (529)
T KOG0337|consen 34 RAIHKKGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLRALILSPTRELALQ 105 (529)
T ss_pred HHHHHhhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-------ccccceeeccCcHHHHHH
Confidence 3444 7999999999999999999877 999999999999999999999998764 246799999999999999
Q ss_pred HHHHHHhhcccCCcEEEEEeCCCccCHhhh---ccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChh
Q 000114 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGP 641 (2158)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~---~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~ 641 (2158)
..+.++...+..++++..++|+.+..++.. .+++||++||+++-.+.-... ..++.|.+||+||++.|.. ++.+
T Consensus 106 tlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~--l~l~sveyVVfdEadrlfemgfqe 183 (529)
T KOG0337|consen 106 TLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT--LTLSSVEYVVFDEADRLFEMGFQE 183 (529)
T ss_pred HHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee--ccccceeeeeehhhhHHHhhhhHH
Confidence 999999988888999998888877776642 479999999998643333322 4577899999999999987 5878
Q ss_pred hHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEe-cCCccc-ccceeEEEeeccCChhHHHHHh
Q 000114 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-DNSYRP-VPLSQQYIGIQVKKPLQRFQLM 719 (2158)
Q Consensus 642 ~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f-~~~~rp-v~l~~~~~~~~~~~~~~~~~~l 719 (2158)
.+..+++|+ +...|.+++|||+| .++..|.+.....+..+. +-.-+- ..++..+..+ .+..+ ...
T Consensus 184 ql~e~l~rl-------~~~~QTllfSatlp--~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~--~~a~K-~aa- 250 (529)
T KOG0337|consen 184 QLHEILSRL-------PESRQTLLFSATLP--RDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRV--RKAEK-EAA- 250 (529)
T ss_pred HHHHHHHhC-------CCcceEEEEeccCc--hhhHHHHHccCCCCceEEeehhhhcchhhhhheeee--ccHHH-HHH-
Confidence 888888876 55669999999999 577778776654443332 111111 1112222222 11111 111
Q ss_pred hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEE
Q 000114 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (2158)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~ 799 (2158)
+...+....+..+++|||.|+..++.+...|...+... ..
T Consensus 251 ---Ll~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~-------------------------------------s~ 290 (529)
T KOG0337|consen 251 ---LLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEG-------------------------------------SD 290 (529)
T ss_pred ---HHHHHhccccccceeEEecccchHHHHHHHHHhcCCCc-------------------------------------cc
Confidence 11222233335689999999999999988888766443 34
Q ss_pred ecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCc
Q 000114 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (2158)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (2158)
.++.|.+..|..-...|+.++..+||.|++++||+|+|-...||+++.|-++. -|+||+||+.|+| ..
T Consensus 291 iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~k----------lFvhRVgr~arag--rt 358 (529)
T KOG0337|consen 291 IYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDK----------LFVHRVGRVARAG--RT 358 (529)
T ss_pred cccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCc----------eEEEEecchhhcc--cc
Confidence 48999999999999999999999999999999999999999999966666655 4999999999988 78
Q ss_pred cEEEEEcCCCcHHHHHHh
Q 000114 880 GEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 880 G~~iil~~~~~~~~y~~l 897 (2158)
|.+|-++...+..|+..+
T Consensus 359 g~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 359 GRAYSLVASTDDPYLLDL 376 (529)
T ss_pred ceEEEEEecccchhhhhh
Confidence 999999999888777654
No 131
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=8.2e-30 Score=317.56 Aligned_cols=301 Identities=21% Similarity=0.233 Sum_probs=200.9
Q ss_pred HHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhccc-
Q 000114 499 VQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM- 576 (2158)
Q Consensus 499 iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~- 576 (2158)
+|.++++++++++. +++++||||||||.+|+++++.. ..+++|++|+++|+.|++++|.+.+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 59999999999875 68999999999999999998842 126899999999999999999998743
Q ss_pred ---CCcEEEEEeCCCccCHh-----------------------hhccccEEEcchhHHHHHHhccCC------Ccccccc
Q 000114 577 ---YDVKVRELSGDQTLTRQ-----------------------QIEETQIIVTTPEKWDIITRKSGD------RTYTQLV 624 (2158)
Q Consensus 577 ---~gi~v~~l~Gd~~~~~~-----------------------~~~~~~IiV~TPekld~l~r~~~~------~~~l~~v 624 (2158)
.++.+..++|+...+.+ ....+.|++|||+.|+.++|.+.. ..++..+
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 36778888887332200 013578999999999988876421 1246889
Q ss_pred ceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc--ccCceEEecC---------
Q 000114 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN--LEKGLFYFDN--------- 693 (2158)
Q Consensus 625 ~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~--~~~~~~~f~~--------- 693 (2158)
++|||||+|.+.......+...+..+ ..+.......|++++|||++. .+..++... ....+....+
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~ 223 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYM-QLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDNP 223 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHH-HHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCCh
Confidence 99999999998754433333222222 222222335799999999873 455555421 1111111111
Q ss_pred ---------Ccccc--cceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccc
Q 000114 694 ---------SYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762 (2158)
Q Consensus 694 ---------~~rpv--~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~ 762 (2158)
.+||+ ++...+.. ........+..+.+.+.+.+ +...++++||||+|++.++.++..|.+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~-~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~---- 297 (357)
T TIGR03158 224 ELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERF-RQLPGERGAIILDSLDEVNRLSDLLQQQGL---- 297 (357)
T ss_pred hhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHH-hccCCCeEEEEECCHHHHHHHHHHHhhhCC----
Confidence 24443 33333332 11111111221222211111 112467999999999999999999986431
Q ss_pred cccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEE
Q 000114 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842 (2158)
Q Consensus 763 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV 842 (2158)
...+..+||.+++.+|..+ ++.+|||||+++++|||+|.+. |
T Consensus 298 -------------------------------~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~-v 339 (357)
T TIGR03158 298 -------------------------------GDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDW-L 339 (357)
T ss_pred -------------------------------CceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCce-E
Confidence 1235678999999998654 4789999999999999999884 4
Q ss_pred EecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 843 I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
|. +|. +..+|+||+||+|
T Consensus 340 i~-----~p~-------~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 IF-----SAR-------DAAAFWQRLGRLG 357 (357)
T ss_pred EE-----CCC-------CHHHHhhhcccCC
Confidence 42 332 6779999999998
No 132
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2e-30 Score=299.78 Aligned_cols=342 Identities=18% Similarity=0.253 Sum_probs=259.5
Q ss_pred cccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1325 ~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
-+|+..+++.+|. ||..|+.||+.|+..+..|.+ +++.+++|+|||.+|.+++++.+... .....+++++|+|+|+
T Consensus 31 m~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~--~ke~qalilaPtreLa 107 (397)
T KOG0327|consen 31 MNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMS--VKETQALILAPTRELA 107 (397)
T ss_pred cCCCHHHHhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcc--hHHHHHHHhcchHHHH
Confidence 3566788999999 899999999999999988655 99999999999999999999887552 2233899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
.|..+... .++...+.+|..+.|+.... ...+. .++|+++||+++..++.+. ....+.++++|+||++.+...
T Consensus 108 ~qi~~v~~-~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~--~l~~~~iKmfvlDEaDEmLs~ 184 (397)
T KOG0327|consen 108 QQIQKVVR-ALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG--SLSTDGIKMFVLDEADEMLSR 184 (397)
T ss_pred HHHHHHHH-hhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc--cccccceeEEeecchHhhhcc
Confidence 99997766 67777889999888876654 22232 3599999999998888663 455677999999999988766
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHh
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~ 1558 (2158)
+ +...+..+..+++.+.|++++|||.+. ..++.+-+...+..+..-... ..++...+.+.....
T Consensus 185 g------fkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~---ltl~gikq~~i~v~k------ 249 (397)
T KOG0327|consen 185 G------FKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE---LTLEGIKQFYINVEK------ 249 (397)
T ss_pred c------hHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh---hhhhheeeeeeeccc------
Confidence 5 667777788888999999999999986 445554443332221110000 001100000000000
Q ss_pred cChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEE
Q 000114 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2158)
Q Consensus 1559 ~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~ 1638 (2158)
.+.+..+........+++|||||++.+..+...|. ..++.+..
T Consensus 250 --~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L~-----------------------------------~~~~~~s~ 292 (397)
T KOG0327|consen 250 --EEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKLR-----------------------------------AHGFTVSA 292 (397)
T ss_pred --cccccHHHHHHHhhhcceEEecchhhHHHHHHHHh-----------------------------------hCCceEEE
Confidence 00111222222356789999999999988775552 23456889
Q ss_pred ecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCc
Q 000114 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2158)
Q Consensus 1639 ~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~ 1718 (2158)
+|+.|.+.+|..+.+.|++|..+|||.|+.+++|+|+..+..|| ++..|.....|+||+||+||-| .+
T Consensus 293 ~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvi----------nydlP~~~~~yihR~gr~gr~g--rk 360 (397)
T KOG0327|consen 293 IHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVV----------NYDLPARKENYIHRIGRAGRFG--RK 360 (397)
T ss_pred eecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceee----------eeccccchhhhhhhcccccccC--CC
Confidence 99999999999999999999999999999999999999999999 7778888999999999999976 89
Q ss_pred eEEEEEecCChHHHHHHH
Q 000114 1719 GKCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1719 G~~iil~~~~~~~~~~k~ 1736 (2158)
|.++-++...+...+++.
T Consensus 361 g~~in~v~~~d~~~lk~i 378 (397)
T KOG0327|consen 361 GVAINFVTEEDVRDLKDI 378 (397)
T ss_pred ceeeeeehHhhHHHHHhH
Confidence 999999998876665544
No 133
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=7.4e-30 Score=342.20 Aligned_cols=359 Identities=20% Similarity=0.267 Sum_probs=264.0
Q ss_pred HHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHH
Q 000114 1332 YEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1332 ~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
..++.. |+..|.++|.+|+..+.++ +||+|+.|||||||.||++||+.++.+ .+.. +++||.||+||++++.+++
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~FllPIld~~l~-~~~a--~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREG-RNVVVTTGTGSGKTESFLLPILDHLLR-DPSA--RALLLYPTNALANDQAERL 135 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCC-CCEEEECCCCCchhHHHHHHHHHHHhh-CcCc--cEEEEechhhhHhhHHHHH
Confidence 344444 6777999999999999885 679999999999999999999999998 3444 8999999999999999999
Q ss_pred HHHhcCCC-CcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHH-Hhhhhc-cccccceeEEEecccccccCCCCChH
Q 000114 1411 EIKFGQGL-GMRVVELTGETAMDLK---LLEKGQIIISTPEKWDAL-SRRWKQ-RKYVQQVSLFIIDELHLIGGQGGPVL 1484 (2158)
Q Consensus 1411 ~~~f~~~~-g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l-~r~~~~-~~~l~~v~llIiDEaH~l~~~~g~~~ 1484 (2158)
++...... ++++..++||+....+ .-+.++|+++||.+|..+ ++.+.. ...++++++||+||+|..-+-.|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 95555442 4889999999988765 356779999999999874 443222 22467799999999999988889999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHH--HhcChH
Q 000114 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM--QAMTKP 1562 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~--~~~~k~ 1562 (2158)
-.++.|++.+....+.+.++|+.|||++|..+++.-+.......- +..+..|-.....+...+........ .+....
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~ 294 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSALAE 294 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchHHH
Confidence 999999999999888999999999999998777665544433331 22233333333333222211111111 001111
Q ss_pred HHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCC
Q 000114 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2158)
Q Consensus 1563 ~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~ 1642 (2158)
.-..+...+..+-++|+|+.++++++.+...........+ ..+...+..|||+
T Consensus 295 ~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~---------------------------~~l~~~v~~~~~~ 347 (851)
T COG1205 295 LATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG---------------------------GKLLDAVSTYRAG 347 (851)
T ss_pred HHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc---------------------------hhhhhheeecccc
Confidence 1122223346788999999999999888643322111110 1133458999999
Q ss_pred CCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCC-CHHHHHHhhccCCCCCCCCceEE
Q 000114 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDY-PVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1643 l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~-s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
|...+|.+++..|+.|++.++++|+++.-|+|+-++..|| ....|. +..+++||+|||||.+ ..+..
T Consensus 348 ~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi----------~~g~P~~s~~~~~Q~~GRaGR~~--~~~l~ 415 (851)
T COG1205 348 LHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVI----------AYGYPGVSVLSFRQRAGRAGRRG--QESLV 415 (851)
T ss_pred CCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHh----------hcCCCCchHHHHHHhhhhccCCC--CCceE
Confidence 9999999999999999999999999999999999999998 445666 8999999999999987 44554
Q ss_pred EEEecC-ChHHHHH
Q 000114 1722 VILCHA-PRKEYYK 1734 (2158)
Q Consensus 1722 iil~~~-~~~~~~~ 1734 (2158)
++.... +-..||.
T Consensus 416 ~~v~~~~~~d~yy~ 429 (851)
T COG1205 416 LVVLRSDPLDSYYL 429 (851)
T ss_pred EEEeCCCccchhhh
Confidence 444443 2334544
No 134
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.9e-30 Score=300.05 Aligned_cols=331 Identities=22% Similarity=0.378 Sum_probs=247.5
Q ss_pred hHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 486 AQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 486 ~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
++.+| -||++|+.||+.|+..+..|.+ +++.|++|+|||.+|.+++++.+... .....+++++|+++|++
T Consensus 38 Lrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~--------~ke~qalilaPtreLa~ 108 (397)
T KOG0327|consen 38 LRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMS--------VKETQALILAPTRELAQ 108 (397)
T ss_pred HhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcc--------hHHHHHHHhcchHHHHH
Confidence 44555 6999999999999999988855 99999999999999999999987432 23457999999999999
Q ss_pred HHHHHHHhhcccCCcEEEEEeCCCccCHh--hh--ccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-C
Q 000114 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI--EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~--~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
|+.......+...+.+|..+.|+.....+ .+ ..++|+|+||++. +.+.+.. .....++++|+||++.+.. +
T Consensus 109 qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~---l~~~~iKmfvlDEaDEmLs~g 185 (397)
T KOG0327|consen 109 QIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGS---LSTDGIKMFVLDEADEMLSRG 185 (397)
T ss_pred HHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccc---ccccceeEEeecchHhhhccc
Confidence 99999888888889999999998776532 22 3579999999997 5555542 4566799999999998776 6
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec--CCcccccceeEEEeeccCChhHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD--NSYRPVPLSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~--~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2158)
+...++.|... .+.++|++++|||.|. ++...-...+..++.... ....---..+.++.+.... ++
T Consensus 186 fkdqI~~if~~-------lp~~vQv~l~SAT~p~--~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~---k~ 253 (397)
T KOG0327|consen 186 FKDQIYDIFQE-------LPSDVQVVLLSATMPS--DVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE---KL 253 (397)
T ss_pred hHHHHHHHHHH-------cCcchhheeecccCcH--HHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc---cc
Confidence 76666666554 4788999999999984 333222222122111111 1111111222233222221 33
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
..+..+ |+ ...+.+|||||++.+..+...|...+..
T Consensus 254 ~~l~dl-~~------~~~q~~if~nt~r~v~~l~~~L~~~~~~------------------------------------- 289 (397)
T KOG0327|consen 254 DTLCDL-YR------RVTQAVIFCNTRRKVDNLTDKLRAHGFT------------------------------------- 289 (397)
T ss_pred cHHHHH-HH------hhhcceEEecchhhHHHHHHHHhhCCce-------------------------------------
Confidence 332222 22 3568999999999999999988654432
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
+...||.|.+.+|..+.+.|+.|..+|||+|+.+|+|+|+-.+.+||+ |+.|. ...+|+||+||+||-|
T Consensus 290 ~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin----ydlP~------~~~~yihR~gr~gr~g- 358 (397)
T KOG0327|consen 290 VSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDLPA------RKENYIHRIGRAGRFG- 358 (397)
T ss_pred EEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee----ecccc------chhhhhhhcccccccC-
Confidence 455699999999999999999999999999999999999999999999 55444 4567999999999955
Q ss_pred CCccEEEEEcCCCcHHHHHH
Q 000114 877 DSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 877 d~~G~~iil~~~~~~~~y~~ 896 (2158)
.+|.++-+++..+...+.+
T Consensus 359 -rkg~~in~v~~~d~~~lk~ 377 (397)
T KOG0327|consen 359 -RKGVAINFVTEEDVRDLKD 377 (397)
T ss_pred -CCceeeeeehHhhHHHHHh
Confidence 8899999999887666554
No 135
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=1.4e-29 Score=315.42 Aligned_cols=301 Identities=19% Similarity=0.256 Sum_probs=204.5
Q ss_pred HHHHHHHHHhcCCC-cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC---CCc
Q 000114 1345 IQTQVFTVLYNTDD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG---LGM 1420 (2158)
Q Consensus 1345 iQ~q~~~~l~~~~~-nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~---~g~ 1420 (2158)
+|+++|+++++++. +++++||||||||.||++|++. ... +++|++|+++|+.|++++|++.+... .+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~------~~~--~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH------GEN--DTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH------cCC--CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 49999999999875 6899999999999999999983 133 78999999999999999999777432 367
Q ss_pred EEEEEcCCcchhhhc-----------------------ccCCcEEEeCHHHHHHHHhhhhccc------cccceeEEEec
Q 000114 1421 RVVELTGETAMDLKL-----------------------LEKGQIIISTPEKWDALSRRWKQRK------YVQQVSLFIID 1471 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~-----------------------l~~~~IIV~TPe~l~~l~r~~~~~~------~l~~v~llIiD 1471 (2158)
.+..++|++..+.+. ...++|+++||+.|..++++|.... .+.+++++|+|
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 788889875443111 2356899999999999888763322 36899999999
Q ss_pred ccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHH--hccCCCce----EecCC----------
Q 000114 1472 ELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEW--IGATSHGL----FNFPP---------- 1533 (2158)
Q Consensus 1472 EaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~w--l~~~~~~i----~~f~~---------- 1533 (2158)
|+|.+..+.+..+...+..+..+... ....+++++|||++.. +.+.+. ++.....+ +.+..
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFF-ECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhh-hcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 99999866655555455555544332 3357999999998752 222221 12111000 11110
Q ss_pred -CCccc--ccEEEEecccccchHHHHHhcChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccc
Q 000114 1534 -GVRPV--PLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2158)
Q Consensus 1534 -~~rpv--~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~ 1608 (2158)
.+||+ +++..+.. ........ .+.....+.+.+ .+++++||||+|++.|+.++..|...
T Consensus 232 ~~~~~~~~~i~~~~~~--~~~~~~~~---l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~----------- 295 (357)
T TIGR03158 232 QSFRPVLPPVELELIP--APDFKEEE---LSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ----------- 295 (357)
T ss_pred cccceeccceEEEEEe--CCchhHHH---HHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh-----------
Confidence 22322 23333322 11111110 111222222222 25678999999999999999766321
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceee
Q 000114 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYY 1688 (2158)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~y 1688 (2158)
..+..+..+||.+++.+|..+ ++.+|||||+++++|||+|.+.||+
T Consensus 296 ----------------------~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~vi~------ 341 (357)
T TIGR03158 296 ----------------------GLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDWLIF------ 341 (357)
T ss_pred ----------------------CCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCceEEE------
Confidence 012347789999999998654 4789999999999999999885553
Q ss_pred cCCCCcCcCCCHHHHHHhhccCC
Q 000114 1689 DGQENAHTDYPVTDLLQMMGHAS 1711 (2158)
Q Consensus 1689 d~~~~~~~~~s~~~~lQr~GRaG 1711 (2158)
.|.+..+|+||+||+|
T Consensus 342 -------~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 342 -------SARDAAAFWQRLGRLG 357 (357)
T ss_pred -------CCCCHHHHhhhcccCC
Confidence 1457999999999997
No 136
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=1e-28 Score=333.39 Aligned_cols=441 Identities=14% Similarity=0.150 Sum_probs=281.2
Q ss_pred HHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCC
Q 000114 1349 VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGE 1428 (2158)
Q Consensus 1349 ~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~ 1428 (2158)
.|...+.+++.++|+|+||||||+ .+|.+-.-......+ ++++..|.|--+...+.++...++..+|..|+.-..
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g--~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr- 155 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKG--LIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR- 155 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCC--ceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec-
Confidence 344445567779999999999998 467432221111223 677788976555555555554444333434432211
Q ss_pred cchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccc-ccCCCCChHHHHHHHHHHHHhhcCCCceEEEe
Q 000114 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGGQGGPVLEVIVSRMRYIASQVENKIRIVAL 1507 (2158)
Q Consensus 1429 ~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~-l~~~~g~~~e~~isrl~~i~~~~~~~~riV~l 1507 (2158)
.+.+.-..++|+|+||+++...+.. ...++++++|||||||. ..+.. .++..++.+... .++.|+|++
T Consensus 156 --f~~~~s~~t~I~v~TpG~LL~~l~~---d~~Ls~~~~IIIDEAHERsLn~D-----fLLg~Lk~lL~~-rpdlKvILm 224 (1294)
T PRK11131 156 --FNDQVSDNTMVKLMTDGILLAEIQQ---DRLLMQYDTIIIDEAHERSLNID-----FILGYLKELLPR-RPDLKVIIT 224 (1294)
T ss_pred --CccccCCCCCEEEEChHHHHHHHhc---CCccccCcEEEecCccccccccc-----hHHHHHHHhhhc-CCCceEEEe
Confidence 1112224679999999998877654 45689999999999994 43321 123334444332 246899999
Q ss_pred ccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHh-HhcCCCEEEEecChHH
Q 000114 1508 STSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH-AKNEKPALVFVPSRKY 1586 (2158)
Q Consensus 1508 SATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~-~~~~~~~IVFv~sr~~ 1586 (2158)
|||+ +.+.++++++..+ ++.... +..|+++.+........... ..........+... ....+.+||||+++.+
T Consensus 225 SATi-d~e~fs~~F~~ap--vI~V~G--r~~pVei~y~p~~~~~~~~~-~d~l~~ll~~V~~l~~~~~GdILVFLpg~~E 298 (1294)
T PRK11131 225 SATI-DPERFSRHFNNAP--IIEVSG--RTYPVEVRYRPIVEEADDTE-RDQLQAIFDAVDELGREGPGDILIFMSGERE 298 (1294)
T ss_pred eCCC-CHHHHHHHcCCCC--EEEEcC--ccccceEEEeecccccchhh-HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHH
Confidence 9999 5678888876433 344433 33444544433221110000 00001111111111 1345789999999999
Q ss_pred HHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEec
Q 000114 1587 VRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666 (2158)
Q Consensus 1587 ~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT 1666 (2158)
++.++..|.... .-...|..+||+|+.++|..+++. .|..+|||||
T Consensus 299 Ie~lae~L~~~~--------------------------------~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVAT 344 (1294)
T PRK11131 299 IRDTADALNKLN--------------------------------LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLAT 344 (1294)
T ss_pred HHHHHHHHHhcC--------------------------------CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEec
Confidence 999997774210 001237789999999999999986 5889999999
Q ss_pred CccccccCCCccEEEEe-c---ceeecCCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHh-
Q 000114 1667 SSMCWGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL- 1737 (2158)
Q Consensus 1667 ~~la~Gvdlp~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l- 1737 (2158)
+++++|||+|++.+||. | ...||++.+. ..+.|..+|.||+|||||. ..|.||.+++..+ |..+.
T Consensus 345 NIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d---~~~~~~ 418 (1294)
T PRK11131 345 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDD---FLSRPE 418 (1294)
T ss_pred cHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHH---HHhhhc
Confidence 99999999999999993 2 3567776442 2346678999999999996 5899999998643 33332
Q ss_pred -hCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHH
Q 000114 1738 -YDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLE 1816 (2158)
Q Consensus 1738 -~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~ 1816 (2158)
..|+...++|...+.... +-.+.+..+ | .| ...|+- +.|++++..|.
T Consensus 419 ~~~PEIlR~~L~~viL~lk-----~lgl~di~~---F---~f-----ldpP~~----------------~~i~~al~~L~ 466 (1294)
T PRK11131 419 FTDPEILRTNLASVILQMT-----ALGLGDIAA---F---PF-----VEAPDK----------------RNIQDGVRLLE 466 (1294)
T ss_pred ccCCccccCCHHHHHHHHH-----HcCCCCcce---e---eC-----CCCCCH----------------HHHHHHHHHHH
Confidence 367777888865544322 212222211 1 11 244432 78999999999
Q ss_pred hCCCeeEcCC-CcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHH
Q 000114 1817 ASKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEE 1885 (2158)
Q Consensus 1817 ~~~~I~~~~~-~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~ 1885 (2158)
+.|+|..+++ +....|++|+.+|.++++|...+++..+....+ ..+++.|.|.- ...+...|+.+..
T Consensus 467 ~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c-~~evl~IaA~L-sv~dpf~~p~~~~ 534 (1294)
T PRK11131 467 ELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGC-VREVMIITSAL-SIQDPRERPMDKQ 534 (1294)
T ss_pred HCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCC-HHHHHHHHHHH-cCCCcccCCchhH
Confidence 9999964322 246789999999999999999999998766554 46666655533 2345555665543
No 137
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=3.3e-29 Score=326.99 Aligned_cols=325 Identities=18% Similarity=0.195 Sum_probs=205.0
Q ss_pred HHHHhc---CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHH
Q 000114 1332 YEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1332 ~~~l~~---gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
|..+|. ||. |+|||.++++.++.+.+++++.||||||||.++.++++..... ....-+.||++|+|+|+.|+++
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~--~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIG--AKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccccc--ccccceEEEeCchHHHHHHHHH
Confidence 444554 687 9999999999999887778999999999998665444422111 1111156678899999999999
Q ss_pred HHHHHhcCCC-----------------------CcEEEEEcCCcchhh--h-cccCCcEEEeCHHHHHH--HHhhhh---
Q 000114 1409 DWEIKFGQGL-----------------------GMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDA--LSRRWK--- 1457 (2158)
Q Consensus 1409 ~~~~~f~~~~-----------------------g~~v~~ltG~~~~~~--~-~l~~~~IIV~TPe~l~~--l~r~~~--- 1457 (2158)
.+.+ +++.+ ++++..++|+...+. . .-..++|||+|++.+.+ +.+.+.
T Consensus 81 ~~~~-~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~ 159 (844)
T TIGR02621 81 EAEK-IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGF 159 (844)
T ss_pred HHHH-HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCcccccccccc
Confidence 9884 44322 478999999977642 2 33456999999765432 000000
Q ss_pred -----ccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhc--CC---CceEEEeccCCCC-hHHHHHHhccCCC
Q 000114 1458 -----QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV--EN---KIRIVALSTSLAN-AKDLGEWIGATSH 1526 (2158)
Q Consensus 1458 -----~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~--~~---~~riV~lSATl~n-~~dl~~wl~~~~~ 1526 (2158)
....+.+++++|+|||| + +.. +...+..|.+.+ +. +.|+++||||++. ..++...+.....
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD-L-d~g------F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~ 231 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH-L-EPA------FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDY 231 (844)
T ss_pred ccccchhhhhccceEEEEehhh-h-ccc------cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCc
Confidence 00136889999999999 3 222 222333333321 22 3699999999975 3344444433321
Q ss_pred ceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHH-hHhcCCCEEEEecChHHHHHHHHHHHhhcccCCccc
Q 000114 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQK 1605 (2158)
Q Consensus 1527 ~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~-~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~ 1605 (2158)
. +.........+-..++ +.... ..... .....+.. ....++++||||||++.|+.++..|..
T Consensus 232 ~-i~V~~~~l~a~ki~q~--v~v~~-e~Kl~----~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~--------- 294 (844)
T TIGR02621 232 K-HPVLKKRLAAKKIVKL--VPPSD-EKFLS----TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPK--------- 294 (844)
T ss_pred e-eecccccccccceEEE--EecCh-HHHHH----HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHh---------
Confidence 1 1111111111000111 11111 00111 01111111 113567899999999999999976621
Q ss_pred ccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHH-----HHHHHHHc----CC-------ceEEEecCcc
Q 000114 1606 SAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE-----VVSALFEA----GK-------IKVCVMSSSM 1669 (2158)
Q Consensus 1606 ~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~-----~v~~~F~~----g~-------i~VLVaT~~l 1669 (2158)
.++..+||+|++.+|. .+++.|++ |. .+|||||+++
T Consensus 295 ----------------------------~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 295 ----------------------------EKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred ----------------------------cCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 2347899999999999 88999987 54 7899999999
Q ss_pred ccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEec
Q 000114 1670 CWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2158)
Q Consensus 1670 a~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~ 1726 (2158)
++|||++...+|. ...|+.+|+||+||+||.|....+.++++..
T Consensus 347 erGLDId~d~VI~-------------d~aP~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISADHLVC-------------DLAPFESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCcceEEE-------------CCCCHHHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999999854443 1246899999999999998444444444433
No 138
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=1.4e-29 Score=319.41 Aligned_cols=302 Identities=18% Similarity=0.216 Sum_probs=196.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH-
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR- 592 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~- 592 (2158)
++++||||||||.+|++++++.+... ...+++|++|+++|+.|+++++...++. .++.++|+.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~---------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQ---------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhC---------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 79999999999999999999887543 2348999999999999999999997653 4555555432100
Q ss_pred ----------h----------hhccccEEEcchhHH-HHHHhccCC-Ccccc--ccceEEeecccccccCChhhHHHHHH
Q 000114 593 ----------Q----------QIEETQIIVTTPEKW-DIITRKSGD-RTYTQ--LVKLLIIDEIHLLHDNRGPVLESIVA 648 (2158)
Q Consensus 593 ----------~----------~~~~~~IiV~TPekl-d~l~r~~~~-~~~l~--~v~lIIiDEaH~l~d~rg~~le~iv~ 648 (2158)
. .....+|+|+||+++ ..+.+.... ...+. ..++|||||+|.+.+.....+..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~ 149 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLE 149 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 012467999999997 333331111 01111 23789999999987642222443333
Q ss_pred HHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCccccc---ceeEEEeeccCChhHHHHHhhHHHHH
Q 000114 649 RTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP---LSQQYIGIQVKKPLQRFQLMNDLCYE 725 (2158)
Q Consensus 649 r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~---l~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (2158)
.+ . ..+.|++++|||+| +.+..|+....... ........+ ...+.+.............+..+
T Consensus 150 ~l----~--~~~~~~i~~SATlp--~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--- 215 (358)
T TIGR01587 150 VL----K--DNDVPILLMSATLP--KFLKEYAEKIGYVE---FNEPLDLKEERRFERHRFIKIESDKVGEISSLERL--- 215 (358)
T ss_pred HH----H--HcCCCEEEEecCch--HHHHHHHhcCCCcc---cccCCCCccccccccccceeeccccccCHHHHHHH---
Confidence 33 2 34689999999998 55677765321110 000000000 11111111111111111111111
Q ss_pred HHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCC
Q 000114 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMT 805 (2158)
Q Consensus 726 ~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~ 805 (2158)
+.....++++||||+|++.|+.++..|.+.+.. ..+..+||+|+
T Consensus 216 -~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~-----------------------------------~~~~~~h~~~~ 259 (358)
T TIGR01587 216 -LEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPE-----------------------------------EEIMLLHSRFT 259 (358)
T ss_pred -HHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCC-----------------------------------CeEEEEECCCC
Confidence 122234789999999999999999999875421 24778899999
Q ss_pred HHHHHHH----HHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC--Cc
Q 000114 806 RGDRQLV----EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD--SY 879 (2158)
Q Consensus 806 ~~~R~~v----~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d--~~ 879 (2158)
+.+|..+ ++.|++|..+|||||+++++|||+| +++||+ +.. ++.+|+||+||+||.|.. ..
T Consensus 260 ~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~----~~~--------~~~~~iqr~GR~gR~g~~~~~~ 326 (358)
T TIGR01587 260 EKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT----ELA--------PIDSLIQRLGRLHRYGRKNGEN 326 (358)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE----cCC--------CHHHHHHHhccccCCCCCCCCC
Confidence 9999764 7899999999999999999999997 556665 321 456899999999998754 23
Q ss_pred cEEEEEcCCCc
Q 000114 880 GEGIIITGHSE 890 (2158)
Q Consensus 880 G~~iil~~~~~ 890 (2158)
|.++++...++
T Consensus 327 ~~~~v~~~~~~ 337 (358)
T TIGR01587 327 FEVYIITIAPE 337 (358)
T ss_pred CeEEEEeecCC
Confidence 58888876654
No 139
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2e-30 Score=299.20 Aligned_cols=344 Identities=20% Similarity=0.277 Sum_probs=260.0
Q ss_pred CcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccH
Q 000114 1322 LPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1322 ~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~r 1400 (2158)
++.-.|....+.++.. ||..|+|+|++.+|.++++.+ ++..|-||||||.||.+|+++++.... ..+.|+++++|++
T Consensus 23 fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-~~g~Ralilsptr 100 (529)
T KOG0337|consen 23 FQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTR 100 (529)
T ss_pred ccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCcH
Confidence 3344667778888877 899999999999999999777 999999999999999999999999865 5567999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh--h-cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1401 aLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+.|..+.++ .+++..++++..+.|+.+... . .-.++|||++||+++..+.-.. ...++.|.+||+||++.|.
T Consensus 101 eLa~qtlkvvk-dlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem--~l~l~sveyVVfdEadrlf 177 (529)
T KOG0337|consen 101 ELALQTLKVVK-DLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM--TLTLSSVEYVVFDEADRLF 177 (529)
T ss_pred HHHHHHHHHHH-HhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe--eccccceeeeeehhhhHHH
Confidence 99999999888 789888899887777655442 2 3347899999999987554432 2458899999999999987
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHH
Q 000114 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1478 ~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~ 1557 (2158)
+.+ +-.++..+..+++...|.+++|||+|+. +.+|-.+.. ..|+-+.+.+..--.........
T Consensus 178 emg------fqeql~e~l~rl~~~~QTllfSatlp~~--lv~fakaGl---------~~p~lVRldvetkise~lk~~f~ 240 (529)
T KOG0337|consen 178 EMG------FQEQLHEILSRLPESRQTLLFSATLPRD--LVDFAKAGL---------VPPVLVRLDVETKISELLKVRFF 240 (529)
T ss_pred hhh------hHHHHHHHHHhCCCcceEEEEeccCchh--hHHHHHccC---------CCCceEEeehhhhcchhhhhhee
Confidence 654 6677777777888888999999999853 444443321 11222221111111111111111
Q ss_pred hcC---h-HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000114 1558 AMT---K-PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2158)
Q Consensus 1558 ~~~---k-~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2158)
... + ..+..++......++++|||+|+..++.+..-| ...+
T Consensus 241 ~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll-----------------------------------~~~g 285 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLL-----------------------------------RDFG 285 (529)
T ss_pred eeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHH-----------------------------------HhcC
Confidence 111 1 112222222233557999999999997776433 2246
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~ 1713 (2158)
.++..++|.|.+..|..-...|..++..+||.|++++||+|+|-..-|| |++.|....-|+||+||+.|+
T Consensus 286 ~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi----------nyd~p~~~klFvhRVgr~ara 355 (529)
T KOG0337|consen 286 GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI----------NYDFPPDDKLFVHRVGRVARA 355 (529)
T ss_pred CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc----------cccCCCCCceEEEEecchhhc
Confidence 6788899999999999999999999999999999999999999888787 788888888899999999998
Q ss_pred CCCCceEEEEEecCChHHHHH
Q 000114 1714 LLDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~~~~~~~ 1734 (2158)
| ..|.+|-++.+.+..|+.
T Consensus 356 g--rtg~aYs~V~~~~~~yl~ 374 (529)
T KOG0337|consen 356 G--RTGRAYSLVASTDDPYLL 374 (529)
T ss_pred c--ccceEEEEEecccchhhh
Confidence 7 789999988887755543
No 140
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.96 E-value=7.3e-29 Score=312.81 Aligned_cols=304 Identities=18% Similarity=0.195 Sum_probs=197.3
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh-------
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD------- 1432 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~------- 1432 (2158)
++|+||||||||++|+++++..+.. ...+ +++|++|+++|+.|++++++..|+. +++.++|.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~--~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKAD--RVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGD 74 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCC--eEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCC
Confidence 7999999999999999999988765 3344 9999999999999999999987764 344444432210
Q ss_pred --------------hhcccCCcEEEeCHHHHHHHHhh-hhcc-cccc--ceeEEEecccccccCCCCChHHHHHHHHHHH
Q 000114 1433 --------------LKLLEKGQIIISTPEKWDALSRR-WKQR-KYVQ--QVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (2158)
Q Consensus 1433 --------------~~~l~~~~IIV~TPe~l~~l~r~-~~~~-~~l~--~v~llIiDEaH~l~~~~g~~~e~~isrl~~i 1494 (2158)
......++|+|+||+++...+.. .... ..+. ..+++|+||+|.+.+... +.+...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~---~~l~~~l~~l 151 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTL---ALILAVLEVL 151 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHH---HHHHHHHHHH
Confidence 00123458999999998765443 1111 1111 237999999999976432 2233333333
Q ss_pred HhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccc-cEEEEecccccchHHHHHhcChHHHHHHHHhHhc
Q 000114 1495 ASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVP-LEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKN 1573 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~-l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~ 1573 (2158)
. ..+.|++++|||++ +.+.+|+...............+.. ...+......... .........+......
T Consensus 152 ~---~~~~~~i~~SATlp--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~~~~~~ 221 (358)
T TIGR01587 152 K---DNDVPILLMSATLP--KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDK-----VGEISSLERLLEFIKK 221 (358)
T ss_pred H---HcCCCEEEEecCch--HHHHHHHhcCCCcccccCCCCccccccccccceeecccc-----ccCHHHHHHHHHHhhC
Confidence 2 24789999999997 3455555332111000000000000 0000000000000 0111222333343356
Q ss_pred CCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH--
Q 000114 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV-- 1651 (2158)
Q Consensus 1574 ~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v-- 1651 (2158)
++++||||+|++.|+.++..|.... ....+..+||++++.+|..+
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~---------------------------------~~~~~~~~h~~~~~~~r~~~~~ 268 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENA---------------------------------PEEEIMLLHSRFTEKDRAKKEA 268 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhc---------------------------------CCCeEEEEECCCCHHHHHHHHH
Confidence 7899999999999999997764311 11258999999999999764
Q ss_pred --HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCC--CceEEEEEecC
Q 000114 1652 --SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD--NSGKCVILCHA 1727 (2158)
Q Consensus 1652 --~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d--~~G~~iil~~~ 1727 (2158)
++.|++|..+|||||+++++|+|+|...+|. .+.|+.+|+||+||+||.|.. ..|.++++...
T Consensus 269 ~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~-------------~~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 269 ELLEEMKKNEKFVIVATQVIEASLDISADVMIT-------------ELAPIDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred HHHHHhcCCCCeEEEECcchhceeccCCCEEEE-------------cCCCHHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 7899999999999999999999998665554 245789999999999998743 23588888776
Q ss_pred Ch
Q 000114 1728 PR 1729 (2158)
Q Consensus 1728 ~~ 1729 (2158)
+.
T Consensus 336 ~~ 337 (358)
T TIGR01587 336 PE 337 (358)
T ss_pred CC
Confidence 54
No 141
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=2e-28 Score=292.07 Aligned_cols=338 Identities=20% Similarity=0.242 Sum_probs=227.5
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1337 ~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
++.-+++.+|..+....+. .|+||+.|||=|||++|.+.+...+.. .++ ++|+++||+-|+.|.+..+++.++
T Consensus 11 p~~ie~R~YQ~~i~a~al~--~NtLvvlPTGLGKT~IA~~V~~~~l~~--~~~--kvlfLAPTKPLV~Qh~~~~~~v~~- 83 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALF--KNTLVVLPTGLGKTFIAAMVIANRLRW--FGG--KVLFLAPTKPLVLQHAEFCRKVTG- 83 (542)
T ss_pred cccccHHHHHHHHHHHHhh--cCeEEEecCCccHHHHHHHHHHHHHHh--cCC--eEEEecCCchHHHHHHHHHHHHhC-
Confidence 3456889999999988875 389999999999999999999988877 233 899999999999999999996554
Q ss_pred CCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHH
Q 000114 1417 GLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i 1494 (2158)
...-.++.+||....+ ...+.+++|+|+||+.+.+=+.. ++..+.++.|+|+||||+-. +++.|-.+......
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~--Grid~~dv~~lifDEAHRAv--GnyAYv~Va~~y~~- 158 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKA--GRIDLDDVSLLIFDEAHRAV--GNYAYVFVAKEYLR- 158 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc--CccChHHceEEEechhhhcc--CcchHHHHHHHHHH-
Confidence 3345789999998877 44778889999999998665444 56678999999999999864 33344434332221
Q ss_pred HhhcCCCceEEEeccCCCCh----HHHHHHhccCCCceE-ecCCCCcccccEEEE--ecccccchHHH----HHhcChHH
Q 000114 1495 ASQVENKIRIVALSTSLANA----KDLGEWIGATSHGLF-NFPPGVRPVPLEIHI--QGVDITNFEAR----MQAMTKPT 1563 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSATl~n~----~dl~~wl~~~~~~i~-~f~~~~rpv~l~~~i--~~~~~~~~~~~----~~~~~k~~ 1563 (2158)
..++++++|||||+++. .++.+-||.....+- .-+++++|.--.+.+ ...+.+..... +..+.++.
T Consensus 159 ---~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 159 ---SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred ---hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 25688999999999873 344455555432211 124444443222111 11111100000 00000000
Q ss_pred HH------------------------------------------------------------------------------
Q 000114 1564 FT------------------------------------------------------------------------------ 1565 (2158)
Q Consensus 1564 ~~------------------------------------------------------------------------------ 1565 (2158)
+.
T Consensus 236 Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~ 315 (542)
T COG1111 236 LKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK 315 (542)
T ss_pred HHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc
Confidence 00
Q ss_pred ----------------------------------------HHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCc
Q 000114 1566 ----------------------------------------AIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2158)
Q Consensus 1566 ----------------------------------------~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~ 1603 (2158)
.+..++ ..+.++|||++.|..|+.++..|........
T Consensus 316 ~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~- 394 (542)
T COG1111 316 GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR- 394 (542)
T ss_pred cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-
Confidence 000011 1223566777666666666655532211000
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEe
Q 000114 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2158)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~ 1683 (2158)
..+.+.+-.-+..||++.+++.+++.|++|..+|||||++.+.|+|+|.+.+||
T Consensus 395 -------------------------~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVi- 448 (542)
T COG1111 395 -------------------------VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVI- 448 (542)
T ss_pred -------------------------eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEE-
Confidence 011122222344789999999999999999999999999999999999999999
Q ss_pred cceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
+|++.. |...++||.||+|| ...|.+++|....
T Consensus 449 ---fYEpvp------SeIR~IQR~GRTGR---~r~Grv~vLvt~g 481 (542)
T COG1111 449 ---FYEPVP------SEIRSIQRKGRTGR---KRKGRVVVLVTEG 481 (542)
T ss_pred ---EecCCc------HHHHHHHhhCcccc---CCCCeEEEEEecC
Confidence 666543 68889999999999 5799999988877
No 142
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=6.6e-28 Score=327.29 Aligned_cols=448 Identities=14% Similarity=0.167 Sum_probs=290.8
Q ss_pred CCCCCHHHH--HHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1339 FKHFNPIQT--QVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1339 f~~~~~iQ~--q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
|..--|+.. +.|...+.+++.++|+|+||||||.. +|.+-.-......+ ++++..|.|--|...+.++.+.++.
T Consensus 62 ~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~~~~--~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 62 YPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRGSHG--LIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred CCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCCCCc--eEecCCccHHHHHHHHHHHHHHhCC
Confidence 333344443 44445556677899999999999985 45442221111223 7888999999999999999988876
Q ss_pred CCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccc-ccCCCCChHHHHHHHHHHHH
Q 000114 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGGQGGPVLEVIVSRMRYIA 1495 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~-l~~~~g~~~e~~isrl~~i~ 1495 (2158)
..|..|+.-.. .+.+.-.+++|+++||+.+...+.. ...+.++++|||||||. ..+. ..++..++.+.
T Consensus 138 ~lG~~VGY~vR---~~~~~s~~T~I~~~TdGiLLr~l~~---d~~L~~~~~IIIDEaHERsL~~-----D~LL~lLk~il 206 (1283)
T TIGR01967 138 PLGEKVGYKVR---FHDQVSSNTLVKLMTDGILLAETQQ---DRFLSRYDTIIIDEAHERSLNI-----DFLLGYLKQLL 206 (1283)
T ss_pred CcceEEeeEEc---CCcccCCCceeeeccccHHHHHhhh---CcccccCcEEEEcCcchhhccc-----hhHHHHHHHHH
Confidence 55666654221 1222224668999999998765543 45689999999999993 3321 22334444444
Q ss_pred hhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccch---HHHHHhcChHHHHHHHHhH-
Q 000114 1496 SQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF---EARMQAMTKPTFTAIVQHA- 1571 (2158)
Q Consensus 1496 ~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~---~~~~~~~~k~~~~~i~~~~- 1571 (2158)
.. .++.|+|+||||+ +.+.++++++..+ ++.... |..|+++.+........ ..... .....+....
T Consensus 207 ~~-rpdLKlIlmSATl-d~~~fa~~F~~ap--vI~V~G--r~~PVev~Y~~~~~~~~~~~~~~~~----~i~~~I~~l~~ 276 (1283)
T TIGR01967 207 PR-RPDLKIIITSATI-DPERFSRHFNNAP--IIEVSG--RTYPVEVRYRPLVEEQEDDDLDQLE----AILDAVDELFA 276 (1283)
T ss_pred hh-CCCCeEEEEeCCc-CHHHHHHHhcCCC--EEEECC--CcccceeEEecccccccchhhhHHH----HHHHHHHHHHh
Confidence 33 3578999999999 5678999887533 343333 34445554433221110 01111 1112222111
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
...+.+|||+|++++++.++..|..... -...|..+||+|+.++|..+
T Consensus 277 ~~~GdILVFLpg~~EI~~l~~~L~~~~~--------------------------------~~~~VlpLhg~Ls~~eQ~~v 324 (1283)
T TIGR01967 277 EGPGDILIFLPGEREIRDAAEILRKRNL--------------------------------RHTEILPLYARLSNKEQQRV 324 (1283)
T ss_pred hCCCCEEEeCCCHHHHHHHHHHHHhcCC--------------------------------CCcEEEeccCCCCHHHHHHH
Confidence 2457899999999999999877643110 01237889999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEe-c---ceeecCCCCcC----cCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM-G---TQYYDGQENAH----TDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~-g---t~~yd~~~~~~----~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
++.+ +..+|||||+++++|||+|++.+||. | ...|+++.+.. .+.|..+|.||+|||||.| .|.||.
T Consensus 325 f~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyR 399 (1283)
T TIGR01967 325 FQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIR 399 (1283)
T ss_pred hCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEE
Confidence 7654 34799999999999999999999993 2 34577665432 4567899999999999975 999999
Q ss_pred EecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHH
Q 000114 1724 LCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDH 1803 (2158)
Q Consensus 1724 l~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~ 1803 (2158)
+++......... ...|+...++|...+.. +..-.+.+..+ |. +...|+
T Consensus 400 Lyte~~~~~~~~-~~~PEIlR~~L~~viL~-----l~~lg~~di~~--------f~---fldpP~--------------- 447 (1283)
T TIGR01967 400 LYSEEDFNSRPE-FTDPEILRTNLASVILQ-----MLALRLGDIAA--------FP---FIEAPD--------------- 447 (1283)
T ss_pred ecCHHHHHhhhh-ccCcccccccHHHHHHH-----HHhcCCCCccc--------cc---CCCCCC---------------
Confidence 998654322211 23677777777554442 22212222211 11 123343
Q ss_pred HHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcch
Q 000114 1804 LSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGE 1883 (2158)
Q Consensus 1804 l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E 1883 (2158)
.+.++.++..|...|+|..+. .....|++|+.+|.++++|...+++..+....+ ...++.|.|.-+ ..+...|+.+
T Consensus 448 -~~~i~~A~~~L~~LGAld~~~-~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gc-l~e~l~IaA~Ls-~~dp~~~p~~ 523 (1283)
T TIGR01967 448 -PRAIRDGFRLLEELGALDDDE-AEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGC-LQEVLIIASALS-IQDPRERPME 523 (1283)
T ss_pred -HHHHHHHHHHHHHCCCCCCCC-CCccccHHHHHHhhcCCChHHHHHHHHhhhcCC-HHHHHHHHHHHc-CCCcCCCcch
Confidence 268899999999999995321 125788999999999999999999998766554 455665555433 3454445554
Q ss_pred H
Q 000114 1884 E 1884 (2158)
Q Consensus 1884 ~ 1884 (2158)
.
T Consensus 524 ~ 524 (1283)
T TIGR01967 524 K 524 (1283)
T ss_pred h
Confidence 4
No 143
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3e-28 Score=299.53 Aligned_cols=441 Identities=16% Similarity=0.189 Sum_probs=300.7
Q ss_pred HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc-cCCcEEEEE
Q 000114 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584 (2158)
Q Consensus 506 ~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~-~~gi~v~~l 584 (2158)
.+++.++.++|.|+||||||......+.+.-.. ...+|.+..|+|--|..++++...-.+ .+|-.|+..
T Consensus 61 ~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~----------~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 61 YAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA----------SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHCCEEEEEcCCCCCccccHhHHHHhcccc----------cCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 346778889999999999998754444333211 122599999999999999888876432 334444332
Q ss_pred eCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEE
Q 000114 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLV 664 (2158)
Q Consensus 585 ~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv 664 (2158)
. .+++.....+.|.+.|.+ ++.|.......++.+++||+|||| +|.-....++.-+.+ +-...++.|+|
T Consensus 131 I---RFed~ts~~TrikymTDG---~LLRE~l~Dp~LskYsvIIlDEAH----ERsl~TDiLlGlLKk-i~~~R~~LklI 199 (674)
T KOG0922|consen 131 I---RFEDSTSKDTRIKYMTDG---MLLREILKDPLLSKYSVIILDEAH----ERSLHTDILLGLLKK-ILKKRPDLKLI 199 (674)
T ss_pred E---EecccCCCceeEEEecch---HHHHHHhcCCccccccEEEEechh----hhhhHHHHHHHHHHH-HHhcCCCceEE
Confidence 2 223333347899999999 677777666889999999999999 454444444443333 33456789999
Q ss_pred EEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChH
Q 000114 665 GLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRK 744 (2158)
Q Consensus 665 ~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~ 744 (2158)
.+|||+ |.+.+..|+.. .+++...+...|| +..+...+.. +-....-..+. .+....+.+.+|||.+.+.
T Consensus 200 imSATl-da~kfS~yF~~---a~i~~i~GR~fPV--ei~y~~~p~~---dYv~a~~~tv~-~Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 200 IMSATL-DAEKFSEYFNN---APILTIPGRTFPV--EILYLKEPTA---DYVDAALITVI-QIHLTEPPGDILVFLTGQE 269 (674)
T ss_pred EEeeee-cHHHHHHHhcC---CceEeecCCCCce--eEEeccCCch---hhHHHHHHHHH-HHHccCCCCCEEEEeCCHH
Confidence 999998 68889998875 3456665555554 4333321111 11111111112 2333355779999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEE
Q 000114 745 ETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824 (2158)
Q Consensus 745 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VL 824 (2158)
+.+.++..|.+........ .+.-+...||.|+.+++..|++.-..|..+|+
T Consensus 270 EIe~~~~~l~e~~~~~~~~-----------------------------~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvI 320 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPED-----------------------------CPELILPLYGALPSEEQSRVFDPAPPGKRKVI 320 (674)
T ss_pred HHHHHHHHHHHHhhhcccc-----------------------------CcceeeeecccCCHHHhhccccCCCCCcceEE
Confidence 9999999998764221100 11124556999999999999999999999999
Q ss_pred EechhhhhccCCCceEEEEec----ccccCCCCCc----cccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHH
Q 000114 825 VSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 825 VaT~tla~GVdlP~v~vVI~~----~~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
+||++++..|.+|++.+||+. ...|+|..|. ..++|.++..||.|||||.| .|+|+.+++..+ |.+
T Consensus 321 lsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~~---~~~ 394 (674)
T KOG0922|consen 321 LSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTESA---YDK 394 (674)
T ss_pred EEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHHH---Hhh
Confidence 999999999999999999997 3568888772 46799999999999999975 799999999765 355
Q ss_pred hhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHH
Q 000114 897 LMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA 976 (2158)
Q Consensus 897 ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~ 976 (2158)
+..++.|-... ..|...+..-.++| ..||.-+... ..+-.+.+..|+
T Consensus 395 ~~~~~~PEI~R--~~Ls~~vL~Lkalg---------------------i~d~l~F~f~----------d~P~~~~l~~AL 441 (674)
T KOG0922|consen 395 MPLQTVPEIQR--VNLSSAVLQLKALG---------------------INDPLRFPFI----------DPPPPEALEEAL 441 (674)
T ss_pred cccCCCCceee--echHHHHHHHHhcC---------------------CCCcccCCCC----------CCCChHHHHHHH
Confidence 55555552111 11222111111111 1223222211 111235678999
Q ss_pred HHHhHCCCccccccCCccccCh-HHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHH
Q 000114 977 TILDRNNLVKYDRKSGYFQVTD-LGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMEL 1052 (2158)
Q Consensus 977 ~~L~~~~~i~~~~~~~~~~~T~-lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l 1052 (2158)
..|...|.|+.+ | .+|+ +|+.||.+++.|...++...+-+-+|+ .+++.+.|+-+ -.++..|+.++..-
T Consensus 442 ~~L~~lgald~~---g--~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~-~e~l~i~a~Ls-v~~~f~~p~~~~~~ 511 (674)
T KOG0922|consen 442 EELYSLGALDDR---G--KLTSPLGRQMAELPLEPHLSKMLLKSSELGCS-EEILTIAAMLS-VQSVFSRPKDKKAE 511 (674)
T ss_pred HHHHhcCcccCc---C--CcCchHHhhhhhcCCCcchhhhhhhccccCCc-chhhhheeeee-ccceecCccchhhh
Confidence 999999999832 4 4455 999999999999999999887777766 56777776655 56777777665544
No 144
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=1.8e-27 Score=310.97 Aligned_cols=328 Identities=15% Similarity=0.111 Sum_probs=212.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEccCCchhHHH---------HHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTIC---------SEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1344 ~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~---------a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
.+|.++++.+.+++ ++|+.|+||||||.+ |+++.+..+.... .....++++++|||+||.|+..++.+.
T Consensus 167 ~iQ~qil~~i~~gk-dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 167 DVQLKIFEAWISRK-PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHhCC-CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 48999999998755 599999999999987 3344444432211 112238999999999999999998865
Q ss_pred hcC--CCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHH
Q 000114 1414 FGQ--GLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2158)
Q Consensus 1414 f~~--~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~is 1489 (2158)
.+. ..|..+....|+.+.. .......+|+|+|+.. ....++++++||+||||..... +..+ +.
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~-~Dll---L~ 312 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQI-GDII---IA 312 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccc-hhHH---HH
Confidence 542 2467788888887643 1223356899999752 1124788999999999987543 3222 22
Q ss_pred HHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEeccccc-c-hHHHHHhcChHHHHH
Q 000114 1490 RMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-N-FEARMQAMTKPTFTA 1566 (2158)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~-~-~~~~~~~~~k~~~~~ 1566 (2158)
.++.+. +...|+++||||++. .+.+.+|++... .+... .....|++......... . .........+.....
T Consensus 313 llk~~~---~~~rq~ILmSATl~~dv~~l~~~~~~p~--~I~I~-grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~ 386 (675)
T PHA02653 313 VARKHI---DKIRSLFLMTATLEDDRDRIKEFFPNPA--FVHIP-GGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTA 386 (675)
T ss_pred HHHHhh---hhcCEEEEEccCCcHhHHHHHHHhcCCc--EEEeC-CCcCCCeEEEEeecCcccccchhhhHHHHHHHHHH
Confidence 222221 223489999999974 567778886332 23322 11123444443221110 0 000000001112222
Q ss_pred HHHhH-hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCH
Q 000114 1567 IVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2158)
Q Consensus 1567 i~~~~-~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~ 1645 (2158)
+.... ..++++||||+++++|+.++..|.... .+..+..+||+|++
T Consensus 387 L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~---------------------------------~~~~v~~LHG~Lsq 433 (675)
T PHA02653 387 LKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL---------------------------------PIYDFYIIHGKVPN 433 (675)
T ss_pred HHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc---------------------------------CCceEEeccCCcCH
Confidence 22221 235689999999999999886663210 13458899999997
Q ss_pred HHHHHHHHHH-HcCCceEEEecCccccccCCCccEEEEecceeecC--CCCcCcCCCHHHHHHhhccCCCCCCCCceEEE
Q 000114 1646 TDQEVVSALF-EAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDG--QENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2158)
Q Consensus 1646 ~dR~~v~~~F-~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~--~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~i 1722 (2158)
. ..+++.| ++|+.+|||||+++++|||+|++.+||-....+.+ ..+...+.|..+|.||+|||||. ..|.|+
T Consensus 434 ~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~ 508 (675)
T PHA02653 434 I--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYV 508 (675)
T ss_pred H--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEE
Confidence 5 4555666 78999999999999999999999999932211111 12234567899999999999996 589999
Q ss_pred EEecCCh
Q 000114 1723 ILCHAPR 1729 (2158)
Q Consensus 1723 il~~~~~ 1729 (2158)
.+++...
T Consensus 509 rLyt~~~ 515 (675)
T PHA02653 509 YFYDLDL 515 (675)
T ss_pred EEECHHH
Confidence 9997754
No 145
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=1.9e-28 Score=324.59 Aligned_cols=330 Identities=21% Similarity=0.306 Sum_probs=257.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|.+.|+|-|.+|+.+++.|.+ ++|.+|||+||++||+||++ -.++ .+|+|.|..+|+.++...+..
T Consensus 261 g~~~FR~~Q~eaI~~~l~Gkd-~fvlmpTG~GKSLCYQlPA~------l~~g--itvVISPL~SLm~DQv~~L~~----- 326 (941)
T KOG0351|consen 261 GHKGFRPNQLEAINATLSGKD-CFVLMPTGGGKSLCYQLPAL------LLGG--VTVVISPLISLMQDQVTHLSK----- 326 (941)
T ss_pred ccccCChhHHHHHHHHHcCCc-eEEEeecCCceeeEeecccc------ccCC--ceEEeccHHHHHHHHHHhhhh-----
Confidence 589999999999999988777 99999999999999999987 2244 889999999999998886641
Q ss_pred CCcEEEEEcCCcchh-----hhcccC----CcEEEeCHHHHHHHHhhhhccccccc---eeEEEecccccccCCCCChHH
Q 000114 1418 LGMRVVELTGETAMD-----LKLLEK----GQIIISTPEKWDALSRRWKQRKYVQQ---VSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~-----~~~l~~----~~IIV~TPe~l~~l~r~~~~~~~l~~---v~llIiDEaH~l~~~~g~~~e 1485 (2158)
.++....++|+.... .+.+.. .+|+..|||++...-+.......+.. +.++||||||++. .+|+.|+
T Consensus 327 ~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS-qWgHdFR 405 (941)
T KOG0351|consen 327 KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS-QWGHDFR 405 (941)
T ss_pred cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh-hhccccc
Confidence 368888888877653 222332 38999999998653332222233444 9999999999996 5679999
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHH
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPT 1563 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~ 1563 (2158)
.-+.++..+....+. +.+++||||... .+|+.+-|+.....++. .++.+..+...+..-..... ....
T Consensus 406 p~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~sfnR~NL~yeV~~k~~~~~-------~~~~ 475 (941)
T KOG0351|consen 406 PSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFK--SSFNRPNLKYEVSPKTDKDA-------LLDI 475 (941)
T ss_pred HHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceec--ccCCCCCceEEEEeccCccc-------hHHH
Confidence 999999888776654 899999999854 57999999987665443 33333344444433221110 0111
Q ss_pred HHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCC
Q 000114 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2158)
Q Consensus 1564 ~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l 1643 (2158)
...+... .+..++||||.+|+.|+.++..|.. .+...++||+||
T Consensus 476 ~~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~-----------------------------------~~~~a~~YHAGl 519 (941)
T KOG0351|consen 476 LEESKLR-HPDQSGIIYCLSRKECEQVSAVLRS-----------------------------------LGKSAAFYHAGL 519 (941)
T ss_pred HHHhhhc-CCCCCeEEEeCCcchHHHHHHHHHH-----------------------------------hchhhHhhhcCC
Confidence 2222223 6788999999999999999977633 234578999999
Q ss_pred CHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
+..+|..|.+.|..++++|+|||=++++|||.|+++.|| |+..|-++..|.|-+|||||.| ....|++
T Consensus 520 ~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi----------H~~lPks~E~YYQE~GRAGRDG--~~s~C~l 587 (941)
T KOG0351|consen 520 PPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI----------HYSLPKSFEGYYQEAGRAGRDG--LPSSCVL 587 (941)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE----------ECCCchhHHHHHHhccccCcCC--CcceeEE
Confidence 999999999999999999999999999999999999999 8999999999999999999987 6788999
Q ss_pred EecCChHHHHHHHhhCC
Q 000114 1724 LCHAPRKEYYKKFLYDA 1740 (2158)
Q Consensus 1724 l~~~~~~~~~~k~l~~~ 1740 (2158)
|+...+....+.++...
T Consensus 588 ~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 588 LYGYADISELRRLLTSG 604 (941)
T ss_pred ecchhHHHHHHHHHHcc
Confidence 99888777777777765
No 146
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=7.8e-28 Score=313.17 Aligned_cols=310 Identities=15% Similarity=0.177 Sum_probs=203.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..|+++|.++++.++.++ +.+++||||+|||.++...+...+... ..++||++||++|+.|+.++|.++
T Consensus 113 ~~~r~~Q~~av~~~l~~~-~~il~apTGsGKT~i~~~l~~~~~~~~----------~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNN-RRLLNLPTSAGKSLIQYLLSRYYLENY----------EGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred CCCCHHHHHHHHHHHhcC-ceEEEeCCCCCHHHHHHHHHHHHHhcC----------CCeEEEEECcHHHHHHHHHHHHHh
Confidence 589999999999988764 489999999999998765433223221 238999999999999999999986
Q ss_pred cccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHH
Q 000114 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~ 653 (2158)
+......+..+.|+.... ...+|+|+||+++. +.. ..+++++++||+||||++.. ..++.++..+
T Consensus 182 ~~~~~~~~~~i~~g~~~~----~~~~I~VaT~qsl~---~~~--~~~~~~~~~iIvDEaH~~~~---~~~~~il~~~--- 246 (501)
T PHA02558 182 RLFPREAMHKIYSGTAKD----TDAPIVVSTWQSAV---KQP--KEWFDQFGMVIVDECHLFTG---KSLTSIITKL--- 246 (501)
T ss_pred ccccccceeEEecCcccC----CCCCEEEeeHHHHh---hch--hhhccccCEEEEEchhcccc---hhHHHHHHhh---
Confidence 543334454455544322 35789999999752 222 13567899999999999864 3355444432
Q ss_pred HhhccccccEEEEccccCChHH-H---HHHHhccccCceEEecC-----CcccccceeEEEee--ccC--------ChhH
Q 000114 654 IETTKEHIRLVGLSATLPNYED-V---ALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIGI--QVK--------KPLQ 714 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~d-v---~~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~~--~~~--------~~~~ 714 (2158)
....+++|||||+++... . ..+++.. ...... .-..+++....+.. +.. ....
T Consensus 247 ----~~~~~~lGLTATp~~~~~~~~~~~~~fG~i----~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 318 (501)
T PHA02558 247 ----DNCKFKFGLTGSLRDGKANILQYVGLFGDI----FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQE 318 (501)
T ss_pred ----hccceEEEEeccCCCccccHHHHHHhhCCc----eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHH
Confidence 234678999999864221 1 1112110 000000 00001111111100 000 0000
Q ss_pred HHH------HhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcc
Q 000114 715 RFQ------LMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2158)
Q Consensus 715 ~~~------~l~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 787 (2158)
.+. .-+..+...+.... .+++++|||+++++++.+++.|...+.
T Consensus 319 ~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~----------------------------- 369 (501)
T PHA02558 319 EIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYD----------------------------- 369 (501)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCC-----------------------------
Confidence 000 01122222222222 357899999999999999998887542
Q ss_pred hhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEec-hhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHH
Q 000114 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST-ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (2158)
Q Consensus 788 ~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT-~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Q 866 (2158)
.+.++||+|+.++|..+++.|++|...||||| +++++|+|+|.+++||. ++|.+ |...|+|
T Consensus 370 --------~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p~~------s~~~~~Q 431 (501)
T PHA02558 370 --------KVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHPSK------SKIIVLQ 431 (501)
T ss_pred --------CEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE----ecCCc------chhhhhh
Confidence 35677999999999999999999999999998 89999999999999997 56665 6778999
Q ss_pred hhcccCCCCCCCccEEEEE
Q 000114 867 MLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 867 r~GRAGR~g~d~~G~~iil 885 (2158)
|+||+||++.+ +..++++
T Consensus 432 riGR~~R~~~~-K~~~~i~ 449 (501)
T PHA02558 432 SIGRVLRKHGS-KSIATVW 449 (501)
T ss_pred hhhccccCCCC-CceEEEE
Confidence 99999998643 3445554
No 147
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=7.6e-28 Score=304.12 Aligned_cols=343 Identities=24% Similarity=0.360 Sum_probs=222.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
++.-.|+.+|.+....|| .+|+||++|||+|||++|...|++++...+ ..|||++||++-|+.|+...|
T Consensus 58 p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---------~~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---------KGKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred cCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcCC---------cceEEEeeCCchHHHHHHHHH
Confidence 455689999999999999 578999999999999999999999998763 359999999999999999888
Q ss_pred HhhcccCCcEEEEEeCCC-ccCH--hhhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccCChhhHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQ-TLTR--QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~-~~~~--~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~i 646 (2158)
+..+.+ -.+....||. .... ......+|+|+||+.+ +.|.....+. ++.+.++||||||+-.. ...+..+
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~--ls~fs~iv~DE~Hra~k--n~~Y~~V 200 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE--LSDFSLIVFDECHRTSK--NHPYNNI 200 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc--cceEEEEEEcccccccc--cccHHHH
Confidence 877655 3444444553 3222 2356889999999987 4444443332 78899999999998643 2334444
Q ss_pred HHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhc---cc--------------------------------------
Q 000114 647 VARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRV---NL-------------------------------------- 684 (2158)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATlpn-~~dv~~~l~~---~~-------------------------------------- 684 (2158)
+...+.. .....||+|||||+++ .+.+...+.. .+
T Consensus 201 mr~~l~~---k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~ 277 (746)
T KOG0354|consen 201 MREYLDL---KNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGM 277 (746)
T ss_pred HHHHHHh---hhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHH
Confidence 4333322 2233499999999874 2222222110 00
Q ss_pred ----------cCceEEe---cCCcc--c----------ccceeE--EE---------------eec------------cC
Q 000114 685 ----------EKGLFYF---DNSYR--P----------VPLSQQ--YI---------------GIQ------------VK 710 (2158)
Q Consensus 685 ----------~~~~~~f---~~~~r--p----------v~l~~~--~~---------------~~~------------~~ 710 (2158)
..+++.. ...+. + .+-.++ +. ++. ..
T Consensus 278 ~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e 357 (746)
T KOG0354|consen 278 IIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEE 357 (746)
T ss_pred HHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc
Confidence 0000000 00000 0 000000 00 000 00
Q ss_pred ChhHH--------------HHHhhHH----------------HHHHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHh
Q 000114 711 KPLQR--------------FQLMNDL----------------CYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTA 757 (2158)
Q Consensus 711 ~~~~~--------------~~~l~~~----------------~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (2158)
...++ ...|++. +.+.+.+. .+..++||||.+|..|..+-.+|....
T Consensus 358 ~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 358 VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 00000 0111110 11111222 235689999999999999999887521
Q ss_pred hcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCC
Q 000114 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (2158)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP 837 (2158)
....... .+++.|-+....||++.++.++++.|++|.++|||||++++.|+|+|
T Consensus 438 ~~~ir~~--------------------------~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ 491 (746)
T KOG0354|consen 438 ELGIKAE--------------------------IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIG 491 (746)
T ss_pred hcccccc--------------------------eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcc
Confidence 1000000 12223333334799999999999999999999999999999999999
Q ss_pred ceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHH
Q 000114 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893 (2158)
Q Consensus 838 ~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~ 893 (2158)
.+++||. ||..+ ++...+||.|| ||. +.|+++++++..+...
T Consensus 492 ec~lVIc----Yd~~s------npIrmIQrrGR-gRa---~ns~~vll~t~~~~~~ 533 (746)
T KOG0354|consen 492 ECNLVIC----YDYSS------NPIRMVQRRGR-GRA---RNSKCVLLTTGSEVIE 533 (746)
T ss_pred cccEEEE----ecCCc------cHHHHHHHhcc-ccc---cCCeEEEEEcchhHHH
Confidence 9999999 77766 78899999999 996 5799999998554433
No 148
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=8e-28 Score=314.98 Aligned_cols=427 Identities=18% Similarity=0.207 Sum_probs=296.0
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEE
Q 000114 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVR 582 (2158)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~ 582 (2158)
-|-.++..+..++|+||||||||...-..++..... .+.+|++..|.|--|..+++++.+.++ .+++
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~----------~~g~I~~tQPRRlAArsvA~RvAeel~---~~~G 123 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG----------IAGKIGCTQPRRLAARSVAERVAEELG---EKLG 123 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc----------cCCeEEecCchHHHHHHHHHHHHHHhC---CCcC
Confidence 344567777889999999999999887777776541 234899999999888999988887654 3344
Q ss_pred EEeC-CCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccc
Q 000114 583 ELSG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHI 661 (2158)
Q Consensus 583 ~l~G-d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~ 661 (2158)
...| ...++......+.|-++|.+ +++|.......++.+++|||||+| +|.-...-++.-+........++.
T Consensus 124 ~~VGY~iRfe~~~s~~Trik~mTdG---iLlrei~~D~~Ls~ys~vIiDEaH----ERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 124 ETVGYSIRFESKVSPRTRIKVMTDG---ILLREIQNDPLLSGYSVVIIDEAH----ERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred ceeeEEEEeeccCCCCceeEEeccH---HHHHHHhhCcccccCCEEEEcchh----hhhHHHHHHHHHHHHHHhhcCCCc
Confidence 3333 12233344457999999999 667766666789999999999999 566666667776666566666689
Q ss_pred cEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHh--CCCeEEEE
Q 000114 662 RLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA--GKHQVLIF 739 (2158)
Q Consensus 662 riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~--~~~~vLVF 739 (2158)
|+|.||||+ |.+.++.+++. .+++.....-.|| +.+|........ .....+. ..+..+. +.+.+|||
T Consensus 197 KiIimSATl-d~~rfs~~f~~---apvi~i~GR~fPV--ei~Y~~~~~~d~-~l~~ai~----~~v~~~~~~~~GdILvF 265 (845)
T COG1643 197 KLIIMSATL-DAERFSAYFGN---APVIEIEGRTYPV--EIRYLPEAEADY-ILLDAIV----AAVDIHLREGSGSILVF 265 (845)
T ss_pred eEEEEeccc-CHHHHHHHcCC---CCEEEecCCccce--EEEecCCCCcch-hHHHHHH----HHHHHhccCCCCCEEEE
Confidence 999999998 67889999874 3455555544444 444422111111 1122222 2232222 26899999
Q ss_pred ecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCC
Q 000114 740 VHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG 819 (2158)
Q Consensus 740 v~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g 819 (2158)
.+...+...+++.|.+..... ..-|...||.|+.+++..+++--..|
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~---------------------------------~~~i~PLy~~L~~~eQ~rvF~p~~~~ 312 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGD---------------------------------DLEILPLYGALSAEEQVRVFEPAPGG 312 (845)
T ss_pred CCcHHHHHHHHHHHHhccccC---------------------------------CcEEeeccccCCHHHHHhhcCCCCCC
Confidence 999999999999998721110 11255679999999999999988888
Q ss_pred CceEEEechhhhhccCCCceEEEEecc----cccCCCCCc----cccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 820 HVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 820 ~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
..+|++||++++.++.+|++++||++. ..||+.+|- .+++|.++..||.|||||.+ .|.||-+++.++
T Consensus 313 ~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~~- 388 (845)
T COG1643 313 KRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEED- 388 (845)
T ss_pred cceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHHH-
Confidence 888999999999999999999999973 468888772 36799999999999999975 799999999744
Q ss_pred HHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHH
Q 000114 892 RYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADL 971 (2158)
Q Consensus 892 ~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~l 971 (2158)
|..+...+.| +.+...|..-+... ..| .+..+|..+ +.+..+-...
T Consensus 389 --~~~~~~~t~P------EIlrtdLs~~vL~l--------~~~--------G~~~d~~~f----------~fld~P~~~~ 434 (845)
T COG1643 389 --FLAFPEFTLP------EILRTDLSGLVLQL--------KSL--------GIGQDIAPF----------PFLDPPPEAA 434 (845)
T ss_pred --HHhcccCCCh------hhhhcchHHHHHHH--------Hhc--------CCCCCcccC----------ccCCCCChHH
Confidence 3344444433 12222221110000 000 000122221 1222222356
Q ss_pred HHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCc
Q 000114 972 VHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSE 1037 (2158)
Q Consensus 972 i~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ 1037 (2158)
+..|+..|...|++..+ -.+|++|+.||.++++|+-+++....-...+. .+++.|.|+-+
T Consensus 435 i~~A~~~L~~LGAld~~-----g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~-~e~~~Ias~Ls 494 (845)
T COG1643 435 IQAALTLLQELGALDDS-----GKLTPLGKQMSLLPLDPRLARMLLTAPEGGCL-GEAATIASMLS 494 (845)
T ss_pred HHHHHHHHHHcCCcCCC-----CCCCHHHHHHHhCCCChHHHHHHHhccccCcH-HHHHHHHHhhc
Confidence 78899999999999754 25999999999999999999999887665553 44554544433
No 149
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=2.5e-28 Score=280.43 Aligned_cols=328 Identities=19% Similarity=0.233 Sum_probs=236.6
Q ss_pred hHHHHHhcCCCCC-CHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHH
Q 000114 1330 PLYEALYQGFKHF-NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1330 ~~~~~l~~gf~~~-~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
+.++.+|. +..| ++.|.+|+.++..++..|.|++|||+||++||+||.|- .++ .+|+++|+.+|+.++.+
T Consensus 9 eaLKK~FG-h~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~------~~g--ITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 9 EALKKLFG-HKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV------HGG--ITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHhC-chhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH------hCC--eEEEehHHHHHHHHHHH
Confidence 34566665 6555 78999999999999988999999999999999999982 345 88999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcCCcchhh--------h-cccCCcEEEeCHHHHHH-----HHhhhhccccccceeEEEecccc
Q 000114 1409 DWEIKFGQGLGMRVVELTGETAMDL--------K-LLEKGQIIISTPEKWDA-----LSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1409 ~~~~~f~~~~g~~v~~ltG~~~~~~--------~-~l~~~~IIV~TPe~l~~-----l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
.+. ++ .+.+..+.+..+... + .-.+..+++.|||.... ++... ..-..++++|+||||
T Consensus 80 HL~-~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L---~~r~~L~Y~vVDEAH 151 (641)
T KOG0352|consen 80 HLK-RL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL---ANRDVLRYIVVDEAH 151 (641)
T ss_pred HHH-hc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH---hhhceeeeEEechhh
Confidence 887 33 344544554433321 1 11233899999998643 22221 123568999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCcccccEEEEecccccch
Q 000114 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552 (2158)
Q Consensus 1475 ~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~ 1552 (2158)
++. .+|+.++.-+-++..+.+.++ .+..|+|+||... -+|+...|........--.|.+|.. +..
T Consensus 152 CVS-QWGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~N-LFY---------- 218 (641)
T KOG0352|consen 152 CVS-QWGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDN-LFY---------- 218 (641)
T ss_pred hHh-hhccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhh-hhH----------
Confidence 996 557777777777777776654 7889999999754 3677776665432211113333321 110
Q ss_pred HHHHHhcChHHHHHHH----HhHh-----------cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccch
Q 000114 1553 EARMQAMTKPTFTAIV----QHAK-----------NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2158)
Q Consensus 1553 ~~~~~~~~k~~~~~i~----~~~~-----------~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2158)
...+.......+..+. ..+. ..+-.||||.||++|+.+|..|.
T Consensus 219 D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~---------------------- 276 (641)
T KOG0352|consen 219 DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE---------------------- 276 (641)
T ss_pred HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh----------------------
Confidence 0011111111111111 1111 12448999999999999996552
Q ss_pred hhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcC
Q 000114 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697 (2158)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~ 1697 (2158)
.-+.+...||+||...+|..|.+.+.+|++.||+||..+++|||-|++++|| |.+++
T Consensus 277 -------------~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi----------HW~~~ 333 (641)
T KOG0352|consen 277 -------------IAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI----------HWSPS 333 (641)
T ss_pred -------------hcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE----------ecCch
Confidence 2345567899999999999999999999999999999999999999999999 78888
Q ss_pred CCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHH
Q 000114 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1698 ~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~ 1734 (2158)
-++.-|.|..|||||.| ..+.|=+++...+++.+.
T Consensus 334 qn~AgYYQESGRAGRDG--k~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRDG--KRSYCRLYYSRQDKNALN 368 (641)
T ss_pred hhhHHHHHhccccccCC--CccceeeeecccchHHHH
Confidence 89999999999999987 678899998888776655
No 150
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.5e-27 Score=285.50 Aligned_cols=476 Identities=17% Similarity=0.189 Sum_probs=318.3
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCC
Q 000114 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYD 578 (2158)
Q Consensus 499 iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~g 578 (2158)
+-.+.+. +.+.+..++|.|.||||||......+... .....+.+|-+..|.|--|..++.++.+ .+|
T Consensus 269 ykdell~-av~e~QVLiI~GeTGSGKTTQiPQyL~Ea---------Gytk~gk~IgcTQPRRVAAmSVAaRVA~---EMg 335 (902)
T KOG0923|consen 269 YKDELLK-AVKEHQVLIIVGETGSGKTTQIPQYLYEA---------GYTKGGKKIGCTQPRRVAAMSVAARVAE---EMG 335 (902)
T ss_pred hHHHHHH-HHHhCcEEEEEcCCCCCccccccHHHHhc---------ccccCCceEeecCcchHHHHHHHHHHHH---HhC
Confidence 3344444 45667778999999999998654333222 1222455699999999999999988876 344
Q ss_pred cEEEEEeC-CCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhc
Q 000114 579 VKVRELSG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2158)
Q Consensus 579 i~v~~l~G-d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~ 657 (2158)
++.+--.| ...+.+.....+-|-++|.+ +|.|.......+..+++|||||||. |.-...-++.-+.. +...
T Consensus 336 vkLG~eVGYsIRFEdcTSekTvlKYMTDG---mLlREfL~epdLasYSViiiDEAHE----RTL~TDILfgLvKD-Iar~ 407 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDCTSEKTVLKYMTDG---MLLREFLSEPDLASYSVIIVDEAHE----RTLHTDILFGLVKD-IARF 407 (902)
T ss_pred cccccccceEEEeccccCcceeeeeecch---hHHHHHhccccccceeEEEeehhhh----hhhhhhHHHHHHHH-HHhh
Confidence 44433333 11222333356788999999 5677766667888999999999993 33333323322222 2234
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHH---HhCCC
Q 000114 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA---VAGKH 734 (2158)
Q Consensus 658 ~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~---~~~~~ 734 (2158)
.+.++++..|||+ +++.+..|+.. .++|.+.+.-.||.+ .|-..++.+ -+ +.++..++. ..+.+
T Consensus 408 RpdLKllIsSAT~-DAekFS~fFDd---apIF~iPGRRyPVdi--~Yt~~PEAd---Yl----dAai~tVlqIH~tqp~G 474 (902)
T KOG0923|consen 408 RPDLKLLISSATM-DAEKFSAFFDD---APIFRIPGRRYPVDI--FYTKAPEAD---YL----DAAIVTVLQIHLTQPLG 474 (902)
T ss_pred CCcceEEeecccc-CHHHHHHhccC---CcEEeccCcccceee--ecccCCchh---HH----HHHHhhheeeEeccCCc
Confidence 5899999999997 78899999874 567777766555543 322222211 11 122223322 22367
Q ss_pred eEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHH
Q 000114 735 QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814 (2158)
Q Consensus 735 ~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~ 814 (2158)
.+|||.....+.+.+...|.+....-+. ..+++ -|...||.|+.+.+..|++
T Consensus 475 DILVFltGQeEIEt~~e~l~~~~~~LGs-------------------------ki~el---iv~PiYaNLPselQakIFe 526 (902)
T KOG0923|consen 475 DILVFLTGQEEIETVKENLKERCRRLGS-------------------------KIREL---IVLPIYANLPSELQAKIFE 526 (902)
T ss_pred cEEEEeccHHHHHHHHHHHHHHHHHhcc-------------------------ccceE---EEeeccccCChHHHHhhcC
Confidence 8999999999988888887765322111 11111 1455699999999999999
Q ss_pred HHhCCCceEEEechhhhhccCCCceEEEEecc----cccCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEEc
Q 000114 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886 (2158)
Q Consensus 815 ~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~ 886 (2158)
--..|..+|++||++++..+.++++.+||+.. ..|+|.+| ..+++|.+...||+|||||.| .|+|+.++
T Consensus 527 PtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLY 603 (902)
T KOG0923|consen 527 PTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLY 603 (902)
T ss_pred CCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEee
Confidence 99999999999999999999999999999853 56888887 347899999999999999986 79999999
Q ss_pred CCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHH
Q 000114 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGE 966 (2158)
Q Consensus 887 ~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~ 966 (2158)
+.......+..+ ..| .-...+|......--++| +.|.++| . + .+.|
T Consensus 604 t~~aY~~eLE~~--t~P--EIqRtnL~nvVL~LkSLG----I~Dl~~F---d-----------F--------mDpP---- 649 (902)
T KOG0923|consen 604 TAWAYEHELEEM--TVP--EIQRTNLGNVVLLLKSLG----IHDLIHF---D-----------F--------LDPP---- 649 (902)
T ss_pred chhhhhhhhccC--CCc--ceeeccchhHHHHHHhcC----cchhccc---c-----------c--------CCCC----
Confidence 865422222111 112 111223333333323333 2233222 1 1 1111
Q ss_pred HHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCCh
Q 000114 967 RRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 1046 (2158)
Q Consensus 967 ~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~ 1046 (2158)
..+.+..|+..|...|.+.- ...+|.+||.||.|+++|...+++..+-+-.|+ .+++.|.++.+.+..++.|+
T Consensus 650 -p~etL~~aLE~LyaLGALn~-----~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrp 722 (902)
T KOG0923|consen 650 -PTETLLKALEQLYALGALNH-----LGELTKLGRRMAEFPVDPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRP 722 (902)
T ss_pred -ChHHHHHHHHHHHHhhcccc-----ccchhhhhhhhhhcCCCHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecc
Confidence 12456789999999999863 358999999999999999999999887777765 88999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHcCCCC
Q 000114 1047 DEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKL 1087 (2158)
Q Consensus 1047 ~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~ 1087 (2158)
.++..-+.-..+ + +..+.+--.++|+-|-+...-
T Consensus 723 k~~~v~ad~a~~---~----f~~~~gDhi~~L~vyn~w~es 756 (902)
T KOG0923|consen 723 KDKQVHADNARK---N----FEEPVGDHIVLLNVYNQWKES 756 (902)
T ss_pred hhhhhhhhhhhh---c----cCCCCcchhhhhHHHHHHhhc
Confidence 987654432211 1 223344456777777765443
No 151
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=5.9e-27 Score=281.71 Aligned_cols=452 Identities=16% Similarity=0.180 Sum_probs=307.6
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc-cC
Q 000114 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MY 577 (2158)
Q Consensus 499 iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~-~~ 577 (2158)
.+.+.+. .+..++.++|.+.||||||......+++. ... ++..|.+..|.|.-|..+++++..-.+ .+
T Consensus 360 ~R~~ll~-~ir~n~vvvivgETGSGKTTQl~QyL~ed----GY~------~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 360 CRDQLLS-VIRENQVVVIVGETGSGKTTQLAQYLYED----GYA------DNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred HHHHHHH-HHhhCcEEEEEecCCCCchhhhHHHHHhc----ccc------cCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 4555555 34566779999999999998754443332 111 233788999999999999999886442 33
Q ss_pred CcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhc
Q 000114 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2158)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~ 657 (2158)
|-.|+.... +.+-....+.|-+.|.+ +|+|.......+.++++||+||||. |.-....++ -+++..-..
T Consensus 429 G~~VGYsIR---FEdvT~~~T~IkymTDG---iLLrEsL~d~~L~kYSviImDEAHE----RslNtDilf-Gllk~~lar 497 (1042)
T KOG0924|consen 429 GDTVGYSIR---FEDVTSEDTKIKYMTDG---ILLRESLKDRDLDKYSVIIMDEAHE----RSLNTDILF-GLLKKVLAR 497 (1042)
T ss_pred ccccceEEE---eeecCCCceeEEEeccc---hHHHHHhhhhhhhheeEEEechhhh----cccchHHHH-HHHHHHHHh
Confidence 444443222 11112246789999999 6777765556788899999999993 332233222 233333344
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHH--HHHHhCCCe
Q 000114 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK--VVAVAGKHQ 735 (2158)
Q Consensus 658 ~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~--i~~~~~~~~ 735 (2158)
..++++|..|||+ |.+.++.|++. .+.|+..+...||.+ .+...+... -... .+-+. +......+.
T Consensus 498 RrdlKliVtSATm-~a~kf~nfFgn---~p~f~IpGRTyPV~~--~~~k~p~eD---YVea---avkq~v~Ihl~~~~Gd 565 (1042)
T KOG0924|consen 498 RRDLKLIVTSATM-DAQKFSNFFGN---CPQFTIPGRTYPVEI--MYTKTPVED---YVEA---AVKQAVQIHLSGPPGD 565 (1042)
T ss_pred hccceEEEeeccc-cHHHHHHHhCC---CceeeecCCccceEE--EeccCchHH---HHHH---HHhhheEeeccCCCCC
Confidence 5689999999998 78999999983 345666665555543 222221111 1111 11111 112223578
Q ss_pred EEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHH
Q 000114 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815 (2158)
Q Consensus 736 vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~ 815 (2158)
+|||...+..++-++..+.+.......-. .-...|...++.|+..-+..+++.
T Consensus 566 ilIfmtGqediE~t~~~i~~~l~ql~~~~---------------------------~~~L~vlpiYSQLp~dlQ~kiFq~ 618 (1042)
T KOG0924|consen 566 ILIFMTGQEDIECTCDIIKEKLEQLDSAP---------------------------TTDLAVLPIYSQLPADLQAKIFQK 618 (1042)
T ss_pred EEEecCCCcchhHHHHHHHHHHHhhhcCC---------------------------CCceEEEeehhhCchhhhhhhccc
Confidence 99999999999988888876543221110 012236667999999999999999
Q ss_pred HhCCCceEEEechhhhhccCCCceEEEEec----ccccCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEEcC
Q 000114 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2158)
Q Consensus 816 F~~g~i~VLVaT~tla~GVdlP~v~vVI~~----~~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2158)
-..|..+++|||++++..+.+|++.+||+. -.+|++..| ...++|.+..-||.|||||.| .|.||.+++
T Consensus 619 a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYT 695 (1042)
T KOG0924|consen 619 AEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYT 695 (1042)
T ss_pred CCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeehh
Confidence 999999999999999999999999999985 357888877 457899999999999999975 799999988
Q ss_pred CCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHH
Q 000114 888 HSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGER 967 (2158)
Q Consensus 888 ~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~ 967 (2158)
... +..+++....| +..+.++..-+.+-....++|+.+| .| .+ + +
T Consensus 696 e~a--y~~eml~stvP------EIqRTNl~nvVLlLkslgV~dll~F---dF-------------------mD-~----P 740 (1042)
T KOG0924|consen 696 EDA--YKNEMLPSTVP------EIQRTNLSNVVLLLKSLGVDDLLKF---DF-------------------MD-P----P 740 (1042)
T ss_pred hhH--HHhhcccCCCc------hhhhcchhhHHHHHHhcChhhhhCC---Cc-------------------CC-C----C
Confidence 642 33345555444 2333344333333333344555443 11 11 1 1
Q ss_pred HHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChh
Q 000114 968 RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQD 1047 (2158)
Q Consensus 968 ~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~ 1047 (2158)
..+.+.+++..|.-.|.|.. ...+|++|+.|+.|+++|...++++-+..-+|. .++|.|+|+-+- ..|+.|+.
T Consensus 741 ped~~~~sly~Lw~LGAl~~-----~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~-dEilsIvSmLSv-p~VF~rpk 813 (1042)
T KOG0924|consen 741 PEDNLLNSLYQLWTLGALDN-----TGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCS-DEILSIVSMLSV-PAVFYRPK 813 (1042)
T ss_pred HHHHHHHHHHHHHHhhcccc-----CCccchhhHHhhhCCCCchHHHHHHHHhccCcH-HHHHHHHHHhcc-cceeeccc
Confidence 22677889999999999974 348899999999999999999999876666654 788888887553 57889988
Q ss_pred HHHHHHHHh
Q 000114 1048 EKMELAKLL 1056 (2158)
Q Consensus 1048 e~~~l~~l~ 1056 (2158)
|+.+-+.+.
T Consensus 814 er~eead~a 822 (1042)
T KOG0924|consen 814 EREEEADAA 822 (1042)
T ss_pred cchhhhhhH
Confidence 888776654
No 152
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=9.3e-28 Score=275.86 Aligned_cols=332 Identities=18% Similarity=0.304 Sum_probs=233.9
Q ss_pred HhhcCCCCCC-CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 487 QPAFKGMTQL-NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 487 ~~~f~g~~~l-~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
...| |+++| ++.|.+++..+..++.+|.||+|||+||++||.||.|-. .+ ..|++.|..||..+
T Consensus 12 KK~F-Gh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------------~g-ITIV~SPLiALIkD 76 (641)
T KOG0352|consen 12 KKLF-GHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------------GG-ITIVISPLIALIKD 76 (641)
T ss_pred HHHh-CchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------------CC-eEEEehHHHHHHHH
Confidence 3444 55544 789999999999999999999999999999999998864 11 68999999999999
Q ss_pred HHHHHHhhcccCCcEEEEEeCCCccCHhh---------hccccEEEcchhHH--HHHHhccCCCccccccceEEeecccc
Q 000114 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---------~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
+.+.+.++ .+.+..+.+..+..++. .....++.-|||.. +.+.........-..++++|+||||+
T Consensus 77 QiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 77 QIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHC 152 (641)
T ss_pred HHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhh
Confidence 99998764 45666666655433221 23567999999974 11111111112234578999999999
Q ss_pred ccc---CChhhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEEec-CCcccccceeEEEeec
Q 000114 635 LHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFD-NSYRPVPLSQQYIGIQ 708 (2158)
Q Consensus 635 l~d---~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~~~~~~~~~~f~-~~~rpv~l~~~~~~~~ 708 (2158)
+.. ++.|.+-.+-+ ++...+++..|+|+||... .+|+..-|+.. .++-.|. +.||..- |+.+.
T Consensus 153 VSQWGHDFRPDYL~LG~-----LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~--~PVAiFkTP~FR~NL----FYD~~ 221 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGS-----LRSVCPGVPWVALTATANAKVQEDIAFQLKLR--NPVAIFKTPTFRDNL----FYDNH 221 (641)
T ss_pred HhhhccccCcchhhhhh-----HHhhCCCCceEEeecccChhHHHHHHHHHhhc--CcHHhccCcchhhhh----hHHHH
Confidence 854 45555543322 2345678999999999653 46676666643 3333332 3444311 11111
Q ss_pred cCCh-hHHHHHhhHHHHHHHH------HHhC--CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHh
Q 000114 709 VKKP-LQRFQLMNDLCYEKVV------AVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779 (2158)
Q Consensus 709 ~~~~-~~~~~~l~~~~~~~i~------~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 779 (2158)
.++. ..-+..+.+.+...+- +..+ .+..||||.||.+|+.+|-.|...|+...
T Consensus 222 ~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~------------------ 283 (641)
T KOG0352|consen 222 MKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAM------------------ 283 (641)
T ss_pred HHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchH------------------
Confidence 1110 1112222333222111 1111 45789999999999999999887765443
Q ss_pred hhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccC
Q 000114 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTEL 859 (2158)
Q Consensus 780 ~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~ 859 (2158)
.+|+||...+|.+|.+.+.+|++.|++||..+.+|||-|+|+.||+ ||++.
T Consensus 284 -------------------AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~~q------ 334 (641)
T KOG0352|consen 284 -------------------AYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSPSQ------ 334 (641)
T ss_pred -------------------HHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCchh------
Confidence 2499999999999999999999999999999999999999999999 88887
Q ss_pred CHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 860 SPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 860 s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
+.+-|.|-.|||||.| ....|-++++.++...+.-+
T Consensus 335 n~AgYYQESGRAGRDG--k~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDG--KRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred hhHHHHHhccccccCC--CccceeeeecccchHHHHHH
Confidence 8899999999999998 56889999999887765433
No 153
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.5e-26 Score=280.50 Aligned_cols=435 Identities=18% Similarity=0.195 Sum_probs=310.6
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
+.+..++|.|+||||||.-.-..+.+.-.. ..| ++.+..|+|--|..+++++....+..+|-.|+.-.- .+..
T Consensus 64 e~nqvlIviGeTGsGKSTQipQyL~eaG~~--~~g--~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR---Fed~ 136 (674)
T KOG0922|consen 64 EDNQVLIVIGETGSGKSTQIPQYLAEAGFA--SSG--KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR---FEDS 136 (674)
T ss_pred HHCCEEEEEcCCCCCccccHhHHHHhcccc--cCC--cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE---eccc
Confidence 557889999999999997654444433222 344 689999999999999999998887777777654332 1111
Q ss_pred cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh
Q 000114 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~ 1514 (2158)
.-..+.|.+.|.+. ++|.......++++++||+||||. |.-.-..++.-++.+.+. .++.|+|.+|||+ |+
T Consensus 137 ts~~TrikymTDG~---LLRE~l~Dp~LskYsvIIlDEAHE----Rsl~TDiLlGlLKki~~~-R~~LklIimSATl-da 207 (674)
T KOG0922|consen 137 TSKDTRIKYMTDGM---LLREILKDPLLSKYSVIILDEAHE----RSLHTDILLGLLKKILKK-RPDLKLIIMSATL-DA 207 (674)
T ss_pred CCCceeEEEecchH---HHHHHhcCCccccccEEEEechhh----hhhHHHHHHHHHHHHHhc-CCCceEEEEeeee-cH
Confidence 22356899999997 455555678899999999999993 333445567777777654 4579999999998 89
Q ss_pred HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHH
Q 000114 1515 KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDL 1594 (2158)
Q Consensus 1515 ~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L 1594 (2158)
+.+.+|++.-+ ++... .|..|+++.+...+..++..... .....|... .+.+.+|||.+..++.+.++..|
T Consensus 208 ~kfS~yF~~a~--i~~i~--GR~fPVei~y~~~p~~dYv~a~~----~tv~~Ih~~-E~~GDILvFLtGqeEIe~~~~~l 278 (674)
T KOG0922|consen 208 EKFSEYFNNAP--ILTIP--GRTFPVEILYLKEPTADYVDAAL----ITVIQIHLT-EPPGDILVFLTGQEEIEAACELL 278 (674)
T ss_pred HHHHHHhcCCc--eEeec--CCCCceeEEeccCCchhhHHHHH----HHHHHHHcc-CCCCCEEEEeCCHHHHHHHHHHH
Confidence 99999998743 44443 46667777776665555544321 112223333 56678999999999999999888
Q ss_pred HhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccC
Q 000114 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVP 1674 (2158)
Q Consensus 1595 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvd 1674 (2158)
.+........ ...-+..+||+|+.+++.+|++.-..|..+|++||++++.++.
T Consensus 279 ~e~~~~~~~~---------------------------~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlT 331 (674)
T KOG0922|consen 279 RERAKSLPED---------------------------CPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLT 331 (674)
T ss_pred HHHhhhcccc---------------------------CcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEE
Confidence 6543322111 1112678999999999999999999999999999999999999
Q ss_pred CCccEEEEec----ceeecCCCCcC----cCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhC--CCccc
Q 000114 1675 LTAHLVVVMG----TQYYDGQENAH----TDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYD--AFPVE 1744 (2158)
Q Consensus 1675 lp~~~vVI~g----t~~yd~~~~~~----~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~--~~piE 1744 (2158)
+|++.+||-. ...|+++.+.. +|.|..+..||.|||||. +.|+|+-++... .|.++... |+.-.
T Consensus 332 I~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt---~pGkcyRLYte~---~~~~~~~~~~PEI~R 405 (674)
T KOG0922|consen 332 IDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT---GPGKCYRLYTES---AYDKMPLQTVPEIQR 405 (674)
T ss_pred ecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC---CCceEEEeeeHH---HHhhcccCCCCceee
Confidence 9999999932 46788886654 578999999999999996 599999999874 45777654 55556
Q ss_pred cchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEc
Q 000114 1745 SHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIE 1824 (2158)
Q Consensus 1745 S~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~ 1824 (2158)
++|...+. ...+-.+. |.+++.|+ ..|+ .+.+..||..|...|+|.
T Consensus 406 ~~Ls~~vL-----~Lkalgi~------d~l~F~f~-----d~P~----------------~~~l~~AL~~L~~lgald-- 451 (674)
T KOG0922|consen 406 VNLSSAVL-----QLKALGIN------DPLRFPFI-----DPPP----------------PEALEEALEELYSLGALD-- 451 (674)
T ss_pred echHHHHH-----HHHhcCCC------CcccCCCC-----CCCC----------------hHHHHHHHHHHHhcCccc--
Confidence 66643332 11122222 23444443 3333 267889999999999994
Q ss_pred CCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchH
Q 000114 1825 EDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEE 1884 (2158)
Q Consensus 1825 ~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~ 1884 (2158)
+++.++.+ +|..+|.+++.+...+++..+-...+. .+++.+.|.-+ -.++-.|+.+.
T Consensus 452 ~~g~lt~p-~G~~ma~~Pl~p~lsk~ll~s~~~gc~-~e~l~i~a~Ls-v~~~f~~p~~~ 508 (674)
T KOG0922|consen 452 DRGKLTSP-LGRQMAELPLEPHLSKMLLKSSELGCS-EEILTIAAMLS-VQSVFSRPKDK 508 (674)
T ss_pred CcCCcCch-HHhhhhhcCCCcchhhhhhhccccCCc-chhhhheeeee-ccceecCccch
Confidence 44445443 999999999999999999986555554 67777776544 44555555443
No 154
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=1.3e-26 Score=301.61 Aligned_cols=313 Identities=18% Similarity=0.193 Sum_probs=202.4
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
..|+++|.++++.++.+ ++.+++||||+|||+++...+ +.+.. ...+ +++|++||++|+.|+.++++ .|.....
T Consensus 113 ~~~r~~Q~~av~~~l~~-~~~il~apTGsGKT~i~~~l~-~~~~~-~~~~--~vLilvpt~eL~~Q~~~~l~-~~~~~~~ 186 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKN-NRRLLNLPTSAGKSLIQYLLS-RYYLE-NYEG--KVLIIVPTTSLVTQMIDDFV-DYRLFPR 186 (501)
T ss_pred CCCCHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHH-HHHHh-cCCC--eEEEEECcHHHHHHHHHHHH-Hhccccc
Confidence 58999999999999874 458999999999999875433 33222 2233 89999999999999999998 4543323
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcC
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
..+..+.|+.... ..++|+|+||+++.... ...++++++||+||||++.+ ..++.++.. ++
T Consensus 187 ~~~~~i~~g~~~~----~~~~I~VaT~qsl~~~~-----~~~~~~~~~iIvDEaH~~~~---~~~~~il~~-------~~ 247 (501)
T PHA02558 187 EAMHKIYSGTAKD----TDAPIVVSTWQSAVKQP-----KEWFDQFGMVIVDECHLFTG---KSLTSIITK-------LD 247 (501)
T ss_pred cceeEEecCcccC----CCCCEEEeeHHHHhhch-----hhhccccCEEEEEchhcccc---hhHHHHHHh-------hh
Confidence 3444444443322 35799999999875432 22468899999999999864 234433332 23
Q ss_pred CCceEEEeccCCCChHH----HHHHhccCCCceEec---CCCCcccccEEEE--ecccc--------cchHHHHH--hcC
Q 000114 1500 NKIRIVALSTSLANAKD----LGEWIGATSHGLFNF---PPGVRPVPLEIHI--QGVDI--------TNFEARMQ--AMT 1560 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~d----l~~wl~~~~~~i~~f---~~~~rpv~l~~~i--~~~~~--------~~~~~~~~--~~~ 1560 (2158)
+..+++|||||+.+... +..++|.....+ .. .......+..+.. ..++. ..+..... ...
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v-~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 326 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLFGDIFKPV-TTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSH 326 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhhCCceEEe-cHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhcc
Confidence 45678999999975321 222333211000 00 0000001111110 00110 01111110 000
Q ss_pred ----hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccE
Q 000114 1561 ----KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2158)
Q Consensus 1561 ----k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv 1636 (2158)
......+......+++++|||.+.++|+.++..|.. .+..+
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~-----------------------------------~g~~v 371 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKK-----------------------------------VYDKV 371 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHH-----------------------------------cCCCE
Confidence 011111222224567899999999999888866532 23468
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCceEEEec-CccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMS-SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1637 ~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT-~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
..+||+|+.++|..+++.|++|...||||| +.+++|+|+|.+.+||.. ..+.+...|+||+||++|.+
T Consensus 372 ~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~----------~p~~s~~~~~QriGR~~R~~- 440 (501)
T PHA02558 372 YYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFA----------HPSKSKIIVLQSIGRVLRKH- 440 (501)
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEe----------cCCcchhhhhhhhhccccCC-
Confidence 999999999999999999999999999998 899999999999999832 22336788999999999987
Q ss_pred CCceEEEEE
Q 000114 1716 DNSGKCVIL 1724 (2158)
Q Consensus 1716 d~~G~~iil 1724 (2158)
+++..|.++
T Consensus 441 ~~K~~~~i~ 449 (501)
T PHA02558 441 GSKSIATVW 449 (501)
T ss_pred CCCceEEEE
Confidence 444455555
No 155
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=6.2e-27 Score=291.64 Aligned_cols=366 Identities=26% Similarity=0.396 Sum_probs=237.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|..||.+.+.. ...++.++|+|||.+|||.+-..+|-..+.... .--+||++|+++|+.|...++..++
T Consensus 511 ~Pd~WQ~elLDs-vDr~eSavIVAPTSaGKTfisfY~iEKVLResD---------~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDS-VDRNESAVIVAPTSAGKTFISFYAIEKVLRESD---------SDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhh-hhcccceEEEeeccCCceeccHHHHHHHHhhcC---------CCEEEEecchHHHhhhhhHHHHHhh
Confidence 578899999885 466677999999999999998888877776542 3379999999999999999998888
Q ss_pred ccCC-cEEEEEeCCCccCHhh-hccccEEEcchhHHHHHHhc-cCCCccccccceEEeeccccccc-CChhhHHHHHHHH
Q 000114 575 QMYD-VKVRELSGDQTLTRQQ-IEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (2158)
Q Consensus 575 ~~~g-i~v~~l~Gd~~~~~~~-~~~~~IiV~TPekld~l~r~-~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~ 650 (2158)
.... .+-..+.|+...+-+. .-+++|+||-||.++.+.-. .....+..+++++|+||+|+++. +.|..+|.++..
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l- 659 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL- 659 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-
Confidence 4221 2223344444332221 12799999999999766654 22346889999999999999988 577777766543
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccc-----cCceEEecCCc---------------------------ccc
Q 000114 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL-----EKGLFYFDNSY---------------------------RPV 698 (2158)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~-----~~~~~~f~~~~---------------------------rpv 698 (2158)
..+.++++|||+.|+..+..|+.... ......+...+ |.+
T Consensus 660 --------i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai 731 (1330)
T KOG0949|consen 660 --------IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAI 731 (1330)
T ss_pred --------cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhc
Confidence 36889999999999999999997210 00011111100 000
Q ss_pred cc----------eeEEEeeccC----------------------------ChhHH--------HHHh-------------
Q 000114 699 PL----------SQQYIGIQVK----------------------------KPLQR--------FQLM------------- 719 (2158)
Q Consensus 699 ~l----------~~~~~~~~~~----------------------------~~~~~--------~~~l------------- 719 (2158)
.. ...+..+... ..... .+.+
T Consensus 732 ~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~ 811 (1330)
T KOG0949|consen 732 IVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYV 811 (1330)
T ss_pred cchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHH
Confidence 00 0000000000 00000 0000
Q ss_pred h-------------------HHHHHHHHH----HhC--CCeEEEEecChHHHHHHHHHHHHHhhcccc------------
Q 000114 720 N-------------------DLCYEKVVA----VAG--KHQVLIFVHSRKETAKTARAIRDTALENDT------------ 762 (2158)
Q Consensus 720 ~-------------------~~~~~~i~~----~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~------------ 762 (2158)
+ +.+.+.+.. ... .-|+|+|-..|..|+++|..........+.
T Consensus 812 ~ki~~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~k 891 (1330)
T KOG0949|consen 812 YKLQTKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMK 891 (1330)
T ss_pred HHhhhhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0 000011111 111 348999999998888776654322110000
Q ss_pred ------------cccccc------------------------cCch-hHHHHHhhhhc--cCcchhhhhccCCeEEecCC
Q 000114 763 ------------LGRFLK------------------------EDSV-SREILQSHTDM--VKSNDLKDLLPYGFAIHHAG 803 (2158)
Q Consensus 763 ------------~~~~~~------------------------~~~~-~~~~l~~~~~~--~~~~~l~~ll~~gv~~hHag 803 (2158)
...+.+ .... ....+..+... -.+..+.+++-+|+|+||||
T Consensus 892 k~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHag 971 (1330)
T KOG0949|consen 892 KEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAG 971 (1330)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccc
Confidence 000000 0000 00001111111 13445677888999999999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEE
Q 000114 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2158)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2158)
|.+..|..||-+|+.|++.||+||.||+-|||.|..+||+-|+. -.+++..|.||+|||||.|||..|.++
T Consensus 972 lNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs---------LQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 972 LNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS---------LQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred cchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccc---------cccCchhHHhhhccccccccccccceE
Confidence 99999999999999999999999999999999999999997542 346778899999999999999999988
Q ss_pred EEcCC
Q 000114 884 IITGH 888 (2158)
Q Consensus 884 il~~~ 888 (2158)
.+--+
T Consensus 1043 FmgiP 1047 (1330)
T KOG0949|consen 1043 FMGIP 1047 (1330)
T ss_pred EEeCc
Confidence 77544
No 156
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.95 E-value=1.3e-26 Score=309.16 Aligned_cols=370 Identities=21% Similarity=0.209 Sum_probs=240.2
Q ss_pred CCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 495 QLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
.||+.|.++++.+..+ ..+++++||||||||.+|+.++...+..+ .+++|++|+++|+.|++++|++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-----------~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-----------KQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHHHHHHHHH
Confidence 5899999999999874 56799999999999999999888777542 3799999999999999999998
Q ss_pred hcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc--CChhhH
Q 000114 573 RLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVL 643 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d--~rg~~l 643 (2158)
.+ |.++..++|+.+...+. ....+|+|+|+..+ ...+.++++|||||+|.... ..++.+
T Consensus 213 ~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal---------~~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 213 RF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL---------FLPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred Hh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh---------cccccCCCEEEEECCCccccccCcCCCC
Confidence 65 56899999987654332 23579999999853 13467899999999997643 234433
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccc-eeEEEeeccCChhHHHHHhhHH
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPL-SQQYIGIQVKKPLQRFQLMNDL 722 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l-~~~~~~~~~~~~~~~~~~l~~~ 722 (2158)
.. |-....+....+.++|++||| |..+........ ..........+...++ ...++.............+...
T Consensus 281 ~~---r~va~~ra~~~~~~~il~SAT-ps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~ 354 (679)
T PRK05580 281 HA---RDLAVVRAKLENIPVVLGSAT-PSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPP 354 (679)
T ss_pred cH---HHHHHHHhhccCCCEEEEcCC-CCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHH
Confidence 21 111111224568899999999 444433332211 1112222322211111 2233332221000000124455
Q ss_pred HHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHH----------HHhhhhccC------
Q 000114 723 CYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI----------LQSHTDMVK------ 785 (2158)
Q Consensus 723 ~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~----------l~~~~~~~~------ 785 (2158)
+++.+.+... ++|+|||+|+|..+..+...-+.....+......+..+...... ....+..|.
T Consensus 355 l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~ 434 (679)
T PRK05580 355 LLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVP 434 (679)
T ss_pred HHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEE
Confidence 6666666655 56999999999877666555554333222111111000000000 000011110
Q ss_pred --------cchhhhhcc-CCeEEecCCCCH--HHHHHHHHHHhCCCceEEEechhhhhccCCCceEEE--EecccccCCC
Q 000114 786 --------SNDLKDLLP-YGFAIHHAGMTR--GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI--IKGTQIYNPE 852 (2158)
Q Consensus 786 --------~~~l~~ll~-~gv~~hHagl~~--~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV--I~~~~~yd~~ 852 (2158)
.+.|+..++ ..|...|+++.+ .+++.+++.|++|+++|||+|+++++|+|+|++++| ++.+.+.+.+
T Consensus 435 ~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~p 514 (679)
T PRK05580 435 VGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSP 514 (679)
T ss_pred eeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCC
Confidence 123444433 578888999874 678999999999999999999999999999999987 5556666655
Q ss_pred CCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 853 KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 853 ~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
..+..+-..+.|+|++|||||.+ ..|.+++.|...+...+.
T Consensus 515 dfra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred ccchHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCCCCHHHH
Confidence 55555666889999999999965 679999999887644433
No 157
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.5e-26 Score=274.73 Aligned_cols=446 Identities=17% Similarity=0.179 Sum_probs=318.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000114 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (2158)
Q Consensus 1344 ~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~ 1423 (2158)
++-.+.+.++ +.+..+||.|.||||||...-..+... . -.+++.++-+..|+|.-|..++.++.+.++..+|..|+
T Consensus 268 ~ykdell~av-~e~QVLiI~GeTGSGKTTQiPQyL~Ea--G-ytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 268 PYKDELLKAV-KEHQVLIIVGETGSGKTTQIPQYLYEA--G-YTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred hhHHHHHHHH-HhCcEEEEEcCCCCCccccccHHHHhc--c-cccCCceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 3444555555 446779999999999996543333221 1 12233358899999999999999998888766666654
Q ss_pred EEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCce
Q 000114 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2158)
Q Consensus 1424 ~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~r 1503 (2158)
.-.. .....-.+.-|-++|.+. ++|.+.....+.+.+++||||||. +.-....++..++.|... .++.+
T Consensus 344 YsIR---FEdcTSekTvlKYMTDGm---LlREfL~epdLasYSViiiDEAHE----RTL~TDILfgLvKDIar~-RpdLK 412 (902)
T KOG0923|consen 344 YSIR---FEDCTSEKTVLKYMTDGM---LLREFLSEPDLASYSVIIVDEAHE----RTLHTDILFGLVKDIARF-RPDLK 412 (902)
T ss_pred eEEE---eccccCcceeeeeecchh---HHHHHhccccccceeEEEeehhhh----hhhhhhHHHHHHHHHHhh-CCcce
Confidence 3221 011112355788999997 456666677899999999999993 323344566677777665 56999
Q ss_pred EEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHH---HhHhcCCCEEEE
Q 000114 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIV---QHAKNEKPALVF 1580 (2158)
Q Consensus 1504 iV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~---~~~~~~~~~IVF 1580 (2158)
++..|||+ +++.+..|++..+ +|.++. |..|+.+++...+..++... ++..+. .. .+.+.+|||
T Consensus 413 llIsSAT~-DAekFS~fFDdap--IF~iPG--RRyPVdi~Yt~~PEAdYldA-------ai~tVlqIH~t-qp~GDILVF 479 (902)
T KOG0923|consen 413 LLISSATM-DAEKFSAFFDDAP--IFRIPG--RRYPVDIFYTKAPEADYLDA-------AIVTVLQIHLT-QPLGDILVF 479 (902)
T ss_pred EEeecccc-CHHHHHHhccCCc--EEeccC--cccceeeecccCCchhHHHH-------HHhhheeeEec-cCCccEEEE
Confidence 99999998 8999999998764 777655 55566677666555554332 122222 22 567889999
Q ss_pred ecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCc
Q 000114 1581 VPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI 1660 (2158)
Q Consensus 1581 v~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i 1660 (2158)
....+..+.+...|...+..-+...+ ..-|..+|++|+.+.+..|++.-..|..
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~--------------------------eliv~PiYaNLPselQakIFePtP~gaR 533 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIR--------------------------ELIVLPIYANLPSELQAKIFEPTPPGAR 533 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccc--------------------------eEEEeeccccCChHHHHhhcCCCCCCce
Confidence 99999887777666544432222111 1127899999999999999999999999
Q ss_pred eEEEecCccccccCCCccEEEEec----ceeecCCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHH
Q 000114 1661 KVCVMSSSMCWGVPLTAHLVVVMG----TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2158)
Q Consensus 1661 ~VLVaT~~la~Gvdlp~~~vVI~g----t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~ 1732 (2158)
+|++||++++.++.++++.+||-. ...|+++++. -.|+|..+..||+|||||.| .|+|+-++.. ..
T Consensus 534 KVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~---~a 607 (902)
T KOG0923|consen 534 KVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTA---WA 607 (902)
T ss_pred eEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeech---hh
Confidence 999999999999999999999932 2457777554 45889999999999999975 9999999986 56
Q ss_pred HHHHhhC---CCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHH
Q 000114 1733 YKKFLYD---AFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVE 1809 (2158)
Q Consensus 1733 ~~k~l~~---~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve 1809 (2158)
|...|.. |+....+|.. .+..--+.| |. |.+.+.|+ ..|.. +.+.
T Consensus 608 Y~~eLE~~t~PEIqRtnL~n----vVL~LkSLG-I~------Dl~~FdFm-----DpPp~----------------etL~ 655 (902)
T KOG0923|consen 608 YEHELEEMTVPEIQRTNLGN----VVLLLKSLG-IH------DLIHFDFL-----DPPPT----------------ETLL 655 (902)
T ss_pred hhhhhccCCCcceeeccchh----HHHHHHhcC-cc------hhcccccC-----CCCCh----------------HHHH
Confidence 7777653 4444455533 222222333 22 33444443 34443 6778
Q ss_pred HHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHH
Q 000114 1810 NTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEV 1886 (2158)
Q Consensus 1810 ~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~ 1886 (2158)
.+|..|...|++ +.....|.+|+.||.|+++|...+++..+-+.+++ .+++.|.|+.+.+..+.-|+.+...
T Consensus 656 ~aLE~LyaLGAL----n~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrpk~~~v 727 (902)
T KOG0923|consen 656 KALEQLYALGAL----NHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRPKDKQV 727 (902)
T ss_pred HHHHHHHHhhcc----ccccchhhhhhhhhhcCCCHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecchhhhh
Confidence 899999999998 33467888999999999999999999987666655 7899999999999999889887644
No 158
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.95 E-value=8.8e-27 Score=262.89 Aligned_cols=339 Identities=19% Similarity=0.287 Sum_probs=250.5
Q ss_pred CCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 000114 1318 DLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2158)
Q Consensus 1318 dl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia 1397 (2158)
+-..+|++.-....+.+.|. ...|+|.|..++++.+.+.+ +++..|||.||++||.||.+ ...| -+++|+
T Consensus 72 dkd~fpws~e~~~ilk~~f~-lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal------~adg--~alvi~ 141 (695)
T KOG0353|consen 72 DKDDFPWSDEAKDILKEQFH-LEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPAL------CADG--FALVIC 141 (695)
T ss_pred ccCCCCCchHHHHHHHHHhh-HHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHH------hcCC--ceEeec
Confidence 34556777666677788777 88999999999999998776 99999999999999999998 2355 799999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh-hh-----c---ccCCcEEEeCHHHHHH---HHhhhhccccccce
Q 000114 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LK-----L---LEKGQIIISTPEKWDA---LSRRWKQRKYVQQV 1465 (2158)
Q Consensus 1398 P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~-~~-----~---l~~~~IIV~TPe~l~~---l~r~~~~~~~l~~v 1465 (2158)
|..+|+.++.-.++ .+ |+....+....+.. .+ . -..-.+|+.|||++.. ++.+.........+
T Consensus 142 plislmedqil~lk-ql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~ 216 (695)
T KOG0353|consen 142 PLISLMEDQILQLK-QL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF 216 (695)
T ss_pred hhHHHHHHHHHHHH-Hh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee
Confidence 99999999888887 33 56666665544433 11 1 1123799999999853 33333333456678
Q ss_pred eEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCcccccEEE
Q 000114 1466 SLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1543 (2158)
Q Consensus 1466 ~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~ 1543 (2158)
.++-|||+|+.. .+|+.++.-++-+.-+.+|+ ++..++||+||..| ..|..+.|+... .|.|...+....+...
T Consensus 217 ~~iaidevhccs-qwghdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~--~~tf~a~fnr~nl~ye 292 (695)
T KOG0353|consen 217 KLIAIDEVHCCS-QWGHDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEA--AFTFRAGFNRPNLKYE 292 (695)
T ss_pred EEEeecceeehh-hhCcccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHh--hheeecccCCCCceeE
Confidence 999999999986 55677776666666666665 47899999999887 466777777664 3445554443344444
Q ss_pred EecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhh
Q 000114 1544 IQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI 1623 (2158)
Q Consensus 1544 i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i 1623 (2158)
+..-+... .. ........|... -.+...||||-|++.|+.++..|..
T Consensus 293 v~qkp~n~--dd---~~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn--------------------------- 339 (695)
T KOG0353|consen 293 VRQKPGNE--DD---CIEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKN--------------------------- 339 (695)
T ss_pred eeeCCCCh--HH---HHHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHh---------------------------
Confidence 43322211 10 011122222222 3466799999999999999976632
Q ss_pred hHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHH
Q 000114 1624 QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDL 1703 (2158)
Q Consensus 1624 ~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~ 1703 (2158)
.+...+.||+.|.+++|.-+.+.+..|+|+|+|||-.+++|||-|++++|| |...|.|+..|
T Consensus 340 --------~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvi----------hhsl~ksieny 401 (695)
T KOG0353|consen 340 --------HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVI----------HHSLPKSIENY 401 (695)
T ss_pred --------cCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEE----------ecccchhHHHH
Confidence 344468899999999999999999999999999999999999999999999 77889999999
Q ss_pred HH-------------------------------------------hhccCCCCCCCCceEEEEEecCC
Q 000114 1704 LQ-------------------------------------------MMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1704 lQ-------------------------------------------r~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
.| ..|||||.+ ..+.|++++.-.
T Consensus 402 yqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~~ 467 (695)
T KOG0353|consen 402 YQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGFA 467 (695)
T ss_pred HHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEEechH
Confidence 99 789999974 678888877543
No 159
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.94 E-value=8.7e-26 Score=301.12 Aligned_cols=399 Identities=18% Similarity=0.184 Sum_probs=249.8
Q ss_pred CCCCHHHHHHHHHHhcC--CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1340 KHFNPIQTQVFTVLYNT--DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~--~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
..+++.|.++++.+.++ ..++++.||||||||.+|+.++...+.. ++ +++|++|+++|+.|+++++++.|+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~--~vLvLvPt~~L~~Q~~~~l~~~fg-- 215 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GK--QALVLVPEIALTPQMLARFRARFG-- 215 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHhC--
Confidence 36999999999999874 5679999999999999998888777654 44 899999999999999999997764
Q ss_pred CCcEEEEEcCCcchhhh-----cc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC--CCChHHH-H
Q 000114 1418 LGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--GGPVLEV-I 1487 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~--~g~~~e~-~ 1487 (2158)
.++..++|+.+...+ .+ ...+|+|+||..+. ..+++++++||||+|..+-. .++.+.. -
T Consensus 216 --~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 216 --APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred --CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 578899998765422 11 24599999997642 34788999999999976532 3444321 1
Q ss_pred HHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCC--cccccEEEEecccccchHHHHHhcChHHHH
Q 000114 1488 VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~--rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~ 1565 (2158)
+..++. ...+.++|++|||++ .+.+..-. ......+...... ++.| .+.+..............+....+.
T Consensus 285 va~~ra----~~~~~~~il~SATps-~~s~~~~~-~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~ 357 (679)
T PRK05580 285 LAVVRA----KLENIPVVLGSATPS-LESLANAQ-QGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLE 357 (679)
T ss_pred HHHHHh----hccCCCEEEEcCCCC-HHHHHHHh-ccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHH
Confidence 111111 135789999999953 33332221 1111222222211 1122 2222221110000000124566777
Q ss_pred HHHHhHhcCCCEEEEecChHHHHHHHHHHHh------------------------hcccCCcccccccCCCcccchh---
Q 000114 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMT------------------------YSSMDGDQKSAFLLWPAEEVEP--- 1618 (2158)
Q Consensus 1566 ~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~------------------------~~~~~~~~~~~~l~~~~~~l~~--- 1618 (2158)
.+.+.+..++++|||+|+|..+-.+...-|. +|.........+..|....+..
T Consensus 358 ~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~ 437 (679)
T PRK05580 358 AIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGP 437 (679)
T ss_pred HHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeec
Confidence 8888888899999999987644322221111 1111111111122222222222
Q ss_pred hHhhhhHHHHHHHhcccEEEecCCCC--HHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEE-ecceee--cCCCC
Q 000114 1619 FIDNIQEEMLKATLRHGVGYLHEGLN--KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQYY--DGQEN 1693 (2158)
Q Consensus 1619 ~~~~i~d~~L~~~l~~gv~~~H~~l~--~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI-~gt~~y--d~~~~ 1693 (2158)
-.+++.+..-+.+.+..|..+|+++. ..+++.+++.|++|+++|||+|+.+++|+|+|++.+|+ .+.... .+.-
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdf- 516 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDF- 516 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCcc-
Confidence 23444444333334568999999986 46789999999999999999999999999999988664 322110 0000
Q ss_pred cCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHH
Q 000114 1694 AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDY 1773 (2158)
Q Consensus 1694 ~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~ 1773 (2158)
+........|+|++|||||.+ ..|.+++.+..++...++.... +|--.|
T Consensus 517 ra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p~~~~~~~~~~-----------------------------~d~~~f 565 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHPEHPVIQALLA-----------------------------QDYDAF 565 (679)
T ss_pred chHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCCCCHHHHHHHh-----------------------------CCHHHH
Confidence 000012578999999999964 7899999998876444432221 122234
Q ss_pred HHHhhhhhhhccCCCCccCCCC
Q 000114 1774 LTWTFMYRRLTQNPNYYNLQGV 1795 (2158)
Q Consensus 1774 l~~t~~yrRl~~nP~~Y~~~~~ 1795 (2158)
+....-.|+....|.|+.+-.+
T Consensus 566 ~~~El~~R~~~~~PPf~~l~~i 587 (679)
T PRK05580 566 AEQELEERRAAGYPPFGRLALL 587 (679)
T ss_pred HHHHHHHHHhcCCCCHHHhhEe
Confidence 4455556777888999877654
No 160
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=2.8e-26 Score=321.91 Aligned_cols=328 Identities=19% Similarity=0.216 Sum_probs=215.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|| +|+++|+++++.++.+.+ ++++||||||||++++++.+.... .+.++|||+||++|+.|+++.+
T Consensus 76 ~G~-~pt~iQ~~~i~~il~G~d-~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILRGKS-FSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHHHHHHHHHHH
Confidence 478 699999999999999865 999999999999976665554322 2348999999999999999999
Q ss_pred HhhcccC--CcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc----
Q 000114 571 SNRLQMY--DVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD---- 637 (2158)
Q Consensus 571 ~~~~~~~--gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d---- 637 (2158)
+.++... ++++..++|+.+...+. ...++|+|+||+.+....... ...++++|||||||++.+
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~~~~i~~iVVDEAD~ml~~~kn 218 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----KHLKFDFIFVDDVDAFLKASKN 218 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----hhCCCCEEEEECceeccccccc
Confidence 9977654 56778888988765432 125899999999862222211 126689999999998864
Q ss_pred --------CChhhHHH----HHH---------------HHHHHHhhcccccc-EEEEccccCChHHHHHHHhccccCceE
Q 000114 638 --------NRGPVLES----IVA---------------RTVRQIETTKEHIR-LVGLSATLPNYEDVALFLRVNLEKGLF 689 (2158)
Q Consensus 638 --------~rg~~le~----iv~---------------r~~~~~~~~~~~~r-iv~lSATlpn~~dv~~~l~~~~~~~~~ 689 (2158)
++.+.+.. ++. ++.......+...+ ++.+|||++...+...+++... .|
T Consensus 219 id~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l---~f 295 (1638)
T PRK14701 219 IDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL---GF 295 (1638)
T ss_pred cchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe---EE
Confidence 34444432 211 11111112233444 5679999987666666664321 12
Q ss_pred EecCCcccc--cceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHH---HHHHHHHHHHhhcccccc
Q 000114 690 YFDNSYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET---AKTARAIRDTALENDTLG 764 (2158)
Q Consensus 690 ~f~~~~rpv--~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~---~~~a~~L~~~~~~~~~~~ 764 (2158)
... ..++. .+.+.++... . ..+ .. +.+ +.... +.++||||+|++.+ +.++..|...++.
T Consensus 296 ~v~-~~~~~lr~i~~~yi~~~--~-~~k-~~----L~~-ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~----- 359 (1638)
T PRK14701 296 EVG-SGRSALRNIVDVYLNPE--K-IIK-EH----VRE-LLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFK----- 359 (1638)
T ss_pred Eec-CCCCCCCCcEEEEEECC--H-HHH-HH----HHH-HHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCe-----
Confidence 222 22221 1222322211 1 111 11 122 22222 46899999998864 7889888876543
Q ss_pred cccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEech----hhhhccCCCc-e
Q 000114 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPA-H 839 (2158)
Q Consensus 765 ~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~----tla~GVdlP~-v 839 (2158)
+..+||+ |..+++.|++|+++|||||+ +++||||+|+ +
T Consensus 360 --------------------------------a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~V 402 (1638)
T PRK14701 360 --------------------------------IELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERI 402 (1638)
T ss_pred --------------------------------EEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCcc
Confidence 4456885 88999999999999999994 8999999999 9
Q ss_pred EEEEecccccCCCCCccccCCHH-------------HHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcC
Q 000114 840 TVIIKGTQIYNPEKGAWTELSPL-------------DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (2158)
Q Consensus 840 ~vVI~~~~~yd~~~g~~~~~s~~-------------~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (2158)
++||+ |+.|+.+ +|+. ..+++.|||||.|. .+.++............+++..
T Consensus 403 ryvi~----~~~Pk~~---~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 403 RFAVF----YGVPKFR---FRVDLEDPTIYRILGLLSEILKIEEELKEGI--PIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CEEEE----eCCCCCC---cchhhcccchhhhhcchHHHHHhhhhcccCC--cchhHHHhHHHHHHHHHHHhcc
Confidence 99999 6666532 2222 34566799999884 4555544444444455555444
No 161
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=5.5e-25 Score=303.82 Aligned_cols=336 Identities=22% Similarity=0.309 Sum_probs=220.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+.-+++++|.+++..++.+ |+|+++|||+|||.+|++++...+.. .+.++|||+|+++|+.|+.+.++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~----------~~~~vLvl~Pt~~L~~Q~~~~~~ 79 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK----------KGGKVLILAPTKPLVEQHAEFFR 79 (773)
T ss_pred CcCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh----------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 3447899999999988876 79999999999999999999887732 12489999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r 649 (2158)
+.++..+.++..++|+...... ...+.+|+|+||+.+...... ....+.++++|||||||++....+ ...+..+
T Consensus 80 ~~~~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~~--~~~i~~~ 155 (773)
T PRK13766 80 KFLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNYA--YVYIAER 155 (773)
T ss_pred HHhCCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCcccccccc--HHHHHHH
Confidence 8776545688899998765442 245789999999987222111 124567899999999998864322 2222222
Q ss_pred HHHHHhhccccccEEEEccccC-ChHHHHHHHhccccCceEEecCCccc----c--cceeEEEeeccCChh---------
Q 000114 650 TVRQIETTKEHIRLVGLSATLP-NYEDVALFLRVNLEKGLFYFDNSYRP----V--PLSQQYIGIQVKKPL--------- 713 (2158)
Q Consensus 650 ~~~~~~~~~~~~riv~lSATlp-n~~dv~~~l~~~~~~~~~~f~~~~rp----v--~l~~~~~~~~~~~~~--------- 713 (2158)
. .......+++|||||+. +.+.+...+..-. ...+.+.+.+.+ . +....++.+......
T Consensus 156 ~----~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~-i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~ 230 (773)
T PRK13766 156 Y----HEDAKNPLVLGLTASPGSDEEKIKEVCENLG-IEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNE 230 (773)
T ss_pred H----HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCC-ceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHH
Confidence 2 22345678999999964 2333333322110 001111111100 0 000000000000000
Q ss_pred -------------------------------HH---------------HH------------------------------
Q 000114 714 -------------------------------QR---------------FQ------------------------------ 717 (2158)
Q Consensus 714 -------------------------------~~---------------~~------------------------------ 717 (2158)
.. ..
T Consensus 231 ~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l 310 (773)
T PRK13766 231 ALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERL 310 (773)
T ss_pred HHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 00 00
Q ss_pred ------------------------Hh---h---------HHHHHHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHhh
Q 000114 718 ------------------------LM---N---------DLCYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTAL 758 (2158)
Q Consensus 718 ------------------------~l---~---------~~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~~ 758 (2158)
.+ . ..+.+.+.+. .+++++||||++++.|..++..|...+.
T Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~ 390 (773)
T PRK13766 311 REEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGI 390 (773)
T ss_pred HhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCC
Confidence 00 0 0000011111 3467999999999999999999976554
Q ss_pred cccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCc
Q 000114 759 ENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA 838 (2158)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~ 838 (2158)
....+ . +.+-..-|+||++.+|..+++.|++|.++|||||+++++|+|+|+
T Consensus 391 ~~~~~---~--------------------------g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~ 441 (773)
T PRK13766 391 KAVRF---V--------------------------GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPS 441 (773)
T ss_pred ceEEE---E--------------------------ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCccc
Confidence 32211 0 000000167899999999999999999999999999999999999
Q ss_pred eEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 839 v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
+++||+ ||++. +...|+||+||+||.| .|.+++++..+.
T Consensus 442 ~~~VI~----yd~~~------s~~r~iQR~GR~gR~~---~~~v~~l~~~~t 480 (773)
T PRK13766 442 VDLVIF----YEPVP------SEIRSIQRKGRTGRQE---EGRVVVLIAKGT 480 (773)
T ss_pred CCEEEE----eCCCC------CHHHHHHHhcccCcCC---CCEEEEEEeCCC
Confidence 999999 77654 7778999999999965 478888877644
No 162
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=7.7e-26 Score=312.26 Aligned_cols=304 Identities=22% Similarity=0.214 Sum_probs=200.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
|+ +|+++|..+++.++.+. +++++||||+|||. |.++++..+.. .+.+++||+||++||.|+++.++
T Consensus 78 G~-~pt~iQ~~~i~~il~g~-dv~i~ApTGsGKT~-f~l~~~~~l~~----------~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGE-SFAIIAPTGVGKTT-FGLVMSLYLAK----------KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCC-cEEEEcCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeccHHHHHHHHHHHH
Confidence 66 89999999999998875 59999999999996 44555444432 24589999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCH---h-h-----hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C---
Q 000114 572 NRLQMYDVKVRELSGDQTLTR---Q-Q-----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N--- 638 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~---~-~-----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~--- 638 (2158)
.++...++.+..++|+..... . . ...++|+|+||+++...... .....+++|||||||.+.+ .
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhhcccch
Confidence 998888888888887765321 1 1 13589999999987332221 2344599999999998875 1
Q ss_pred --------C-hhhHHHHHHHHHH----------------HHhh-ccccccEEEEccccCChHHHHH-HHhccccCceEEe
Q 000114 639 --------R-GPVLESIVARTVR----------------QIET-TKEHIRLVGLSATLPNYEDVAL-FLRVNLEKGLFYF 691 (2158)
Q Consensus 639 --------r-g~~le~iv~r~~~----------------~~~~-~~~~~riv~lSATlpn~~dv~~-~l~~~~~~~~~~f 691 (2158)
+ ...++.++..+.. .+.. .....|++++|||++.. .+.. +++... .|..
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~-~~~~~l~~~ll---~~~v 296 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPR-GNRVKLFRELL---GFEV 296 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCcc-chHHHHhhccc---eEEe
Confidence 2 1344444433311 0000 11267899999998742 1211 222110 1111
Q ss_pred cCC-cccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHHHhhccccccccc
Q 000114 692 DNS-YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKE---TAKTARAIRDTALENDTLGRFL 767 (2158)
Q Consensus 692 ~~~-~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~---~~~~a~~L~~~~~~~~~~~~~~ 767 (2158)
... ...-.+.+.++... .+...+.. +.... +.++||||++++. +..++..|...++.
T Consensus 297 ~~~~~~~rnI~~~yi~~~-----~k~~~L~~-----ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~-------- 357 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE-----DSVEKLVE-----LVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGIN-------- 357 (1176)
T ss_pred cCcccccCCceEEEEEcc-----cHHHHHHH-----HHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCc--------
Confidence 111 11112333333222 11111211 22222 4689999999887 99999999876543
Q ss_pred ccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEe----chhhhhccCCCc-eEEE
Q 000114 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVI 842 (2158)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vV 842 (2158)
++..||+| +| .++.|++|+++|||| |++++||+|+|+ +++|
T Consensus 358 -----------------------------v~~~hg~l---~~--~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 358 -----------------------------AELAISGF---ER--KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred -----------------------------EEEEeCcH---HH--HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEE
Confidence 45569999 22 349999999999999 689999999999 8999
Q ss_pred EecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 843 I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
|+ |+.|+.++.---...+.||+||+-+
T Consensus 404 I~----y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 404 IF----YGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EE----eCCCCEEEeccccccCHHHHHHHHh
Confidence 99 6666533222123468999999864
No 163
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.94 E-value=2e-25 Score=282.41 Aligned_cols=341 Identities=19% Similarity=0.270 Sum_probs=221.5
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1336 YQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1336 ~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
|...-.++.+|.+....++ +.|+||++|||+|||++|...+++++.. .+++ |+|+++|++-|+.|+...++ .++
T Consensus 57 ~p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw-~p~~--KiVF~aP~~pLv~QQ~a~~~-~~~ 130 (746)
T KOG0354|consen 57 YPTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEW-RPKG--KVVFLAPTRPLVNQQIACFS-IYL 130 (746)
T ss_pred ccCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhc-CCcc--eEEEeeCCchHHHHHHHHHh-hcc
Confidence 3445689999999999988 6789999999999999999999999988 4556 99999999999999997776 444
Q ss_pred CCCCcEEEEEcCCcc-hh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHH
Q 000114 1416 QGLGMRVVELTGETA-MD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~-~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~ 1492 (2158)
. +..+....||.. .. .......+|+|+||+.+.+-+..-... .++.+.++||||||+-. +.+.|..++..+.
T Consensus 131 ~--~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~-~ls~fs~iv~DE~Hra~--kn~~Y~~Vmr~~l 205 (746)
T KOG0354|consen 131 I--PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHD-ELSDFSLIVFDECHRTS--KNHPYNNIMREYL 205 (746)
T ss_pred C--cccceeeccCccCCCchhhhhcccceEEeChHhhhhhccccccc-ccceEEEEEEccccccc--ccccHHHHHHHHH
Confidence 3 245555555533 22 345566799999999987666543322 27899999999999864 3455666665444
Q ss_pred HHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCce-----------EecCCCC--cccccEEEE--------------
Q 000114 1493 YIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGL-----------FNFPPGV--RPVPLEIHI-------------- 1544 (2158)
Q Consensus 1493 ~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i-----------~~f~~~~--rpv~l~~~i-------------- 1544 (2158)
.... ...||+|||||+++ ...+.+.+..--..+ +...-.. -|+++....
T Consensus 206 ~~k~---~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~ 282 (746)
T KOG0354|consen 206 DLKN---QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPL 282 (746)
T ss_pred Hhhh---ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHH
Confidence 4332 23499999999986 334443332211000 0000000 111110000
Q ss_pred -------------------------------ecccccch---HH---HH-------------------------------
Q 000114 1545 -------------------------------QGVDITNF---EA---RM------------------------------- 1556 (2158)
Q Consensus 1545 -------------------------------~~~~~~~~---~~---~~------------------------------- 1556 (2158)
.++..... .. +.
T Consensus 283 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k 362 (746)
T KOG0354|consen 283 LQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKK 362 (746)
T ss_pred HHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhH
Confidence 00000000 00 00
Q ss_pred ---------------HhcC------------hHHHHHHH----Hh--HhcCCCEEEEecChHHHHHHHHHHHhhcccCCc
Q 000114 1557 ---------------QAMT------------KPTFTAIV----QH--AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2158)
Q Consensus 1557 ---------------~~~~------------k~~~~~i~----~~--~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~ 1603 (2158)
..|. .+.+..+. .+ ..+..++||||.+|..|..+-..|.. ....+.
T Consensus 363 ~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~-~~~~~i 441 (746)
T KOG0354|consen 363 YLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQ-LHELGI 441 (746)
T ss_pred HHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHh-hhhccc
Confidence 0000 00011111 01 02345799999999999888877653 111111
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEe
Q 000114 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2158)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~ 1683 (2158)
... .+.+.|-+.--.||++.++..+++.|++|.++|||||++++.|+|++.+.+||
T Consensus 442 r~~-----------------------~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVI- 497 (746)
T KOG0354|consen 442 KAE-----------------------IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVI- 497 (746)
T ss_pred ccc-----------------------eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEE-
Confidence 111 11233333333799999999999999999999999999999999999999999
Q ss_pred cceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
.||.. -++...+||+|| ||. +.|+|++++...
T Consensus 498 ---cYd~~------snpIrmIQrrGR-gRa---~ns~~vll~t~~ 529 (746)
T KOG0354|consen 498 ---CYDYS------SNPIRMVQRRGR-GRA---RNSKCVLLTTGS 529 (746)
T ss_pred ---EecCC------ccHHHHHHHhcc-ccc---cCCeEEEEEcch
Confidence 45543 368899999999 995 689999998854
No 164
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=5.2e-26 Score=301.62 Aligned_cols=328 Identities=23% Similarity=0.260 Sum_probs=247.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|.+.|++-|.+|+...+.|.+ ++|.+|||+||++||.+|++-. +...|+|.|..+|++.+...+
T Consensus 260 Fg~~~FR~~Q~eaI~~~l~Gkd-~fvlmpTG~GKSLCYQlPA~l~--------------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINATLSGKD-CFVLMPTGGGKSLCYQLPALLL--------------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred hccccCChhHHHHHHHHHcCCc-eEEEeecCCceeeEeecccccc--------------CCceEEeccHHHHHHHHHHhh
Confidence 5899999999999998888876 9999999999999999998643 126899999999999999887
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh-------hc--cccEEEcchhHHH---HHHhccCCCccccccceEEeeccccccc-
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IE--ETQIIVTTPEKWD---IITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~--~~~IiV~TPekld---~l~r~~~~~~~l~~v~lIIiDEaH~l~d- 637 (2158)
.. .+|....++|+.....+. .+ ..+|+..|||++- .+.+..........+.++||||||++..
T Consensus 325 ~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 43 478899999887764321 12 5789999999862 2222221111222388999999999854
Q ss_pred --CChhhHHHHHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChh
Q 000114 638 --NRGPVLESIVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 638 --~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp--n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
++.|.+..+..-. ...+.+.+++||||.. -.+||.+-|+... + ..+..+|.+..+...+..-....
T Consensus 401 gHdFRp~Yk~l~~l~-----~~~~~vP~iALTATAT~~v~~DIi~~L~l~~--~-~~~~~sfnR~NL~yeV~~k~~~~-- 470 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLR-----IRFPGVPFIALTATATERVREDVIRSLGLRN--P-ELFKSSFNRPNLKYEVSPKTDKD-- 470 (941)
T ss_pred cccccHHHHHHHHHH-----hhCCCCCeEEeehhccHHHHHHHHHHhCCCC--c-ceecccCCCCCceEEEEeccCcc--
Confidence 4556655443211 1234589999999974 3578888887642 2 25666776666665544222111
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
....+...+........+||+|.+|++|+.++..|+..+..
T Consensus 471 -----~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~---------------------------------- 511 (941)
T KOG0351|consen 471 -----ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKS---------------------------------- 511 (941)
T ss_pred -----chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchh----------------------------------
Confidence 01112333444555789999999999999999999987633
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
.+++||||+..+|..|.+.|-.++++|+|||=++++|||.|+|+.||+ |+.|+ |...|.|-+|||||
T Consensus 512 ---a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH----~~lPk------s~E~YYQE~GRAGR 578 (941)
T KOG0351|consen 512 ---AAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH----YSLPK------SFEGYYQEAGRAGR 578 (941)
T ss_pred ---hHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE----CCCch------hHHHHHHhccccCc
Confidence 245699999999999999999999999999999999999999999999 77666 88899999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHHHHhhcCC
Q 000114 874 PQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (2158)
.|. ...|++++...+......++...
T Consensus 579 DG~--~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 579 DGL--PSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CCC--cceeEEecchhHHHHHHHHHHcc
Confidence 994 58899999998877777666544
No 165
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=4.6e-25 Score=286.18 Aligned_cols=323 Identities=16% Similarity=0.191 Sum_probs=204.4
Q ss_pred CCCCHHHHHHHHHHHcCC--CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSALSSA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
..|+|+|.+++..++..+ .+.++++|||+|||++++.++... . .++|||||+..|+.|+.++|.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-~-------------k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-K-------------KSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-C-------------CCEEEEeCcHHHHHHHHHHHH
Confidence 478999999999988644 368999999999999998665432 1 159999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCC----Cccc--cccceEEeecccccccCChhhHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGD----RTYT--QLVKLLIIDEIHLLHDNRGPVLES 645 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~----~~~l--~~v~lIIiDEaH~l~d~rg~~le~ 645 (2158)
+++......+..++|+.... ......|+|+|+..+....++... ...+ ...++||+||||++.. +.+..
T Consensus 320 ~~~~l~~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~ 394 (732)
T TIGR00603 320 MWSTIDDSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRR 394 (732)
T ss_pred HhcCCCCceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHH
Confidence 87644445778888864321 123478999999864322111100 0112 3578999999999842 23333
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec-------CCcccccceeEEEeeccC--------
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-------NSYRPVPLSQQYIGIQVK-------- 710 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~-------~~~rpv~l~~~~~~~~~~-------- 710 (2158)
++..+ .....+|||||+...++...-+.......++... ...-++......+.....
T Consensus 395 il~~l--------~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~ 466 (732)
T TIGR00603 395 VLTIV--------QAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRE 466 (732)
T ss_pred HHHhc--------CcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHh
Confidence 33221 2335699999976322211111110011111110 001111111111111110
Q ss_pred --ChhHHHHHhhHHHHHH---HHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhc
Q 000114 711 --KPLQRFQLMNDLCYEK---VVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (2158)
Q Consensus 711 --~~~~~~~~l~~~~~~~---i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 783 (2158)
.....+..++..-+.. +.... .+.++||||.+...+..++..|
T Consensus 467 ~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L------------------------------ 516 (732)
T TIGR00603 467 NSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL------------------------------ 516 (732)
T ss_pred cchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc------------------------------
Confidence 0001112232221221 22222 4679999999988877776654
Q ss_pred cCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCC-CceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHH
Q 000114 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG-HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2158)
Q Consensus 784 ~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g-~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2158)
|+.+.||+++..+|..+++.|++| .+++||+|.++.+|||+|++++||+ ++++.| |..
T Consensus 517 ------------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~~~g-----S~~ 575 (732)
T TIGR00603 517 ------------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISSHYG-----SRR 575 (732)
T ss_pred ------------CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCCCCC-----CHH
Confidence 123459999999999999999875 8899999999999999999999998 665433 788
Q ss_pred HHHHhhcccCCCCCCCc-----cEEEEEcCCCcHHHH
Q 000114 863 DIMQMLGRAGRPQYDSY-----GEGIIITGHSELRYY 894 (2158)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~-----G~~iil~~~~~~~~y 894 (2158)
+|+||+||++|++.++. ...|.+++.+..+.+
T Consensus 576 q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~ 612 (732)
T TIGR00603 576 QEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMY 612 (732)
T ss_pred HHHHHhcccccCCCCCccccccceEEEEecCCchHHH
Confidence 99999999999985433 233777777655443
No 166
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=6.4e-25 Score=287.84 Aligned_cols=424 Identities=16% Similarity=0.172 Sum_probs=297.7
Q ss_pred HHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCc
Q 000114 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGET 1429 (2158)
Q Consensus 1350 ~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~ 1429 (2158)
|-.++..+..++|+||||||||...-..++..... .++ ++++..|+|--|..+++++.+.++...|-.|+...-
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~--~~g--~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iR-- 131 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG--IAG--KIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIR-- 131 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc--cCC--eEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEE--
Confidence 33444557779999999999998877666655442 244 899999999999999999999888766666654321
Q ss_pred chhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEecc
Q 000114 1430 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALST 1509 (2158)
Q Consensus 1430 ~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSA 1509 (2158)
.+...-.+..|-++|.+.+...+. ....++.+++|||||+|. |.-....++.-++.+....+.+.++|.|||
T Consensus 132 -fe~~~s~~Trik~mTdGiLlrei~---~D~~Ls~ys~vIiDEaHE----RSl~tDilLgllk~~~~~rr~DLKiIimSA 203 (845)
T COG1643 132 -FESKVSPRTRIKVMTDGILLREIQ---NDPLLSGYSVVIIDEAHE----RSLNTDILLGLLKDLLARRRDDLKLIIMSA 203 (845)
T ss_pred -eeccCCCCceeEEeccHHHHHHHh---hCcccccCCEEEEcchhh----hhHHHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 112222466899999998655444 466799999999999993 333445577778887777777899999999
Q ss_pred CCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhH-hcCCCEEEEecChHHHH
Q 000114 1510 SLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVR 1588 (2158)
Q Consensus 1510 Tl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~-~~~~~~IVFv~sr~~~~ 1588 (2158)
|+ |.+.|+.+++..+ ++.. ..|..|+++++......++. + .......+..+. ...+.+|||.+..++.+
T Consensus 204 Tl-d~~rfs~~f~~ap--vi~i--~GR~fPVei~Y~~~~~~d~~--l---~~ai~~~v~~~~~~~~GdILvFLpG~~EI~ 273 (845)
T COG1643 204 TL-DAERFSAYFGNAP--VIEI--EGRTYPVEIRYLPEAEADYI--L---LDAIVAAVDIHLREGSGSILVFLPGQREIE 273 (845)
T ss_pred cc-CHHHHHHHcCCCC--EEEe--cCCccceEEEecCCCCcchh--H---HHHHHHHHHHhccCCCCCEEEECCcHHHHH
Confidence 98 8899999998533 3333 44667777776433322221 1 111112222221 34678999999999999
Q ss_pred HHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCc
Q 000114 1589 LTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668 (2158)
Q Consensus 1589 ~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~ 1668 (2158)
.++..|... .+. -..-|..+||.|+.+++.++++.-..|+.+|++||++
T Consensus 274 ~~~~~L~~~-----------------------------~l~--~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNI 322 (845)
T COG1643 274 RTAEWLEKA-----------------------------ELG--DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNI 322 (845)
T ss_pred HHHHHHHhc-----------------------------ccc--CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccc
Confidence 998777430 000 1234889999999999999999988898889999999
Q ss_pred cccccCCCccEEEEec----ceeecCCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhh--
Q 000114 1669 MCWGVPLTAHLVVVMG----TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLY-- 1738 (2158)
Q Consensus 1669 la~Gvdlp~~~vVI~g----t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~-- 1738 (2158)
++.++.+|++++||-+ ...|+++.+. ..+.|-.+.-||.|||||. ..|+|+-+++.. .|..+..
T Consensus 323 AETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~---~pGicyRLyse~---~~~~~~~~t 396 (845)
T COG1643 323 AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT---GPGICYRLYSEE---DFLAFPEFT 396 (845)
T ss_pred cccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC---CCceEEEecCHH---HHHhcccCC
Confidence 9999999999999943 3468877654 3578899999999999995 599999999873 3335554
Q ss_pred CCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhC
Q 000114 1739 DAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEAS 1818 (2158)
Q Consensus 1739 ~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~ 1818 (2158)
.|+...+.|...+.+ ..+-.+. .|...+.|+ ..|. ...+..++..|...
T Consensus 397 ~PEIlrtdLs~~vL~-----l~~~G~~-----~d~~~f~fl-----d~P~----------------~~~i~~A~~~L~~L 445 (845)
T COG1643 397 LPEILRTDLSGLVLQ-----LKSLGIG-----QDIAPFPFL-----DPPP----------------EAAIQAALTLLQEL 445 (845)
T ss_pred ChhhhhcchHHHHHH-----HHhcCCC-----CCcccCccC-----CCCC----------------hHHHHHHHHHHHHc
Confidence 466667777443332 1111111 011222222 2222 25678999999999
Q ss_pred CCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhc
Q 000114 1819 KCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLAS 1870 (2158)
Q Consensus 1819 ~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~ 1870 (2158)
|+|.. .-..|.+|.-||.++++++-++++..+-...+ ..+++.|.|.
T Consensus 446 GAld~----~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~-~~e~~~Ias~ 492 (845)
T COG1643 446 GALDD----SGKLTPLGKQMSLLPLDPRLARMLLTAPEGGC-LGEAATIASM 492 (845)
T ss_pred CCcCC----CCCCCHHHHHHHhCCCChHHHHHHHhccccCc-HHHHHHHHHh
Confidence 99942 23478889999999999999999998655333 4555555443
No 167
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1.9e-25 Score=278.59 Aligned_cols=366 Identities=23% Similarity=0.367 Sum_probs=241.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|..+|.+.+..+ ..++.++|+|||.+|||.+-..+|=.++.. ...+ .+||++|+++|+.|....+..+|....-.
T Consensus 511 ~Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~--VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSD--VVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhh-hcccceEEEeeccCCceeccHHHHHHHHhh-cCCC--EEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 5788999998877 446779999999999999987887777766 5556 89999999999999999999899544333
Q ss_pred EEEEEcCCcchhhhc-ccCCcEEEeCHHHHHHHHhh-hhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhh
Q 000114 1421 RVVELTGETAMDLKL-LEKGQIIISTPEKWDALSRR-WKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~-l~~~~IIV~TPe~l~~l~r~-~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~ 1497 (2158)
+...+.|+.+.+.+. .-+++|+|+-||.+.+++-. .....+..+++.+|+||+|++|.. .|..+|.++-.
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l------- 659 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL------- 659 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-------
Confidence 444555666555332 22679999999999987765 223457889999999999999984 56666655432
Q ss_pred cCCCceEEEeccCCCChHHHHHHhccCC------CceEecCCCC---------------------------cccccEE--
Q 000114 1498 VENKIRIVALSTSLANAKDLGEWIGATS------HGLFNFPPGV---------------------------RPVPLEI-- 1542 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dl~~wl~~~~------~~i~~f~~~~---------------------------rpv~l~~-- 1542 (2158)
.++.++++|||++|+..+..|+.... ....++...+ |.+....
T Consensus 660 --i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~ 737 (1330)
T KOG0949|consen 660 --IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRE 737 (1330)
T ss_pred --cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhc
Confidence 27889999999999999999997210 0011111100 0000000
Q ss_pred --------EEecccc------------------cchHH------------------HHHhcC-----------------h
Q 000114 1543 --------HIQGVDI------------------TNFEA------------------RMQAMT-----------------K 1561 (2158)
Q Consensus 1543 --------~i~~~~~------------------~~~~~------------------~~~~~~-----------------k 1561 (2158)
.+..+.. ..+.. ....+. +
T Consensus 738 ~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k 817 (1330)
T KOG0949|consen 738 LSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTK 817 (1330)
T ss_pred cccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhh
Confidence 0000000 00000 000000 0
Q ss_pred HH---------------HHHHHH-----hHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcc-----------------
Q 000114 1562 PT---------------FTAIVQ-----HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQ----------------- 1604 (2158)
Q Consensus 1562 ~~---------------~~~i~~-----~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~----------------- 1604 (2158)
++ .+.++. +-...-|+|+|-..|..|+.+|......+......
T Consensus 818 ~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a 897 (1330)
T KOG0949|consen 818 EVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRA 897 (1330)
T ss_pred hhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 00 000000 00234589999999998887776553221100000
Q ss_pred ---------------------------cc---cccCC----CcccchhhHhhh--hHHHHHHHhcccEEEecCCCCHHHH
Q 000114 1605 ---------------------------KS---AFLLW----PAEEVEPFIDNI--QEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2158)
Q Consensus 1605 ---------------------------~~---~~l~~----~~~~l~~~~~~i--~d~~L~~~l~~gv~~~H~~l~~~dR 1648 (2158)
.. .|+.. +...++.....+ .+..+...+-.|||+||+||....|
T Consensus 898 ~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR 977 (1330)
T KOG0949|consen 898 RDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYR 977 (1330)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHH
Confidence 00 00000 000011000011 2456777888999999999999999
Q ss_pred HHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1649 EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1649 ~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
..|+-+|+.|..+||+||.+++-|||.|+.+||..|.. .-.++..|.||+|||||.|||..|.++.|--+.
T Consensus 978 ~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs---------LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~ 1048 (1330)
T KOG0949|consen 978 SLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS---------LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPR 1048 (1330)
T ss_pred HHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccc---------cccCchhHHhhhccccccccccccceEEEeCcH
Confidence 99999999999999999999999999999999985532 345788999999999999999999999886554
No 168
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.4e-24 Score=278.59 Aligned_cols=319 Identities=16% Similarity=0.135 Sum_probs=214.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+++|..+++.++.|+ |+.+.||+|||++|.+|++..... +..+++++||+.||.|.++.+..++
T Consensus 103 ~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~-----------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALA-----------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred CCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhc-----------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 67899999999998875 999999999999999999987653 3479999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhccC----------------------CCccccccceEEe
Q 000114 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG----------------------DRTYTQLVKLLII 629 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~----------------------~~~~l~~v~lIIi 629 (2158)
..+|++|+.++|+.+...+ ....++|+|+|...+ |.|.-+.. .......+.+.||
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 9999999999999764332 346889999999886 55433321 1123455788999
Q ss_pred ecccccc-c-CC----------hh---hHHHHHHHHHHHHhh--------------------------------------
Q 000114 630 DEIHLLH-D-NR----------GP---VLESIVARTVRQIET-------------------------------------- 656 (2158)
Q Consensus 630 DEaH~l~-d-~r----------g~---~le~iv~r~~~~~~~-------------------------------------- 656 (2158)
||+|.++ | .+ .. .+-..+.++...+..
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999652 2 11 11 000000001000000
Q ss_pred ---------------c-------------------------------------------------------------ccc
Q 000114 657 ---------------T-------------------------------------------------------------KEH 660 (2158)
Q Consensus 657 ---------------~-------------------------------------------------------------~~~ 660 (2158)
. ..-
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 0 001
Q ss_pred ccEEEEccccCCh-HHHHHHHhccccCceEEecCCccccccee--EEEeeccCChhHHHHHhhHHHHHHHHHH-hCCCeE
Q 000114 661 IRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYRPVPLSQ--QYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQV 736 (2158)
Q Consensus 661 ~riv~lSATlpn~-~dv~~~l~~~~~~~~~~f~~~~rpv~l~~--~~~~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~v 736 (2158)
.++.|||||++.. +++..+.+.. +...+..+|..-.. .++..+ ...+...+... +... ..+.++
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~-----vv~IPt~kp~~r~~~~~~v~~t---~~~K~~aL~~~----i~~~~~~~~pv 476 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLP-----VVRIPTNRPSQRRHLPDEVFLT---AAAKWAAVAAR----VRELHAQGRPV 476 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCC-----eEEeCCCCCccceecCCEEEeC---HHHHHHHHHHH----HHHHHhcCCCE
Confidence 2677888887642 2333333322 12233444432111 111111 22233333322 2222 236789
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHH
Q 000114 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2158)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2158)
||||+|++.++.++..|...++. +..+||.+...++.. ..|
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~-------------------------------------~~~Lhg~~~~rE~~i--i~~ 517 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLP-------------------------------------HQVLNAKQDAEEAAI--VAR 517 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCC-------------------------------------EEEeeCCcHHHHHHH--HHH
Confidence 99999999999999999876543 345599876555544 455
Q ss_pred hCCCceEEEechhhhhccCCC---ceE-----EEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 817 GDGHVQVLVSTATLAWGVNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP---~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
+.+..+|+|||++++||+|+| ++. +||+ |+.+. |...|.||+|||||.| ..|.++.+.+.
T Consensus 518 ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~----~d~P~------s~r~y~hr~GRTGRqG--~~G~s~~~is~ 585 (656)
T PRK12898 518 AGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL----TERHD------SARIDRQLAGRCGRQG--DPGSYEAILSL 585 (656)
T ss_pred cCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE----cCCCC------CHHHHHHhcccccCCC--CCeEEEEEech
Confidence 555567999999999999999 665 8998 66655 6778999999999987 67999999887
Q ss_pred Cc
Q 000114 889 SE 890 (2158)
Q Consensus 889 ~~ 890 (2158)
.+
T Consensus 586 eD 587 (656)
T PRK12898 586 ED 587 (656)
T ss_pred hH
Confidence 54
No 169
>PRK14701 reverse gyrase; Provisional
Probab=99.93 E-value=2.8e-25 Score=311.90 Aligned_cols=336 Identities=18% Similarity=0.200 Sum_probs=210.9
Q ss_pred HHHHHhc---CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1331 LYEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1331 ~~~~l~~---gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
.+..+|. || .|+++|.++++.++.+.+ ++++||||||||++++++.+.... .+. +++||+||++|+.|++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d-~li~APTGsGKTl~~~~~al~~~~---~g~--~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKS-FSIVAPTGMGKSTFGAFIALFLAL---KGK--KCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHHHHHh---cCC--eEEEEECHHHHHHHHH
Confidence 3444443 58 699999999999999665 999999999999977666654422 233 8999999999999999
Q ss_pred HHHHHHhcCC--CCcEEEEEcCCcchhhh-----ccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1408 RDWEIKFGQG--LGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1408 ~~~~~~f~~~--~g~~v~~ltG~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
+.++. ++.. .++++..++|+.+...+ .+. ..+|+|+||+++....... ...+++++||||||++..
T Consensus 140 ~~l~~-l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 140 EKIES-FCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----KHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHH-HHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----hhCCCCEEEEECceeccc
Confidence 99994 4443 35678888898775532 222 3699999999876654431 126799999999999975
Q ss_pred CCCCh----------HHHHHH----------------------HHHHHHhhcCCCce-EEEeccCCCChHHHHHHhccCC
Q 000114 1479 QGGPV----------LEVIVS----------------------RMRYIASQVENKIR-IVALSTSLANAKDLGEWIGATS 1525 (2158)
Q Consensus 1479 ~~g~~----------~e~~is----------------------rl~~i~~~~~~~~r-iV~lSATl~n~~dl~~wl~~~~ 1525 (2158)
+ |.. .+.+.. ++......++...+ ++.+|||++...+...++....
T Consensus 215 ~-~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l 293 (1638)
T PRK14701 215 A-SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL 293 (1638)
T ss_pred c-ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe
Confidence 3 111 111111 11111112234445 5779999986555555553211
Q ss_pred CceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHH---HHHHHHHHhhcccCC
Q 000114 1526 HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYV---RLTAVDLMTYSSMDG 1602 (2158)
Q Consensus 1526 ~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~---~~~a~~L~~~~~~~~ 1602 (2158)
.|..... ++ .+....+.+....... +.....+... .+.++||||+|++.+ +.++..|..
T Consensus 294 --~f~v~~~-~~-~lr~i~~~yi~~~~~~------k~~L~~ll~~--~g~~gIVF~~t~~~~e~ae~la~~L~~------ 355 (1638)
T PRK14701 294 --GFEVGSG-RS-ALRNIVDVYLNPEKII------KEHVRELLKK--LGKGGLIFVPIDEGAEKAEEIEKYLLE------ 355 (1638)
T ss_pred --EEEecCC-CC-CCCCcEEEEEECCHHH------HHHHHHHHHh--CCCCeEEEEeccccchHHHHHHHHHHH------
Confidence 1222211 11 1111111111011111 0112222232 256899999998864 666655521
Q ss_pred cccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEec----CccccccCCCc-
Q 000114 1603 DQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS----SSMCWGVPLTA- 1677 (2158)
Q Consensus 1603 ~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT----~~la~Gvdlp~- 1677 (2158)
.+..+..+||+ |..+++.|++|+++||||| ++++||||+|.
T Consensus 356 -----------------------------~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~ 401 (1638)
T PRK14701 356 -----------------------------DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPER 401 (1638)
T ss_pred -----------------------------CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCc
Confidence 34568899995 8899999999999999999 48999999998
Q ss_pred cEEEEecceeecCCCCcCcCCCHH-------------HHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCC
Q 000114 1678 HLVVVMGTQYYDGQENAHTDYPVT-------------DLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDA 1740 (2158)
Q Consensus 1678 ~~vVI~gt~~yd~~~~~~~~~s~~-------------~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~ 1740 (2158)
+++|| +|+....+ +++. -.+++.|||||.| ..+.++...........++++.+.
T Consensus 402 Vryvi----~~~~Pk~~---~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~~ 468 (1638)
T PRK14701 402 IRFAV----FYGVPKFR---FRVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSILKDE 468 (1638)
T ss_pred cCEEE----EeCCCCCC---cchhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHhccH
Confidence 88888 33322111 1333 2456679999987 344454333344455666666553
No 170
>PRK13766 Hef nuclease; Provisional
Probab=99.93 E-value=2.7e-24 Score=296.91 Aligned_cols=328 Identities=22% Similarity=0.275 Sum_probs=218.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
.-+++++|.+++..++++ |+++++|||+|||++|.+++...+.. +++ ++|||+|+++|+.|+.+.+++.++ ..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~--~vLvl~Pt~~L~~Q~~~~~~~~~~-~~ 85 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK--KGG--KVLILAPTKPLVEQHAEFFRKFLN-IP 85 (773)
T ss_pred cCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh--CCC--eEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 457899999999988874 79999999999999999998887743 445 999999999999999999986554 23
Q ss_pred CcEEEEEcCCcchhh--hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHh
Q 000114 1419 GMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~ 1496 (2158)
+.++..++|+.+... +.+..++|+|+||+.+...+.. .+..+.+++++||||||++.+.. .+..+..+..
T Consensus 86 ~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~--~~~~i~~~~~---- 157 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNY--AYVYIAERYH---- 157 (773)
T ss_pred CceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCccccccc--cHHHHHHHHH----
Confidence 457888999877642 3456789999999988654432 34457889999999999886433 2222333222
Q ss_pred hcCCCceEEEeccCCCC-hHHH---HHHhccCCCceE-ecCCCCcc----cccEE-EEe---------------------
Q 000114 1497 QVENKIRIVALSTSLAN-AKDL---GEWIGATSHGLF-NFPPGVRP----VPLEI-HIQ--------------------- 1545 (2158)
Q Consensus 1497 ~~~~~~riV~lSATl~n-~~dl---~~wl~~~~~~i~-~f~~~~rp----v~l~~-~i~--------------------- 1545 (2158)
......++++||||+.. ...+ ...|+.....+. .+.+...+ ..+.. .+.
T Consensus 158 ~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~ 237 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLK 237 (773)
T ss_pred hcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence 12346789999999853 2233 333332211000 01111110 00000 000
Q ss_pred -----ccc--cc------ch-------------------------------------------------HHHHHh-----
Q 000114 1546 -----GVD--IT------NF-------------------------------------------------EARMQA----- 1558 (2158)
Q Consensus 1546 -----~~~--~~------~~-------------------------------------------------~~~~~~----- 1558 (2158)
+.. .. .. ...+..
T Consensus 238 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~ 317 (773)
T PRK13766 238 KLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSS 317 (773)
T ss_pred HHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcccc
Confidence 000 00 00 000000
Q ss_pred --------------------------cChHHHHHHHHhH------hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccc
Q 000114 1559 --------------------------MTKPTFTAIVQHA------KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2158)
Q Consensus 1559 --------------------------~~k~~~~~i~~~~------~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~ 1606 (2158)
...+.+..+...+ .+++++||||++++.|..++..|..
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~---------- 387 (773)
T PRK13766 318 GGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK---------- 387 (773)
T ss_pred CCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh----------
Confidence 0001111111111 3567899999999999988876632
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhcccEEEe--------cCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCcc
Q 000114 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL--------HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678 (2158)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~--------H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~ 1678 (2158)
.+..+..+ |++|++.+|..+++.|++|.++|||||+++++|+|+|.+
T Consensus 388 -------------------------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 388 -------------------------EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred -------------------------CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccC
Confidence 11122333 446999999999999999999999999999999999999
Q ss_pred EEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
.+|| +++.+.+...|+||+||+||.| .|.+++++....
T Consensus 443 ~~VI----------~yd~~~s~~r~iQR~GR~gR~~---~~~v~~l~~~~t 480 (773)
T PRK13766 443 DLVI----------FYEPVPSEIRSIQRKGRTGRQE---EGRVVVLIAKGT 480 (773)
T ss_pred CEEE----------EeCCCCCHHHHHHHhcccCcCC---CCEEEEEEeCCC
Confidence 9999 3445668999999999999965 578888877653
No 171
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.7e-24 Score=283.54 Aligned_cols=324 Identities=19% Similarity=0.205 Sum_probs=214.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
|+ .|+++|..+...+..| -|+.+.||+|||++|.+|++.....+ ..+.+++|++.||.|.+..+.
T Consensus 76 g~-~p~~vQl~~~~~l~~G---~Iaem~TGeGKTL~a~lp~~l~al~G-----------~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEG---NIAEMQTGEGKTLTATMPLYLNALEG-----------KGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred CC-CCchHHHHhHHHHcCC---ceeeecCCCcchHHHHHHHHHHHHcC-----------CCeEEEeCCHHHHHHHHHHHH
Confidence 44 7899999998876554 39999999999999999998665543 369999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCc-cC-HhhhccccEEEcchhHH--HHHHhcc---CCCccccccceEEeecccccc-c-CChh-
Q 000114 572 NRLQMYDVKVRELSGDQT-LT-RQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGP- 641 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~-~~-~~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l~-d-~rg~- 641 (2158)
.++..+|++|+.++|+.+ .. ++....++|+++||..+ |.+..+. .....+..+.++||||||.++ | .+.|
T Consensus 141 ~l~~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 141 QVYEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred HHHhhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 999999999999999987 32 23456799999999997 6555442 122456788999999999662 3 2322
Q ss_pred ----------hHHHHHHHHHHHHhhc-----ccccc--------------------------------------------
Q 000114 642 ----------VLESIVARTVRQIETT-----KEHIR-------------------------------------------- 662 (2158)
Q Consensus 642 ----------~le~iv~r~~~~~~~~-----~~~~r-------------------------------------------- 662 (2158)
.+-.+..++....... ....+
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 1111222222111100 01112
Q ss_pred -----------------------------------------------------------------EEEEccccCChHHHH
Q 000114 663 -----------------------------------------------------------------LVGLSATLPNYEDVA 677 (2158)
Q Consensus 663 -----------------------------------------------------------------iv~lSATlpn~~dv~ 677 (2158)
+.|||.|... .-.
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t--~~~ 378 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKT--EEK 378 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChH--HHH
Confidence 2233333211 001
Q ss_pred HHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHHHH
Q 000114 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDT 756 (2158)
Q Consensus 678 ~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (2158)
.|.... .- .+..-+..+|+.-...--.+.. ....+...+. ..+.. +..+.|+||||+|++.++.++..|...
T Consensus 379 e~~~~Y-~l-~v~~IPt~kp~~r~d~~~~i~~-~~~~K~~al~----~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 379 EFFEVY-NM-EVVQIPTNRPIIRIDYPDKVFV-TLDEKYKAVI----EEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred HHHHHh-CC-cEEECCCCCCcccccCCCeEEc-CHHHHHHHHH----HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 111111 00 1111222333211100000000 1112222222 22222 234789999999999999999999876
Q ss_pred hhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCC
Q 000114 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (2158)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (2158)
++. +...||.+...++..+...+..| +|+|||++++||+|+
T Consensus 452 gi~-------------------------------------~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI 492 (790)
T PRK09200 452 GIP-------------------------------------HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDI 492 (790)
T ss_pred CCC-------------------------------------EEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCC
Confidence 543 34569999999988888888777 799999999999999
Q ss_pred ---CceE-----EEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 837 ---PAHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 837 ---P~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
|++. +||+ |+.+. |...|.||+|||||.| ..|.++.+++..+
T Consensus 493 ~l~~~V~~~GGL~VI~----~d~p~------s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 493 KLGEGVHELGGLAVIG----TERME------SRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred CcccccccccCcEEEe----ccCCC------CHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 7998 9999 66554 6778999999999987 6799999887654
No 172
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.8e-25 Score=287.91 Aligned_cols=345 Identities=20% Similarity=0.222 Sum_probs=218.4
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh
Q 000114 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (2158)
Q Consensus 515 lv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~ 594 (2158)
|+.||||||||.+|+.++...+..+ .+++|++|+++|+.|++++|++.+ |..+..++|+.+...+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g-----------~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~ 66 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-----------KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL 66 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH
Confidence 5789999999999987776665432 379999999999999999999876 46788899987654321
Q ss_pred -------hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc--CChhhHHHHHHHHHHHHhhccccccEEE
Q 000114 595 -------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLESIVARTVRQIETTKEHIRLVG 665 (2158)
Q Consensus 595 -------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d--~rg~~le~iv~r~~~~~~~~~~~~riv~ 665 (2158)
....+|+|+|+..+ . ..+.++++|||||+|.... ..++.+.. |-.........+.++|+
T Consensus 67 ~~~~~~~~g~~~IVVGTrsal---f------~p~~~l~lIIVDEeh~~sykq~~~p~y~a---r~~a~~ra~~~~~~vil 134 (505)
T TIGR00595 67 QAWRKVKNGEILVVIGTRSAL---F------LPFKNLGLIIVDEEHDSSYKQEEGPRYHA---RDVAVYRAKKFNCPVVL 134 (505)
T ss_pred HHHHHHHcCCCCEEECChHHH---c------CcccCCCEEEEECCCccccccccCCCCcH---HHHHHHHHHhcCCCEEE
Confidence 23678999998853 1 3467899999999997653 33444321 11111122346889999
Q ss_pred EccccCChHHHHHHHhccccCceEEecCCc--ccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhC-CCeEEEEecC
Q 000114 666 LSATLPNYEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHS 742 (2158)
Q Consensus 666 lSATlpn~~dv~~~l~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~vLVFv~s 742 (2158)
+||| |..+.......... ........+ ++.| ...++...... ....+...+++.+.+... ++|+|||+|+
T Consensus 135 ~SAT-Psles~~~~~~g~~--~~~~l~~r~~~~~~p-~v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~qvLvflnr 207 (505)
T TIGR00595 135 GSAT-PSLESYHNAKQKAY--RLLVLTRRVSGRKPP-EVKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQSILFLNR 207 (505)
T ss_pred EeCC-CCHHHHHHHhcCCe--EEeechhhhcCCCCC-eEEEEeccccc---ccCCccHHHHHHHHHHHHcCCcEEEEEeC
Confidence 9999 66555554432211 111111111 1111 22333322211 111234455566655554 6799999999
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccCchhHHHH----------HhhhhccC--------------cchhhhhcc-CCe
Q 000114 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREIL----------QSHTDMVK--------------SNDLKDLLP-YGF 797 (2158)
Q Consensus 743 r~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~--------------~~~l~~ll~-~gv 797 (2158)
|..+..+...=+..-..+......+..+....... ...+..+. .+.|+..++ ..|
T Consensus 208 rGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v 287 (505)
T TIGR00595 208 RGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARI 287 (505)
T ss_pred CcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcE
Confidence 98765544433333222221111111000000000 00011111 123444443 578
Q ss_pred EEecCCCCHHHH--HHHHHHHhCCCceEEEechhhhhccCCCceEEE--EecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 798 AIHHAGMTRGDR--QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI--IKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 798 ~~hHagl~~~~R--~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV--I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
...|+.++...+ +.+++.|++|+++|||+|+++++|+|+|++++| ++.+...+.+..+..+-..+.|+|++|||||
T Consensus 288 ~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR 367 (505)
T TIGR00595 288 ARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGR 367 (505)
T ss_pred EEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCC
Confidence 889999987766 889999999999999999999999999999976 5666655556555566678899999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHH
Q 000114 874 PQYDSYGEGIIITGHSELRYY 894 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y 894 (2158)
.+ ..|.+++.+...+...+
T Consensus 368 ~~--~~g~viiqt~~p~~~~~ 386 (505)
T TIGR00595 368 AE--DPGQVIIQTYNPNHPAI 386 (505)
T ss_pred CC--CCCEEEEEeCCCCCHHH
Confidence 65 67999999877664433
No 173
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=2.8e-24 Score=278.53 Aligned_cols=345 Identities=17% Similarity=0.184 Sum_probs=217.6
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc
Q 000114 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~ 575 (2158)
++|+|.|++..+..... .++.++||+|||++|.+|++.....+ ..++|++|+++||.|.++.+..++.
T Consensus 69 lrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~g-----------~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALTG-----------KGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhcC-----------CceEEeCCCHHHHHHHHHHHHHHHh
Confidence 45555556655444444 69999999999999999987665432 2599999999999999999999999
Q ss_pred cCCcEEEEEeCCCc---cC---HhhhccccEEEcchhHH--HHHHhcc---CCCccccccceEEeecccccc-c-CChhh
Q 000114 576 MYDVKVRELSGDQT---LT---RQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGPV 642 (2158)
Q Consensus 576 ~~gi~v~~l~Gd~~---~~---~~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l~-d-~rg~~ 642 (2158)
.+|++|+..+++.. .. .+....++|+++||+.+ |.+..+. .....+..+.++||||||.++ | .|.|.
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 99999998877521 22 22345899999999997 5443321 122346789999999999773 2 12211
Q ss_pred -----------HHHHHHHHHHHHhhc-----cccc---------------------------------------------
Q 000114 643 -----------LESIVARTVRQIETT-----KEHI--------------------------------------------- 661 (2158)
Q Consensus 643 -----------le~iv~r~~~~~~~~-----~~~~--------------------------------------------- 661 (2158)
+-..+.++.+.+... ...-
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 111121221111100 0011
Q ss_pred ----------------------------------------------------------------cEEEEccccCChHHHH
Q 000114 662 ----------------------------------------------------------------RLVGLSATLPNYEDVA 677 (2158)
Q Consensus 662 ----------------------------------------------------------------riv~lSATlpn~~dv~ 677 (2158)
++.|||.|.. ..-.
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~--~~~~ 374 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK--VAEK 374 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh--hHHH
Confidence 2333333321 1111
Q ss_pred HHHhccccCceEEecCCcccccceeE--EEeeccCChhHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHH
Q 000114 678 LFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIR 754 (2158)
Q Consensus 678 ~~l~~~~~~~~~~f~~~~rpv~l~~~--~~~~~~~~~~~~~~~l~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~ 754 (2158)
+|.... .--+..-+..+|+.-... .+.. ....+...+. +.+.+ +..+.|+||||+|+..++.++..|.
T Consensus 375 Ef~~iY--~l~v~~IPt~kp~~r~d~~d~i~~---~~~~K~~ai~----~~i~~~~~~~~pvLIft~s~~~se~ls~~L~ 445 (762)
T TIGR03714 375 EFIETY--SLSVVKIPTNKPIIRIDYPDKIYA---TLPEKLMATL----EDVKEYHETGQPVLLITGSVEMSEIYSELLL 445 (762)
T ss_pred HHHHHh--CCCEEEcCCCCCeeeeeCCCeEEE---CHHHHHHHHH----HHHHHHhhCCCCEEEEECcHHHHHHHHHHHH
Confidence 222111 111122233333321110 0111 1112222222 22222 2447899999999999999999998
Q ss_pred HHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhcc
Q 000114 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834 (2158)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GV 834 (2158)
..++. +...||.+...+|..+...++.| +|+|||++++||+
T Consensus 446 ~~gi~-------------------------------------~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGt 486 (762)
T TIGR03714 446 REGIP-------------------------------------HNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGT 486 (762)
T ss_pred HCCCC-------------------------------------EEEecCCChHHHHHHHHHcCCCC--eEEEEcccccccc
Confidence 76543 34459999999998888877777 7999999999999
Q ss_pred CCC---------ceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH----------HHH
Q 000114 835 NLP---------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR----------YYL 895 (2158)
Q Consensus 835 dlP---------~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~----------~y~ 895 (2158)
|+| ++.||++ |++++ ...+ .||+|||||.| ..|.++.+++..+.- .+.
T Consensus 487 DI~l~~~v~~~GGL~vIit----~~~ps------~rid-~qr~GRtGRqG--~~G~s~~~is~eD~l~~~~~~~~~~~~~ 553 (762)
T TIGR03714 487 DIKLGKGVAELGGLAVIGT----ERMEN------SRVD-LQLRGRSGRQG--DPGSSQFFVSLEDDLIKRWSPSWLKKYY 553 (762)
T ss_pred CCCCCccccccCCeEEEEe----cCCCC------cHHH-HHhhhcccCCC--CceeEEEEEccchhhhhhcchHHHHHHH
Confidence 999 9999998 77775 3344 99999999987 779999998875421 122
Q ss_pred Hhhc--C----CCcccchhhHhhHHH
Q 000114 896 SLMN--Q----QLPIESQFVSKLADQ 915 (2158)
Q Consensus 896 ~ll~--~----~~pieS~l~~~l~d~ 915 (2158)
+.+. + ..||++.+.....++
T Consensus 554 ~~~~~~~~~~~~~~i~~~~~~~~i~~ 579 (762)
T TIGR03714 554 KKYSVKDSKLKPSALFKRRFRKIVEK 579 (762)
T ss_pred HHcCCCcccccCcccccHHHHHHHHH
Confidence 2221 1 267888876655443
No 174
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=5.4e-26 Score=245.86 Aligned_cols=300 Identities=21% Similarity=0.276 Sum_probs=215.9
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
|+.++.+- .||++|..+|.+|||.++.|-+ ++..|..|.|||.+|.++-|+.+..-. +...+++++.||+
T Consensus 51 pellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiepv~--------g~vsvlvmchtre 121 (387)
T KOG0329|consen 51 PELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEPVD--------GQVSVLVMCHTRE 121 (387)
T ss_pred HHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCCCC--------CeEEEEEEeccHH
Confidence 55555555 7999999999999999999977 999999999999999999999986531 3568999999999
Q ss_pred HHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc
Q 000114 562 LVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 562 La~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
||-|+.+++.++.+.+ +++|..+.|+....+.. .+-++|+|+||+++..+.|... ..+++++.+|+|||+.+++
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~--l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRS--LNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhcc--CchhhcceeehhhHHHHHH
Confidence 9999988877655543 78999999998876532 3467999999999988887764 5788999999999997754
Q ss_pred ---CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcc---cccceeEEEeeccCC
Q 000114 638 ---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR---PVPLSQQYIGIQVKK 711 (2158)
Q Consensus 638 ---~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~r---pv~l~~~~~~~~~~~ 711 (2158)
.|..+-| +.+.++..-|++.+|||+++ ++....+.....++-.|-.... --.++++|+..++..
T Consensus 200 ~lDMrRDvQE--------ifr~tp~~KQvmmfsatlsk--eiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e 269 (387)
T KOG0329|consen 200 QLDMRRDVQE--------IFRMTPHEKQVMMFSATLSK--EIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE 269 (387)
T ss_pred HHHHHHHHHH--------HhhcCcccceeeeeeeecch--hhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh
Confidence 2332222 22446888999999999984 4433332222222222222111 123444555444433
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh
Q 000114 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2158)
Q Consensus 712 ~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (2158)
..+++.. +++...-+|++||+.|....
T Consensus 270 KNrkl~d--------LLd~LeFNQVvIFvKsv~Rl--------------------------------------------- 296 (387)
T KOG0329|consen 270 KNRKLND--------LLDVLEFNQVVIFVKSVQRL--------------------------------------------- 296 (387)
T ss_pred hhhhhhh--------hhhhhhhcceeEeeehhhhh---------------------------------------------
Confidence 3222221 23334467999999875530
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhccc
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2158)
+ | .-+ +|||+.+.||+|+-.++.|||++.|-+ ...|+||+|||
T Consensus 297 -------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~----------~DtYlHrv~rA 339 (387)
T KOG0329|consen 297 -------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPED----------SDTYLHRVARA 339 (387)
T ss_pred -------------h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCC----------chHHHHHhhhh
Confidence 0 2 113 899999999999999999999555544 44699999999
Q ss_pred CCCCCCCccEEEEEcCCCcHHHHH
Q 000114 872 GRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
||-| +.|.+|.+.+..+....+
T Consensus 340 grfG--tkglaitfvs~e~da~iL 361 (387)
T KOG0329|consen 340 GRFG--TKGLAITFVSDENDAKIL 361 (387)
T ss_pred hccc--cccceeehhcchhhHHHh
Confidence 9955 889999999887655443
No 175
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.93 E-value=6e-25 Score=248.14 Aligned_cols=326 Identities=21% Similarity=0.295 Sum_probs=237.3
Q ss_pred hhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 485 ~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
.+++.| ..++|+|.|..+|...+.+.+ +++..|||.||++||.||.|-. + .-+++|+|..+|+.
T Consensus 85 ilk~~f-~lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal~a-------d-------g~alvi~plislme 148 (695)
T KOG0353|consen 85 ILKEQF-HLEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPALCA-------D-------GFALVICPLISLME 148 (695)
T ss_pred HHHHHh-hHHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHHhc-------C-------CceEeechhHHHHH
Confidence 345555 367899999999999998876 8889999999999999998853 1 25899999999999
Q ss_pred HHHHHHHhhcccCCcEEEEEeCCCccCHhh---------hccccEEEcchhHH---HHHHhccCCCccccccceEEeecc
Q 000114 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEI 632 (2158)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---------~~~~~IiV~TPekl---d~l~r~~~~~~~l~~v~lIIiDEa 632 (2158)
++.-.++++ |+....+....+..... .....+|..|||++ ..+..+.........+.+|-|||+
T Consensus 149 dqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidev 224 (695)
T KOG0353|consen 149 DQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEV 224 (695)
T ss_pred HHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecce
Confidence 988877764 67666666554433221 13567999999997 222222211123456789999999
Q ss_pred ccccc---CChhhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEEecCCcccccceeEEEee
Q 000114 633 HLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707 (2158)
Q Consensus 633 H~l~d---~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~ 707 (2158)
|+... ++.|.+..+ .-+.| ..++..++||+||..| ..|+...|... ..|.|...|....+...+..-
T Consensus 225 hccsqwghdfr~dy~~l-~ilkr----qf~~~~iigltatatn~vl~d~k~il~ie---~~~tf~a~fnr~nl~yev~qk 296 (695)
T KOG0353|consen 225 HCCSQWGHDFRPDYKAL-GILKR----QFKGAPIIGLTATATNHVLDDAKDILCIE---AAFTFRAGFNRPNLKYEVRQK 296 (695)
T ss_pred eehhhhCcccCcchHHH-HHHHH----hCCCCceeeeehhhhcchhhHHHHHHhHH---hhheeecccCCCCceeEeeeC
Confidence 98753 456666543 22222 3568899999999876 46777777653 457777777666666544422
Q ss_pred ccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcc
Q 000114 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2158)
Q Consensus 708 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 787 (2158)
+.. ...-... +...+.....+...||||-|+++|++++..|...|+...
T Consensus 297 p~n-~dd~~ed----i~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~-------------------------- 345 (695)
T KOG0353|consen 297 PGN-EDDCIED----IAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAG-------------------------- 345 (695)
T ss_pred CCC-hHHHHHH----HHHHhccccCCCcceEEEeccccHHHHHHHHHhcCcccc--------------------------
Confidence 221 1111111 112222233366789999999999999999998876543
Q ss_pred hhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHH-
Q 000114 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ- 866 (2158)
Q Consensus 788 ~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Q- 866 (2158)
.+|+.|.++||.-+-+.+..|+++|+|+|-.+.+|||-|+|++||+ .+.++ |+..|.|
T Consensus 346 -----------~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih----hsl~k------sienyyqa 404 (695)
T KOG0353|consen 346 -----------AYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH----HSLPK------SIENYYQA 404 (695)
T ss_pred -----------ccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe----cccch------hHHHHHHH
Confidence 4599999999999999999999999999999999999999999999 44444 7788998
Q ss_pred ------------------------------------------hhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 867 ------------------------------------------MLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 867 ------------------------------------------r~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
-.|||||.+ ....||+++.-.+.-
T Consensus 405 sarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 405 SARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGFADIF 470 (695)
T ss_pred HHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEEechHHHH
Confidence 789999976 668899988765543
No 176
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=1.8e-24 Score=298.76 Aligned_cols=303 Identities=18% Similarity=0.191 Sum_probs=194.2
Q ss_pred hHHHHHhc---CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1330 PLYEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1330 ~~~~~l~~---gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
..++++|. |+ .|+|+|.++++.++.+ +|++++||||||||.++ +++...+.. .+. +++||+||++|+.|+
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g-~dv~i~ApTGsGKT~f~-l~~~~~l~~--~g~--~alIL~PTreLa~Qi 139 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLG-ESFAIIAPTGVGKTTFG-LVMSLYLAK--KGK--KSYIIFPTRLLVEQV 139 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCC-CcEEEEcCCCCCHHHHH-HHHHHHHHh--cCC--eEEEEeccHHHHHHH
Confidence 34566664 45 8999999999999985 45999999999999754 444444433 233 999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcch---h----hhcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1407 YRDWEIKFGQGLGMRVVELTGETAM---D----LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~ltG~~~~---~----~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
++.++ .++...++.+..+.|+... . ...+ ..++|+|+||+++...... ....+++++||||||++.
T Consensus 140 ~~~l~-~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 140 VEKLE-KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHH-HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhh
Confidence 99999 5665567777777765431 1 1122 2469999999998766542 234569999999999987
Q ss_pred CCC----------CC---hHHHHHHHHH-------------HHHhhc----CCCceEEEeccCCCCh-HH---HHHHhcc
Q 000114 1478 GQG----------GP---VLEVIVSRMR-------------YIASQV----ENKIRIVALSTSLANA-KD---LGEWIGA 1523 (2158)
Q Consensus 1478 ~~~----------g~---~~e~~isrl~-------------~i~~~~----~~~~riV~lSATl~n~-~d---l~~wl~~ 1523 (2158)
++. |. .++.++..++ .+...+ +...|++++|||.+.. .. +.+.++
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~- 293 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG- 293 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce-
Confidence 521 22 1222222221 111111 1267899999999642 11 122222
Q ss_pred CCCceEecCCCC-cccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHH---HHHHHHHHHhhcc
Q 000114 1524 TSHGLFNFPPGV-RPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKY---VRLTAVDLMTYSS 1599 (2158)
Q Consensus 1524 ~~~~i~~f~~~~-rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~---~~~~a~~L~~~~~ 1599 (2158)
+...... ..-.+...+...+ . . ......+... -+.++||||++++. |+.++..|..
T Consensus 294 -----~~v~~~~~~~rnI~~~yi~~~--~---k-----~~~L~~ll~~--l~~~~LIFv~t~~~~~~ae~l~~~L~~--- 353 (1176)
T PRK09401 294 -----FEVGSPVFYLRNIVDSYIVDE--D---S-----VEKLVELVKR--LGDGGLIFVPSDKGKEYAEELAEYLED--- 353 (1176)
T ss_pred -----EEecCcccccCCceEEEEEcc--c---H-----HHHHHHHHHh--cCCCEEEEEecccChHHHHHHHHHHHH---
Confidence 1111100 0001111111100 1 0 1111222222 24689999999877 8888765522
Q ss_pred cCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEe----cCccccccCC
Q 000114 1600 MDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPL 1675 (2158)
Q Consensus 1600 ~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdl 1675 (2158)
.+..+..+||+| ++ .++.|++|+++|||| |++++||||+
T Consensus 354 --------------------------------~gi~v~~~hg~l----~~-~l~~F~~G~~~VLVatas~tdv~aRGIDi 396 (1176)
T PRK09401 354 --------------------------------LGINAELAISGF----ER-KFEKFEEGEVDVLVGVASYYGVLVRGIDL 396 (1176)
T ss_pred --------------------------------CCCcEEEEeCcH----HH-HHHHHHCCCCCEEEEecCCCCceeecCCC
Confidence 345689999999 22 349999999999999 6899999999
Q ss_pred Cc-cEEEEecceeecCCCCcCcCC------CHHHHHHhhccCCC
Q 000114 1676 TA-HLVVVMGTQYYDGQENAHTDY------PVTDLLQMMGHASR 1712 (2158)
Q Consensus 1676 p~-~~vVI~gt~~yd~~~~~~~~~------s~~~~lQr~GRaGR 1712 (2158)
|. +++|| |+++|. ....+.|++||+-+
T Consensus 397 P~~IryVI----------~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 397 PERIRYAI----------FYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CcceeEEE----------EeCCCCEEEeccccccCHHHHHHHHh
Confidence 98 78888 333332 34668999999864
No 177
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=3.8e-24 Score=277.66 Aligned_cols=315 Identities=13% Similarity=0.196 Sum_probs=202.7
Q ss_pred CCCCHHHHHHHHHHhcCC--CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1340 KHFNPIQTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~--~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
..++|+|.+++..++..+ .+.+|++|||+|||++++.++. .+ .+ ++|||||+..|+.|+.+.+.+ +...
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-----~k--~tLILvps~~Lv~QW~~ef~~-~~~l 324 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-----KK--SCLVLCTSAVSVEQWKQQFKM-WSTI 324 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----CC--CEEEEeCcHHHHHHHHHHHHH-hcCC
Confidence 368999999999998644 4789999999999999976554 23 23 799999999999999999984 4333
Q ss_pred CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhh------ccccccceeEEEecccccccCCCCChHHHHHHHH
Q 000114 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK------QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~------~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl 1491 (2158)
....+..++|+.... ......|+|+|++.+....++.. ....-..++++|+||||++.. +.+..++.
T Consensus 325 ~~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~il~-- 397 (732)
T TIGR00603 325 DDSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRRVLT-- 397 (732)
T ss_pred CCceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHHHHH--
Confidence 345678888864332 12346899999987643222110 011124688999999999852 22322222
Q ss_pred HHHHhhcCCCceEEEeccCCCChH----HHHHHhccCCCceEecCC-------CCcccccEEEEecccccch--------
Q 000114 1492 RYIASQVENKIRIVALSTSLANAK----DLGEWIGATSHGLFNFPP-------GVRPVPLEIHIQGVDITNF-------- 1552 (2158)
Q Consensus 1492 ~~i~~~~~~~~riV~lSATl~n~~----dl~~wl~~~~~~i~~f~~-------~~rpv~l~~~i~~~~~~~~-------- 1552 (2158)
.+. ....+|||||+...+ ++...+|.. +|.... ..-++.........+...+
T Consensus 398 -----~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~---vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~ 468 (732)
T TIGR00603 398 -----IVQ-AHCKLGLTATLVREDDKITDLNFLIGPK---LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENS 468 (732)
T ss_pred -----hcC-cCcEEEEeecCcccCCchhhhhhhcCCe---eeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcc
Confidence 222 345699999996432 232223322 222110 0111111111111111101
Q ss_pred --HHHHHhcChHHHHH---HHH-hHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHH
Q 000114 1553 --EARMQAMTKPTFTA---IVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE 1626 (2158)
Q Consensus 1553 --~~~~~~~~k~~~~~---i~~-~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~ 1626 (2158)
...+..++...+.. +.. +-..+.++||||.+...+..++..|
T Consensus 469 ~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-------------------------------- 516 (732)
T TIGR00603 469 RKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-------------------------------- 516 (732)
T ss_pred hhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc--------------------------------
Confidence 11122344444333 222 2136789999999998877666332
Q ss_pred HHHHHhcccEEEecCCCCHHHHHHHHHHHHcC-CceEEEecCccccccCCCccEEEEecceeecCCCCcCcC-CCHHHHH
Q 000114 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAG-KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLL 1704 (2158)
Q Consensus 1627 ~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g-~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~-~s~~~~l 1704 (2158)
++.++||+++..+|..+++.|++| .+++||+|+++.+|+|+|.+.+||. + ..+ -|..+|+
T Consensus 517 --------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~------s~~~gS~~q~i 578 (732)
T TIGR00603 517 --------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----I------SSHYGSRRQEA 578 (732)
T ss_pred --------CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----e------CCCCCCHHHHH
Confidence 356789999999999999999875 8899999999999999999999982 2 222 2789999
Q ss_pred HhhccCCCCCCCCc-----eEEEEEecCCh
Q 000114 1705 QMMGHASRPLLDNS-----GKCVILCHAPR 1729 (2158)
Q Consensus 1705 Qr~GRaGR~g~d~~-----G~~iil~~~~~ 1729 (2158)
||+||++|++.++. +..+.++....
T Consensus 579 QRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 579 QRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred HHhcccccCCCCCccccccceEEEEecCCc
Confidence 99999999974433 23355665553
No 178
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=3e-24 Score=276.67 Aligned_cols=375 Identities=18% Similarity=0.186 Sum_probs=230.9
Q ss_pred EEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-----c
Q 000114 1361 LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-----L 1435 (2158)
Q Consensus 1361 li~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~-----~ 1435 (2158)
|+.||||||||.+|+.++...+.. ++ +++|++|+++|+.|+++++++.|+ .++..++|+.+...+ .
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~--~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GK--SVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHHHHHH
Confidence 478999999999997766555543 44 899999999999999999998774 468888987765421 1
Q ss_pred c--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC--CCCChHHHH-HHHHHHHHhhcCCCceEEEeccC
Q 000114 1436 L--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEVI-VSRMRYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1436 l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~--~~g~~~e~~-isrl~~i~~~~~~~~riV~lSAT 1510 (2158)
+ ..++|||+|+..+. ..++++++|||||+|...- ..++.|..- +..++. . ..+.++|++|||
T Consensus 72 ~~~g~~~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra---~-~~~~~vil~SAT 138 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA---K-KFNCPVVLGSAT 138 (505)
T ss_pred HHcCCCCEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH---H-hcCCCEEEEeCC
Confidence 1 24589999987542 2478899999999998764 234444220 111221 1 247899999999
Q ss_pred CCChHHHHHHhccCCCceEecC--CCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHH
Q 000114 1511 LANAKDLGEWIGATSHGLFNFP--PGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVR 1588 (2158)
Q Consensus 1511 l~n~~dl~~wl~~~~~~i~~f~--~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~ 1588 (2158)
+ ..+.+....... ....... +..++.| .+.+....... ....+...++..+.+.+..++++|||+|+|..+-
T Consensus 139 P-sles~~~~~~g~-~~~~~l~~r~~~~~~p-~v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~ 212 (505)
T TIGR00595 139 P-SLESYHNAKQKA-YRLLVLTRRVSGRKPP-EVKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQSILFLNRRGYSK 212 (505)
T ss_pred C-CHHHHHHHhcCC-eEEeechhhhcCCCCC-eEEEEeccccc---ccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCC
Confidence 4 555444332211 1111111 1112222 22222211111 0023455677888888888999999999987532
Q ss_pred HHHHH------------------------HHhhcccCCcccccccCCCcccchhh---HhhhhHHHHHHHhcccEEEecC
Q 000114 1589 LTAVD------------------------LMTYSSMDGDQKSAFLLWPAEEVEPF---IDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1589 ~~a~~------------------------L~~~~~~~~~~~~~~l~~~~~~l~~~---~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
.+.-. .|.+|.........+..|....+... .+++.+..-+.+.+..|..+|+
T Consensus 213 ~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~ 292 (505)
T TIGR00595 213 NLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDS 292 (505)
T ss_pred eeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEec
Confidence 21111 01222211111111223333333322 3444444444444568999999
Q ss_pred CCCHHHH--HHHHHHHHcCCceEEEecCccccccCCCccEEEE-eccee--ecCCCCcCcCCCHHHHHHhhccCCCCCCC
Q 000114 1642 GLNKTDQ--EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQY--YDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2158)
Q Consensus 1642 ~l~~~dR--~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI-~gt~~--yd~~~~~~~~~s~~~~lQr~GRaGR~g~d 1716 (2158)
+++...+ +.+++.|++|+++|||+|+.+++|+|+|++.+|+ .+... +.+. -+........|+|++|||||.+
T Consensus 293 d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd-~ra~E~~~~ll~q~~GRagR~~-- 369 (505)
T TIGR00595 293 DTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD-FRAAERGFQLLTQVAGRAGRAE-- 369 (505)
T ss_pred ccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcc-cchHHHHHHHHHHHHhccCCCC--
Confidence 9987766 8999999999999999999999999999988653 33221 0000 0001113678999999999975
Q ss_pred CceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCC
Q 000114 1717 NSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGV 1795 (2158)
Q Consensus 1717 ~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~ 1795 (2158)
..|.+++.+..++...++.+... |--.|.....-.|+....|.|..+..+
T Consensus 370 ~~g~viiqt~~p~~~~~~~~~~~-----------------------------d~~~f~~~el~~R~~~~~PPf~~l~~i 419 (505)
T TIGR00595 370 DPGQVIIQTYNPNHPAIQAALTG-----------------------------DYEAFYEQELAQRRALNYPPFTRLIRL 419 (505)
T ss_pred CCCEEEEEeCCCCCHHHHHHHhC-----------------------------CHHHHHHHHHHHHHHcCCCchhcEEEE
Confidence 78999999988764443332211 112344445556777888999887644
No 179
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=6e-23 Score=247.58 Aligned_cols=451 Identities=17% Similarity=0.179 Sum_probs=301.0
Q ss_pred HHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE
Q 000114 1345 IQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE 1424 (2158)
Q Consensus 1345 iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ 1424 (2158)
.+.+.+..+ ..++.|+|.+.||||||......++ ......+| .+-+..|.|.-|..+++++...++..+|..|+.
T Consensus 360 ~R~~ll~~i-r~n~vvvivgETGSGKTTQl~QyL~--edGY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 360 CRDQLLSVI-RENQVVVIVGETGSGKTTQLAQYLY--EDGYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHHHHHHHH-hhCcEEEEEecCCCCchhhhHHHHH--hcccccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 445555544 3467799999999999976433333 22222345 788999999999999999998887666766654
Q ss_pred EcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceE
Q 000114 1425 LTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRI 1504 (2158)
Q Consensus 1425 ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~ri 1504 (2158)
-..-... .-....|-++|.+.+ +|.......+.+.+.||+||||. +.-....++.-++...+. ..+.++
T Consensus 435 sIRFEdv---T~~~T~IkymTDGiL---LrEsL~d~~L~kYSviImDEAHE----RslNtDilfGllk~~lar-RrdlKl 503 (1042)
T KOG0924|consen 435 SIRFEDV---TSEDTKIKYMTDGIL---LRESLKDRDLDKYSVIIMDEAHE----RSLNTDILFGLLKKVLAR-RRDLKL 503 (1042)
T ss_pred EEEeeec---CCCceeEEEeccchH---HHHHhhhhhhhheeEEEechhhh----cccchHHHHHHHHHHHHh-hccceE
Confidence 3211000 013457899999874 44444466789999999999993 223344455555555443 458999
Q ss_pred EEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhH-hcCCCEEEEecC
Q 000114 1505 VALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPS 1583 (2158)
Q Consensus 1505 V~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~-~~~~~~IVFv~s 1583 (2158)
|..|||+ |++.++.|+|.-+ .|+. ..|..|+++.+...+..+|.... .+. .+.-++ .+.+.+|||.+.
T Consensus 504 iVtSATm-~a~kf~nfFgn~p--~f~I--pGRTyPV~~~~~k~p~eDYVeaa---vkq---~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 504 IVTSATM-DAQKFSNFFGNCP--QFTI--PGRTYPVEIMYTKTPVEDYVEAA---VKQ---AVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred EEeeccc-cHHHHHHHhCCCc--eeee--cCCccceEEEeccCchHHHHHHH---Hhh---heEeeccCCCCCEEEecCC
Confidence 9999998 8999999999433 3444 34677777777666555543321 111 111121 345779999999
Q ss_pred hHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEE
Q 000114 1584 RKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVC 1663 (2158)
Q Consensus 1584 r~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VL 1663 (2158)
+...+.++..+...+..-.. ...-...|..+++.|+..-+..+++.-..|..+++
T Consensus 573 qediE~t~~~i~~~l~ql~~-------------------------~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~I 627 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQLDS-------------------------APTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCI 627 (1042)
T ss_pred CcchhHHHHHHHHHHHhhhc-------------------------CCCCceEEEeehhhCchhhhhhhcccCCCCceeEE
Confidence 98887777655432211000 00112348899999999999999999999999999
Q ss_pred EecCccccccCCCccEEEEe-c---ceeecCCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHH
Q 000114 1664 VMSSSMCWGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKK 1735 (2158)
Q Consensus 1664 VaT~~la~Gvdlp~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k 1735 (2158)
|||++++.++.+|++.+||- | .+.|+++.+. -+|+|-....||.|||||. +.|.|+-++... .|...
T Consensus 628 vATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt---~pG~cYRlYTe~--ay~~e 702 (1042)
T KOG0924|consen 628 VATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRT---GPGTCYRLYTED--AYKNE 702 (1042)
T ss_pred EeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCC---CCcceeeehhhh--HHHhh
Confidence 99999999999999999992 2 3568777653 4588889999999999995 599999998763 34444
Q ss_pred HhhCCCc--cccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHH
Q 000114 1736 FLYDAFP--VESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTIS 1813 (2158)
Q Consensus 1736 ~l~~~~p--iES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~ 1813 (2158)
++..+.| ...+|.. .+.--.+.| .+ |.+.+.|+- .| ..+.+.+++.
T Consensus 703 ml~stvPEIqRTNl~n----vVLlLkslg----V~---dll~FdFmD-----~P----------------ped~~~~sly 750 (1042)
T KOG0924|consen 703 MLPSTVPEIQRTNLSN----VVLLLKSLG----VD---DLLKFDFMD-----PP----------------PEDNLLNSLY 750 (1042)
T ss_pred cccCCCchhhhcchhh----HHHHHHhcC----hh---hhhCCCcCC-----CC----------------HHHHHHHHHH
Confidence 5544333 3333322 222111222 12 344445542 22 2367888999
Q ss_pred HHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHH
Q 000114 1814 DLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRL 1890 (2158)
Q Consensus 1814 ~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L 1890 (2158)
.|...|+|. +.-..|++|+.|+.|+++|...+++..+-.-.+ ..+||.|+|.-+ -..+-.|+.|...-..+
T Consensus 751 ~Lw~LGAl~----~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc-~dEilsIvSmLS-vp~VF~rpker~eead~ 821 (1042)
T KOG0924|consen 751 QLWTLGALD----NTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGC-SDEILSIVSMLS-VPAVFYRPKEREEEADA 821 (1042)
T ss_pred HHHHhhccc----cCCccchhhHHhhhCCCCchHHHHHHHHhccCc-HHHHHHHHHHhc-ccceeeccccchhhhhh
Confidence 999999993 345667789999999999999999987555444 467777776533 13455676665444443
No 180
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=1.8e-23 Score=269.13 Aligned_cols=323 Identities=16% Similarity=0.133 Sum_probs=209.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+++|..+...+..| .|+.++||+|||++|.+|++-....+ ..+.+++|+..||.|.++.+..++
T Consensus 56 ~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~G-----------~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 56 RPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALTG-----------KGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred CccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHhC-----------CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 5788888888765544 49999999999999999995443332 259999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhcc---CCCccccccceEEeecccccc-c-CChhhHH--
Q 000114 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGPVLE-- 644 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l~-d-~rg~~le-- 644 (2158)
..+|++|+.++|+.+...+ ....++|+++||.++ |.+..+. .+...++.++++||||+|.++ | .|.|.+-
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 9999999999998775443 234689999999987 6665542 123456889999999999764 2 2322211
Q ss_pred ------HH---HHHHHHHHhh-----ccccccEEEE--------------------------------------------
Q 000114 645 ------SI---VARTVRQIET-----TKEHIRLVGL-------------------------------------------- 666 (2158)
Q Consensus 645 ------~i---v~r~~~~~~~-----~~~~~riv~l-------------------------------------------- 666 (2158)
.+ ...+.+.+.. ....-+-+.|
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 11 1111111110 0001122222
Q ss_pred -----------------------------------------------------------------ccccCChHHHHHHHh
Q 000114 667 -----------------------------------------------------------------SATLPNYEDVALFLR 681 (2158)
Q Consensus 667 -----------------------------------------------------------------SATlpn~~dv~~~l~ 681 (2158)
|.|... +-..|..
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~t--e~~E~~~ 359 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKT--EEEEFEK 359 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHH--HHHHHHH
Confidence 222210 0011111
Q ss_pred ccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhccc
Q 000114 682 VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761 (2158)
Q Consensus 682 ~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (2158)
.. .- -+..-+..+|+.-...--.+. .....++.++ +.+....+..+.|+||||+|...++.++..|...++..
T Consensus 360 iY-~l-~vv~IPtnkp~~R~d~~d~i~-~t~~~k~~ai---~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~- 432 (745)
T TIGR00963 360 IY-NL-EVVVVPTNRPVIRKDLSDLVY-KTEEEKWKAV---VDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPH- 432 (745)
T ss_pred Hh-CC-CEEEeCCCCCeeeeeCCCeEE-cCHHHHHHHH---HHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCe-
Confidence 10 00 011112222211100000000 0111122222 11222223458899999999999999999998876443
Q ss_pred ccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCc---
Q 000114 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA--- 838 (2158)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~--- 838 (2158)
..+||. +.+|+..+..|+.+...|+|||++++||+|++.
T Consensus 433 ------------------------------------~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V 474 (745)
T TIGR00963 433 ------------------------------------NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEV 474 (745)
T ss_pred ------------------------------------EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccch
Confidence 345887 789999999999999999999999999999998
Q ss_pred ----eEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 839 ----HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 839 ----v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
..+||+ |+.+. |...+.|+.|||||.| ..|.+..+.+..+
T Consensus 475 ~~~GGl~VI~----t~~p~------s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 475 KELGGLYVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred hhcCCcEEEe----cCCCC------cHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 558998 55554 6778999999999988 6798888887754
No 181
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.8e-23 Score=268.43 Aligned_cols=328 Identities=15% Similarity=0.118 Sum_probs=214.7
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++|+|..+++.++.+. |..+.||+|||++|.+|++..... +. .+++++||++||.|.++.+. .+...+|+
T Consensus 103 ~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~---G~--~v~VvTptreLA~qdae~~~-~l~~~lGl 173 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALA---GL--PVHVITVNDYLAERDAELMR-PLYEALGL 173 (656)
T ss_pred CCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhc---CC--eEEEEcCcHHHHHHHHHHHH-HHHhhcCC
Confidence 68899999999999865 999999999999999999977554 33 89999999999999999998 45556799
Q ss_pred EEEEEcCCcchhh-hcccCCcEEEeCHHHH-HHHHhhhh-----------------------ccccccceeEEEeccccc
Q 000114 1421 RVVELTGETAMDL-KLLEKGQIIISTPEKW-DALSRRWK-----------------------QRKYVQQVSLFIIDELHL 1475 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~-~~l~~~~IIV~TPe~l-~~l~r~~~-----------------------~~~~l~~v~llIiDEaH~ 1475 (2158)
+|+.++|+.+... +....++|+++|...+ .+.+|-.. .....+.+.+.||||+|.
T Consensus 174 sv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDS 253 (656)
T PRK12898 174 TVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADS 253 (656)
T ss_pred EEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccc
Confidence 9999999876553 3445779999999887 22333211 112345678899999995
Q ss_pred cc-CC-C------CC---h-HHHHHHHHHHHHhhcCC-------------------------------------------
Q 000114 1476 IG-GQ-G------GP---V-LEVIVSRMRYIASQVEN------------------------------------------- 1500 (2158)
Q Consensus 1476 l~-~~-~------g~---~-~e~~isrl~~i~~~~~~------------------------------------------- 1500 (2158)
++ |+ + |+ . ...++.....+..++..
T Consensus 254 iLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~ 333 (656)
T PRK12898 254 VLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREEL 333 (656)
T ss_pred eeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHH
Confidence 53 11 0 11 0 01111111111110000
Q ss_pred --------------------------------------------------------------------------CceEEE
Q 000114 1501 --------------------------------------------------------------------------KIRIVA 1506 (2158)
Q Consensus 1501 --------------------------------------------------------------------------~~riV~ 1506 (2158)
-.++.|
T Consensus 334 i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~G 413 (656)
T PRK12898 334 VRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAG 413 (656)
T ss_pred HHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhc
Confidence 124667
Q ss_pred eccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChH
Q 000114 1507 LSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRK 1585 (2158)
Q Consensus 1507 lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~ 1585 (2158)
||||.+. .+++.++++... +. .|..+|.... .....-......+.. .....+......+.|+||||+|++
T Consensus 414 mTGTa~~~~~El~~~y~l~v---v~-IPt~kp~~r~-~~~~~v~~t~~~K~~----aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPV---VR-IPTNRPSQRR-HLPDEVFLTAAAKWA----AVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred ccCcChHHHHHHHHHHCCCe---EE-eCCCCCccce-ecCCEEEeCHHHHHH----HHHHHHHHHHhcCCCEEEEeCcHH
Confidence 7777765 345666665542 11 2222332111 111000011111111 122222222234689999999999
Q ss_pred HHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEe
Q 000114 1586 YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665 (2158)
Q Consensus 1586 ~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVa 1665 (2158)
.++.++..|.. .+..+..+||.++..++..+ .|..+...|+||
T Consensus 485 ~se~L~~~L~~-----------------------------------~gi~~~~Lhg~~~~rE~~ii--~~ag~~g~VlVA 527 (656)
T PRK12898 485 ASERLSALLRE-----------------------------------AGLPHQVLNAKQDAEEAAIV--ARAGQRGRITVA 527 (656)
T ss_pred HHHHHHHHHHH-----------------------------------CCCCEEEeeCCcHHHHHHHH--HHcCCCCcEEEE
Confidence 99999876632 34568899999765555544 455556679999
Q ss_pred cCccccccCCC---ccE-----EEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHH
Q 000114 1666 SSSMCWGVPLT---AHL-----VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1666 T~~la~Gvdlp---~~~-----vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~ 1736 (2158)
|++++||+|++ .+. +|| +++.|-+...|.||+|||||.| ..|.++.++...+ +.+..|
T Consensus 528 TdmAgRGtDI~l~~~V~~~GGLhVI----------~~d~P~s~r~y~hr~GRTGRqG--~~G~s~~~is~eD-~l~~~~ 593 (656)
T PRK12898 528 TNMAGRGTDIKLEPGVAARGGLHVI----------LTERHDSARIDRQLAGRCGRQG--DPGSYEAILSLED-DLLQSF 593 (656)
T ss_pred ccchhcccCcCCccchhhcCCCEEE----------EcCCCCCHHHHHHhcccccCCC--CCeEEEEEechhH-HHHHhh
Confidence 99999999999 554 777 6778889999999999999987 7899998887644 444444
No 182
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.92 E-value=1.2e-23 Score=291.12 Aligned_cols=284 Identities=18% Similarity=0.199 Sum_probs=186.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
..+|+++|+.+++.++.+. +++++||||||||. |.++++..+.. .+.+++||+||++||.|+++.+..
T Consensus 76 g~~p~~iQ~~~i~~il~G~-d~vi~ApTGsGKT~-f~l~~~~~l~~----------~g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGD-SFAIIAPTGVGKTT-FGLAMSLFLAK----------KGKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCC-eEEEECCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeCHHHHHHHHHHHHHH
Confidence 3479999999999999886 59999999999997 55666655543 135899999999999999999999
Q ss_pred hcccCCcEE---EEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C---
Q 000114 573 RLQMYDVKV---RELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N--- 638 (2158)
Q Consensus 573 ~~~~~gi~v---~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~--- 638 (2158)
++...|+.+ +.++|+.+...+. ...++|+|+||+++........ .+++++|+||||.+.+ .
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhhccccH
Confidence 887766654 3578887655431 1358999999998733222211 1789999999999876 2
Q ss_pred --------Chh-hHHHHHHHH---------------HHHHhhcccccc--EEEEccccCChHHHH-HHHhccccCceEEe
Q 000114 639 --------RGP-VLESIVART---------------VRQIETTKEHIR--LVGLSATLPNYEDVA-LFLRVNLEKGLFYF 691 (2158)
Q Consensus 639 --------rg~-~le~iv~r~---------------~~~~~~~~~~~r--iv~lSATlpn~~dv~-~~l~~~~~~~~~~f 691 (2158)
+.+ .++.++..+ .......+...| ++++|||..+. .+. .+++... .+..
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~-~~~~~l~r~ll---~~~v 294 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPR-GKRAKLFRELL---GFEV 294 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcc-ccHHHHccccc---ceEe
Confidence 211 234332211 111112233334 67789994322 222 2222111 1112
Q ss_pred cCCcc-cccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecCh---HHHHHHHHHHHHHhhccccccccc
Q 000114 692 DNSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSR---KETAKTARAIRDTALENDTLGRFL 767 (2158)
Q Consensus 692 ~~~~r-pv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr---~~~~~~a~~L~~~~~~~~~~~~~~ 767 (2158)
..... .-.+.+.++. .... ...+ .+ +.... +.++||||+++ +.|..++..|.+.++.
T Consensus 295 ~~~~~~~r~I~~~~~~--~~~~---~~~L----~~-ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~-------- 355 (1171)
T TIGR01054 295 GGGSDTLRNVVDVYVE--DEDL---KETL----LE-IVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVK-------- 355 (1171)
T ss_pred cCccccccceEEEEEe--cccH---HHHH----HH-HHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCce--------
Confidence 11111 1122222221 1111 1111 11 22222 46899999999 9999999999875533
Q ss_pred ccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEe----chhhhhccCCCc-eEEE
Q 000114 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVI 842 (2158)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vV 842 (2158)
+...||+|+ ..+++.|++|+++|||| |++++||+|+|+ +++|
T Consensus 356 -----------------------------a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 356 -----------------------------AVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred -----------------------------EEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEE
Confidence 456699997 36889999999999999 489999999999 7999
Q ss_pred EecccccCCCC
Q 000114 843 IKGTQIYNPEK 853 (2158)
Q Consensus 843 I~~~~~yd~~~ 853 (2158)
|+ |+.|+
T Consensus 403 I~----~~~P~ 409 (1171)
T TIGR01054 403 VF----LGVPK 409 (1171)
T ss_pred EE----ECCCC
Confidence 99 77775
No 183
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=6.5e-23 Score=273.97 Aligned_cols=314 Identities=20% Similarity=0.203 Sum_probs=194.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
...|+|+|..+... -.+...+++.||||+|||.++++++.+.+..+. ..+++|..||+++++++++++.+
T Consensus 284 ~~~p~p~Q~~~~~~-~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~---------~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDAL-PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL---------ADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhh-ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC---------CCeEEEECcHHHHHHHHHHHHHH
Confidence 45899999988543 234567999999999999999888776554331 23799999999999999999886
Q ss_pred hcccC--CcEEEEEeCCCccCHh-----------------------hh-------ccccEEEcchhHH-HHHHhccCCCc
Q 000114 573 RLQMY--DVKVRELSGDQTLTRQ-----------------------QI-------EETQIIVTTPEKW-DIITRKSGDRT 619 (2158)
Q Consensus 573 ~~~~~--gi~v~~l~Gd~~~~~~-----------------------~~-------~~~~IiV~TPekl-d~l~r~~~~~~ 619 (2158)
.+... ...+..++|....... .. --.+|+|||+..+ ..+..... .
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~ 431 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--R 431 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--H
Confidence 43321 3467777776542210 00 1268999999986 23332211 1
Q ss_pred ccccc----ceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChH--HHHHHHhcc-c-c----Cc
Q 000114 620 YTQLV----KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE--DVALFLRVN-L-E----KG 687 (2158)
Q Consensus 620 ~l~~v----~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~--dv~~~l~~~-~-~----~~ 687 (2158)
+++.+ ++|||||+|.+- +.+..++.++++.... ...++|+||||+|..- .+..-.+.. . . .+
T Consensus 432 ~lR~~~La~svvIiDEVHAyD----~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YP 505 (878)
T PRK09694 432 FIRGFGLGRSVLIVDEVHAYD----AYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYP 505 (878)
T ss_pred HHHHHhhccCeEEEechhhCC----HHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccc
Confidence 22222 589999999873 2333444444444332 4577999999998521 111111110 0 0 00
Q ss_pred eE---------EecCCcc----cccceeEEEeeccCChhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHH
Q 000114 688 LF---------YFDNSYR----PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAI 753 (2158)
Q Consensus 688 ~~---------~f~~~~r----pv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L 753 (2158)
.. .+..... +.+....+......... -...+.+.+.+. ..+++++|||||++.|..+++.|
T Consensus 506 lvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~-----~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L 580 (878)
T PRK09694 506 LITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADML-----PDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRL 580 (878)
T ss_pred cccccccccceeeeccccccccCcceEEEEEeecccccc-----CHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHH
Confidence 00 0000000 11111111000000000 011233334333 34789999999999999999999
Q ss_pred HHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH----HHHHHH-hCCC---ceEEE
Q 000114 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ----LVEDLF-GDGH---VQVLV 825 (2158)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~----~v~~~F-~~g~---i~VLV 825 (2158)
++.+.. ...+..+||+++..+|. .+++.| ++|. .+|||
T Consensus 581 ~~~~~~----------------------------------~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 581 KELNNT----------------------------------QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HhhCCC----------------------------------CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 864211 02367889999999994 566677 6666 47999
Q ss_pred echhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 826 aT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
||+++++|||++ .+++|... .++..++||+||+||.+.
T Consensus 627 aTQViE~GLDId-~DvlItdl------------aPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 627 ATQVVEQSLDLD-FDWLITQL------------CPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred ECcchhheeecC-CCeEEECC------------CCHHHHHHHHhccCCCCC
Confidence 999999999995 68888621 145689999999999875
No 184
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=8e-24 Score=259.08 Aligned_cols=456 Identities=17% Similarity=0.187 Sum_probs=280.4
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEE
Q 000114 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (2158)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v 581 (2158)
++.++ ++.+.-+||||.||||||......+...-.... .. .++..|-+..|+|--|..++++...-++.+|-.|
T Consensus 263 ~IMEa-In~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~----~~-~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eV 336 (1172)
T KOG0926|consen 263 RIMEA-INENPVVIICGETGSGKTTQVPQFLYEAGFASE----QS-SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEV 336 (1172)
T ss_pred HHHHH-hhcCCeEEEecCCCCCccccchHHHHHcccCCc----cC-CCCCeeeecCchHHHHHHHHHHHHHHhccCccce
Confidence 34444 456677999999999999875544443321111 01 1234788899999999999998887666666666
Q ss_pred EEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccc--
Q 000114 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE-- 659 (2158)
Q Consensus 582 ~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~-- 659 (2158)
+.... ++......+.|.++|.+ +|+|.......+..++.|||||||.-. -....+--+++|+.+.+.....
T Consensus 337 sYqIR---fd~ti~e~T~IkFMTDG---VLLrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 337 SYQIR---FDGTIGEDTSIKFMTDG---VLLREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred eEEEE---eccccCCCceeEEecch---HHHHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhh
Confidence 54332 11122346889999999 677776666788899999999999421 2345566667777666655544
Q ss_pred ----cccEEEEccccCChHHHHHHHhc----cccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHh
Q 000114 660 ----HIRLVGLSATLPNYEDVALFLRV----NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA 731 (2158)
Q Consensus 660 ----~~riv~lSATlpn~~dv~~~l~~----~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~ 731 (2158)
+.++|.|||||. |..|-.. ....++...+.. ..|+..+|-.-+..+. ...+..+.| +|.+.+
T Consensus 410 ~~~kpLKLIIMSATLR----VsDFtenk~LFpi~pPlikVdAR--QfPVsIHF~krT~~DY--i~eAfrKtc--~IH~kL 479 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLR----VSDFTENKRLFPIPPPLIKVDAR--QFPVSIHFNKRTPDDY--IAEAFRKTC--KIHKKL 479 (1172)
T ss_pred cccCceeEEEEeeeEE----ecccccCceecCCCCceeeeecc--cCceEEEeccCCCchH--HHHHHHHHH--HHhhcC
Confidence 789999999985 3333321 112234444443 3344444432222211 111222222 355667
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccc------cccc---ccc-----------CchhHHHHHhh-----------
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDT------LGRF---LKE-----------DSVSREILQSH----------- 780 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~------~~~~---~~~-----------~~~~~~~l~~~----------- 780 (2158)
+.+.+|||+....++..+++.|+......-. .... ++. .+...+.+...
T Consensus 480 P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~ 559 (1172)
T KOG0926|consen 480 PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDS 559 (1172)
T ss_pred CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcc
Confidence 7889999999999999999999987331000 0000 000 00000000000
Q ss_pred ---------------hhcc--------Ccchhhh--------hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechh
Q 000114 781 ---------------TDMV--------KSNDLKD--------LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829 (2158)
Q Consensus 781 ---------------~~~~--------~~~~l~~--------ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~t 829 (2158)
.... .+..+.. .-+.-|..+++-|+.+++..|++.-..|..-++|||++
T Consensus 560 ~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNV 639 (1172)
T KOG0926|consen 560 GFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNV 639 (1172)
T ss_pred cchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccc
Confidence 0000 0000111 11233667789999999999999999999999999999
Q ss_pred hhhccCCCceEEEEec----ccccCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcCC
Q 000114 830 LAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (2158)
Q Consensus 830 la~GVdlP~v~vVI~~----~~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (2158)
++..+.+|++.+||++ ...||..+| ...++|.++--||+|||||.| .|.||.+++..=.+.
T Consensus 640 AETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~~-------- 708 (1172)
T KOG0926|consen 640 AETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFSN-------- 708 (1172)
T ss_pred hhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhhc--------
Confidence 9999999999999997 456888777 235789999999999999986 799999987643221
Q ss_pred CcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhH
Q 000114 902 LPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981 (2158)
Q Consensus 902 ~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~ 981 (2158)
.+.++-..||...-+. +.+ |..+-+.=+..-+++.. +.|. ...++.|...|..
T Consensus 709 ---------~Fe~fS~PEIlk~Pve---~lv-------LqMKsMnI~kVvnFPFP---tpPd-----~~~L~~Aer~L~~ 761 (1172)
T KOG0926|consen 709 ---------DFEEFSLPEILKKPVE---SLV-------LQMKSMNIDKVVNFPFP---TPPD-----RSALEKAERRLKA 761 (1172)
T ss_pred ---------chhhhccHHHhhCcHH---HHH-------HHHHhcCccceecCCCC---CCcc-----HHHHHHHHHHHHH
Confidence 1111111222222111 111 01111111222222221 1111 1356789999999
Q ss_pred CCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCC
Q 000114 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT 1023 (2158)
Q Consensus 982 ~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~ 1023 (2158)
.|.++.+ | .+|+||+.||+|+++|+-.+++.-.-...
T Consensus 762 LgALd~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 762 LGALDSN---G--GLTKLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred hcccccc---C--CcccccchhcccccChhHHHHHHHHHhhc
Confidence 9999853 3 78999999999999999888887544333
No 185
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.5e-24 Score=234.75 Aligned_cols=304 Identities=18% Similarity=0.245 Sum_probs=215.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|+++.++++-. ||.+|..+|.+||+....|-+ ++..|..|-|||.+|.++.++.+.. -.|.+.+++++.||+||-|
T Consensus 49 lkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiep--v~g~vsvlvmchtrelafq 125 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEP--VDGQVSVLVMCHTRELAFQ 125 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCC--CCCeEEEEEEeccHHHHHH
Confidence 55667777766 899999999999999888666 9999999999999999999988865 2445688999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEcCCcch--hhhcccCC-cEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1406 RYRDWEIKFGQG-LGMRVVELTGETAM--DLKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1406 ~~~~~~~~f~~~-~g~~v~~ltG~~~~--~~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
+.+++. +|+++ .++++..+.|+... +.+.+.++ +|+|+||+++..+.|. ....+++++.+|+|||+.+.++-
T Consensus 126 i~~ey~-rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~--k~l~lk~vkhFvlDEcdkmle~l- 201 (387)
T KOG0329|consen 126 ISKEYE-RFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN--RSLNLKNVKHFVLDECDKMLEQL- 201 (387)
T ss_pred HHHHHH-HHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh--ccCchhhcceeehhhHHHHHHHH-
Confidence 999988 78776 67899999999765 45555555 9999999999999987 45679999999999999776431
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcC
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
.....+..|.+.++...|+..+|||+++ .+-+...+-..+..+|.-.. . ...+.+.......-.-..-+
T Consensus 202 ----DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE----~--KLtLHGLqQ~YvkLke~eKN 271 (387)
T KOG0329|consen 202 ----DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDE----A--KLTLHGLQQYYVKLKENEKN 271 (387)
T ss_pred ----HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccch----h--hhhhhhHHHHHHhhhhhhhh
Confidence 0223344555667889999999999976 23333322222222221100 0 11111111111000001111
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
+..+.. +.. ..-.+++||+.|....
T Consensus 272 rkl~dL-Ld~-LeFNQVvIFvKsv~Rl----------------------------------------------------- 296 (387)
T KOG0329|consen 272 RKLNDL-LDV-LEFNQVVIFVKSVQRL----------------------------------------------------- 296 (387)
T ss_pred hhhhhh-hhh-hhhcceeEeeehhhhh-----------------------------------------------------
Confidence 122221 121 3346788887665310
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
+ | ..+ +|||+.++||+|+-.+++|+ |++.|-+...|+||+|||||-| ..|.
T Consensus 297 ---~----------f---~kr-~vat~lfgrgmdiervNi~~----------NYdmp~~~DtYlHrv~rAgrfG--tkgl 347 (387)
T KOG0329|consen 297 ---S----------F---QKR-LVATDLFGRGMDIERVNIVF----------NYDMPEDSDTYLHRVARAGRFG--TKGL 347 (387)
T ss_pred ---h----------h---hhh-hHHhhhhccccCcccceeee----------ccCCCCCchHHHHHhhhhhccc--cccc
Confidence 0 2 123 89999999999999999999 7888889999999999999976 8899
Q ss_pred EEEEecCChHH
Q 000114 1721 CVILCHAPRKE 1731 (2158)
Q Consensus 1721 ~iil~~~~~~~ 1731 (2158)
++.++......
T Consensus 348 aitfvs~e~da 358 (387)
T KOG0329|consen 348 AITFVSDENDA 358 (387)
T ss_pred eeehhcchhhH
Confidence 99998876543
No 186
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.91 E-value=3.9e-23 Score=267.97 Aligned_cols=324 Identities=15% Similarity=0.151 Sum_probs=201.5
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
-.++|+|.|++..+..... .++.++||+|||++|.+|++..... +. .++|++|+++||.|.++.+. .+...+|
T Consensus 67 lglrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~---g~--~V~VVTpn~yLA~Rdae~m~-~l~~~LG 139 (762)
T TIGR03714 67 LGMFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALT---GK--GAMLVTTNDYLAKRDAEEMG-PVYEWLG 139 (762)
T ss_pred cCCCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhc---CC--ceEEeCCCHHHHHHHHHHHH-HHHhhcC
Confidence 3567888888877654444 7999999999999999998765544 33 69999999999999999887 5555679
Q ss_pred cEEEEEcCCc-----chh-hhcccCCcEEEeCHHHH-HHHHhhh----hccccccceeEEEecccccccC-C-C------
Q 000114 1420 MRVVELTGET-----AMD-LKLLEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIGG-Q-G------ 1480 (2158)
Q Consensus 1420 ~~v~~ltG~~-----~~~-~~~l~~~~IIV~TPe~l-~~l~r~~----~~~~~l~~v~llIiDEaH~l~~-~-~------ 1480 (2158)
++|+...++. ... .+....++|+++||+++ .+.++.. .....++.+.++|+||||.++- + +
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 9998877652 111 23345789999999999 4444321 1123467899999999997732 1 1
Q ss_pred CChH--HHHHHHHHHHHhhcCC--------CceEEEec------------------------------------------
Q 000114 1481 GPVL--EVIVSRMRYIASQVEN--------KIRIVALS------------------------------------------ 1508 (2158)
Q Consensus 1481 g~~~--e~~isrl~~i~~~~~~--------~~riV~lS------------------------------------------ 1508 (2158)
|+.- ..+...+..+...+.. +.+-|.|+
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 1110 1122222222222211 12222222
Q ss_pred -------------------------------------------------------------------cCCCC-hHHHHHH
Q 000114 1509 -------------------------------------------------------------------TSLAN-AKDLGEW 1520 (2158)
Q Consensus 1509 -------------------------------------------------------------------ATl~n-~~dl~~w 1520 (2158)
.|... ..++.+.
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 22111 0111111
Q ss_pred hccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhccc
Q 000114 1521 IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSM 1600 (2158)
Q Consensus 1521 l~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~ 1600 (2158)
.+. .++ .-|..+|+...-. ...-........ ......+.+....+.|+||||+|++.++.++..|..
T Consensus 380 Y~l---~v~-~IPt~kp~~r~d~-~d~i~~~~~~K~----~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~---- 446 (762)
T TIGR03714 380 YSL---SVV-KIPTNKPIIRIDY-PDKIYATLPEKL----MATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLR---- 446 (762)
T ss_pred hCC---CEE-EcCCCCCeeeeeC-CCeEEECHHHHH----HHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHH----
Confidence 110 011 1122222211100 000000000111 112222323335688999999999999888866632
Q ss_pred CCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCC----
Q 000114 1601 DGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT---- 1676 (2158)
Q Consensus 1601 ~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp---- 1676 (2158)
.+..+..+||.+...+|..+.+.++.| +|+|||++++||+|+|
T Consensus 447 -------------------------------~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~ 493 (762)
T TIGR03714 447 -------------------------------EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKG 493 (762)
T ss_pred -------------------------------CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCcc
Confidence 244578899999999998888877776 7999999999999999
Q ss_pred -----ccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1677 -----AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1677 -----~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
++.||+ ++..|-...+ .||+|||||.| ..|.++.+++..+
T Consensus 494 v~~~GGL~vIi----------t~~~ps~rid-~qr~GRtGRqG--~~G~s~~~is~eD 538 (762)
T TIGR03714 494 VAELGGLAVIG----------TERMENSRVD-LQLRGRSGRQG--DPGSSQFFVSLED 538 (762)
T ss_pred ccccCCeEEEE----------ecCCCCcHHH-HHhhhcccCCC--CceeEEEEEccch
Confidence 888888 3444444555 99999999987 7898988887654
No 187
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=5.5e-23 Score=256.61 Aligned_cols=316 Identities=22% Similarity=0.338 Sum_probs=228.6
Q ss_pred CCCHHHHHHHHHHhcC-----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1341 HFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~-----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
.+|.-|.+|+..+... .-|-++.+.-|||||+++.++++..+.. +. ++..++||--||.|.+..+.+.|.
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~--Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GY--QAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CC--eeEEeccHHHHHHHHHHHHHHHhh
Confidence 6999999999998751 2378999999999999999999988866 44 899999999999999999998777
Q ss_pred CCCCcEEEEEcCCcchhhh-----cccC--CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1416 QGLGMRVVELTGETAMDLK-----LLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~-----~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
.. |++|..+||......+ .+.+ .+|+|+|-.- +. ....+++++|+|+||-|+.+ +-
T Consensus 337 ~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL----iQ---d~V~F~~LgLVIiDEQHRFG---------V~ 399 (677)
T COG1200 337 PL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL----IQ---DKVEFHNLGLVIIDEQHRFG---------VH 399 (677)
T ss_pred hc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh----hh---cceeecceeEEEEecccccc---------HH
Confidence 64 8999999998765422 3333 4999999542 22 34568899999999999997 44
Q ss_pred HHHHHHHhhcCC-CceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHH
Q 000114 1489 SRMRYIASQVEN-KIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTA 1566 (2158)
Q Consensus 1489 srl~~i~~~~~~-~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~ 1566 (2158)
.|.....+ +. .+.++.||||+-+ .-.+.-|-..+...+-..+|...|+.. .....+ . ....+..
T Consensus 400 QR~~L~~K--G~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T--~~i~~~--~--------~~~v~e~ 465 (677)
T COG1200 400 QRLALREK--GEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITT--VVIPHE--R--------RPEVYER 465 (677)
T ss_pred HHHHHHHh--CCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEE--EEeccc--c--------HHHHHHH
Confidence 55443322 33 5789999999643 323333333333334444555555432 222111 1 2245556
Q ss_pred HHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh-cccEEEecCCCCH
Q 000114 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL-RHGVGYLHEGLNK 1645 (2158)
Q Consensus 1567 i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l-~~gv~~~H~~l~~ 1645 (2158)
+...+..++++.+.||-.++.+.+-..- ..... ..|+..+ ...|+.+||.|+.
T Consensus 466 i~~ei~~GrQaY~VcPLIeESE~l~l~~---------------------a~~~~-----~~L~~~~~~~~vgL~HGrm~~ 519 (677)
T COG1200 466 IREEIAKGRQAYVVCPLIEESEKLELQA---------------------AEELY-----EELKSFLPELKVGLVHGRMKP 519 (677)
T ss_pred HHHHHHcCCEEEEEeccccccccchhhh---------------------HHHHH-----HHHHHHcccceeEEEecCCCh
Confidence 6777788999999999887665222000 00001 1223333 4559999999999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
.++..|++.|++|+++|||||.+.+.|||+|+.+++| .+++. -+-++++-|--||+||. +..+.|++++
T Consensus 520 ~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV----Ie~AE-----RFGLaQLHQLRGRVGRG--~~qSyC~Ll~ 588 (677)
T COG1200 520 AEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV----IENAE-----RFGLAQLHQLRGRVGRG--DLQSYCVLLY 588 (677)
T ss_pred HHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE----Eechh-----hhhHHHHHHhccccCCC--CcceEEEEEe
Confidence 9999999999999999999999999999999877765 22221 13588999999999996 4889999999
Q ss_pred cCCh
Q 000114 1726 HAPR 1729 (2158)
Q Consensus 1726 ~~~~ 1729 (2158)
.++.
T Consensus 589 ~~~~ 592 (677)
T COG1200 589 KPPL 592 (677)
T ss_pred CCCC
Confidence 8876
No 188
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=4.6e-23 Score=270.22 Aligned_cols=325 Identities=17% Similarity=0.130 Sum_probs=207.2
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+++|..+...+..| .|+.+.||+|||++|.+|++..... +. .+.+++||+.||.|.+..+. .+...+|+
T Consensus 78 ~p~~vQl~~~~~l~~G---~Iaem~TGeGKTL~a~lp~~l~al~---G~--~v~VvTpt~~LA~qd~e~~~-~l~~~lGl 148 (790)
T PRK09200 78 RPYDVQLIGALVLHEG---NIAEMQTGEGKTLTATMPLYLNALE---GK--GVHLITVNDYLAKRDAEEMG-QVYEFLGL 148 (790)
T ss_pred CCchHHHHhHHHHcCC---ceeeecCCCcchHHHHHHHHHHHHc---CC--CeEEEeCCHHHHHHHHHHHH-HHHhhcCC
Confidence 7888888887766543 3999999999999999999865554 33 79999999999999999988 45556799
Q ss_pred EEEEEcCCcc-hh-hhcccCCcEEEeCHHHH-HHHHhhh----hccccccceeEEEeccccccc-CC-C------CCh--
Q 000114 1421 RVVELTGETA-MD-LKLLEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIG-GQ-G------GPV-- 1483 (2158)
Q Consensus 1421 ~v~~ltG~~~-~~-~~~l~~~~IIV~TPe~l-~~l~r~~----~~~~~l~~v~llIiDEaH~l~-~~-~------g~~-- 1483 (2158)
+|+.++|+.+ .. .+....++|+++||+.+ .++++.. .....++.+.++||||||.++ ++ + |+.
T Consensus 149 ~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~ 228 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRV 228 (790)
T ss_pred eEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCcc
Confidence 9999999887 43 44556789999999998 3333321 122356789999999999654 21 1 111
Q ss_pred HHHHHHHHHHHHhhcCC--------CceEEEeccC----------CCC---h--HHHHHHhcc-----------------
Q 000114 1484 LEVIVSRMRYIASQVEN--------KIRIVALSTS----------LAN---A--KDLGEWIGA----------------- 1523 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~--------~~riV~lSAT----------l~n---~--~dl~~wl~~----------------- 1523 (2158)
-..+......+..++.. ..+.+.++.. ++| . ..+..|+..
T Consensus 229 ~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~ 308 (790)
T PRK09200 229 QSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVY 308 (790)
T ss_pred ccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 01122222222222111 1222222210 000 0 011112110
Q ss_pred ---------------------------------------------------------------------------CCCce
Q 000114 1524 ---------------------------------------------------------------------------TSHGL 1528 (2158)
Q Consensus 1524 ---------------------------------------------------------------------------~~~~i 1528 (2158)
-.-.+
T Consensus 309 ~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v 388 (790)
T PRK09200 309 DGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEV 388 (790)
T ss_pred CCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcE
Confidence 00011
Q ss_pred EecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccc
Q 000114 1529 FNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2158)
Q Consensus 1529 ~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~ 1608 (2158)
... |..+|....-. ...-........ ......+......+.|+||||+|++.++.++..|..
T Consensus 389 ~~I-Pt~kp~~r~d~-~~~i~~~~~~K~----~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~------------ 450 (790)
T PRK09200 389 VQI-PTNRPIIRIDY-PDKVFVTLDEKY----KAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE------------ 450 (790)
T ss_pred EEC-CCCCCcccccC-CCeEEcCHHHHH----HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------
Confidence 111 22222211000 000000000111 112222222224688999999999999998876632
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCC---CccE-----E
Q 000114 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPL---TAHL-----V 1680 (2158)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdl---p~~~-----v 1680 (2158)
.+..+..+||.++..++..+...+..| +|+|||++++||+|+ |.+. +
T Consensus 451 -----------------------~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~ 505 (790)
T PRK09200 451 -----------------------AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLA 505 (790)
T ss_pred -----------------------CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcE
Confidence 245678999999999998888887766 799999999999999 6887 8
Q ss_pred EEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1681 VVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1681 VI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
|| +++.|.+...|.||+|||||.| ..|.++.++...+
T Consensus 506 VI----------~~d~p~s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 506 VI----------GTERMESRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred EE----------eccCCCCHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 88 6778889999999999999987 7888888887654
No 189
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=2.5e-23 Score=259.72 Aligned_cols=315 Identities=24% Similarity=0.346 Sum_probs=223.6
Q ss_pred CCCHHHHHHHHHHHcC---CC--cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSS---AD--NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---~~--nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
+||.-|++++..+... .. |=|+++.-|||||++|+++++..+.. ++++..+|||--||.|-+..
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-----------G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-----------GYQAALMAPTEILAEQHYES 330 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-----------CCeeEEeccHHHHHHHHHHH
Confidence 7899999999988753 22 56999999999999999999999875 45899999999999999999
Q ss_pred HHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhh
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~ 642 (2158)
+.+++.++|++|..+||...-..+. ....+|+|+|..- .. +...++++.|+||||=|+.+-..
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL----iQ---d~V~F~~LgLVIiDEQHRFGV~Q--- 400 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL----IQ---DKVEFHNLGLVIIDEQHRFGVHQ--- 400 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh----hh---cceeecceeEEEEeccccccHHH---
Confidence 9999999999999999987655432 2468999999762 22 33567889999999999865211
Q ss_pred HHHHHHHHHHHHhhccc-cccEEEEccccCChHHHHHHHhccccCceE-EecCCcccccceeEEEeeccCChhHHHHHhh
Q 000114 643 LESIVARTVRQIETTKE-HIRLVGLSATLPNYEDVALFLRVNLEKGLF-YFDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 720 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~-~~riv~lSATlpn~~dv~~~l~~~~~~~~~-~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~ 720 (2158)
| ..+...+. .+.++.||||. =+..++--.-.+...... .....- .|+....+ ......+
T Consensus 401 ------R--~~L~~KG~~~Ph~LvMTATP-IPRTLAlt~fgDldvS~IdElP~GR--kpI~T~~i--~~~~~~~------ 461 (677)
T COG1200 401 ------R--LALREKGEQNPHVLVMTATP-IPRTLALTAFGDLDVSIIDELPPGR--KPITTVVI--PHERRPE------ 461 (677)
T ss_pred ------H--HHHHHhCCCCCcEEEEeCCC-chHHHHHHHhccccchhhccCCCCC--CceEEEEe--ccccHHH------
Confidence 1 11223344 68899999993 334444333222211000 000111 23333322 2222112
Q ss_pred HHHHHHHH-HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc-cCCeE
Q 000114 721 DLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL-PYGFA 798 (2158)
Q Consensus 721 ~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll-~~gv~ 798 (2158)
+++.+. +..+++|+.+.|+-..+.+++--.-.... -..|+..+ .+.|+
T Consensus 462 --v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~----------------------------~~~L~~~~~~~~vg 511 (677)
T COG1200 462 --VYERIREEIAKGRQAYVVCPLIEESEKLELQAAEEL----------------------------YEELKSFLPELKVG 511 (677)
T ss_pred --HHHHHHHHHHcCCEEEEEeccccccccchhhhHHHH----------------------------HHHHHHHcccceeE
Confidence 222332 23358899999998877663321000000 00111122 34589
Q ss_pred EecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCC
Q 000114 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (2158)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (2158)
..||.|+..++..|++.|++|+++|||||.+.+.|||+|+.+++|- +|++. +..+++.|--||.||.+ .
T Consensus 512 L~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI----e~AER-----FGLaQLHQLRGRVGRG~--~ 580 (677)
T COG1200 512 LVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGRVGRGD--L 580 (677)
T ss_pred EEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE----echhh-----hhHHHHHHhccccCCCC--c
Confidence 9999999999999999999999999999999999999999999775 78775 58999999999999965 6
Q ss_pred ccEEEEEcCCCc
Q 000114 879 YGEGIIITGHSE 890 (2158)
Q Consensus 879 ~G~~iil~~~~~ 890 (2158)
.+.|++++....
T Consensus 581 qSyC~Ll~~~~~ 592 (677)
T COG1200 581 QSYCVLLYKPPL 592 (677)
T ss_pred ceEEEEEeCCCC
Confidence 689999988765
No 190
>PRK09694 helicase Cas3; Provisional
Probab=99.91 E-value=6.8e-23 Score=273.84 Aligned_cols=316 Identities=18% Similarity=0.200 Sum_probs=195.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC-
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG- 1417 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~- 1417 (2158)
...++|+|+.+.... .++..++|.||||+|||.+++.++.+.... ...+ +++|..||+++++++++++++.+...
T Consensus 284 ~~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~--gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLAD--SIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCC--eEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 448999999885432 346679999999999999998877765544 2233 89999999999999999987533222
Q ss_pred CCcEEEEEcCCcchhh-----------------------hccc-------CCcEEEeCHHHHHHHHhhhhccccccce--
Q 000114 1418 LGMRVVELTGETAMDL-----------------------KLLE-------KGQIIISTPEKWDALSRRWKQRKYVQQV-- 1465 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~-----------------------~~l~-------~~~IIV~TPe~l~~l~r~~~~~~~l~~v-- 1465 (2158)
...++..++|....+. ..+. -++|+|||+.++..-.-..+ ...++.+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~k-h~~lR~~~L 438 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVK-HRFIRGFGL 438 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccc-hHHHHHHhh
Confidence 1246777777543110 1111 25999999999863222211 1122333
Q ss_pred --eEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCC----c---eE-----
Q 000114 1466 --SLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSH----G---LF----- 1529 (2158)
Q Consensus 1466 --~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~----~---i~----- 1529 (2158)
++|||||+|.+.......++.++ +.+. ....++|+||||+|.. +.+.+-++.... . ..
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L---~~l~---~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~ 512 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVL---KAQA---QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGV 512 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHH---HHHH---hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccc
Confidence 48999999988432222223333 2222 2357799999999863 233332222100 0 00
Q ss_pred ----ec--C--CCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccC
Q 000114 1530 ----NF--P--PGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601 (2158)
Q Consensus 1530 ----~f--~--~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~ 1601 (2158)
.+ . +...+.+..+.+........ .-....+..+...+..+++++|||||++.|..++..|.....
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-----~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-- 585 (878)
T PRK09694 513 NGAQRFDLSAHPEQLPARFTIQLEPICLADM-----LPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNN-- 585 (878)
T ss_pred ccceeeeccccccccCcceEEEEEeeccccc-----cCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCC--
Confidence 00 0 00001111121111100000 001233445555556788999999999999999977742110
Q ss_pred CcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHH----HHHHHH-HcCC---ceEEEecCcccccc
Q 000114 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE----VVSALF-EAGK---IKVCVMSSSMCWGV 1673 (2158)
Q Consensus 1602 ~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~----~v~~~F-~~g~---i~VLVaT~~la~Gv 1673 (2158)
....+..+||.++..+|. .+++.| ++|+ ..|||||+++++|+
T Consensus 586 ------------------------------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GL 635 (878)
T PRK09694 586 ------------------------------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSL 635 (878)
T ss_pred ------------------------------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhee
Confidence 012488999999999994 566677 6666 47999999999999
Q ss_pred CCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1674 PLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1674 dlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
|++. .++|. ...|+..++||+||+||.+.
T Consensus 636 DId~-DvlIt------------dlaPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 636 DLDF-DWLIT------------QLCPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred ecCC-CeEEE------------CCCCHHHHHHHHhccCCCCC
Confidence 9976 45551 23478999999999999874
No 191
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=3e-23 Score=269.90 Aligned_cols=420 Identities=18% Similarity=0.197 Sum_probs=277.6
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh-cccCC
Q 000114 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR-LQMYD 578 (2158)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~-~~~~g 578 (2158)
+.+.+-.+++.+..++|+|.||||||......||....... ...+|++..|+|--|..+++++..- ....|
T Consensus 177 ~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 177 MRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--------AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--------CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 34444456777888999999999999999999988765542 3557999999999999998887743 33345
Q ss_pred cEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhcc
Q 000114 579 VKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (2158)
Q Consensus 579 i~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~ 658 (2158)
-.|+--.+- ..+....+.+.+||.+ ++.|.......+..+..||+||+|.=.- ....+-.++..++ ...
T Consensus 249 ~~VGYqvrl---~~~~s~~t~L~fcTtG---vLLr~L~~~~~l~~vthiivDEVHER~i-~~DflLi~lk~lL----~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRL---ESKRSRETRLLFCTTG---VLLRRLQSDPTLSGVTHIIVDEVHERSI-NTDFLLILLKDLL----PRN 317 (924)
T ss_pred CeeeEEEee---ecccCCceeEEEecHH---HHHHHhccCcccccCceeeeeeEEEccC-CcccHHHHHHHHh----hhC
Confidence 444433332 2222335889999999 5666665567889999999999995321 1122333333332 245
Q ss_pred ccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEE------------------eeccC----------
Q 000114 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI------------------GIQVK---------- 710 (2158)
Q Consensus 659 ~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~------------------~~~~~---------- 710 (2158)
+++++|+||||+ |.+.+..+++.. ++......-.|+ ..+|. +....
T Consensus 318 p~LkvILMSAT~-dae~fs~YF~~~---pvi~i~grtfpV--~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 318 PDLKVILMSATL-DAELFSDYFGGC---PVITIPGRTFPV--KEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred CCceEEEeeeec-chHHHHHHhCCC---ceEeecCCCcch--HHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 899999999998 578888888743 233322222222 11110 00000
Q ss_pred ChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 711 ~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
... ....+...+...+.+....+.+|||.++..+...+...|.........
T Consensus 392 ~~~-id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~---------------------------- 442 (924)
T KOG0920|consen 392 EPE-IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS---------------------------- 442 (924)
T ss_pred ccc-ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc----------------------------
Confidence 000 000111112222223333689999999999999999988765432221
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecc----cccCCCCC----ccccCCHH
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKG----AWTELSPL 862 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g----~~~~~s~~ 862 (2158)
...-|...|+.|+..+++.|++....|..+|++||++++.+|.+|+|.+||+.. ..||+..+ .-.++|.+
T Consensus 443 --~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkA 520 (924)
T KOG0920|consen 443 --LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKA 520 (924)
T ss_pred --cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeecccc
Confidence 012255669999999999999999999999999999999999999999999974 45888765 33678999
Q ss_pred HHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhc-CCCcccchhhHhhHHHHHHHHHhc-cccChHHHHHHHHhhHH
Q 000114 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN-QQLPIESQFVSKLADQLNAEIVLG-TVQNAKEACNWIGYTYL 940 (2158)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~-~~~pieS~l~~~l~d~lnaeI~~~-~i~~~~~~~~wl~~t~~ 940 (2158)
...||.|||||. ..|.||-+++... |.+++. .+.| +.++..|- |+++. .+-...++..||+
T Consensus 521 na~QR~GRAGRv---~~G~cy~L~~~~~---~~~~~~~~q~P------EilR~pL~-~l~L~iK~l~~~~~~~fLs---- 583 (924)
T KOG0920|consen 521 NAKQRRGRAGRV---RPGICYHLYTRSR---YEKLMLAYQLP------EILRTPLE-ELCLHIKVLEQGSIKAFLS---- 583 (924)
T ss_pred chHHhcccccCc---cCCeeEEeechhh---hhhcccccCCh------HHHhChHH-HhhheeeeccCCCHHHHHH----
Confidence 999999999997 4799999988754 333332 3333 22222222 22221 1222223333432
Q ss_pred HHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHh
Q 000114 941 YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNE 1018 (2158)
Q Consensus 941 ~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~ 1018 (2158)
+++.-| ..+.|..|+..|.+.|.+..++ .+|+||+.+|.+++++.--++..-
T Consensus 584 --kaldpP-------------------~~~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~ 635 (924)
T KOG0920|consen 584 --KALDPP-------------------PADAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLF 635 (924)
T ss_pred --HhcCCC-------------------ChHHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhhee
Confidence 222222 1256889999999999998654 899999999999999987766543
No 192
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.90 E-value=2.3e-22 Score=259.02 Aligned_cols=322 Identities=16% Similarity=0.097 Sum_probs=207.2
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+++|..+...+..| .|..++||+|||++|.+|++-.... +. .+.+++||+.||.|.++.+. .+.+.+|+
T Consensus 56 ~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~VvTpt~~LA~qdae~~~-~l~~~LGL 126 (745)
T TIGR00963 56 RPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALT---GK--GVHVVTVNDYLAQRDAEWMG-QVYRFLGL 126 (745)
T ss_pred CccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHh---CC--CEEEEcCCHHHHHHHHHHHH-HHhccCCC
Confidence 5677777777666443 3999999999999999999633333 33 68999999999999999888 55566799
Q ss_pred EEEEEcCCcchhh-hcccCCcEEEeCHHHH-HHHHhhhh----ccccccceeEEEecccccccC-C-------CCC--hH
Q 000114 1421 RVVELTGETAMDL-KLLEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIGG-Q-------GGP--VL 1484 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~-~~l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~llIiDEaH~l~~-~-------~g~--~~ 1484 (2158)
+|+.++|+.+... +....++|+++||.++ .+++|... ....++.+.++||||+|.++- + .|+ .-
T Consensus 127 sv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~ 206 (745)
T TIGR00963 127 SVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKS 206 (745)
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCc
Confidence 9999999877653 3334579999999998 66666531 123578899999999997652 1 122 11
Q ss_pred HHHHHHHHHHHhhcC--------CCceEEEec------------------------------------------------
Q 000114 1485 EVIVSRMRYIASQVE--------NKIRIVALS------------------------------------------------ 1508 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~--------~~~riV~lS------------------------------------------------ 1508 (2158)
..++.....+...+. .+.+.|.|+
T Consensus 207 ~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d 286 (745)
T TIGR00963 207 TELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRD 286 (745)
T ss_pred hHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 111111222222111 011222222
Q ss_pred -------------------------------------------------------------cCCCC-hHHHHHHhccCCC
Q 000114 1509 -------------------------------------------------------------TSLAN-AKDLGEWIGATSH 1526 (2158)
Q Consensus 1509 -------------------------------------------------------------ATl~n-~~dl~~wl~~~~~ 1526 (2158)
.|... ..++.+..+..
T Consensus 287 ~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~-- 364 (745)
T TIGR00963 287 GEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLE-- 364 (745)
T ss_pred CEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCC--
Confidence 22211 00111111110
Q ss_pred ceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccc
Q 000114 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2158)
Q Consensus 1527 ~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~ 1606 (2158)
++. -|..+|....- .+..-+..... ..+.....+......+.|+||||+|...++.++..|..
T Consensus 365 -vv~-IPtnkp~~R~d----~~d~i~~t~~~-k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~---------- 427 (745)
T TIGR00963 365 -VVV-VPTNRPVIRKD----LSDLVYKTEEE-KWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKE---------- 427 (745)
T ss_pred -EEE-eCCCCCeeeee----CCCeEEcCHHH-HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH----------
Confidence 111 12222211100 00000000000 01122233333347899999999999999999876632
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCc-------cE
Q 000114 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTA-------HL 1679 (2158)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~-------~~ 1679 (2158)
.+.....+||. +.+|...+..|+.+...|+|||++++||+|++. ..
T Consensus 428 -------------------------~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl 480 (745)
T TIGR00963 428 -------------------------RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGL 480 (745)
T ss_pred -------------------------cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCc
Confidence 23346788998 778999999999999999999999999999998 55
Q ss_pred EEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1680 VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1680 vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
+|| +.+.|-+...+.|+.|||||.| ..|.+..+++..+
T Consensus 481 ~VI----------~t~~p~s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 481 YVI----------GTERHESRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred EEE----------ecCCCCcHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 888 6678889999999999999998 6788887777664
No 193
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.89 E-value=2.4e-21 Score=219.60 Aligned_cols=316 Identities=20% Similarity=0.270 Sum_probs=222.6
Q ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
.+++|.|..+-+.++ +.....||.|-||+|||.+..-+|-..+.+ ++ ++.+.+|+...|.+.+.+++..|.
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~--~vciASPRvDVclEl~~Rlk~aF~- 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GG--RVCIASPRVDVCLELYPRLKQAFS- 169 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CC--eEEEecCcccchHHHHHHHHHhhc-
Confidence 479999998877764 356679999999999999876666665555 55 899999999999999999998886
Q ss_pred CCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHh
Q 000114 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~ 1496 (2158)
+..+..++|+..... .++++|+|..++..+ -+.++++||||+|...-...+.+...+...+.
T Consensus 170 --~~~I~~Lyg~S~~~f----r~plvVaTtHQLlrF---------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark--- 231 (441)
T COG4098 170 --NCDIDLLYGDSDSYF----RAPLVVATTHQLLRF---------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK--- 231 (441)
T ss_pred --cCCeeeEecCCchhc----cccEEEEehHHHHHH---------HhhccEEEEeccccccccCCHHHHHHHHHhhc---
Confidence 468899999876553 379999998875432 25689999999997754445556555554442
Q ss_pred hcCCCceEEEeccCCCChHHHHHHhccCCCceEec----CCCCcccccEEEEecccccchHHHHH--hcChHHHHHHHHh
Q 000114 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNF----PPGVRPVPLEIHIQGVDITNFEARMQ--AMTKPTFTAIVQH 1570 (2158)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f----~~~~rpv~l~~~i~~~~~~~~~~~~~--~~~k~~~~~i~~~ 1570 (2158)
..--+|.||||.++. +..-+.......... +..--|+|-.+.+..+ ...+. .+....+..+..+
T Consensus 232 ---~~g~~IylTATp~k~--l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~-----~k~l~r~kl~~kl~~~lekq 301 (441)
T COG4098 232 ---KEGATIYLTATPTKK--LERKILKGNLRILKLPARFHGKPLPVPKFVWIGNW-----NKKLQRNKLPLKLKRWLEKQ 301 (441)
T ss_pred ---ccCceEEEecCChHH--HHHHhhhCCeeEeecchhhcCCCCCCCceEEeccH-----HHHhhhccCCHHHHHHHHHH
Confidence 355679999998753 222221111111111 1111233333332211 11111 1233445556666
Q ss_pred HhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHH
Q 000114 1571 AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2158)
Q Consensus 1571 ~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~ 1650 (2158)
...+.|++||+|+.+..+.+|..|.... -...++..|+. ..+|..
T Consensus 302 ~~~~~P~liF~p~I~~~eq~a~~lk~~~---------------------------------~~~~i~~Vhs~--d~~R~E 346 (441)
T COG4098 302 RKTGRPVLIFFPEIETMEQVAAALKKKL---------------------------------PKETIASVHSE--DQHRKE 346 (441)
T ss_pred HhcCCcEEEEecchHHHHHHHHHHHhhC---------------------------------Cccceeeeecc--CccHHH
Confidence 6788999999999999998886652211 12236778875 567888
Q ss_pred HHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChH
Q 000114 1651 VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2158)
Q Consensus 1651 v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~ 1730 (2158)
..+.|++|++.+||+|.+++||+.+|.+.|.|.|.. | .-++-+.++|++||+||.-....|.++.|-....+
T Consensus 347 kV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgae------h--~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~sk 418 (441)
T COG4098 347 KVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAE------H--RVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSK 418 (441)
T ss_pred HHHHHHcCceEEEEEeehhhcccccccceEEEecCC------c--ccccHHHHHHHhhhccCCCcCCCCcEEEEeccchH
Confidence 999999999999999999999999999999997654 2 34578899999999999875667877777666554
Q ss_pred HH
Q 000114 1731 EY 1732 (2158)
Q Consensus 1731 ~~ 1732 (2158)
..
T Consensus 419 aM 420 (441)
T COG4098 419 AM 420 (441)
T ss_pred HH
Confidence 43
No 194
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.89 E-value=5.7e-22 Score=274.66 Aligned_cols=288 Identities=17% Similarity=0.133 Sum_probs=180.9
Q ss_pred hHHHHHhc--CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1330 PLYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1330 ~~~~~l~~--gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
..+.++|. ....|+|+|.++++.++.+. +++++||||||||. |.+++...+.. .+ ++++||+||++||.|++
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~-d~vi~ApTGsGKT~-f~l~~~~~l~~--~g--~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGD-SFAIIAPTGVGKTT-FGLAMSLFLAK--KG--KRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCC-eEEEECCCCCCHHH-HHHHHHHHHHh--cC--CeEEEEeCHHHHHHHHH
Confidence 34566665 24579999999999999865 59999999999997 55666655543 23 39999999999999999
Q ss_pred HHHHHHhcCCCCcE---EEEEcCCcchhhh-----ccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1408 RDWEIKFGQGLGMR---VVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1408 ~~~~~~f~~~~g~~---v~~ltG~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+.+++ +....|+. ++.++|+.+...+ .+. .++|+|+||+++.....++. .+++++|+||||.+.
T Consensus 139 ~~l~~-l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 139 EKISS-LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHH-HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhh
Confidence 99985 44444544 3457888765422 222 36999999999876655421 189999999999987
Q ss_pred CCC----------CC---hHHHHHHH---------------HHHHHhhcCCCce--EEEeccCCCChHHHHHHhccCCCc
Q 000114 1478 GQG----------GP---VLEVIVSR---------------MRYIASQVENKIR--IVALSTSLANAKDLGEWIGATSHG 1527 (2158)
Q Consensus 1478 ~~~----------g~---~~e~~isr---------------l~~i~~~~~~~~r--iV~lSATl~n~~dl~~wl~~~~~~ 1527 (2158)
+.. |- .++.++.. +..+.+..+...| ++++|||..+...-..++. ....
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r-~ll~ 291 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFR-ELLG 291 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcc-cccc
Confidence 631 11 12222211 1111222233433 6778999433211111111 1101
Q ss_pred eEecCCCCccc-ccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecCh---HHHHHHHHHHHhhcccCCc
Q 000114 1528 LFNFPPGVRPV-PLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSR---KYVRLTAVDLMTYSSMDGD 1603 (2158)
Q Consensus 1528 i~~f~~~~rpv-~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr---~~~~~~a~~L~~~~~~~~~ 1603 (2158)
+......... .+..... .... . ......+... -+.++||||+|+ +.|..++..|..
T Consensus 292 -~~v~~~~~~~r~I~~~~~--~~~~---~-----~~~L~~ll~~--l~~~~IVFv~t~~~~~~a~~l~~~L~~------- 351 (1171)
T TIGR01054 292 -FEVGGGSDTLRNVVDVYV--EDED---L-----KETLLEIVKK--LGTGGIVYVSIDYGKEKAEEIAEFLEN------- 351 (1171)
T ss_pred -eEecCccccccceEEEEE--eccc---H-----HHHHHHHHHH--cCCCEEEEEeccccHHHHHHHHHHHHh-------
Confidence 1111111000 1111111 0000 0 1112223332 246799999999 888888865521
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEe----cCccccccCCCc-c
Q 000114 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTA-H 1678 (2158)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdlp~-~ 1678 (2158)
.+..+..+||+|+. .+++.|++|+++|||| |++++||||+|. +
T Consensus 352 ----------------------------~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V 399 (1171)
T TIGR01054 352 ----------------------------HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERV 399 (1171)
T ss_pred ----------------------------CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccc
Confidence 24568899999973 6889999999999999 489999999998 6
Q ss_pred EEEE
Q 000114 1679 LVVV 1682 (2158)
Q Consensus 1679 ~vVI 1682 (2158)
++||
T Consensus 400 ~~vI 403 (1171)
T TIGR01054 400 RYAV 403 (1171)
T ss_pred cEEE
Confidence 8887
No 195
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.8e-21 Score=228.03 Aligned_cols=444 Identities=16% Similarity=0.196 Sum_probs=276.0
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCc
Q 000114 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (2158)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi 579 (2158)
|+.-|-..+..+.-+++++.||||||.......+.....+. ..+.+..|.|--|.+++.+... .+.+
T Consensus 51 ~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----------~~v~CTQprrvaamsva~RVad---EMDv 117 (699)
T KOG0925|consen 51 QKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----------TGVACTQPRRVAAMSVAQRVAD---EMDV 117 (699)
T ss_pred hHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----------cceeecCchHHHHHHHHHHHHH---Hhcc
Confidence 55667777888888999999999999876666555544432 2589999999999999988876 3455
Q ss_pred EEEEEeCCC-ccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhcc
Q 000114 580 KVRELSGDQ-TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (2158)
Q Consensus 580 ~v~~l~Gd~-~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~ 658 (2158)
..+.-.|-. .+.+-...++-+-+||.+ ++.|.......+..+++||+|||| +|.-....+ .-+++.+....
T Consensus 118 ~lG~EVGysIrfEdC~~~~T~Lky~tDg---mLlrEams~p~l~~y~viiLDeah----ERtlATDiL-mGllk~v~~~r 189 (699)
T KOG0925|consen 118 TLGEEVGYSIRFEDCTSPNTLLKYCTDG---MLLREAMSDPLLGRYGVIILDEAH----ERTLATDIL-MGLLKEVVRNR 189 (699)
T ss_pred ccchhccccccccccCChhHHHHHhcch---HHHHHHhhCcccccccEEEechhh----hhhHHHHHH-HHHHHHHHhhC
Confidence 555544422 222211122333345555 667776666788999999999999 343333333 33333333345
Q ss_pred ccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEE
Q 000114 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738 (2158)
Q Consensus 659 ~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLV 738 (2158)
++.++|.+|||+ ....+..|.+.. ++....+ ..|+.+ .| ...-....+.+....+++.. .....+.++|
T Consensus 190 pdLk~vvmSatl-~a~Kfq~yf~n~---Pll~vpg-~~PvEi--~Y---t~e~erDylEaairtV~qih-~~ee~GDilv 258 (699)
T KOG0925|consen 190 PDLKLVVMSATL-DAEKFQRYFGNA---PLLAVPG-THPVEI--FY---TPEPERDYLEAAIRTVLQIH-MCEEPGDILV 258 (699)
T ss_pred CCceEEEeeccc-chHHHHHHhCCC---CeeecCC-CCceEE--Ee---cCCCChhHHHHHHHHHHHHH-hccCCCCEEE
Confidence 799999999997 456777777643 3444444 334433 22 22222233444333333322 2233789999
Q ss_pred EecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHh-
Q 000114 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG- 817 (2158)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~- 817 (2158)
|..+..+.+..++.+...+-.-. .++.+..|..+| +.++..+++-..
T Consensus 259 FLtgeeeIe~aC~~i~re~~~L~----------------------------~~~g~l~v~PLy----P~~qq~iFep~p~ 306 (699)
T KOG0925|consen 259 FLTGEEEIEDACRKISREVDNLG----------------------------PQVGPLKVVPLY----PAQQQRIFEPAPE 306 (699)
T ss_pred EecCHHHHHHHHHHHHHHHHhhc----------------------------cccCCceEEecC----chhhccccCCCCc
Confidence 99999999999988875431110 011122233334 222222222211
Q ss_pred --CC--CceEEEechhhhhccCCCceEEEEec----ccccCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 818 --DG--HVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 818 --~g--~i~VLVaT~tla~GVdlP~v~vVI~~----~~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
+| ..+|+|+|++++..+.++++.+||+- ..+|+|.-. -..++|..+..||.|||||. ..|+|+.+
T Consensus 307 ~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfrL 383 (699)
T KOG0925|consen 307 KRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRL 383 (699)
T ss_pred ccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEEe
Confidence 12 35899999999999999999999985 467888642 23679999999999999996 57999999
Q ss_pred cCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHH
Q 000114 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLG 965 (2158)
Q Consensus 886 ~~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~ 965 (2158)
++..- |.+-+.. ....+.++.+|.+-+..-.-..+++. -.+. +.+.|.
T Consensus 384 Yte~~---~~~em~~-----~typeilrsNL~s~VL~LKklgI~dl-----------------vhfd-----fmDpPA-- 431 (699)
T KOG0925|consen 384 YTEEA---FEKEMQP-----QTYPEILRSNLSSTVLQLKKLGIDDL-----------------VHFD-----FMDPPA-- 431 (699)
T ss_pred ecHHh---hhhcCCC-----CCcHHHHHHhhHHHHHHHHhcCcccc-----------------cCCc-----CCCCCC--
Confidence 88632 2222211 11223344444443322211112221 1111 111121
Q ss_pred HHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCC
Q 000114 966 ERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVR 1045 (2158)
Q Consensus 966 ~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r 1045 (2158)
.+.+..|++.|.-.+++.-| ..+|++|.+||.|+++|..+++++.+....|+ .++|.|-++-+- .+..+|
T Consensus 432 ---PEtLMrALE~LnYLaaLdDd-----GnLT~lG~imSEFPLdPqLAkmLi~S~efnCs-nEiLsisAMLsv-PncFvR 501 (699)
T KOG0925|consen 432 ---PETLMRALEVLNYLAALDDD-----GNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCS-NEILSISAMLSV-PNCFVR 501 (699)
T ss_pred ---hHHHHHHHHHhhhhhhhCCC-----cccchhhhhhhcCCCChHHHHHHhhcCCCCch-HHHHHHHhcccC-CccccC
Confidence 24567889999888888643 37899999999999999999999998888876 677766555332 455566
Q ss_pred hh-HHHHH
Q 000114 1046 QD-EKMEL 1052 (2158)
Q Consensus 1046 ~~-e~~~l 1052 (2158)
+. +.++.
T Consensus 502 p~~~a~ka 509 (699)
T KOG0925|consen 502 PTSSASKA 509 (699)
T ss_pred CChhHHHH
Confidence 65 44433
No 196
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.88 E-value=7.4e-22 Score=252.09 Aligned_cols=297 Identities=21% Similarity=0.288 Sum_probs=192.9
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
...|+++|.+++.++... ....++++|||+|||.+++..|-... .+++||+|+++|+.|+.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~--------------~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK--------------RSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc--------------CCEEEEECcHHHHHHHHHH
Confidence 347999999999998884 56699999999999999987765541 1399999999999999988
Q ss_pred HHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhc-cCCCccccccceEEeecccccccCChhhHHHHHH
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA 648 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~-~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~ 648 (2158)
+...+.. +..++.+.|+...... ..|.|+|... +.+. .......+..++||+||||++.... ...+..
T Consensus 100 ~~~~~~~-~~~~g~~~~~~~~~~~----~~i~vat~qt---l~~~~~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~ 168 (442)
T COG1061 100 LKKFLLL-NDEIGIYGGGEKELEP----AKVTVATVQT---LARRQLLDEFLGNEFGLIIFDEVHHLPAPS---YRRILE 168 (442)
T ss_pred HHHhcCC-ccccceecCceeccCC----CcEEEEEhHH---HhhhhhhhhhcccccCEEEEEccccCCcHH---HHHHHH
Confidence 7775542 2346666665432221 5799999885 4443 1111233468999999999986532 222222
Q ss_pred HHHHHHhhcccccc-EEEEccccCChH-----HHHHHHhccccCceEEec-----CCcccccceeEEEeeccCC------
Q 000114 649 RTVRQIETTKEHIR-LVGLSATLPNYE-----DVALFLRVNLEKGLFYFD-----NSYRPVPLSQQYIGIQVKK------ 711 (2158)
Q Consensus 649 r~~~~~~~~~~~~r-iv~lSATlpn~~-----dv~~~l~~~~~~~~~~f~-----~~~rpv~l~~~~~~~~~~~------ 711 (2158)
.+ .... ++|||||++..+ ++...++ ..++.+. ..-.-.|.....+......
T Consensus 169 ~~--------~~~~~~LGLTATp~R~D~~~~~~l~~~~g----~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~ 236 (442)
T COG1061 169 LL--------SAAYPRLGLTATPEREDGGRIGDLFDLIG----PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREY 236 (442)
T ss_pred hh--------hcccceeeeccCceeecCCchhHHHHhcC----CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHh
Confidence 11 1223 899999976221 1222221 0011111 0000112211111111000
Q ss_pred --hhHHH-------------------HHhhH----HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccc
Q 000114 712 --PLQRF-------------------QLMND----LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766 (2158)
Q Consensus 712 --~~~~~-------------------~~l~~----~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~ 766 (2158)
...+. ...+. .+...+..+..+.+++|||.+..++..++..+...+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-------- 308 (442)
T COG1061 237 AKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-------- 308 (442)
T ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc--------
Confidence 00000 00000 1111111121356999999999999999988764321
Q ss_pred cccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecc
Q 000114 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT 846 (2158)
Q Consensus 767 ~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~ 846 (2158)
+....+..+..+|..+++.|+.|.+++||++.++..|+|+|++.++|.
T Consensus 309 ------------------------------~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~-- 356 (442)
T COG1061 309 ------------------------------VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII-- 356 (442)
T ss_pred ------------------------------eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE--
Confidence 345589999999999999999999999999999999999999999997
Q ss_pred cccCCCCCccccCCHHHHHHhhcccCCC
Q 000114 847 QIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2158)
Q Consensus 847 ~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2158)
-.|.. |...|+||+||.-|+
T Consensus 357 --~~~t~------S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 357 --LRPTG------SRRLFIQRLGRGLRP 376 (442)
T ss_pred --eCCCC------cHHHHHHHhhhhccC
Confidence 45533 889999999999996
No 197
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.88 E-value=1.5e-22 Score=232.76 Aligned_cols=289 Identities=17% Similarity=0.228 Sum_probs=186.1
Q ss_pred CCCcEEEEEcccHHHHHHHHHHHHhh---cccCCcEEEEEeCCCccCH---hhhccccEEEcchhHHHHHHhccCCCccc
Q 000114 548 HSNYKIVYVAPMKALVAEVVGNLSNR---LQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIITRKSGDRTYT 621 (2158)
Q Consensus 548 ~~~~kil~iaP~kaLa~q~~~~~~~~---~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPekld~l~r~~~~~~~l 621 (2158)
.+.+++|++-|.++|+.|..+.+.++ .....++-..+.|+..... +...+++|+|+||++++....+.. ..+
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~--~~l 361 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL--VTL 361 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc--eee
Confidence 35678999999999999999966553 3222344445556544333 235689999999999855444432 567
Q ss_pred cccceEEeecccccccCChhhHHHHHHHHHHHHhh---ccccccEEEEccccCCh--HHHH-------HHHhcccc----
Q 000114 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET---TKEHIRLVGLSATLPNY--EDVA-------LFLRVNLE---- 685 (2158)
Q Consensus 622 ~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~---~~~~~riv~lSATlpn~--~dv~-------~~l~~~~~---- 685 (2158)
.+++++++||++.++.. .+...+.|+..++.. ....++.+..|||+.-. ..++ .|......
T Consensus 362 t~crFlvlDead~lL~q---gy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vp 438 (725)
T KOG0349|consen 362 THCRFLVLDEADLLLGQ---GYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVP 438 (725)
T ss_pred eeeEEEEecchhhhhhc---ccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccc
Confidence 88999999999988752 233445555444433 33568899999998632 1222 22211100
Q ss_pred CceEE--------ecCCcccc--cc-------eeEE--EeeccCChhHHHHHh-hHHHHHHHHHHhCCCeEEEEecChHH
Q 000114 686 KGLFY--------FDNSYRPV--PL-------SQQY--IGIQVKKPLQRFQLM-NDLCYEKVVAVAGKHQVLIFVHSRKE 745 (2158)
Q Consensus 686 ~~~~~--------f~~~~rpv--~l-------~~~~--~~~~~~~~~~~~~~l-~~~~~~~i~~~~~~~~vLVFv~sr~~ 745 (2158)
..+.. .+.+|... ++ .... ..............+ .+.+...+.++ ...++||||.|+.+
T Consensus 439 etvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~d 517 (725)
T KOG0349|consen 439 ETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQD 517 (725)
T ss_pred hhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEecccc
Confidence 00000 01111100 00 0000 001111111121111 12222233332 35689999999999
Q ss_pred HHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEE
Q 000114 746 TAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825 (2158)
Q Consensus 746 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLV 825 (2158)
|..+-+++.+.+-. .+.+...||...+.+|+.-++.|+.+.++.||
T Consensus 518 cDnLer~~~qkgg~----------------------------------~~scvclhgDrkP~Erk~nle~Fkk~dvkfli 563 (725)
T KOG0349|consen 518 CDNLERMMNQKGGK----------------------------------HYSCVCLHGDRKPDERKANLESFKKFDVKFLI 563 (725)
T ss_pred chHHHHHHHHcCCc----------------------------------cceeEEEecCCChhHHHHHHHhhhhcCeEEEE
Confidence 99999998876531 13456679999999999999999999999999
Q ss_pred echhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 826 aT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
||+++|||+|+..+.++|+-|.|-+.. .|+||+||.||+- +-|.+|.++..
T Consensus 564 ctdvaargldi~g~p~~invtlpd~k~----------nyvhrigrvgrae--rmglaislvat 614 (725)
T KOG0349|consen 564 CTDVAARGLDITGLPFMINVTLPDDKT----------NYVHRIGRVGRAE--RMGLAISLVAT 614 (725)
T ss_pred EehhhhccccccCCceEEEEecCcccc----------hhhhhhhccchhh--hcceeEEEeec
Confidence 999999999999999999988876654 5999999999975 67888877544
No 198
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.88 E-value=6.4e-21 Score=250.32 Aligned_cols=312 Identities=17% Similarity=0.239 Sum_probs=237.4
Q ss_pred CCC-CCCHHHHHHHHHHhc---C--CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1338 GFK-HFNPIQTQVFTVLYN---T--DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1338 gf~-~~~~iQ~q~~~~l~~---~--~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+|+ .-||=|..||+.+.. + .-.-||||--|-|||.+|+-|++..... ++ ++.+++||.-||.|.|+.|+
T Consensus 590 ~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GK--QVAvLVPTTlLA~QHy~tFk 664 (1139)
T COG1197 590 SFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GK--QVAVLVPTTLLAQQHYETFK 664 (1139)
T ss_pred cCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CC--eEEEEcccHHhHHHHHHHHH
Confidence 444 579999999999875 2 2257999999999999999999988766 44 89999999999999999999
Q ss_pred HHhcCCCCcEEEEEcCCcchh-----hhcccCC--cEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChH
Q 000114 1412 IKFGQGLGMRVVELTGETAMD-----LKLLEKG--QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~~~~-----~~~l~~~--~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~ 1484 (2158)
++|... +++|..+..-.+.. .+.+..+ ||||+|-. -......+++++|+||||-|+.|-..
T Consensus 665 eRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr-------LL~kdv~FkdLGLlIIDEEqRFGVk~---- 732 (1139)
T COG1197 665 ERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR-------LLSKDVKFKDLGLLIIDEEQRFGVKH---- 732 (1139)
T ss_pred HHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH-------hhCCCcEEecCCeEEEechhhcCccH----
Confidence 999876 88998887654433 3344444 99999933 22234567899999999999987321
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHH
Q 000114 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~ 1564 (2158)
-.+++.+ ..++-++.||||+-+..--..-.|...-.++.-+|..| .|+..++..++.. -..
T Consensus 733 ---KEkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R-~pV~T~V~~~d~~-----------~ir 793 (1139)
T COG1197 733 ---KEKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR-LPVKTFVSEYDDL-----------LIR 793 (1139)
T ss_pred ---HHHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC-cceEEEEecCChH-----------HHH
Confidence 2334444 45899999999975432223345555555665555544 5667776655422 234
Q ss_pred HHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCC
Q 000114 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (2158)
Q Consensus 1565 ~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~ 1644 (2158)
.+|...+..++++...+|..+....++..|.... ....|++-||.|+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LV---------------------------------PEarI~vaHGQM~ 840 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELV---------------------------------PEARIAVAHGQMR 840 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhC---------------------------------CceEEEEeecCCC
Confidence 5667777899999999999999999887774422 1235999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEE
Q 000114 1645 KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2158)
Q Consensus 1645 ~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil 1724 (2158)
..+-+.++..|-+|+.+|||||.+.+.|||+|+.+.+|. ++---+-++++.|.-||+||. +..|.|+++
T Consensus 841 e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII---------e~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl 909 (1139)
T COG1197 841 ERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII---------ERADKFGLAQLYQLRGRVGRS--NKQAYAYFL 909 (1139)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE---------eccccccHHHHHHhccccCCc--cceEEEEEe
Confidence 999999999999999999999999999999996655551 222335689999999999997 489999999
Q ss_pred ecCCh
Q 000114 1725 CHAPR 1729 (2158)
Q Consensus 1725 ~~~~~ 1729 (2158)
+.+.+
T Consensus 910 ~p~~k 914 (1139)
T COG1197 910 YPPQK 914 (1139)
T ss_pred ecCcc
Confidence 98754
No 199
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.88 E-value=6.6e-21 Score=216.15 Aligned_cols=312 Identities=22% Similarity=0.275 Sum_probs=209.8
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+|++.|+.+-..++ ...+.+||.|-||||||....-.|-+.+.++ .++.+.+|+...|-|++.+++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-----------~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-----------GRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-----------CeEEEecCcccchHHHHHHHH
Confidence 79999999877665 4566799999999999998776766666543 479999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~ 651 (2158)
..|. ++.+..++|+....- .++++|+|... +.|. -+.++++||||+|-..-.-.+.+...+...
T Consensus 166 ~aF~--~~~I~~Lyg~S~~~f----r~plvVaTtHQ---LlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~a- 229 (441)
T COG4098 166 QAFS--NCDIDLLYGDSDSYF----RAPLVVATTHQ---LLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKA- 229 (441)
T ss_pred Hhhc--cCCeeeEecCCchhc----cccEEEEehHH---HHHH------HhhccEEEEeccccccccCCHHHHHHHHHh-
Confidence 9876 467888999875433 37889988775 3332 235799999999976544455566555543
Q ss_pred HHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCC--cccccceeEEEeeccCChhHHHHHhhHHHHHHHHH
Q 000114 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS--YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA 729 (2158)
Q Consensus 652 ~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~--~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 729 (2158)
....--+|.||||.++ .+.+-+... .......... -+|.|+...+....-.+...+ +.+...++..+..
T Consensus 230 -----rk~~g~~IylTATp~k--~l~r~~~~g-~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r-~kl~~kl~~~lek 300 (441)
T COG4098 230 -----RKKEGATIYLTATPTK--KLERKILKG-NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQR-NKLPLKLKRWLEK 300 (441)
T ss_pred -----hcccCceEEEecCChH--HHHHHhhhC-CeeEeecchhhcCCCCCCCceEEeccHHHHhhh-ccCCHHHHHHHHH
Confidence 2344567999999763 222222111 0111112222 234444333222111111111 1122223333443
Q ss_pred HhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 730 VAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 730 ~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
+.. +.|++||+++....+++|..|...... ..++..|+. ..+
T Consensus 301 q~~~~~P~liF~p~I~~~eq~a~~lk~~~~~-----------------------------------~~i~~Vhs~--d~~ 343 (441)
T COG4098 301 QRKTGRPVLIFFPEIETMEQVAAALKKKLPK-----------------------------------ETIASVHSE--DQH 343 (441)
T ss_pred HHhcCCcEEEEecchHHHHHHHHHHHhhCCc-----------------------------------cceeeeecc--Ccc
Confidence 333 679999999999999999988654211 124455663 467
Q ss_pred HHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcC
Q 000114 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2158)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2158)
|.+..+.|++|++++||+|.+|+|||.+|+++|.+-+. +. .-++.+.++|++||+||.---..|..+.+-.
T Consensus 344 R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlga-----eh---~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 344 RKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGA-----EH---RVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHHHHHHHcCceEEEEEeehhhcccccccceEEEecC-----Cc---ccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 88899999999999999999999999999999988532 21 2257789999999999975445576655533
No 200
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.88 E-value=4.6e-21 Score=249.79 Aligned_cols=431 Identities=16% Similarity=0.202 Sum_probs=281.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000114 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (2158)
Q Consensus 1344 ~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~ 1423 (2158)
+.+.+.+.++ +.+..++|+|.||||||+-....|+....... +..++|+..|+|--|..+++++....+...|-.|+
T Consensus 176 ~~r~~Il~~i-~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 176 KMRDTILDAI-EENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred HHHHHHHHHH-HhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 4455555554 56888999999999999998888888776643 44589999999999999999988776665665554
Q ss_pred EEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCce
Q 000114 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2158)
Q Consensus 1424 ~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~r 1503 (2158)
.-.+-.+ +.-..+.+.+||.+.+. |+......+..+..+|+||+|.-.-. ... ++--++.+... .++.+
T Consensus 253 Yqvrl~~---~~s~~t~L~fcTtGvLL---r~L~~~~~l~~vthiivDEVHER~i~-~Df---lLi~lk~lL~~-~p~Lk 321 (924)
T KOG0920|consen 253 YQVRLES---KRSRETRLLFCTTGVLL---RRLQSDPTLSGVTHIIVDEVHERSIN-TDF---LLILLKDLLPR-NPDLK 321 (924)
T ss_pred EEEeeec---ccCCceeEEEecHHHHH---HHhccCcccccCceeeeeeEEEccCC-ccc---HHHHHHHHhhh-CCCce
Confidence 4333211 12234789999999754 44444678999999999999954321 122 33333444333 47999
Q ss_pred EEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEe-------cccccchHHH----------------HHhcC
Q 000114 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ-------GVDITNFEAR----------------MQAMT 1560 (2158)
Q Consensus 1504 iV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~-------~~~~~~~~~~----------------~~~~~ 1560 (2158)
+|+||||+ |++.+..|+|..+ ++.... |..|+..++. .+........ ...++
T Consensus 322 vILMSAT~-dae~fs~YF~~~p--vi~i~g--rtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 396 (924)
T KOG0920|consen 322 VILMSATL-DAELFSDYFGGCP--VITIPG--RTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEID 396 (924)
T ss_pred EEEeeeec-chHHHHHHhCCCc--eEeecC--CCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccccc
Confidence 99999998 7899999998543 222221 1111111110 0000000000 00122
Q ss_pred hHHHHHHHHhH---hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1561 KPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1561 k~~~~~i~~~~---~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
......+..++ ...+.+|||.|+...+..+...|...+...+. ...-|.
T Consensus 397 ~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~----------------------------~~~~il 448 (924)
T KOG0920|consen 397 YDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS----------------------------LKFAIL 448 (924)
T ss_pred HHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc----------------------------cceEEE
Confidence 23333333333 33567999999999998888777432221110 123378
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEe----cceeecCCCCc----CcCCCHHHHHHhhcc
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM----GTQYYDGQENA----HTDYPVTDLLQMMGH 1709 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~----gt~~yd~~~~~----~~~~s~~~~lQr~GR 1709 (2158)
.+|+.|+..+++.|+.....|..+|++||+.++.+|.+|++..||- .-..||+..+. ....|.....||.||
T Consensus 449 plHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GR 528 (924)
T KOG0920|consen 449 PLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGR 528 (924)
T ss_pred eccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccc
Confidence 9999999999999999999999999999999999999999999993 23568887544 234578889999999
Q ss_pred CCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCc-CCCHHHHHHHHHHhhhhhhhccCCC
Q 000114 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGV-IENKQDAVDYLTWTFMYRRLTQNPN 1788 (2158)
Q Consensus 1710 aGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~-i~~~qd~id~l~~t~~yrRl~~nP~ 1788 (2158)
|||. ..|.||-++... .|.++... .++-..+...|. |++... +....+..+ |.-++...|+
T Consensus 529 AGRv---~~G~cy~L~~~~---~~~~~~~~-~q~PEilR~pL~-----~l~L~iK~l~~~~~~~------fLskaldpP~ 590 (924)
T KOG0920|consen 529 AGRV---RPGICYHLYTRS---RYEKLMLA-YQLPEILRTPLE-----ELCLHIKVLEQGSIKA------FLSKALDPPP 590 (924)
T ss_pred ccCc---cCCeeEEeechh---hhhhcccc-cCChHHHhChHH-----HhhheeeeccCCCHHH------HHHHhcCCCC
Confidence 9995 699999998874 34444331 111122211121 111110 111111112 2334556665
Q ss_pred CccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCC
Q 000114 1789 YYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKT 1859 (2158)
Q Consensus 1789 ~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~ 1859 (2158)
- +.|..++..|.+.|.+..++ ..|.+|+.+|.+++++.-.+++..+.--++
T Consensus 591 ~----------------~~v~~a~~~L~~igaL~~~e----~LT~LG~~la~lPvd~~igK~ll~g~if~c 641 (924)
T KOG0920|consen 591 A----------------DAVDLAIERLKQIGALDESE----ELTPLGLHLASLPVDVRIGKLLLFGAIFGC 641 (924)
T ss_pred h----------------HHHHHHHHHHHHhccccCcc----cchHHHHHHHhCCCccccchhheehhhccc
Confidence 3 67899999999999996543 688899999999999999888775443333
No 201
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.88 E-value=7.6e-21 Score=242.81 Aligned_cols=299 Identities=16% Similarity=0.171 Sum_probs=194.7
Q ss_pred CCCCCHHHHHHHHHHhcC---CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1339 FKHFNPIQTQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~---~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
...++++|.+++.++.+. ++..++++|||+|||+++..++- .+. . +++||+|+++|+.|+.+.+.+.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~~-----~--~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-ELK-----R--STLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-Hhc-----C--CEEEEECcHHHHHHHHHHHHHhcC
Confidence 346999999999999884 66699999999999999966554 222 2 599999999999999988875544
Q ss_pred CCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHH
Q 000114 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA 1495 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~ 1495 (2158)
. ...++.+.|+..... ...|.|+|-..+...- .........+++||+||||++.... +..+...+
T Consensus 106 ~--~~~~g~~~~~~~~~~----~~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~~~---- 170 (442)
T COG1061 106 L--NDEIGIYGGGEKELE----PAKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS---YRRILELL---- 170 (442)
T ss_pred C--ccccceecCceeccC----CCcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCcHH---HHHHHHhh----
Confidence 2 234666666544321 1579999977654321 0111223369999999999997543 22222221
Q ss_pred hhcCCCce-EEEeccCCCChH-----HHHHHhccCCCceEecCC-------CCcccccEEEEecccccc------hH---
Q 000114 1496 SQVENKIR-IVALSTSLANAK-----DLGEWIGATSHGLFNFPP-------GVRPVPLEIHIQGVDITN------FE--- 1553 (2158)
Q Consensus 1496 ~~~~~~~r-iV~lSATl~n~~-----dl~~wl~~~~~~i~~f~~-------~~rpv~l~~~i~~~~~~~------~~--- 1553 (2158)
. ... ++|||||++..+ ++...+| ..++.+.. ...|..+........... ..
T Consensus 171 ---~-~~~~~LGLTATp~R~D~~~~~~l~~~~g---~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~ 243 (442)
T COG1061 171 ---S-AAYPRLGLTATPEREDGGRIGDLFDLIG---PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARF 243 (442)
T ss_pred ---h-cccceeeeccCceeecCCchhHHHHhcC---CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhh
Confidence 1 233 899999976432 3444444 12222221 112211111111011000 00
Q ss_pred ----------------HHHHhcChHHHHHHHHhHh---cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcc
Q 000114 1554 ----------------ARMQAMTKPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE 1614 (2158)
Q Consensus 1554 ----------------~~~~~~~k~~~~~i~~~~~---~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~ 1614 (2158)
.............+...+. .+.+++|||.+..++..++..+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~------------------ 305 (442)
T COG1061 244 RELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA------------------ 305 (442)
T ss_pred hhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC------------------
Confidence 0111111222222222222 467999999999999999866621
Q ss_pred cchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCc
Q 000114 1615 EVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENA 1694 (2158)
Q Consensus 1615 ~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~ 1694 (2158)
..++..+.+..+..+|..+++.|+.|.+++||++.++..|+|+|++.++|+-.+
T Consensus 306 ------------------~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~-------- 359 (442)
T COG1061 306 ------------------PGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP-------- 359 (442)
T ss_pred ------------------CCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCC--------
Confidence 111678899999999999999999999999999999999999998888874322
Q ss_pred CcCCCHHHHHHhhccCCCC
Q 000114 1695 HTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1695 ~~~~s~~~~lQr~GRaGR~ 1713 (2158)
.-|...|+||+||.-|+
T Consensus 360 --t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 360 --TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred --CCcHHHHHHHhhhhccC
Confidence 22789999999999995
No 202
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.87 E-value=1.6e-20 Score=246.57 Aligned_cols=316 Identities=19% Similarity=0.255 Sum_probs=226.9
Q ss_pred hHhhc-CCCC-CCCHHHHHHHHHHHcC---CC--cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 486 AQPAF-KGMT-QLNRVQSRVYKSALSS---AD--NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 486 ~~~~f-~g~~-~l~~iQ~~~i~~~l~~---~~--nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.+..| .+|. .-|+=|..||..+... .. +=||||.-|-|||.+|+-+++..+..+ .+|.++||
T Consensus 583 ~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-----------KQVAvLVP 651 (1139)
T COG1197 583 WQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-----------KQVAVLVP 651 (1139)
T ss_pred HHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-----------CeEEEEcc
Confidence 34444 3342 5799999999988653 22 359999999999999999999988754 48999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeec
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDE 631 (2158)
|.-||+|-+++|+++|+.++++|..+..-.+...+. .+..||+|+|.- +..+. ..+++++|+||||
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~kd---v~FkdLGLlIIDE 724 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSKD---VKFKDLGLLIIDE 724 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCCC---cEEecCCeEEEec
Confidence 999999999999999999999999988755443322 357899999975 23222 4678899999999
Q ss_pred ccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHH-HHHhccccCceEEecCCcccccceeEEEeeccC
Q 000114 632 IHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVA-LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK 710 (2158)
Q Consensus 632 aH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~-~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~ 710 (2158)
-|+.+=.. .. .+.....++-++-||||.-+ ..+. ...+.. .-.+. -.+..+..|+...+..+
T Consensus 725 EqRFGVk~----KE-------kLK~Lr~~VDvLTLSATPIP-RTL~Msm~GiR-dlSvI-~TPP~~R~pV~T~V~~~--- 787 (1139)
T COG1197 725 EQRFGVKH----KE-------KLKELRANVDVLTLSATPIP-RTLNMSLSGIR-DLSVI-ATPPEDRLPVKTFVSEY--- 787 (1139)
T ss_pred hhhcCccH----HH-------HHHHHhccCcEEEeeCCCCc-chHHHHHhcch-hhhhc-cCCCCCCcceEEEEecC---
Confidence 99864221 11 12234568999999999432 2221 122211 00011 11111222333222211
Q ss_pred ChhHHHHHhhHHHHHHH-HHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchh
Q 000114 711 KPLQRFQLMNDLCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2158)
Q Consensus 711 ~~~~~~~~l~~~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (2158)
+. ..+.+.+ .+...++|+-..+|..+..++.+..|++.-..
T Consensus 788 d~--------~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPE------------------------------ 829 (1139)
T COG1197 788 DD--------LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPE------------------------------ 829 (1139)
T ss_pred Ch--------HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCc------------------------------
Confidence 11 1122222 34556899998899999999999998875322
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhc
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2158)
..|++-||.|+..+-+.++..|-+|+.+|||||.+.+.|||+|+.+-+|- .+.. -+..+++.|.-|
T Consensus 830 -----arI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII----e~AD-----~fGLsQLyQLRG 895 (1139)
T COG1197 830 -----ARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII----ERAD-----KFGLAQLYQLRG 895 (1139)
T ss_pred -----eEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE----eccc-----cccHHHHHHhcc
Confidence 24788899999999999999999999999999999999999999987664 3333 368999999999
Q ss_pred ccCCCCCCCccEEEEEcCCCc
Q 000114 870 RAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~ 890 (2158)
|.||.. ..|.||+++.+.+
T Consensus 896 RVGRS~--~~AYAYfl~p~~k 914 (1139)
T COG1197 896 RVGRSN--KQAYAYFLYPPQK 914 (1139)
T ss_pred ccCCcc--ceEEEEEeecCcc
Confidence 999965 7899999998754
No 203
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.6e-20 Score=243.54 Aligned_cols=372 Identities=22% Similarity=0.238 Sum_probs=251.3
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
...+|+-|+.++..+..+ ....|+.+.||||||.+|+-.|-+.+.+++ .+|+++|-.+|..|+..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-----------qvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-----------QVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-----------EEEEEeccccchHHHHHH
Confidence 347899999999998766 467899999999999999999999888653 799999999999999999
Q ss_pred HHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc--cCCh
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH--DNRG 640 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~--d~rg 640 (2158)
|+.+|+ .+|.+++++.+...+. .++..|+|+| ++.-+..+.++++|||||-|--. ...+
T Consensus 265 f~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~ 332 (730)
T COG1198 265 FKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPFKNLGLIIVDEEHDSSYKQEDG 332 (730)
T ss_pred HHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCchhhccEEEEeccccccccCCcC
Confidence 999875 6899999988766542 3578999999 44445678999999999999542 2344
Q ss_pred hhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcccc-CceEEecCCcccc-cceeEEEeeccCChhHHHHH
Q 000114 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE-KGLFYFDNSYRPV-PLSQQYIGIQVKKPLQRFQL 718 (2158)
Q Consensus 641 ~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~-~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~~~~ 718 (2158)
+.+. +|-....+....++++|+-||| |. +..|.++... .....+...+... +....++.+........ ..
T Consensus 333 prYh---ARdvA~~Ra~~~~~pvvLgSAT-PS---LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~ 404 (730)
T COG1198 333 PRYH---ARDVAVLRAKKENAPVVLGSAT-PS---LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RS 404 (730)
T ss_pred CCcC---HHHHHHHHHHHhCCCEEEecCC-CC---HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccC-cc
Confidence 4443 2333334445678999999999 44 4445444211 1233344433322 44445554443322111 11
Q ss_pred hhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHh----------hhhccC--
Q 000114 719 MNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS----------HTDMVK-- 785 (2158)
Q Consensus 719 l~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~-- 785 (2158)
+...+++.+.+... +.|+|+|+|.|.-+..+...=|..-..+......+.-+.......+. .+..|.
T Consensus 405 lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 405 LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 55666777766655 78999999999877655444333322222221111111111111111 111221
Q ss_pred ------------cchhhhhcc-CCeEEecCCCCHHH--HHHHHHHHhCCCceEEEechhhhhccCCCceEE--EEecccc
Q 000114 786 ------------SNDLKDLLP-YGFAIHHAGMTRGD--RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV--IIKGTQI 848 (2158)
Q Consensus 786 ------------~~~l~~ll~-~gv~~hHagl~~~~--R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v--VI~~~~~ 848 (2158)
.+.|+.++| ..|...-++.+... -+..++.|.+|+++|||.|..++.|.|+|+++. |++.+..
T Consensus 485 ~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~ 564 (730)
T COG1198 485 HLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTG 564 (730)
T ss_pred eeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhh
Confidence 123444443 44555555554432 356788999999999999999999999999987 6666666
Q ss_pred cCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 849 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 849 yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
...+..|..|-..+.+.|-+|||||.+ ..|.++|.|..++...+..+
T Consensus 565 L~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 565 LGSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred hcCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCCcHHHHHH
Confidence 666677888889999999999999965 67999999998875554433
No 204
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.7e-20 Score=230.20 Aligned_cols=445 Identities=19% Similarity=0.181 Sum_probs=275.7
Q ss_pred HHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh---cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE
Q 000114 1348 QVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA---SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE 1424 (2158)
Q Consensus 1348 q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~---~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ 1424 (2158)
++..++.+ +.-|||||.||||||...-..+...--.. ...| .+=|..|+|.-|..++++....++. +|..|+.
T Consensus 263 ~IMEaIn~-n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~g--mIGITqPRRVAaiamAkRVa~EL~~-~~~eVsY 338 (1172)
T KOG0926|consen 263 RIMEAINE-NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPG--MIGITQPRRVAAIAMAKRVAFELGV-LGSEVSY 338 (1172)
T ss_pred HHHHHhhc-CCeEEEecCCCCCccccchHHHHHcccCCccCCCCC--eeeecCchHHHHHHHHHHHHHHhcc-CccceeE
Confidence 45555544 66799999999999976433333321111 1123 5668999999999999998887776 3555544
Q ss_pred EcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC----
Q 000114 1425 LTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN---- 1500 (2158)
Q Consensus 1425 ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~---- 1500 (2158)
... .+...-..+.|.++|.+. ++|.......+..++.||+||||.-. .....+--.++|+-.+...+..
T Consensus 339 qIR---fd~ti~e~T~IkFMTDGV---LLrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 339 QIR---FDGTIGEDTSIKFMTDGV---LLREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred EEE---eccccCCCceeEEecchH---HHHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 321 111222456899999997 45555567788999999999999432 1233444467777666655444
Q ss_pred --CceEEEeccCCCChHHHHHHhccCCCceEecCC-----CCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhc
Q 000114 1501 --KIRIVALSTSLANAKDLGEWIGATSHGLFNFPP-----GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKN 1573 (2158)
Q Consensus 1501 --~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~-----~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~ 1573 (2158)
+.++|.|||||. ..|+.+ . ..+|...| ..|..|+.+|+..-...+|..... .....|.+. .+
T Consensus 412 ~kpLKLIIMSATLR-VsDFte---n--k~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAf----rKtc~IH~k-LP 480 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLR-VSDFTE---N--KRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAF----RKTCKIHKK-LP 480 (1172)
T ss_pred cCceeEEEEeeeEE-eccccc---C--ceecCCCCceeeeecccCceEEEeccCCCchHHHHHH----HHHHHHhhc-CC
Confidence 899999999983 333321 1 12333332 347778888887665555433211 112233344 56
Q ss_pred CCCEEEEecChHHHHHHHHHHHhhcccCCc--------------cc-cc-------ccCCCcccchhhHhh---------
Q 000114 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGD--------------QK-SA-------FLLWPAEEVEPFIDN--------- 1622 (2158)
Q Consensus 1574 ~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~--------------~~-~~-------~l~~~~~~l~~~~~~--------- 1622 (2158)
.+.+|||+.....+..++..|.......-. .. .. ......+.+..-.+.
T Consensus 481 ~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~ 560 (1172)
T KOG0926|consen 481 PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSG 560 (1172)
T ss_pred CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhccc
Confidence 778999999999999999999776331100 00 00 000000000000000
Q ss_pred -------------------------hhHHHHHHHhc--------ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCcc
Q 000114 1623 -------------------------IQEEMLKATLR--------HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSM 1669 (2158)
Q Consensus 1623 -------------------------i~d~~L~~~l~--------~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~l 1669 (2158)
..+..+....+ .-|..+++-|+.+++.+|++.-..|..-++|||+++
T Consensus 561 ~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVA 640 (1172)
T KOG0926|consen 561 FASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVA 640 (1172)
T ss_pred chhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccch
Confidence 00111111111 127888999999999999999999999999999999
Q ss_pred ccccCCCccEEEEec----ceeecCCCCc---C-cCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH-HHHHHhh--
Q 000114 1670 CWGVPLTAHLVVVMG----TQYYDGQENA---H-TDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE-YYKKFLY-- 1738 (2158)
Q Consensus 1670 a~Gvdlp~~~vVI~g----t~~yd~~~~~---~-~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~-~~~k~l~-- 1738 (2158)
+.++.+|++..||-+ +..||...+. . ...|..+--||+|||||.| .|.||-++.+.-.+ .|..|-.
T Consensus 641 ETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~~~Fe~fS~PE 717 (1172)
T KOG0926|consen 641 ETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFSNDFEEFSLPE 717 (1172)
T ss_pred hcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhhcchhhhccHH
Confidence 999999999999943 3457665432 1 1356777889999999975 99999998874322 1221110
Q ss_pred -CCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHh
Q 000114 1739 -DAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1817 (2158)
Q Consensus 1739 -~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~ 1817 (2158)
-..|+|+-+ -...+..|.+.-. |.|- ..|. ...++.+...|..
T Consensus 718 Ilk~Pve~lv---------LqMKsMnI~kVvn--------FPFP---tpPd----------------~~~L~~Aer~L~~ 761 (1172)
T KOG0926|consen 718 ILKKPVESLV---------LQMKSMNIDKVVN--------FPFP---TPPD----------------RSALEKAERRLKA 761 (1172)
T ss_pred HhhCcHHHHH---------HHHHhcCccceec--------CCCC---CCcc----------------HHHHHHHHHHHHH
Confidence 011333322 1122222222110 1110 1111 1467899999999
Q ss_pred CCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCC
Q 000114 1818 SKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTP 1857 (2158)
Q Consensus 1818 ~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~ 1857 (2158)
.|++..+ -..|.+|..+|.|+++|+-.+++..+...
T Consensus 762 LgALd~~----g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~ 797 (1172)
T KOG0926|consen 762 LGALDSN----GGLTKLGKAMSLFPLSPRFSKMLATSDQH 797 (1172)
T ss_pred hcccccc----CCcccccchhcccccChhHHHHHHHHHhh
Confidence 9999542 26788899999999999999998865443
No 205
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.86 E-value=1e-21 Score=225.95 Aligned_cols=291 Identities=18% Similarity=0.251 Sum_probs=187.0
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHhcCCC---CcEEEEEcCCcch-h-hhcc-cCCcEEEeCHHHHHHHHhhhhccccccc
Q 000114 1391 MRAVYIAPLEALAKERYRDWEIKFGQGL---GMRVVELTGETAM-D-LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQ 1464 (2158)
Q Consensus 1391 ~~~v~IaP~raLa~q~~~~~~~~f~~~~---g~~v~~ltG~~~~-~-~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~ 1464 (2158)
|.+|++-|.++|+.|.++.+. +|.... .++...+.|+... + .+.+ ...+|+|+||++++.+... ....+.+
T Consensus 287 p~avivepsrelaEqt~N~i~-~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--g~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIE-EFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--GLVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHH-HHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--cceeeee
Confidence 589999999999999999776 555331 2343344554332 2 2233 4459999999999988765 4557889
Q ss_pred eeEEEecccccccCCCCChHHHHHHHHH----HHHhhcCCCceEEEeccCCCCh--HHHH-------HHhccCCCc----
Q 000114 1465 VSLFIIDELHLIGGQGGPVLEVIVSRMR----YIASQVENKIRIVALSTSLANA--KDLG-------EWIGATSHG---- 1527 (2158)
Q Consensus 1465 v~llIiDEaH~l~~~~g~~~e~~isrl~----~i~~~~~~~~riV~lSATl~n~--~dl~-------~wl~~~~~~---- 1527 (2158)
++++|+||++.++... +...+.|+. .+.+. ....+.+.+|||+.-. ..++ .|.......
T Consensus 364 crFlvlDead~lL~qg---y~d~I~r~h~qip~~tsd-g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe 439 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQG---YDDKIYRFHGQIPHMTSD-GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE 439 (725)
T ss_pred eEEEEecchhhhhhcc---cHHHHHHHhccchhhhcC-CcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch
Confidence 9999999999887543 344555543 33222 3568899999998542 2222 344332211
Q ss_pred -eEec----CCCCcc--cccEEEEe------------cccccchHHHHHhcCh--HHHHHHHHhHhcCCCEEEEecChHH
Q 000114 1528 -LFNF----PPGVRP--VPLEIHIQ------------GVDITNFEARMQAMTK--PTFTAIVQHAKNEKPALVFVPSRKY 1586 (2158)
Q Consensus 1528 -i~~f----~~~~rp--v~l~~~i~------------~~~~~~~~~~~~~~~k--~~~~~i~~~~~~~~~~IVFv~sr~~ 1586 (2158)
+..+ .|.... ..+..++. +...+...+....+.+ ....++.+ ....++||||.|+..
T Consensus 440 tvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~--h~mdkaiifcrtk~d 517 (725)
T KOG0349|consen 440 TVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRR--HAMDKAIIFCRTKQD 517 (725)
T ss_pred hhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhh--hccCceEEEEecccc
Confidence 1111 010000 00000000 0000111111111111 11222323 356789999999999
Q ss_pred HHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEec
Q 000114 1587 VRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666 (2158)
Q Consensus 1587 ~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT 1666 (2158)
|..+-+.+.+.-. -.+.+..+|++..+.+|+.-++.|+.+.++.||||
T Consensus 518 cDnLer~~~qkgg--------------------------------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflict 565 (725)
T KOG0349|consen 518 CDNLERMMNQKGG--------------------------------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICT 565 (725)
T ss_pred chHHHHHHHHcCC--------------------------------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEe
Confidence 9877765543211 23458899999999999999999999999999999
Q ss_pred CccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC-hHHHHH
Q 000114 1667 SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYK 1734 (2158)
Q Consensus 1667 ~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~-~~~~~~ 1734 (2158)
++++||+|+..+-++| |...|-..+.|+||+||.||+ .+.|.++.++... ++-.|.
T Consensus 566 dvaargldi~g~p~~i----------nvtlpd~k~nyvhrigrvgra--ermglaislvat~~ekvwyh 622 (725)
T KOG0349|consen 566 DVAARGLDITGLPFMI----------NVTLPDDKTNYVHRIGRVGRA--ERMGLAISLVATVPEKVWYH 622 (725)
T ss_pred hhhhccccccCCceEE----------EEecCcccchhhhhhhccchh--hhcceeEEEeeccchheeeh
Confidence 9999999999999999 555666789999999999997 4788888776554 333343
No 206
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.85 E-value=1.5e-19 Score=248.74 Aligned_cols=335 Identities=18% Similarity=0.216 Sum_probs=192.5
Q ss_pred CCCCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
..++++|.+|+..+. .+.++.|+++|||||||.+++..+.+.+... ...+|||++|+++|+.|..+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~---------~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK---------RFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC---------ccCeEEEEecHHHHHHHHHHH
Confidence 358999999998765 3456799999999999998765554444332 124899999999999999999
Q ss_pred HHhhcccCCcEEEEEeCCCccCHh-hhccccEEEcchhHHH-HHHhcc--CCCccccccceEEeeccccccc-CC----h
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKWD-IITRKS--GDRTYTQLVKLLIIDEIHLLHD-NR----G 640 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekld-~l~r~~--~~~~~l~~v~lIIiDEaH~l~d-~r----g 640 (2158)
|.......+..+..+.+-..+... .....+|+|||..++. .+.... .....+..+++|||||||+-.. .+ |
T Consensus 483 F~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred HHhcccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 987532222122112111111111 1235789999999862 222111 1113467789999999998421 00 0
Q ss_pred ----hhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec-------C---Ccc-cccceeEE-
Q 000114 641 ----PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-------N---SYR-PVPLSQQY- 704 (2158)
Q Consensus 641 ----~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~-------~---~~r-pv~l~~~~- 704 (2158)
.............+.. . +...||||||+. . .-..+++. +++.++ + .+. |......+
T Consensus 563 ~~~~~~~~~~~~~yr~iL~y-F-dA~~IGLTATP~-r-~t~~~FG~----pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~ 634 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDY-F-DAVKIGLTATPA-L-HTTEIFGE----PVYTYSYREAVIDGYLIDHEPPIRIETRLS 634 (1123)
T ss_pred hhccchhhhHHHHHHHHHhh-c-CccEEEEecCCc-c-chhHHhCC----eeEEeeHHHHHhcCCcccCcCCEEEEEEec
Confidence 0001111222222221 1 356799999953 2 22233331 111110 0 000 11111000
Q ss_pred -EeeccCC------------h------hH----HHHH---------hhHHHHHHHHHHh---CCCeEEEEecChHHHHHH
Q 000114 705 -IGIQVKK------------P------LQ----RFQL---------MNDLCYEKVVAVA---GKHQVLIFVHSRKETAKT 749 (2158)
Q Consensus 705 -~~~~~~~------------~------~~----~~~~---------l~~~~~~~i~~~~---~~~~vLVFv~sr~~~~~~ 749 (2158)
.|+.... . .. .... .+..+...+.+.. ..+++||||.++.+|..+
T Consensus 635 ~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i 714 (1123)
T PRK11448 635 QEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMV 714 (1123)
T ss_pred cccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHH
Confidence 0000000 0 00 0001 1112222233222 247999999999999999
Q ss_pred HHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCc-eEEEech
Q 000114 750 ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV-QVLVSTA 828 (2158)
Q Consensus 750 a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i-~VLVaT~ 828 (2158)
+..|.+....... ..-...+...||+++ ++..+++.|+++.. +|+|+++
T Consensus 715 ~~~L~~~f~~~~~----------------------------~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvd 764 (1123)
T PRK11448 715 VRLLKEAFKKKYG----------------------------QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVD 764 (1123)
T ss_pred HHHHHHHHHhhcC----------------------------CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEec
Confidence 9988764311000 000112344577765 56789999999987 7999999
Q ss_pred hhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC-CccEEEEE
Q 000114 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIII 885 (2158)
Q Consensus 829 tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil 885 (2158)
++.+|+|+|.+.+||. +.+.+ |...|+||+||+.|.-.+ .+-.++|+
T Consensus 765 mL~TG~DvP~v~~vVf----~rpvk------S~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 765 LLTTGIDVPSICNLVF----LRRVR------SRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred ccccCCCcccccEEEE----ecCCC------CHHHHHHHHhhhccCCccCCCceEEEE
Confidence 9999999999999997 56655 888999999999996432 23344444
No 207
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.8e-19 Score=233.71 Aligned_cols=396 Identities=18% Similarity=0.221 Sum_probs=261.0
Q ss_pred CCCCCHHHHHHHHHHhcC---CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1339 FKHFNPIQTQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~---~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
...+|+-|..++..+..+ ....++.+.||||||.+|+-+|-..+.+ ++ .+++++|-.+|..|+.++++.+|+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---Gk--qvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GK--QVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CC--EEEEEeccccchHHHHHHHHHHhC
Confidence 357899999999998765 4679999999999999998888888776 45 899999999999999999999996
Q ss_pred CCCCcEEEEEcCCcchhhh-------cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc--CCCCChH--
Q 000114 1416 QGLGMRVVELTGETAMDLK-------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG--GQGGPVL-- 1484 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~-------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~--~~~g~~~-- 1484 (2158)
.+|.+++++.+...+ ...+++|||+| +......++++++|||||-|--. ...++.|
T Consensus 271 ----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 271 ----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred ----CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCchhhccEEEEeccccccccCCcCCCcCH
Confidence 478889988776522 12355999999 43445678999999999999543 2333333
Q ss_pred -HHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCC--ceEecCCCC-cccccEEEEecccccchHHHHHhcC
Q 000114 1485 -EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH--GLFNFPPGV-RPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1485 -e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~--~i~~f~~~~-rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
+..+-|-+ ..++.+|+-|||++ +..|..+... ..+.+.... +..+..+.+........... ..+.
T Consensus 338 RdvA~~Ra~------~~~~pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~lS 406 (730)
T COG1198 338 RDVAVLRAK------KENAPVVLGSATPS----LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RSLS 406 (730)
T ss_pred HHHHHHHHH------HhCCCEEEecCCCC----HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccC-ccCC
Confidence 33333322 23789999999964 3444444322 222222211 22233333333222111110 1167
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHH------------------------HHhhcccCCcccccccCCCcccc
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVD------------------------LMTYSSMDGDQKSAFLLWPAEEV 1616 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~------------------------L~~~~~~~~~~~~~~l~~~~~~l 1616 (2158)
...+..+.+.+..+.++|+|+|.|-.+-.+... .|++|.........+..|....+
T Consensus 407 ~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L 486 (730)
T COG1198 407 PALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHL 486 (730)
T ss_pred HHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCee
Confidence 888999999999999999999988644222211 12333332222111233333322
Q ss_pred hhh---HhhhhHHHHHHHhcccEEEecCCCCHHH--HHHHHHHHHcCCceEEEecCccccccCCCccEEEE-ec--ceee
Q 000114 1617 EPF---IDNIQEEMLKATLRHGVGYLHEGLNKTD--QEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MG--TQYY 1688 (2158)
Q Consensus 1617 ~~~---~~~i~d~~L~~~l~~gv~~~H~~l~~~d--R~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI-~g--t~~y 1688 (2158)
... .+++.++.-+.+....|..+-++.+... -+..+..|.+|+++|||.|+.++.|.|+|+++.|. .+ +-.+
T Consensus 487 ~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~ 566 (730)
T COG1198 487 RAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLG 566 (730)
T ss_pred EEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhc
Confidence 222 4555555555555778888888765543 46788999999999999999999999999988665 22 2222
Q ss_pred cCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHH
Q 000114 1689 DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQ 1768 (2158)
Q Consensus 1689 d~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~q 1768 (2158)
.+.- +.......-+.|-+|||||.+ ..|.++|.+..++...++..+..
T Consensus 567 ~~Df-RA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~hp~i~~~~~~----------------------------- 614 (730)
T COG1198 567 SPDF-RASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDHPAIQALKRG----------------------------- 614 (730)
T ss_pred CCCc-chHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCCcHHHHHHHhc-----------------------------
Confidence 2211 112234777889999999974 89999999999886555543332
Q ss_pred HHHHHHHHhhhhhhhccCCCCccCCCC
Q 000114 1769 DAVDYLTWTFMYRRLTQNPNYYNLQGV 1795 (2158)
Q Consensus 1769 d~id~l~~t~~yrRl~~nP~~Y~~~~~ 1795 (2158)
|.-.|.....-.|+....|.||.+..+
T Consensus 615 dy~~F~~~El~~Rk~~~~PPf~~l~~v 641 (730)
T COG1198 615 DYEAFYEQELAERKELGLPPFSRLAAV 641 (730)
T ss_pred CHHHHHHHHHHHHHhcCCCChhhheee
Confidence 223344444456777788999987654
No 208
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.84 E-value=7.2e-19 Score=236.72 Aligned_cols=319 Identities=20% Similarity=0.227 Sum_probs=192.5
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
.|.|+|..+...++.. ..++|++-..|.|||..+.+.+-..+..+. ..+++||||. .|+.|+..++.++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~---------~~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR---------AERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC---------CCcEEEEcCH-HHHHHHHHHHHHH
Confidence 6999999998876654 346999999999999999777665554432 2379999997 8999999999876
Q ss_pred cccCCcEEEEEeCCCccC-----HhhhccccEEEcchhHHHHHHhcc--CCCccccccceEEeecccccccC--ChhhHH
Q 000114 574 LQMYDVKVRELSGDQTLT-----RQQIEETQIIVTTPEKWDIITRKS--GDRTYTQLVKLLIIDEIHLLHDN--RGPVLE 644 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~-----~~~~~~~~IiV~TPekld~l~r~~--~~~~~l~~v~lIIiDEaH~l~d~--rg~~le 644 (2158)
|. +.+..+.++.... .......+++|+|.+.+ .+.. .....-...++|||||||++... ......
T Consensus 222 F~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l---~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 222 FN---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFL---RRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred hC---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHh---hhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 63 4444444432111 11233578999998854 2211 01111235799999999998631 111111
Q ss_pred HHHHHHHHHHhhccccccEEEEccccCC--hHH---------------HHHHHh-----------------ccc------
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSATLPN--YED---------------VALFLR-----------------VNL------ 684 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSATlpn--~~d---------------v~~~l~-----------------~~~------ 684 (2158)
..+..+. .....+++||||+-. .++ ...|.. ...
T Consensus 296 ~~v~~La------~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~ 369 (956)
T PRK04914 296 QVVEQLA------EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDAL 369 (956)
T ss_pred HHHHHHh------hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHH
Confidence 2222221 123468999999531 111 111110 000
Q ss_pred -----------------------------------------cCceEEecCCcccc---cce-eEEEeeccCChhHH----
Q 000114 685 -----------------------------------------EKGLFYFDNSYRPV---PLS-QQYIGIQVKKPLQR---- 715 (2158)
Q Consensus 685 -----------------------------------------~~~~~~f~~~~rpv---~l~-~~~~~~~~~~~~~~---- 715 (2158)
..+-+.|.....-+ |-. .+.+.+........
T Consensus 370 ~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~ 449 (956)
T PRK04914 370 NALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKV 449 (956)
T ss_pred HHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHH
Confidence 00001111100000 000 00011100000000
Q ss_pred ---------------HHHh------------hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHH-hhccccccccc
Q 000114 716 ---------------FQLM------------NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT-ALENDTLGRFL 767 (2158)
Q Consensus 716 ---------------~~~l------------~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~-~~~~~~~~~~~ 767 (2158)
+..+ .+.+. .+++...+.++||||+++..+..++..|+.. |
T Consensus 450 ~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~-~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~G---------- 518 (956)
T PRK04914 450 SLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLI-DFLKSHRSEKVLVICAKAATALQLEQALREREG---------- 518 (956)
T ss_pred hHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHH-HHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccC----------
Confidence 0000 00011 1222233679999999999999999988542 2
Q ss_pred ccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCC--CceEEEechhhhhccCCCceEEEEec
Q 000114 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG--HVQVLVSTATLAWGVNLPAHTVIIKG 845 (2158)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g--~i~VLVaT~tla~GVdlP~v~vVI~~ 845 (2158)
..+..+||+|+..+|..+.+.|+++ ..+|||||+++++|+|++.+++||++
T Consensus 519 ---------------------------i~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 519 ---------------------------IRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred ---------------------------eeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 2245679999999999999999984 69999999999999999999999996
Q ss_pred ccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 846 TQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 846 ~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
+.|++| ..|.||+||+||.|.. |.+.++
T Consensus 572 DlP~nP----------~~~eQRIGR~~RiGQ~--~~V~i~ 599 (956)
T PRK04914 572 DLPFNP----------DLLEQRIGRLDRIGQK--HDIQIH 599 (956)
T ss_pred cCCCCH----------HHHHHHhcccccCCCC--ceEEEE
Confidence 666554 5799999999998854 444433
No 209
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=4.9e-19 Score=231.05 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.+.++|-..--. ++. . -|+.++||+|||++|.+|++..+..+ ..+++++|++.||.|.++.+..++
T Consensus 82 ~~ydvQliGg~~-Lh~-G-~Iaem~TGeGKTL~a~Lpa~~~al~G-----------~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 82 RHFDVQLIGGMV-LHE-G-NIAEMRTGEGKTLVATLPAYLNAISG-----------RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CcchHHHhhhhh-hcc-C-ccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 455666544333 332 2 58899999999999999999776543 258999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhccCC---CccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~~---~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+.++|+.+...+ ....++|+++||+++ |.+..+... ......+.++||||||.+
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsi 214 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhh
Confidence 9999999999999775543 334789999999995 766554221 112367899999999966
No 210
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.83 E-value=6.6e-19 Score=242.59 Aligned_cols=339 Identities=14% Similarity=0.144 Sum_probs=197.4
Q ss_pred CCCCHHHHHHHHHHh----cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1340 KHFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~----~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
..++++|.+|+..+. ++.+++++++|||||||.++...+.+.+.. ...+ ++|||+|+++|+.|..+.|+. ++
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~~~~--rVLfLvDR~~L~~Qa~~~F~~-~~ 487 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-KRFR--RILFLVDRSALGEQAEDAFKD-TK 487 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-CccC--eEEEEecHHHHHHHHHHHHHh-cc
Confidence 358999999998875 355679999999999999875544444433 3334 999999999999999999883 43
Q ss_pred CCCCcEEEEEcCCcch-hhhcccCCcEEEeCHHHHHHHHhhhh---ccccccceeEEEecccccccC------C---CCC
Q 000114 1416 QGLGMRVVELTGETAM-DLKLLEKGQIIISTPEKWDALSRRWK---QRKYVQQVSLFIIDELHLIGG------Q---GGP 1482 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~-~~~~l~~~~IIV~TPe~l~~l~r~~~---~~~~l~~v~llIiDEaH~l~~------~---~g~ 1482 (2158)
...+..+..+.+-... +...-..++|+|+|..++........ ....+..+++||+||||+-.. . ...
T Consensus 488 ~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 488 IEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred cccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 2112121111111100 11112346999999998755432111 113467899999999998421 0 111
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCC----------CCc-ccccEEEE--ecccc
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPP----------GVR-PVPLEIHI--QGVDI 1549 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~----------~~r-pv~l~~~i--~~~~~ 1549 (2158)
.....++..+.+.... +...||||||+.. ....++|.. ++.++- .+. |..+...+ .+...
T Consensus 568 ~~~~~~~~yr~iL~yF--dA~~IGLTATP~r--~t~~~FG~p---v~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYF--DAVKIGLTATPAL--HTTEIFGEP---VYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred hhhhHHHHHHHHHhhc--CccEEEEecCCcc--chhHHhCCe---eEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 1222345555555433 3578999999852 334445531 211110 000 11111110 00000
Q ss_pred ------------------cchHH----HHHhcC---------hHHHHHHHHhHh--cCCCEEEEecChHHHHHHHHHHHh
Q 000114 1550 ------------------TNFEA----RMQAMT---------KPTFTAIVQHAK--NEKPALVFVPSRKYVRLTAVDLMT 1596 (2158)
Q Consensus 1550 ------------------~~~~~----~~~~~~---------k~~~~~i~~~~~--~~~~~IVFv~sr~~~~~~a~~L~~ 1596 (2158)
..... ....++ +.....+..++. ..+++||||.++++|+.++..|..
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 00000 000111 111222333322 236899999999999988877643
Q ss_pred hcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCc-eEEEecCccccccCC
Q 000114 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI-KVCVMSSSMCWGVPL 1675 (2158)
Q Consensus 1597 ~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i-~VLVaT~~la~Gvdl 1675 (2158)
..... ........+..+||+.+ ++..+++.|+++.. +|+|+++.+.+|+|+
T Consensus 721 ~f~~~--------------------------~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~Dv 772 (1123)
T PRK11448 721 AFKKK--------------------------YGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDV 772 (1123)
T ss_pred HHHhh--------------------------cCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCc
Confidence 21100 00001123556888875 56789999999987 799999999999999
Q ss_pred CccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCC-CceEEEEEecC
Q 000114 1676 TAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHA 1727 (2158)
Q Consensus 1676 p~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d-~~G~~iil~~~ 1727 (2158)
|.+..||. + ..+.|...|+||+||+.|...+ ++-.++|+-.-
T Consensus 773 P~v~~vVf----~------rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 773 PSICNLVF----L------RRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccccEEEE----e------cCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 98888872 2 2335899999999999997422 24445555433
No 211
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.83 E-value=1.5e-19 Score=209.34 Aligned_cols=184 Identities=21% Similarity=0.283 Sum_probs=144.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+|+.+++.+ .|++.|+++|.++++.++++ .|++++||||+|||++++++++..+..... ..+++++|++|+
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~viii~p~ 78 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLLSG-RDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALILAPT 78 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEEEcCC
Confidence 344455444 58999999999999999885 679999999999999999999998876521 135689999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hh-ccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+.|+...+..+....++.+..++|+...... .. .+++|+|+||+++..+.++.. ..+.+++++|+||+|.+.
T Consensus 79 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 79 RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--LDLSKVKYLVLDEADRML 156 (203)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--CChhhCCEEEEeChHHhh
Confidence 9999999999999877778999999998765432 22 378999999999855554443 567889999999999987
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
+ .++..+..++.++ ..+.+++++|||++ .++..++...
T Consensus 157 ~~~~~~~~~~~~~~l-------~~~~~~~~~SAT~~--~~~~~~~~~~ 195 (203)
T cd00268 157 DMGFEDQIREILKLL-------PKDRQTLLFSATMP--KEVRDLARKF 195 (203)
T ss_pred ccChHHHHHHHHHhC-------CcccEEEEEeccCC--HHHHHHHHHH
Confidence 6 4566666655533 45899999999998 4556655543
No 212
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.7e-18 Score=203.29 Aligned_cols=438 Identities=17% Similarity=0.195 Sum_probs=271.4
Q ss_pred HHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHH
Q 000114 1332 YEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1332 ~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
|-.+++ .-.-|---|+.-|-.++..+.-+++++.||||||...-...+...... .+ .+.+..|.|.-|.+++.+.
T Consensus 36 Y~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--~~--~v~CTQprrvaamsva~RV 111 (699)
T KOG0925|consen 36 YYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--LT--GVACTQPRRVAAMSVAQRV 111 (699)
T ss_pred HHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--cc--ceeecCchHHHHHHHHHHH
Confidence 444444 223344457788888888888899999999999965433333333331 23 6889999999999999988
Q ss_pred HHHhcCCCCcEEEEEcCCcchhhhcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1411 EIKFGQGLGMRVVELTGETAMDLKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~~~~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
...+.-.+|-.|+... ..+.- .+.-+-++|.+. ++|.......+...+++|+||||. |.-.-..+.
T Consensus 112 adEMDv~lG~EVGysI-----rfEdC~~~~T~Lky~tDgm---LlrEams~p~l~~y~viiLDeahE----RtlATDiLm 179 (699)
T KOG0925|consen 112 ADEMDVTLGEEVGYSI-----RFEDCTSPNTLLKYCTDGM---LLREAMSDPLLGRYGVIILDEAHE----RTLATDILM 179 (699)
T ss_pred HHHhccccchhccccc-----cccccCChhHHHHHhcchH---HHHHHhhCcccccccEEEechhhh----hhHHHHHHH
Confidence 8766544444443211 11110 011123445444 445555567889999999999993 222334455
Q ss_pred HHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHH
Q 000114 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIV 1568 (2158)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~ 1568 (2158)
.-++.+.... ++.++|.+|||+ .+..+..|++..+ +...+. .. |+++.+......++ +.+..+..++ |.
T Consensus 180 Gllk~v~~~r-pdLk~vvmSatl-~a~Kfq~yf~n~P--ll~vpg-~~--PvEi~Yt~e~erDy---lEaairtV~q-ih 248 (699)
T KOG0925|consen 180 GLLKEVVRNR-PDLKLVVMSATL-DAEKFQRYFGNAP--LLAVPG-TH--PVEIFYTPEPERDY---LEAAIRTVLQ-IH 248 (699)
T ss_pred HHHHHHHhhC-CCceEEEeeccc-chHHHHHHhCCCC--eeecCC-CC--ceEEEecCCCChhH---HHHHHHHHHH-HH
Confidence 6666666554 599999999998 6778888887664 344333 33 44554433332222 2222222222 22
Q ss_pred HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHH
Q 000114 1569 QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2158)
Q Consensus 1569 ~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR 1648 (2158)
.. ...+.++||.++.++.+..++.+..... ..........|..+| +.++
T Consensus 249 ~~-ee~GDilvFLtgeeeIe~aC~~i~re~~--------------------------~L~~~~g~l~v~PLy----P~~q 297 (699)
T KOG0925|consen 249 MC-EEPGDILVFLTGEEEIEDACRKISREVD--------------------------NLGPQVGPLKVVPLY----PAQQ 297 (699)
T ss_pred hc-cCCCCEEEEecCHHHHHHHHHHHHHHHH--------------------------hhccccCCceEEecC----chhh
Confidence 22 4567899999999998888876632111 011111223366666 3333
Q ss_pred HHHHHHHH---cC--CceEEEecCccccccCCCccEEEEe-c---ceeecCCCCc----CcCCCHHHHHHhhccCCCCCC
Q 000114 1649 EVVSALFE---AG--KIKVCVMSSSMCWGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1649 ~~v~~~F~---~g--~i~VLVaT~~la~Gvdlp~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
..+++... +| ..+|+|+|+.++..+.++++.+||. | .+.|+++... -.|+|..+..||.|||||.
T Consensus 298 q~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-- 375 (699)
T KOG0925|consen 298 QRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-- 375 (699)
T ss_pred ccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC--
Confidence 33333322 22 4589999999999999999999993 2 3568887432 4578899999999999994
Q ss_pred CCceEEEEEecCChHHHHHHHhh---CCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccC
Q 000114 1716 DNSGKCVILCHAPRKEYYKKFLY---DAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1792 (2158)
Q Consensus 1716 d~~G~~iil~~~~~~~~~~k~l~---~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~ 1792 (2158)
..|+|+-++.+ .++++-+. -|+..+|+|..... +...-.|.+ ...+.|+ ..|.
T Consensus 376 -~pGkcfrLYte---~~~~~em~~~typeilrsNL~s~VL-----~LKklgI~d------lvhfdfm-----DpPA---- 431 (699)
T KOG0925|consen 376 -RPGKCFRLYTE---EAFEKEMQPQTYPEILRSNLSSTVL-----QLKKLGIDD------LVHFDFM-----DPPA---- 431 (699)
T ss_pred -CCCceEEeecH---HhhhhcCCCCCcHHHHHHhhHHHHH-----HHHhcCccc------ccCCcCC-----CCCC----
Confidence 79999999876 44554443 23345555533222 111111111 1111121 1121
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhc
Q 000114 1793 QGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLAS 1870 (2158)
Q Consensus 1793 ~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~ 1870 (2158)
-|.+..|+++|.-.+|+ ++++++ |.+|.+||.|+++|.-++++..+-..++. .++|.|-|+
T Consensus 432 ------------PEtLMrALE~LnYLaaL--dDdGnL--T~lG~imSEFPLdPqLAkmLi~S~efnCs-nEiLsisAM 492 (699)
T KOG0925|consen 432 ------------PETLMRALEVLNYLAAL--DDDGNL--TSLGEIMSEFPLDPQLAKMLIGSCEFNCS-NEILSISAM 492 (699)
T ss_pred ------------hHHHHHHHHHhhhhhhh--CCCccc--chhhhhhhcCCCChHHHHHHhhcCCCCch-HHHHHHHhc
Confidence 26778899999988888 455545 55699999999999999999987766665 566665543
No 213
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.82 E-value=6e-18 Score=227.93 Aligned_cols=342 Identities=15% Similarity=0.166 Sum_probs=206.3
Q ss_pred CCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1340 KHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
..+.|+|..+...++.. ..++|++-..|-|||+-+.+.+-..+.. ...+ +++||||. .|+.|+..++.++|+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~--rvLIVvP~-sL~~QW~~El~~kF~--- 223 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAE--RVLILVPE-TLQHQWLVEMLRRFN--- 223 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCC--cEEEEcCH-HHHHHHHHHHHHHhC---
Confidence 36999999998887642 3469999999999999996655544444 3334 89999997 899999999987885
Q ss_pred CcEEEEEcCCcchh-----hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHH
Q 000114 1419 GMRVVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMR 1492 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~ 1492 (2158)
+.+..+.++.... ...+...+++|+|.+.+..-. .+.....-..++++||||||++... ..+.- ....+.
T Consensus 224 -l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~-~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~--~y~~v~ 299 (956)
T PRK04914 224 -LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNK-QRLEQALAAEWDLLVVDEAHHLVWSEEAPSR--EYQVVE 299 (956)
T ss_pred -CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCH-HHHHHHhhcCCCEEEEechhhhccCCCCcCH--HHHHHH
Confidence 3444444432211 123345689999977543211 1111112246899999999999632 11111 122333
Q ss_pred HHHhhcCCCceEEEeccCCCC--hHHH---------------HHHhc-----------------cCC-C-----ce----
Q 000114 1493 YIASQVENKIRIVALSTSLAN--AKDL---------------GEWIG-----------------ATS-H-----GL---- 1528 (2158)
Q Consensus 1493 ~i~~~~~~~~riV~lSATl~n--~~dl---------------~~wl~-----------------~~~-~-----~i---- 1528 (2158)
.+.. ....+++||||+-. ..++ ..|.. ... . .+
T Consensus 300 ~La~---~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll 376 (956)
T PRK04914 300 QLAE---VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELL 376 (956)
T ss_pred HHhh---ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHh
Confidence 3332 23468999999853 2111 11110 000 0 00
Q ss_pred --------------------------------------EecCCC---Ccccc-cEEEEeccccc-chHHHH---------
Q 000114 1529 --------------------------------------FNFPPG---VRPVP-LEIHIQGVDIT-NFEARM--------- 1556 (2158)
Q Consensus 1529 --------------------------------------~~f~~~---~rpv~-l~~~i~~~~~~-~~~~~~--------- 1556 (2158)
+-|+.. ....| -..+......+ .+....
T Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~ 456 (956)
T PRK04914 377 GEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARAR 456 (956)
T ss_pred cccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHH
Confidence 000000 00000 00000001110 000000
Q ss_pred ---------Hh--------cChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccch
Q 000114 1557 ---------QA--------MTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2158)
Q Consensus 1557 ---------~~--------~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2158)
.. -..+....+...+ ....++||||+++..+..++..|.
T Consensus 457 ~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~---------------------- 514 (956)
T PRK04914 457 DMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALR---------------------- 514 (956)
T ss_pred hhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHh----------------------
Confidence 00 0011122222222 236789999999999988886552
Q ss_pred hhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcC--CceEEEecCccccccCCCccEEEEecceeecCCCCcC
Q 000114 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG--KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAH 1695 (2158)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g--~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~ 1695 (2158)
...+..+..+||+|+..+|..+.+.|+++ ..+|||||+++++|+|++.+.+|| +++
T Consensus 515 ------------~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VI----------nfD 572 (956)
T PRK04914 515 ------------EREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLV----------LFD 572 (956)
T ss_pred ------------hccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEE----------Eec
Confidence 22345678899999999999999999984 699999999999999999999998 778
Q ss_pred cCCCHHHHHHhhccCCCCCCCCceEEEEEecCC-hHHHHHHHhhC
Q 000114 1696 TDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFLYD 1739 (2158)
Q Consensus 1696 ~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~-~~~~~~k~l~~ 1739 (2158)
.|.++..|.||+||+||.|..+...+++++... ..+.+..++.+
T Consensus 573 lP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 573 LPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred CCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 899999999999999999855444444444443 23444444444
No 214
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.9e-18 Score=225.09 Aligned_cols=352 Identities=16% Similarity=0.196 Sum_probs=218.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|--.--.+..| -|....||+|||+++.+|++.....+ ..+-+++|+--||.+-++.+...+
T Consensus 80 ~~~dvQlig~l~l~~G---~iaEm~TGEGKTLvA~l~a~l~al~G-----------~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 80 RPFDVQIIGGIVLHEG---NIAEMKTGEGKTLTATLPVYLNALTG-----------KGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCchhHHHHHHHHhcC---CcccccCCCCCcHHHHHHHHHHHHcC-----------CCeEEEeccHHHHHhhHHHHHHHH
Confidence 5677787665543332 38899999999999999998887654 368999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCH-hhhccccEEEcchhHH--HHHHhcc---CCCccccccceEEeecccccc-c-CChhh----
Q 000114 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGPV---- 642 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l~-d-~rg~~---- 642 (2158)
..+|++|+.++|+.+... +..-.++|+++|...+ |.|.-+. .+........+.||||||.++ | .|.|.
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 999999999999875543 3456899999999875 5554432 122234567899999999652 3 12211
Q ss_pred -------HHHHHHHHHHHHhhc----------------cccccEEEEccc----------cCC---hH--HHHHHHhccc
Q 000114 643 -------LESIVARTVRQIETT----------------KEHIRLVGLSAT----------LPN---YE--DVALFLRVNL 684 (2158)
Q Consensus 643 -------le~iv~r~~~~~~~~----------------~~~~riv~lSAT----------lpn---~~--dv~~~l~~~~ 684 (2158)
+-..+.++...+... ...-+.+.++.. ++| .+ .+..|+...+
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 111222222211110 011222333321 111 01 1222221100
Q ss_pred ---------------cCceEEecC-Cccc-------------------ccc------------------ee---------
Q 000114 685 ---------------EKGLFYFDN-SYRP-------------------VPL------------------SQ--------- 702 (2158)
Q Consensus 685 ---------------~~~~~~f~~-~~rp-------------------v~l------------------~~--------- 702 (2158)
...+...+. .-|. +++ ..
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 000011100 0000 000 00
Q ss_pred -------------EEEeeccCCh--------------hHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHH
Q 000114 703 -------------QYIGIQVKKP--------------LQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIR 754 (2158)
Q Consensus 703 -------------~~~~~~~~~~--------------~~~~~~l~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~ 754 (2158)
.++.++..++ ..+.. .+.+.+.+ +..+.|+||||+|+..++.++..|.
T Consensus 386 ~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~----al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~ 461 (796)
T PRK12906 386 KTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFN----AVVKEIKERHAKGQPVLVGTVAIESSERLSHLLD 461 (796)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHH----HHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 0111111111 11111 12222322 3357899999999999999999998
Q ss_pred HHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhcc
Q 000114 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834 (2158)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GV 834 (2158)
..++.. ..+||++...++..+...++.|. |+|||++++||.
T Consensus 462 ~~gi~~-------------------------------------~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGt 502 (796)
T PRK12906 462 EAGIPH-------------------------------------AVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGT 502 (796)
T ss_pred HCCCCe-------------------------------------eEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCC
Confidence 866433 35599999888888888888886 999999999999
Q ss_pred CCC---ceE-----EEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH-------HHHHhh-
Q 000114 835 NLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR-------YYLSLM- 898 (2158)
Q Consensus 835 dlP---~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~-------~y~~ll- 898 (2158)
|++ ++. +||+ ++.+. |...+.|+.|||||.| ..|.+..+++-++.- .+.+++
T Consensus 503 DI~l~~~V~~~GGLhVI~----te~pe------s~ri~~Ql~GRtGRqG--~~G~s~~~~sleD~l~~~f~~~~~~~~~~ 570 (796)
T PRK12906 503 DIKLGPGVKELGGLAVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFYLSLEDDLMRRFGSDRVKAFLD 570 (796)
T ss_pred CCCCCcchhhhCCcEEEe----eecCC------cHHHHHHHhhhhccCC--CCcceEEEEeccchHHHhhCcHHHHHHHH
Confidence 994 888 9998 55443 6678999999999988 679998888775411 122232
Q ss_pred -----cCCCcccchhhHhhHHH
Q 000114 899 -----NQQLPIESQFVSKLADQ 915 (2158)
Q Consensus 899 -----~~~~pieS~l~~~l~d~ 915 (2158)
....||++.+.....+.
T Consensus 571 ~~~~~~~~~~i~~~~~~~~i~~ 592 (796)
T PRK12906 571 RLGMNDDDQVIESRMITRQVES 592 (796)
T ss_pred HcCCCCCCCcccchHHHHHHHH
Confidence 34578888877665544
No 215
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.81 E-value=7.8e-19 Score=203.41 Aligned_cols=176 Identities=24% Similarity=0.367 Sum_probs=136.4
Q ss_pred ChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1328 ~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
+...++.+.. |+..|+++|.++++.+++ +.|++++||||+|||++|.++++..+......++++++|++|+++|+.|+
T Consensus 7 ~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~ 85 (203)
T cd00268 7 SPELLRGIYALGFEKPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQI 85 (203)
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHH
Confidence 3445555554 689999999999999998 56799999999999999999999998884212334999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcchh--hhccc-CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1407 YRDWEIKFGQGLGMRVVELTGETAMD--LKLLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
.+.++. +....++++..++|+.... ...+. +++|+|+||+++..++.+.. ..+++++++|+||+|.+.+..
T Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~l~~lIvDE~h~~~~~~--- 159 (203)
T cd00268 86 AEVARK-LGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--LDLSKVKYLVLDEADRMLDMG--- 159 (203)
T ss_pred HHHHHH-HhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--CChhhCCEEEEeChHHhhccC---
Confidence 999984 5544578899999987653 23333 67999999999988877643 567899999999999987433
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+...+..+...++.+.+++++|||+++
T Consensus 160 ---~~~~~~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 160 ---FEDQIREILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred ---hHHHHHHHHHhCCcccEEEEEeccCCH
Confidence 112222223334568999999999985
No 216
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.80 E-value=1.1e-18 Score=235.74 Aligned_cols=328 Identities=20% Similarity=0.242 Sum_probs=204.5
Q ss_pred CCCHHHHHHHHHHHcC--CC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSS--AD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~--~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
...+.|..++..+... .. .+++.||||+|||.+++.+++........ ...+++|+.|++++++++++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~-------~~~r~i~vlP~~t~ie~~~~r~~ 267 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIK-------LKSRVIYVLPFRTIIEDMYRRAK 267 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcccc-------ccceEEEEccHHHHHHHHHHHHH
Confidence 3488999999888754 23 68999999999999999999888765311 34589999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHhh-----------------hccccEEEcchhHHHH-HHhccCCCc-cccccceEEeecc
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQ-----------------IEETQIIVTTPEKWDI-ITRKSGDRT-YTQLVKLLIIDEI 632 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~-----------------~~~~~IiV~TPekld~-l~r~~~~~~-~l~~v~lIIiDEa 632 (2158)
..++..++....++|.....-.. ..-..++++||-.+-. ......... ..-..+++|+||+
T Consensus 268 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 268 EIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred hhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccH
Confidence 88775543333234432211100 0122355555554322 111111110 0012378999999
Q ss_pred cccccCC-hhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc-eEEecCCcccccceeEEEeeccC
Q 000114 633 HLLHDNR-GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFDNSYRPVPLSQQYIGIQVK 710 (2158)
Q Consensus 633 H~l~d~r-g~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~-~~~f~~~~rpv~l~~~~~~~~~~ 710 (2158)
|.+.++. -..+..++..+ ...+.++|++|||+|. .+.+.+......+ ....... .++..... .+...
T Consensus 348 h~~~~~~~~~~l~~~i~~l------~~~g~~ill~SATlP~--~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~-~~~~~ 416 (733)
T COG1203 348 HLYADETMLAALLALLEAL------AEAGVPVLLMSATLPP--FLKEKLKKALGKGREVVENAK--FCPKEDEP-GLKRK 416 (733)
T ss_pred HhhcccchHHHHHHHHHHH------HhCCCCEEEEecCCCH--HHHHHHHHHHhcccceecccc--cccccccc-ccccc
Confidence 9997763 23333333222 2347899999999994 4444444322221 1111111 11111000 00000
Q ss_pred ChhHHHHHhhHHHHHHHH-HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchh
Q 000114 711 KPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2158)
Q Consensus 711 ~~~~~~~~l~~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (2158)
................+. +...+++++|.|||++.|.+++..|++.+.
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~------------------------------- 465 (733)
T COG1203 417 ERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP------------------------------- 465 (733)
T ss_pred cchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC-------------------------------
Confidence 000000000001111122 223378999999999999999999987642
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHh----CCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHH
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFG----DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM 865 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~----~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~ 865 (2158)
.+..+||.++..+|...++.+. .+...|+|||++.+.|||+. .+++|- ++. ++..++
T Consensus 466 ------~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-----e~a-------PidSLI 526 (733)
T COG1203 466 ------KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-----ELA-------PIDSLI 526 (733)
T ss_pred ------CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee-----cCC-------CHHHHH
Confidence 2567799999999998888554 57889999999999999995 777773 322 567899
Q ss_pred HhhcccCCCCCCCccEEEEEcCCCc
Q 000114 866 QMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 866 Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
||+||++|-|....|.+++......
T Consensus 527 QR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 527 QRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred HHHHHHhhcccccCCceeEeecccC
Confidence 9999999988666788888766543
No 217
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=6.6e-18 Score=220.65 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHH-hcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1342 FNPIQTQVFTVL-YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l-~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
++|+-.|.+-.+ ++.+ -|..++||+|||++|.+|++..... +. .+.+++|++.||.|.++.+. .+...+|+
T Consensus 81 ~~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~---G~--~V~VvTpn~yLA~qd~e~m~-~l~~~lGL 152 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS---GR--GVHIVTVNDYLAKRDSQWMK-PIYEFLGL 152 (896)
T ss_pred CCcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEcCCHHHHHHHHHHHH-HHhcccCc
Confidence 344444444443 2323 4889999999999999999976654 33 68999999999999999888 56666799
Q ss_pred EEEEEcCCcchhhh-cccCCcEEEeCHHHH-HHHHhhhhcc----ccccceeEEEeccccccc
Q 000114 1421 RVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQR----KYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~~~----~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+.++|+.+...+ ....++|+++||+++ .++++..... ...+.+.++||||||.++
T Consensus 153 tv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred eEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 99999998765533 334679999999998 6666653111 123689999999999664
No 218
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.80 E-value=7.6e-19 Score=197.14 Aligned_cols=158 Identities=30% Similarity=0.477 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhccc
Q 000114 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (2158)
Q Consensus 497 ~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~ 576 (2158)
||+|.++++.++ ++++++++||||+|||+++++++++.+.... ..+++|++|+++|+.|+++.+...+..
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~~---------~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEGK---------DARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTS---------SSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccCC---------CceEEEEeecccccccccccccccccc
Confidence 689999999998 4567999999999999999999999887641 238999999999999999999999888
Q ss_pred CCcEEEEEeCCCccCHhh---h-ccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHH
Q 000114 577 YDVKVRELSGDQTLTRQQ---I-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651 (2158)
Q Consensus 577 ~gi~v~~l~Gd~~~~~~~---~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~ 651 (2158)
.++++..++|+....... . .+++|+|+||+++..+.+.... .+.++++|||||+|.+.+ .++..+..++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~- 147 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRL- 147 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHS-
T ss_pred cccccccccccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHh-
Confidence 788999999988754221 2 4699999999998555555322 445599999999999987 5666666655543
Q ss_pred HHHhhccccccEEEEccccC
Q 000114 652 RQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 652 ~~~~~~~~~~riv~lSATlp 671 (2158)
. ...+.+++++|||++
T Consensus 148 ---~-~~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 148 ---K-RFKNIQIILLSATLP 163 (169)
T ss_dssp ---H-TTTTSEEEEEESSST
T ss_pred ---c-CCCCCcEEEEeeCCC
Confidence 1 123689999999987
No 219
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.7e-17 Score=217.15 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHH-HHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL-QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il-~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
.++++|--.--. ++.+ -|..++||+|||++|.+|++ +.+ .+ ..+-+++|+..||.|.++.+..+
T Consensus 81 ~~~dvQlig~l~-L~~G--~Iaem~TGeGKTLva~lpa~l~aL-~G-----------~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 81 RHFDVQLIGGMV-LHEG--KIAEMKTGEGKTLVATLPAYLNAL-TG-----------KGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CCCccHHHhhHH-hcCC--chhhhhcCCCcHHHHHHHHHHHHH-cC-----------CCEEEEecCHHHHHHHHHHHHHH
Confidence 566777665543 3332 48899999999999999996 444 22 14779999999999999999999
Q ss_pred cccCCcEEEEEeCCCccCHhh-hccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 574 LQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
+..+|++|+.++|+.+...+. .-.++|+++||..+ |.+..+.. .....+.+.++||||||.+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 999999999999987765433 34689999999997 66644431 1134567899999999965
No 220
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.78 E-value=4.1e-18 Score=230.12 Aligned_cols=327 Identities=20% Similarity=0.219 Sum_probs=207.6
Q ss_pred CCHHHHHHHHHHhcC--CC-cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1342 FNPIQTQVFTVLYNT--DD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~~--~~-nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
..+.|..++..+... .. .+++.||||+|||.+++.+++..+... .....+++|+.|+++++.+++++++..++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~- 273 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF- 273 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhccc-
Confidence 388999999887652 23 789999999999999988888776662 1123399999999999999999999766543
Q ss_pred CcEEEE-EcCCcchhhh-----------------cccCCcEEEeCHHHHHHHHhhhhccccc--cceeEEEecccccccC
Q 000114 1419 GMRVVE-LTGETAMDLK-----------------LLEKGQIIISTPEKWDALSRRWKQRKYV--QQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1419 g~~v~~-ltG~~~~~~~-----------------~l~~~~IIV~TPe~l~~l~r~~~~~~~l--~~v~llIiDEaH~l~~ 1478 (2158)
+ .... ++|....... ...-..++++||-++....-.......+ -..+++|+||+|.+.+
T Consensus 274 ~-~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 274 S-VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred c-cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 1 1222 3443222100 0011256777777665522111111111 2357899999999976
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHH
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~ 1556 (2158)
+. .+..+..-+..+. ..+.++|++|||+|.. +.+...++.......+.. .-+..-+..+............
T Consensus 353 ~~--~~~~l~~~i~~l~---~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~ 425 (733)
T COG1203 353 ET--MLAALLALLEALA---EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK--FCPKEDEPGLKRKERVDVEDGP 425 (733)
T ss_pred cc--hHHHHHHHHHHHH---hCCCCEEEEecCCCHHHHHHHHHHHhcccceecccc--ccccccccccccccchhhhhhh
Confidence 63 2333333333222 3488999999999974 344444444332111100 0000000000000000000000
Q ss_pred HhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccE
Q 000114 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2158)
Q Consensus 1557 ~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv 1636 (2158)
. ......+......+++++|.|||...|..++..|... .. .+
T Consensus 426 ~---~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~----------------------------------~~-~v 467 (733)
T COG1203 426 Q---EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK----------------------------------GP-KV 467 (733)
T ss_pred h---HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc----------------------------------CC-CE
Confidence 0 0122233344477899999999999999999766321 11 48
Q ss_pred EEecCCCCHHHHHHHHHHHH----cCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1637 GYLHEGLNKTDQEVVSALFE----AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1637 ~~~H~~l~~~dR~~v~~~F~----~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
..+||.+...+|...++.+. .+...|+|||++++.|||+....+|- ...|+.+++||+||++|
T Consensus 468 ~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~mIT-------------e~aPidSLIQR~GRv~R 534 (733)
T COG1203 468 LLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDVLIT-------------ELAPIDSLIQRAGRVNR 534 (733)
T ss_pred EEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCeeee-------------cCCCHHHHHHHHHHHhh
Confidence 99999999999998888654 57889999999999999999665553 34589999999999999
Q ss_pred CCCCCceEEEEEecCCh
Q 000114 1713 PLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~~ 1729 (2158)
.|.+..|.++++.....
T Consensus 535 ~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 535 HGKKENGKIYVYNDEER 551 (733)
T ss_pred cccccCCceeEeecccC
Confidence 98667888888877654
No 221
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.78 E-value=2.8e-18 Score=192.62 Aligned_cols=158 Identities=30% Similarity=0.513 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000114 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (2158)
Q Consensus 1343 ~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v 1422 (2158)
||+|.++++.++. ++++++.||||+|||+++.++++..+.+. ..+ +++|++|+++|+.|+++.+.+.+.. .+.++
T Consensus 1 t~~Q~~~~~~i~~-~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~--~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIIS-GKNVLISAPTGSGKTLAYILPALNRLQEG-KDA--RVLIIVPTRALAEQQFERLRKFFSN-TNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHT-TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSS--EEEEEESSHHHHHHHHHHHHHHTTT-TTSSE
T ss_pred CHHHHHHHHHHHc-CCCEEEECCCCCccHHHHHHHHHhhhccC-CCc--eEEEEeecccccccccccccccccc-ccccc
Confidence 6899999999994 67799999999999999999999988874 334 9999999999999999999966554 57789
Q ss_pred EEEcCCcchh---hhcc-cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhh
Q 000114 1423 VELTGETAMD---LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1423 ~~ltG~~~~~---~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~ 1497 (2158)
..++|+.... ...+ ..++|+|+||+++..+.+.+.. .+.+++++|+||+|.+..+ .+..+..++.++. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~----~ 149 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRLK----R 149 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH----T
T ss_pred ccccccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHhc----C
Confidence 9999987643 2233 4689999999999988887433 4566999999999999764 2333333333221 1
Q ss_pred cCCCceEEEeccCCC
Q 000114 1498 VENKIRIVALSTSLA 1512 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~ 1512 (2158)
..+.+++++|||++
T Consensus 150 -~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 -FKNIQIILLSATLP 163 (169)
T ss_dssp -TTTSEEEEEESSST
T ss_pred -CCCCcEEEEeeCCC
Confidence 22689999999997
No 222
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.77 E-value=3.2e-18 Score=198.62 Aligned_cols=280 Identities=14% Similarity=0.144 Sum_probs=221.6
Q ss_pred ccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCChHHHHHHHHHHHhcCC
Q 000114 1842 YISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQ 1921 (2158)
Q Consensus 1842 ~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqAhlsR~ 1921 (2158)
.|++.||.+|+..+....++..+|.++|+|.||..+ .| ..|..-.--|||.|+.|.
T Consensus 226 gvh~vT~~~f~~~~~~SlTlDelLslfasskElt~~----------------~p--------k~pk~~~ekll~dhlnr~ 281 (610)
T COG5407 226 GVHFVTMEMFYERIDGSLTLDELLSLFASSKELTRM----------------NP--------KGPKCTLEKLLGDHLNRA 281 (610)
T ss_pred ceeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHh----------------CC--------CCCchhHHHHHHHHHhHh
Confidence 477889999999999888999999999999998654 11 112223445899999997
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCC-CCccccCCCCCHHHHHHHHhCCCCC
Q 000114 1922 QVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWER-DSMLLQLPHFMKDLAKRCQENPGKS 2000 (2158)
Q Consensus 1922 ~lp~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~-~s~L~QLP~~~~~~~~~l~~~~~~~ 2000 (2158)
.-. .+. ..+|+.++.-|++|+++|++..+++.++.+++.+.|||+||+.-+ .-+++||||.+.+.++.+.-..
T Consensus 282 ~s~-~fn--~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~--- 355 (610)
T COG5407 282 RSV-EFN--EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRL--- 355 (610)
T ss_pred hcc-cch--heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhh---
Confidence 533 222 678999999999999999999999999999999999999999876 5689999999999998877666
Q ss_pred ccCHHHHhcCCHHHHHHHhC-CChHHHHHHHHHHccCCceEE---EEEEeccccccCCCeEEEEEEEEE--cC-------
Q 000114 2001 IETVFDLVEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDM---SFEVQDSENVRAGEDITLQVVLER--DL------- 2067 (2158)
Q Consensus 2001 i~tv~dl~~~~~~~r~~ll~-~~~~~~~~v~~~~~~~P~i~v---~~~v~~~~~v~~g~~~~l~v~l~r--~~------- 2067 (2158)
|+++.++..+.+++....|+ +...++.++.++++++|++.+ .|=|.++..|++++.-.+.++..- ..
T Consensus 356 I~~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d~~it~~s~~~vslk~~~g~~~~pe~~ts 435 (610)
T COG5407 356 IEGMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLLQAPFLVFEDLFITEKSKERVSLKGYLGAIPGPEHRTS 435 (610)
T ss_pred hhhhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEEecceeecccceecccceeeEEEEEEeccccCCccccc
Confidence 99999999999999998887 788899999999999999987 566778888999987655544421 00
Q ss_pred --------C----------------CCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecc----cceEEEEEE
Q 000114 2068 --------E----------------GRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQ----RKSRVKLDF 2119 (2158)
Q Consensus 2068 --------~----------------~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~----~~~~~~l~f 2119 (2158)
+ +.++.+...||+||......||+.+.+++.+.++- ...++. .....+++|
T Consensus 436 ~~~~~n~~e~~dfe~~~~~~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~~~Qt~~Ii-p~~Si~~v~K~~~d~Ri~~ 514 (610)
T COG5407 436 ALNVYNQVEISDFEASVIETGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAKCEQTVYII-PGGSIATVSKVTLDRRIQG 514 (610)
T ss_pred ccccccccChHHHhhhccCccccccCCCCCCcccCcccccccCcceEEEeeccccceEEe-CCccccccchhhhhccccc
Confidence 0 01234568899999999999999999998776543 333322 234567777
Q ss_pred EecCCCCceEEEEEEEeCCccccCcEEEEEEEe
Q 000114 2120 AAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDV 2152 (2158)
Q Consensus 2120 ~~P~~~G~~~~~l~~~sDsY~G~D~~~~~~l~V 2152 (2158)
.+|+-.|+..+.+.+++-+|+|.+.---+.+-+
T Consensus 515 dv~pvd~T~~~ql~~~ap~~vg~f~~~~ivm~t 547 (610)
T COG5407 515 DVAPVDKTGGKQLIVHAPFMVGAFSVKWIVMLT 547 (610)
T ss_pred ccCccccccceeeeecCchhhccceeeeEEEEe
Confidence 777667888888999999999988776665443
No 223
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=1.5e-16 Score=207.25 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=108.8
Q ss_pred CCCCC---CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 492 GMTQL---NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 492 g~~~l---~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
||..| +|+|.++++.++.+.+ +++.|+||+|||++|.+|++..+..+. .+++|+|++.||.|..+
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~g~-----------~v~IVTpTrELA~Qdae 153 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALTGK-----------PVHLVTVNDYLAQRDCE 153 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhhcC-----------CeEEEeCCHHHHHHHHH
Confidence 67766 9999999999888765 999999999999999999998775421 37899999999999999
Q ss_pred HHHhhcccCCcEEEEEeCCCccCHhh-hccccEEEcchhHH--HHHHhccCCCc----cccccceEEeeccccc
Q 000114 569 NLSNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSGDRT----YTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPekl--d~l~r~~~~~~----~l~~v~lIIiDEaH~l 635 (2158)
.+..+.+.+|++|+.+.|+.+...+. ...++|+|+||+++ |.+..+..... ....+.++||||||.+
T Consensus 154 ~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsm 227 (970)
T PRK12899 154 WVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSI 227 (970)
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhh
Confidence 99999988999999999998876643 34689999999998 66655532211 2245689999999976
No 224
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.7e-17 Score=214.45 Aligned_cols=348 Identities=17% Similarity=0.135 Sum_probs=212.3
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++++|--.--.+ +.+. |....||+|||+++.+|++-.... +. .+-+++|+.-||.+-++.+...|. .+|+
T Consensus 80 ~~~dvQlig~l~l-~~G~--iaEm~TGEGKTLvA~l~a~l~al~---G~--~v~vvT~neyLA~Rd~e~~~~~~~-~LGl 150 (796)
T PRK12906 80 RPFDVQIIGGIVL-HEGN--IAEMKTGEGKTLTATLPVYLNALT---GK--GVHVVTVNEYLSSRDATEMGELYR-WLGL 150 (796)
T ss_pred CCchhHHHHHHHH-hcCC--cccccCCCCCcHHHHHHHHHHHHc---CC--CeEEEeccHHHHHhhHHHHHHHHH-hcCC
Confidence 4556665554444 3233 889999999999999999877766 44 688999999999999999886554 4699
Q ss_pred EEEEEcCCcchh-hhcccCCcEEEeCHHHHH-HHHhhh----hccccccceeEEEeccccccc-CC-C------CC--hH
Q 000114 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRW----KQRKYVQQVSLFIIDELHLIG-GQ-G------GP--VL 1484 (2158)
Q Consensus 1421 ~v~~ltG~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~----~~~~~l~~v~llIiDEaH~l~-~~-~------g~--~~ 1484 (2158)
+|+.++|+.+.. .+..-.++|+++|...+- +.+|-. ......+.+.+.||||+|.++ ++ + |+ ..
T Consensus 151 ~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~ 230 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKA 230 (796)
T ss_pred eEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcc
Confidence 999999987654 445567899999998763 233321 112234567899999999553 11 1 11 11
Q ss_pred HHHHHHHHHHHhhcCC-------------------CceEEEecc----------CCCC---hH--HHHHHhcc-------
Q 000114 1485 EVIVSRMRYIASQVEN-------------------KIRIVALST----------SLAN---AK--DLGEWIGA------- 1523 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~-------------------~~riV~lSA----------Tl~n---~~--dl~~wl~~------- 1523 (2158)
..++..+..+..++.. ..+.|.++. .++| .. .+..|+..
T Consensus 231 ~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l 310 (796)
T PRK12906 231 TDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYI 310 (796)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHH
Confidence 1222222222221111 122222221 0111 11 12222210
Q ss_pred ---CCC------ce------------------------------------------------------------------
Q 000114 1524 ---TSH------GL------------------------------------------------------------------ 1528 (2158)
Q Consensus 1524 ---~~~------~i------------------------------------------------------------------ 1528 (2158)
... .+
T Consensus 311 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~ 390 (796)
T PRK12906 311 MLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEE 390 (796)
T ss_pred HhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 000 00
Q ss_pred ---------EecCCCCcccccEEEEecccccc--hHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhh
Q 000114 1529 ---------FNFPPGVRPVPLEIHIQGVDITN--FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTY 1597 (2158)
Q Consensus 1529 ---------~~f~~~~rpv~l~~~i~~~~~~~--~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~ 1597 (2158)
+..-|..+|... .+.+. +... ..-.+.....+......+.|+||||+|+..++.++..|..
T Consensus 391 Ef~~iY~l~vv~IPtnkp~~r------~d~~d~i~~t~-~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~- 462 (796)
T PRK12906 391 EFREIYNMEVITIPTNRPVIR------KDSPDLLYPTL-DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDE- 462 (796)
T ss_pred HHHHHhCCCEEEcCCCCCeee------eeCCCeEEcCH-HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH-
Confidence 000111111100 00000 0000 0001122233333335789999999999999999876632
Q ss_pred cccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCC-
Q 000114 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT- 1676 (2158)
Q Consensus 1598 ~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp- 1676 (2158)
.+.....+||++...++..+.+.++.|. |+|||++++||.|++
T Consensus 463 ----------------------------------~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l 506 (796)
T PRK12906 463 ----------------------------------AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKL 506 (796)
T ss_pred ----------------------------------CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCC
Confidence 2344678999999989899888888877 999999999999995
Q ss_pred --ccE-----EEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH-------HHHHHh-----
Q 000114 1677 --AHL-----VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE-------YYKKFL----- 1737 (2158)
Q Consensus 1677 --~~~-----vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~-------~~~k~l----- 1737 (2158)
.+. +|| +...|-+...+.|+.|||||.| .+|.+..+++-.+.- .+.+++
T Consensus 507 ~~~V~~~GGLhVI----------~te~pes~ri~~Ql~GRtGRqG--~~G~s~~~~sleD~l~~~f~~~~~~~~~~~~~~ 574 (796)
T PRK12906 507 GPGVKELGGLAVI----------GTERHESRRIDNQLRGRSGRQG--DPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLGM 574 (796)
T ss_pred CcchhhhCCcEEE----------eeecCCcHHHHHHHhhhhccCC--CCcceEEEEeccchHHHhhCcHHHHHHHHHcCC
Confidence 666 888 5567788999999999999998 788888777766421 123333
Q ss_pred -hCCCccccchhhHHHH
Q 000114 1738 -YDAFPVESHLHHFLHD 1753 (2158)
Q Consensus 1738 -~~~~piES~L~~~l~d 1753 (2158)
.+..|+++.+.....+
T Consensus 575 ~~~~~~i~~~~~~~~i~ 591 (796)
T PRK12906 575 NDDDQVIESRMITRQVE 591 (796)
T ss_pred CCCCCcccchHHHHHHH
Confidence 3467888887544443
No 225
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.9e-17 Score=215.02 Aligned_cols=128 Identities=17% Similarity=0.102 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++++|--.--.+ +.+ -|..++||+|||++|.+|++-.... +. .+-+++|+..||.|.++.+. .+.+.+|+
T Consensus 81 ~~~dvQlig~l~L-~~G--~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~IvTpn~yLA~rd~e~~~-~l~~~LGl 151 (830)
T PRK12904 81 RHFDVQLIGGMVL-HEG--KIAEMKTGEGKTLVATLPAYLNALT---GK--GVHVVTVNDYLAKRDAEWMG-PLYEFLGL 151 (830)
T ss_pred CCCccHHHhhHHh-cCC--chhhhhcCCCcHHHHHHHHHHHHHc---CC--CEEEEecCHHHHHHHHHHHH-HHHhhcCC
Confidence 4555555444333 333 4889999999999999999633333 23 46699999999999999888 45556799
Q ss_pred EEEEEcCCcchhh-hcccCCcEEEeCHHHH-HHHHhhhhc----cccccceeEEEeccccccc
Q 000114 1421 RVVELTGETAMDL-KLLEKGQIIISTPEKW-DALSRRWKQ----RKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~-~~l~~~~IIV~TPe~l-~~l~r~~~~----~~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+.++|+.+... +....++|+++||..+ .+++|.... ....+.+.++||||||.++
T Consensus 152 sv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 152 SVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred eEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999999877653 2334589999999999 667765321 1246778999999999654
No 226
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=3.8e-16 Score=203.39 Aligned_cols=144 Identities=15% Similarity=0.172 Sum_probs=112.1
Q ss_pred cChhHHHHHh------cCCCCC---CHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 000114 1327 LRNPLYEALY------QGFKHF---NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2158)
Q Consensus 1327 L~~~~~~~l~------~gf~~~---~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia 1397 (2158)
+..+....+. .||..| +|+|.|+++.+..+.+ +++.|+||+|||++|.+|++..+.. +. .+++|+
T Consensus 69 l~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~---g~--~v~IVT 142 (970)
T PRK12899 69 VVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALT---GK--PVHLVT 142 (970)
T ss_pred CCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhh---cC--CeEEEe
Confidence 4444455554 268877 9999999999988655 9999999999999999999977755 23 478999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-cccCCcEEEeCHHHH-HHHHhhhhccc-----cccceeEEEe
Q 000114 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQRK-----YVQQVSLFII 1470 (2158)
Q Consensus 1398 P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~~~~-----~l~~v~llIi 1470 (2158)
|+++||.|.++.+. .+.+.+|++++.+.|+.+...+ ....++|+|+||+++ .++++...... ..+.+.++||
T Consensus 143 pTrELA~Qdae~m~-~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~II 221 (970)
T PRK12899 143 VNDYLAQRDCEWVG-SVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAII 221 (970)
T ss_pred CCHHHHHHHHHHHH-HHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEE
Confidence 99999999999887 5666779999999998876533 223689999999999 77777531111 1235689999
Q ss_pred ccccccc
Q 000114 1471 DELHLIG 1477 (2158)
Q Consensus 1471 DEaH~l~ 1477 (2158)
||||.++
T Consensus 222 DEADsmL 228 (970)
T PRK12899 222 DEVDSIL 228 (970)
T ss_pred echhhhh
Confidence 9999664
No 227
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.1e-16 Score=208.43 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|--.--. ++. .-|..++||.|||++|.+|++.....+ ..|.+|+|+..||.+..+.+..++
T Consensus 82 ~~ydVQliGgl~-L~~--G~IaEm~TGEGKTL~a~lp~~l~al~g-----------~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 82 RHFDVQLLGGMV-LDS--NRIAEMRTGEGKTLTATLPAYLNALTG-----------KGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CcCchHHhcchH-hcC--CccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEeCCHHHHHHHHHHHHHHH
Confidence 345566543322 332 258899999999999999998776543 249999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHhhh-ccccEEEcchhHH--HHHHhccC---CCccccccceEEeecccccc
Q 000114 575 QMYDVKVRELSGDQTLTRQQI-EETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~-~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l~ 636 (2158)
..+|++|+.++|+.+...+.. -.++|+++||..+ |.|..+.. .......+.+.||||||.++
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 999999999999887644433 3789999999996 76655522 11234678899999999663
No 228
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.2e-16 Score=178.74 Aligned_cols=279 Identities=24% Similarity=0.381 Sum_probs=216.4
Q ss_pred CCCCCHHHHHHHhhCCccC-----CCCcCChhHHHHHHHHhhcCCC---CCCCC-CC-ChhHHHHHHHHHHHcCCCCCCC
Q 000114 1021 KPTMGDIELCRLFSLSEEF-----KYVTVRQDEKMELAKLLDRVPI---PVKES-LE-EPSAKINVLLQAYISQLKLEGL 1090 (2158)
Q Consensus 1021 ~~~~~~~~~l~~~s~~~ef-----~~i~~r~~e~~~l~~l~~~~~~---~~~~~-~~-~~~~K~~~llq~~i~~~~~~~~ 1090 (2158)
.+.|...-++-+|+.|.|| +++.-|+.+.-++-.|+..++- .-++. .. .-+.|..+||.||+||++++.=
T Consensus 8 Tp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~d 87 (520)
T KOG4434|consen 8 TPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESD 87 (520)
T ss_pred CchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChh
Confidence 3556667788899999999 5588888888888888876542 11111 11 3467999999999999999877
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHH-------Hc---CC--HHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHH
Q 000114 1091 SLTSDMVFITQSAGRLLRALFEIVL-------KR---GW--AQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158 (2158)
Q Consensus 1091 ~l~~d~~~i~~~a~ri~~a~~ei~~-------~~---~~--~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l 1158 (2158)
.|.-|..||+....|++.-|+..+- ++ .. .....++|.|+.|+.|++|...|||.|+|||.+.-++.+
T Consensus 88 tLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~~ 167 (520)
T KOG4434|consen 88 TLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQHL 167 (520)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHHH
Confidence 8999999999999999988876432 11 11 245678999999999999999999999999999999999
Q ss_pred HhCC-C-CchhhccCChHHhhhhhcC-chhH-HHHHHHHhcCCcceEEEEEeecc---------CceEEEEEEEecCC--
Q 000114 1159 EKKD-F-AWERYYDLSPQELGELIRF-PKMG-RTLHKFVHQFPKLILAAHVQPIT---------RTVLKVELTITPDF-- 1223 (2158)
Q Consensus 1159 ~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~-~~i~~~~~~~P~~~~~~~~~p~~---------~~~~~~~l~~~~~~-- 1223 (2158)
.++- + +..++.-|.+++...||++ .... ..+...+..||.+.++...+-+. +.++.|.|++++.-
T Consensus 168 ~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~l~ 247 (520)
T KOG4434|consen 168 RKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSRLI 247 (520)
T ss_pred hhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEecccc
Confidence 7654 3 7788888899999999874 3333 78889999999999987766442 56777777775420
Q ss_pred --------------------------------------------------------------------------------
Q 000114 1224 -------------------------------------------------------------------------------- 1223 (2158)
Q Consensus 1224 -------------------------------------------------------------------------------- 1223 (2158)
T Consensus 248 d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at~ 327 (520)
T KOG4434|consen 248 DPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPATE 327 (520)
T ss_pred ChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhhh
Confidence
Q ss_pred -------------------------------------------------cccCC-------------------CCCCccc
Q 000114 1224 -------------------------------------------------LWDDK-------------------VHGYVEP 1235 (2158)
Q Consensus 1224 -------------------------------------------------~~~~~-------------------~~~~~~~ 1235 (2158)
.|.+- ||++++|
T Consensus 328 ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyFP 407 (520)
T KOG4434|consen 328 KALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYFP 407 (520)
T ss_pred hhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCCc
Confidence 02110 8998887
Q ss_pred ------EEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEEEEecccccCCCccccccc
Q 000114 1236 ------FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2158)
Q Consensus 1236 ------~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~~~~i~~ 1301 (2158)
||+.|.|.++..+|-.-+..-+-. -.++..+.|++| ..|+-++|.|.+-||+|+|.+...++.+
T Consensus 408 eEKqEwWW~Yi~drKsrtLlt~PyhV~tL~-d~eei~lkF~AP-~~pG~Ytytv~lrSDSYmg~dq~~~lKl 477 (520)
T KOG4434|consen 408 EEKQEWWWLYIADRKSRTLLTMPYHVCTLK-DTEEIELKFPAP-GKPGNYTYTVFLRSDSYMGLDQIKPLKL 477 (520)
T ss_pred chhhheeeeeeecccccceecchhhhhccc-ccceeEEeccCC-CCCCceEEEEEEecccccChhhccceee
Confidence 999999999888876665433221 147888999999 6899999999999999999998877654
No 229
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.71 E-value=2.3e-15 Score=208.04 Aligned_cols=134 Identities=19% Similarity=0.324 Sum_probs=93.4
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
++++|||++|.+..+.++..|...... .++.++..+.. ..|..+
T Consensus 674 ~g~~LVlftS~~~l~~v~~~L~~~~~~-----------------------------------~~~~~l~q~~~-~~r~~l 717 (850)
T TIGR01407 674 SPKILVLFTSYEMLHMVYDMLNELPEF-----------------------------------EGYEVLAQGIN-GSRAKI 717 (850)
T ss_pred CCCEEEEeCCHHHHHHHHHHHhhhccc-----------------------------------cCceEEecCCC-ccHHHH
Confidence 578999999999999999888652211 11122233333 478899
Q ss_pred HHHHhCCCceEEEechhhhhccCCCceE--EEEecccccCCCCC----------------ccccC----CHHHHHHhhcc
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAHT--VIIKGTQIYNPEKG----------------AWTEL----SPLDIMQMLGR 870 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~--vVI~~~~~yd~~~g----------------~~~~~----s~~~~~Qr~GR 870 (2158)
++.|++|...||+||+.+++|||+|+.. .||-...||.++.. .|.++ ....+.|.+||
T Consensus 718 l~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GR 797 (850)
T TIGR01407 718 KKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGR 797 (850)
T ss_pred HHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhcc
Confidence 9999999999999999999999999875 35556677765531 22333 34678999999
Q ss_pred cCCCCCCCccEEEEEcCCCcHHHHHHhhcCCCc
Q 000114 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (2158)
.=|...| .|..+++-..-....|-+.+-..+|
T Consensus 798 lIRs~~D-~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 798 LIRREND-RGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred ccccCCc-eEEEEEEccccccchHHHHHHHhCC
Confidence 9997644 6776666555444556555444455
No 230
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=7e-16 Score=201.06 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=87.3
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcc-cC
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL-EK 1438 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l-~~ 1438 (2158)
-|..++||.|||++|.+|++..... +. .+.+++|+..||.+-++.+. .+-..+|++|+.++|+.....+.- -.
T Consensus 98 ~IaEm~TGEGKTL~a~lp~~l~al~---g~--~VhIvT~ndyLA~RD~e~m~-~l~~~lGlsv~~i~~~~~~~~r~~~Y~ 171 (908)
T PRK13107 98 RIAEMRTGEGKTLTATLPAYLNALT---GK--GVHVITVNDYLARRDAENNR-PLFEFLGLTVGINVAGLGQQEKKAAYN 171 (908)
T ss_pred ccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEeCCHHHHHHHHHHHH-HHHHhcCCeEEEecCCCCHHHHHhcCC
Confidence 5889999999999999999866654 33 58999999999999998877 454567999999999877654332 36
Q ss_pred CcEEEeCHHHH-HHHHhhh-hc---cccccceeEEEeccccccc
Q 000114 1439 GQIIISTPEKW-DALSRRW-KQ---RKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~~-~~---~~~l~~v~llIiDEaH~l~ 1477 (2158)
++|+++||..+ .+++|.. .. ....+.+.++||||||.++
T Consensus 172 ~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 172 ADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred CCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 79999999998 5666653 11 1134678999999999664
No 231
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.69 E-value=5.1e-15 Score=204.60 Aligned_cols=205 Identities=17% Similarity=0.217 Sum_probs=118.5
Q ss_pred ceEEEeccCCC---ChHHHHHHhccCCCceEec-CCCCc-ccccEEEEec-ccccchHHHHHhcChHHHHHHHHhH-hcC
Q 000114 1502 IRIVALSTSLA---NAKDLGEWIGATSHGLFNF-PPGVR-PVPLEIHIQG-VDITNFEARMQAMTKPTFTAIVQHA-KNE 1574 (2158)
Q Consensus 1502 ~riV~lSATl~---n~~dl~~wl~~~~~~i~~f-~~~~r-pv~l~~~i~~-~~~~~~~~~~~~~~k~~~~~i~~~~-~~~ 1574 (2158)
..+|++|||+. +..-+.+.+|........+ .+.+. .....+.+.. .+....... ..........+.... ...
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~-~~~~~~ia~~i~~l~~~~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSL-EEYAQEIASYIIEITAITS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCCh-HHHHHHHHHHHHHHHHhcC
Confidence 56889999997 5667778888754332222 11111 1112222221 111110000 001111122222211 245
Q ss_pred CCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHH
Q 000114 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654 (2158)
Q Consensus 1575 ~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~ 1654 (2158)
+++|||++|.+..+.++..|.... ...++..+..+.. ..|..+++.
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~---------------------------------~~~~~~~l~q~~~-~~r~~ll~~ 720 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELP---------------------------------EFEGYEVLAQGIN-GSRAKIKKR 720 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhc---------------------------------cccCceEEecCCC-ccHHHHHHH
Confidence 789999999999988886663211 0112333444443 578899999
Q ss_pred HHcCCceEEEecCccccccCCCcc---EEEEecceeecCC---------------CCcCc----CCCHHHHHHhhccCCC
Q 000114 1655 FEAGKIKVCVMSSSMCWGVPLTAH---LVVVMGTQYYDGQ---------------ENAHT----DYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1655 F~~g~i~VLVaT~~la~Gvdlp~~---~vVI~gt~~yd~~---------------~~~~~----~~s~~~~lQr~GRaGR 1712 (2158)
|++|+..||+||+.+.+|||+|+. .|||.+.++-.+. .+.+. |..+..+.|.+||.-|
T Consensus 721 F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIR 800 (850)
T TIGR01407 721 FNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIR 800 (850)
T ss_pred HHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccc
Confidence 999999999999999999999953 4556666654332 01112 2236778899999999
Q ss_pred CCCCCceEEEEEecCChHHHHHHHhhCCCc
Q 000114 1713 PLLDNSGKCVILCHAPRKEYYKKFLYDAFP 1742 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~~~~~~~k~l~~~~p 1742 (2158)
.. +..|.++++-..-....|.+.+-..+|
T Consensus 801 s~-~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 801 RE-NDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred cC-CceEEEEEEccccccchHHHHHHHhCC
Confidence 86 567877776555444455444444444
No 232
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=5.7e-16 Score=183.89 Aligned_cols=363 Identities=10% Similarity=0.009 Sum_probs=232.7
Q ss_pred hHHHHHhcC--CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1330 PLYEALYQG--FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1330 ~~~~~l~~g--f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
+....+|.+ -..+..+|.++++.+-+ ++|+++.-.|.+||.+|+.++....+.. .+.. ..+|+.|+++++....
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~-G~~~~~~~~~~~GK~~~~~~~s~~~~~~-~~~s--~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASE-GRADGGNEARQAGKGTCPTSGSRKFQTL-CHAT--NSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhh-cccccccchhhcCCccCcccchhhhhhc-Cccc--ceecchhHHHHhhccC
Confidence 445566665 45788999999998865 6679999999999999999998877666 2333 6799999999998765
Q ss_pred HHHHHHhcCC---CCcEEEEEcCCcchhhhcc--cCCcEEEeCHHHHHH-HH-hhhhccccccceeEEEecccccccCCC
Q 000114 1408 RDWEIKFGQG---LGMRVVELTGETAMDLKLL--EKGQIIISTPEKWDA-LS-RRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1408 ~~~~~~f~~~---~g~~v~~ltG~~~~~~~~l--~~~~IIV~TPe~l~~-l~-r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
+-+.-.+... -..-|-...|++....+.+ .+.+++++.|..... .+ .....+..+-...++++||+|......
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 428 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPT 428 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecch
Confidence 4332111111 0112333344444433322 345899999987643 22 222223345567889999999988776
Q ss_pred CChHHHHHHHHHHHHhhc--CCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHH
Q 000114 1481 GPVLEVIVSRMRYIASQV--ENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~--~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~ 1557 (2158)
|......+.++..++.-+ +.+.+++-.|||+.+. +...+..+...-.++....+-....+.+...+--.+.......
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhh
Confidence 766666666665554432 3578999999999874 4444555555434444333222222222222211111111111
Q ss_pred hcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1558 ~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
.........+.+.+..+-++|.||++|+-|+.+.....+.+... -. .+...|.
T Consensus 509 ~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET--------------------------~~-~LV~~i~ 561 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAET--------------------------AP-HLVEAIT 561 (1034)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHh--------------------------hH-HHHHHHH
Confidence 11222223333444668899999999999987765443211100 00 1112356
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
.|.||-+.+||+.++...-.|++.-+|||++++-|||+.....|+ +..+|+|+..+.|..|||||...+.
T Consensus 562 SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl----------~~GFP~S~aNl~QQ~GRAGRRNk~S 631 (1034)
T KOG4150|consen 562 SYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVL----------HLGFPGSIANLWQQAGRAGRRNKPS 631 (1034)
T ss_pred hhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEE----------EccCchhHHHHHHHhccccccCCCc
Confidence 788999999999999999999999999999999999999998888 5678999999999999999987333
Q ss_pred ceEEEEEecCChHHHHH
Q 000114 1718 SGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~ 1734 (2158)
-...+ ....+-.++|-
T Consensus 632 Lavyv-a~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 632 LAVYV-AFLGPVDQYYM 647 (1034)
T ss_pred eEEEE-EeccchhhHhh
Confidence 33333 33334445554
No 233
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.66 E-value=6e-15 Score=197.64 Aligned_cols=347 Identities=15% Similarity=0.130 Sum_probs=177.6
Q ss_pred CCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 496 LNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
+++.|..|+..++.. .++.+++.|||||||+++...+...+... ...++|+|+|+++|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~---------~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL---------KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc---------CCCeEEEEECcHHHHHHH
Confidence 577888888776432 35799999999999999877765554322 345899999999999999
Q ss_pred HHHHHhhcccCCcEEEEEeCCC-ccCHhh-hccccEEEcchhHHHHHHhccCCCcccccc-ceEEeecccccccCChhhH
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQ-TLTRQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLV-KLLIIDEIHLLHDNRGPVL 643 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~-~~~~~~-~~~~~IiV~TPekld~l~r~~~~~~~l~~v-~lIIiDEaH~l~d~rg~~l 643 (2158)
.+.|....... +. ..+.. .+.... .....|+|+|..++...............- -+||+||||+... | .+
T Consensus 310 ~~~f~~~~~~~---~~-~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~-~~ 382 (667)
T TIGR00348 310 MKEFQSLQKDC---AE-RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--G-EL 382 (667)
T ss_pred HHHHHhhCCCC---Cc-ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--h-HH
Confidence 99998864310 10 01110 011111 124689999999974322111110111111 2899999997542 2 12
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHH--HHHhccccCceEEecC-----CcccccceeEEEe----eccCCh
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVA--LFLRVNLEKGLFYFDN-----SYRPVPLSQQYIG----IQVKKP 712 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~--~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~----~~~~~~ 712 (2158)
...+. ..-++..++|||||+-...+-. ..++......++.+.- .-..+|+...... +.....
T Consensus 383 ~~~l~-------~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l 455 (667)
T TIGR00348 383 AKNLK-------KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKL 455 (667)
T ss_pred HHHHH-------hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHH
Confidence 22221 1235678999999964221111 1111100011111100 0001111110000 000000
Q ss_pred h----------------------H-HHHH---------hhHHHHHHHHHH----hC--CCeEEEEecChHHHHHHHHHHH
Q 000114 713 L----------------------Q-RFQL---------MNDLCYEKVVAV----AG--KHQVLIFVHSRKETAKTARAIR 754 (2158)
Q Consensus 713 ~----------------------~-~~~~---------l~~~~~~~i~~~----~~--~~~vLVFv~sr~~~~~~a~~L~ 754 (2158)
. + .... ....+...+.++ .. +++++|||.+|..|..++..|.
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~ 535 (667)
T TIGR00348 456 DAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALD 535 (667)
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHH
Confidence 0 0 0000 001111112222 12 4789999999999999999887
Q ss_pred HHhhccc-ccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCC-CHHHHHHHHHHHhC-CCceEEEechhhh
Q 000114 755 DTALEND-TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM-TRGDRQLVEDLFGD-GHVQVLVSTATLA 831 (2158)
Q Consensus 755 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl-~~~~R~~v~~~F~~-g~i~VLVaT~tla 831 (2158)
+...... .....+.........+... .+.+... +..- .......+.+.|++ +.++|||+++.+.
T Consensus 536 ~~~~~~~~~~~vv~s~~~~~~~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmll 602 (667)
T TIGR00348 536 EELNEKFEASAIVMTGKESDDAEIRDY---------NKHIRTK----FDKSDGFEIYYKDLERFKKEENPKLLIVVDMLL 602 (667)
T ss_pred hhcccccCCeeEEecCCccchhHHHHH---------HHHhccc----cccchhhhHHHHHHHHhcCCCCceEEEEEcccc
Confidence 6542210 0000000000000001100 0011000 0000 01134568888976 7899999999999
Q ss_pred hccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 832 WGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 832 ~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
.|+|.|.+.+++. |-+. .-..++|++||+.|+-...+-.++|+.-..
T Consensus 603 TGFDaP~l~tLyl-----dKpl------k~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 603 TGFDAPILNTLYL-----DKPL------KYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred cccCCCccceEEE-----eccc------cccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 9999999998874 2221 222589999999995222233355554433
No 234
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.63 E-value=1.1e-14 Score=184.38 Aligned_cols=312 Identities=17% Similarity=0.228 Sum_probs=181.7
Q ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 493 MTQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
-..++.+|..|+..+. .++..+|+++.||+|||.+|+..|-+.+..+. -.+||+++-+++|+.|.+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~---------~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGW---------VKRVLFLADRNALVDQAYG 233 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcch---------hheeeEEechHHHHHHHHH
Confidence 4578999999997654 35556999999999999999766555544332 2489999999999999999
Q ss_pred HHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhcc---CCCccccccceEEeecccccccCChhhHHH
Q 000114 569 NLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS---GDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~---~~~~~l~~v~lIIiDEaH~l~d~rg~~le~ 645 (2158)
.|...+. .+-.+..+.+.... ..++|.|+|...+-...... ..+.....++||||||||+=.- ..+..
T Consensus 234 af~~~~P-~~~~~n~i~~~~~~-----~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~---~~~~~ 304 (875)
T COG4096 234 AFEDFLP-FGTKMNKIEDKKGD-----TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY---SEWSS 304 (875)
T ss_pred HHHHhCC-CccceeeeecccCC-----cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH---hhhHH
Confidence 9888654 44444444443222 15799999999873222222 1234456689999999996221 11234
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec----------CCccccc--ceeEEEeeccCChh
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD----------NSYRPVP--LSQQYIGIQVKKPL 713 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~----------~~~rpv~--l~~~~~~~~~~~~~ 713 (2158)
|+..+ ....+|++||+.+..+...+--.+ ..+++.++ ..++++. +....-|+......
T Consensus 305 I~dYF---------dA~~~gLTATP~~~~d~~T~~~F~-g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~s 374 (875)
T COG4096 305 ILDYF---------DAATQGLTATPKETIDRSTYGFFN-GEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGS 374 (875)
T ss_pred HHHHH---------HHHHHhhccCcccccccccccccC-CCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccc
Confidence 44333 122367799976543333322111 01111110 0112211 11111111111100
Q ss_pred ----------------------HHH---HHhhHHHHHHHHHHh-----C--CCeEEEEecChHHHHHHHHHHHHHhhccc
Q 000114 714 ----------------------QRF---QLMNDLCYEKVVAVA-----G--KHQVLIFVHSRKETAKTARAIRDTALEND 761 (2158)
Q Consensus 714 ----------------------~~~---~~l~~~~~~~i~~~~-----~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (2158)
.+. ..-.+.+...+.+.. + .+++||||.+..+|+.+...|.+......
T Consensus 375 erek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~ 454 (875)
T COG4096 375 EREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN 454 (875)
T ss_pred hhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc
Confidence 000 000111111222221 1 35899999999999999999987643311
Q ss_pred ccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHh-CCCceEEEechhhhhccCCCceE
Q 000114 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG-DGHVQVLVSTATLAWGVNLPAHT 840 (2158)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~-~g~i~VLVaT~tla~GVdlP~v~ 840 (2158)
+.+ +....+ =....+..+-+.+. +.--+|.|+.+.|..|||+|.+.
T Consensus 455 --~~~------------------------------a~~IT~-d~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~ 501 (875)
T COG4096 455 --GRY------------------------------AMKITG-DAEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVV 501 (875)
T ss_pred --Cce------------------------------EEEEec-cchhhHHHHHHHHhcCCCCceEEehhhhhcCCCchhee
Confidence 000 111122 22334444544444 45568999999999999999998
Q ss_pred EEEecccccCCCCCccccCCHHHHHHhhcccCCCC
Q 000114 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2158)
Q Consensus 841 vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2158)
.++- +-.- .|..-|.||+||+-|.-
T Consensus 502 nlVF-----~r~V-----rSktkF~QMvGRGTRl~ 526 (875)
T COG4096 502 NLVF-----DRKV-----RSKTKFKQMVGRGTRLC 526 (875)
T ss_pred eeee-----hhhh-----hhHHHHHHHhcCccccC
Confidence 8884 3221 27888999999999963
No 235
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.63 E-value=1.7e-14 Score=193.31 Aligned_cols=349 Identities=14% Similarity=0.109 Sum_probs=180.8
Q ss_pred CCCHHHHHHHHHHhc---------CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~---------~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
.+++.|..|+..+++ +.++.+|..|||||||+++...+...+.. ... +++|+|+|+++|..|..+.|.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-~~~--~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-LKN--PKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-cCC--CeEEEEECcHHHHHHHHHHHH
Confidence 367889999888643 23579999999999999987666554433 223 399999999999999999998
Q ss_pred HHhcCCCCcEEEEEcCCcchhh-hccc--CCcEEEeCHHHHHHHHhhhhcccccc-ceeEEEecccccccCCCCChHHHH
Q 000114 1412 IKFGQGLGMRVVELTGETAMDL-KLLE--KGQIIISTPEKWDALSRRWKQRKYVQ-QVSLFIIDELHLIGGQGGPVLEVI 1487 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~~~~~-~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~-~v~llIiDEaH~l~~~~g~~~e~~ 1487 (2158)
. ++.. .+. ..+. ..+. ..+. ...|+|+|.+++......+....... .-.+||+||||+.... . +
T Consensus 315 ~-~~~~---~~~-~~~s-~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~---~---~ 382 (667)
T TIGR00348 315 S-LQKD---CAE-RIES-IAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG---E---L 382 (667)
T ss_pred h-hCCC---CCc-ccCC-HHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch---H---H
Confidence 4 4321 010 0111 1111 1122 35899999999875433321111111 1128999999976421 1 2
Q ss_pred HHHHHHHHhhcCCCceEEEeccCCCChHH--HHHHhccC-CCceEecCC-----CCcccccEEEEec----ccccc----
Q 000114 1488 VSRMRYIASQVENKIRIVALSTSLANAKD--LGEWIGAT-SHGLFNFPP-----GVRPVPLEIHIQG----VDITN---- 1551 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSATl~n~~d--l~~wl~~~-~~~i~~f~~-----~~rpv~l~~~i~~----~~~~~---- 1551 (2158)
...|+. .+ ++...+|||||+-...+ -...++.. ...++.+.- ..-.+|+...... .+...
T Consensus 383 ~~~l~~---~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~ 458 (667)
T TIGR00348 383 AKNLKK---AL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAF 458 (667)
T ss_pred HHHHHh---hC-CCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHH
Confidence 222322 22 35789999999854211 11122211 011111100 0011111111000 00000
Q ss_pred hHHHHH-------------------h-----c----ChHHHHHHHHhH----h-cCCCEEEEecChHHHHHHHHHHHhhc
Q 000114 1552 FEARMQ-------------------A-----M----TKPTFTAIVQHA----K-NEKPALVFVPSRKYVRLTAVDLMTYS 1598 (2158)
Q Consensus 1552 ~~~~~~-------------------~-----~----~k~~~~~i~~~~----~-~~~~~IVFv~sr~~~~~~a~~L~~~~ 1598 (2158)
+..... . . .......+..+. . .+++++|||.++..|..+...|....
T Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~ 538 (667)
T TIGR00348 459 FDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEEL 538 (667)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhc
Confidence 000000 0 0 011111222221 1 24789999999999999998876543
Q ss_pred ccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-CCceEEEecCccccccCCCc
Q 000114 1599 SMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-GKIKVCVMSSSMCWGVPLTA 1677 (2158)
Q Consensus 1599 ~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g~i~VLVaT~~la~Gvdlp~ 1677 (2158)
..........++..... .... ......+... +...-.......+.+.|++ +.++|||+++.+..|+|.|.
T Consensus 539 ~~~~~~~~vv~s~~~~~-~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~ 609 (667)
T TIGR00348 539 NEKFEASAIVMTGKESD-DAEI-----RDYNKHIRTK---FDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPI 609 (667)
T ss_pred ccccCCeeEEecCCccc-hhHH-----HHHHHHhccc---cccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCc
Confidence 32210000011111000 0000 0111111110 0000001234568888976 68999999999999999998
Q ss_pred cEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1678 HLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1678 ~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
..+++++. |+.-..++|++||+.|.-..++-.++|+..-.
T Consensus 610 l~tLyldK-----------plk~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 610 LNTLYLDK-----------PLKYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred cceEEEec-----------cccccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 88887432 33334589999999995222333345555444
No 236
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.62 E-value=8.7e-14 Score=184.02 Aligned_cols=126 Identities=20% Similarity=0.222 Sum_probs=101.7
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
.....+......+.++||||+|++.++.++..|.. .+..+.++|+
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~-----------------------------------~gi~~~~lh~ 474 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKE-----------------------------------LGIKVRYLHS 474 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhh-----------------------------------hccceeeeeC
Confidence 34445555556788999999999999999866632 2345788999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
+++..+|..+++.|+.|.+.|||||+.+++|+|+|.+.+|| .++.. ....|-+..+|+||+|||||. ..|.|
T Consensus 475 ~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVv----i~Dad-ifG~p~~~~~~iqriGRagR~---~~G~v 546 (655)
T TIGR00631 475 EIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDAD-KEGFLRSERSLIQTIGRAARN---VNGKV 546 (655)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEE----EeCcc-cccCCCCHHHHHHHhcCCCCC---CCCEE
Confidence 99999999999999999999999999999999999998776 23322 233566889999999999995 47999
Q ss_pred EEEecCChH
Q 000114 1722 VILCHAPRK 1730 (2158)
Q Consensus 1722 iil~~~~~~ 1730 (2158)
++++.....
T Consensus 547 i~~~~~~~~ 555 (655)
T TIGR00631 547 IMYADKITD 555 (655)
T ss_pred EEEEcCCCH
Confidence 998887553
No 237
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.60 E-value=4e-14 Score=179.54 Aligned_cols=311 Identities=16% Similarity=0.158 Sum_probs=181.8
Q ss_pred CCCCHHHHHHHHHHh----cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1340 KHFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~----~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
..++.+|..|+..+. ++...+|+++.||+|||..| ++++..+.+....+ |+++++-+++|+.|.+..+. .|-
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~K--RVLFLaDR~~Lv~QA~~af~-~~~ 239 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVK--RVLFLADRNALVDQAYGAFE-DFL 239 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhh--eeeEEechHHHHHHHHHHHH-HhC
Confidence 478999999998864 35666999999999999999 55555555544455 99999999999999999888 444
Q ss_pred CCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhh---hccccccceeEEEecccccccCCCCChHHHHHHHHH
Q 000114 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW---KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~---~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~ 1492 (2158)
.. +-.+..+++... ...++|.|+|...+......- ..+.....++||||||||+=.-. -+..+ +-
T Consensus 240 P~-~~~~n~i~~~~~-----~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~---~~~~I---~d 307 (875)
T COG4096 240 PF-GTKMNKIEDKKG-----DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS---EWSSI---LD 307 (875)
T ss_pred CC-ccceeeeecccC-----CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh---hhHHH---HH
Confidence 33 344444443221 125699999999876654432 11224556999999999953211 11122 22
Q ss_pred HHHhhcCCCceEEEeccCCCChHHH--HHHh-ccCCCce----------EecCCCCcccccEEEEecccccchHHH----
Q 000114 1493 YIASQVENKIRIVALSTSLANAKDL--GEWI-GATSHGL----------FNFPPGVRPVPLEIHIQGVDITNFEAR---- 1555 (2158)
Q Consensus 1493 ~i~~~~~~~~riV~lSATl~n~~dl--~~wl-~~~~~~i----------~~f~~~~rpv~l~~~i~~~~~~~~~~~---- 1555 (2158)
++ +...++++||+.+..+. -.++ |.+ ... |..++..-.+++.....|........+
T Consensus 308 YF------dA~~~gLTATP~~~~d~~T~~~F~g~P-t~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~ 380 (875)
T COG4096 308 YF------DAATQGLTATPKETIDRSTYGFFNGEP-TYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQ 380 (875)
T ss_pred HH------HHHHHhhccCcccccccccccccCCCc-ceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhh
Confidence 33 22346779998764332 2334 222 111 111211112222222222222111000
Q ss_pred ------------------H---HhcChHHHHHHHHhHhc------CCCEEEEecChHHHHHHHHHHHhhcccCCcccccc
Q 000114 1556 ------------------M---QAMTKPTFTAIVQHAKN------EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2158)
Q Consensus 1556 ------------------~---~~~~k~~~~~i~~~~~~------~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~ 1608 (2158)
. ..-...+...+..++.+ -+++||||.+..+|+.+...|.......
T Consensus 381 g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~------- 453 (875)
T COG4096 381 GEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY------- 453 (875)
T ss_pred ccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc-------
Confidence 0 00011122222233333 3579999999999999998875432210
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHH-cCCceEEEecCccccccCCCccEEEEeccee
Q 000114 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE-AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQY 1687 (2158)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~-~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~ 1687 (2158)
-+.=+..+.+.- ...+..+-.-+. +.--+|.|+.+.+..|||+|.+..+|..
T Consensus 454 -----------------------~~~~a~~IT~d~-~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~--- 506 (875)
T COG4096 454 -----------------------NGRYAMKITGDA-EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFD--- 506 (875)
T ss_pred -----------------------cCceEEEEeccc-hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeeh---
Confidence 011133444433 333344433333 3446899999999999999977766611
Q ss_pred ecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1688 YDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1688 yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
- .-.|.+.|.||+||+-|.-
T Consensus 507 --r-----~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 507 --R-----KVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred --h-----hhhhHHHHHHHhcCccccC
Confidence 1 1237899999999999953
No 238
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=2.9e-14 Score=169.68 Aligned_cols=347 Identities=12% Similarity=0.040 Sum_probs=226.9
Q ss_pred hhhHhhcCCC--CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 484 EWAQPAFKGM--TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 484 ~~~~~~f~g~--~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
+.+...+.|. +.+..+|.+++..+-+| +|+++.-.|.|||.+|+.++....+..... ...+|+.||++
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G-~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~---------s~~~~~~~~~~ 342 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEG-RADGGNEARQAGKGTCPTSGSRKFQTLCHA---------TNSLLPSEMVE 342 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhc-ccccccchhhcCCccCcccchhhhhhcCcc---------cceecchhHHH
Confidence 3345555454 46788999999986555 679999999999999999988877665432 25799999999
Q ss_pred HHHHHHHHHHhhcccC----CcEEEEEeCCCccCHhh--hccccEEEcchhHH--HHHHhccCCCccccccceEEeeccc
Q 000114 562 LVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQQ--IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 562 La~q~~~~~~~~~~~~----gi~v~~l~Gd~~~~~~~--~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
+++...+.+.-.+... +.-|....|+...++.. ..+.+++++.|... ..+.+......++-...++++||+|
T Consensus 343 ~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~ 422 (1034)
T KOG4150|consen 343 HLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCA 422 (1034)
T ss_pred HhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhccccee
Confidence 9987765443322211 12234445555444433 45789999999875 3333333334555667899999999
Q ss_pred ccccCChhhHHHHHHHHHHHHhh--ccccccEEEEccccCChHHHHHHH-hccccCceEEecCCcccccceeEEEeec--
Q 000114 634 LLHDNRGPVLESIVARTVRQIET--TKEHIRLVGLSATLPNYEDVALFL-RVNLEKGLFYFDNSYRPVPLSQQYIGIQ-- 708 (2158)
Q Consensus 634 ~l~d~rg~~le~iv~r~~~~~~~--~~~~~riv~lSATlpn~~dv~~~l-~~~~~~~~~~f~~~~rpv~l~~~~~~~~-- 708 (2158)
.+...+|......+.++.+.... ...+.+++-.|||+.+......-+ +.+ ...+...+++ |..-. +++...
T Consensus 423 ~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~-E~~Li~~DGS--Ps~~K-~~V~WNP~ 498 (1034)
T KOG4150|consen 423 LYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLS-ELELVTIDGS--PSSEK-LFVLWNPS 498 (1034)
T ss_pred eeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCc-ceEEEEecCC--CCccc-eEEEeCCC
Confidence 99877887777777776655432 245789999999987654433322 222 2223333332 22111 111111
Q ss_pred -----cCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhc
Q 000114 709 -----VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (2158)
Q Consensus 709 -----~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 783 (2158)
..+..........++.+.+. .+-++|-||.+|+-|+-+....++...+...
T Consensus 499 ~~P~~~~~~~~~i~E~s~~~~~~i~---~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~--------------------- 554 (1034)
T KOG4150|consen 499 APPTSKSEKSSKVVEVSHLFAEMVQ---HGLRCIAFCPSRKLCELVLCLTREILAETAP--------------------- 554 (1034)
T ss_pred CCCcchhhhhhHHHHHHHHHHHHHH---cCCcEEEeccHHHHHHHHHHHHHHHHHHhhH---------------------
Confidence 11111222222333333332 2568999999999998877766654332211
Q ss_pred cCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHH
Q 000114 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (2158)
Q Consensus 784 ~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~ 863 (2158)
.|.+ .|.-+.||-+.+||+.++...-.|++.-+|||++|+-|||+...+.|++...|| |.+.
T Consensus 555 ----~LV~----~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~----------S~aN 616 (1034)
T KOG4150|consen 555 ----HLVE----AITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPG----------SIAN 616 (1034)
T ss_pred ----HHHH----HHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCch----------hHHH
Confidence 1111 122347999999999999999999999999999999999999999999854443 7889
Q ss_pred HHHhhcccCCCCCCCccEEEEEcCC
Q 000114 864 IMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
+.|.+|||||...+ ..++.+...
T Consensus 617 l~QQ~GRAGRRNk~--SLavyva~~ 639 (1034)
T KOG4150|consen 617 LWQQAGRAGRRNKP--SLAVYVAFL 639 (1034)
T ss_pred HHHHhccccccCCC--ceEEEEEec
Confidence 99999999997744 555555443
No 239
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.59 E-value=2e-14 Score=172.85 Aligned_cols=289 Identities=21% Similarity=0.264 Sum_probs=186.6
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-cccC
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-LLEK 1438 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~-~l~~ 1438 (2158)
++-+|||.||||--| ++++.. .+ +.||--|.|-||.++++++.+ .|+.+..+||+...... .-..
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~---ak--sGvycGPLrLLA~EV~~r~na-----~gipCdL~TGeE~~~~~~~~~~ 259 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKS---AK--SGVYCGPLRLLAHEVYDRLNA-----LGIPCDLLTGEERRFVLDNGNP 259 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhh---hc--cceecchHHHHHHHHHHHhhh-----cCCCccccccceeeecCCCCCc
Confidence 667899999999655 566655 33 679999999999999998873 38899999997654321 1224
Q ss_pred CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHH
Q 000114 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517 (2158)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl 1517 (2158)
++.+=||-|+.. .-..+++.||||++++.+ .||..|-..+--+. ...+.+.|=-|-++=.+++
T Consensus 260 a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------AdEiHLCGepsvldlV~~i 323 (700)
T KOG0953|consen 260 AQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------ADEIHLCGEPSVLDLVRKI 323 (700)
T ss_pred ccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh------hhhhhccCCchHHHHHHHH
Confidence 578888877532 124578999999999988 57877654432221 1233333322222212333
Q ss_pred HHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhh
Q 000114 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTY 1597 (2158)
Q Consensus 1518 ~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~ 1597 (2158)
.+-.|... ....-.|-.|+.+. ......+. .+.++. ++ .|-|++..-.+...+
T Consensus 324 ~k~TGd~v----ev~~YeRl~pL~v~-----------------~~~~~sl~-nlk~GD-Cv-V~FSkk~I~~~k~kI--- 376 (700)
T KOG0953|consen 324 LKMTGDDV----EVREYERLSPLVVE-----------------ETALGSLS-NLKPGD-CV-VAFSKKDIFTVKKKI--- 376 (700)
T ss_pred HhhcCCee----EEEeecccCcceeh-----------------hhhhhhhc-cCCCCC-eE-EEeehhhHHHHHHHH---
Confidence 33222221 11111122222111 11111121 113333 33 344666554444333
Q ss_pred cccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc--CCceEEEecCccccccCC
Q 000114 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA--GKIKVCVMSSSMCWGVPL 1675 (2158)
Q Consensus 1598 ~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~--g~i~VLVaT~~la~Gvdl 1675 (2158)
.....+.+++++|+|+++.|..--.+|.+ +..+|||||+++++|+|+
T Consensus 377 -------------------------------E~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL 425 (700)
T KOG0953|consen 377 -------------------------------EKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL 425 (700)
T ss_pred -------------------------------HHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc
Confidence 22234558999999999999999999987 899999999999999999
Q ss_pred CccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCC-CceEEEEEecCChHHHHHHHhhC
Q 000114 1676 TAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHAPRKEYYKKFLYD 1739 (2158)
Q Consensus 1676 p~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d-~~G~~iil~~~~~~~~~~k~l~~ 1739 (2158)
.-.++|..+...|+|++ ..+++..+..|.+|||||.|.. ..|.+..|..+ +-..+++.|+.
T Consensus 426 ~IrRiiF~sl~Kysg~e--~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e-DL~~L~~~l~~ 487 (700)
T KOG0953|consen 426 NIRRIIFYSLIKYSGRE--TEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE-DLKLLKRILKR 487 (700)
T ss_pred ceeEEEEeecccCCccc--ceeccHHHHHHHhhcccccccCCcCceEEEeeHh-hHHHHHHHHhC
Confidence 99999998889999875 5788999999999999997632 34666555443 34556666653
No 240
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.59 E-value=1.3e-13 Score=186.98 Aligned_cols=324 Identities=18% Similarity=0.216 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+|.++|.+.+..++. .+.+.|++-..|.|||+.++..+ ..+..... ....+|||+|. +|+.++.+.|.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~-------~~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRG-------ITGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcC-------CCCCEEEEeCh-HHHHHHHHHHH
Confidence 789999999987653 45578999999999999875444 33332211 12258999995 77889999998
Q ss_pred hhcccCCcEEEEEeCCCccCHhh------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~ 645 (2158)
+++. .+++..++|+....... ....+|+|+|.+.+. +.... ..--..++|||||||.+-....
T Consensus 240 kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~---~e~~~-L~k~~W~~VIvDEAHrIKN~~S----- 308 (1033)
T PLN03142 240 RFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAI---KEKTA-LKRFSWRYIIIDEAHRIKNENS----- 308 (1033)
T ss_pred HHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHH---HHHHH-hccCCCCEEEEcCccccCCHHH-----
Confidence 8764 46788888865422111 235789999999752 11100 1112358999999999864322
Q ss_pred HHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCceEE----e------cC-------------Cccc---
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFY----F------DN-------------SYRP--- 697 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlp--n~~dv~~~l~~~~~~~~~~----f------~~-------------~~rp--- 697 (2158)
..++.++.+ . ....++||+|+- +..++...+..-.+ +.|. | .. -.+|
T Consensus 309 klskalr~L---~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P-~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~L 383 (1033)
T PLN03142 309 LLSKTMRLF---S-TNYRLLITGTPLQNNLHELWALLNFLLP-EIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLL 383 (1033)
T ss_pred HHHHHHHHh---h-cCcEEEEecCCCCCCHHHHHHHHhcCCC-CcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHh
Confidence 122222222 2 234588999942 34444443332110 0000 0 00 0000
Q ss_pred ----------cc-ceeEEEeeccCChhHH-HHH------------------hh------HHH------------------
Q 000114 698 ----------VP-LSQQYIGIQVKKPLQR-FQL------------------MN------DLC------------------ 723 (2158)
Q Consensus 698 ----------v~-l~~~~~~~~~~~~~~~-~~~------------------l~------~~~------------------ 723 (2158)
.| .....+.+........ +.. ++ ..|
T Consensus 384 RR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~ 463 (1033)
T PLN03142 384 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG 463 (1033)
T ss_pred hhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccch
Confidence 01 1111111111100000 000 00 000
Q ss_pred ------------HHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchh
Q 000114 724 ------------YEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2158)
Q Consensus 724 ------------~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (2158)
...++... .+.++|||+........+...|...
T Consensus 464 e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~--------------------------------- 510 (1033)
T PLN03142 464 EHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYR--------------------------------- 510 (1033)
T ss_pred hHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHc---------------------------------
Confidence 00011111 1345666665544333333333221
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHhCC---CceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHH
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDG---HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g---~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Q 866 (2158)
.+++..+||+++..+|..+++.|.+. ..-+|+||.+.+.||||...++||.++.+|+|. ...|
T Consensus 511 ----g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~----------~d~Q 576 (1033)
T PLN03142 511 ----GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQ----------VDLQ 576 (1033)
T ss_pred ----CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChH----------HHHH
Confidence 24456679999999999999999753 346789999999999999999999977666654 6999
Q ss_pred hhcccCCCCCCCccEEEEEcCCCc
Q 000114 867 MLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
++|||-|.|....-.+|.++..+.
T Consensus 577 AidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 577 AQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred HHHHhhhcCCCceEEEEEEEeCCc
Confidence 999999999766555666666654
No 241
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=1.8e-14 Score=173.30 Aligned_cols=289 Identities=22% Similarity=0.315 Sum_probs=190.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~ 593 (2158)
++=+|||.||||.-| |+.+.... +.+|--|.|-||.|++++++.. |+.+..+||.......
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~ak-----------sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKSAK-----------SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVL 254 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhhhc-----------cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecC
Confidence 667899999999765 45555432 5799999999999999998875 8899999997543322
Q ss_pred h-hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 594 Q-IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 594 ~-~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
. -..++.+-||-|... .-..+++.||||+++|.| .||..+-..+--+ ....+.+.|=-|-++
T Consensus 255 ~~~~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl------~AdEiHLCGepsvld 318 (700)
T KOG0953|consen 255 DNGNPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGL------AADEIHLCGEPSVLD 318 (700)
T ss_pred CCCCcccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhh------hhhhhhccCCchHHH
Confidence 1 234678888888522 223478999999999999 6998887554433 223455555434433
Q ss_pred ChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHH
Q 000114 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTAR 751 (2158)
Q Consensus 672 n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~ 751 (2158)
-|...+...... +....-.|-.|+... +.....+ .....+.++ .|-||++...+..
T Consensus 319 ---lV~~i~k~TGd~--vev~~YeRl~pL~v~-----------------~~~~~sl-~nlk~GDCv-V~FSkk~I~~~k~ 374 (700)
T KOG0953|consen 319 ---LVRKILKMTGDD--VEVREYERLSPLVVE-----------------ETALGSL-SNLKPGDCV-VAFSKKDIFTVKK 374 (700)
T ss_pred ---HHHHHHhhcCCe--eEEEeecccCcceeh-----------------hhhhhhh-ccCCCCCeE-EEeehhhHHHHHH
Confidence 233333222111 111111122222210 0111112 122344443 3457788877777
Q ss_pred HHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhC--CCceEEEechh
Q 000114 752 AIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD--GHVQVLVSTAT 829 (2158)
Q Consensus 752 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~--g~i~VLVaT~t 829 (2158)
.+...+. ..+++.+|+|+++.|..--.+|.+ +..+|||||++
T Consensus 375 kIE~~g~------------------------------------~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDA 418 (700)
T KOG0953|consen 375 KIEKAGN------------------------------------HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDA 418 (700)
T ss_pred HHHHhcC------------------------------------cceEEEecCCCCchhHHHHHHhCCCCCccceEEeecc
Confidence 7766542 236778999999999999999987 99999999999
Q ss_pred hhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEc-CCCcHHHHHHhhcC
Q 000114 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYLSLMNQ 900 (2158)
Q Consensus 830 la~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~-~~~~~~~y~~ll~~ 900 (2158)
.++|+|+.-.++|+..-..|+... ..+++..+..|.+|||||-|-. ...+++-+ ...++..+.+.+..
T Consensus 419 IGMGLNL~IrRiiF~sl~Kysg~e--~~~it~sqikQIAGRAGRf~s~-~~~G~vTtl~~eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 419 IGMGLNLNIRRIIFYSLIKYSGRE--TEDITVSQIKQIAGRAGRFGSK-YPQGEVTTLHSEDLKLLKRILKR 487 (700)
T ss_pred cccccccceeEEEEeecccCCccc--ceeccHHHHHHHhhcccccccC-CcCceEEEeeHhhHHHHHHHHhC
Confidence 999999988888887667777543 6889999999999999997532 23333333 33556666665553
No 242
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.56 E-value=4e-13 Score=182.22 Aligned_cols=323 Identities=16% Similarity=0.204 Sum_probs=184.9
Q ss_pred CCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
.+.|+|.+.+.-++ ..+.+.|++-..|.|||+.+ ++++..+... ...+ .+|||+|. +++.++.+.+. +|..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~~~~g--p~LIVvP~-SlL~nW~~Ei~-kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYRGITG--PHMVVAPK-STLGNWMNEIR-RFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhcCCCC--CEEEEeCh-HHHHHHHHHHH-HHCC
Confidence 68899999998764 35667999999999999987 4444444331 2233 68999996 77788888887 4443
Q ss_pred CCCcEEEEEcCCcchhhh------cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHH
Q 000114 1417 GLGMRVVELTGETAMDLK------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~~------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isr 1490 (2158)
..++..++|....... .....+|+|+|.+.+...... ..--..++||+||||.+-.... ..++
T Consensus 244 --~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~----L~k~~W~~VIvDEAHrIKN~~S-----klsk 312 (1033)
T PLN03142 244 --VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA----LKRFSWRYIIIDEAHRIKNENS-----LLSK 312 (1033)
T ss_pred --CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH----hccCCCCEEEEcCccccCCHHH-----HHHH
Confidence 4678888886543211 123458999999876432211 1112468999999999965331 1121
Q ss_pred HHHHHhhcCCCceEEEeccCCCC--hHHH------------------HHHhccCCCc--------eEe-cCC--------
Q 000114 1491 MRYIASQVENKIRIVALSTSLAN--AKDL------------------GEWIGATSHG--------LFN-FPP-------- 1533 (2158)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n--~~dl------------------~~wl~~~~~~--------i~~-f~~-------- 1533 (2158)
....+... ..++||+|+-. ..++ ..|+...... +.. ..|
T Consensus 313 ---alr~L~a~-~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ks 388 (1033)
T PLN03142 313 ---TMRLFSTN-YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKS 388 (1033)
T ss_pred ---HHHHhhcC-cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHH
Confidence 11122333 34788888632 3333 2232211000 000 000
Q ss_pred C---CcccccEEEEecccccchHHH-----HH----hc----Ch-HHHHHHH----------------------------
Q 000114 1534 G---VRPVPLEIHIQGVDITNFEAR-----MQ----AM----TK-PTFTAIV---------------------------- 1568 (2158)
Q Consensus 1534 ~---~rpv~l~~~i~~~~~~~~~~~-----~~----~~----~k-~~~~~i~---------------------------- 1568 (2158)
. .-|...+ .+..+........ +. .+ .. .....+.
T Consensus 389 dV~~~LPpK~e-~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~li 467 (1033)
T PLN03142 389 DVEKGLPPKKE-TILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV 467 (1033)
T ss_pred HHhhhCCCcee-EEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHh
Confidence 0 0010111 1111111100000 00 00 00 0000000
Q ss_pred --------------HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1569 --------------QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1569 --------------~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
.....+.++|||+...... +.+.+. + ...++
T Consensus 468 e~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~L---------------------------------diLed~-L-~~~g~ 512 (1033)
T PLN03142 468 ENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLL---------------------------------DILEDY-L-MYRGY 512 (1033)
T ss_pred hhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHH---------------------------------HHHHHH-H-HHcCC
Confidence 0001222333333322211 112111 1 12356
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcC---CceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAG---KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g---~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaG 1711 (2158)
++..+||+++..+|..+++.|.+. ..-+|++|.+.+.|||+....+|| +++.+.++....|++|||.
T Consensus 513 ~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VI----------iyD~dWNP~~d~QAidRaH 582 (1033)
T PLN03142 513 QYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVI----------LYDSDWNPQVDLQAQDRAH 582 (1033)
T ss_pred cEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEE----------EeCCCCChHHHHHHHHHhh
Confidence 788999999999999999999753 346799999999999999888887 4567788999999999999
Q ss_pred CCCCCCceEEEEEecCCh
Q 000114 1712 RPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1712 R~g~d~~G~~iil~~~~~ 1729 (2158)
|.|..+.-.++.|+....
T Consensus 583 RIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 583 RIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred hcCCCceEEEEEEEeCCc
Confidence 999777666776766653
No 243
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.56 E-value=7.5e-13 Score=180.25 Aligned_cols=83 Identities=20% Similarity=0.333 Sum_probs=63.7
Q ss_pred CCCCCCCHHHHH---HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 491 KGMTQLNRVQSR---VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 491 ~g~~~l~~iQ~~---~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
+|| +.++-|.+ ++..++.++..+++.|+||+|||++|++|++... .+.++|+++||++|++|+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQIM 308 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHHH
Confidence 566 68999999 5555677778899999999999999999988753 1247999999999999995
Q ss_pred -HHHHhhcccCCcEEEEEeC
Q 000114 568 -GNLSNRLQMYDVKVRELSG 586 (2158)
Q Consensus 568 -~~~~~~~~~~gi~v~~l~G 586 (2158)
+.+..+.+.+++++..+.|
T Consensus 309 ~~~i~~l~~~~~~~~~~~kg 328 (820)
T PRK07246 309 AEEVKAIQEVFHIDCHSLKG 328 (820)
T ss_pred HHHHHHHHHhcCCcEEEEEC
Confidence 5555544445666655444
No 244
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.55 E-value=3.9e-14 Score=186.55 Aligned_cols=329 Identities=15% Similarity=0.061 Sum_probs=196.6
Q ss_pred ccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---
Q 000114 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--- 594 (2158)
Q Consensus 518 APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~--- 594 (2158)
+.+|||||.+|+-.+-..+..+ ..+|+++|..+|+.|+.+.|+++|+ +..|..++++.+..++.
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~G-----------k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRAG-----------RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHcC-----------CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH
Confidence 3369999999999888887754 2799999999999999999999885 24688899987765432
Q ss_pred ----hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc--ccCChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 595 ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL--HDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 595 ----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l--~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
.+...|+|+| ++.-+..+.++++|||||-|.- .+++++.+.. |-....+....++.+|+.||
T Consensus 234 ~~~~~G~~~IViGt---------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yha---RdvA~~Ra~~~~~~lvLgSa 301 (665)
T PRK14873 234 LAVLRGQARVVVGT---------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHA---REVALLRAHQHGCALLIGGH 301 (665)
T ss_pred HHHhCCCCcEEEEc---------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccH---HHHHHHHHHHcCCcEEEECC
Confidence 2467899999 4445577899999999999953 2345555432 21122233467899999999
Q ss_pred ccCChHHHHHHHhccccCceEEec---CCcccccceeEEEeeccC----ChhHHHHHhhHHHHHHHHHHhCCCeEEEEec
Q 000114 669 TLPNYEDVALFLRVNLEKGLFYFD---NSYRPVPLSQQYIGIQVK----KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (2158)
Q Consensus 669 Tlpn~~dv~~~l~~~~~~~~~~f~---~~~rpv~l~~~~~~~~~~----~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~ 741 (2158)
|. ..+ .|..+.... ..... ...+...-..++++.... +....-..+...+++.+.+....+|+|||+|
T Consensus 302 TP-Sle---s~~~~~~g~-~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~ln 376 (665)
T PRK14873 302 AR-TAE---AQALVESGW-AHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVP 376 (665)
T ss_pred CC-CHH---HHHHHhcCc-ceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEec
Confidence 94 433 333322111 11011 011111112233333210 0000001145566677777776559999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccc---------cCchhHHHHHhhhhccCc--------------chhhhhccCCeE
Q 000114 742 SRKETAKTARAIRDTALENDTLGRFLK---------EDSVSREILQSHTDMVKS--------------NDLKDLLPYGFA 798 (2158)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------~~l~~ll~~gv~ 798 (2158)
.|.-+..+...=|..-..+......+. ++..........+..|.. +.|..+++ ++
T Consensus 377 RrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP-~~- 454 (665)
T PRK14873 377 RRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFP-GV- 454 (665)
T ss_pred CCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCC-CC-
Confidence 998776655544443333222211111 111111101111222221 12333333 11
Q ss_pred EecCCCCHHHHHHHHHHHhCCCceEEEech----hhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCC
Q 000114 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2158)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~i~VLVaT~----tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2158)
..-+.++..+++.|. ++.+|||+|. .++-|+ ..-+|++.+...+.+..+..+-....++|-+|||||.
T Consensus 455 ----~V~r~d~d~~l~~~~-~~~~IlVGTqgaepm~~g~~---~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~ 526 (665)
T PRK14873 455 ----PVVTSGGDQVVDTVD-AGPALVVATPGAEPRVEGGY---GAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPR 526 (665)
T ss_pred ----CEEEEChHHHHHhhc-cCCCEEEECCCCcccccCCc---eEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCC
Confidence 122234556888997 5999999998 676222 3334666666666666677777888999999999995
Q ss_pred CCCCccEEEEEcCC
Q 000114 875 QYDSYGEGIIITGH 888 (2158)
Q Consensus 875 g~d~~G~~iil~~~ 888 (2158)
. ..|+++|.+..
T Consensus 527 ~--~~G~V~iq~~p 538 (665)
T PRK14873 527 A--DGGQVVVVAES 538 (665)
T ss_pred C--CCCEEEEEeCC
Confidence 4 66999998633
No 245
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.54 E-value=9.6e-13 Score=175.89 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=100.6
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
.....+......+.++||||+|++.|+.++..|.. .+..+.++||
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~-----------------------------------~gi~~~~~h~ 478 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKE-----------------------------------LGIKVRYLHS 478 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhh-----------------------------------cceeEEEEEC
Confidence 34445555556788999999999999999866632 2345789999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
+++..+|..+++.|+.|.+.|||||+.+++|+|+|.+.+|| .++.. ....|.+..+|+||+||+||. ..|.|
T Consensus 479 ~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVi----i~d~e-ifG~~~~~~~yiqr~GR~gR~---~~G~~ 550 (652)
T PRK05298 479 DIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVA----ILDAD-KEGFLRSERSLIQTIGRAARN---VNGKV 550 (652)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEE----EeCCc-ccccCCCHHHHHHHhccccCC---CCCEE
Confidence 99999999999999999999999999999999999988776 23322 233556889999999999994 58999
Q ss_pred EEEecCC
Q 000114 1722 VILCHAP 1728 (2158)
Q Consensus 1722 iil~~~~ 1728 (2158)
++++...
T Consensus 551 i~~~~~~ 557 (652)
T PRK05298 551 ILYADKI 557 (652)
T ss_pred EEEecCC
Confidence 9999854
No 246
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.54 E-value=9.6e-13 Score=174.23 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=96.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.+.++||||+|++.++.++..|.+.++. +.+.||+|+..+|..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~-------------------------------------~~~lh~~~~~~eR~~ 483 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIK-------------------------------------VRYLHSEIDTLERVE 483 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccc-------------------------------------eeeeeCCCCHHHHHH
Confidence 3679999999999999999999876532 456699999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
+++.|+.|.++|||||+.+++|+|+|++.+||. +|....+ .+-+..+|+||+|||||. ..|.++++++..+.
T Consensus 484 ~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi----~DadifG-~p~~~~~~iqriGRagR~---~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 484 IIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVIMYADKITD 555 (655)
T ss_pred HHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE----eCccccc-CCCCHHHHHHHhcCCCCC---CCCEEEEEEcCCCH
Confidence 999999999999999999999999999998887 4422110 112778999999999996 46999999887554
No 247
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.54 E-value=1.8e-12 Score=176.69 Aligned_cols=347 Identities=15% Similarity=0.195 Sum_probs=198.8
Q ss_pred CCCHHHHHH---HHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH-HHHHHHhcC
Q 000114 1341 HFNPIQTQV---FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY-RDWEIKFGQ 1416 (2158)
Q Consensus 1341 ~~~~iQ~q~---~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~-~~~~~~f~~ 1416 (2158)
++++.|.+. +...+..+..+++.|+||+|||++|++|++... .+. ++|+++||++|+.|+. +++. .+++
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~--~vvI~t~T~~Lq~Ql~~~~i~-~l~~ 317 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQR--QIIVSVPTKILQDQIMAEEVK-AIQE 317 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCC--cEEEEeCcHHHHHHHHHHHHH-HHHH
Confidence 689999984 444456778899999999999999999988643 123 8999999999999995 5555 5665
Q ss_pred CCCcEEEEEcCCcch------------------------------------h----------------------------
Q 000114 1417 GLGMRVVELTGETAM------------------------------------D---------------------------- 1432 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~------------------------------------~---------------------------- 1432 (2158)
..++++..+.|.... |
T Consensus 318 ~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp 397 (820)
T PRK07246 318 VFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSL 397 (820)
T ss_pred hcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCC
Confidence 556665544331100 0
Q ss_pred ----------hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC----CCCh--HHHHHH-------
Q 000114 1433 ----------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ----GGPV--LEVIVS------- 1489 (2158)
Q Consensus 1433 ----------~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~----~g~~--~e~~is------- 1489 (2158)
.+....++|||+.-.-+...+.. ...+...+.+||||||.+.+. .+.. +..+..
T Consensus 398 ~~~~cf~~~ar~~a~~AdivItNHall~~~~~~---~~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 398 FYDYDFWKRSYEKAKTARLLITNHAYFLTRVQD---DKDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred cchhhHHHHHHHHHHhCCEEEEchHHHHHHHhh---ccCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 00123458888887655443322 223567899999999988531 1111 000000
Q ss_pred ---------------------------------------H----HHHHH-----------hh------------------
Q 000114 1490 ---------------------------------------R----MRYIA-----------SQ------------------ 1497 (2158)
Q Consensus 1490 ---------------------------------------r----l~~i~-----------~~------------------ 1497 (2158)
+ +..+. ..
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 0 00000 00
Q ss_pred ---------------cCCCceEEEeccCCC--ChHHHHHHhccCCCceEecCCCCcccccEEEEe-cccccchHHHHHhc
Q 000114 1498 ---------------VENKIRIVALSTSLA--NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ-GVDITNFEARMQAM 1559 (2158)
Q Consensus 1498 ---------------~~~~~riV~lSATl~--n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~-~~~~~~~~~~~~~~ 1559 (2158)
++....+|++||||+ +.-++.+.+|............+.... .+.+. ..+....... ...
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~-~~~i~~~~p~~~~~~~-~~~ 632 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQ-LVVVDQDMPLVTETSD-EVY 632 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHcc-EEEeCCCCCCCCCCCh-HHH
Confidence 011246789999995 222477778865322222211111111 11111 1111110000 011
Q ss_pred ChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEe
Q 000114 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (2158)
Q Consensus 1560 ~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~ 1639 (2158)
.......+......+++++|+++|.+..+.++..|... ...+ +.
T Consensus 633 ~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~-----------------------------------~~~~-l~ 676 (820)
T PRK07246 633 AEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQW-----------------------------------QVSH-LA 676 (820)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhc-----------------------------------CCcE-EE
Confidence 11222222222245789999999999988887655210 1112 22
Q ss_pred cCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCC---ccEEEEecceeecCC---------------CCcCcCCC--
Q 000114 1640 HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT---AHLVVVMGTQYYDGQ---------------ENAHTDYP-- 1699 (2158)
Q Consensus 1640 H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp---~~~vVI~gt~~yd~~---------------~~~~~~~s-- 1699 (2158)
.|.-. .|..+.+.|+++.-.||++|..+..|||+| ...+||.+-++-.+. .+.+..|+
T Consensus 677 Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP 754 (820)
T PRK07246 677 QEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLP 754 (820)
T ss_pred eCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHH
Confidence 23111 245688899999899999999999999997 345667665544331 11222333
Q ss_pred --HHHHHHhhccCCCCCCCCceEEEEEecCC-hHHHHHHHhh
Q 000114 1700 --VTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFLY 1738 (2158)
Q Consensus 1700 --~~~~lQr~GRaGR~g~d~~G~~iil~~~~-~~~~~~k~l~ 1738 (2158)
+..+.|-+||.-|.. +..|.++++-..- .+.|-+.|+.
T Consensus 755 ~A~iklkQg~GRLIRs~-~D~Gvv~ilD~R~~~k~Yg~~~l~ 795 (820)
T PRK07246 755 MTILRLKQAIGRTMRRE-DQKSAVLILDRRILTKSYGKQILA 795 (820)
T ss_pred HHHHHHHHHhcccccCC-CCcEEEEEECCcccccHHHHHHHH
Confidence 566889999999976 5678766665443 3444455554
No 248
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=8e-13 Score=173.20 Aligned_cols=133 Identities=20% Similarity=0.216 Sum_probs=99.4
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH
Q 000114 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2158)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~ 810 (2158)
..+.|+||||+|+..++.++..|...++... .+|+ .+.+|+
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~-------------------------------------vLna--kq~~RE 636 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAKRIAHN-------------------------------------VLNA--KQHDRE 636 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCce-------------------------------------eecC--CHHHhH
Confidence 3478999999999999999999998765433 3376 578999
Q ss_pred HHHHHHhCCCceEEEechhhhhccCCC---ceE-----EEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEE
Q 000114 811 LVEDLFGDGHVQVLVSTATLAWGVNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2158)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVdlP---~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2158)
..+..|+.+...|+|||++++||+|++ .|. +||. +..+. |...|.|++|||||.| ..|.+
T Consensus 637 a~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg----terhe------s~Rid~Ql~GRtGRqG--dpGsS 704 (1025)
T PRK12900 637 AEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG----SERHE------SRRIDRQLRGRAGRQG--DPGES 704 (1025)
T ss_pred HHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC----CCCCc------hHHHHHHHhhhhhcCC--CCcce
Confidence 999999999999999999999999999 442 3465 22222 5667999999999987 77999
Q ss_pred EEEcCCCcHH-------HHHHhh-----cCCCcccchhhHhhHH
Q 000114 883 IIITGHSELR-------YYLSLM-----NQQLPIESQFVSKLAD 914 (2158)
Q Consensus 883 iil~~~~~~~-------~y~~ll-----~~~~pieS~l~~~l~d 914 (2158)
+.+++..+.- .+.+++ ....||++.+..+..+
T Consensus 705 ~ffvSleD~Lmr~f~~~~i~~~~~~~~~~e~e~I~~~~i~k~ie 748 (1025)
T PRK12900 705 VFYVSLEDELMRLFGSDRVISVMDRLGHEEGDVIEHSMITKSIE 748 (1025)
T ss_pred EEEechhHHHHHhhCcHHHHHHHHHcCCCCCCcccchHHHHHHH
Confidence 9998875421 122222 2345677776655444
No 249
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.52 E-value=5.2e-12 Score=175.45 Aligned_cols=135 Identities=20% Similarity=0.338 Sum_probs=94.0
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
++++|||++|.+..+.++..|....... ++.+.--|++...|..+
T Consensus 752 ~g~~LVLFtSy~~l~~v~~~l~~~~~~~-----------------------------------~~~ll~Qg~~~~~r~~l 796 (928)
T PRK08074 752 KGRMLVLFTSYEMLKKTYYNLKNEEELE-----------------------------------GYVLLAQGVSSGSRARL 796 (928)
T ss_pred CCCEEEEECCHHHHHHHHHHHhhccccc-----------------------------------CceEEecCCCCCCHHHH
Confidence 6789999999999999998887532110 11111224444568889
Q ss_pred HHHHhCCCceEEEechhhhhccCCCce--EEEEecccccCCCCC----------------ccccC----CHHHHHHhhcc
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAH--TVIIKGTQIYNPEKG----------------AWTEL----SPLDIMQMLGR 870 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v--~vVI~~~~~yd~~~g----------------~~~~~----s~~~~~Qr~GR 870 (2158)
.+.|+.+.-.||++|..+..|||+|+- ..||-...||.++.. .|.++ ....+.|-+||
T Consensus 797 ~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GR 876 (928)
T PRK08074 797 TKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGR 876 (928)
T ss_pred HHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhh
Confidence 999999988999999999999999985 556666778865542 23343 35677999999
Q ss_pred cCCCCCCCccEEEEEcCCCcHHHHHHhhcCCCc
Q 000114 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (2158)
.=|...| .|..+++-..-....|-+.+-..+|
T Consensus 877 lIRs~~D-~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 877 LIRTETD-RGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred hcccCCc-eEEEEEecCccccchHHHHHHHhCC
Confidence 9997644 6776666555444556554444445
No 250
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.51 E-value=3.6e-13 Score=154.68 Aligned_cols=169 Identities=22% Similarity=0.284 Sum_probs=123.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
++..++++|.+++..++++..++++++|||+|||.++..++++.+... ... +++|++|+++++.|..+.+...+...
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-~~~--~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-KGK--RVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-CCC--cEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 367899999999999987636799999999999999999999888762 233 89999999999999999998655432
Q ss_pred CCcEEEEEcCCcch-hhh-cccCC-cEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHH
Q 000114 1418 LGMRVVELTGETAM-DLK-LLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~-~~~-~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~ 1493 (2158)
.+.....+.+.... ... ..... +++++|++.+........ .....++++|+||+|.+.. ... ..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~-------~~~~~ 152 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFG-------DQLEK 152 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcH-------HHHHH
Confidence 22455555554422 222 22334 999999999888776633 3567889999999999975 222 22223
Q ss_pred HHhhcCCCceEEEeccCCCChHHHH
Q 000114 1494 IASQVENKIRIVALSTSLANAKDLG 1518 (2158)
Q Consensus 1494 i~~~~~~~~riV~lSATl~n~~dl~ 1518 (2158)
+........+++++|||+++..+..
T Consensus 153 ~~~~~~~~~~~v~~saT~~~~~~~~ 177 (201)
T smart00487 153 LLKLLPKNVQLLLLSATPPEEIENL 177 (201)
T ss_pred HHHhCCccceEEEEecCCchhHHHH
Confidence 3333356889999999998644333
No 251
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.50 E-value=2.8e-13 Score=155.59 Aligned_cols=164 Identities=27% Similarity=0.355 Sum_probs=121.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
++.+++++|.+++..++....++++++|||+|||.++..++++.+.... ..+++|++|+++++.|+...+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHHHH
Confidence 5678999999999998876467999999999999999999998876542 2479999999999999999999
Q ss_pred hhcccCC-cEEEEEeCCCccCH--hhhccc-cEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHH
Q 000114 572 NRLQMYD-VKVRELSGDQTLTR--QQIEET-QIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (2158)
Q Consensus 572 ~~~~~~g-i~v~~l~Gd~~~~~--~~~~~~-~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~i 646 (2158)
..+.... .....+.|...... ...... +++++|++.+........ .....++++|+||+|.+.. .+...+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 8776544 34444544432111 112233 999999998754444432 3456789999999999876 555555544
Q ss_pred HHHHHHHHhhccccccEEEEccccCCh
Q 000114 647 VARTVRQIETTKEHIRLVGLSATLPNY 673 (2158)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATlpn~ 673 (2158)
+..+ ....+++++|||+++.
T Consensus 154 ~~~~-------~~~~~~v~~saT~~~~ 173 (201)
T smart00487 154 LKLL-------PKNVQLLLLSATPPEE 173 (201)
T ss_pred HHhC-------CccceEEEEecCCchh
Confidence 4322 5678999999998743
No 252
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.49 E-value=3.2e-12 Score=153.98 Aligned_cols=170 Identities=22% Similarity=0.302 Sum_probs=120.0
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHH-HhCCCeEEE
Q 000114 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLI 738 (2158)
Q Consensus 660 ~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~-~~~~~~vLV 738 (2158)
..|+|..|||..+++ +..- +-.+...-.||.-+---.+.+.... .+.. ++ +..+.. ...+.+++|
T Consensus 386 ~~q~i~VSATPg~~E-~e~s-------~~~vveQiIRPTGLlDP~ievRp~~--~Qvd---DL-~~EI~~r~~~~eRvLV 451 (663)
T COG0556 386 IPQTIYVSATPGDYE-LEQS-------GGNVVEQIIRPTGLLDPEIEVRPTK--GQVD---DL-LSEIRKRVAKNERVLV 451 (663)
T ss_pred cCCEEEEECCCChHH-HHhc-------cCceeEEeecCCCCCCCceeeecCC--CcHH---HH-HHHHHHHHhcCCeEEE
Confidence 569999999976543 2111 1112233445654433333232221 1222 22 223333 334789999
Q ss_pred EecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhC
Q 000114 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818 (2158)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~ 818 (2158)
-+-|++-|+.+..+|.+.|.. +.+.|++...-+|..++..++.
T Consensus 452 TtLTKkmAEdLT~Yl~e~gik-------------------------------------v~YlHSdidTlER~eIirdLR~ 494 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIK-------------------------------------VRYLHSDIDTLERVEIIRDLRL 494 (663)
T ss_pred EeehHHHHHHHHHHHHhcCce-------------------------------------EEeeeccchHHHHHHHHHHHhc
Confidence 999999999999999987643 6778999999999999999999
Q ss_pred CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
|.++|||.-+.|-.|+|+|.|.+|.- .|..+-++ --|-.+++|-+|||.|. -.|++|+....
T Consensus 495 G~~DvLVGINLLREGLDiPEVsLVAI----lDADKeGF-LRse~SLIQtIGRAARN---~~GkvIlYAD~ 556 (663)
T COG0556 495 GEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARN---VNGKVILYADK 556 (663)
T ss_pred CCccEEEeehhhhccCCCcceeEEEE----eecCcccc-ccccchHHHHHHHHhhc---cCCeEEEEchh
Confidence 99999999999999999999998765 55443221 12777899999999995 46999888765
No 253
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.48 E-value=2.1e-12 Score=165.83 Aligned_cols=281 Identities=21% Similarity=0.264 Sum_probs=172.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
|+ .|...|+-....++.+.. .-+.||||.|||.-.++..+-...+ +.+++||+||..|+.|.++++.
T Consensus 80 G~-~~ws~QR~WakR~~rg~S-FaiiAPTGvGKTTfg~~~sl~~a~k-----------gkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKS-FAIIAPTGVGKTTFGLLMSLYLAKK-----------GKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCc-eEEEcCCCCchhHHHHHHHHHHHhc-----------CCeEEEEecCHHHHHHHHHHHH
Confidence 44 899999999999888755 9999999999997666555544333 3489999999999999999999
Q ss_pred hhcccCC-cEEEE-EeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CC--
Q 000114 572 NRLQMYD-VKVRE-LSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NR-- 639 (2158)
Q Consensus 572 ~~~~~~g-i~v~~-l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~r-- 639 (2158)
++....| ..+.. ++|......+. ..+.+|+|+|.. .+.++...... -++++|++|.+|.++- .+
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~---FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ---FLSKRFEELSK-LKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH---HHHhhHHHhcc-cCCCEEEEccHHHHHhccccH
Confidence 8775444 33322 66665443321 247899999987 33333321111 3579999999996642 11
Q ss_pred ----------hhhHHHH--HHHHHHHHh---------------------hccccccEEEEccccCChHH----HHHHHhc
Q 000114 640 ----------GPVLESI--VARTVRQIE---------------------TTKEHIRLVGLSATLPNYED----VALFLRV 682 (2158)
Q Consensus 640 ----------g~~le~i--v~r~~~~~~---------------------~~~~~~riv~lSATlpn~~d----v~~~l~~ 682 (2158)
...++.. +.++.+... .....-++|..|||.....+ +...++.
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF 302 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF 302 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC
Confidence 1111100 011111100 11234678999999764332 2333333
Q ss_pred cccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecC---hHHHHHHHHHHHHHhhc
Q 000114 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS---RKETAKTARAIRDTALE 759 (2158)
Q Consensus 683 ~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~s---r~~~~~~a~~L~~~~~~ 759 (2158)
. .......+...+-.........+ +.+ +.+.. +...||||+. +..++.+++.|+..|++
T Consensus 303 e---------vG~~~~~LRNIvD~y~~~~~~e~-------~~e-lvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~ 364 (1187)
T COG1110 303 E---------VGSGGEGLRNIVDIYVESESLEK-------VVE-LVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGIN 364 (1187)
T ss_pred c---------cCccchhhhheeeeeccCccHHH-------HHH-HHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCce
Confidence 2 22111222211111111111111 111 22222 4568999999 88899999999988765
Q ss_pred ccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEech----hhhhccC
Q 000114 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVN 835 (2158)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~----tla~GVd 835 (2158)
.. ..|++ +...++.|..|+++|||+.+ ++.||+|
T Consensus 365 a~-------------------------------------~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlD 402 (1187)
T COG1110 365 AE-------------------------------------LIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLD 402 (1187)
T ss_pred EE-------------------------------------Eeecc-----chhhhhhhccCceeEEEEecccccceeecCC
Confidence 43 23552 36788999999999999864 7999999
Q ss_pred CCce-EEEEecccccCCCC
Q 000114 836 LPAH-TVIIKGTQIYNPEK 853 (2158)
Q Consensus 836 lP~v-~vVI~~~~~yd~~~ 853 (2158)
+|.. +++| .|..|+
T Consensus 403 LP~rirYaI----F~GvPk 417 (1187)
T COG1110 403 LPHRIRYAV----FYGVPK 417 (1187)
T ss_pred chhheeEEE----EecCCc
Confidence 9974 4444 366664
No 254
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.47 E-value=8.1e-12 Score=160.59 Aligned_cols=288 Identities=21% Similarity=0.219 Sum_probs=173.9
Q ss_pred hHHHHHhcC--CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1330 PLYEALYQG--FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1330 ~~~~~l~~g--f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
..++++|.. ...|...|+-....++. +++.-+.||||.|||...++..+-...+ ++ +++||+||..|+.|.+
T Consensus 69 e~~~~fF~k~~G~~~ws~QR~WakR~~r-g~SFaiiAPTGvGKTTfg~~~sl~~a~k---gk--r~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 69 EEFEEFFKKATGFRPWSAQRVWAKRLVR-GKSFAIIAPTGVGKTTFGLLMSLYLAKK---GK--RVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHc-CCceEEEcCCCCchhHHHHHHHHHHHhc---CC--eEEEEecCHHHHHHHH
Confidence 345666762 23889999999999988 4559999999999998776655533332 44 9999999999999999
Q ss_pred HHHHHHhcCCCC---cEEEEEcCCcchh-----hhcccC--CcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1408 RDWEIKFGQGLG---MRVVELTGETAMD-----LKLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1408 ~~~~~~f~~~~g---~~v~~ltG~~~~~-----~~~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+++. .|+...| ..++ ++|..+.. .+.+.+ .||+|+|..-+..-... ..--+++++++|++|.++
T Consensus 143 ~kl~-~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~----L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 143 ERLK-KFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE----LSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred HHHH-HHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH----hcccCCCEEEEccHHHHH
Confidence 9999 5654323 3344 77765543 234444 49999997643222211 111368999999999765
Q ss_pred CCC----------CChHHHH------------------HHHHHHHHh--------hcCCCceEEEeccCCCChH----HH
Q 000114 1478 GQG----------GPVLEVI------------------VSRMRYIAS--------QVENKIRIVALSTSLANAK----DL 1517 (2158)
Q Consensus 1478 ~~~----------g~~~e~~------------------isrl~~i~~--------~~~~~~riV~lSATl~n~~----dl 1517 (2158)
... |-.=|.+ ..+.+.+.. +-.+..++|..|||..... -+
T Consensus 217 kaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~Lf 296 (1187)
T COG1110 217 KASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLF 296 (1187)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHH
Confidence 311 1111111 011111111 1124578999999985532 23
Q ss_pred HHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecC---hHHHHHHHHHH
Q 000114 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPS---RKYVRLTAVDL 1594 (2158)
Q Consensus 1518 ~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~s---r~~~~~~a~~L 1594 (2158)
.+.|| |.+.....-+.-.+..+.... .......+...+ +...||||+. ++.++.++..|
T Consensus 297 ReLlg--------FevG~~~~~LRNIvD~y~~~~--------~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~L 358 (1187)
T COG1110 297 RELLG--------FEVGSGGEGLRNIVDIYVESE--------SLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYL 358 (1187)
T ss_pred HHHhC--------CccCccchhhhheeeeeccCc--------cHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHH
Confidence 33343 332222211211111111111 111122233332 4468999999 66666666554
Q ss_pred HhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecC----ccc
Q 000114 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS----SMC 1670 (2158)
Q Consensus 1595 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~----~la 1670 (2158)
.. .+..+..+|++ ++..++.|..|+++|||+.. ++.
T Consensus 359 r~-----------------------------------~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lV 398 (1187)
T COG1110 359 RS-----------------------------------HGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLV 398 (1187)
T ss_pred Hh-----------------------------------cCceEEEeecc-----chhhhhhhccCceeEEEEeccccccee
Confidence 21 34557778873 36789999999999999964 599
Q ss_pred cccCCCc--cEEEEeccee
Q 000114 1671 WGVPLTA--HLVVVMGTQY 1687 (2158)
Q Consensus 1671 ~Gvdlp~--~~vVI~gt~~ 1687 (2158)
||+|+|. ..+|..|.+.
T Consensus 399 RGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 399 RGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred ecCCchhheeEEEEecCCc
Confidence 9999993 4456677773
No 255
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.47 E-value=9.1e-12 Score=150.20 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=101.4
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
..+..|......+.++||-+-|++.|+.+...|.. .+..+.++|+
T Consensus 434 DL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e-----------------------------------~gikv~YlHS 478 (663)
T COG0556 434 DLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKE-----------------------------------LGIKVRYLHS 478 (663)
T ss_pred HHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHh-----------------------------------cCceEEeeec
Confidence 45566666667889999999999999888866632 4566899999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
++..-+|..++...+.|..+|||.-+.+-.|+|+|.+.+|. ..|... -.+.-|-.+++|-+|||.| .-.|++
T Consensus 479 didTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVA----IlDADK-eGFLRse~SLIQtIGRAAR---N~~Gkv 550 (663)
T COG0556 479 DIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDADK-EGFLRSERSLIQTIGRAAR---NVNGKV 550 (663)
T ss_pred cchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEE----EeecCc-cccccccchHHHHHHHHhh---ccCCeE
Confidence 99999999999999999999999999999999999887664 233332 2344578899999999999 468999
Q ss_pred EEEecCCh
Q 000114 1722 VILCHAPR 1729 (2158)
Q Consensus 1722 iil~~~~~ 1729 (2158)
+++.+.-.
T Consensus 551 IlYAD~iT 558 (663)
T COG0556 551 ILYADKIT 558 (663)
T ss_pred EEEchhhh
Confidence 98876643
No 256
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=1.2e-11 Score=158.50 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|--..-.++.| -++...||+|||+++.+|+......+ ..+-+++|+--||.+-++.+..++
T Consensus 78 r~ydvQlig~l~Ll~G---~VaEM~TGEGKTLvA~l~a~l~AL~G-----------~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 78 RPFDVQLLGALRLLAG---DVIEMATGEGKTLAGAIAAAGYALQG-----------RRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CcchHHHHHHHHHhCC---CcccccCCCCHHHHHHHHHHHHHHcC-----------CCeEEEcCCHHHHHHHHHHHHHHH
Confidence 5788898888776655 37799999999999999988776653 368999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCH-hhhccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+.++++.+... +..-.++|+++|..-+ |.|.-+.. +......+.+.||||+|.+
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 999999999999876543 3355899999999875 55443321 1223455789999999965
No 257
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.42 E-value=1.4e-11 Score=162.77 Aligned_cols=359 Identities=14% Similarity=0.080 Sum_probs=200.8
Q ss_pred EccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-----cc-
Q 000114 1363 AAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-----LL- 1436 (2158)
Q Consensus 1363 ~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~-----~l- 1436 (2158)
.+.+|||||.+|+-.+-..+.. ++ .+|+++|..+|+.|..++++++|+. ..|..++++.+...+ .+
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~---Gk--~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA---GR--GALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc---CC--eEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHHHHHHh
Confidence 3346999999997777766655 55 8999999999999999999998862 468889988765422 22
Q ss_pred -cCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc--CCCCChH---HHHHHHHHHHHhhcCCCceEEEeccC
Q 000114 1437 -EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG--GQGGPVL---EVIVSRMRYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1437 -~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~--~~~g~~~---e~~isrl~~i~~~~~~~~riV~lSAT 1510 (2158)
...+|||+| +......+++++||||||-|--. +.+++.| +..+-|-+ ..++.+|+.|||
T Consensus 238 ~G~~~IViGt---------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~------~~~~~lvLgSaT 302 (665)
T PRK14873 238 RGQARVVVGT---------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH------QHGCALLIGGHA 302 (665)
T ss_pred CCCCcEEEEc---------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH------HcCCcEEEECCC
Confidence 234899999 44455678999999999999432 2344443 23333222 248899999999
Q ss_pred CCChHHHHHHhccCCCceEecCCCC----cccccEEEEecccccchH----HHHHhcChHHHHHHHHhHhcCCCEEEEec
Q 000114 1511 LANAKDLGEWIGATSHGLFNFPPGV----RPVPLEIHIQGVDITNFE----ARMQAMTKPTFTAIVQHAKNEKPALVFVP 1582 (2158)
Q Consensus 1511 l~n~~dl~~wl~~~~~~i~~f~~~~----rpv~l~~~i~~~~~~~~~----~~~~~~~k~~~~~i~~~~~~~~~~IVFv~ 1582 (2158)
.+ .+ .|..+............ ...| .+.+.+....... .....+....+..+.+.+..+ ++|||+|
T Consensus 303 PS-le---s~~~~~~g~~~~~~~~~~~~~~~~P-~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~ln 376 (665)
T PRK14873 303 RT-AE---AQALVESGWAHDLVAPRPVVRARAP-RVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVP 376 (665)
T ss_pred CC-HH---HHHHHhcCcceeeccccccccCCCC-eEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEec
Confidence 64 33 22222211111111110 1111 2333222110000 000125567788888887878 9999999
Q ss_pred ChHHHHHHHHHH------------------------HhhcccCCcccccccCCCcccchhh---HhhhhHHHHHHHhccc
Q 000114 1583 SRKYVRLTAVDL------------------------MTYSSMDGDQKSAFLLWPAEEVEPF---IDNIQEEMLKATLRHG 1635 (2158)
Q Consensus 1583 sr~~~~~~a~~L------------------------~~~~~~~~~~~~~~l~~~~~~l~~~---~~~i~d~~L~~~l~~g 1635 (2158)
.|-.+-.+.-.= |.+|.....+.. +.+|....+... .+++.++.-+.+-+..
T Consensus 377 RrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~-Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~ 455 (665)
T PRK14873 377 RRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWR-CPRCGSDRLRAVVVGARRTAEELGRAFPGVP 455 (665)
T ss_pred CCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCcc-CCCCcCCcceeeeccHHHHHHHHHHHCCCCC
Confidence 875432221111 222222111111 222222222221 3344433333333344
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCceEEEecC----ccccccCCCccEEEEecce--eecCCCCcCcCCCHHHHHHhhcc
Q 000114 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS----SMCWGVPLTAHLVVVMGTQ--YYDGQENAHTDYPVTDLLQMMGH 1709 (2158)
Q Consensus 1636 v~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~----~la~Gvdlp~~~vVI~gt~--~yd~~~~~~~~~s~~~~lQr~GR 1709 (2158)
|... ++..+++.|. ++.+|||+|. .++ | ++ ..|+|.+.. .+.+.. +-..-...-+.|-+||
T Consensus 456 V~r~-------d~d~~l~~~~-~~~~IlVGTqgaepm~~-g-~~--~lV~ildaD~~L~~pDf-RA~Er~~qll~qvagr 522 (665)
T PRK14873 456 VVTS-------GGDQVVDTVD-AGPALVVATPGAEPRVE-G-GY--GAALLLDAWALLGRQDL-RAAEDTLRRWMAAAAL 522 (665)
T ss_pred EEEE-------ChHHHHHhhc-cCCCEEEECCCCccccc-C-Cc--eEEEEEcchhhhcCCCc-ChHHHHHHHHHHHHHh
Confidence 4432 2345888896 5999999999 555 3 22 233343322 111110 1111136677899999
Q ss_pred CCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCC
Q 000114 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNY 1789 (2158)
Q Consensus 1710 aGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~ 1789 (2158)
|||. +..|.++|.+ .++...++.+.. .|--.|.....-.|+....|.|
T Consensus 523 agr~--~~~G~V~iq~-~p~~~~~~~l~~-----------------------------~d~~~F~~~EL~~R~~~~~PPf 570 (665)
T PRK14873 523 VRPR--ADGGQVVVVA-ESSLPTVQALIR-----------------------------WDPVGHAERELAERAEVGFPPA 570 (665)
T ss_pred hcCC--CCCCEEEEEe-CCCCHHHHHHHh-----------------------------CCHHHHHHHHHHHHHHcCccCc
Confidence 9996 4789999886 433222222211 1222345555557888888999
Q ss_pred ccCCCCC
Q 000114 1790 YNLQGVS 1796 (2158)
Q Consensus 1790 Y~~~~~~ 1796 (2158)
..+..+.
T Consensus 571 ~~la~i~ 577 (665)
T PRK14873 571 VRMAAVD 577 (665)
T ss_pred eeeEEEE
Confidence 8876553
No 258
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=5.6e-11 Score=152.35 Aligned_cols=128 Identities=18% Similarity=0.117 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++++|--..-.+++| + |+...||+|||+++.+|++..... +. .+.+++|+.-||.+-++.+...|. .+|+
T Consensus 78 r~ydvQlig~l~Ll~G-~--VaEM~TGEGKTLvA~l~a~l~AL~---G~--~VhvvT~NdyLA~RDae~m~~ly~-~LGL 148 (764)
T PRK12326 78 RPFDVQLLGALRLLAG-D--VIEMATGEGKTLAGAIAAAGYALQ---GR--RVHVITVNDYLARRDAEWMGPLYE-ALGL 148 (764)
T ss_pred CcchHHHHHHHHHhCC-C--cccccCCCCHHHHHHHHHHHHHHc---CC--CeEEEcCCHHHHHHHHHHHHHHHH-hcCC
Confidence 5677777777666653 3 679999999999999999866655 44 688999999999999998885554 4699
Q ss_pred EEEEEcCCcchh-hhcccCCcEEEeCHHHHH-HHHhhhh----ccccccceeEEEeccccccc
Q 000114 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRWK----QRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1421 ~v~~ltG~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~~----~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+.++++.+.. .+..-.++|+++|..-+- +.+|-.. .....+.+.+.||||+|.++
T Consensus 149 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 149 TVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999999987765 344557899999988752 2333211 12234568899999999654
No 259
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=1.2e-11 Score=162.36 Aligned_cols=132 Identities=15% Similarity=0.081 Sum_probs=99.0
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
..+.|+||||+|+..++.++..|.. .+.....+|+ .+.+|...
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~-----------------------------------~gI~h~vLna--kq~~REa~ 638 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRA-----------------------------------KRIAHNVLNA--KQHDREAE 638 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHH-----------------------------------cCCCceeecC--CHHHhHHH
Confidence 5788999999999999988876632 1233567886 57789999
Q ss_pred HHHHHcCCceEEEecCccccccCCC---ccE-----EEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLT---AHL-----VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp---~~~-----vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
+..|+.+...|+|||++++||+|++ .+. +|| +...+.+...|.|++|||||.| ..|.+..
T Consensus 639 Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VI----------gterhes~Rid~Ql~GRtGRqG--dpGsS~f 706 (1025)
T PRK12900 639 IVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFIL----------GSERHESRRIDRQLRGRAGRQG--DPGESVF 706 (1025)
T ss_pred HHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceee----------CCCCCchHHHHHHHhhhhhcCC--CCcceEE
Confidence 9999999999999999999999999 332 334 3345667888999999999998 7888888
Q ss_pred EecCChHH-------HHHHHh-----hCCCccccchhhHHH
Q 000114 1724 LCHAPRKE-------YYKKFL-----YDAFPVESHLHHFLH 1752 (2158)
Q Consensus 1724 l~~~~~~~-------~~~k~l-----~~~~piES~L~~~l~ 1752 (2158)
+++..+.- .+.+++ .++.|+++.+.....
T Consensus 707 fvSleD~Lmr~f~~~~i~~~~~~~~~~e~e~I~~~~i~k~i 747 (1025)
T PRK12900 707 YVSLEDELMRLFGSDRVISVMDRLGHEEGDVIEHSMITKSI 747 (1025)
T ss_pred EechhHHHHHhhCcHHHHHHHHHcCCCCCCcccchHHHHHH
Confidence 88775421 122222 245677777744433
No 260
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.40 E-value=4.1e-11 Score=166.58 Aligned_cols=136 Identities=18% Similarity=0.272 Sum_probs=90.2
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHH
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~ 1652 (2158)
.++++|||++|.+..+.++..|..... ..++..+--|++...|..+.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~---------------------------------~~~~~ll~Qg~~~~~r~~l~ 797 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEE---------------------------------LEGYVLLAQGVSSGSRARLT 797 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhccc---------------------------------ccCceEEecCCCCCCHHHHH
Confidence 467899999999998888866632110 11222333355556688999
Q ss_pred HHHHcCCceEEEecCccccccCCCc---cEEEEecceeecCC---------------CCcCcCC----CHHHHHHhhccC
Q 000114 1653 ALFEAGKIKVCVMSSSMCWGVPLTA---HLVVVMGTQYYDGQ---------------ENAHTDY----PVTDLLQMMGHA 1710 (2158)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdlp~---~~vVI~gt~~yd~~---------------~~~~~~~----s~~~~lQr~GRa 1710 (2158)
+.|+.+.-.||++|..+..|||+|+ ..|||.+.++-.+. .+.+..+ .+..+.|-+||.
T Consensus 798 ~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRl 877 (928)
T PRK08074 798 KQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRL 877 (928)
T ss_pred HHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhh
Confidence 9999998999999999999999996 45667666653222 0112222 366788999999
Q ss_pred CCCCCCCceEEEEEecCChHHHHHHHhhCCCc
Q 000114 1711 SRPLLDNSGKCVILCHAPRKEYYKKFLYDAFP 1742 (2158)
Q Consensus 1711 GR~g~d~~G~~iil~~~~~~~~~~k~l~~~~p 1742 (2158)
-|.. +..|.++++-..-....|.+.+-..+|
T Consensus 878 IRs~-~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 878 IRTE-TDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred cccC-CceEEEEEecCccccchHHHHHHHhCC
Confidence 9986 567876666655443445443333333
No 261
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=3.7e-11 Score=157.68 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.+.++|-..--. ++. . -|..+.||+|||+++.+|++.....+ ..+-+++|+--||.+-+..+..++
T Consensus 82 ~~ydVQliGg~~-Lh~-G-~iaEM~TGEGKTLvA~l~a~l~al~G-----------~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 82 RHFDVQLIGGMT-LHE-G-KIAEMRTGEGKTLVGTLAVYLNALSG-----------KGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CcchhHHHhhhH-hcc-C-ccccccCCCCChHHHHHHHHHHHHcC-----------CCEEEEeCCHHHHHHHHHHHHHHh
Confidence 456667544333 332 2 58899999999999999998776553 368999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCH-hhhccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+.++|+.+... +..-.++|+++|..-+ |.|..... +......+.++||||+|.+
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 999999999999876543 3345799999999875 55544321 1233467899999999965
No 262
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.40 E-value=1e-12 Score=155.57 Aligned_cols=366 Identities=17% Similarity=0.204 Sum_probs=209.2
Q ss_pred ccCCCCCcccccCcceEEecCCCCCCCCCCCCccc--ccCCCChhhHhhcCCCCCCCHHHHHHHHHHHcCCC--cEEEEc
Q 000114 443 CDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLI--KISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSAD--NILLCA 518 (2158)
Q Consensus 443 ~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~--~i~~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~--nvlv~A 518 (2158)
+.+-+.+....+|..-|+..|-...-.|..+.... .|. | +.-..++|+|.+++..++.++. .-+|+.
T Consensus 257 fei~~e~vE~vkkRCieidyPlLeEYDFRND~~npdl~id-L--------KPst~iRpYQEksL~KMFGNgRARSGiIVL 327 (776)
T KOG1123|consen 257 FEIKQESVETVKKRCIEIDYPLLEEYDFRNDNVNPDLDID-L--------KPSTQIRPYQEKSLSKMFGNGRARSGIIVL 327 (776)
T ss_pred eeecHHHHHHHHHhhhccCchhhhhhccccCCCCCCCCcC-c--------CcccccCchHHHHHHHHhCCCcccCceEEE
Confidence 44444444555666667777765444332221110 111 1 2345789999999999987643 568899
Q ss_pred cCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccc
Q 000114 519 PTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEET 598 (2158)
Q Consensus 519 PTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~ 598 (2158)
|.|+|||++..-++.. + +.++|+++..---+.|+...|..+..--.-.++.+|+|.... ...++
T Consensus 328 PCGAGKtLVGvTAa~t-i-------------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~--~~~~~ 391 (776)
T KOG1123|consen 328 PCGAGKTLVGVTAACT-I-------------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKER--FPSGA 391 (776)
T ss_pred ecCCCCceeeeeeeee-e-------------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeecccccc--CCCCC
Confidence 9999999987655432 1 226899999988899999998876543344577888876432 23577
Q ss_pred cEEEcchhHHHHHHhccCC------CccccccceEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 599 QIIVTTPEKWDIITRKSGD------RTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 599 ~IiV~TPekld~l~r~~~~------~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
.|+|+|.-.+..-.+++.+ ...-+..+++|+||+|.+.. .+..++. .+ +..++ +||+|||-
T Consensus 392 gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls--------iv---~aHcK-LGLTATLv 459 (776)
T KOG1123|consen 392 GVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS--------IV---QAHCK-LGLTATLV 459 (776)
T ss_pred cEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH--------HH---HHHhh-ccceeEEe
Confidence 8999998654222222111 11123468999999998753 2222222 11 22333 89999985
Q ss_pred ChHH----H----------HHHHhccccCceEEecCCcccccceeEEEeeccC-ChhHH--HHHhhHHHH---HH-HHHH
Q 000114 672 NYED----V----------ALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK-KPLQR--FQLMNDLCY---EK-VVAV 730 (2158)
Q Consensus 672 n~~d----v----------~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~-~~~~~--~~~l~~~~~---~~-i~~~ 730 (2158)
..+| + +.|+.......+-.......-+|....|+..... +..++ +..||..-+ +. +.-+
T Consensus 460 REDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~H 539 (776)
T KOG1123|consen 460 REDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFH 539 (776)
T ss_pred eccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHH
Confidence 3222 1 3343322111111111110111111111100000 00000 111221111 11 1111
Q ss_pred h-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHH
Q 000114 731 A-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2158)
Q Consensus 731 ~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R 809 (2158)
. .+.++|||..+.-.....|..| |--+.+|..++.+|
T Consensus 540 E~RgDKiIVFsDnvfALk~YAikl------------------------------------------~KpfIYG~Tsq~ER 577 (776)
T KOG1123|consen 540 ERRGDKIIVFSDNVFALKEYAIKL------------------------------------------GKPFIYGPTSQNER 577 (776)
T ss_pred HhcCCeEEEEeccHHHHHHHHHHc------------------------------------------CCceEECCCchhHH
Confidence 1 3668888887765444333322 22355899999999
Q ss_pred HHHHHHHh-CCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC--CC--ccEEEE
Q 000114 810 QLVEDLFG-DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY--DS--YGEGII 884 (2158)
Q Consensus 810 ~~v~~~F~-~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~--d~--~G~~ii 884 (2158)
..+++.|+ +..++-++-.-+....+|+|..+|+|+-...+. |..+=.||.||.-|+.. |. ....|.
T Consensus 578 m~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G---------SRRQEAQRLGRILRAKk~~de~fnafFYS 648 (776)
T KOG1123|consen 578 MKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG---------SRRQEAQRLGRILRAKKRNDEEFNAFFYS 648 (776)
T ss_pred HHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc---------chHHHHHHHHHHHHHhhcCccccceeeee
Confidence 99999998 456888888899999999999999998444443 45578899998777532 11 234455
Q ss_pred EcCCCcHHHHHH
Q 000114 885 ITGHSELRYYLS 896 (2158)
Q Consensus 885 l~~~~~~~~y~~ 896 (2158)
+++.+..+.|-+
T Consensus 649 LVS~DTqEM~YS 660 (776)
T KOG1123|consen 649 LVSKDTQEMYYS 660 (776)
T ss_pred eeecchHHHHhh
Confidence 666665555443
No 263
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.39 E-value=4.1e-12 Score=150.52 Aligned_cols=298 Identities=13% Similarity=0.210 Sum_probs=187.9
Q ss_pred CCCCCHHHHHHHHHHhcCC--CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1339 FKHFNPIQTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~--~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
-..++|+|...+..++.++ ++-+|+.|.|+|||++..-|+.. -++ +|++++.+-.-+.|+...++ .+..
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t------ikK--~clvLcts~VSVeQWkqQfk-~wst 370 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT------IKK--SCLVLCTSAVSVEQWKQQFK-QWST 370 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee------ecc--cEEEEecCccCHHHHHHHHH-hhcc
Confidence 4578999999999998654 46899999999999988655541 133 79999999888888877776 5555
Q ss_pred CCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHH-hhhhccc-----cccceeEEEecccccccCCCCChHHHHHHH
Q 000114 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS-RRWKQRK-----YVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~-r~~~~~~-----~l~~v~llIiDEaH~l~~~~g~~~e~~isr 1490 (2158)
.-.-.++.+|++..... -..+.|+|+|..++..-- |.|...+ .-+..+++|+||+|.+.. ..++.+++-
T Consensus 371 i~d~~i~rFTsd~Ke~~--~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA---~MFRRVlsi 445 (776)
T KOG1123|consen 371 IQDDQICRFTSDAKERF--PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA---KMFRRVLSI 445 (776)
T ss_pred cCccceEEeeccccccC--CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH---HHHHHHHHH
Confidence 54567888888765432 235689999976653211 1111111 124689999999998752 223334433
Q ss_pred HHHHHhhcCCCceEEEeccCCCChHH--------------HHHHhccCCCceEecCCCCcccccEEEEecccccchHHH-
Q 000114 1491 MRYIASQVENKIRIVALSTSLANAKD--------------LGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEAR- 1555 (2158)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n~~d--------------l~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~- 1555 (2158)
+.. .+ -+||+||+-..+| -++|+.....+.+. .|..-....+.....+...
T Consensus 446 v~a-------Hc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA------~VqCaEVWCpMt~eFy~eYL 511 (776)
T KOG1123|consen 446 VQA-------HC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIA------KVQCAEVWCPMTPEFYREYL 511 (776)
T ss_pred HHH-------Hh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCcee------EEeeeeeecCCCHHHHHHHH
Confidence 332 22 3899999865432 14566554433221 0111111111111111111
Q ss_pred ---------HHhcChHHHHH----HHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhh
Q 000114 1556 ---------MQAMTKPTFTA----IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDN 1622 (2158)
Q Consensus 1556 ---------~~~~~k~~~~~----i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 1622 (2158)
+..|+...+.+ |.-|-..+.++|||..+.-.-...|.
T Consensus 512 ~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAi------------------------------ 561 (776)
T KOG1123|consen 512 RENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAI------------------------------ 561 (776)
T ss_pred hhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH------------------------------
Confidence 12234333332 22233466778888877654444442
Q ss_pred hhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-CCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHH
Q 000114 1623 IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-GKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVT 1701 (2158)
Q Consensus 1623 i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~ 1701 (2158)
..|-.+++|..++.+|..|++.|.. ..+..++-+.+...++|+|..+|+|.=...|. |-.
T Consensus 562 ----------kl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G---------SRR 622 (776)
T KOG1123|consen 562 ----------KLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG---------SRR 622 (776)
T ss_pred ----------HcCCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc---------chH
Confidence 2345688999999999999999984 57899999999999999999999983222222 345
Q ss_pred HHHHhhccCCCC
Q 000114 1702 DLLQMMGHASRP 1713 (2158)
Q Consensus 1702 ~~lQr~GRaGR~ 1713 (2158)
+=.||.||.-|+
T Consensus 623 QEAQRLGRILRA 634 (776)
T KOG1123|consen 623 QEAQRLGRILRA 634 (776)
T ss_pred HHHHHHHHHHHH
Confidence 568999987775
No 264
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.33 E-value=1.6e-11 Score=132.45 Aligned_cols=140 Identities=29% Similarity=0.372 Sum_probs=102.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2158)
++++++|||+|||.+++..+.+....+ ...+++|++|+++|+.|....+...... ++.+..+.+......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~---------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL---------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc---------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH
Confidence 689999999999999999988877652 2348999999999999999999887665 677888888665544
Q ss_pred hh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 593 QQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 593 ~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
.. ....+|+++|++.+........ ......+++||||+|.+......... ...........+++++|||
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~------~~~~~~~~~~~~~i~~saT 143 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGLLG------LKILLKLPKDRQVLLLSAT 143 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHHHH------HHHHhhCCccceEEEEecc
Confidence 32 5688999999998643333221 23456889999999998653211111 1111224567899999999
Q ss_pred c
Q 000114 670 L 670 (2158)
Q Consensus 670 l 670 (2158)
+
T Consensus 144 p 144 (144)
T cd00046 144 P 144 (144)
T ss_pred C
Confidence 4
No 265
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.32 E-value=8.3e-12 Score=141.99 Aligned_cols=151 Identities=23% Similarity=0.333 Sum_probs=100.3
Q ss_pred CCCHHHHHHHHHHhc------CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000114 1341 HFNPIQTQVFTVLYN------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~------~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f 1414 (2158)
.|+++|.+|+..+.+ ...++++.+|||||||.++...+.+... ++++++|++.|+.|..+.|. .+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~-~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFD-DF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHH-Hh
Confidence 578999999999874 2578999999999999999765554432 79999999999999999996 34
Q ss_pred cCCCCcEEEEEc-------------CCcch--hhhcccCCcEEEeCHHHHHHHHhh---------hhccccccceeEEEe
Q 000114 1415 GQGLGMRVVELT-------------GETAM--DLKLLEKGQIIISTPEKWDALSRR---------WKQRKYVQQVSLFII 1470 (2158)
Q Consensus 1415 ~~~~g~~v~~lt-------------G~~~~--~~~~l~~~~IIV~TPe~l~~l~r~---------~~~~~~l~~v~llIi 1470 (2158)
... ...+.... ..... ........+++++|..+|...... ..........++||+
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 74 GSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp STT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 332 11111110 00000 112334569999999999876543 112234567899999
Q ss_pred cccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1471 DELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1471 DEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
||||+.....+ +..++. .....+|+||||+.
T Consensus 153 DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred ehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 99998864321 222222 35788999999974
No 266
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.31 E-value=7.5e-12 Score=142.39 Aligned_cols=151 Identities=24% Similarity=0.291 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHc------CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALS------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
+|+++|.+++..+.. ...++++.+|||||||.+++..+.+... ++++++|++.|+.|+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------------ceeEecCHHHHHHHHHH
Confidence 589999999999874 2567999999999999999876666542 69999999999999999
Q ss_pred HHHhhcccCCcEEEEE------------eCCCccCH---hhhccccEEEcchhHHHHHHhccC---------CCcccccc
Q 000114 569 NLSNRLQMYDVKVREL------------SGDQTLTR---QQIEETQIIVTTPEKWDIITRKSG---------DRTYTQLV 624 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l------------~Gd~~~~~---~~~~~~~IiV~TPekld~l~r~~~---------~~~~l~~v 624 (2158)
.|....... ..+... ........ ......+++++|..+|....+... ........
T Consensus 69 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 69 EFDDFGSEK-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHSTTS-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHhhhhh-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 996544321 111111 00011111 113467899999999854433211 11334567
Q ss_pred ceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 625 ~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
++||+||||++..... +..++. .....+|+||||++
T Consensus 148 ~~vI~DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 148 DLVIIDEAHHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp SEEEEETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred CEEEEehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 8999999998753211 232222 45778999999964
No 267
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.30 E-value=2.7e-11 Score=130.67 Aligned_cols=141 Identities=29% Similarity=0.435 Sum_probs=101.1
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---h
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL---K 1434 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~ 1434 (2158)
+++++.+|||+|||.++..++.+.... ...+ +++|++|+++++.|....+...+.. +..+..+.+...... .
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~--~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGG--QVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCC--CEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHH
Confidence 368999999999999998888877765 2233 8999999999999999988865542 567777777654432 2
Q ss_pred cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCC
Q 000114 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl 1511 (2158)
.....+|+++|++.+........ ......+++|+||+|.+....... .. +... .......+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~---~~--~~~~-~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGL---LG--LKIL-LKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHH---HH--HHHH-hhCCccceEEEEeccC
Confidence 34577999999998876555432 235578999999999987543111 10 1111 2235678999999995
No 268
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.30 E-value=7e-10 Score=144.66 Aligned_cols=59 Identities=27% Similarity=0.316 Sum_probs=49.6
Q ss_pred HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
++.++..+++.||||+|||++|++|++..+... .+.++||++||++|+.|+++.+..+.
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 455677799999999999999999999877532 13489999999999999999887665
No 269
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=1.9e-10 Score=151.15 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=84.8
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh-hhcccC
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLLEK 1438 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~-~~~l~~ 1438 (2158)
-|.-+.||+|||+++.+|++-.... +. .+.+++|+.-||.+-++.+...|. .+|++|+.++|+.+.. .+..-.
T Consensus 98 ~iaEM~TGEGKTLvA~l~a~l~al~---G~--~VhvvT~ndyLA~RD~e~m~~l~~-~lGl~v~~i~~~~~~~err~~Y~ 171 (913)
T PRK13103 98 KIAEMRTGEGKTLVGTLAVYLNALS---GK--GVHVVTVNDYLARRDANWMRPLYE-FLGLSVGIVTPFQPPEEKRAAYA 171 (913)
T ss_pred ccccccCCCCChHHHHHHHHHHHHc---CC--CEEEEeCCHHHHHHHHHHHHHHhc-ccCCEEEEECCCCCHHHHHHHhc
Confidence 5889999999999999999866554 44 688999999999999998885554 5699999999987654 344556
Q ss_pred CcEEEeCHHHH-HHHHhh-h---hccccccceeEEEeccccccc
Q 000114 1439 GQIIISTPEKW-DALSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~-~---~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
++|+++|..-+ .+.+|. . ......+.+.++||||+|.++
T Consensus 172 ~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 172 ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 89999998875 112221 1 112234778999999999654
No 270
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.27 E-value=8.4e-12 Score=120.76 Aligned_cols=73 Identities=36% Similarity=0.578 Sum_probs=66.5
Q ss_pred ccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
....+.++||+|+..+|..+++.|.+|..+|||||+++++|||+|++++||. |+++. +..+|.|++||+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~~~~------~~~~~~Q~~GR~~ 75 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YDPPW------SPEEYIQRIGRAG 75 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SSSES------SHHHHHHHHTTSS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----cccCC------CHHHHHHHhhcCC
Confidence 4567899999999999999999999999999999999999999999999999 55443 7789999999999
Q ss_pred CCC
Q 000114 873 RPQ 875 (2158)
Q Consensus 873 R~g 875 (2158)
|.|
T Consensus 76 R~g 78 (78)
T PF00271_consen 76 RIG 78 (78)
T ss_dssp TTT
T ss_pred CCC
Confidence 975
No 271
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.27 E-value=1.4e-09 Score=141.76 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=52.0
Q ss_pred HHHHHHHH---hcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1346 QTQVFTVL---YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1346 Q~q~~~~l---~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
|.+.+..+ +..+..+++.||||+|||++|++|++..... ..+. ++||++||++|+.|++++|. .+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-~~~~--rvlIstpT~~Lq~Ql~~~l~-~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-RPDQ--KIAIAVPTLALMGQLWSELE-RLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-ccCc--eEEEECCcHHHHHHHHHHHH-HHH
Confidence 44444443 3456779999999999999999999987664 1234 99999999999999999888 454
No 272
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.26 E-value=2.6e-11 Score=129.70 Aligned_cols=105 Identities=32% Similarity=0.485 Sum_probs=90.1
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.++++||||+++..++.+++.|.+. ..++.++||+++..+|..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~~~~ 69 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------------------------------------GIKVAALHGDGSQEEREE 69 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------------------------------------CCcEEEEECCCCHHHHHH
Confidence 4679999999999999999888651 245788999999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
+.+.|.+|..+||+||+++++|+|+|..++||..+.++ +..+++|++||+||.| ..|.++++
T Consensus 70 ~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~----------~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 70 VLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPW----------SPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCC----------CHHHheecccccccCC--CCceEEeC
Confidence 99999999999999999999999999999888744333 6678999999999988 46777653
No 273
>COG4889 Predicted helicase [General function prediction only]
Probab=99.26 E-value=2.2e-11 Score=151.87 Aligned_cols=340 Identities=19% Similarity=0.281 Sum_probs=185.9
Q ss_pred CCCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
.-++|+|+|+.|+..++.+ ++.-=+.+..|+|||+.++- |...+.. .+++|++|+.+|..|..+
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~------------~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA------------ARILFLVPSISLLSQTLR 224 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh------------hheEeecchHHHHHHHHH
Confidence 4568999999999998764 33333445679999998854 3444432 489999999999999999
Q ss_pred HHHhhcccCCcEEEEEeCCCccCHhh----------------------------hccccEEEcchhHHHHHHhccCCCcc
Q 000114 569 NLSNRLQMYDVKVRELSGDQTLTRQQ----------------------------IEETQIIVTTPEKWDIITRKSGDRTY 620 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~----------------------------~~~~~IiV~TPekld~l~r~~~~~~~ 620 (2158)
.|..- +.+.++...+++|...++.. ..+--|+++|.+.+-.+..- ...-
T Consensus 225 ew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G 301 (1518)
T COG4889 225 EWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAG 301 (1518)
T ss_pred HHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcC
Confidence 99863 34567777777765543221 01234888888865433322 1234
Q ss_pred ccccceEEeeccccccc--CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceE------Eec
Q 000114 621 TQLVKLLIIDEIHLLHD--NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF------YFD 692 (2158)
Q Consensus 621 l~~v~lIIiDEaH~l~d--~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~------~f~ 692 (2158)
+..+++||.||||+-.. .-|.. .+...|... .+.-...+.+-|+||..-+.+-.+--.......+. .|.
T Consensus 302 ~~~fDliicDEAHRTtGa~~a~dd-~saFt~vHs--~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fG 378 (1518)
T COG4889 302 LDEFDLIICDEAHRTTGATLAGDD-KSAFTRVHS--DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFG 378 (1518)
T ss_pred CCCccEEEecchhccccceecccC-cccceeecC--cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhc
Confidence 66789999999997532 01100 011111100 00112234577888843222211111000000000 111
Q ss_pred CCcccc------------cceeEEEeeccCChhHHHH-------------HhhHH--HHHHHHHHhC-------------
Q 000114 693 NSYRPV------------PLSQQYIGIQVKKPLQRFQ-------------LMNDL--CYEKVVAVAG------------- 732 (2158)
Q Consensus 693 ~~~rpv------------~l~~~~~~~~~~~~~~~~~-------------~l~~~--~~~~i~~~~~------------- 732 (2158)
+.|... .....+..+........++ ....+ |+..+.+..+
T Consensus 379 eef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~a 458 (1518)
T COG4889 379 EEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTA 458 (1518)
T ss_pred hhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCch
Confidence 111110 0001111111110000000 00000 1111211111
Q ss_pred -CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh-hhccCCeEEec--CCCCHHH
Q 000114 733 -KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK-DLLPYGFAIHH--AGMTRGD 808 (2158)
Q Consensus 733 -~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~ll~~gv~~hH--agl~~~~ 808 (2158)
..++|-||.+.+....++..+.... ..+. .+++ +.....+.+-| |.|...+
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~Vv--------------------e~Y~-----~Elk~d~~nL~iSi~HvDGtmNal~ 513 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETVV--------------------EAYD-----EELKKDFKNLKISIDHVDGTMNALE 513 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH--------------------HHHH-----HHHHhcCCCceEEeecccccccHHH
Confidence 1245677777777766666554321 1011 1111 12333455556 7899999
Q ss_pred HHHHHHH---HhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 809 RQLVEDL---FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 809 R~~v~~~---F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
|...+.. |....++||--.-.|+.|||+|+.+-||- +||.+ |.-|++|-+||.-|... .+-.+||+
T Consensus 514 R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF----f~pr~------smVDIVQaVGRVMRKa~-gK~yGYII 582 (1518)
T COG4889 514 RLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF----FDPRS------SMVDIVQAVGRVMRKAK-GKKYGYII 582 (1518)
T ss_pred HHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE----ecCch------hHHHHHHHHHHHHHhCc-CCccceEE
Confidence 9554443 45678999999999999999999999986 88887 89999999999999543 23345555
Q ss_pred c
Q 000114 886 T 886 (2158)
Q Consensus 886 ~ 886 (2158)
.
T Consensus 583 L 583 (1518)
T COG4889 583 L 583 (1518)
T ss_pred E
Confidence 4
No 274
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.25 E-value=8.9e-10 Score=145.69 Aligned_cols=161 Identities=22% Similarity=0.214 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHc----CCC---cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 496 LNRVQSRVYKSALS----SAD---NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~----~~~---nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
-..+|-+|+..+.. +.+ -++-.|.||||||++=.- |+..+... ..+.+..+..-.|.|.-|.-.
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~--------~~g~RfsiALGLRTLTLQTGd 479 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD--------KQGARFAIALGLRSLTLQTGH 479 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC--------CCCceEEEEccccceeccchH
Confidence 35699999988754 111 245669999999986433 33333321 145688888888888888888
Q ss_pred HHHhhcccCCcEEEEEeCCCccC-----------------------------------------H-------------hh
Q 000114 569 NLSNRLQMYDVKVRELSGDQTLT-----------------------------------------R-------------QQ 594 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~-----------------------------------------~-------------~~ 594 (2158)
.++++++--.-.++++.|+.... . ..
T Consensus 480 a~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 480 ALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 88887653323344444422100 0 00
Q ss_pred hccccEEEcchhHHHHHH--hccCCCcccc----ccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 595 IEETQIIVTTPEKWDIIT--RKSGDRTYTQ----LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 595 ~~~~~IiV~TPekld~l~--r~~~~~~~l~----~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
.-.+.|+|||++.+-... -+.+. ..+. .=+.|||||+|.+ .+..-.++.+++..... -..++++|||
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~-~~l~ll~La~svlVlDEVHaY----D~~~~~~L~rlL~w~~~--lG~~VlLmSA 632 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGH-HIAPMLRLMSSDLILDEPDDY----EPEDLPALLRLVQLAGL--LGSRVLLSSA 632 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccch-hHHHHHHhcCCCEEEECCccC----CHHHHHHHHHHHHHHHH--cCCCEEEEeC
Confidence 113569999999863322 11111 1111 1268999999965 44445556666554443 4688999999
Q ss_pred ccCC
Q 000114 669 TLPN 672 (2158)
Q Consensus 669 Tlpn 672 (2158)
|||.
T Consensus 633 TLP~ 636 (1110)
T TIGR02562 633 TLPP 636 (1110)
T ss_pred CCCH
Confidence 9995
No 275
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.25 E-value=2.1e-09 Score=145.20 Aligned_cols=130 Identities=21% Similarity=0.310 Sum_probs=85.2
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
++.++||++|.+..+.++..|.... . ..+.. ++. ..|..+
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~-~-----------------------------------~~ll~-Q~~---~~~~~l 573 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDL-R-----------------------------------LMLLV-QGD---QPRQRL 573 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhc-C-----------------------------------CcEEE-eCC---chHHHH
Confidence 4458999999999999888876421 0 11112 332 246677
Q ss_pred HHHHh----CCCceEEEechhhhhccCCCc--eEEEEecccccCCCCC----------------ccccC----CHHHHHH
Q 000114 813 EDLFG----DGHVQVLVSTATLAWGVNLPA--HTVIIKGTQIYNPEKG----------------AWTEL----SPLDIMQ 866 (2158)
Q Consensus 813 ~~~F~----~g~i~VLVaT~tla~GVdlP~--v~vVI~~~~~yd~~~g----------------~~~~~----s~~~~~Q 866 (2158)
++.|+ .|.-.||++|..+..|||+|+ .+.||....||.++.. .|.++ ....+.|
T Consensus 574 l~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Q 653 (697)
T PRK11747 574 LEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQ 653 (697)
T ss_pred HHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 76666 467789999999999999997 4666666777765531 12222 3457889
Q ss_pred hhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcCCCc
Q 000114 867 MLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2158)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (2158)
.+||.=|...| .|..+++-..-....|-+.+-..+|
T Consensus 654 g~GRlIRs~~D-~G~i~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 654 AVGRLIRSEQD-RGRVTILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred HhccccccCCc-eEEEEEEcccccchhHHHHHHHhCC
Confidence 99999996544 6776666555444455444444444
No 276
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.24 E-value=8.9e-11 Score=157.19 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=95.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.+.++||||+|++.++.++..|.+.++ .+.++||+|+..+|..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~~h~~~~~~~R~~ 487 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGI-------------------------------------KVRYLHSDIDTLERVE 487 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcce-------------------------------------eEEEEECCCCHHHHHH
Confidence 367999999999999999999987543 2566799999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEeccc-ccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ-IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~-~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
+++.|+.|.+.|||||+.+++|+|+|++.+||..+. .+..+ -+..+|+||+|||||. ..|.++++++..
T Consensus 488 ~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~------~~~~~yiqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 488 IIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFL------RSERSLIQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred HHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccccC------CCHHHHHHHhccccCC---CCCEEEEEecCC
Confidence 999999999999999999999999999999888332 12222 2778999999999994 479999999854
No 277
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.24 E-value=3.6e-11 Score=128.58 Aligned_cols=113 Identities=27% Similarity=0.363 Sum_probs=92.7
Q ss_pred HHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCC
Q 000114 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (2158)
Q Consensus 1565 ~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~ 1644 (2158)
..+......++++||||++...++.++..|.. ...++.++||+++
T Consensus 19 ~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~-----------------------------------~~~~~~~~~~~~~ 63 (131)
T cd00079 19 ELLKEHLKKGGKVLIFCPSKKMLDELAELLRK-----------------------------------PGIKVAALHGDGS 63 (131)
T ss_pred HHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh-----------------------------------cCCcEEEEECCCC
Confidence 33434433678999999999999888866621 3456899999999
Q ss_pred HHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEE
Q 000114 1645 KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2158)
Q Consensus 1645 ~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil 1724 (2158)
..+|..+.+.|.+|...||++|+.+++|+|+|....|| ....+++..++.|++||+||.| ..|.++++
T Consensus 64 ~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi----------~~~~~~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 64 QEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVI----------NYDLPWSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEE----------EeCCCCCHHHheecccccccCC--CCceEEeC
Confidence 99999999999999999999999999999999776666 2344778999999999999988 37777653
No 278
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=1.8e-09 Score=147.20 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
|..++|.|.+....++ ..+.++++.||||+|||++.+.|.+...... +...+++|.+.|.+-..|..+++++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~--~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK--PEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc--cccccEEEEcccchHHHHHHHHHHh
Confidence 7788999999988865 4677899999999999999999999866542 2123899999999999999999985
No 279
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.22 E-value=7.1e-10 Score=146.58 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHhc----CCC---cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1343 NPIQTQVFTVLYN----TDD---NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1343 ~~iQ~q~~~~l~~----~~~---nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
..+|-+|+..+.. +.+ =++--|.||||||++=.- |+..+.. +..++|..+-.-.|.|.-|+-..++++++
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd--~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD--DKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC--CCCCceEEEEccccceeccchHHHHHhcC
Confidence 4689999988754 111 134459999999987533 3334443 23345888999999999999888887764
Q ss_pred CCCCcEEEEEcCCcc----------------------hh--------------------------------hhcccCCcE
Q 000114 1416 QGLGMRVVELTGETA----------------------MD--------------------------------LKLLEKGQI 1441 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~----------------------~~--------------------------------~~~l~~~~I 1441 (2158)
- ..-..+++.|+.. .. .+.+-.++|
T Consensus 487 L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 487 L-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred C-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 2 1222333333110 00 011123489
Q ss_pred EEeCHHHHHHHHhhhhccc-ccc----ceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh
Q 000114 1442 IISTPEKWDALSRRWKQRK-YVQ----QVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2158)
Q Consensus 1442 IV~TPe~l~~l~r~~~~~~-~l~----~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~ 1514 (2158)
+|||+.++....-..+... .+. .-+.|||||+|.+.... -.++.++-..... -+.++++||||+|..
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~----~~~L~rlL~w~~~--lG~~VlLmSATLP~~ 637 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED----LPALLRLVQLAGL--LGSRVLLSSATLPPA 637 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH----HHHHHHHHHHHHH--cCCCEEEEeCCCCHH
Confidence 9999999876552222111 111 13579999999774322 2244444444333 268899999999873
No 280
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.21 E-value=6.7e-10 Score=151.52 Aligned_cols=200 Identities=17% Similarity=0.210 Sum_probs=114.4
Q ss_pred cEEEEccccCChHHHHHHHhccccCceE---EecCCcccccceeEEEeeccCChh--HHHHHhhHHHHHHHHHHhCCCeE
Q 000114 662 RLVGLSATLPNYEDVALFLRVNLEKGLF---YFDNSYRPVPLSQQYIGIQVKKPL--QRFQLMNDLCYEKVVAVAGKHQV 736 (2158)
Q Consensus 662 riv~lSATlpn~~dv~~~l~~~~~~~~~---~f~~~~rpv~l~~~~~~~~~~~~~--~~~~~l~~~~~~~i~~~~~~~~v 736 (2158)
.+|++||||.....+..+++.......+ ...+.+.........+........ .....+...+.+.+ .. .++.+
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~-~~-~~~~~ 482 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREIL-KA-SPGGV 482 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHH-hh-cCCCE
Confidence 4899999998877777777665332222 111111111111122221111111 12222222222222 11 24589
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHH
Q 000114 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2158)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2158)
+||++|-+....++..+...... + .-..+|.-+ +...++.|
T Consensus 483 lvlF~Sy~~l~~~~~~~~~~~~~---~---------------------------------~v~~q~~~~---~~~~l~~f 523 (654)
T COG1199 483 LVLFPSYEYLKRVAERLKDERST---L---------------------------------PVLTQGEDE---REELLEKF 523 (654)
T ss_pred EEEeccHHHHHHHHHHHhhcCcc---c---------------------------------eeeecCCCc---HHHHHHHH
Confidence 99999999999998888764321 0 011133333 44666667
Q ss_pred hCCCc-eEEEechhhhhccCCCce--EEEEecccccCCCCC----------------cc----ccCCHHHHHHhhcccCC
Q 000114 817 GDGHV-QVLVSTATLAWGVNLPAH--TVIIKGTQIYNPEKG----------------AW----TELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 817 ~~g~i-~VLVaT~tla~GVdlP~v--~vVI~~~~~yd~~~g----------------~~----~~~s~~~~~Qr~GRAGR 873 (2158)
+.+.- -++|+|..++.|||+|+- ..||....||-.+.. .| .......+.|.+||+=|
T Consensus 524 ~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR 603 (654)
T COG1199 524 KASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIR 603 (654)
T ss_pred HHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccc
Confidence 65444 899999999999999986 445555566643321 11 12245689999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHHHHhhcCCCc
Q 000114 874 PQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (2158)
+.+..|..+++-..-....|.+.+...+|
T Consensus 604 -~~~D~G~ivllD~R~~~~~y~~~l~~~l~ 632 (654)
T COG1199 604 -SEDDRGVIVLLDKRYATKRYGKLLLDSLP 632 (654)
T ss_pred -cCCCceEEEEecccchhhhHHHHHHHhCC
Confidence 45668888887766555556665544444
No 281
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.21 E-value=3.1e-11 Score=116.79 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=68.1
Q ss_pred HhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccC
Q 000114 1631 TLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHA 1710 (2158)
Q Consensus 1631 ~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRa 1710 (2158)
..+..+..+||+++..+|..+++.|.+|...|||||+.+++|+|+|.+.+|| ....+.+..+|.|++||+
T Consensus 5 ~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi----------~~~~~~~~~~~~Q~~GR~ 74 (78)
T PF00271_consen 5 KKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVI----------FYDPPWSPEEYIQRIGRA 74 (78)
T ss_dssp HTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEE----------ESSSESSHHHHHHHHTTS
T ss_pred HCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccc----------ccccCCCHHHHHHHhhcC
Confidence 4567899999999999999999999999999999999999999999998888 455678999999999999
Q ss_pred CCCC
Q 000114 1711 SRPL 1714 (2158)
Q Consensus 1711 GR~g 1714 (2158)
||.|
T Consensus 75 ~R~g 78 (78)
T PF00271_consen 75 GRIG 78 (78)
T ss_dssp STTT
T ss_pred CCCC
Confidence 9975
No 282
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=3.5e-09 Score=137.78 Aligned_cols=127 Identities=12% Similarity=0.094 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|--.--. ++.+ -|....||=|||+++.+|+.-....+ ..|-+++..--||..=+..+...+
T Consensus 78 r~ydVQliGglv-Lh~G--~IAEMkTGEGKTLvAtLpayLnAL~G-----------kgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 78 RPYDVQIIGGII-LDLG--SVAEMKTGEGKTITSIAPVYLNALTG-----------KGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CcCchHHHHHHH-HhcC--CeeeecCCCCccHHHHHHHHHHHhcC-----------CceEEEecchhhhhhhHHHHHHHH
Confidence 567777665543 3332 47899999999999999886544433 246677777889988888888888
Q ss_pred ccCCcEEEEEeCCCccCH-hhhccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+....+..... +..-.++|.++|..-+ |.|.-+.. +......+.+.||||||.+
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 899999999988765543 3456899999999875 65554431 2233456789999999965
No 283
>COG4889 Predicted helicase [General function prediction only]
Probab=99.18 E-value=7.8e-11 Score=147.11 Aligned_cols=340 Identities=18% Similarity=0.277 Sum_probs=183.0
Q ss_pred CCCCCHHHHHHHHHHhc---CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1339 FKHFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~---~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
-+.|+|+|++|+.+.++ .++.-=+.+..|+|||..+ |-|...+.. . +++|++|+.+|..|..+.|...-
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~----~--~iL~LvPSIsLLsQTlrew~~~~- 230 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA----A--RILFLVPSISLLSQTLREWTAQK- 230 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh----h--heEeecchHHHHHHHHHHHhhcc-
Confidence 46899999999999865 3444555667899999888 445555443 2 89999999999999999998542
Q ss_pred CCCCcEEEEEcCCcchh------------------h-------hcccCC---cEEEeCHHHHHHHHhhhhccccccceeE
Q 000114 1416 QGLGMRVVELTGETAMD------------------L-------KLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSL 1467 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~------------------~-------~~l~~~---~IIV~TPe~l~~l~r~~~~~~~l~~v~l 1467 (2158)
.+.++...+++|.... . +..+++ -||++|.+.+..+-.. +..-+..++|
T Consensus 231 -~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G~~~fDl 307 (1518)
T COG4889 231 -ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAGLDEFDL 307 (1518)
T ss_pred -CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcCCCCccE
Confidence 2355555555543221 0 011111 5888888776554332 4556888999
Q ss_pred EEecccccccCC--CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHH-H---H-------------HHhccCCCce
Q 000114 1468 FIIDELHLIGGQ--GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD-L---G-------------EWIGATSHGL 1528 (2158)
Q Consensus 1468 lIiDEaH~l~~~--~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~d-l---~-------------~wl~~~~~~i 1528 (2158)
+|.||||+-.+. .|.. ....+|+.. .+.-+..+-+-++||+.-..+ . + .-+|.. ...
T Consensus 308 iicDEAHRTtGa~~a~dd-~saFt~vHs--~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGee-f~r 383 (1518)
T COG4889 308 IICDEAHRTTGATLAGDD-KSAFTRVHS--DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEE-FHR 383 (1518)
T ss_pred EEecchhccccceecccC-cccceeecC--cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchh-hhc
Confidence 999999965321 1110 111111110 000013344667777531110 0 0 000000 000
Q ss_pred EecCCCC-cc--cccEEEEecccccchHHHHHh------------cChH---HHHHHHHhH-------------hcCCCE
Q 000114 1529 FNFPPGV-RP--VPLEIHIQGVDITNFEARMQA------------MTKP---TFTAIVQHA-------------KNEKPA 1577 (2158)
Q Consensus 1529 ~~f~~~~-rp--v~l~~~i~~~~~~~~~~~~~~------------~~k~---~~~~i~~~~-------------~~~~~~ 1577 (2158)
..|...+ |. ..-.+.+...+.......+.. +... +...+...- .+..++
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RA 463 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRA 463 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHH
Confidence 1111100 00 000111111111111111110 0000 001111100 112246
Q ss_pred EEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHH---
Q 000114 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL--- 1654 (2158)
Q Consensus 1578 IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~--- 1654 (2158)
|-||.+.+....++..+-. -++.|.+.+.+. -..+...|....|.|...+|...+.+
T Consensus 464 IaF~k~I~tSK~i~~sFe~------------------Vve~Y~~Elk~d--~~nL~iSi~HvDGtmNal~R~~l~~l~~~ 523 (1518)
T COG4889 464 IAFAKDIKTSKQIAESFET------------------VVEAYDEELKKD--FKNLKISIDHVDGTMNALERLDLLELKNT 523 (1518)
T ss_pred HHHHHhhHHHHHHHHHHHH------------------HHHHHHHHHHhc--CCCceEEeecccccccHHHHHHHHhccCC
Confidence 7788877777777755411 122222222221 11233334444578998888554443
Q ss_pred HHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC-CCceEEEE
Q 000114 1655 FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL-DNSGKCVI 1723 (2158)
Q Consensus 1655 F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~-d~~G~~ii 1723 (2158)
|.....+||---..++.|||+|+..-|| +|+|+. +..+++|-+||..|... .+.|..++
T Consensus 524 ~~~neckIlSNaRcLSEGVDVPaLDsVi----Ff~pr~------smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 524 FEPNECKILSNARCLSEGVDVPALDSVI----FFDPRS------SMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred CCcchheeeccchhhhcCCCccccceEE----EecCch------hHHHHHHHHHHHHHhCcCCccceEEE
Confidence 3567889999999999999999999998 888885 78999999999999532 23455544
No 284
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.17 E-value=6.5e-10 Score=151.68 Aligned_cols=200 Identities=20% Similarity=0.194 Sum_probs=114.3
Q ss_pred ceEEEeccCCCChHHHHHHhccCCCce-----EecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhH-hcCC
Q 000114 1502 IRIVALSTSLANAKDLGEWIGATSHGL-----FNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEK 1575 (2158)
Q Consensus 1502 ~riV~lSATl~n~~dl~~wl~~~~~~i-----~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~-~~~~ 1575 (2158)
..+|++||||.....+..+++...... ...+|..........+. ........ ..+.......+...+ ...+
T Consensus 404 ~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~-~~~~~~~~--~~~~~~~~~~i~~~~~~~~~ 480 (654)
T COG1199 404 ASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVP-TDLPEPRE--PELLAKLAAYLREILKASPG 480 (654)
T ss_pred CcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEecc-ccCCCCCC--hHHHHHHHHHHHHHHhhcCC
Confidence 448889999988777776666543211 11111111111111111 11111110 011122222222221 2345
Q ss_pred CEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHH
Q 000114 1576 PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALF 1655 (2158)
Q Consensus 1576 ~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F 1655 (2158)
+++||++|.+..+.++..+..... .-....++.. .+..+++.|
T Consensus 481 ~~lvlF~Sy~~l~~~~~~~~~~~~----------------------------------~~~v~~q~~~---~~~~~l~~f 523 (654)
T COG1199 481 GVLVLFPSYEYLKRVAERLKDERS----------------------------------TLPVLTQGED---EREELLEKF 523 (654)
T ss_pred CEEEEeccHHHHHHHHHHHhhcCc----------------------------------cceeeecCCC---cHHHHHHHH
Confidence 899999999988888866532100 0012333333 344667777
Q ss_pred HcCCc-eEEEecCccccccCCCc---cEEEEecceeecCC-------------------CCcCcCCCHHHHHHhhccCCC
Q 000114 1656 EAGKI-KVCVMSSSMCWGVPLTA---HLVVVMGTQYYDGQ-------------------ENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1656 ~~g~i-~VLVaT~~la~Gvdlp~---~~vVI~gt~~yd~~-------------------~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
..+.- .++|+|..+..|||+|+ ..|||.|.++-.+. ...+.+..+..+.|.+||+-|
T Consensus 524 ~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR 603 (654)
T COG1199 524 KASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIR 603 (654)
T ss_pred HHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccc
Confidence 76544 89999999999999995 46677676653222 123444458889999999999
Q ss_pred CCCCCceEEEEEecCChHHHHHHHhhCCCc
Q 000114 1713 PLLDNSGKCVILCHAPRKEYYKKFLYDAFP 1742 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~~~~~~~k~l~~~~p 1742 (2158)
.- +..|.++++-..-....|.+.+.+.+|
T Consensus 604 ~~-~D~G~ivllD~R~~~~~y~~~l~~~l~ 632 (654)
T COG1199 604 SE-DDRGVIVLLDKRYATKRYGKLLLDSLP 632 (654)
T ss_pred cC-CCceEEEEecccchhhhHHHHHHHhCC
Confidence 64 778888888776665667777765554
No 285
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.17 E-value=3.9e-09 Score=142.67 Aligned_cols=63 Identities=21% Similarity=0.138 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHh---cC-----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLY---NT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~---~~-----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
++++-|.+....++ .+ +..++|-||||+|||++|++|++..... .+. ++||-+.|++|-+|..
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--~~k--~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--EKK--KLVISTATVALQEQLV 95 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--cCC--eEEEEcCCHHHHHHHH
Confidence 68999999666654 44 3668899999999999999999865554 244 8999999999999986
No 286
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.16 E-value=3.5e-09 Score=138.91 Aligned_cols=127 Identities=17% Similarity=0.104 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|--..-. +. +.-|+.+.||.|||+++.+|+.-....+ ..|-+|+++.-||..-++.+...+
T Consensus 76 r~ydvQlig~l~-L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~G-----------~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 76 RHFDVQLIGGLV-LN--DGKIAEMKTGEGKTLVATLPAYLNALTG-----------KGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred CCCchHhhhhHh-hc--CCccccccCCCCchHHHHHHHHHHHhcC-----------CceEEEeCCHHHHHHHHHHHHHHH
Confidence 366777655432 22 2378999999999999999985443332 258899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+...++.+...+ ..-.++|+++|..-+ |.|.-+.. .......+.+.||||||.+
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 9999999999887765543 355789999999764 55544331 1223456789999999965
No 287
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=7.9e-09 Score=135.08 Aligned_cols=127 Identities=16% Similarity=0.091 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.+.++|-..--.+ +. . -|..+.||-|||+++.+|+.-....+ ..|-+|++.--||..=++.+...+
T Consensus 85 r~ydVQliGgl~L-h~-G-~IAEM~TGEGKTL~atlpaylnAL~G-----------kgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 85 RHFDVQLIGGMVL-HE-G-QIAEMKTGEGKTLVATLPSYLNALTG-----------KGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred CcchhHHHhhhhh-cC-C-ceeeecCCCChhHHHHHHHHHHhhcC-----------CCeEEEeCCHHHHHhHHHHHHHHH
Confidence 4566775544333 22 2 68899999999999999987665543 258899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+...++.+...+ ..-.++|+++|+..+ |.|.-+.. .......+.+.||||||.+
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 9999999999887765543 355899999999886 54443321 1234567889999999965
No 288
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.07 E-value=1.2e-08 Score=127.95 Aligned_cols=328 Identities=19% Similarity=0.237 Sum_probs=186.4
Q ss_pred CCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
-.++++|.+-+..+ ++.+-|.|+.-.-|-|||+..+ +.+-.+.......| --+|++|.-.| ..+.++|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~~~~G-------PfLVi~P~StL-~NW~~Ef 236 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRKGIPG-------PFLVIAPKSTL-DNWMNEF 236 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhcCCCC-------CeEEEeeHhhH-HHHHHHH
Confidence 37899999887654 4555689999999999998653 33333333221112 35889998766 5677888
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le 644 (2158)
+++.. +++|..++||....... ....+|+|||.|.. .+.. ....--..+++||||+|++-...
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~---i~dk-~~lk~~~W~ylvIDEaHRiKN~~----- 305 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIA---IKDK-SFLKKFNWRYLVIDEAHRIKNEK----- 305 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHH---HhhH-HHHhcCCceEEEechhhhhcchh-----
Confidence 87654 67899999987432221 23789999999963 2211 00111125899999999986532
Q ss_pred HHHHHHHHHHhhccccccEEEEccccC--C------------------hHHHHHHHhccccCce----EEecCCcccc--
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSATLP--N------------------YEDVALFLRVNLEKGL----FYFDNSYRPV-- 698 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSATlp--n------------------~~dv~~~l~~~~~~~~----~~f~~~~rpv-- 698 (2158)
+.+.++++.+. ...-+++|.|.- | .+++..|+......+. .......+|.
T Consensus 306 s~L~~~lr~f~----~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlL 381 (971)
T KOG0385|consen 306 SKLSKILREFK----TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLL 381 (971)
T ss_pred hHHHHHHHHhc----ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHH
Confidence 23334443322 233477888821 2 3455555543110000 0000000000
Q ss_pred ------------cce--eEEEeeccC-------------------Ch--hHHH-HHh---hHH-----------------
Q 000114 699 ------------PLS--QQYIGIQVK-------------------KP--LQRF-QLM---NDL----------------- 722 (2158)
Q Consensus 699 ------------~l~--~~~~~~~~~-------------------~~--~~~~-~~l---~~~----------------- 722 (2158)
|.. ..+++.... .. ..++ +.| .+.
T Consensus 382 RR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyt 461 (971)
T KOG0385|consen 382 RRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYT 461 (971)
T ss_pred HHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCC
Confidence 000 111111100 00 0000 000 000
Q ss_pred -------------HHHHHHHH--hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcc
Q 000114 723 -------------CYEKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2158)
Q Consensus 723 -------------~~~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 787 (2158)
+.++++.. ..+++||||..=.+ +-..|.+.+.
T Consensus 462 tdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~----mLDILeDyc~----------------------------- 508 (971)
T KOG0385|consen 462 TDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTR----MLDILEDYCM----------------------------- 508 (971)
T ss_pred cchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHH----HHHHHHHHHH-----------------------------
Confidence 11222221 12566777753221 2222222211
Q ss_pred hhhhhccCCeEEecCCCCHHHHHHHHHHHhCC---CceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHH
Q 000114 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG---HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 788 ~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g---~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
+-.+...-.-|.++.++|...++.|... ..-.|++|-+.+-|||+-+.++||-++.-|+|.. =
T Consensus 509 ----~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~----------D 574 (971)
T KOG0385|consen 509 ----LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQV----------D 574 (971)
T ss_pred ----hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchh----------h
Confidence 1122333448999999999999999754 3456899999999999999999999777777663 5
Q ss_pred HHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 865 MQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
+|.+-||-|-|..+.-.+|.+++.+..+
T Consensus 575 LQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 575 LQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred hHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 6777888887777777888888876543
No 289
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.05 E-value=3.3e-08 Score=124.14 Aligned_cols=341 Identities=18% Similarity=0.224 Sum_probs=193.1
Q ss_pred CCCCHHHHHHHHH---HhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1340 KHFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~---l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
..++++|.+-++- +++.+-|.|+.-.-|=|||+.. ++++.++.... ..| .-+||+|.-.|- .+.++++ +|.
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~G--PfLVi~P~StL~-NW~~Ef~-rf~ 240 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPG--PFLVIAPKSTLD-NWMNEFK-RFT 240 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCC--CeEEEeeHhhHH-HHHHHHH-HhC
Confidence 4788999887665 5677888999999999999876 45555554422 233 578999986654 4555565 455
Q ss_pred CCCCcEEEEEcCCcchhhh----ccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHH
Q 000114 1416 QGLGMRVVELTGETAMDLK----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~is 1489 (2158)
+ ++++..+.|+...... .+. .-+|+|+|.|....--.- ..--..+++||||||+|-... +
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~----lk~~~W~ylvIDEaHRiKN~~--------s 306 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSF----LKKFNWRYLVIDEAHRIKNEK--------S 306 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHH----HhcCCceEEEechhhhhcchh--------h
Confidence 4 7899999998754422 222 349999999986432111 111346899999999997543 2
Q ss_pred HHHHHHhhcCCCceEEEeccCCCC-------------------hHHHHHHhccCCCceEecCCCCcccccEEEEeccccc
Q 000114 1490 RMRYIASQVENKIRIVALSTSLAN-------------------AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT 1550 (2158)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n-------------------~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~ 1550 (2158)
++..+.+.+...-|+++..+++.| ++++..|+..... ....
T Consensus 307 ~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~--------------------~~~~ 366 (971)
T KOG0385|consen 307 KLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC--------------------EGDQ 366 (971)
T ss_pred HHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc--------------------ccCH
Confidence 222333334445565554444444 2344555543210 0000
Q ss_pred chHHHHHhcChHHH-----HHHHHhHhcCCCEEEEecChHH--------------------------HHHHHHHHHhhcc
Q 000114 1551 NFEARMQAMTKPTF-----TAIVQHAKNEKPALVFVPSRKY--------------------------VRLTAVDLMTYSS 1599 (2158)
Q Consensus 1551 ~~~~~~~~~~k~~~-----~~i~~~~~~~~~~IVFv~sr~~--------------------------~~~~a~~L~~~~~ 1599 (2158)
....++....+|.. ..+...+.+.+-++|||+-... -..+...|...|.
T Consensus 367 e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccn 446 (971)
T KOG0385|consen 367 ELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCN 446 (971)
T ss_pred HHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcC
Confidence 01111111111111 1111111223334555543222 2233333333332
Q ss_pred cC----Cccc-ccccCCC--------cccchhhHhhhhH------------------HHHHHHhcccEEEecCCCCHHHH
Q 000114 1600 MD----GDQK-SAFLLWP--------AEEVEPFIDNIQE------------------EMLKATLRHGVGYLHEGLNKTDQ 1648 (2158)
Q Consensus 1600 ~~----~~~~-~~~l~~~--------~~~l~~~~~~i~d------------------~~L~~~l~~gv~~~H~~l~~~dR 1648 (2158)
-. +... ..|.... -.-+..++.++.+ +.....-++...-+.|.++.++|
T Consensus 447 HPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR 526 (971)
T KOG0385|consen 447 HPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEER 526 (971)
T ss_pred CccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHH
Confidence 10 0000 0011000 0012222222211 11122234556777899999999
Q ss_pred HHHHHHHHcC---CceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1649 EVVSALFEAG---KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1649 ~~v~~~F~~g---~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
...++.|... +.-.|++|.+.+-|||+-+..+|| .|| .|.++..=+|-+-||.|-|..+.-.++-++
T Consensus 527 ~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVI----lyD------SDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLi 596 (971)
T KOG0385|consen 527 EDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVI----LYD------SDWNPQVDLQAMDRAHRIGQKKPVVVYRLI 596 (971)
T ss_pred HHHHHhcCCCCcceEEEEEeccccccccccccccEEE----Eec------CCCCchhhhHHHHHHHhhCCcCceEEEEEe
Confidence 9999999854 456899999999999999877777 344 444566668888899998878888889888
Q ss_pred cCCh
Q 000114 1726 HAPR 1729 (2158)
Q Consensus 1726 ~~~~ 1729 (2158)
....
T Consensus 597 tent 600 (971)
T KOG0385|consen 597 TENT 600 (971)
T ss_pred ccch
Confidence 8874
No 290
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=2.5e-08 Score=130.01 Aligned_cols=128 Identities=20% Similarity=0.119 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.+.++|--.--.+ +.+ -|.-+.||=|||+++.+|+.-.... +. .+-+++..--||..=++.+. .+-..+|+
T Consensus 78 r~ydVQliGglvL-h~G--~IAEMkTGEGKTLvAtLpayLnAL~---Gk--gVhVVTvNdYLA~RDae~mg-~vy~fLGL 148 (925)
T PRK12903 78 RPYDVQIIGGIIL-DLG--SVAEMKTGEGKTITSIAPVYLNALT---GK--GVIVSTVNEYLAERDAEEMG-KVFNFLGL 148 (925)
T ss_pred CcCchHHHHHHHH-hcC--CeeeecCCCCccHHHHHHHHHHHhc---CC--ceEEEecchhhhhhhHHHHH-HHHHHhCC
Confidence 4555555444333 323 4789999999999999988644433 33 46677777788876666555 44445799
Q ss_pred EEEEEcCCcchh-hhcccCCcEEEeCHHHHH-HHHhhh----hccccccceeEEEeccccccc
Q 000114 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRW----KQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1421 ~v~~ltG~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~----~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+....+.... .+..-.++|.++|...+- +.+|-. ......+.+.+.||||+|.++
T Consensus 149 svG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 149 SVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred ceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 999998876554 445557899999988762 244421 112234668899999999654
No 291
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.04 E-value=2.5e-08 Score=131.15 Aligned_cols=127 Identities=19% Similarity=0.082 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000114 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~ 1421 (2158)
++++|--. .+.- .+.-|+.+.||.|||+++.+|+.-.... +. .+-+|+++..||.+-++.+.. +-..+|++
T Consensus 77 ~ydvQlig--~l~L-~~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~--~VhVvT~NdyLA~RD~e~m~p-vy~~LGLs 147 (870)
T CHL00122 77 HFDVQLIG--GLVL-NDGKIAEMKTGEGKTLVATLPAYLNALT---GK--GVHIVTVNDYLAKRDQEWMGQ-IYRFLGLT 147 (870)
T ss_pred CCchHhhh--hHhh-cCCccccccCCCCchHHHHHHHHHHHhc---CC--ceEEEeCCHHHHHHHHHHHHH-HHHHcCCc
Confidence 44555444 4322 2336899999999999999988533322 33 688999999999998887774 44457999
Q ss_pred EEEEcCCcchh-hhcccCCcEEEeCHHHHH-HHHhhhh----ccccccceeEEEeccccccc
Q 000114 1422 VVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRWK----QRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1422 v~~ltG~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~~----~~~~l~~v~llIiDEaH~l~ 1477 (2158)
|+...++.+.. .+..-.++|+++|...+- +.+|-.. .....+.+.+.||||||.++
T Consensus 148 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred eeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99998877665 344556799999987552 2333211 11234568899999999553
No 292
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.04 E-value=1e-09 Score=138.31 Aligned_cols=338 Identities=17% Similarity=0.160 Sum_probs=203.3
Q ss_pred HHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEE
Q 000114 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584 (2158)
Q Consensus 505 ~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l 584 (2158)
-.+...++.+++-+.||+|||..+..-||..+..+... ..+-+++-.|++--+.-+++++.+-- +-.++..
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g------~~~na~v~qprrisaisiaerva~er---~e~~g~t 457 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG------ASFNAVVSQPRRISAISLAERVANER---GEEVGET 457 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc------ccccceeccccccchHHHHHHHHHhh---HHhhccc
Confidence 34455667789999999999999999999998875431 33468888999998888888776421 1122222
Q ss_pred eCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhcccccc
Q 000114 585 SGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIR 662 (2158)
Q Consensus 585 ~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~r 662 (2158)
.|-...-.. ....--|..||-+ .+.|..- .-+..+.++|+||+|.-- +--.++..+++-+..+.+.++
T Consensus 458 vgy~vRf~Sa~prpyg~i~fctvg---vllr~~e--~glrg~sh~i~deiherd-----v~~dfll~~lr~m~~ty~dl~ 527 (1282)
T KOG0921|consen 458 CGYNVRFDSATPRPYGSIMFCTVG---VLLRMME--NGLRGISHVIIDEIHERD-----VDTDFVLIVLREMISTYRDLR 527 (1282)
T ss_pred ccccccccccccccccceeeeccc---hhhhhhh--hcccccccccchhhhhhc-----cchHHHHHHHHhhhccchhhh
Confidence 221110000 0123458889988 4444432 345568899999999631 222233344455556778899
Q ss_pred EEEEccccCChHHHHHHHhccccCce------------------------------EEecCCccccccee--EEEe-ecc
Q 000114 663 LVGLSATLPNYEDVALFLRVNLEKGL------------------------------FYFDNSYRPVPLSQ--QYIG-IQV 709 (2158)
Q Consensus 663 iv~lSATlpn~~dv~~~l~~~~~~~~------------------------------~~f~~~~rpv~l~~--~~~~-~~~ 709 (2158)
++++|||+ |.+-+..|++.-+...+ ..+...+.+.+... .-.+ ...
T Consensus 528 v~lmsatI-dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~d 606 (1282)
T KOG0921|consen 528 VVLMSATI-DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCD 606 (1282)
T ss_pred hhhhhccc-chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccC
Confidence 99999997 44556666654321100 00111111111000 0000 000
Q ss_pred CCh-hHHHHHhh--------HHHHHHHHHHhC----CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHH
Q 000114 710 KKP-LQRFQLMN--------DLCYEKVVAVAG----KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (2158)
Q Consensus 710 ~~~-~~~~~~l~--------~~~~~~i~~~~~----~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 776 (2158)
... .....+|. .-+.+++..... .+-++||.+.-.....+..++.......
T Consensus 607 d~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg---------------- 670 (1282)
T KOG0921|consen 607 PSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFG---------------- 670 (1282)
T ss_pred hhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhc----------------
Confidence 000 00000000 001122222111 4678999999888888877776542211
Q ss_pred HHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCC----
Q 000114 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE---- 852 (2158)
Q Consensus 777 l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~---- 852 (2158)
++-.+-+.-.|+.+...++..|.+....|..+++++|.++...+.+-++..||.....|-.-
T Consensus 671 --------------~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~ 736 (1282)
T KOG0921|consen 671 --------------QANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSH 736 (1282)
T ss_pred --------------cchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccc
Confidence 11123344459999999999999999999999999999999999999988887754433111
Q ss_pred ----CCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 853 ----KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 853 ----~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
.....+.|.....||.||+||. +.|.|..+|+.-..+.+.
T Consensus 737 nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~lcs~arF~~l~ 780 (1282)
T KOG0921|consen 737 NNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHLCSRARFEALE 780 (1282)
T ss_pred cceeeeeeecccccchHhhcccCcee---cccccccccHHHHHHHHH
Confidence 1123677888999999999995 578899888875554443
No 293
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=4.3e-08 Score=133.85 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=60.7
Q ss_pred CCCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
.|..++|.|.+.+..+ +..++++++.||||+|||++.+.+.+....... ...||+|.+.|.+=..|..+
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------EVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------ccccEEEEcccchHHHHHHH
Confidence 4778899999988765 456778999999999999999999998766432 23489999999988888888
Q ss_pred HHHhh
Q 000114 569 NLSNR 573 (2158)
Q Consensus 569 ~~~~~ 573 (2158)
++++.
T Consensus 79 Elk~~ 83 (705)
T TIGR00604 79 ELRKL 83 (705)
T ss_pred HHHhh
Confidence 88773
No 294
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=2.8e-08 Score=130.11 Aligned_cols=112 Identities=17% Similarity=0.110 Sum_probs=82.4
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh-hhcccC
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLLEK 1438 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~-~~~l~~ 1438 (2158)
-|..+.||-|||+++.+|+.-.... +. .+-+|+++.-||..=++.+. .+-..+|++|+...++.... .+..-.
T Consensus 101 ~IAEM~TGEGKTL~atlpaylnAL~---Gk--gVhVVTvNdYLA~RDae~m~-~vy~~LGLtvg~i~~~~~~~err~aY~ 174 (939)
T PRK12902 101 QIAEMKTGEGKTLVATLPSYLNALT---GK--GVHVVTVNDYLARRDAEWMG-QVHRFLGLSVGLIQQDMSPEERKKNYA 174 (939)
T ss_pred ceeeecCCCChhHHHHHHHHHHhhc---CC--CeEEEeCCHHHHHhHHHHHH-HHHHHhCCeEEEECCCCChHHHHHhcC
Confidence 5889999999999999988754443 33 57899999999998887666 44455799999998876654 445567
Q ss_pred CcEEEeCHHHH-HHHHhh-h---hccccccceeEEEeccccccc
Q 000114 1439 GQIIISTPEKW-DALSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~-~---~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+||+++|+..+ .+.+|- . ......+.+.+.||||||.++
T Consensus 175 ~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 175 CDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 89999999887 112221 1 112245678899999999653
No 295
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.99 E-value=3.9e-09 Score=133.23 Aligned_cols=417 Identities=17% Similarity=0.155 Sum_probs=243.4
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
..++.++|-+.||+|||.-++--||..+.+........+++-.|++-.+..+++++.+.-+...| ...|-...-..
T Consensus 391 ~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g----~tvgy~vRf~S 466 (1282)
T KOG0921|consen 391 AENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVG----ETCGYNVRFDS 466 (1282)
T ss_pred hcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhc----ccccccccccc
Confidence 34677999999999999999999999999865555556888899998888888877654433222 22222111111
Q ss_pred cc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1435 LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1435 ~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
.. ...-|..+|-+-+....- .-+..+.++|+||+|... -.+..+..++.-|..+ -..++++++|||+
T Consensus 467 a~prpyg~i~fctvgvllr~~e-----~glrg~sh~i~deiherd-v~~dfll~~lr~m~~t----y~dl~v~lmsatI- 535 (1282)
T KOG0921|consen 467 ATPRPYGSIMFCTVGVLLRMME-----NGLRGISHVIIDEIHERD-VDTDFVLIVLREMIST----YRDLRVVLMSATI- 535 (1282)
T ss_pred cccccccceeeeccchhhhhhh-----hcccccccccchhhhhhc-cchHHHHHHHHhhhcc----chhhhhhhhhccc-
Confidence 11 233799999887554432 246778999999999763 2344444455445443 3578889999998
Q ss_pred ChHHHHHHhccCCCceE-------------------ecCCCCcccccEEEE-ecc---------------cccchHHH-H
Q 000114 1513 NAKDLGEWIGATSHGLF-------------------NFPPGVRPVPLEIHI-QGV---------------DITNFEAR-M 1556 (2158)
Q Consensus 1513 n~~dl~~wl~~~~~~i~-------------------~f~~~~rpv~l~~~i-~~~---------------~~~~~~~~-~ 1556 (2158)
|.+-+..+++.-+..+. .|-|. ++.+..... ..+ ..+.+... .
T Consensus 536 dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~-~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~ 614 (1282)
T KOG0921|consen 536 DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPS-EPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTR 614 (1282)
T ss_pred chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCC-CcCccchhhcccccCchhhhcccccccccChhhcchhh
Confidence 55556666654322110 00000 010100000 000 00000000 0
Q ss_pred HhcC--------hHHHHHHHHhHh---cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhH
Q 000114 1557 QAMT--------KPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE 1625 (2158)
Q Consensus 1557 ~~~~--------k~~~~~i~~~~~---~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d 1625 (2158)
.+|. -.+.+++..++. -.+-++||.+.-.....+...+..+
T Consensus 615 ~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~---------------------------- 666 (1282)
T KOG0921|consen 615 TAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEH---------------------------- 666 (1282)
T ss_pred hhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhh----------------------------
Confidence 0111 011222222211 1345788888776665555444221
Q ss_pred HHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEeccee---ecCC----CC-cCcC
Q 000114 1626 EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQY---YDGQ----EN-AHTD 1697 (2158)
Q Consensus 1626 ~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~---yd~~----~~-~~~~ 1697 (2158)
....+.-.+.+...|+.+...+++.|.+....|..+++++|.++...+.+.++..||....- +..+ .+ ..+.
T Consensus 667 ~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw 746 (1282)
T KOG0921|consen 667 QEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVW 746 (1282)
T ss_pred hhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeec
Confidence 22333445668889999999999999999999999999999999999999987777633221 1111 11 2456
Q ss_pred CCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHh
Q 000114 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWT 1777 (2158)
Q Consensus 1698 ~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t 1777 (2158)
.+.....|+.||+||. +.|.|+.+|.....+.+..-... .+..+-..|++.- + ..+...+-.
T Consensus 747 ~sktn~eqr~gr~grv---R~G~~f~lcs~arF~~l~~~~t~----------em~r~plhemalT-i----kll~l~SI~ 808 (1282)
T KOG0921|consen 747 ASKTNLEQRKGRAGRV---RPGFCFHLCSRARFEALEDHGTA----------EMFRTPLHEIALT-I----KLLRLGSIG 808 (1282)
T ss_pred ccccchHhhcccCcee---cccccccccHHHHHHHHHhcCcH----------hhhcCccHHHHhh-H----HHHHhhhHH
Confidence 6788999999999994 79999999987654443322211 0111111111110 0 001111212
Q ss_pred hhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHh
Q 000114 1778 FMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSS 1853 (2158)
Q Consensus 1778 ~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~ 1853 (2158)
.|.-.-.+.|.| +.|+.+-..|...+|....+ ..|++|+..+...+.+.-..++..
T Consensus 809 ~fl~kal~~~p~----------------dav~e~e~~l~~m~~ld~n~----elt~lg~~la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 809 EFLGKALQPPPY----------------DAVIEAEAVLREMGALDAND----ELTPLGRMLARLPIEPRIGKMMIL 864 (1282)
T ss_pred HHHhhccCCCch----------------hhccCchHHHHHhhhhhccC----cccchhhhhhhccCcccccceeee
Confidence 222222233333 56666677788888886544 357889999999998887766654
No 296
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.97 E-value=1.3e-07 Score=123.61 Aligned_cols=366 Identities=17% Similarity=0.129 Sum_probs=207.9
Q ss_pred CCCCHHHHHHHHHHHcC---C------CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 494 TQLNRVQSRVYKSALSS---A------DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~---~------~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
..++|+|.+.+.-++.. . .-.|+.=..|+|||+..+-.|.-.+.+++.... ---|.|||+|. .|+.
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~----~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP----LINKPLVVAPS-SLVN 311 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc----cccccEEEccH-HHHH
Confidence 47899999999876532 1 125666778999999887777667776654211 11379999995 8999
Q ss_pred HHHHHHHhhcccCCcEEEEEeCCCccCH---h-------hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 565 EVVGNLSNRLQMYDVKVRELSGDQTLTR---Q-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~---~-------~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
-+.++|.+++....+.+..+.|...... + ..-.+.|++.+.|.+....+. .....++++|+||.|.
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCCC
Confidence 9999999988765677777777665310 0 112456778888876322222 3456689999999999
Q ss_pred cccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc---cccCceEEecCCcccc----cceeEE--E
Q 000114 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV---NLEKGLFYFDNSYRPV----PLSQQY--I 705 (2158)
Q Consensus 635 l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~---~~~~~~~~f~~~~rpv----~l~~~~--~ 705 (2158)
+-......+.++ +++ .-.|-|+||.|+- ..++.++... .. .+..--..+++-. .+...- .
T Consensus 388 lkN~~s~~~kaL-~~l--------~t~rRVLLSGTp~-QNdl~EyFnlL~fvr-P~~Lgs~~sf~k~~~~~i~~~~~~~~ 456 (776)
T KOG0390|consen 388 LKNSDSLTLKAL-SSL--------KTPRRVLLTGTPI-QNDLKEYFNLLDFVR-PGFLGSISSFKKKFEIPILRGRDADA 456 (776)
T ss_pred ccchhhHHHHHH-Hhc--------CCCceEEeeCCcc-cccHHHHHHHHhhcC-hhhccchHHHHHHhhcccccccCCCc
Confidence 865544333332 222 2345689999954 2344444432 11 1111111111110 000000 0
Q ss_pred eeccCChhHHHHHhhHHHHHH--------HHHHhCC-CeEEEEecChHHHHHHHHHHHHHh---------hcc-------
Q 000114 706 GIQVKKPLQRFQLMNDLCYEK--------VVAVAGK-HQVLIFVHSRKETAKTARAIRDTA---------LEN------- 760 (2158)
Q Consensus 706 ~~~~~~~~~~~~~l~~~~~~~--------i~~~~~~-~~vLVFv~sr~~~~~~a~~L~~~~---------~~~------- 760 (2158)
.-.......+++.|..++-.. +.+.+++ .-.+|||+.-..=..++..|.+.. ...
T Consensus 457 s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~ 536 (776)
T KOG0390|consen 457 SEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKL 536 (776)
T ss_pred chhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHH
Confidence 000001122334344333222 2233333 357889987655555555444420 000
Q ss_pred cccccccc------------------------cC--chh--H------HHHHhhhhcc-------Cc--------chhhh
Q 000114 761 DTLGRFLK------------------------ED--SVS--R------EILQSHTDMV-------KS--------NDLKD 791 (2158)
Q Consensus 761 ~~~~~~~~------------------------~~--~~~--~------~~l~~~~~~~-------~~--------~~l~~ 791 (2158)
..-..++. .+ ..+ . .++....+.. .+ ..+..
T Consensus 537 cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~ 616 (776)
T KOG0390|consen 537 CNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCR 616 (776)
T ss_pred hcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHh
Confidence 00000000 00 000 0 0000000000 00 11222
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCc--e-EEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhh
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHV--Q-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i--~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2158)
...+.+...||.|+..+|..+.+.|.+..- . .|.+|-+.+.|+||=+.+-||.++..|||. .=.|.+
T Consensus 617 ~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa----------~d~QAm 686 (776)
T KOG0390|consen 617 WRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPA----------VDQQAM 686 (776)
T ss_pred hcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCch----------hHHHHH
Confidence 335678888999999999999999986432 3 457788999999999998888877777765 468999
Q ss_pred cccCCCCCCCccEEEEEcCCC
Q 000114 869 GRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~ 889 (2158)
+||=|+|.-+.-.+|-+....
T Consensus 687 aR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 687 ARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HHhccCCCcceEEEEEeecCC
Confidence 999999976666666665553
No 297
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.97 E-value=1.1e-07 Score=114.16 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=101.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
+..|-|+|.+-+..+++.+..+++.-.-|-|||..|+ +|....... .-.++|+|- +|-..+.+.+.+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aIA~yyraE-----------wplliVcPA-svrftWa~al~r 262 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AIARYYRAE-----------WPLLIVCPA-SVRFTWAKALNR 262 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HHHHHHhhc-----------CcEEEEecH-HHhHHHHHHHHH
Confidence 3467899999999999998899999999999999885 444443321 148889996 455667777777
Q ss_pred hcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHH
Q 000114 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~ 652 (2158)
++... ..+....+..+.-...-....|.|.+.+.+..+-.... -...++||+||.|+|.+.+......++.-
T Consensus 263 ~lps~-~pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr~Ka~~dl--- 334 (689)
T KOG1000|consen 263 FLPSI-HPIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKRTKAATDL--- 334 (689)
T ss_pred hcccc-cceEEEecccCCccccccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhhhhhhhhH---
Confidence 76543 23444444443322222345688888887644433222 22368999999999987554333333322
Q ss_pred HHhhccccccEEEEccccC
Q 000114 653 QIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 653 ~~~~~~~~~riv~lSATlp 671 (2158)
...-.++|+||.|..
T Consensus 335 ----lk~akhvILLSGTPa 349 (689)
T KOG1000|consen 335 ----LKVAKHVILLSGTPA 349 (689)
T ss_pred ----HHHhhheEEecCCcc
Confidence 234567899999943
No 298
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.95 E-value=1.6e-09 Score=105.50 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=64.3
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
...+..+||+|+..+|..+++.|++|...|||+|+++++|+|+|.++.||. ++++ .+..+|.||+||+||
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~~~------~~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII----YDLP------WSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE----eCCC------CCHHHHHHhhccccc
Confidence 466889999999999999999999999999999999999999999988887 4443 277789999999999
Q ss_pred CC
Q 000114 874 PQ 875 (2158)
Q Consensus 874 ~g 875 (2158)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 64
No 299
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.94 E-value=1.7e-07 Score=122.57 Aligned_cols=360 Identities=17% Similarity=0.125 Sum_probs=187.1
Q ss_pred CCCCCHHHHHHHHHHhcC---C------CcEEEEccCCchhHHHHHHHHHHHHHhhcCC-----CceEEEEEcccHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNT---D------DNVLVAAPTGSGKTICSEFAILRNHQKASET-----GVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~---~------~nvli~ApTGSGKTl~a~l~il~~l~~~~~~-----~~~~~v~IaP~raLa~ 1404 (2158)
...++|+|++.|.-++.. . .-.|++=..|+|||+...-.|...+.+ .+. . +++||+|. .|+.
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-~P~~~~~~~--k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-FPQAKPLIN--KPLVVAPS-SLVN 311 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh-CcCcccccc--ccEEEccH-HHHH
Confidence 357899999999998751 1 126677778999999885555555555 455 4 88999996 5655
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcch-h--hh-------cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccc
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAM-D--LK-------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~-~--~~-------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
-++++|.+..+. ..+....+.|.... . .+ ..-...|.+.+-|.+....+. .....++++|+||.|
T Consensus 312 nWkkEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 312 NWKKEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCC
Confidence 555555544332 12344445554442 1 00 111225777777776544433 346789999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC-C-hHHHHHHhccCCCceEecCCCCcccccEEEEeccccc--
Q 000114 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA-N-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-- 1550 (2158)
Q Consensus 1475 ~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~-n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~-- 1550 (2158)
.+-...+ .+......+.. .|-|+||.|+- | ..++-.-|+....+++.-....+-.--.....+-+..
T Consensus 387 rlkN~~s--------~~~kaL~~l~t-~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 387 RLKNSDS--------LTLKALSSLKT-PRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred Cccchhh--------HHHHHHHhcCC-CceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 8865432 22222223333 45577788863 2 3333332322211111100000000000000000000
Q ss_pred ----chHHH---HHhcChHH-----HHHHHHhHhcCC-CEEEEecChHHHHHHHHHHHhh--------------------
Q 000114 1551 ----NFEAR---MQAMTKPT-----FTAIVQHAKNEK-PALVFVPSRKYVRLTAVDLMTY-------------------- 1597 (2158)
Q Consensus 1551 ----~~~~~---~~~~~k~~-----~~~i~~~~~~~~-~~IVFv~sr~~~~~~a~~L~~~-------------------- 1597 (2158)
....+ +..|.... -..+..+ -|+. -.+|||+.-..=..+...|...
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~-LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~ 536 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKY-LPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKL 536 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhh-CCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHH
Confidence 00111 11111100 0111122 2333 3788888654444444433332
Q ss_pred cc---c---CCc--ccccccC-----------CCcc---------cchhhHhhhhH-------------------HHHHH
Q 000114 1598 SS---M---DGD--QKSAFLL-----------WPAE---------EVEPFIDNIQE-------------------EMLKA 1630 (2158)
Q Consensus 1598 ~~---~---~~~--~~~~~l~-----------~~~~---------~l~~~~~~i~d-------------------~~L~~ 1630 (2158)
|. . .+. ...++.. .... .+...+..+.. +.+..
T Consensus 537 cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~ 616 (776)
T KOG0390|consen 537 CNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCR 616 (776)
T ss_pred hcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHh
Confidence 00 0 000 0000000 0000 00111111110 12333
Q ss_pred HhcccEEEecCCCCHHHHHHHHHHHHcCCc--e-EEEecCccccccCCC-ccEEEEecceeecCCCCcCcCCCHHHHHHh
Q 000114 1631 TLRHGVGYLHEGLNKTDQEVVSALFEAGKI--K-VCVMSSSMCWGVPLT-AHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706 (2158)
Q Consensus 1631 ~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i--~-VLVaT~~la~Gvdlp-~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr 1706 (2158)
..++.+..+||.|+..+|..+.+.|.+..- . .|.+|.+.+.|||+- +-++|+ .+.+.+++.=.|-
T Consensus 617 ~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil-----------~D~dWNPa~d~QA 685 (776)
T KOG0390|consen 617 WRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL-----------FDPDWNPAVDQQA 685 (776)
T ss_pred hcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE-----------eCCCCCchhHHHH
Confidence 347789999999999999999999986432 3 556677889999987 455555 3445567777999
Q ss_pred hccCCCCCCCCceEEEEEecCC
Q 000114 1707 MGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1707 ~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
++||=|+|..+.-.+|-|....
T Consensus 686 maR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 686 MARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HHHhccCCCcceEEEEEeecCC
Confidence 9999999977777777666654
No 300
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.84 E-value=7.5e-09 Score=100.73 Aligned_cols=72 Identities=28% Similarity=0.364 Sum_probs=63.9
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
+..+..+||+++..+|..+++.|.+|...|||+|+++++|+|+|.+..|| ....+++..+|.||+||++|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi----------~~~~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVI----------IYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEE----------EeCCCCCHHHHHHhhccccc
Confidence 66799999999999999999999999999999999999999999766665 12346789999999999999
Q ss_pred CC
Q 000114 1713 PL 1714 (2158)
Q Consensus 1713 ~g 1714 (2158)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 64
No 301
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.83 E-value=2.5e-07 Score=120.29 Aligned_cols=303 Identities=14% Similarity=0.161 Sum_probs=162.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
+.-.+|-||.|||||.+..-++-..+.. .+.++++|+.+++|+.+...+|+...- .|+....-.++...
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~----------~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i 117 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKN----------PDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYII 117 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccC----------CCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccccc
Confidence 3447899999999998765444333221 345899999999999999999976421 13222211122111
Q ss_pred CHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccC-ChhhH---HHHHHHHHHHHhhccccccEEEE
Q 000114 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVL---ESIVARTVRQIETTKEHIRLVGL 666 (2158)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~-rg~~l---e~iv~r~~~~~~~~~~~~riv~l 666 (2158)
.. ...+-+++..+ ++-|... ..+.++++|||||+-.+... +.+.+ +.+.+.+... .....++|++
T Consensus 118 ~~---~~~~rLivqId---SL~R~~~--~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~l---I~~ak~VI~~ 186 (824)
T PF02399_consen 118 DG---RPYDRLIVQID---SLHRLDG--SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKEL---IRNAKTVIVM 186 (824)
T ss_pred cc---cccCeEEEEeh---hhhhccc--ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHH---HHhCCeEEEe
Confidence 11 12455555555 4544443 45677999999999754331 22222 2222222222 2345689999
Q ss_pred ccccCChHHHHHHHh-ccccCceEEecCCcccccceeEEEeecc-------------C--Ch--------------hHHH
Q 000114 667 SATLPNYEDVALFLR-VNLEKGLFYFDNSYRPVPLSQQYIGIQV-------------K--KP--------------LQRF 716 (2158)
Q Consensus 667 SATlpn~~dv~~~l~-~~~~~~~~~f~~~~rpv~l~~~~~~~~~-------------~--~~--------------~~~~ 716 (2158)
-||+.+ ..-+|+. ..+...+.++.++|.......+...+-. . .. ....
T Consensus 187 DA~ln~--~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (824)
T PF02399_consen 187 DADLND--QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAI 264 (824)
T ss_pred cCCCCH--HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccccc
Confidence 999973 3334443 2233444444444332211111100000 0 00 0000
Q ss_pred HHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccC
Q 000114 717 QLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (2158)
..-....+..+... ..++.+-||++|...++.+++...... .
T Consensus 265 ~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~-------------------------------------~ 307 (824)
T PF02399_consen 265 SNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFT-------------------------------------K 307 (824)
T ss_pred ccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcC-------------------------------------C
Confidence 00001123333333 337788899999888877776655431 2
Q ss_pred CeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEE--EEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV--IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 796 gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v--VI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
.|..+++.-+.. .++. =++.+|++=|+++..|+++-.... +.-+-.+.. .| -+..+..||+||.-.
T Consensus 308 ~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~--~g----pd~~s~~Q~lgRvR~ 375 (824)
T PF02399_consen 308 KVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMS--YG----PDMVSVYQMLGRVRS 375 (824)
T ss_pred eEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEecCCC--CC----CcHHHHHHHHHHHHh
Confidence 244455544333 2221 357899999999999999854322 332211111 11 155679999999977
Q ss_pred CCCCCccEEEEEcCCC
Q 000114 874 PQYDSYGEGIIITGHS 889 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~ 889 (2158)
.. ..+.++.++..
T Consensus 376 l~---~~ei~v~~d~~ 388 (824)
T PF02399_consen 376 LL---DNEIYVYIDAS 388 (824)
T ss_pred hc---cCeEEEEEecc
Confidence 53 35666666654
No 302
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.76 E-value=2.8e-06 Score=107.99 Aligned_cols=356 Identities=17% Similarity=0.195 Sum_probs=189.1
Q ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHH--HHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTIC--SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~--a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
+..+.|+|+..+.-++ ..+.--|++-.-|=|||+. +.|+.+.+-.. -.+ .+|||||. .++.|+.++|...
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k--~~~--paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGK--LTK--PALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhccc--ccC--ceEEEccH-HHHHHHHHHHHHh
Confidence 4577899999887764 3444578999999999954 44555544322 124 79999997 6788999999854
Q ss_pred hcCCCCcEEEEEcCCcch------------h----hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1414 FGQGLGMRVVELTGETAM------------D----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~~~------------~----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+. ..+|..++|..+. + ......+.|+|+|.+.+- .......-...+++|+||.|.|-
T Consensus 278 ~p---~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r----~~~d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 278 WP---PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR----IQGDDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred Cc---ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc----ccCcccccccccEEEecCccccc
Confidence 43 4688888875542 1 122335589999977642 21111122346899999999996
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHH---HHHhccCCCc-eEecCCCCcccccEEEEecccc-cc
Q 000114 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDL---GEWIGATSHG-LFNFPPGVRPVPLEIHIQGVDI-TN 1551 (2158)
Q Consensus 1478 ~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl---~~wl~~~~~~-i~~f~~~~rpv~l~~~i~~~~~-~~ 1551 (2158)
.+.. +..+ .+.++...-|||+..+.+.| ..++ -+|..-..-+ .-.|...+ .+|+... ++.. ..
T Consensus 351 Npns---~isl-----ackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f-~~pI~~G--gyaNAs~ 419 (923)
T KOG0387|consen 351 NPNS---KISL-----ACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNF-EHPINRG--GYANASP 419 (923)
T ss_pred CCcc---HHHH-----HHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhh-hhheecc--ccCCCCH
Confidence 5442 2122 22333445666555555555 3332 2333211100 00111111 1122111 1110 00
Q ss_pred hH----HH----HHhcChHH-----HHHHHH-hHhcCCCEEEEecChHHHHHHHHHHHhhc----ccCCcc---------
Q 000114 1552 FE----AR----MQAMTKPT-----FTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYS----SMDGDQ--------- 1604 (2158)
Q Consensus 1552 ~~----~~----~~~~~k~~-----~~~i~~-~~~~~~~~IVFv~sr~~~~~~a~~L~~~~----~~~~~~--------- 1604 (2158)
.. .+ +.....|. ...+.. .+....-.++||.--..-+.++..+.+-- ..++..
T Consensus 420 ~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iL 499 (923)
T KOG0387|consen 420 RQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDIL 499 (923)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHH
Confidence 00 00 11111111 111111 22233448999986655555555543210 000000
Q ss_pred ------cccccCC-------Ccc--------c---chhhHhh-------------------hhHHHHHHHhcccEEEecC
Q 000114 1605 ------KSAFLLW-------PAE--------E---VEPFIDN-------------------IQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1605 ------~~~~l~~-------~~~--------~---l~~~~~~-------------------i~d~~L~~~l~~gv~~~H~ 1641 (2158)
+..+-.+ +.. . +..++.. +-+..|...-++...-+.|
T Consensus 500 rkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDG 579 (923)
T KOG0387|consen 500 RKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDG 579 (923)
T ss_pred HhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecC
Confidence 0000000 000 0 0111100 0112233233455677789
Q ss_pred CCCHHHHHHHHHHHHcCCc--eEEEecCccccccCCC-ccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCc
Q 000114 1642 GLNKTDQEVVSALFEAGKI--KVCVMSSSMCWGVPLT-AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i--~VLVaT~~la~Gvdlp-~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~ 1718 (2158)
..+...|..+.+.|.++.. =.|++|.+.+-|+|+. +.+||| |||.- ++..=.|-.-||=|.|..+.
T Consensus 580 tT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII-----fDPdW------NPStD~QAreRawRiGQkkd 648 (923)
T KOG0387|consen 580 TTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII-----FDPDW------NPSTDNQARERAWRIGQKKD 648 (923)
T ss_pred CCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE-----ECCCC------CCccchHHHHHHHhhcCccc
Confidence 9999999999999997753 3678899999999998 566666 55543 33334677788888886666
Q ss_pred eEEEEEecCC
Q 000114 1719 GKCVILCHAP 1728 (2158)
Q Consensus 1719 G~~iil~~~~ 1728 (2158)
-.+|-|....
T Consensus 649 V~VYRL~t~g 658 (923)
T KOG0387|consen 649 VVVYRLMTAG 658 (923)
T ss_pred eEEEEEecCC
Confidence 6677776665
No 303
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.68 E-value=3.2e-07 Score=121.02 Aligned_cols=337 Identities=20% Similarity=0.234 Sum_probs=202.4
Q ss_pred cccccCCCChhhHhhcCCCCCCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCc
Q 000114 475 KLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551 (2158)
Q Consensus 475 ~l~~i~~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~ 551 (2158)
...+++..|+|. +-.+|+.+|-.-+..++. .+.|+|+.-.-|-|||..-. +.|..+.......|
T Consensus 355 ~~~Kle~qp~~~-----~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~~~~g------- 421 (1373)
T KOG0384|consen 355 RFRKLEKQPEYK-----GGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSLQIHG------- 421 (1373)
T ss_pred hHHHhhcCcccc-----ccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHhhhccC-------
Confidence 444555556653 237899999998876553 46789999999999996542 22222222111111
Q ss_pred EEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh------------hccccEEEcchhHHHHHHhccCCCc
Q 000114 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ------------IEETQIIVTTPEKWDIITRKSGDRT 619 (2158)
Q Consensus 552 kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~------------~~~~~IiV~TPekld~l~r~~~~~~ 619 (2158)
-.|+|+|.-- +.-+.+.|.... .+++..++|+.....-. .-..++++||.|.+ +.-. .
T Consensus 422 pflvvvplst-~~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~---LkDk---~ 491 (1373)
T KOG0384|consen 422 PFLVVVPLST-ITAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIV---LKDK---A 491 (1373)
T ss_pred CeEEEeehhh-hHHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHH---hccH---h
Confidence 2577888755 455666776654 56888899976432211 11578999999953 2211 2
Q ss_pred cccc--cceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCceEEecC--
Q 000114 620 YTQL--VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFYFDN-- 693 (2158)
Q Consensus 620 ~l~~--v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp--n~~dv~~~l~~~~~~~~~~f~~-- 693 (2158)
.++. ..+++|||||+|-..-...++. +..+ . .-.-+++|.|.- |.+++...+....+ +-|....
T Consensus 492 ~L~~i~w~~~~vDeahrLkN~~~~l~~~-l~~f-------~-~~~rllitgTPlQNsikEL~sLl~Fl~P-~kf~~~~~f 561 (1373)
T KOG0384|consen 492 ELSKIPWRYLLVDEAHRLKNDESKLYES-LNQF-------K-MNHRLLITGTPLQNSLKELWSLLHFLMP-GKFDSWDEF 561 (1373)
T ss_pred hhccCCcceeeecHHhhcCchHHHHHHH-HHHh-------c-ccceeeecCCCccccHHHHHHHhcccCC-CCCCcHHHH
Confidence 2333 4789999999996543333333 2111 1 122377788832 35555555533211 1010000
Q ss_pred --C---------------ccc--------------ccceeEEEeeccCC------------------------hhHHHHH
Q 000114 694 --S---------------YRP--------------VPLSQQYIGIQVKK------------------------PLQRFQL 718 (2158)
Q Consensus 694 --~---------------~rp--------------v~l~~~~~~~~~~~------------------------~~~~~~~ 718 (2158)
. .+| .|-..+++.+.... ....++.
T Consensus 562 ~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNi 641 (1373)
T KOG0384|consen 562 LEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNI 641 (1373)
T ss_pred HHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHH
Confidence 0 011 01111222111100 0011111
Q ss_pred hhH----------------------------H-------------HHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHH
Q 000114 719 MND----------------------------L-------------CYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRD 755 (2158)
Q Consensus 719 l~~----------------------------~-------------~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~ 755 (2158)
|.+ . +.++++-.+ ++++||||..=.+--.-++.+|..
T Consensus 642 mmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~ 721 (1373)
T KOG0384|consen 642 MMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSL 721 (1373)
T ss_pred HHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHH
Confidence 111 0 122222222 268999998888777778888877
Q ss_pred HhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhC---CCceEEEechhhhh
Q 000114 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD---GHVQVLVSTATLAW 832 (2158)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~---g~i~VLVaT~tla~ 832 (2158)
+++....+ -|++..+-|+..++.|.. ...-.|.||-+.+-
T Consensus 722 r~ypfQRL-------------------------------------DGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGL 764 (1373)
T KOG0384|consen 722 RGYPFQRL-------------------------------------DGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGL 764 (1373)
T ss_pred cCCcceec-------------------------------------cCCcchHHHHHHHHhccCCCCCceEEEEecccCcc
Confidence 76554433 789999999999999975 45678999999999
Q ss_pred ccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 833 GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
||||-+.+-||.++.-|||. .=+|..-||-|-|..+.-.+|.+++.+..
T Consensus 765 GINLatADTVIIFDSDWNPQ----------NDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 765 GINLATADTVIIFDSDWNPQ----------NDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred cccccccceEEEeCCCCCcc----------hHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 99999888777766666665 47899999999998888888988888653
No 304
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.65 E-value=2.9e-06 Score=110.71 Aligned_cols=302 Identities=16% Similarity=0.189 Sum_probs=162.5
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l 1436 (2158)
+.-.+|-||.|||||.+..- .++.... .+.. ++++|+.+++|+.+...+++.. ...|.....-.++...+.
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~-wLk~~l~-~~~~--~VLvVShRrSL~~sL~~rf~~~--~l~gFv~Y~d~~~~~i~~--- 119 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIR-WLKDALK-NPDK--SVLVVSHRRSLTKSLAERFKKA--GLSGFVNYLDSDDYIIDG--- 119 (824)
T ss_pred CCeEEEECCCCCCcHHHHHH-HHHHhcc-CCCC--eEEEEEhHHHHHHHHHHHHhhc--CCCcceeeeccccccccc---
Confidence 44578899999999976633 3333322 2344 8999999999999999988732 111332211111111110
Q ss_pred cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCC---hHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGP---VLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~---~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
...+-+++..+. +.|- ....+.+.++|||||+-.+... ..+ ..+.+...+..+. .+..++|++-|++.
T Consensus 120 ~~~~rLivqIdS---L~R~--~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI---~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 120 RPYDRLIVQIDS---LHRL--DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELI---RNAKTVIVMDADLN 191 (824)
T ss_pred cccCeEEEEehh---hhhc--ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH---HhCCeEEEecCCCC
Confidence 123455555443 3333 1235778999999999855431 111 2334444444443 44778999999997
Q ss_pred Ch-HHHHHHhc-cCCCc-eEec--CCCC--cccccEEEEecccccc------------------------hHHHHHhcC-
Q 000114 1513 NA-KDLGEWIG-ATSHG-LFNF--PPGV--RPVPLEIHIQGVDITN------------------------FEARMQAMT- 1560 (2158)
Q Consensus 1513 n~-~dl~~wl~-~~~~~-i~~f--~~~~--rpv~l~~~i~~~~~~~------------------------~~~~~~~~~- 1560 (2158)
+. -|+-+-+. ..... ++|- .+.+ |... ....+.... .........
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~---~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCT---FLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDE 268 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEE---EecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccch
Confidence 52 23333332 21111 1111 1111 1100 000000000 000000111
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
..-+..+...+..++.+-||++|...++.++.... .....|..++
T Consensus 269 ~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~-----------------------------------~~~~~Vl~l~ 313 (824)
T PF02399_consen 269 TTFFSELLARLNAGKNICVFSSTVSFAEIVARFCA-----------------------------------RFTKKVLVLN 313 (824)
T ss_pred hhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHH-----------------------------------hcCCeEEEEc
Confidence 12344555666888999999999888776664331 1244577777
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccE-E-EEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCc
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHL-V-VVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~-v-VI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~ 1718 (2158)
+.-+..+ ++. =++.+|++=|+++..|+++...+ . |. -|..+. .+ -.+..+..||+||+-... .
T Consensus 314 s~~~~~d---v~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f---~yvk~~--~~-gpd~~s~~Q~lgRvR~l~---~ 378 (824)
T PF02399_consen 314 STDKLED---VES---WKKYDVVIYTPVITVGLSFEEKHFDSMF---AYVKPM--SY-GPDMVSVYQMLGRVRSLL---D 378 (824)
T ss_pred CCCCccc---ccc---ccceeEEEEeceEEEEeccchhhceEEE---EEecCC--CC-CCcHHHHHHHHHHHHhhc---c
Confidence 7655542 222 35789999999999999986321 1 11 011111 01 124778999999997754 4
Q ss_pred eEEEEEecCC
Q 000114 1719 GKCVILCHAP 1728 (2158)
Q Consensus 1719 G~~iil~~~~ 1728 (2158)
...++..+..
T Consensus 379 ~ei~v~~d~~ 388 (824)
T PF02399_consen 379 NEIYVYIDAS 388 (824)
T ss_pred CeEEEEEecc
Confidence 5566666554
No 305
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.64 E-value=2.2e-06 Score=103.17 Aligned_cols=368 Identities=16% Similarity=0.173 Sum_probs=187.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
+..+-|+|.+-+.-.++.+..+++.-.-|-|||+.| ++|...... .. -.++++|. ++-..+.+.+.+.|+...
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyra---Ew--plliVcPA-svrftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRA---EW--PLLIVCPA-SVRFTWAKALNRFLPSIH 268 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhh---cC--cEEEEecH-HHhHHHHHHHHHhccccc
Confidence 346778999998888887777999999999999998 777766665 33 57899996 334445555554444332
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhc
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~ 1498 (2158)
. +....+....-...-....|.|.+.+.+..+-...+ -...+++|+||.|+|-+..... .+.+...+
T Consensus 269 p--i~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr-------~Ka~~dll 335 (689)
T KOG1000|consen 269 P--IFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKR-------TKAATDLL 335 (689)
T ss_pred c--eEEEecccCCccccccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhh-------hhhhhhHH
Confidence 3 333333222221222344788999888765443322 2348999999999997654322 22222223
Q ss_pred CCCceEEEeccCCCC--hHHHHHHhccCCCceE----ecC---CCCcccccEEEEecccccc---hHHHHHhcChHHHHH
Q 000114 1499 ENKIRIVALSTSLAN--AKDLGEWIGATSHGLF----NFP---PGVRPVPLEIHIQGVDITN---FEARMQAMTKPTFTA 1566 (2158)
Q Consensus 1499 ~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~----~f~---~~~rpv~l~~~i~~~~~~~---~~~~~~~~~k~~~~~ 1566 (2158)
..-.++|+||.|++- +.++-..+.+-...+| .|. -+.+.++.-..+.+..... +.-.-..|.+.....
T Consensus 336 k~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 336 KVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred HHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999753 2333332322222111 111 1123333333332222111 011112345555666
Q ss_pred HHHhHhcCCCEEEEecC-hHHHHHHHHHHHhhccc-C---Ccccc-c----cc-CCCcccchhhHh--------------
Q 000114 1567 IVQHAKNEKPALVFVPS-RKYVRLTAVDLMTYSSM-D---GDQKS-A----FL-LWPAEEVEPFID-------------- 1621 (2158)
Q Consensus 1567 i~~~~~~~~~~IVFv~s-r~~~~~~a~~L~~~~~~-~---~~~~~-~----~l-~~~~~~l~~~~~-------------- 1621 (2158)
++..+-+..+.+|++.. +..+.. .++...... . ...+. . |. ......+..+++
T Consensus 416 vL~qLPpKrr~Vv~~~~gr~da~~--~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~ 493 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYVSGGRIDARM--DDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPR 493 (689)
T ss_pred HHhhCCccceEEEEEcCCccchHH--HHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCc
Confidence 66665555555555543 322221 111111100 0 00000 0 00 000001111111
Q ss_pred ---------hhhHHHHHHHhccc--EEEecCCCCHHHHHHHHHHHHcC-CceE-EEecCccccccCCCccEEEEecceee
Q 000114 1622 ---------NIQEEMLKATLRHG--VGYLHEGLNKTDQEVVSALFEAG-KIKV-CVMSSSMCWGVPLTAHLVVVMGTQYY 1688 (2158)
Q Consensus 1622 ---------~i~d~~L~~~l~~g--v~~~H~~l~~~dR~~v~~~F~~g-~i~V-LVaT~~la~Gvdlp~~~vVI~gt~~y 1688 (2158)
.+-|..-......+ ..-+.|..+..+|....+.|... +++| +++-.+++.|+++.+..+||..--++
T Consensus 494 KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~w 573 (689)
T KOG1000|consen 494 KFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHW 573 (689)
T ss_pred eEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecC
Confidence 11122222222333 34567889999999999999854 3443 33344568999999888877433334
Q ss_pred cCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecC-ChHHHHHHHhh
Q 000114 1689 DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA-PRKEYYKKFLY 1738 (2158)
Q Consensus 1689 d~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~-~~~~~~~k~l~ 1738 (2158)
++. -++|-=-||.|.|....-.++.+|.. ...++.-..++
T Consensus 574 nPg----------vLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 574 NPG----------VLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred CCc----------eEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 333 24455555555553333333444444 34455444443
No 306
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.61 E-value=2.8e-06 Score=108.02 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=86.7
Q ss_pred CCCCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHH--HHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 493 MTQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNV--AVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~--a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
+..|.++|+..+..+++ .+.--|+.-.-|-|||.. +.|+.|++-... ...+|+|||. .++.|+.
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~----------~~paLIVCP~-Tii~qW~ 271 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKL----------TKPALIVCPA-TIIHQWM 271 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccc----------cCceEEEccH-HHHHHHH
Confidence 35789999999987653 233368888999999954 334444432111 1269999996 6789999
Q ss_pred HHHHhhcccCCcEEEEEeCCCcc----------------CHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeec
Q 000114 568 GNLSNRLQMYDVKVRELSGDQTL----------------TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (2158)
Q Consensus 568 ~~~~~~~~~~gi~v~~l~Gd~~~----------------~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDE 631 (2158)
++|+.++.+ ++|.+++|..+. .+.......|+++|.+.+. ..++...-....++|+||
T Consensus 272 ~E~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r----~~~d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 272 KEFQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR----IQGDDLLGILWDYVILDE 345 (923)
T ss_pred HHHHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc----ccCcccccccccEEEecC
Confidence 999998765 578888775542 1112345679999998652 222222233458999999
Q ss_pred ccccccC
Q 000114 632 IHLLHDN 638 (2158)
Q Consensus 632 aH~l~d~ 638 (2158)
.|.+-..
T Consensus 346 GH~IrNp 352 (923)
T KOG0387|consen 346 GHRIRNP 352 (923)
T ss_pred cccccCC
Confidence 9998653
No 307
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.61 E-value=1.7e-07 Score=98.27 Aligned_cols=132 Identities=20% Similarity=0.338 Sum_probs=74.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccC
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2158)
+-.++-..+|||||--.+--+++.... .+.++|+++|||.++.++.+.++.. ++++. +.-..
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~----------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~-- 66 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIK----------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM-- 66 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHH----------TT--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS--
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHH----------ccCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee--
Confidence 345788999999998655545544333 2348999999999999999887542 33332 21111
Q ss_pred HhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHH-HHHHhhccccccEEEEccc
Q 000114 592 RQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART-VRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 592 ~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~-~~~~~~~~~~~riv~lSAT 669 (2158)
.....+.-|-|+|...+ ..+.+ . ....++++||+||||..-. .+|..+- ++... .....++|.+|||
T Consensus 67 ~~~~g~~~i~vMc~at~~~~~~~-p---~~~~~yd~II~DEcH~~Dp------~sIA~rg~l~~~~-~~g~~~~i~mTAT 135 (148)
T PF07652_consen 67 RTHFGSSIIDVMCHATYGHFLLN-P---CRLKNYDVIIMDECHFTDP------TSIAARGYLRELA-ESGEAKVIFMTAT 135 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHT-S---SCTTS-SEEEECTTT--SH------HHHHHHHHHHHHH-HTTS-EEEEEESS
T ss_pred ccccCCCcccccccHHHHHHhcC-c---ccccCccEEEEeccccCCH------HHHhhheeHHHhh-hccCeeEEEEeCC
Confidence 12234566788888876 33333 2 3357899999999997421 1222221 11111 2345789999999
Q ss_pred cCC
Q 000114 670 LPN 672 (2158)
Q Consensus 670 lpn 672 (2158)
.|.
T Consensus 136 PPG 138 (148)
T PF07652_consen 136 PPG 138 (148)
T ss_dssp -TT
T ss_pred CCC
Confidence 874
No 308
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.59 E-value=1.6e-06 Score=115.11 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc
Q 000114 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~ 575 (2158)
+.++|--.-- +++.+ -|.-+.||=|||+++.+|+.-....++ .|-+|+..-=||.-=++.+...+.
T Consensus 170 ~yDVQliGgi-vLh~G--~IAEM~TGEGKTLvAtlp~yLnAL~Gk-----------gVHvVTVNDYLA~RDaewmgply~ 235 (1112)
T PRK12901 170 HYDVQLIGGV-VLHQG--KIAEMATGEGKTLVATLPVYLNALTGN-----------GVHVVTVNDYLAKRDSEWMGPLYE 235 (1112)
T ss_pred ccchHHhhhh-hhcCC--ceeeecCCCCchhHHHHHHHHHHHcCC-----------CcEEEEechhhhhccHHHHHHHHH
Confidence 4555543322 23332 588999999999999999876665542 255566666788877788888888
Q ss_pred cCCcEEEEEeC-CCcc-CHhhhccccEEEcchhHH--HHHHhcc---CCCccccccceEEeeccccc
Q 000114 576 MYDVKVRELSG-DQTL-TRQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 576 ~~gi~v~~l~G-d~~~-~~~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l 635 (2158)
.+|++|++... +.+. .++..-.++|.++|..-+ |.|.-+. .+......+.+.||||+|.+
T Consensus 236 fLGLsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 236 FHGLSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred HhCCceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 89999998865 3232 334456899999998775 5554432 12234455789999999965
No 309
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.56 E-value=9.1e-07 Score=116.91 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=71.2
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHc---CCceEEEecCccccccCCC-ccEEEEecceeecCCCCcCcCCCHHHHHHhhc
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEA---GKIKVCVMSSSMCWGVPLT-AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~---g~i~VLVaT~~la~Gvdlp-~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~G 1708 (2158)
++..--+-|++..+-|+..++.|.. ...-.|+||.+.+-|||+- +.+||| ++.|.++..=+|-..
T Consensus 723 ~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII-----------FDSDWNPQNDLQAqA 791 (1373)
T KOG0384|consen 723 GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII-----------FDSDWNPQNDLQAQA 791 (1373)
T ss_pred CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE-----------eCCCCCcchHHHHHH
Confidence 4556778899999999999999985 4567999999999999998 677777 344556777789999
Q ss_pred cCCCCCCCCceEEEEEecCCh
Q 000114 1709 HASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1709 RaGR~g~d~~G~~iil~~~~~ 1729 (2158)
||.|-|..+.-.+|-|++...
T Consensus 792 RaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred HHHhhcccceEEEEEEecCCc
Confidence 999999888888898887763
No 310
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.51 E-value=6.9e-07 Score=93.76 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l 1436 (2158)
++-.+|-..+|+|||.-.+--+++.-.. .+. |+|+++|||.++.++.+.++ .. ++++. +.-.. ....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~--rvLvL~PTRvva~em~~aL~----~~-~~~~~--t~~~~--~~~~ 70 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--RRL--RVLVLAPTRVVAEEMYEALK----GL-PVRFH--TNARM--RTHF 70 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--TT----EEEEESSHHHHHHHHHHTT----TS-SEEEE--STTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--ccC--eEEEecccHHHHHHHHHHHh----cC-CcccC--ceeee--cccc
Confidence 3446888999999998664444443333 244 99999999999999988765 11 23332 21111 1223
Q ss_pred cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh
Q 000114 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2158)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~ 1514 (2158)
...-|-++|-..+...+.. ...+.+++++|+||+|...... -.+...+..... ....++|.+|||+|-.
T Consensus 71 g~~~i~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~~Dp~s----IA~rg~l~~~~~--~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLN---PCRLKNYDVIIMDECHFTDPTS----IAARGYLRELAE--SGEAKVIFMTATPPGS 139 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHT---SSCTTS-SEEEECTTT--SHHH----HHHHHHHHHHHH--TTS-EEEEEESS-TT-
T ss_pred CCCcccccccHHHHHHhcC---cccccCccEEEEeccccCCHHH----HhhheeHHHhhh--ccCeeEEEEeCCCCCC
Confidence 4456888888876554433 3346899999999999763221 123333444332 2357899999998753
No 311
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.48 E-value=5e-07 Score=111.45 Aligned_cols=167 Identities=21% Similarity=0.215 Sum_probs=96.9
Q ss_pred HHHHHHHHHHc------------CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 499 VQSRVYKSALS------------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 499 iQ~~~i~~~l~------------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
+|.+++..++. .....|++-.+|+|||..++..+......... ....++|||+|. ++..++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~------~~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQ------RGEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTT------SS-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcccc------ccccceeEeecc-chhhhh
Confidence 46777665533 23468999999999998887666533322211 012259999999 888999
Q ss_pred HHHHHhhcccCCcEEEEEeCCC---ccCHhhhccccEEEcchhHHHHHHhc-cCCCccccccceEEeecccccccCChhh
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQ---TLTRQQIEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~---~~~~~~~~~~~IiV~TPekld~l~r~-~~~~~~l~~v~lIIiDEaH~l~d~rg~~ 642 (2158)
..++.+.+.+..+++..+.|+. ..........+++|+|.+.+...... ......--+.++||+||+|.+.+.....
T Consensus 74 ~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~ 153 (299)
T PF00176_consen 74 KEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKR 153 (299)
T ss_dssp HHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHH
T ss_pred hhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccc
Confidence 9999998865567888888876 11122345789999999975411011 1111111237899999999996544333
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHh
Q 000114 643 LESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLR 681 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~ 681 (2158)
...+ .... ....++||||+-. ..|+...+.
T Consensus 154 ~~~l--------~~l~-~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 154 YKAL--------RKLR-ARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp HHHH--------HCCC-ECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred cccc--------cccc-cceEEeeccccccccccccccchh
Confidence 3322 1222 5667889999432 455555444
No 312
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.46 E-value=8.4e-06 Score=103.72 Aligned_cols=377 Identities=17% Similarity=0.209 Sum_probs=203.5
Q ss_pred CCHHHHHHHH---HHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1342 FNPIQTQVFT---VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1342 ~~~iQ~q~~~---~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
+-++|.--++ .+|+.+-|.|++-.-|=|||..+ ++.+..+.+.+..| .-+||||.-.| .-+.+++. +|++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~~g--pHLVVvPsSTl-eNWlrEf~-kwCP-- 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGNPG--PHLVVVPSSTL-ENWLREFA-KWCP-- 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCCCC--CcEEEecchhH-HHHHHHHH-HhCC--
Confidence 6666765444 35667778899999999999665 55555666543344 56889998554 33444454 4544
Q ss_pred CcEEEEEcCCcchhhh---cc----cCCcEEEeCHHHHHHHHhhhhcccc--ccceeEEEecccccccCCCCChHHHHHH
Q 000114 1419 GMRVVELTGETAMDLK---LL----EKGQIIISTPEKWDALSRRWKQRKY--VQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~---~l----~~~~IIV~TPe~l~~l~r~~~~~~~--l~~v~llIiDEaH~l~~~~g~~~e~~is 1489 (2158)
.++|-.++|......+ .+ ...+|+++|...... ....+.+ -.+++++|+||.|+|-+.....|..++
T Consensus 473 sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~---~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM- 548 (941)
T KOG0389|consen 473 SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAAS---SKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLM- 548 (941)
T ss_pred ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccC---ChHHHHHHHhccccEEEecchhhhhccchHHHHHhc-
Confidence 5889999997643311 11 144999999765421 0001111 246789999999999754322222222
Q ss_pred HHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCC-------cccccEEEEe-cccccchHHHHHhcC
Q 000114 1490 RMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGV-------RPVPLEIHIQ-GVDITNFEARMQAMT 1560 (2158)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~-------rpv~l~~~i~-~~~~~~~~~~~~~~~ 1560 (2158)
+ .+.+.|+++..+++.| ..++-..|.--...+|.-.-.. +..+ .-... ..-......+...|.
T Consensus 549 ------~-I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~-d~d~e~~~l~qerIsrAK~im 620 (941)
T KOG0389|consen 549 ------S-INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTS-DGDIENALLSQERISRAKTIM 620 (941)
T ss_pred ------c-ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCc-cchhhHHHHHHHHHHHHHHhh
Confidence 1 2456776665555655 4444433322222222211000 0000 00000 000001122333333
Q ss_pred hH-----HHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcc----c-CCc--ccc----------------------
Q 000114 1561 KP-----TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSS----M-DGD--QKS---------------------- 1606 (2158)
Q Consensus 1561 k~-----~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~----~-~~~--~~~---------------------- 1606 (2158)
+| ....++..+-+..+.|.||.-.+.-+.++..++.... . ..+ ...
T Consensus 621 ~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~ 700 (941)
T KOG0389|consen 621 KPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYT 700 (941)
T ss_pred hHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhcc
Confidence 33 2334445556667788888766555555555544331 0 000 000
Q ss_pred ---------------cccCCCc-----------------------------------------ccchhhHhhhhH-----
Q 000114 1607 ---------------AFLLWPA-----------------------------------------EEVEPFIDNIQE----- 1625 (2158)
Q Consensus 1607 ---------------~~l~~~~-----------------------------------------~~l~~~~~~i~d----- 1625 (2158)
+|..+.. ..+..++..+..
T Consensus 701 de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RV 780 (941)
T KOG0389|consen 701 DEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRV 780 (941)
T ss_pred HHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEE
Confidence 0000000 001111111100
Q ss_pred -------------HHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCC--ceEEEecCccccccCCCccEEEEecceeecC
Q 000114 1626 -------------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGK--IKVCVMSSSMCWGVPLTAHLVVVMGTQYYDG 1690 (2158)
Q Consensus 1626 -------------~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~--i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~ 1690 (2158)
+.+-..++++..-+.|...-.+|..+++.|...+ .-.|.+|.+.+.|||+.+..+|| .||
T Consensus 781 LiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VI----ihD- 855 (941)
T KOG0389|consen 781 LIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVI----IHD- 855 (941)
T ss_pred EEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEE----Eee-
Confidence 1122334556667789999999999999998654 35788999999999999777777 233
Q ss_pred CCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh-HHHHHHHhhCCCccccch
Q 000114 1691 QENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR-KEYYKKFLYDAFPVESHL 1747 (2158)
Q Consensus 1691 ~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~-~~~~~k~l~~~~piES~L 1747 (2158)
+++.+-+=.|---||.|.|..+.-.++-+...+. .+.+.++-+.-+.+|+.+
T Consensus 856 -----~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~l 908 (941)
T KOG0389|consen 856 -----IDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADL 908 (941)
T ss_pred -----cCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhh
Confidence 3333434456666677766566777777766654 456666666666777666
No 313
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.45 E-value=1.5e-06 Score=107.13 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=92.6
Q ss_pred HHHHHHHHHh------------cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCC-CceEEEEEcccHHHHHHHHHHHH
Q 000114 1345 IQTQVFTVLY------------NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1345 iQ~q~~~~l~------------~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~-~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+|.+++.-++ ......|++-.+|+|||+.+...+. .+....+. +.-+++||+|. ++..++..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 4666666553 2345799999999999988855444 44332221 11159999999 88899999998
Q ss_pred HHhcCCCCcEEEEEcCCc-c--hhhhcccCCcEEEeCHHHHHHHHhhhh-ccccccceeEEEecccccccCCCCChHHHH
Q 000114 1412 IKFGQGLGMRVVELTGET-A--MDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~-~--~~~~~l~~~~IIV~TPe~l~~l~r~~~-~~~~l~~v~llIiDEaH~l~~~~g~~~e~~ 1487 (2158)
+.+.. ...++..+.|.. . .........+++|+|.+.+......+. ....--+.++||+||+|.+.+..+..+..
T Consensus 79 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~- 156 (299)
T PF00176_consen 79 KWFDP-DSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKA- 156 (299)
T ss_dssp HHSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHH-
T ss_pred ccccc-ccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccc-
Confidence 55532 246888888876 1 123345567999999998761111100 01111348999999999995444322221
Q ss_pred HHHHHHHHhhcCCCceEEEeccCCCC--hHHHHH
Q 000114 1488 VSRMRYIASQVENKIRIVALSTSLAN--AKDLGE 1519 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~ 1519 (2158)
+. .+. ....++||||+.. ..|+..
T Consensus 157 ------l~-~l~-~~~~~lLSgTP~~n~~~dl~~ 182 (299)
T PF00176_consen 157 ------LR-KLR-ARYRWLLSGTPIQNSLEDLYS 182 (299)
T ss_dssp ------HH-CCC-ECEEEEE-SS-SSSGSHHHHH
T ss_pred ------cc-ccc-cceEEeecccccccccccccc
Confidence 11 123 5667889999644 345444
No 314
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.42 E-value=7.7e-06 Score=108.78 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=73.4
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcC-C-cchhhhccc
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG-E-TAMDLKLLE 1437 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG-~-~~~~~~~l~ 1437 (2158)
-|.-+.||=|||+++-+|+.-.... +. .+-+|+..--||.-=++.+. .+-..+|++|+++.. + .+...+..-
T Consensus 185 ~IAEM~TGEGKTLvAtlp~yLnAL~---Gk--gVHvVTVNDYLA~RDaewmg-ply~fLGLsvg~i~~~~~~~~~rr~aY 258 (1112)
T PRK12901 185 KIAEMATGEGKTLVATLPVYLNALT---GN--GVHVVTVNDYLAKRDSEWMG-PLYEFHGLSVDCIDKHQPNSEARRKAY 258 (1112)
T ss_pred ceeeecCCCCchhHHHHHHHHHHHc---CC--CcEEEEechhhhhccHHHHH-HHHHHhCCceeecCCCCCCHHHHHHhC
Confidence 4789999999999999998755444 33 34556666677765555444 333457999998865 3 233455666
Q ss_pred CCcEEEeCHHHHH-HHHhhh----hccccccceeEEEeccccccc
Q 000114 1438 KGQIIISTPEKWD-ALSRRW----KQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1438 ~~~IIV~TPe~l~-~l~r~~----~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
.+||.++|..-|- +.+|-. ......+.+.+.||||+|.++
T Consensus 259 ~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 259 NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 7899999987651 222211 112234568899999999553
No 315
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.37 E-value=2.3e-06 Score=104.11 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 493 MTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
|. ++|.|.+.+..+ +..++++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..|....
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHH
Confidence 44 599999955543 45567899999999999999999998776643211 0234899999999998888777
Q ss_pred HHhh
Q 000114 570 LSNR 573 (2158)
Q Consensus 570 ~~~~ 573 (2158)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7654
No 316
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.37 E-value=2.3e-06 Score=104.11 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 493 MTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
|. ++|.|.+.+..+ +..++++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..|....
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHH
Confidence 44 599999955543 45567899999999999999999998776643211 0234899999999998888777
Q ss_pred HHhh
Q 000114 570 LSNR 573 (2158)
Q Consensus 570 ~~~~ 573 (2158)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7654
No 317
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.36 E-value=2.9e-06 Score=103.19 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCC-CceEEEEEcccHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~-~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
|. ++|.|.+.+..++ ..++++++.||||+|||+++++|++..+...... .+.+++|.++|.++..|....+++
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 44 5999999666543 3567899999999999999999998776552221 123799999999999988777764
No 318
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.36 E-value=2.9e-06 Score=103.19 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCC-CceEEEEEcccHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~-~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
|. ++|.|.+.+..++ ..++++++.||||+|||+++++|++..+...... .+.+++|.++|.++..|....+++
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 44 5999999666543 3567899999999999999999998776552221 123799999999999988777764
No 319
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.27 E-value=1.5e-05 Score=105.31 Aligned_cols=162 Identities=20% Similarity=0.252 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHH--HcCCC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSA--LSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~--l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
.|+.+|.+-+..+ ++.-+ +-|+|-.-|-|||+..+-.+.......+ .+......+-.++|+|. .|+--+..++.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~--s~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRR--SESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhc--ccchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 6788999988753 33322 5799999999999987655544433321 12222233448999996 78999999999
Q ss_pred hhcccCCcEEEEEeCCCccCH---hhhccccEEEcchhHH----HHHHhccCCCccccccceEEeecccccccCChhhHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKW----DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPekl----d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le 644 (2158)
+++.. ++|..++|...... .+.++++|||++.+.+ +.+... ...++|+||-|.+-..+.
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~--------~wNYcVLDEGHVikN~kt---- 1117 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKI--------DWNYCVLDEGHVIKNSKT---- 1117 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhc--------ccceEEecCcceecchHH----
Confidence 98765 67888888654332 2345779999999975 222221 247999999998865432
Q ss_pred HHHHHHHHHHhhccccccEEEEccccC--ChHHHHH
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSATLP--NYEDVAL 678 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSATlp--n~~dv~~ 678 (2158)
++...+.+...+-| +.||.|.- |..++..
T Consensus 1118 ----kl~kavkqL~a~hR-LILSGTPIQNnvleLWS 1148 (1549)
T KOG0392|consen 1118 ----KLTKAVKQLRANHR-LILSGTPIQNNVLELWS 1148 (1549)
T ss_pred ----HHHHHHHHHhhcce-EEeeCCCcccCHHHHHH
Confidence 11122222233334 66788842 4555443
No 320
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.25 E-value=7.9e-06 Score=97.13 Aligned_cols=167 Identities=15% Similarity=0.170 Sum_probs=136.6
Q ss_pred cCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHcCCCC
Q 000114 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKL 1087 (2158)
Q Consensus 1008 i~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~ 1087 (2158)
|..-||.+|-..+....+..++|.+||.|.||..+. | +.|..-.--|||.||.|-+-
T Consensus 227 vh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~----------------p-------k~pk~~~ekll~dhlnr~~s 283 (610)
T COG5407 227 VHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMN----------------P-------KGPKCTLEKLLGDHLNRARS 283 (610)
T ss_pred eeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhC----------------C-------CCCchhHHHHHHHHHhHhhc
Confidence 566789999998888899999999999999985542 1 12334455699999999887
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCC-CCCccccCCCCHHHHHHHHhCCC-Cc
Q 000114 1088 EGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSV-QTPLRQFNGIPNEILMKLEKKDF-AW 1165 (2158)
Q Consensus 1088 ~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~-~~~l~q~~~~~~~~~~~l~~~~~-~~ 1165 (2158)
..|. ...|..+..-++.||..|+...+.+..+..++++-|+|.|++--+ ..|+.|+|+...+-++++--+.| ++
T Consensus 284 ~~fn----~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~I~~~ 359 (610)
T COG5407 284 VEFN----EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRLIEGM 359 (610)
T ss_pred ccch----heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhhhhhh
Confidence 7666 567888999999999999999999999999999999999999765 68999999999988887765555 45
Q ss_pred hhhccCChHHhhhhhcCch--hHHHHHHHHhcCCcceE
Q 000114 1166 ERYYDLSPQELGELIRFPK--MGRTLHKFVHQFPKLIL 1201 (2158)
Q Consensus 1166 ~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~P~~~~ 1201 (2158)
..+..|..++.++.+++-. ..+.+.+.++.+|++.+
T Consensus 360 ~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~ 397 (610)
T COG5407 360 KAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFL 397 (610)
T ss_pred hhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEE
Confidence 6778888999999987532 23678888999999876
No 321
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.23 E-value=4.3e-05 Score=97.47 Aligned_cols=376 Identities=20% Similarity=0.239 Sum_probs=201.9
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+|-++|.--+..+ ++.+=|.|+.-.-|-|||..++ +.+..+.+...+ + .-+||||.-.| .-+.++|.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g~~-------g-pHLVVvPsSTl-eNWlrEf~ 468 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIGNP-------G-PHLVVVPSSTL-ENWLREFA 468 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcCCC-------C-CcEEEecchhH-HHHHHHHH
Confidence 4778888776643 3444577999999999996542 333333332211 1 35888998665 66778888
Q ss_pred hhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccc--cccceEEeecccccccCChhh
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYT--QLVKLLIIDEIHLLHDNRGPV 642 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l--~~v~lIIiDEaH~l~d~rg~~ 642 (2158)
+++. .++|..++|.....++. ....+|+|||..- ......++.++ .+++++|+||.|+|-+.....
T Consensus 469 kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~l---a~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR 543 (941)
T KOG0389|consen 469 KWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNL---AASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER 543 (941)
T ss_pred HhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeec---ccCChHHHHHHHhccccEEEecchhhhhccchHH
Confidence 8765 47899999976433322 1378999999873 22222233333 346899999999997532222
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCceEEecCCcccccceeEEEeec--c---------
Q 000114 643 LESIVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ--V--------- 709 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riv~lSATlp--n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~--~--------- 709 (2158)
+..++ ..+.+.| ++||.|.- |..++-..|..-++. + |+...... ...+-... .
T Consensus 544 y~~LM--------~I~An~R-lLLTGTPLQNNL~ELiSLL~FvlP~-v--F~~~~~dl--~~if~~k~~~d~d~e~~~l~ 609 (941)
T KOG0389|consen 544 YKHLM--------SINANFR-LLLTGTPLQNNLKELISLLAFVLPK-V--FDSSMEDL--DVIFKAKKTSDGDIENALLS 609 (941)
T ss_pred HHHhc--------cccccce-EEeeCCcccccHHHHHHHHHHHhhH-h--hhccchHH--HHHHhccCCccchhhHHHHH
Confidence 22222 1234444 67788832 444554444432211 1 11111100 00000000 0
Q ss_pred CChhHHHHH-hhHHHH----HHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhh---cccccc----c-----------
Q 000114 710 KKPLQRFQL-MNDLCY----EKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTAL---ENDTLG----R----------- 765 (2158)
Q Consensus 710 ~~~~~~~~~-l~~~~~----~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~---~~~~~~----~----------- 765 (2158)
.....+... |...+. ..++..++ +.+.|.||.=.+.-..++..+.+... ...... .
T Consensus 610 qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~A 689 (941)
T KOG0389|consen 610 QERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAA 689 (941)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHh
Confidence 001112211 222222 22333333 45777787755444444444333220 000000 0
Q ss_pred ---c------------------ccc---CchhHHHHHhh------------h---h--------------ccCcchhhhh
Q 000114 766 ---F------------------LKE---DSVSREILQSH------------T---D--------------MVKSNDLKDL 792 (2158)
Q Consensus 766 ---~------------------~~~---~~~~~~~l~~~------------~---~--------------~~~~~~l~~l 792 (2158)
+ ++. ...+...+.+. + . ..+...|+.+
T Consensus 690 nHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~L 769 (941)
T KOG0389|consen 690 NHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKEL 769 (941)
T ss_pred cChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHH
Confidence 0 000 00000000000 0 0 0011122222
Q ss_pred ------------------------------ccCCeEEecCCCCHHHHHHHHHHHhCC-Cce-EEEechhhhhccCCCceE
Q 000114 793 ------------------------------LPYGFAIHHAGMTRGDRQLVEDLFGDG-HVQ-VLVSTATLAWGVNLPAHT 840 (2158)
Q Consensus 793 ------------------------------l~~gv~~hHagl~~~~R~~v~~~F~~g-~i~-VLVaT~tla~GVdlP~v~ 840 (2158)
+.+++.-+-|...-.+|..+++.|... .+. .|.+|-+.+-|||+-+.+
T Consensus 770 Lp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An 849 (941)
T KOG0389|consen 770 LPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCAN 849 (941)
T ss_pred HHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccc
Confidence 234455567888899999999999754 343 578999999999999999
Q ss_pred EEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHH-HHHhhcCCCcccchhh
Q 000114 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY-YLSLMNQQLPIESQFV 909 (2158)
Q Consensus 841 vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~-y~~ll~~~~pieS~l~ 909 (2158)
+||.++.-|+|-. =.|.--||-|.|..+.-.++.+.+.+..+. ...+.+..+-+|+.+.
T Consensus 850 ~VIihD~dFNP~d----------D~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt 909 (941)
T KOG0389|consen 850 TVIIHDIDFNPYD----------DKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLT 909 (941)
T ss_pred eEEEeecCCCCcc----------cchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhc
Confidence 9999887777753 457777777777667777888888877654 4445555555555544
No 322
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.20 E-value=6.9e-05 Score=104.50 Aligned_cols=140 Identities=18% Similarity=0.177 Sum_probs=86.5
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhccc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~ 1437 (2158)
..-+|.=-||||||+.....+-..... .+.+++++|+=+++|-.|..+.+. .|+....... -......-.+.++
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~-~~~~~~~~~~--~~~s~~~Lk~~l~ 347 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQ-SFGKVAFNDP--KAESTSELKELLE 347 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHH-HHHHhhhhcc--cccCHHHHHHHHh
Confidence 458999999999998875544333333 334599999999999999999998 5654311111 1111111123333
Q ss_pred --CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1438 --KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1438 --~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
...|||+|-++|............-++=-+||+||||+-- .| ....+|+... ++...+|+|.|+--
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G----~~~~~~~~~~----~~a~~~gFTGTPi~ 415 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YG----ELAKLLKKAL----KKAIFIGFTGTPIF 415 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--cc----HHHHHHHHHh----ccceEEEeeCCccc
Confidence 3489999999997665442111112233479999999642 22 1333344332 25889999999743
No 323
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.19 E-value=0.00012 Score=102.25 Aligned_cols=138 Identities=19% Similarity=0.180 Sum_probs=82.0
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2158)
.-+|.=-||||||+.-...+-..+.. ...+++++|+-++.|-.|+.+.|......... +. -..+...-+
T Consensus 275 ~G~IWHtqGSGKTlTm~~~A~~l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~-~~-~~~s~~~Lk 343 (962)
T COG0610 275 GGYIWHTQGSGKTLTMFKLARLLLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN-DP-KAESTSELK 343 (962)
T ss_pred ceEEEeecCCchHHHHHHHHHHHHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh-cc-cccCHHHHH
Confidence 57999999999998765444333322 24569999999999999999999986442211 11 111111111
Q ss_pred hhhc--cccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 593 QQIE--ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 593 ~~~~--~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
+.+. ...|||||-.|+............-.+=-+||+||||+-.. |..- .++ ...-++...+|+|.|+
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--G~~~----~~~----~~~~~~a~~~gFTGTP 413 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--GELA----KLL----KKALKKAIFIGFTGTP 413 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--cHHH----HHH----HHHhccceEEEeeCCc
Confidence 2222 35899999999854443321111112223789999997532 2111 111 1123457889999994
Q ss_pred C
Q 000114 671 P 671 (2158)
Q Consensus 671 p 671 (2158)
-
T Consensus 414 i 414 (962)
T COG0610 414 I 414 (962)
T ss_pred c
Confidence 3
No 324
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.16 E-value=7.2e-05 Score=90.15 Aligned_cols=153 Identities=21% Similarity=0.235 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHcCCC----cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~----nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|-|+|.+-+..+....+ --++.-.-|.|||..++-.++..+. +...++++|+.|| .|+.+++
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~------------ra~tLVvaP~VAl-mQW~nEI 250 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD------------RAPTLVVAPTVAL-MQWKNEI 250 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc------------cCCeeEEccHHHH-HHHHHHH
Confidence 345667766654433221 1477789999999887666655332 2358999999997 5677777
Q ss_pred HhhcccCCcEEEEEeCCCcc-CHhhhccccEEEcchhHHHHHHhccC-----------CCccccccc--eEEeecccccc
Q 000114 571 SNRLQMYDVKVRELSGDQTL-TRQQIEETQIIVTTPEKWDIITRKSG-----------DRTYTQLVK--LLIIDEIHLLH 636 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~-~~~~~~~~~IiV~TPekld~l~r~~~-----------~~~~l~~v~--lIIiDEaH~l~ 636 (2158)
.+... -.++|..++|.... +-+...+++++.||...+....|+.. ..+.+..++ -||+||||.+.
T Consensus 251 ~~~T~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 251 ERHTS-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIK 329 (791)
T ss_pred HHhcc-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccc
Confidence 76554 35788999996543 34567899999999998877777621 233444444 59999999987
Q ss_pred cCChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 637 d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
+-+.....++.+ + + ..+-.+||.|.
T Consensus 330 ~R~snTArAV~~-L----~----tt~rw~LSGTP 354 (791)
T KOG1002|consen 330 DRQSNTARAVFA-L----E----TTYRWCLSGTP 354 (791)
T ss_pred cccccHHHHHHh-h----H----hhhhhhccCCc
Confidence 644333333322 1 1 12347889983
No 325
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.04 E-value=0.0009 Score=84.23 Aligned_cols=302 Identities=15% Similarity=0.191 Sum_probs=179.8
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHhhccc-------------CCcE-------EE-------------EEeCCCc------
Q 000114 549 SNYKIVYVAPMKALVAEVVGNLSNRLQM-------------YDVK-------VR-------------ELSGDQT------ 589 (2158)
Q Consensus 549 ~~~kil~iaP~kaLa~q~~~~~~~~~~~-------------~gi~-------v~-------------~l~Gd~~------ 589 (2158)
..+|||+|+|+|.-|-++++.+.+++.. +|+. .. .+.|..+
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 5679999999999999999988876643 1200 00 0111110
Q ss_pred --cCHh------hhccccEEEcchhHHHHHHh----ccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHH---
Q 000114 590 --LTRQ------QIEETQIIVTTPEKWDIITR----KSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI--- 654 (2158)
Q Consensus 590 --~~~~------~~~~~~IiV~TPekld~l~r----~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~--- 654 (2158)
+++. ...++|||||+|=-+..+.. +..+..+++.+.++|||.+|.+.=..-..+..++..+-.+-
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 0000 02368999999987754444 34566789999999999999876444444555555432110
Q ss_pred --------------hhccccccEEEEccccCChHHHHHHHhc--cccCceEEecCCc--------ccccceeEEEeeccC
Q 000114 655 --------------ETTKEHIRLVGLSATLPNYEDVALFLRV--NLEKGLFYFDNSY--------RPVPLSQQYIGIQVK 710 (2158)
Q Consensus 655 --------------~~~~~~~riv~lSATlpn~~dv~~~l~~--~~~~~~~~f~~~~--------rpv~l~~~~~~~~~~ 710 (2158)
.....-.|.|++|+... .++...++. ....|...+...+ -.+++.|.+..+...
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~--pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT--PEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCC--HHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 00122458999999864 233333332 1112222222211 234667777766655
Q ss_pred Ch----hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCc
Q 000114 711 KP----LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786 (2158)
Q Consensus 711 ~~----~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 786 (2158)
.. ..+++...+.++..+......+.+|||++|=-+=.++-..|......
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~s--------------------------- 326 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENIS--------------------------- 326 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCe---------------------------
Confidence 43 33455555555555543334678999999988877777777643322
Q ss_pred chhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhh--hhccCCCceEEEEecccccCCCCCccccCCHHHH
Q 000114 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL--AWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 787 ~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tl--a~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
++..|--.+..+-...-..|.+|+.+||+-|-=+ =+-..+.++..||- |.+|.. +.=..++
T Consensus 327 ----------F~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF----Y~~P~~---p~fY~El 389 (442)
T PF06862_consen 327 ----------FVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF----YGPPEN---PQFYSEL 389 (442)
T ss_pred ----------EEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE----ECCCCC---hhHHHHH
Confidence 3444667778888888999999999999999643 33456777778887 555541 1123455
Q ss_pred HHhhcccCC-CCCCCccEEEEEcCCCcHHHHHH
Q 000114 865 MQMLGRAGR-PQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 865 ~Qr~GRAGR-~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
+.+++.... .+....+.|.++++.-+.-.+..
T Consensus 390 ~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LEr 422 (442)
T PF06862_consen 390 LNMLDESSGGEVDAADATVTVLYSKYDALRLER 422 (442)
T ss_pred HhhhcccccccccccCceEEEEecHhHHHHHHH
Confidence 555554433 11223467788877765444443
No 326
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.00025 Score=86.90 Aligned_cols=350 Identities=18% Similarity=0.188 Sum_probs=196.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCC---ch--HHHHHHHHHHHHHhccCC----------C--C--------CCCC
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGA---GK--TNVAVLTILQQLALNRND----------D--G--------SFNH 548 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGs---GK--T~~a~l~il~~l~~~~~~----------~--~--------~~~~ 548 (2158)
..+++.|.+.+..+++=.+ ++ .||++ |+ +-+|.+-+++++.+.+.. . | ....
T Consensus 215 ~pltalQ~~L~~~m~~YrD-l~--y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRD-LL--YPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred CcchHHHHHHHHHHHhhhh-hc--cccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 4689999999988776555 44 35544 44 567888888877653310 0 0 0123
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHhhcccCCc---E-------EEEEeCCCcc----------------------------
Q 000114 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDV---K-------VRELSGDQTL---------------------------- 590 (2158)
Q Consensus 549 ~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi---~-------v~~l~Gd~~~---------------------------- 590 (2158)
..+|||+++|+|+-|-.+++.+..++....- . -+++.|+...
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 5689999999999999999999887532110 0 1223332110
Q ss_pred -CHhh------hccccEEEcchhHHHHHHh----ccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhh---
Q 000114 591 -TRQQ------IEETQIIVTTPEKWDIITR----KSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET--- 656 (2158)
Q Consensus 591 -~~~~------~~~~~IiV~TPekld~l~r----~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~--- 656 (2158)
+++. ...++|+||+|=-+.++.. +..+..+++.+.++|||-+|.+.-..-..+..|+..+-.+-..
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccC
Confidence 1111 2368999999988866655 2345678999999999999988765544555555544211000
Q ss_pred --------------ccccccEEEEccccCChHHHHHHHhccc--cCceEEec-----CCcc--cccceeEEEeeccCChh
Q 000114 657 --------------TKEHIRLVGLSATLPNYEDVALFLRVNL--EKGLFYFD-----NSYR--PVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 657 --------------~~~~~riv~lSATlpn~~dv~~~l~~~~--~~~~~~f~-----~~~r--pv~l~~~~~~~~~~~~~ 713 (2158)
.....|.+++|+-.. .++..++.... ..|.+.+. ++.+ -+|+.+.+..+......
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~--~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSH--PLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSII 529 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhcc--HHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcc
Confidence 001124455554421 22333322110 11111111 1111 23444444444333322
Q ss_pred HHHHHhhHHHHHHHHHHhC---CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 714 QRFQLMNDLCYEKVVAVAG---KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
....+--......|+-... ..-+||+++|--+-.++-.++.+.......+
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i--------------------------- 582 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMI--------------------------- 582 (698)
T ss_pred cCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHH---------------------------
Confidence 2111111111222222111 3468999999888777777776654322211
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhh--hhccCCCceEEEEecccccCCCCCccccCCHHHHHHhh
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL--AWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tl--a~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2158)
|---+...=...-+.|-.|..+||+-|.-+ =+--++.++.-||.+..|-+|. =..+++.|.
T Consensus 583 ----------~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~-------FYsEiinm~ 645 (698)
T KOG2340|consen 583 ----------NEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPH-------FYSEIINMS 645 (698)
T ss_pred ----------hhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcH-------HHHHHHhhh
Confidence 111122233445678999999999999643 4556888998899855444443 356899999
Q ss_pred cccCCCC--CCCccEEEEEcCCCcHH
Q 000114 869 GRAGRPQ--YDSYGEGIIITGHSELR 892 (2158)
Q Consensus 869 GRAGR~g--~d~~G~~iil~~~~~~~ 892 (2158)
||+.-.| ....-.|.++++.-+.-
T Consensus 646 ~k~~~~gn~d~d~~t~~ilytKyD~i 671 (698)
T KOG2340|consen 646 DKTTSQGNTDLDIFTVRILYTKYDRI 671 (698)
T ss_pred hhhhccCCccccceEEEEEeechhhH
Confidence 9975433 33445677777765533
No 327
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.89 E-value=7.7e-05 Score=88.40 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|++.|-.+.-.+..| -|+...||=|||+++.+++.-....+ ..|=+++...-||..=++.+..++
T Consensus 77 ~p~~vQll~~l~L~~G---~laEm~TGEGKTli~~l~a~~~AL~G-----------~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 77 RPYDVQLLGALALHKG---RLAEMKTGEGKTLIAALPAALNALQG-----------KGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp ---HHHHHHHHHHHTT---SEEEESTTSHHHHHHHHHHHHHHTTS-----------S-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhhhhcccc---eeEEecCCCCcHHHHHHHHHHHHHhc-----------CCcEEEeccHHHhhccHHHHHHHH
Confidence 6788888887655333 49999999999999988876655443 368888999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCH-hhhccccEEEcchhHH--HHHHhccCC---CccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~~---~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+..+++.+... +..-.++|+.+|...+ |.+..+... ........++||||||.+
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred HHhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 999999999999887443 3455789999999986 656554321 122467899999999965
No 328
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.86 E-value=0.00065 Score=85.97 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHcC----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.+-|.|..++..+.-. ..--|+...-|-|||+.-+-.|+..-.......+...... +.++|+|. +|..|+..++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 6788999998765532 1236778889999999766555554332222222222233 69999996 7889999999
Q ss_pred HhhcccCCcEEEEEeCCC--ccCHhhhccccEEEcchhHHHH----HHhccCCCcccccc--ceEEeecccccccCChhh
Q 000114 571 SNRLQMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDI----ITRKSGDRTYTQLV--KLLIIDEIHLLHDNRGPV 642 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~--~~~~~~~~~~~IiV~TPekld~----l~r~~~~~~~l~~v--~lIIiDEaH~l~d~rg~~ 642 (2158)
.+++...-++|..++|.. ....+.+..++|+|||..-... =+...+....+..| ..||+||||.+-+.....
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~ 482 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQC 482 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhH
Confidence 999998889999999986 3445667899999999874211 01122223344444 569999999987543322
Q ss_pred HHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 643 LESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
-. .+.++ ....| -++|+|.
T Consensus 483 S~-AVC~L-------~a~~R-WclTGTP 501 (901)
T KOG4439|consen 483 SK-AVCKL-------SAKSR-WCLTGTP 501 (901)
T ss_pred HH-HHHHH-------hhcce-eecccCc
Confidence 22 23333 22233 6788883
No 329
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.83 E-value=0.00079 Score=89.78 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHH--hcC-CCcEEEEccCCchhHHHHHHHHHH-HHHhhc---CCCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVL--YNT-DDNVLVAAPTGSGKTICSEFAILR-NHQKAS---ETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l--~~~-~~nvli~ApTGSGKTl~a~l~il~-~l~~~~---~~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
.++.+|.+-++-+ ++. +=+-|+|-.-|=|||+...--+.. +..+.. ....+-.+||+|. .|+.-+..+|. +
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~-k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVK-K 1052 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHH-H
Confidence 5778898877653 232 336899999999999877332222 222100 0111237899997 78888889998 4
Q ss_pred hcCCCCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHH
Q 000114 1414 FGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isr 1490 (2158)
|... ++|..+.|..... ....++++|||++.+.+-+=.-. ..-....++|+||-|-|-..+ ++
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~----l~~~~wNYcVLDEGHVikN~k--------tk 1118 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY----LIKIDWNYCVLDEGHVIKNSK--------TK 1118 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH----HHhcccceEEecCcceecchH--------HH
Confidence 5443 6777788865443 33556779999998765321111 112356789999999886433 22
Q ss_pred HHHHHhhcCCCceEEEeccCCCC
Q 000114 1491 MRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+....+++..+.|+|+..+++.|
T Consensus 1119 l~kavkqL~a~hRLILSGTPIQN 1141 (1549)
T KOG0392|consen 1119 LTKAVKQLRANHRLILSGTPIQN 1141 (1549)
T ss_pred HHHHHHHHhhcceEEeeCCCccc
Confidence 22333333446676655555555
No 330
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.00044 Score=91.63 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=83.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2158)
.-+.-.-||=|||+++.+|+.-....+ ..+.++...-=||.--......++..+|++|+....+++...
T Consensus 95 g~iaEM~TGEGKTL~atlp~ylnaL~g-----------kgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~e 163 (822)
T COG0653 95 GDIAEMRTGEGKTLVATLPAYLNALAG-----------KGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEE 163 (822)
T ss_pred CceeeeecCCchHHHHHHHHHHHhcCC-----------CCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHH
Confidence 368889999999999999976544332 246677777778888888888888999999999988886654
Q ss_pred -hhhccccEEEcchhHH--HHHHhcc---CCCccccccceEEeeccccc
Q 000114 593 -QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 593 -~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l 635 (2158)
+..-.++|..+|-..+ |.+.-.. .+..+.....+-|+||++.+
T Consensus 164 k~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 164 KRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred HHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 4456899999998775 4443221 22344556788899999865
No 331
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.79 E-value=0.0002 Score=96.94 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=84.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH-----hhcc----cCCcEEE
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS-----NRLQ----MYDVKVR 582 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~-----~~~~----~~gi~v~ 582 (2158)
-|+.+.++||+|||.+|+-+|+....... ..+.|++||+.|+-..+...+. ..|. ...+...
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~---------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~ 130 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG---------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELY 130 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC---------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEE
Confidence 37999999999999999999988776642 3489999999998777665543 2222 1123444
Q ss_pred EEeCCC-------ccCHh----------hhccccEEEcchhHHHH--HHhccCC------C-cc---cccc-ceEEeecc
Q 000114 583 ELSGDQ-------TLTRQ----------QIEETQIIVTTPEKWDI--ITRKSGD------R-TY---TQLV-KLLIIDEI 632 (2158)
Q Consensus 583 ~l~Gd~-------~~~~~----------~~~~~~IiV~TPekld~--l~r~~~~------~-~~---l~~v-~lIIiDEa 632 (2158)
.+.+.. ..... .....+|+|+|-+.+.. ..+...+ . .. +... -.||+||.
T Consensus 131 ~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEP 210 (986)
T PRK15483 131 VINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEP 210 (986)
T ss_pred EEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECC
Confidence 444332 11111 01146899999997732 2111101 0 11 1222 27899999
Q ss_pred cccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000114 633 HLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2158)
Q Consensus 633 H~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn 672 (2158)
|++... +..++.| . ... +.-++.+|||.++
T Consensus 211 h~~~~~-~k~~~~i-~-------~ln-pl~~lrysAT~~~ 240 (986)
T PRK15483 211 HRFPRD-NKFYQAI-E-------ALK-PQMIIRFGATFPD 240 (986)
T ss_pred CCCCcc-hHHHHHH-H-------hcC-cccEEEEeeecCC
Confidence 998432 2234433 2 223 2235669999986
No 332
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.69 E-value=0.00018 Score=97.34 Aligned_cols=143 Identities=16% Similarity=0.219 Sum_probs=84.7
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH-----HHhcCC-CC--cEEEEEcCCc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE-----IKFGQG-LG--MRVVELTGET 1429 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~-----~~f~~~-~g--~~v~~ltG~~ 1429 (2158)
-|+.+.++||+|||.+|+-.|+..... .+..+.|++||+.++-..+.+-+. ..|... .| +....+.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~---~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK---YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 479999999999999998888877666 222389999999999877765543 334332 22 3334444322
Q ss_pred ---------chhhhcc--------cCCcEEEeCHHHHHHH-H-hhh------hcc-cc---ccce-eEEEecccccccCC
Q 000114 1430 ---------AMDLKLL--------EKGQIIISTPEKWDAL-S-RRW------KQR-KY---VQQV-SLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1430 ---------~~~~~~l--------~~~~IIV~TPe~l~~l-~-r~~------~~~-~~---l~~v-~llIiDEaH~l~~~ 1479 (2158)
....+.+ ..-+|.|+|-+.+..- . +.. .+. .. ++.. -.||+||.|++...
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 1111111 1238999999987541 1 111 011 11 2222 36899999998542
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+..++.+ .. ++ +.-++.+|||.++
T Consensus 217 -~k~~~~i----~~----ln-pl~~lrysAT~~~ 240 (986)
T PRK15483 217 -NKFYQAI----EA----LK-PQMIIRFGATFPD 240 (986)
T ss_pred -hHHHHHH----Hh----cC-cccEEEEeeecCC
Confidence 2233322 21 22 3345679999976
No 333
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.66 E-value=0.00026 Score=83.95 Aligned_cols=128 Identities=18% Similarity=0.156 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|++.|-.+.-.+.+ + -|+...||=|||+++.+|+.-.... +. .+-+++...-||..=++.+...|. .+|+
T Consensus 77 ~p~~vQll~~l~L~~-G--~laEm~TGEGKTli~~l~a~~~AL~---G~--~V~vvT~NdyLA~RD~~~~~~~y~-~LGl 147 (266)
T PF07517_consen 77 RPYDVQLLGALALHK-G--RLAEMKTGEGKTLIAALPAALNALQ---GK--GVHVVTSNDYLAKRDAEEMRPFYE-FLGL 147 (266)
T ss_dssp ---HHHHHHHHHHHT-T--SEEEESTTSHHHHHHHHHHHHHHTT---SS---EEEEESSHHHHHHHHHHHHHHHH-HTT-
T ss_pred cccHHHHhhhhhccc-c--eeEEecCCCCcHHHHHHHHHHHHHh---cC--CcEEEeccHHHhhccHHHHHHHHH-Hhhh
Confidence 566666666655533 2 3999999999999998877655544 33 677889999999998888885554 5799
Q ss_pred EEEEEcCCcchh-hhcccCCcEEEeCHHHHHH-HHhh-hhcc---ccccceeEEEeccccccc
Q 000114 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWDA-LSRR-WKQR---KYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1421 ~v~~ltG~~~~~-~~~l~~~~IIV~TPe~l~~-l~r~-~~~~---~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+..+++.+.. .+..-.++|+++|...+.. .+|. +... ...+...++||||||.+.
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999887654 3345567999999998742 3432 2211 124678999999999654
No 334
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.64 E-value=0.004 Score=79.13 Aligned_cols=173 Identities=20% Similarity=0.221 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHhc----CCCcEEEEccCCchhHHHHHHHHHHHHHh-h-----cCCCceEEEEEcccHHHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYN----TDDNVLVAAPTGSGKTICSEFAILRNHQK-A-----SETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~----~~~nvli~ApTGSGKTl~a~l~il~~l~~-~-----~~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
.+-|.|..++.-+.- ...--|+...-|-|||+...-.|+..-.. . .+... +++||||- +|+.|++.++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 678899999877653 22347888899999998654333322111 1 01111 58999996 7889999999
Q ss_pred HHHhcCCCCcEEEEEcCCcc--hhhhcccCCcEEEeCHHHHHH----HHhhhhccccccce--eEEEecccccccCCCCC
Q 000114 1411 EIKFGQGLGMRVVELTGETA--MDLKLLEKGQIIISTPEKWDA----LSRRWKQRKYVQQV--SLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~--~~~~~l~~~~IIV~TPe~l~~----l~r~~~~~~~l~~v--~llIiDEaH~l~~~~g~ 1482 (2158)
.+++... -++|..++|... ...+.++..||||+|..-... -+...+....+.+| .-||+||||.+-+.. .
T Consensus 403 ~~rl~~n-~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~-t 480 (901)
T KOG4439|consen 403 ARRLEQN-ALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSN-T 480 (901)
T ss_pred HHHHhhc-ceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccc-h
Confidence 9888765 689999999874 346788899999999765433 11121222233343 569999999986543 1
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCC-CC-hH---HHHHHhccCC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSL-AN-AK---DLGEWIGATS 1525 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl-~n-~~---dl~~wl~~~~ 1525 (2158)
.-...+.+++. ..| -++|+|+ .| .- .+..||++.+
T Consensus 481 q~S~AVC~L~a-------~~R-WclTGTPiqNn~~DvysLlrFLr~~p 520 (901)
T KOG4439|consen 481 QCSKAVCKLSA-------KSR-WCLTGTPIQNNLWDVYSLLRFLRCPP 520 (901)
T ss_pred hHHHHHHHHhh-------cce-eecccCccccchhHHHHHHHHhcCCC
Confidence 22234444443 334 4666664 33 22 3445665554
No 335
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.0016 Score=80.19 Aligned_cols=368 Identities=15% Similarity=0.211 Sum_probs=190.0
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchh--HHHHHHHHHHHHHhhc------------C--------------CCce
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGK--TICSEFAILRNHQKAS------------E--------------TGVM 1391 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGK--Tl~a~l~il~~l~~~~------------~--------------~~~~ 1391 (2158)
..+++.|.+.|..+.+-.|-......-|.|+ +-+|.+-+++|+.+.. . -..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 4789999999999877566222223334455 5677788888876430 0 0137
Q ss_pred EEEEEcccHHHHHHHHHHHHHHhc-CCCCcE-E-------EEEcCCcch---------h---------------------
Q 000114 1392 RAVYIAPLEALAKERYRDWEIKFG-QGLGMR-V-------VELTGETAM---------D--------------------- 1432 (2158)
Q Consensus 1392 ~~v~IaP~raLa~q~~~~~~~~f~-~~~g~~-v-------~~ltG~~~~---------~--------------------- 1432 (2158)
++|+++|+|+-|-.+.+.+...+. ..-|+. | +.+.|++.. +
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 999999999999999998886633 221111 1 122221100 0
Q ss_pred -----hhcccCCcEEEeCHHHHHHHHhhh----hccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC---
Q 000114 1433 -----LKLLEKGQIIISTPEKWDALSRRW----KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN--- 1500 (2158)
Q Consensus 1433 -----~~~l~~~~IIV~TPe~l~~l~r~~----~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~--- 1500 (2158)
...+.++||+||+|=-+-.++... +....++.|.++|||-+|.+.-. .||.+..-+..+-.+ |.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q---NwEhl~~ifdHLn~~-P~k~h 450 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ---NWEHLLHIFDHLNLQ-PSKQH 450 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh---hHHHHHHHHHHhhcC-ccccc
Confidence 012346799999998776666521 12337899999999999987643 355555444433222 21
Q ss_pred -----CceE-------------EEeccCCCChHHHHHHhccC---CCceEecCC-----CCc--ccccEEEEecccccc-
Q 000114 1501 -----KIRI-------------VALSTSLANAKDLGEWIGAT---SHGLFNFPP-----GVR--PVPLEIHIQGVDITN- 1551 (2158)
Q Consensus 1501 -----~~ri-------------V~lSATl~n~~dl~~wl~~~---~~~i~~f~~-----~~r--pv~l~~~i~~~~~~~- 1551 (2158)
.+|. +++|+-- + .++...+... -.+...+++ ..+ .+|+...++.+....
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~-~-~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si 528 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYS-H-PLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSI 528 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhc-c-HHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCc
Confidence 1222 3333221 1 1111111110 001111110 011 111111111111111
Q ss_pred ---hHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHH
Q 000114 1552 ---FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEML 1628 (2158)
Q Consensus 1552 ---~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L 1628 (2158)
...++.-........+.. .....+|||+||--.-..+-..+..
T Consensus 529 ~~~~D~RFkyFv~~ImPq~~k--~t~s~~LiyIPSYfDFVRvRNy~K~-------------------------------- 574 (698)
T KOG2340|consen 529 IETPDARFKYFVDKIMPQLIK--RTESGILIYIPSYFDFVRVRNYMKK-------------------------------- 574 (698)
T ss_pred ccCchHHHHHHHHhhchhhcc--cccCceEEEecchhhHHHHHHHhhh--------------------------------
Confidence 111111111111111111 1123479999997654443332211
Q ss_pred HHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCcc--ccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHh
Q 000114 1629 KATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSM--CWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706 (2158)
Q Consensus 1629 ~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~l--a~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr 1706 (2158)
+.+. ...+|.--+...-.+.-+.|-.|..+||+-|--+ -+-.++.++.-|| +|.+..+ |-=..+++.|
T Consensus 575 -e~i~--F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vV----fYqpP~~---P~FYsEiinm 644 (698)
T KOG2340|consen 575 -EEIS--FVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVV----FYQPPNN---PHFYSEIINM 644 (698)
T ss_pred -hhcc--hHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEE----EecCCCC---cHHHHHHHhh
Confidence 1111 1122333334444566788999999999999753 3456778877777 5665532 2227889999
Q ss_pred hccCCCCC--CCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHH
Q 000114 1707 MGHASRPL--LDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLT 1775 (2158)
Q Consensus 1707 ~GRaGR~g--~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~ 1775 (2158)
+||+.-.| ......|.+++..-+. -.|...+-.|-++....++++...|+|
T Consensus 645 ~~k~~~~gn~d~d~~t~~ilytKyD~------------------i~Le~ivGterAA~l~~~kk~v~~f~t 697 (698)
T KOG2340|consen 645 SDKTTSQGNTDLDIFTVRILYTKYDR------------------IRLENIVGTERAAALMSGKKEVYEFVT 697 (698)
T ss_pred hhhhhccCCccccceEEEEEeechhh------------------HHHHHhhhHHHHHHHhccchhhhhhhc
Confidence 99976544 3344566666655331 123445555666666666666655543
No 336
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.62 E-value=0.00017 Score=85.39 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHH-----HhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNH-----QKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l-----~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
++|+-|.+|+..++....-.+|.||.|+|||.+..-.+...+ .....++ ++++++|+.+-+++....+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~--~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGK--KILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS---EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccc--cceeecCCchhHHHHHHHHHh
Confidence 478999999999987544489999999999965543333331 1112344 899999999999999999885
No 337
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.61 E-value=0.021 Score=72.28 Aligned_cols=251 Identities=15% Similarity=0.182 Sum_probs=137.4
Q ss_pred ccCCcEEEeCHHHHHHHHhh----hhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHh---------------
Q 000114 1436 LEKGQIIISTPEKWDALSRR----WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS--------------- 1496 (2158)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~----~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~--------------- 1496 (2158)
..++|||||+|=-+-..... -.....+++|.++|+|.||.+.-.. |+.+..-+..+-.
T Consensus 129 Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN---W~Hv~~v~~~lN~~P~~~~~~DfsRVR~ 205 (442)
T PF06862_consen 129 FYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN---WEHVLHVFEHLNLQPKKSHDTDFSRVRP 205 (442)
T ss_pred cccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh---HHHHHHHHHHhccCCCCCCCCCHHHHHH
Confidence 34679999999776554442 2234479999999999999775322 3333222222211
Q ss_pred -----hcCCCceEEEeccCCCChHHHHHHhcc---CCCceEecCCCC--------cccccEEEEecccccch----HHHH
Q 000114 1497 -----QVENKIRIVALSTSLANAKDLGEWIGA---TSHGLFNFPPGV--------RPVPLEIHIQGVDITNF----EARM 1556 (2158)
Q Consensus 1497 -----~~~~~~riV~lSATl~n~~dl~~wl~~---~~~~i~~f~~~~--------rpv~l~~~i~~~~~~~~----~~~~ 1556 (2158)
+...-.|.|++|+.... + +...+.. ...+...+.+.. -.+++...+..++.... ..++
T Consensus 206 w~Ldg~a~~~RQtii~S~~~~p-e-~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf 283 (442)
T PF06862_consen 206 WYLDGQAKYYRQTIIFSSFQTP-E-INSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARF 283 (442)
T ss_pred HHHcCcchheeEeEEecCCCCH-H-HHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHH
Confidence 11124688999987642 1 2221111 111111111111 12233344444443332 2333
Q ss_pred HhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccE
Q 000114 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2158)
Q Consensus 1557 ~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv 1636 (2158)
....+..+..+.. -...+.+|||+||--.=..+-..|. .-....
T Consensus 284 ~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk-----------------------------------~~~~sF 327 (442)
T PF06862_consen 284 KYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLK-----------------------------------KENISF 327 (442)
T ss_pred HHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHH-----------------------------------hcCCeE
Confidence 3344444444443 2466789999999765433333321 122346
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCceEEEecCcc--ccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC-C
Q 000114 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSM--CWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR-P 1713 (2158)
Q Consensus 1637 ~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~l--a~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR-~ 1713 (2158)
+.+|.-.+..+-.+.-..|..|+.+||+-|-=+ =+-..+.++..|| +|.+..+ |-=..+++.|++.... .
T Consensus 328 ~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~vi----FY~~P~~---p~fY~El~n~~~~~~~~~ 400 (442)
T PF06862_consen 328 VQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVI----FYGPPEN---PQFYSELLNMLDESSGGE 400 (442)
T ss_pred EEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEE----EECCCCC---hhHHHHHHhhhccccccc
Confidence 778888899999999999999999999999642 2334566666666 5555432 1115566666655443 1
Q ss_pred CCCCceEEEEEecCChHHHHH
Q 000114 1714 LLDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~~~~~~~ 1734 (2158)
+....+.|.++++.-+.-.++
T Consensus 401 ~~~~~~~~~~lysk~D~~~LE 421 (442)
T PF06862_consen 401 VDAADATVTVLYSKYDALRLE 421 (442)
T ss_pred ccccCceEEEEecHhHHHHHH
Confidence 113456777777665443333
No 338
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.56 E-value=0.00031 Score=83.19 Aligned_cols=75 Identities=32% Similarity=0.380 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
+||+-|.+|+..++....-.+|.||.|+|||.+..-.+...+.... ......+.++++++|+.+-+.++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4799999999988876544899999999999655443333311000 00011345899999999999999999988
No 339
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.56 E-value=0.00027 Score=88.56 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
+|..+||.-|+.|+.++|...= .||.+|.|+|||.+..-.+.+.+..+ .+.|++++|..--+.|+++.+
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rpl-sLIQGPPGTGKTvtsa~IVyhl~~~~----------~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRPL-SLIQGPPGTGKTVTSATIVYHLARQH----------AGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred CCchhhchHHHHHHHHHHcCCc-eeeecCCCCCceehhHHHHHHHHHhc----------CCceEEEcccchhHHHHHHHH
Confidence 6788999999999999987644 79999999999998877777766654 347999999999999999888
Q ss_pred HhhcccCCcEEEEEeC
Q 000114 571 SNRLQMYDVKVRELSG 586 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~G 586 (2158)
.+. |++|..+..
T Consensus 475 h~t----gLKVvRl~a 486 (935)
T KOG1802|consen 475 HKT----GLKVVRLCA 486 (935)
T ss_pred Hhc----CceEeeeeh
Confidence 763 677766544
No 340
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.54 E-value=0.00013 Score=83.12 Aligned_cols=147 Identities=24% Similarity=0.299 Sum_probs=75.0
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH---HHHHHHhcC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY---RDWEIKFGQ 1416 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~---~~~~~~f~~ 1416 (2158)
.-.|+-|..++.++++ .+.+++.||.|||||+++..+.++.+.. ..-. +++|+-|..+.-.++- -...+++..
T Consensus 3 ~p~~~~Q~~~~~al~~-~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~--kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN-NDLVIVNGPAGTGKTFLALAAALELVKE-GEYD--KIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp ---SHHHHHHHHHHHH--SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-S--EEEEEE-S--TT----SS---------T
T ss_pred cCCCHHHHHHHHHHHh-CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCc--EEEEEecCCCCccccccCCCCHHHHHHH
Confidence 3468899999999995 6679999999999999999999988877 3444 8899988865411110 000111110
Q ss_pred CCC-c--EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHH
Q 000114 1417 GLG-M--RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1417 ~~g-~--~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (2158)
... + ....+.+. ..-...+.++.|-+..+.- +| ++. ++ -.+||+|||+.+. ...++.
T Consensus 79 ~~~p~~d~l~~~~~~-~~~~~~~~~~~Ie~~~~~~----iR---Grt-~~-~~~iIvDEaQN~t----------~~~~k~ 138 (205)
T PF02562_consen 79 YLRPIYDALEELFGK-EKLEELIQNGKIEIEPLAF----IR---GRT-FD-NAFIIVDEAQNLT----------PEELKM 138 (205)
T ss_dssp TTHHHHHHHTTTS-T-TCHHHHHHTTSEEEEEGGG----GT---T---B--SEEEEE-SGGG------------HHHHHH
T ss_pred HHHHHHHHHHHHhCh-HhHHHHhhcCeEEEEehhh----hc---Ccc-cc-ceEEEEecccCCC----------HHHHHH
Confidence 000 0 00000011 1112234456677776542 22 221 23 2899999999874 345566
Q ss_pred HHhhcCCCceEEEeccC
Q 000114 1494 IASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1494 i~~~~~~~~riV~lSAT 1510 (2158)
+..+.+.+.++|++.-+
T Consensus 139 ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHTTB-TT-EEEEEE--
T ss_pred HHcccCCCcEEEEecCc
Confidence 66666778888887543
No 341
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.50 E-value=0.00041 Score=79.15 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
++..|.-|..++.+++ ..+.+++.||.|+|||+.++...++.+..+.. -|++|+-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~---------~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGEY---------DKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS----------SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC---------cEEEEEecCCCC
Confidence 3457899999999888 55679999999999999999999999876432 389999888754
No 342
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.45 E-value=0.0028 Score=84.38 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000114 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~ 1421 (2158)
++|+=.|.+-.+.. ...-+.-+-||=|||+++.+|+.-.-.. +. .+-++...-=||.--..... .+-..+|++
T Consensus 79 ~~~~dVQliG~i~l-h~g~iaEM~TGEGKTL~atlp~ylnaL~---gk--gVhvVTvNdYLA~RDae~m~-~l~~~LGls 151 (822)
T COG0653 79 MRHFDVQLLGGIVL-HLGDIAEMRTGEGKTLVATLPAYLNALA---GK--GVHVVTVNDYLARRDAEWMG-PLYEFLGLS 151 (822)
T ss_pred CChhhHHHhhhhhh-cCCceeeeecCCchHHHHHHHHHHHhcC---CC--CcEEeeehHHhhhhCHHHHH-HHHHHcCCc
Confidence 44444555555432 3346889999999999999988633222 33 45566666666665555444 444457999
Q ss_pred EEEEcCCcchh-hhcccCCcEEEeCHHHHH-HHHhh----hhccccccceeEEEeccccccc
Q 000114 1422 VVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRR----WKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1422 v~~ltG~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~----~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
|+....+.+.. .+..-.+||..+|-..+. +.+|- ...........+.|+||++.++
T Consensus 152 vG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 152 VGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 99988877665 445567799999987662 12221 1122344567888999998553
No 343
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.42 E-value=0.0009 Score=76.98 Aligned_cols=64 Identities=25% Similarity=0.398 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHcCCCc-EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSSADN-ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~n-vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
+||+-|.+++..++.++++ .+|+||.|+|||.+. -.+...+... +.++++++||...+.+..+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA----------GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT----------T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC----------CCeEEEECCcHHHHHHHHHh
Confidence 4799999999999877665 577899999999753 3355555442 35899999999988876655
No 344
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.36 E-value=0.0006 Score=85.53 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=62.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
++..+|.-|..|+..+++..= .||.+|+|+|||+...--++ ++.+. ..+ .+++.+|+.--++|.++.+.+
T Consensus 407 ~lpkLN~SQ~~AV~~VL~rpl-sLIQGPPGTGKTvtsa~IVy-hl~~~-~~~--~VLvcApSNiAVDqLaeKIh~----- 476 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQRPL-SLIQGPPGTGKTVTSATIVY-HLARQ-HAG--PVLVCAPSNIAVDQLAEKIHK----- 476 (935)
T ss_pred CchhhchHHHHHHHHHHcCCc-eeeecCCCCCceehhHHHHH-HHHHh-cCC--ceEEEcccchhHHHHHHHHHh-----
Confidence 578999999999999998444 89999999999988754444 44442 344 899999999999999998873
Q ss_pred CCcEEEEEc
Q 000114 1418 LGMRVVELT 1426 (2158)
Q Consensus 1418 ~g~~v~~lt 1426 (2158)
.|++|..+.
T Consensus 477 tgLKVvRl~ 485 (935)
T KOG1802|consen 477 TGLKVVRLC 485 (935)
T ss_pred cCceEeeee
Confidence 267776654
No 345
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.27 E-value=0.0014 Score=75.36 Aligned_cols=64 Identities=23% Similarity=0.327 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHhcCCCc-EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYNTDDN-VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~n-vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
+||+-|.+++..++.++++ ++|.||.|+|||.+. -.+.+.+.. .+. ++++++||...+.+..+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~--~g~--~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA--AGK--RVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH--TT----EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh--CCC--eEEEECCcHHHHHHHHHh
Confidence 4789999999999876654 667799999999754 445555555 233 899999999988875554
No 346
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.19 E-value=0.002 Score=86.67 Aligned_cols=68 Identities=31% Similarity=0.383 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
..||+.|.+|+..++...+.++|.||+|+|||.+..-.+.+.+.. +.+|++++|+..-|.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~-----------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-----------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 468999999999999887889999999999998776555555443 23799999999999999988876
No 347
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.19 E-value=0.0047 Score=81.58 Aligned_cols=126 Identities=22% Similarity=0.283 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
++.++|..-+... ++++=|-|+.-.+|-|||..-+-.| -.+..++...| --++|+|+-.|.+ +..+|.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLi-tYLmE~K~~~G-------P~LvivPlstL~N-W~~Ef~ 464 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLI-TYLMEHKQMQG-------PFLIIVPLSTLVN-WSSEFP 464 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHH-HHHHHHcccCC-------CeEEeccccccCC-chhhcc
Confidence 7888998887654 5666688999999999997654333 33444332222 2477899988754 344454
Q ss_pred hhcccCCcEEEEEeCCCccCH----hh-hccccEEEcchhHHHHHHhccCCCcccccc--ceEEeeccccccc
Q 000114 572 NRLQMYDVKVRELSGDQTLTR----QQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLV--KLLIIDEIHLLHD 637 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~----~~-~~~~~IiV~TPekld~l~r~~~~~~~l~~v--~lIIiDEaH~l~d 637 (2158)
.+.. .+..+.+.|...... +. ..+.+|++||.|.+ .+ +...++.| .++||||-|+|..
T Consensus 465 kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyi---ik---dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 465 KWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYI---IK---DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred cccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHh---cC---CHHHHhccCCcceeecccccccc
Confidence 4322 455666666433221 11 35789999999963 22 33444444 5899999999864
No 348
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.18 E-value=0.0021 Score=73.94 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHhc--CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1341 HFNPIQTQVFTVLYN--TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~--~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
..+|.|.++...+.+ ++.|.+...-.|.|||.+. +|++..... ++. .-+.+++| ++|..|.++.+.++|+...
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LA--dg~-~LvrviVp-k~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALA--DGS-RLVRVIVP-KALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHc--CCC-cEEEEEcC-HHHHHHHHHHHHHHHHHHh
Confidence 689999999999886 3578999999999999887 788776665 233 13445555 5799999999999999888
Q ss_pred CcEEEEEcCCc--chhh-----------hcccCCcEEEeCHHHHHHHHhhhhc----------------cccccceeEEE
Q 000114 1419 GMRVVELTGET--AMDL-----------KLLEKGQIIISTPEKWDALSRRWKQ----------------RKYVQQVSLFI 1469 (2158)
Q Consensus 1419 g~~v~~ltG~~--~~~~-----------~~l~~~~IIV~TPe~l~~l~r~~~~----------------~~~l~~v~llI 1469 (2158)
+.+|..+.=+. ..+. .....+.|+++|||.+.++.-.+.. ..+++....=|
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdi 177 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDI 177 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeE
Confidence 88877664322 2211 1224568999999998765422210 11344556678
Q ss_pred eccccccc
Q 000114 1470 IDELHLIG 1477 (2158)
Q Consensus 1470 iDEaH~l~ 1477 (2158)
+||+|.+.
T Consensus 178 lDEsDe~L 185 (229)
T PF12340_consen 178 LDESDEIL 185 (229)
T ss_pred eECchhcc
Confidence 99999765
No 349
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.16 E-value=0.0022 Score=77.92 Aligned_cols=154 Identities=18% Similarity=0.249 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHhcCCC----cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1341 HFNPIQTQVFTVLYNTDD----NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~----nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
.+-|+|.+-+.-+....+ --|+.-.-|-|||+.+.-.++... ... ..++++|+.+|. |+.+++. ++..
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----~ra--~tLVvaP~VAlm-QW~nEI~-~~T~ 255 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----DRA--PTLVVAPTVALM-QWKNEIE-RHTS 255 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----ccC--CeeEEccHHHHH-HHHHHHH-Hhcc
Confidence 567888887765443222 246778899999988855555322 223 689999999975 6666666 3433
Q ss_pred CCCcEEEEEcCCcc-hhhhcccCCcEEEeCHHHHHHHHhhhhc-----------cccccce--eEEEecccccccCCCCC
Q 000114 1417 GLGMRVVELTGETA-MDLKLLEKGQIIISTPEKWDALSRRWKQ-----------RKYVQQV--SLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~-~~~~~l~~~~IIV~TPe~l~~l~r~~~~-----------~~~l~~v--~llIiDEaH~l~~~~g~ 1482 (2158)
...++..++|... .+.+.+.+.+++++|...+.+..|+-.. ...+.++ .-+|+||||.+-+.+..
T Consensus 256 -gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~sn 334 (791)
T KOG1002|consen 256 -GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSN 334 (791)
T ss_pred -CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccccc
Confidence 3578888998643 4577888999999999988888776211 1234444 45999999999764433
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
+-..+.. ++ ..+-.+||.|+-
T Consensus 335 TArAV~~-L~--------tt~rw~LSGTPL 355 (791)
T KOG1002|consen 335 TARAVFA-LE--------TTYRWCLSGTPL 355 (791)
T ss_pred HHHHHHh-hH--------hhhhhhccCCcc
Confidence 3332221 11 234478888853
No 350
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.12 E-value=0.004 Score=82.21 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=64.1
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcC---CceEEEecCccccccCCC-ccEEEEecceeecCCCCcCcCCCHHHHHHhhccC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAG---KIKVCVMSSSMCWGVPLT-AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHA 1710 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g---~i~VLVaT~~la~Gvdlp-~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRa 1710 (2158)
....+.|....++|-..++.|..- -...|.+|...+.|+|+. +.+||| | +.+..+...+|+--||
T Consensus 752 kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii-----f------dsdwnp~~d~qaqdra 820 (1157)
T KOG0386|consen 752 KYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII-----F------DSDWNPHQDLQAQDRA 820 (1157)
T ss_pred heeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE-----e------cCCCCchhHHHHHHHH
Confidence 455667888899999999999854 356889999999999998 566776 3 3344567778888888
Q ss_pred CCCCCCCceEEEEEecCCh
Q 000114 1711 SRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1711 GR~g~d~~G~~iil~~~~~ 1729 (2158)
-|.|..+...++.++.-..
T Consensus 821 hrigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 821 HRIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred HHhhchhheeeeeeehhhH
Confidence 8888667777777766553
No 351
>PRK10536 hypothetical protein; Provisional
Probab=97.05 E-value=0.00097 Score=77.99 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
++...|..|...+..+.. .+.+++.||+|+|||+.+....++.+..+. --++++.=|...
T Consensus 56 ~i~p~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~~l~~~~---------~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAEALIHKD---------VDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHHHHhcCC---------eeEEEEeCCCCC
Confidence 566779999999886654 578999999999999999888887664321 125666667654
No 352
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.04 E-value=0.0024 Score=86.04 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
..+|+.|.+|+..++.+.+.++|.||+|+|||.+..-.+. .+.. .+. ++++++|+..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~-~~~~--~g~--~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIR-QLVK--RGL--RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHH-HHHH--cCC--CEEEEcCcHHHHHHHHHHHHh
Confidence 5789999999999988778899999999999977644333 3333 133 899999999999999988874
No 353
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.03 E-value=0.023 Score=72.03 Aligned_cols=81 Identities=21% Similarity=0.153 Sum_probs=63.7
Q ss_pred ecCCCCHHHHHHHHHHHhCCCce-EEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCC
Q 000114 800 HHAGMTRGDRQLVEDLFGDGHVQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (2158)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g~i~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (2158)
+.|.....+|..+...|....+- .|.+|-+.+-|||+.+.+.||-++.-|+|.- =.|.+-||-|-|...
T Consensus 1074 LDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~----------D~QAMDRAHRLGQTr 1143 (1185)
T KOG0388|consen 1074 LDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTA----------DQQAMDRAHRLGQTR 1143 (1185)
T ss_pred ecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcch----------hhHHHHHHHhccCcc
Confidence 37888889999999999886664 4789999999999999999998777777663 467777888877655
Q ss_pred ccEEEEEcCCCc
Q 000114 879 YGEGIIITGHSE 890 (2158)
Q Consensus 879 ~G~~iil~~~~~ 890 (2158)
.-.+|.+.....
T Consensus 1144 dvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1144 DVTVYRLITRGT 1155 (1185)
T ss_pred ceeeeeeccccc
Confidence 556666666544
No 354
>PF13245 AAA_19: Part of AAA domain
Probab=96.97 E-value=0.0023 Score=61.35 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=43.7
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
++..++.++.-++|.||.|||||.+..-.+...+..... .+.++++++|++..+.++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~-------~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD-------PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-------CCCeEEEECCCHHHHHHHHHHH
Confidence 455555644445669999999997776666666643111 1347999999999999988887
No 355
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.94 E-value=0.001 Score=74.43 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=78.4
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHH
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~ 1652 (2158)
..+.+|||++|.+..+.+...+.... ...++.++.. ...++..++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~---------------------------------~~~~~~v~~q--~~~~~~~~l 52 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERL---------------------------------EEKGIPVFVQ--GSKSRDELL 52 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS----------------------------------E-ETSCEEES--TCCHHHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhc---------------------------------ccccceeeec--CcchHHHHH
Confidence 35789999999998887775442110 0112233333 356788899
Q ss_pred HHHHcCCceEEEecC--ccccccCCC---ccEEEEecceeecCCC-------------------CcCcCCCHHHHHHhhc
Q 000114 1653 ALFEAGKIKVCVMSS--SMCWGVPLT---AHLVVVMGTQYYDGQE-------------------NAHTDYPVTDLLQMMG 1708 (2158)
Q Consensus 1653 ~~F~~g~i~VLVaT~--~la~Gvdlp---~~~vVI~gt~~yd~~~-------------------~~~~~~s~~~~lQr~G 1708 (2158)
+.|+.+.-.||+|+. .+..|||+| ...|||.|.++-.+.. ..+.+.-+..+.|.+|
T Consensus 53 ~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~G 132 (167)
T PF13307_consen 53 EEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIG 132 (167)
T ss_dssp HHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcC
Confidence 999999999999998 999999999 4567777877643320 1122233567789999
Q ss_pred cCCCCCCCCceEEEEEecCChHHHHHHHhh
Q 000114 1709 HASRPLLDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1709 RaGR~g~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
|+-|.. +..|.++++-..-....|.+.+.
T Consensus 133 R~iR~~-~D~g~i~llD~R~~~~~y~~~l~ 161 (167)
T PF13307_consen 133 RLIRSE-DDYGVIILLDSRFLSKRYGKYLP 161 (167)
T ss_dssp CC--ST-T-EEEEEEESGGGGGHHHHHH-T
T ss_pred cceecc-CCcEEEEEEcCccccchhhhcCc
Confidence 999976 55676666655444444554443
No 356
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.88 E-value=0.037 Score=79.20 Aligned_cols=333 Identities=18% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHh-c---CCCcEEEEccCCchhHHHHHHHHHHHHHhhcC-CCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLY-N---TDDNVLVAAPTGSGKTICSEFAILRNHQKASE-TGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~-~---~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~-~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
...+.++|.+.++-+. . ...+.+++..-|-|||+.....+......... .+ .+++++|+ +++..+.+++. +
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~--~~liv~p~-s~~~nw~~e~~-k 411 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLG--PALIVVPA-SLLSNWKREFE-K 411 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCC--CeEEEecH-HHHHHHHHHHh-h
Q ss_pred hcCCCCcEEEEEcCCc------chhhhcccC------CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1414 FGQGLGMRVVELTGET------AMDLKLLEK------GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~------~~~~~~l~~------~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|...... +....|.. ......+.. .+++++|-+.+.... .-.....-.....+|+||+|.+.+..+
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~-~~~~~l~~~~~~~~v~DEa~~ikn~~s 489 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL-VDHGGLKKIEWDRVVLDEAHRIKNDQS 489 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh-hhHHHHhhceeeeeehhhHHHHhhhhh
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCC-CC----hHHHHH-HhccCCCc----------------------------
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSL-AN----AKDLGE-WIGATSHG---------------------------- 1527 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl-~n----~~dl~~-wl~~~~~~---------------------------- 1527 (2158)
.....+. .++ ....+++|.|+ .| ...+.+ ++......
T Consensus 490 ~~~~~l~-~~~--------~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 560 (866)
T COG0553 490 SEGKALQ-FLK--------ALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEAREL 560 (866)
T ss_pred HHHHHHH-HHh--------hcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHH
Q ss_pred ----------------------eEecCCCCcccccEEEEecccccchHHHHH----------------------------
Q 000114 1528 ----------------------LFNFPPGVRPVPLEIHIQGVDITNFEARMQ---------------------------- 1557 (2158)
Q Consensus 1528 ----------------------i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~---------------------------- 1557 (2158)
+..--|.................-+.....
T Consensus 561 ~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (866)
T COG0553 561 GIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELN 640 (866)
T ss_pred HHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhH
Q ss_pred ---------------------------------------------------hcChHHHHHH-HHhHhcCC--CEEEEecC
Q 000114 1558 ---------------------------------------------------AMTKPTFTAI-VQHAKNEK--PALVFVPS 1583 (2158)
Q Consensus 1558 ---------------------------------------------------~~~k~~~~~i-~~~~~~~~--~~IVFv~s 1583 (2158)
.........+ ......+. +++||+.-
T Consensus 641 ~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~ 720 (866)
T COG0553 641 ILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQF 720 (866)
T ss_pred HHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCc
Q ss_pred hHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcC--Cce
Q 000114 1584 RKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG--KIK 1661 (2158)
Q Consensus 1584 r~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g--~i~ 1661 (2158)
......+...+ .........++|+++...|....+.|.++ ..-
T Consensus 721 t~~l~il~~~l-----------------------------------~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v 765 (866)
T COG0553 721 TPVLDLLEDYL-----------------------------------KALGIKYVRLDGSTPAKRRQELIDRFNADEEEKV 765 (866)
T ss_pred HHHHHHHHHHH-----------------------------------HhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCce
Q ss_pred EEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1662 VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1662 VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
.+++|.+.+.|+|+-...+|| +++.+..+....|.+.||.|.|..+.-.++-+......+
T Consensus 766 ~lls~kagg~glnLt~a~~vi----------~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 766 FLLSLKAGGLGLNLTGADTVI----------LFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred EEEEecccccceeecccceEE----------EeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHH
No 357
>PF13245 AAA_19: Part of AAA domain
Probab=96.86 E-value=0.0036 Score=59.98 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHHHHHHHH
Q 000114 1349 VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1349 ~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
++...+.++.-++|.||.|||||....-.+...+... ..+. ++++++|++..++++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~--~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGK--RVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCC--eEEEECCCHHHHHHHHHHH
Confidence 4443344445456699999999977755555555321 1233 8999999999999888776
No 358
>PRK10536 hypothetical protein; Provisional
Probab=96.73 E-value=0.018 Score=67.61 Aligned_cols=143 Identities=15% Similarity=0.202 Sum_probs=81.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH----------HHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA----------KERY 1407 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa----------~q~~ 1407 (2158)
++.-.|..|...+..+.+ .+.+++.||+|+|||+++....++.+.. ..-. ++++.-|..+.. .+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~--kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAEALIH-KDVD--RIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCee--EEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 356678899999988866 5689999999999999997777766644 2222 667776765422 1222
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcchhhhc--ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHH
Q 000114 1408 RDWEIKFGQGLGMRVVELTGETAMDLKL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~ltG~~~~~~~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e 1485 (2158)
.-|-.-+-..+.. +.|.... .+. ...+.|-|.... .+|. +. + +-++||+|||+.+.
T Consensus 132 ~p~~~pi~D~L~~----~~~~~~~-~~~~~~~~~~Iei~~l~----ymRG---rt-l-~~~~vIvDEaqn~~-------- 189 (262)
T PRK10536 132 APYFRPVYDVLVR----RLGASFM-QYCLRPEIGKVEIAPFA----YMRG---RT-F-ENAVVILDEAQNVT-------- 189 (262)
T ss_pred HHHHHHHHHHHHH----HhChHHH-HHHHHhccCcEEEecHH----HhcC---Cc-c-cCCEEEEechhcCC--------
Confidence 2222111111000 1111111 111 134556666533 2332 22 2 23799999999885
Q ss_pred HHHHHHHHHHhhcCCCceEEEec
Q 000114 1486 VIVSRMRYIASQVENKIRIVALS 1508 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lS 1508 (2158)
...++.+....+.+.++|++.
T Consensus 190 --~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 --AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred --HHHHHHHHhhcCCCCEEEEeC
Confidence 234444555557788887764
No 359
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.73 E-value=0.0085 Score=64.03 Aligned_cols=121 Identities=19% Similarity=0.291 Sum_probs=57.9
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEE-cccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI-APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~I-aP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
++..++|.||+|+|||.+....+-...........+.++++ +|...-....+..+...++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--------------
Confidence 34568999999999998875544433221100112244443 444332445555555455432100
Q ss_pred cccCCcEEEeCHHHHHHHH-hhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccC
Q 000114 1435 LLEKGQIIISTPEKWDALS-RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~-r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSAT 1510 (2158)
-.|+..+...+ +.+.. ....++||||+|.+. . ...+..++.+.. ..++++|+.+.+
T Consensus 69 --------~~~~~~l~~~~~~~l~~----~~~~~lviDe~~~l~--~----~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 --------RQTSDELRSLLIDALDR----RRVVLLVIDEADHLF--S----DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp --------TS-HHHHHHHHHHHHHH----CTEEEEEEETTHHHH--T----HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred --------cCCHHHHHHHHHHHHHh----cCCeEEEEeChHhcC--C----HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 11222222222 22211 223799999999974 1 335555555544 456666665543
No 360
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.70 E-value=0.004 Score=82.28 Aligned_cols=137 Identities=15% Similarity=0.223 Sum_probs=92.2
Q ss_pred CCCHHHHHHHH---HHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1341 HFNPIQTQVFT---VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1341 ~~~~iQ~q~~~---~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
.++.+|..-++ .+|+.+-|-|+.-.-|-|||+.. +.+|.|+.... .-| --+||+||-.+.+ +--+++ +++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegnWG--PHLIVVpTsviLn-WEMElK-Rwc- 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGNWG--PHLIVVPTSVILN-WEMELK-RWC- 688 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccCCC--CceEEeechhhhh-hhHHHh-hhC-
Confidence 67778876654 47888889999999999999876 66666776632 223 4588999966553 222344 444
Q ss_pred CCCcEEEEEcCCcchh---hhcccCC---cEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1417 GLGMRVVELTGETAMD---LKLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~---~~~l~~~---~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
.|+++..+.|..... .+-+.++ ||.|++...+..-.+.++. ++..++|+||+|.|-+.....|+.++
T Consensus 689 -PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkr----krWqyLvLDEaqnIKnfksqrWQAll 761 (1958)
T KOG0391|consen 689 -PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKR----KRWQYLVLDEAQNIKNFKSQRWQALL 761 (1958)
T ss_pred -CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHh----hccceeehhhhhhhcchhHHHHHHHh
Confidence 389999999865432 2333333 8888887766443333322 46789999999999876655565554
No 361
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.56 E-value=0.015 Score=69.45 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 495 QLNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
.|...|-+++--+.+. +.-.++--.||.||.-...-.|+..+.+++ .|.|+++..-.|-.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr----------~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR----------KRAVWVSVSNDLKYD 106 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC----------CceEEEECChhhhhH
Confidence 5788898887555321 234788889999998877777777777653 379999999999999
Q ss_pred HHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhcc-CCCcccc---------ccceEEeeccccc
Q 000114 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ---------LVKLLIIDEIHLL 635 (2158)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~-~~~~~l~---------~v~lIIiDEaH~l 635 (2158)
..+.|+.+... .+.+..+..- .......-...|+++|.-.+..-.+.. .....++ .=.+||+||||..
T Consensus 107 a~RDl~DIG~~-~i~v~~l~~~-~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 107 AERDLRDIGAD-NIPVHPLNKF-KYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHHHHHHhCCC-cccceechhh-ccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 99999986543 3444433321 111111124569999988763332110 1111111 1258999999988
Q ss_pred ccC-C----hhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 636 HDN-R----GPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 636 ~d~-r----g~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
... . +......+..+ ...-++.|+|.+|||-.
T Consensus 185 kn~~~~~~~~sk~g~avl~L----Q~~LP~ARvvY~SATga 221 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLEL----QNRLPNARVVYASATGA 221 (303)
T ss_pred CCCCccCccccHHHHHHHHH----HHhCCCCcEEEeccccc
Confidence 652 2 12222222222 22346789999999943
No 362
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.54 E-value=0.079 Score=72.65 Aligned_cols=52 Identities=27% Similarity=0.328 Sum_probs=46.0
Q ss_pred ccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchhHHHHHHHHhc
Q 000114 1144 LRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQ 1195 (2158)
Q Consensus 1144 l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 1195 (2158)
|+.||||++..+++|-.+==+++++..++.+||.+++|.++.|+.|+++++.
T Consensus 759 L~~lPgI~~~~a~~ll~~f~si~~l~~as~eeL~~~iG~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 759 LLKLPGVTKKNYRNLRKKVKSIRELAKLSQNELNELIGDEEAAKRLYDFLRT 810 (814)
T ss_pred HHHCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhCCHHHHHHHHHHhcc
Confidence 7799999999999987763378888899999999999988999999999885
No 363
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.53 E-value=0.005 Score=69.02 Aligned_cols=127 Identities=19% Similarity=0.286 Sum_probs=76.2
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
++.+|||++|....+.+...+...... .++.++.. ...++..+
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----------------------------------~~~~v~~q--~~~~~~~~ 51 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEE-----------------------------------KGIPVFVQ--GSKSRDEL 51 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E------------------------------------ETSCEEES--TCCHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhccc-----------------------------------ccceeeec--CcchHHHH
Confidence 589999999999888887766543211 01112222 35578889
Q ss_pred HHHHhCCCceEEEech--hhhhccCCCc--eEEEEecccccCCCCC----------------cc----ccCCHHHHHHhh
Q 000114 813 EDLFGDGHVQVLVSTA--TLAWGVNLPA--HTVIIKGTQIYNPEKG----------------AW----TELSPLDIMQML 868 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~--tla~GVdlP~--v~vVI~~~~~yd~~~g----------------~~----~~~s~~~~~Qr~ 868 (2158)
.+.|+++.-.||+|+. .++.|||+|+ .+.||-...||-++.. .+ .+-....+.|.+
T Consensus 52 l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~ 131 (167)
T PF13307_consen 52 LEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAI 131 (167)
T ss_dssp HHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhc
Confidence 9999999999999999 9999999996 4556666677754431 01 112335678999
Q ss_pred cccCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 869 GRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
||+-|... ..|..+++-..-....|.+.
T Consensus 132 GR~iR~~~-D~g~i~llD~R~~~~~y~~~ 159 (167)
T PF13307_consen 132 GRLIRSED-DYGVIILLDSRFLSKRYGKY 159 (167)
T ss_dssp HCC--STT--EEEEEEESGGGGGHHHHHH
T ss_pred CcceeccC-CcEEEEEEcCccccchhhhc
Confidence 99999654 46666665544333444443
No 364
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.52 E-value=0.024 Score=75.49 Aligned_cols=153 Identities=14% Similarity=0.184 Sum_probs=83.7
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC-CCceEEEEEcccHHHHHHHHHH
Q 000114 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-TGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1331 ~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~-~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
.+..+|.... -...|+.|+..++.+ .-++|.|+.|+|||.+.. .++..+....+ .+..++++.+||---+....+.
T Consensus 136 ~l~~~~~~~~-~~~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~ 212 (586)
T TIGR01447 136 ILENLFPLLN-EQNWQKVAVALALKS-NFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAES 212 (586)
T ss_pred HHHHhhcccc-ccHHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHH
Confidence 3445554221 237999999999874 559999999999997652 23333322111 1124799999998888777666
Q ss_pred HHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhh---hh-ccccccceeEEEecccccccCCCCChHH
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---WK-QRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~---~~-~~~~l~~v~llIiDEaH~l~~~~g~~~e 1485 (2158)
....+... +.. . + ......+-..|-.++...... +. .......+++|||||+=++..
T Consensus 213 ~~~~~~~l-~~~-----~----~--~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~------- 273 (586)
T TIGR01447 213 LRKAVKNL-AAA-----E----A--LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL------- 273 (586)
T ss_pred HHhhhccc-ccc-----h----h--hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH-------
Confidence 65433211 100 0 0 000001123333333221110 00 112234689999999998851
Q ss_pred HHHHHHHHHHhhcCCCceEEEec
Q 000114 1486 VIVSRMRYIASQVENKIRIVALS 1508 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lS 1508 (2158)
..|..+.+.++...|+|++.
T Consensus 274 ---~l~~~ll~al~~~~rlIlvG 293 (586)
T TIGR01447 274 ---PLMAKLLKALPPNTKLILLG 293 (586)
T ss_pred ---HHHHHHHHhcCCCCEEEEEC
Confidence 12333334456788998876
No 365
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.49 E-value=0.022 Score=76.00 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=84.7
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+..+|..-....++|+.|+...+.+ .-++|.|++|+|||.+. ..++..+.+.......++++.+||.--+....+...
T Consensus 143 l~~lf~~~~~~~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~v-~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 143 LDALFGPVTDEVDWQKVAAAVALTR-RISVISGGPGTGKTTTV-AKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred HHHhcCcCCCCCHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHH-HHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 4445541112358999999888774 45999999999999775 223333322111222378889999988887777665
Q ss_pred HHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhh---h-hccccccceeEEEecccccccCCCCChHHHH
Q 000114 1412 IKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---W-KQRKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~---~-~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~ 1487 (2158)
...... +. .. ..+ ..-..-..|-.++...... + ....+.-..+++||||+-++.
T Consensus 221 ~~~~~~-~~-----~~----~~~--~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd---------- 278 (615)
T PRK10875 221 KALRQL-PL-----TD----EQK--KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD---------- 278 (615)
T ss_pred hhhhcc-cc-----ch----hhh--hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----------
Confidence 433221 11 00 000 0001112333333221110 0 011123456899999999884
Q ss_pred HHHHHHHHhhcCCCceEEEecc
Q 000114 1488 VSRMRYIASQVENKIRIVALST 1509 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSA 1509 (2158)
+..|..+...++...|+|++.-
T Consensus 279 ~~lm~~ll~al~~~~rlIlvGD 300 (615)
T PRK10875 279 LPMMARLIDALPPHARVIFLGD 300 (615)
T ss_pred HHHHHHHHHhcccCCEEEEecc
Confidence 2233334445577899998863
No 366
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.47 E-value=0.0052 Score=77.66 Aligned_cols=95 Identities=16% Similarity=0.257 Sum_probs=60.3
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccC
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~ 1438 (2158)
.++|.|..|||||+++. .++..+.....+. +++|+++..+|.......+.+.... ..
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~~~~~~--~~~~l~~n~~l~~~l~~~l~~~~~~--------------------~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQNSEEGK--KVLYLCGNHPLRNKLREQLAKKYNP--------------------KL 59 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhccccCC--ceEEEEecchHHHHHHHHHhhhccc--------------------ch
Confidence 47899999999999984 4444442212334 8899999999999888877643300 01
Q ss_pred CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
....+..|..+..-.. .........++|||||||.+..
T Consensus 60 ~~~~~~~~~~~i~~~~--~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYS--ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhHHHHhhcc--cccccCCcCCEEEEehhHhhhh
Confidence 1223333333322111 1223467899999999999976
No 367
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.34 E-value=0.05 Score=68.60 Aligned_cols=301 Identities=18% Similarity=0.208 Sum_probs=140.6
Q ss_pred EEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhccc-CCcEEEEEeCCCc-----
Q 000114 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM-YDVKVRELSGDQT----- 589 (2158)
Q Consensus 516 v~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~-~gi~v~~l~Gd~~----- 589 (2158)
..+.||||||++..-.||....++- ..-++.|..-..+......|..-... +=..-.+..+|..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy----------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikk 71 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY----------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKK 71 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch----------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeee
Confidence 3578999999998888888876643 24677777777666665555432210 0000011111211
Q ss_pred ---cCHhhhccccEEEcchhHH-HHHHhccCC---CccccccceE-EeecccccccC----------ChhhHHHHHHHHH
Q 000114 590 ---LTRQQIEETQIIVTTPEKW-DIITRKSGD---RTYTQLVKLL-IIDEIHLLHDN----------RGPVLESIVARTV 651 (2158)
Q Consensus 590 ---~~~~~~~~~~IiV~TPekl-d~l~r~~~~---~~~l~~v~lI-IiDEaH~l~d~----------rg~~le~iv~r~~ 651 (2158)
.+. -.....|.++|.+.+ ..++|.... ...+.+.++| +-||+|++... --..+++.+....
T Consensus 72 vn~fse-hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~ 150 (812)
T COG3421 72 VNNFSE-HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL 150 (812)
T ss_pred ecccCc-cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH
Confidence 111 123567999999997 333333211 2334555554 56999999541 1122444333221
Q ss_pred HHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec-CCcccccceeEEEeeccC-Ch-hHHHHHhhHHHHHHHH
Q 000114 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-NSYRPVPLSQQYIGIQVK-KP-LQRFQLMNDLCYEKVV 728 (2158)
Q Consensus 652 ~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~-~~~rpv~l~~~~~~~~~~-~~-~~~~~~l~~~~~~~i~ 728 (2158)
+ ..++--++.+|||+|...+|..-.... .++.+. ..|+.......+..+... .. .+.+.++....|...+
T Consensus 151 ---~-~nkd~~~lef~at~~k~k~v~~ky~dk---iv~~y~lk~f~e~gytk~i~~~s~~~nl~tr~l~alv~s~yr~~l 223 (812)
T COG3421 151 ---E-QNKDNLLLEFSATIPKEKSVEDKYEDK---IVVTYTLKQFSEDGYTKNIYSLSYNKNLETRFLGALVSSLYRELL 223 (812)
T ss_pred ---h-cCCCceeehhhhcCCccccHHHHhccc---eEEeeeHHHhhhhcchhhhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 2 234445677899998544554433211 111110 111111111111111111 11 1122233333344433
Q ss_pred H-Hh--CCCeEEEEecCh-HHHHHHHHHHHHHh--hcccccccccccCchhHHHHHhhhh-----ccCcchhhhhccCCe
Q 000114 729 A-VA--GKHQVLIFVHSR-KETAKTARAIRDTA--LENDTLGRFLKEDSVSREILQSHTD-----MVKSNDLKDLLPYGF 797 (2158)
Q Consensus 729 ~-~~--~~~~vLVFv~sr-~~~~~~a~~L~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~l~~ll~~gv 797 (2158)
. +. .-+|||.|-+-| .+...-+..+.... .+.+.+..+. ..+..++.+... .-..+.|.-++...+
T Consensus 224 a~~~~i~fkpvilfks~~i~eska~y~~f~~~~enl~~dd~enl~---~~s~~~~n~a~~~f~~k~n~~~~l~~~~~nkf 300 (812)
T COG3421 224 AQHHNIEFKPVILFKSERIEESKANYERFNAFLENLSFDDLENLF---NHSRNAFNKAAKSFFDKQNHTPNLVALLQNKF 300 (812)
T ss_pred HHhcCcccceeEEeecchhhhhHhhHHHHHHHHhhcchhhhHHHH---hhhhHhHHHHHHHhhccccchHHHHHHHhcch
Confidence 2 22 257999997643 44444444443321 1222222211 122223332221 222344555544433
Q ss_pred EE----ecCC-CCHHHHHHHHHHH--hCCCceEEEechhhhhccCCC
Q 000114 798 AI----HHAG-MTRGDRQLVEDLF--GDGHVQVLVSTATLAWGVNLP 837 (2158)
Q Consensus 798 ~~----hHag-l~~~~R~~v~~~F--~~g~i~VLVaT~tla~GVdlP 837 (2158)
.. ..+. -..++-...+..+ ++.-++++.+.+.|-.|.|+-
T Consensus 301 ~~~~~i~n~~ek~~~e~~lllnsled~dnpir~if~vd~lnegwdvl 347 (812)
T COG3421 301 KESVQINNNNEKELEESMLLLNSLEDRDNPIRVIFSVDKLNEGWDVL 347 (812)
T ss_pred hhhheecCCCccchHHHHHHHhhhhhcCCCeEEEEEeecccccchhh
Confidence 22 2221 1122223333333 467899999999999999853
No 368
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.30 E-value=0.033 Score=74.27 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
++|+.|+..++.+ .-++|+|+.|+|||.+..-.+ ..+...... ....++++.+||---|..+.+......
T Consensus 148 ~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~~ll-~~l~~~~~~-----~~~~~I~l~APTGkAA~rL~e~~~~~~ 217 (586)
T TIGR01447 148 NWQKVAVALALKS-NFSLITGGPGTGKTTTVARLL-LALVKQSPK-----QGKLRIALAAPTGKAAARLAESLRKAV 217 (586)
T ss_pred HHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHHHHH-HHHHHhccc-----cCCCcEEEECCcHHHHHHHHHHHHhhh
Confidence 7999999998886 558999999999998653222 222221100 012479999999888887777665543
No 369
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.29 E-value=0.05 Score=65.09 Aligned_cols=161 Identities=20% Similarity=0.214 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHhc---------CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~---------~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
.+...|-+++--..+ .+.-.++.--||.||.-...-.|+..+.+. .. |+|+++.+..|-.+..++|+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--r~--r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--RK--RAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--CC--ceEEEECChhhhhHHHHHHH
Confidence 566777666544322 134588999999999977766777777772 22 79999999999999999999
Q ss_pred HHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhh---hccc-----cc--cceeEEEecccccccCCCC
Q 000114 1412 IKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW---KQRK-----YV--QQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~---~~~~-----~l--~~v~llIiDEaH~l~~~~g 1481 (2158)
.++.. .+.+..+..-...+...+ +..|+++|...+..-.+.. ..+. ++ ..=.+||+||||...+..+
T Consensus 113 -DIG~~-~i~v~~l~~~~~~~~~~~-~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 113 -DIGAD-NIPVHPLNKFKYGDIIRL-KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred -HhCCC-cccceechhhccCcCCCC-CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 45432 333333322100011111 3369999988876654310 1110 11 1235899999998865322
Q ss_pred -----ChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1482 -----PVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1482 -----~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
......+..+ ..++ ++.|+|-+|||-.
T Consensus 190 ~~~~~sk~g~avl~L---Q~~L-P~ARvvY~SATga 221 (303)
T PF13872_consen 190 GSKKPSKTGIAVLEL---QNRL-PNARVVYASATGA 221 (303)
T ss_pred cCccccHHHHHHHHH---HHhC-CCCcEEEeccccc
Confidence 1222233333 2333 4788999999964
No 370
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.26 E-value=0.0098 Score=75.16 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=59.5
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2158)
.++|.|..|||||++++-.+....... .+.+++|+++..+|+..+...+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~---------~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSE---------EGKKVLYLCGNHPLRNKLREQLAKKYNP---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccc---------cCCceEEEEecchHHHHHHHHHhhhccc----------------
Confidence 478999999999998865544431111 2347999999999999888888764300
Q ss_pred hhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc
Q 000114 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 593 ~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
......+..|..+ +.............++|||||||++.+
T Consensus 58 ---~~~~~~~~~~~~~--i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSF--INNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---chhhhhhhhhHHH--HhhcccccccCCcCCEEEEehhHhhhh
Confidence 0112223333332 111001113446689999999999976
No 371
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.19 E-value=0.044 Score=73.25 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc
Q 000114 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~ 575 (2158)
..++|+.|+..++.+ .-++|.|+.|+|||.+..-. +..+..... ....++++.+||---|..+.+.......
T Consensus 153 ~~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~v~~l-l~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~~~~ 224 (615)
T PRK10875 153 EVDWQKVAAAVALTR-RISVISGGPGTGKTTTVAKL-LAALIQLAD------GERCRIRLAAPTGKAAARLTESLGKALR 224 (615)
T ss_pred CCHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHH-HHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHhhhh
Confidence 458999999988875 45899999999999764322 222222100 0234788999999888888877765443
Q ss_pred cCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccC----CCccccccceEEeecccccccCChhhHHHHHHHHH
Q 000114 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSG----DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2158)
Q Consensus 576 ~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~----~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~ 651 (2158)
.+++. .........-..|-.++-....... .....-..++|||||+-++. -+ ++.+++
T Consensus 225 ~~~~~-----------~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd---~~----lm~~ll 286 (615)
T PRK10875 225 QLPLT-----------DEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD---LP----MMARLI 286 (615)
T ss_pred ccccc-----------hhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc---HH----HHHHHH
Confidence 32210 1100111112334444311110000 01122346899999999873 11 222232
Q ss_pred HHHhhccccccEEEEcc
Q 000114 652 RQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 652 ~~~~~~~~~~riv~lSA 668 (2158)
...++..|+|++-=
T Consensus 287 ---~al~~~~rlIlvGD 300 (615)
T PRK10875 287 ---DALPPHARVIFLGD 300 (615)
T ss_pred ---HhcccCCEEEEecc
Confidence 23466788888753
No 372
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.18 E-value=0.0083 Score=74.53 Aligned_cols=124 Identities=22% Similarity=0.210 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc
Q 000114 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~ 575 (2158)
||+-|.+++.. ...+++|.|+.|||||.+.+.-++..+..+.. +.-+++++++|++.+.++..++...+.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~-------~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV-------PPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS-------TGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccccC-------ChHHheecccCHHHHHHHHHHHHHhcC
Confidence 58899999886 45679999999999999988888777766521 334799999999999999999998765
Q ss_pred cCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 576 ~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
..+... ..+............+.|+|-..+ ..+.+....... -.-.+-|+|+..
T Consensus 71 ~~~~~~---~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~-~~~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQQES---SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG-IDPNFEILDEEE 125 (315)
T ss_dssp HCCHCC---TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT-SHTTTEEECHHH
T ss_pred cccccc---cccccccccccccchheeehhhhhhhhhhhhhhhhhh-ccccceeecchh
Confidence 321000 000001111122456788888776 333333211111 112456666665
No 373
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.00 E-value=0.028 Score=67.44 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHhcCC-CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~-~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
|+.--|-.|+-|+..++..+ +=|.+.++.|||||+.|+.|.+........-. ++|+.=|+..+-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~--KiiVtRp~vpvG 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYR--KIIVTRPTVPVG 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhc--eEEEecCCcCcc
Confidence 47778889999999998744 34678899999999999888887766533334 778877775543
No 374
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.99 E-value=0.035 Score=76.24 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
..+++-|.+|+..+.. +..++|.++.|+|||.+. -+++..+... ++..+++.++||-.-+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~-~~~~iitGgpGTGKTt~l-~~i~~~~~~~--~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ-HKVVILTGGPGTGKTTIT-RAIIELAEEL--GGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred CCCCHHHHHHHHHHHh-CCeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCceEEEEeCchHHHHH
Confidence 4699999999999976 456999999999999766 4555555542 211278889999877753
No 375
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.89 E-value=0.056 Score=75.36 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
.|++-|.+++..++.+++.++|.++.|+|||.+ +-++...+.. .+.+++.++||---+..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----------cCCeEEEecCcHHHHHHH
Confidence 699999999999998777789999999999986 3344444433 245799999997655443
No 376
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.88 E-value=0.023 Score=74.51 Aligned_cols=196 Identities=17% Similarity=0.236 Sum_probs=101.4
Q ss_pred CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhh
Q 000114 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2158)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 898 (2158)
...+.|++-.+|-.|.|=|+|=.|.+ ..+.+ |...=+|-+||+-|---+..|.-+.= .-+...++.++
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIck----L~~S~------SeiSK~QeVGRGLRLaVNe~G~RV~~--~~~~~n~L~vl 549 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICK----LRSSG------SEISKLQEVGRGLRLAVNENGERVTK--DFDFPNELTVL 549 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEE----ecCCC------cchHHHHHhccceeeeeccccceecc--cccccceEEEE
Confidence 56899999999999999999999887 44443 67788999999999665555554431 11111111111
Q ss_pred cCCCcccchhhHhhHHHHHHHHHhcc--ccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHH
Q 000114 899 NQQLPIESQFVSKLADQLNAEIVLGT--VQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA 976 (2158)
Q Consensus 899 ~~~~pieS~l~~~l~d~lnaeI~~~~--i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~ 976 (2158)
-.. -|-.|...|..-++.+-..+- .....++... ..+ .++.+.++ .+...-.
T Consensus 550 v~~--sek~Fv~~LqkEI~~~s~i~~~~~~~~e~~~~~----------i~~-e~~~v~~e-------------~~~~~~f 603 (985)
T COG3587 550 VNE--SEKDFVKALQKEINDESFIKQGFAKDEEELSKL----------ILK-ERGKVLPE-------------TLEKLLF 603 (985)
T ss_pred ecc--cHHHHHHHHHHHHHHhhhhccchhhHHHHHHHH----------Hhh-ccccccHH-------------HHHHHHh
Confidence 111 144555566665655433222 2222222221 111 11122221 0011112
Q ss_pred HHHhHCCCccccccCCc-cccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCC--CCcCChhHHHHHH
Q 000114 977 TILDRNNLVKYDRKSGY-FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFK--YVTVRQDEKMELA 1053 (2158)
Q Consensus 977 ~~L~~~~~i~~~~~~~~-~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~--~i~~r~~e~~~l~ 1053 (2158)
..|.+...+..++ +.. =.-+.++..-+.+|-.+..+.-+.+. .+. .-..+..+.+=+ .|.+|.+-.+|++
T Consensus 604 ~dl~~~d~l~~n~-n~f~~~~~~~d~lk~e~~~~f~~~~~~~~~---~l~---~~~~I~Na~~~k~~~i~~r~~n~kefk 676 (985)
T COG3587 604 GDLIKDDYLDLNE-NEFAEKEPELDKLKDELYEAFEKIKDLIKD---RLI---GADRIRNAKERKKEKIKIRKENFKEFK 676 (985)
T ss_pred hhhcccccccccc-hhhccccchhhhcCHHHHHHhHHHHHHHHh---hhh---hhhhhccCCcccccceehhhhhHHHHH
Confidence 2333333222211 111 12245777777777776666555442 111 112445566654 4667777788888
Q ss_pred HHhhcC
Q 000114 1054 KLLDRV 1059 (2158)
Q Consensus 1054 ~l~~~~ 1059 (2158)
.|.+.+
T Consensus 677 ~LW~~i 682 (985)
T COG3587 677 ALWEKI 682 (985)
T ss_pred HHHHHh
Confidence 887753
No 377
>PRK06526 transposase; Provisional
Probab=95.88 E-value=0.058 Score=64.58 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.1
Q ss_pred hcCCCcEEEEccCCchhHHHHHH
Q 000114 1354 YNTDDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1354 ~~~~~nvli~ApTGSGKTl~a~l 1376 (2158)
...+.|++++||+|+|||..+.-
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHH
Confidence 45678999999999999988743
No 378
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.87 E-value=0.06 Score=74.20 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
..|++-|.+|+..++.++..++|.++.|+|||.+.- ++...+.. .+.++++++||--.+..+
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~----------~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA----------AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh----------CCCeEEEEeCcHHHHHHH
Confidence 368999999999998876778999999999997643 33333332 235799999997665544
No 379
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.83 E-value=0.044 Score=63.29 Aligned_cols=145 Identities=21% Similarity=0.284 Sum_probs=92.4
Q ss_pred CCChhhHhhcCCCCCCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAFKGMTQLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
+-|+|+.=-+.+---+++.|.++....... +.|.+...-.|.|||.|. +|++..+.... ..-+.+++|
T Consensus 9 ~~P~wLl~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg---------~~LvrviVp 78 (229)
T PF12340_consen 9 EYPDWLLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADG---------SRLVRVIVP 78 (229)
T ss_pred hChHHHHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCC---------CcEEEEEcC
Confidence 457776644433347899999999988863 468999999999999875 57766655431 124555666
Q ss_pred cHHHHHHHHHHHHhhcccC-CcEE--EEEeCCCccCHhh-----------hccccEEEcchhHHHHHHhccC--------
Q 000114 559 MKALVAEVVGNLSNRLQMY-DVKV--RELSGDQTLTRQQ-----------IEETQIIVTTPEKWDIITRKSG-------- 616 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~-gi~v--~~l~Gd~~~~~~~-----------~~~~~IiV~TPekld~l~r~~~-------- 616 (2158)
++|..|..+.+..+++.. +-+| .-+.-+...+... ....-|+++|||.+.++.-+..
T Consensus 79 -k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~ 157 (229)
T PF12340_consen 79 -KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKP 157 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCH
Confidence 689999999999888642 2233 2333444443321 2355699999998633321110
Q ss_pred --------CCccccccceEEeecccccc
Q 000114 617 --------DRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 617 --------~~~~l~~v~lIIiDEaH~l~ 636 (2158)
-..++.....=|+||+|.+.
T Consensus 158 ~~~~~l~~~q~~l~~~~rdilDEsDe~L 185 (229)
T PF12340_consen 158 EEARELLKIQKWLDEHSRDILDESDEIL 185 (229)
T ss_pred HHHHHHHHHHHHHHhcCCeEeECchhcc
Confidence 01233444556888888653
No 380
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.76 E-value=0.12 Score=65.47 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=75.0
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
...++++||||+|||.++.--+.+..... ..+..+..+.+=+.|.-+.++...|.+. +|+.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~----lgvpv~~----------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI----MGIPVKA----------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhc----CCcceEe-----------
Confidence 34689999999999987643332222111 1233334455566777777766665533 3444321
Q ss_pred ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCC-ceEEEeccCCCCh
Q 000114 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENK-IRIVALSTSLANA 1514 (2158)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~-~riV~lSATl~n~ 1514 (2158)
+.++..+...+.+ +++.++||||++.+... ... -+.++..+......+ -.++.+|||.. .
T Consensus 239 -------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~----~~~-~l~el~~~l~~~~~~~e~~LVlsat~~-~ 299 (388)
T PRK12723 239 -------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPK----DFM-KLAEMKELLNACGRDAEFHLAVSSTTK-T 299 (388)
T ss_pred -------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCcc----CHH-HHHHHHHHHHhcCCCCeEEEEEcCCCC-H
Confidence 2234444433333 35789999999997642 111 355666665544433 47789999975 5
Q ss_pred HHHHHHh
Q 000114 1515 KDLGEWI 1521 (2158)
Q Consensus 1515 ~dl~~wl 1521 (2158)
.++.+.+
T Consensus 300 ~~~~~~~ 306 (388)
T PRK12723 300 SDVKEIF 306 (388)
T ss_pred HHHHHHH
Confidence 5555444
No 381
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.74 E-value=0.063 Score=74.05 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
..|++-|.+|+..++.++.-++|.++.|+|||.+. -++...+.. .+. ++++++||---+..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--~g~--~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--AGY--RVIGAALSGKAAEG 411 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--CCC--eEEEEeCcHHHHHH
Confidence 36899999999999887677899999999999765 344444444 233 89999999765544
No 382
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.71 E-value=0.084 Score=63.61 Aligned_cols=64 Identities=25% Similarity=0.269 Sum_probs=49.6
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa 563 (2158)
|+...|..|.-|+...+..+ +-|.+.++-|+|||+.|+.+.+......+ ...|+|+.=|+..+-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--------~y~KiiVtRp~vpvG 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--------RYRKIIVTRPTVPVG 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--------hhceEEEecCCcCcc
Confidence 78888999999999877654 33678899999999999998887766543 223788888887653
No 383
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.70 E-value=0.04 Score=59.47 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEccc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ 1399 (2158)
..++++.||+|+|||..+.. +.+.+.. ... .++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~-i~~~~~~--~~~--~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA-IANELFR--PGA--PFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHhhc--CCC--CeEEEehh
Confidence 56799999999999976633 3333322 122 55665544
No 384
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.69 E-value=0.043 Score=72.42 Aligned_cols=79 Identities=25% Similarity=0.238 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHHHHHHhcc---C-------C-----------CCCC----
Q 000114 495 QLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNR---N-------D-----------DGSF---- 546 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il~~l~~~~---~-------~-----------~~~~---- 546 (2158)
+|++.|...+..++. ...|.++-.|||+|||++.+-..|.-..... . . +|..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 678999888776654 4557899999999999876554443222111 0 0 0000
Q ss_pred ------CCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 547 ------NHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 547 ------~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
...-+++.|-.-|-+-..|+++++++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 013678999999998889999998874
No 385
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.67 E-value=0.018 Score=71.49 Aligned_cols=71 Identities=21% Similarity=0.134 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
+|+-|.+++.. ...+++|.|+.|||||.+...-+...+.... ...-+++++++|++.+.++..++...++.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 57889999987 3667999999999999988777776666531 12228999999999999999999876653
No 386
>PRK08181 transposase; Validated
Probab=95.62 E-value=0.07 Score=64.25 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHH---HhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1340 KHFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~---l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
..+++.|..++.. +...+.|++++||+|+|||..+. ++...+.. .+. +++|+ +..+|+.+.
T Consensus 86 ~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~--~g~--~v~f~-~~~~L~~~l 149 (269)
T PRK08181 86 PMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIE--NGW--RVLFT-RTTDLVQKL 149 (269)
T ss_pred CCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHH--cCC--ceeee-eHHHHHHHH
Confidence 3456777777643 34567899999999999997763 44444433 122 45554 455565554
No 387
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.60 E-value=0.023 Score=72.25 Aligned_cols=67 Identities=27% Similarity=0.399 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+.+++-|.+|+..+.+..+-.++.||.|+|||.+....|.+.+.++ .+||+.+|+..-+.-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-----------k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-----------KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC-----------CeEEEEcCchHHHHHHHHHhc
Confidence 4789999999999998877789999999999999888888887764 389999999999998888654
No 388
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.59 E-value=0.024 Score=60.60 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQQ 535 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~ 535 (2158)
++..++|+||+|+|||.++...+-..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34568999999999998776554443
No 389
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.56 E-value=0.092 Score=73.31 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
..|++-|.+++..++.+++.++|.++.|+|||.+. -++...+.. .+. +++.++||---+.... ...|
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~--~G~--~V~~~ApTGkAA~~L~--------e~tG 411 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEA--AGY--EVRGAALSGIAAENLE--------GGSG 411 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCC--eEEEecCcHHHHHHHh--------hccC
Confidence 36999999999999987777899999999999763 344445544 233 8999999976553322 1112
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhh-ccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhc
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~-~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~ 1498 (2158)
+.. .|-.+| +..|. ....+...++|||||+-+++.. .+..++. .. .
T Consensus 412 i~a---------------------~TI~sl---l~~~~~~~~~l~~~~vlIVDEASMv~~~---~m~~LL~----~a--~ 458 (988)
T PRK13889 412 IAS---------------------RTIASL---EHGWGQGRDLLTSRDVLVIDEAGMVGTR---QLERVLS----HA--A 458 (988)
T ss_pred cch---------------------hhHHHH---HhhhcccccccccCcEEEEECcccCCHH---HHHHHHH----hh--h
Confidence 211 122222 22232 2334667789999999998632 1222221 11 1
Q ss_pred CCCceEEEeccC
Q 000114 1499 ENKIRIVALSTS 1510 (2158)
Q Consensus 1499 ~~~~riV~lSAT 1510 (2158)
....++|++.=+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 346788887643
No 390
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.56 E-value=0.044 Score=59.39 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=62.1
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCC-ceEEEecCccccccCCCc---cEEEEecceeecCCC----------------Cc
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGK-IKVCVMSSSMCWGVPLTA---HLVVVMGTQYYDGQE----------------NA 1694 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~-i~VLVaT~~la~Gvdlp~---~~vVI~gt~~yd~~~----------------~~ 1694 (2158)
+..++..+....+...+++.|+... ..||++|..+..|||+|. ..|||.|.++-.+.. +.
T Consensus 23 ~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~ 102 (141)
T smart00492 23 NLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRP 102 (141)
T ss_pred CCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCc
Confidence 4456666777767888999998654 379999988999999995 467777776643321 00
Q ss_pred Cc----CCCHHHHHHhhccCCCCCCCCceEEEEE
Q 000114 1695 HT----DYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2158)
Q Consensus 1695 ~~----~~s~~~~lQr~GRaGR~g~d~~G~~iil 1724 (2158)
+. +.....+.|.+||+-|.. +..|.++++
T Consensus 103 ~~~~~~~~a~~~l~Qa~GR~iR~~-~D~g~i~l~ 135 (141)
T smart00492 103 FDFVSLPDAMRTLAQCVGRLIRGA-NDYGVVVIA 135 (141)
T ss_pred hhHHHHHHHHHHHHHHhCccccCc-CceEEEEEE
Confidence 11 222567889999999976 456755554
No 391
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.55 E-value=0.02 Score=72.70 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+.+++-|++|+....+..+-.+|.||+|+|||.....-|.+.+.+ +. ++++.+|+.+-++-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k--~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KK--RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CC--eEEEEcCchHHHHHHHHHhc
Confidence 579999999999999877778999999999998887777777766 45 99999999999998888643
No 392
>PRK12377 putative replication protein; Provisional
Probab=95.50 E-value=0.077 Score=63.11 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=30.5
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
..++++.||+|+|||..+ .++.+.+.. .+ ..++..+..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~---~g--~~v~~i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLA---KG--RSVIVVTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH---cC--CCeEEEEHHHHHHHHHH
Confidence 467999999999999877 555556554 22 23344455666665544
No 393
>PRK12377 putative replication protein; Provisional
Probab=95.41 E-value=0.094 Score=62.38 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=30.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
..+++++||+|+|||-.+. +|.+.+... +..++| .+..+|..++...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~~~----------g~~v~~-i~~~~l~~~l~~~~ 148 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLLAK----------GRSVIV-VTVPDVMSRLHESY 148 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHc----------CCCeEE-EEHHHHHHHHHHHH
Confidence 4579999999999997764 344444332 123444 45566776665443
No 394
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.40 E-value=0.17 Score=59.50 Aligned_cols=124 Identities=18% Similarity=0.249 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHhcCCC----cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1342 FNPIQTQVFTVLYNTDD----NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~~~~----nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
.|..=..+...+.++.+ .++|.||+|+|||-. +.++.+.+.+..++. +++|+... +........++.
T Consensus 15 ~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~--~v~y~~~~-~f~~~~~~~~~~----- 85 (219)
T PF00308_consen 15 SNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQHPGK--RVVYLSAE-EFIREFADALRD----- 85 (219)
T ss_dssp TTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS---EEEEEHH-HHHHHHHHHHHT-----
T ss_pred cHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhccccc--cceeecHH-HHHHHHHHHHHc-----
Confidence 34444455555554333 489999999999985 366666666533444 78887643 444433332220
Q ss_pred CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhh
Q 000114 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~ 1497 (2158)
...+ .+.. .+...++++||++|.+.+.. ..-+.+...+..+..
T Consensus 86 --------------------------~~~~---~~~~------~~~~~DlL~iDDi~~l~~~~-~~q~~lf~l~n~~~~- 128 (219)
T PF00308_consen 86 --------------------------GEIE---EFKD------RLRSADLLIIDDIQFLAGKQ-RTQEELFHLFNRLIE- 128 (219)
T ss_dssp --------------------------TSHH---HHHH------HHCTSSEEEEETGGGGTTHH-HHHHHHHHHHHHHHH-
T ss_pred --------------------------ccch---hhhh------hhhcCCEEEEecchhhcCch-HHHHHHHHHHHHHHh-
Confidence 0111 1212 24578999999999987532 123445555554443
Q ss_pred cCCCceEEEeccCCCC
Q 000114 1498 VENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~n 1513 (2158)
.+.++|+.|...|.
T Consensus 129 --~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 129 --SGKQLILTSDRPPS 142 (219)
T ss_dssp --TTSEEEEEESS-TT
T ss_pred --hCCeEEEEeCCCCc
Confidence 35677777766554
No 395
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.38 E-value=0.049 Score=58.76 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLT 531 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~ 531 (2158)
...+++.||+|+|||..+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 557999999999999755433
No 396
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.34 E-value=0.093 Score=72.13 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
..+++-|.+|+..+..+ ..+++.++.|+|||.+. -.++..+.... ....++.++||-.-|..+.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt~l-~~i~~~~~~~~--------~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQH-KVVILTGGPGTGKTTIT-RAIIELAEELG--------GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCHHHHHHHHHHHhC-CeEEEECCCCCCHHHHH-HHHHHHHHHcC--------CCceEEEEeCchHHHHHHH
Confidence 36899999999998654 46999999999999765 34444443321 1146888999987776443
No 397
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.19 E-value=0.068 Score=67.79 Aligned_cols=124 Identities=26% Similarity=0.377 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHh-----cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH--HHHHHHH
Q 000114 1341 HFNPIQTQVFTVLY-----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER--YRDWEIK 1413 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~-----~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~--~~~~~~~ 1413 (2158)
.+|+-|.+++..++ ..+.+++|.||-|+|||.+. -++...+.. .+. .+++++||-.-|..+ -..+.+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~--~~~--~~~~~a~tg~AA~~i~~G~T~hs~ 75 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS--RGK--KVLVTAPTGIAAFNIPGGRTIHSF 75 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc--ccc--eEEEecchHHHHHhccCCcchHHh
Confidence 47899999988873 24568999999999999665 233333322 233 788999997766554 2333333
Q ss_pred hcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHH
Q 000114 1414 FGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (2158)
|+ +.+.. . ..... .+.+ .......++.++++|+||+=++. ...++.+-.+++.
T Consensus 76 f~----i~~~~----~-------~~~~~---~~~~------~~~~~~~l~~~~~lIiDEism~~---~~~l~~i~~~lr~ 128 (364)
T PF05970_consen 76 FG----IPINN----N-------EKSQC---KISK------NSRLRERLRKADVLIIDEISMVS---ADMLDAIDRRLRD 128 (364)
T ss_pred cC----ccccc----c-------ccccc---cccc------cchhhhhhhhheeeecccccchh---HHHHHHHHHhhhh
Confidence 32 11100 0 00001 1111 11123357889999999999885 3345556566666
Q ss_pred HHh
Q 000114 1494 IAS 1496 (2158)
Q Consensus 1494 i~~ 1496 (2158)
+..
T Consensus 129 i~~ 131 (364)
T PF05970_consen 129 IRK 131 (364)
T ss_pred hhc
Confidence 654
No 398
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.13 E-value=0.048 Score=69.18 Aligned_cols=109 Identities=23% Similarity=0.349 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHH-----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH--H
Q 000114 495 QLNRVQSRVYKSAL-----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV--V 567 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l-----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~--~ 567 (2158)
+||+-|++++..++ ....+++|.||-|+|||.+.- ++...+.. .+..++++|||-.-|.-+ .
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~----------~~~~~~~~a~tg~AA~~i~~G 69 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS----------RGKKVLVTAPTGIAAFNIPGG 69 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc----------ccceEEEecchHHHHHhccCC
Confidence 47999999998873 234579999999999997642 22222222 234799999997766655 2
Q ss_pred HHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc
Q 000114 568 GNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 568 ~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
..+...|+ +.+..- . .... .+.+ .......+..+++|||||+=+++.
T Consensus 70 ~T~hs~f~---i~~~~~----~-------~~~~---~~~~------~~~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 70 RTIHSFFG---IPINNN----E-------KSQC---KISK------NSRLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred cchHHhcC---cccccc----c-------cccc---cccc------cchhhhhhhhheeeecccccchhH
Confidence 33444332 222110 0 0000 1221 111224567789999999998753
No 399
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.10 E-value=0.091 Score=69.55 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHhc---CCCcEEEEccCCchhHHHHH---HHHHHHHHhh---------c-------------------
Q 000114 1341 HFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSE---FAILRNHQKA---------S------------------- 1386 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~---~~~nvli~ApTGSGKTl~a~---l~il~~l~~~---------~------------------- 1386 (2158)
+++|.|..-+..++. ...|.++-+|||+|||++.+ ||-.+++... .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 578888777666543 45679999999999997653 4444444410 0
Q ss_pred --C----CCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1387 --E----TGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1387 --~----~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
+ .+-|++.|-.-|.+-..|+.++++ +++
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElr-rT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELR-RTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHh-hcC
Confidence 0 012688888889999999999988 444
No 400
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.01 E-value=0.23 Score=66.57 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=25.2
Q ss_pred cE-EEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 513 NI-LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 513 nv-lv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
++ +|+||||+|||.+.-..+ +.+...... .....+.++||=-
T Consensus 782 nvLYIyG~PGTGKTATVK~VL-rELqeeaeq---k~lp~f~vVYINC 824 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVI-QLLQHKTKQ---KLLPSFNVFEING 824 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHH-HHHHHHHhh---ccCCCceEEEEeC
Confidence 45 599999999998876543 444321110 0123467888843
No 401
>PRK06526 transposase; Provisional
Probab=94.97 E-value=0.16 Score=60.92 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=21.5
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHH
Q 000114 508 LSSADNILLCAPTGAGKTNVAVLTILQQL 536 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l 536 (2158)
+....|++++||+|+|||..+.-......
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 34567899999999999987754444333
No 402
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.93 E-value=0.36 Score=57.33 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHhc-------CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1341 HFNPIQTQVFTVLYN-------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~-------~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
..++.|.+++..+.. +..++++.+|+|+|||..+ .++...+.. .+. .++|+ +..+|..
T Consensus 76 ~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa-~aia~~l~~--~g~--~v~~i-t~~~l~~ 140 (244)
T PRK07952 76 VECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLA-AAICNELLL--RGK--SVLII-TVADIMS 140 (244)
T ss_pred CCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHH-HHHHHHHHh--cCC--eEEEE-EHHHHHH
Confidence 334556656554321 1246999999999999877 455656655 122 55555 4444443
No 403
>PRK08181 transposase; Validated
Probab=94.88 E-value=0.15 Score=61.55 Aligned_cols=60 Identities=22% Similarity=0.408 Sum_probs=35.7
Q ss_pred CCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 496 LNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 496 l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
+++.|..++.. ......|++++||+|+|||-.+.....+.+.. +.+++|+ +...|+.++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-----------g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN-----------GWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc-----------CCceeee-eHHHHHHHHH
Confidence 34555555532 34567789999999999997665333333322 2245555 4555666553
No 404
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.87 E-value=0.39 Score=60.85 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=73.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccC
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2158)
..++++||||+|||.++.-.+.+........ | ....++.+=+.|.-+.++...+.+. +|+.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~-g----~~V~lit~Dt~R~aa~eQL~~~a~~---lgvpv~~-------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDK-S----LNIKIITIDNYRIGAKKQIQTYGDI---MGIPVKA-------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccC-C----CeEEEEeccCccHHHHHHHHHHhhc---CCcceEe--------
Confidence 4689999999999987754433322221000 1 2233445556677777776666554 3444321
Q ss_pred HhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhcccc-ccEEEEcccc
Q 000114 592 RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH-IRLVGLSATL 670 (2158)
Q Consensus 592 ~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~-~riv~lSATl 670 (2158)
+-+++.+...... +.+.++||||++.+.+.. ... +.++...+.....+ -.++.+|||.
T Consensus 239 ----------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~~-l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 239 ----------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FMK-LAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred ----------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HHH-HHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 1234433222222 245799999999987532 111 33444443433333 4678899996
Q ss_pred CChHHHHHHHh
Q 000114 671 PNYEDVALFLR 681 (2158)
Q Consensus 671 pn~~dv~~~l~ 681 (2158)
. ..++...+.
T Consensus 298 ~-~~~~~~~~~ 307 (388)
T PRK12723 298 K-TSDVKEIFH 307 (388)
T ss_pred C-HHHHHHHHH
Confidence 4 566665554
No 405
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.71 E-value=0.28 Score=56.43 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=69.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~ 593 (2158)
+++++|||+|||....-.+.+...++ .+.-.+-+=..|.=+.++.+.+.+.+ |+.+....-..
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~---------~~v~lis~D~~R~ga~eQL~~~a~~l---~vp~~~~~~~~----- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKG---------KKVALISADTYRIGAVEQLKTYAEIL---GVPFYVARTES----- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-----------EEEEEESTSSTHHHHHHHHHHHHH---TEEEEESSTTS-----
T ss_pred EEEECCCCCchHhHHHHHHHHHhhcc---------ccceeecCCCCCccHHHHHHHHHHHh---ccccchhhcch-----
Confidence 68899999999987655444443332 12234444456777888888887754 44443311110
Q ss_pred hhccccEEEcchhH-H-HHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 594 QIEETQIIVTTPEK-W-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 594 ~~~~~~IiV~TPek-l-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
.|.. + +.+.+ ...++.++|+||-+-+. +.-...+..+....+...+.--++.+|||..
T Consensus 67 ----------~~~~~~~~~l~~-----~~~~~~D~vlIDT~Gr~-----~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 67 ----------DPAEIAREALEK-----FRKKGYDLVLIDTAGRS-----PRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp ----------CHHHHHHHHHHH-----HHHTTSSEEEEEE-SSS-----STHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred ----------hhHHHHHHHHHH-----HhhcCCCEEEEecCCcc-----hhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 1111 1 11111 11234789999998643 3333344444444444455566788999975
Q ss_pred ChHHHHHHH
Q 000114 672 NYEDVALFL 680 (2158)
Q Consensus 672 n~~dv~~~l 680 (2158)
. +++....
T Consensus 127 ~-~~~~~~~ 134 (196)
T PF00448_consen 127 Q-EDLEQAL 134 (196)
T ss_dssp G-HHHHHHH
T ss_pred h-HHHHHHH
Confidence 3 4544433
No 406
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.70 E-value=0.21 Score=70.18 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
..|++-|.+++..+..++.-++|.|+-|+|||.+.- ++...+.. .+.+++-++||-.-+..+
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~----------~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA----------AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH----------cCCeEEEEcCcHHHHHHH
Confidence 479999999999887666678999999999996543 33333332 245899999997666554
No 407
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=94.64 E-value=0.15 Score=68.44 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
.|+.+|..-++. +|+.+=|-|+.-.-|-|||..- +.+|.++.-.... -+ --+||+||--+. .+.-+|+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegn------WG-PHLIVVpTsviL-nWEMElK 685 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGN------WG-PHLIVVPTSVIL-NWEMELK 685 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccC------CC-CceEEeechhhh-hhhHHHh
Confidence 578889887764 4667778999999999999654 2333333322111 12 247788986543 3444666
Q ss_pred hhcccCCcEEEEEeCCCccCHhh---h---ccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccCChhhHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQ---I---EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~---~---~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le 644 (2158)
+++. |+++..++|.....+.. + +..+|.|++...+ ..+.- ..-.+..++|+||+|.+...+...|+
T Consensus 686 RwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-----FkrkrWqyLvLDEaqnIKnfksqrWQ 758 (1958)
T KOG0391|consen 686 RWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-----FKRKRWQYLVLDEAQNIKNFKSQRWQ 758 (1958)
T ss_pred hhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-----HHhhccceeehhhhhhhcchhHHHHH
Confidence 6544 78999999976533322 2 3457888887754 11111 11123589999999999876666677
Q ss_pred HHHHHHHHHHhhccccccEEEEcccc
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
+++.- ..-|.++|+.|.
T Consensus 759 Allnf---------nsqrRLLLtgTP 775 (1958)
T KOG0391|consen 759 ALLNF---------NSQRRLLLTGTP 775 (1958)
T ss_pred HHhcc---------chhheeeecCCc
Confidence 76541 233457788883
No 408
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.62 E-value=0.29 Score=68.90 Aligned_cols=61 Identities=18% Similarity=0.049 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
..|++-|.+++..+..++.-++|.|+.|+|||.+. -++...|.. .+. +++-++||---+..
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--~G~--~V~g~ApTgkAA~~ 440 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--AGY--RVVGGALAGKAAEG 440 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCC--eEEEEcCcHHHHHH
Confidence 47999999999998766777899999999999665 344454544 233 88999999665544
No 409
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.56 E-value=0.43 Score=56.68 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=19.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHh
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLAL 538 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~ 538 (2158)
.++++++|+|+|||..+. +|...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 469999999999997764 44444443
No 410
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.56 E-value=0.07 Score=72.56 Aligned_cols=84 Identities=26% Similarity=0.268 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..||+-|.+|+. .+.++++|.|..|||||.+..--+...+..+.. .+-+|++++.++..|.++.+++..+
T Consensus 195 ~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~-------~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQA-------QPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC-------CHHHeEEEeccHHHHHHHHHHHHHh
Confidence 368999999885 345679999999999999887766666654321 2347999999999999999999876
Q ss_pred cccCCcEEEEEeCCCccCHhhhccccEEEcchhHH
Q 000114 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl 608 (2158)
++ ...|-|+|-..|
T Consensus 265 lg---------------------~~~v~v~TFHSl 278 (684)
T PRK11054 265 LG---------------------TEDITARTFHAL 278 (684)
T ss_pred cC---------------------CCCcEEEeHHHH
Confidence 42 035778888876
No 411
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.54 E-value=0.063 Score=73.51 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.||+-|.+|+.. ...+++|.|..|||||.+...-+.+.+..... +.-+|++++.|+..|.++.+++.+.+
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v-------~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeeeEechHHHHHHHHHHHHHHh
Confidence 489999999864 34679999999999999988777777754211 23479999999999999999998765
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl 608 (2158)
+.. ....+.|+|...|
T Consensus 72 ~~~------------------~~~~v~i~TfHS~ 87 (672)
T PRK10919 72 GRK------------------EARGLMISTFHTL 87 (672)
T ss_pred Ccc------------------cccCcEEEcHHHH
Confidence 320 0134778898886
No 412
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.49 E-value=0.35 Score=55.66 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=71.5
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccC
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~ 1438 (2158)
.+++++|||+|||....--..+...+ +..+..+-+=..|.=+.++.+.+.+.+ |+.+....-..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~--------- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTES--------- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTS---------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcch---------
Confidence 37889999999998764333322222 332334455567888888888777655 44543322111
Q ss_pred CcEEEeCHHHH-HHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1439 GQIIISTPEKW-DALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
.|..+ ...++. ..-++.++|+||=+-+. +.-+..+..++.+.....+.-.++.+|||...
T Consensus 67 ------~~~~~~~~~l~~----~~~~~~D~vlIDT~Gr~-----~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 67 ------DPAEIAREALEK----FRKKGYDLVLIDTAGRS-----PRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp ------CHHHHHHHHHHH----HHHTTSSEEEEEE-SSS-----STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred ------hhHHHHHHHHHH----HhhcCCCEEEEecCCcc-----hhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 12111 112222 11245789999987643 33344667777776666666778889999854
No 413
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.46 E-value=0.81 Score=57.10 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=80.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
+..+.+.||||.|||....-.+.+....... .+..+|=+=..|-=|.++.+.+.+.+ |+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-------~kVaiITtDtYRIGA~EQLk~Ya~im---~vp~--------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-------KKVAIITTDTYRIGAVEQLKTYADIM---GVPL--------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-------cceEEEEeccchhhHHHHHHHHHHHh---CCce---------
Confidence 5678999999999997654433344322211 12223333344555777777776654 3333
Q ss_pred CHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
.+|-+|.-++.-. ..+++.++|.||=+-+ ++.=...++.+........+--..+.+|||
T Consensus 264 ---------~vv~~~~el~~ai------~~l~~~d~ILVDTaGr-----s~~D~~~i~el~~~~~~~~~i~~~Lvlsat- 322 (407)
T COG1419 264 ---------EVVYSPKELAEAI------EALRDCDVILVDTAGR-----SQYDKEKIEELKELIDVSHSIEVYLVLSAT- 322 (407)
T ss_pred ---------EEecCHHHHHHHH------HHhhcCCEEEEeCCCC-----CccCHHHHHHHHHHHhccccceEEEEEecC-
Confidence 3444565552222 2345668888887743 333333344444333333334456789999
Q ss_pred CChHHHHHHHhccccCceEEecCCcccccceeEEE
Q 000114 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705 (2158)
Q Consensus 671 pn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~ 705 (2158)
..++|+...+. .|+.+++...++
T Consensus 323 ~K~~dlkei~~------------~f~~~~i~~~I~ 345 (407)
T COG1419 323 TKYEDLKEIIK------------QFSLFPIDGLIF 345 (407)
T ss_pred cchHHHHHHHH------------HhccCCcceeEE
Confidence 46788877664 356666665443
No 414
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.45 E-value=0.092 Score=63.06 Aligned_cols=124 Identities=19% Similarity=0.245 Sum_probs=71.4
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCC--ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETG--VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~--~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
.|++|+|+||.|||.+..-..-.|-....... -|.+++-+|...-....|..+-..++-..+- .+.....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~------~~~~~~~-- 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP------RDRVAKL-- 133 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC------CCCHHHH--
Confidence 48999999999999865332222211111111 1344566788777777777766565432100 0000000
Q ss_pred ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEec
Q 000114 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508 (2158)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lS 1508 (2158)
-.+...+++. -+++++||||+|.+..-.+..-+.+++-++++...+ .+.+|++.
T Consensus 134 ----------~~~~~~llr~-------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~vG 187 (302)
T PF05621_consen 134 ----------EQQVLRLLRR-------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIVGVG 187 (302)
T ss_pred ----------HHHHHHHHHH-------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeEEec
Confidence 0111233333 467899999999987655555677888888887654 46666653
No 415
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.43 E-value=0.1 Score=69.65 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=82.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
+..+|.-|++|+..++...+-.+|.|=+|+|||......| +.+.. .++ +++..+=|..-++-+.-+++ .++
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~--~gk--kVLLtsyThsAVDNILiKL~-~~~--- 737 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA--LGK--KVLLTSYTHSAVDNILIKLK-GFG--- 737 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH--cCC--eEEEEehhhHHHHHHHHHHh-ccC---
Confidence 5689999999999999888889999999999997654433 33322 244 89999999988888887776 332
Q ss_pred CcEEEEEc---------------CCcchh-----hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1419 GMRVVELT---------------GETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1419 g~~v~~lt---------------G~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+.+..+. .+.+.. .+.+.+..||.+|-=-+...+. ..+.++++|||||-.+.
T Consensus 738 -i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf------~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 738 -IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF------VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred -cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh------hccccCEEEEccccccc
Confidence 2222221 111111 2455677888888432222111 23568999999998775
No 416
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.22 E-value=0.2 Score=59.28 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=28.0
Q ss_pred cccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 620 ~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
....++.||+||||.|..+-. +-+++.++......|+++..--+.
T Consensus 126 ~~~~fKiiIlDEcdsmtsdaq-------~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDAQ-------AALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhhHHHH-------HHHHHHHhccccceEEEEEcCChh
Confidence 345578999999998853221 123334455566788888765543
No 417
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.08 E-value=0.51 Score=63.48 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=23.9
Q ss_pred CcE-EEEccCCchhHHHHHHHHHHHHHhhcC---CCceEEEEEc
Q 000114 1358 DNV-LVAAPTGSGKTICSEFAILRNHQKASE---TGVMRAVYIA 1397 (2158)
Q Consensus 1358 ~nv-li~ApTGSGKTl~a~l~il~~l~~~~~---~~~~~~v~Ia 1397 (2158)
.++ +|.|+||+|||.+.-. +++.+..... ...+.++||-
T Consensus 781 nnvLYIyG~PGTGKTATVK~-VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYS-VIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHHHHHhhccCCCceEEEEe
Confidence 355 5999999999998854 3455433111 1124667774
No 418
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.07 E-value=0.13 Score=54.95 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=27.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
..+++++||+|+|||..+...+... ... ...++++.+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~-~~~----------~~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL-GPP----------GGGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc-CCC----------CCCEEEECCEEccccC
Confidence 3569999999999998764443222 111 1247888887665443
No 419
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.07 E-value=0.13 Score=54.89 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=28.8
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
+.++++.||+|+|||.++...+ ..+.. ... .++++.+........
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~--~~~--~~~~~~~~~~~~~~~ 46 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGP--PGG--GVIYIDGEDILEEVL 46 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCC--CCC--CEEEECCEEccccCH
Confidence 4579999999999998874433 33322 111 477887776554433
No 420
>PRK08116 hypothetical protein; Validated
Probab=94.03 E-value=0.55 Score=56.89 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=29.2
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
.+++.|++|+|||..+ .++.+.+... +. .++|+ +..+++.++..
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~~--~~--~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIEK--GV--PVIFV-NFPQLLNRIKS 159 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHHc--CC--eEEEE-EHHHHHHHHHH
Confidence 3999999999999887 4677776652 22 45554 45555554433
No 421
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.98 E-value=0.26 Score=59.71 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=17.5
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~i 532 (2158)
.++++.||+|+|||.++-...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 479999999999998885543
No 422
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=93.94 E-value=0.072 Score=48.65 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=48.7
Q ss_pred ccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHc
Q 000114 1978 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 2034 (2158)
Q Consensus 1978 ~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~ 2034 (2158)
.|.++||+++..+++|.+.| +.|+.||...++++...+-++++...+.+.+.++
T Consensus 6 ~L~~I~Gig~~~a~~L~~~G---~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKLYEAG---IKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHTSTTCHHHHHHHHHHTT---CSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHhcC---CCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999 9999999999998888877899999999888775
No 423
>PRK04296 thymidine kinase; Provisional
Probab=93.93 E-value=0.11 Score=59.51 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=23.8
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
.++.+|+|+|||..+.-.+.+.... +. +++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~--~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GM--KVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CC--eEEEEec
Confidence 6889999999998775554444332 33 7777766
No 424
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.92 E-value=0.76 Score=57.42 Aligned_cols=129 Identities=20% Similarity=0.198 Sum_probs=67.9
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEE-EEc-ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAV-YIA-PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v-~Ia-P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
...+.++||||+|||..+..-... +.. .+. ++. +-+ |.|.-+.++...+.+. .|+.+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~~--~Gk--kVglI~aDt~RiaAvEQLk~yae~----lgipv------------ 299 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FHG--KKK--TVGFITTDHSRIGTVQQLQDYVKT----IGFEV------------ 299 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHH--cCC--cEEEEecCCcchHHHHHHHHHhhh----cCCcE------------
Confidence 356899999999999876444333 322 122 333 333 5554444444444422 23322
Q ss_pred cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh
Q 000114 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~ 1514 (2158)
+++.+|..+...+..... -.+.++|+||-+=+.... ...+..+..+.....+...++.+|||.. .
T Consensus 300 ------~v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~~~PdevlLVLsATtk-~ 364 (436)
T PRK11889 300 ------IAVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRA-----SETVEEMIETMGQVEPDYICLTLSASMK-S 364 (436)
T ss_pred ------EecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhhcCCCeEEEEECCccC-h
Confidence 223466666554444221 125789999988654321 1234445544443334445667999864 3
Q ss_pred HHHHHHh
Q 000114 1515 KDLGEWI 1521 (2158)
Q Consensus 1515 ~dl~~wl 1521 (2158)
.++.+.+
T Consensus 365 ~d~~~i~ 371 (436)
T PRK11889 365 KDMIEII 371 (436)
T ss_pred HHHHHHH
Confidence 3444433
No 425
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.88 E-value=0.16 Score=62.35 Aligned_cols=62 Identities=31% Similarity=0.310 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
...+++-|.+.+..+...+.|++|+||||||||... -+++..+....+.. ++++|--..|+.
T Consensus 114 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~--ri~tiEd~~El~ 175 (299)
T TIGR02782 114 AGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTD--RVVIIEDTRELQ 175 (299)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCc--eEEEECCchhhc
Confidence 345778888999888888899999999999999876 55666655422234 888888888773
No 426
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.84 E-value=0.57 Score=58.91 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=65.4
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHhhcccCCcEEEEEeC
Q 000114 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSG 586 (2158)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia--P~kaLa~q~~~~~~~~~~~~gi~v~~l~G 586 (2158)
..+.++++++|||+|||..+...+.+...... ..++.++. +.+.=+.++.+.+.+.+ |+.+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G---------~~~V~lit~D~~R~ga~EqL~~~a~~~---gv~~~~~-- 200 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFG---------ASKVALLTTDSYRIGGHEQLRIFGKIL---GVPVHAV-- 200 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---------CCeEEEEecccccccHHHHHHHHHHHc---CCceEec--
Confidence 44568999999999999877555444433221 11343332 22334666666666543 4444322
Q ss_pred CCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEE
Q 000114 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (2158)
Q Consensus 587 d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~l 666 (2158)
.+++.+.....+ +.+.++|+||.+=+.. +...+...+..+. ......-+++.+
T Consensus 201 ----------------~~~~~l~~~l~~------l~~~DlVLIDTaG~~~--~d~~l~e~La~L~---~~~~~~~~lLVL 253 (374)
T PRK14722 201 ----------------KDGGDLQLALAE------LRNKHMVLIDTIGMSQ--RDRTVSDQIAMLH---GADTPVQRLLLL 253 (374)
T ss_pred ----------------CCcccHHHHHHH------hcCCCEEEEcCCCCCc--ccHHHHHHHHHHh---ccCCCCeEEEEe
Confidence 233322122221 2346899999996432 2122222222221 112233467889
Q ss_pred ccccCChHHHHH
Q 000114 667 SATLPNYEDVAL 678 (2158)
Q Consensus 667 SATlpn~~dv~~ 678 (2158)
|||.. .+++..
T Consensus 254 sAts~-~~~l~e 264 (374)
T PRK14722 254 NATSH-GDTLNE 264 (374)
T ss_pred cCccC-hHHHHH
Confidence 99964 344433
No 427
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=93.80 E-value=0.19 Score=66.42 Aligned_cols=146 Identities=16% Similarity=0.253 Sum_probs=79.5
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH---HHHHHHh-cCC-CCcEEEEEcCCc
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY---RDWEIKF-GQG-LGMRVVELTGET 1429 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~---~~~~~~f-~~~-~g~~v~~ltG~~ 1429 (2158)
.+.-|+=|.+.||+|||.||+-.|+..-.. -|-.+-|++||+.|+-.-++ ...++.| +.. .+.+.-.++-+.
T Consensus 72 ~~~lNiDI~METGTGKTy~YlrtmfeLhk~---YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~ 148 (985)
T COG3587 72 DDKLNIDILMETGTGKTYTYLRTMFELHKK---YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE 148 (985)
T ss_pred CCcceeeEEEecCCCceeeHHHHHHHHHHH---hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech
Confidence 344578899999999999998888876555 23348999999998865433 3344445 322 223333332221
Q ss_pred ch---hhhcccCCcEEEeCHHHHHHH------Hhh----hhc-----cccc---cce-eEEEecccccccCCCCChHHHH
Q 000114 1430 AM---DLKLLEKGQIIISTPEKWDAL------SRR----WKQ-----RKYV---QQV-SLFIIDELHLIGGQGGPVLEVI 1487 (2158)
Q Consensus 1430 ~~---~~~~l~~~~IIV~TPe~l~~l------~r~----~~~-----~~~l---~~v-~llIiDEaH~l~~~~g~~~e~~ 1487 (2158)
.. ....-..+.+++.|-..+..- +.. ... ...+ ..+ -.+||||-|.+..+. - .
T Consensus 149 ~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~-k----~ 223 (985)
T COG3587 149 DIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDD-K----T 223 (985)
T ss_pred HHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccch-H----H
Confidence 11 111223346666665443211 000 000 1111 111 369999999886421 1 2
Q ss_pred HHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1488 VSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
...+..+ .+.-++=+|||.++
T Consensus 224 ~~~i~~l-----~pl~ilRfgATfkd 244 (985)
T COG3587 224 YGAIKQL-----NPLLILRFGATFKD 244 (985)
T ss_pred HHHHHhh-----CceEEEEecccchh
Confidence 2222222 25566778999865
No 428
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.78 E-value=0.15 Score=62.96 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
...+++.|.+.+..+...+.|++|+|+||||||... -+++..+....+.. +++.|-...||.
T Consensus 126 ~g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~--rivtiEd~~El~ 187 (323)
T PRK13833 126 SKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPED--RLVILEDTAEIQ 187 (323)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCc--eEEEecCCcccc
Confidence 345788999999998888899999999999999776 55666654322333 788887777763
No 429
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.77 E-value=0.45 Score=61.98 Aligned_cols=108 Identities=13% Similarity=0.185 Sum_probs=61.5
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhccc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~ 1437 (2158)
..+++.||+|+|||... .++.+.+....++. +++|+.+ .++..+....+... .
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~--~v~yv~~-~~f~~~~~~~l~~~------~----------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDL--KVSYMSG-DEFARKAVDILQKT------H----------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCC--eEEEEEH-HHHHHHHHHHHHHh------h-----------------
Confidence 35899999999999666 56666655433333 7777765 45555554444310 0
Q ss_pred CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCC
Q 000114 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2158)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl 1511 (2158)
+.+..+..+ +.+++++||||+|.+.... ...+.+..-+..+.. .+.++|+.|-..
T Consensus 195 ---------~~~~~~~~~------~~~~dvLiIDDiq~l~~k~-~~~e~lf~l~N~~~~---~~k~iIltsd~~ 249 (450)
T PRK14087 195 ---------KEIEQFKNE------ICQNDVLIIDDVQFLSYKE-KTNEIFFTIFNNFIE---NDKQLFFSSDKS 249 (450)
T ss_pred ---------hHHHHHHHH------hccCCEEEEeccccccCCH-HHHHHHHHHHHHHHH---cCCcEEEECCCC
Confidence 111112222 4567899999999885322 234445554544432 244665555443
No 430
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.76 E-value=0.49 Score=56.24 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHhc--CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1342 FNPIQTQVFTVLYN--TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~--~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
.|.....++..+.. +..+++++||+|+|||..+. ++.+.+.. .+. +++|+.-
T Consensus 28 ~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~-a~~~~~~~--~~~--~v~y~~~ 81 (235)
T PRK08084 28 DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLH-AACAELSQ--RGR--AVGYVPL 81 (235)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHH-HHHHHHHh--CCC--eEEEEEH
Confidence 44444555555432 33579999999999997774 33333333 122 6666644
No 431
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.62 E-value=0.26 Score=66.05 Aligned_cols=122 Identities=20% Similarity=0.273 Sum_probs=80.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
...||.-|++|+..++...+-.||.|=.|+|||.+....|--.+. .+.+|+..+=|..-+..+.-.+..
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~-----------~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA-----------LGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH-----------cCCeEEEEehhhHHHHHHHHHHhc
Confidence 358999999999999999888999999999999765443322222 234899999998888777666654
Q ss_pred hcccCCcEEEEEeCCCccCH--------------------hhhccccEEEcchhHH-HHHHhccCCCccccccceEEeec
Q 000114 573 RLQMYDVKVRELSGDQTLTR--------------------QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDE 631 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~--------------------~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDE 631 (2158)
.++.+..+..+....+ ...+.+.|+.||-=-+ +.+ ...+.+++.||||
T Consensus 736 ----~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-------f~~R~FD~cIiDE 804 (1100)
T KOG1805|consen 736 ----FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL-------FVNRQFDYCIIDE 804 (1100)
T ss_pred ----cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh-------hhccccCEEEEcc
Confidence 3444333322222211 1235677888884322 112 2234589999999
Q ss_pred ccccc
Q 000114 632 IHLLH 636 (2158)
Q Consensus 632 aH~l~ 636 (2158)
|-.++
T Consensus 805 ASQI~ 809 (1100)
T KOG1805|consen 805 ASQIL 809 (1100)
T ss_pred ccccc
Confidence 98664
No 432
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.61 E-value=1.2 Score=58.74 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 495 QLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
-++|.=.+-++.+++. ..-.++.+|=|.|||.+..+.+...+.. .+.+|+|.+|...-++++++.+..
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----------~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----------LEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----------cCCeEEEECCChhhHHHHHHHHHH
Confidence 3455555555555432 2346788999999999887666654432 135899999999999999999888
Q ss_pred hcccCC--------cEEEEEeCCCc-----cCHhhh-ccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccC
Q 000114 573 RLQMYD--------VKVRELSGDQT-----LTRQQI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2158)
Q Consensus 573 ~~~~~g--------i~v~~l~Gd~~-----~~~~~~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~ 638 (2158)
.+..++ -++....|+.. ...... ..+.|.+++-. . +...-..++++|+|||+.+.+
T Consensus 239 ~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~-~s~RG~~~DLLIVDEAAfI~~- 308 (752)
T PHA03333 239 VVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------P-NAARGQNPDLVIVDEAAFVNP- 308 (752)
T ss_pred HHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------C-CCcCCCCCCEEEEECcccCCH-
Confidence 776332 11222333221 000000 11223332211 1 111113468999999998864
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
+.++.++--+ . ....+++.+|-+-
T Consensus 309 --~~l~aIlP~l----~--~~~~k~IiISS~~ 332 (752)
T PHA03333 309 --GALLSVLPLM----A--VKGTKQIHISSPV 332 (752)
T ss_pred --HHHHHHHHHH----c--cCCCceEEEeCCC
Confidence 3455543322 2 2467778888774
No 433
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.61 E-value=0.19 Score=68.39 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=68.2
Q ss_pred HHHHhcCC--CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHH
Q 000114 1332 YEALYQGF--KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1332 ~~~l~~gf--~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
+..+|..+ ..+|+-|.+|+. .+.++++|.|..|||||.+..--+...+.... ... ++++++.++..|.++.+
T Consensus 185 ~~~~f~~~e~~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~--~IL~ltft~~AA~em~e 259 (684)
T PRK11054 185 YADFFSQVESSPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPE--QILLLAFGRQAAEEMDE 259 (684)
T ss_pred HHHHHHhccCCCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHH--HeEEEeccHHHHHHHHH
Confidence 45555532 469999999985 34567999999999999887555544444321 222 89999999999999988
Q ss_pred HHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHH-HHHhh
Q 000114 1409 DWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRR 1455 (2158)
Q Consensus 1409 ~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~-~l~r~ 1455 (2158)
++..+++ ...|-|+|-..|. .+++.
T Consensus 260 RL~~~lg----------------------~~~v~v~TFHSlal~Il~~ 285 (684)
T PRK11054 260 RIRERLG----------------------TEDITARTFHALALHIIQQ 285 (684)
T ss_pred HHHHhcC----------------------CCCcEEEeHHHHHHHHHHH
Confidence 8875542 1257888877774 34444
No 434
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.53 E-value=0.22 Score=59.85 Aligned_cols=121 Identities=19% Similarity=0.150 Sum_probs=64.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccC
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2158)
.|++++|+||.|||.+.. +....++...+.-...-+-+++-+|..+=....+..+-..++ ..... .+
T Consensus 62 p~lLivG~snnGKT~Ii~----rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg---aP~~~--~~---- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIE----RFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG---APYRP--RD---- 128 (302)
T ss_pred CceEEecCCCCcHHHHHH----HHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC---cccCC--CC----
Confidence 489999999999997542 222333322111111224455567777766666666554332 22110 00
Q ss_pred HhhhccccEEEcchhHH----HHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEE
Q 000114 592 RQQIEETQIIVTTPEKW----DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (2158)
Q Consensus 592 ~~~~~~~~IiV~TPekl----d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~l 666 (2158)
+..+. ..+.+.. .++++||||+|.+..+....-..+++-+.... ..-.+.+|++
T Consensus 129 ------------~~~~~~~~~~~llr~~-------~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~--NeL~ipiV~v 186 (302)
T PF05621_consen 129 ------------RVAKLEQQVLRLLRRL-------GVRMLIIDEFHNLLAGSYRKQREFLNALKFLG--NELQIPIVGV 186 (302)
T ss_pred ------------CHHHHHHHHHHHHHHc-------CCcEEEeechHHHhcccHHHHHHHHHHHHHHh--hccCCCeEEe
Confidence 11111 1233332 47999999999987654444444444443332 2335666765
No 435
>PRK06893 DNA replication initiation factor; Validated
Probab=93.51 E-value=0.51 Score=55.92 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=22.9
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
..+++.||+|+|||..+ .++.+.+.+. +. +++|+.-
T Consensus 40 ~~l~l~G~~G~GKThL~-~ai~~~~~~~--~~--~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLL-KAVSNHYLLN--QR--TAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc--CC--CeEEeeH
Confidence 34799999999999777 3444444331 22 5666553
No 436
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.51 E-value=0.8 Score=61.53 Aligned_cols=144 Identities=19% Similarity=0.276 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc
Q 000114 497 NRVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2158)
Q Consensus 497 ~~iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~ 575 (2158)
..-|.+.+..++..+. -+++.|.=|=|||.++-+++....... ....|++.+|+++-++....-..+.+.
T Consensus 216 Q~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~---------~~~~iiVTAP~~~nv~~Lf~fa~~~l~ 286 (758)
T COG1444 216 QAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA---------GSVRIIVTAPTPANVQTLFEFAGKGLE 286 (758)
T ss_pred HHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc---------CCceEEEeCCCHHHHHHHHHHHHHhHH
Confidence 3334445566666655 678999999999999887773332221 134899999999999998888877777
Q ss_pred cCCcEEEEEeCC-CccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHH
Q 000114 576 MYDVKVRELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2158)
Q Consensus 576 ~~gi~v~~l~Gd-~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~ 654 (2158)
.+|.+-...... .......-....|=+-+|..- . ..-+++|||||=.++ -|.++.++.+
T Consensus 287 ~lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a-----------~-~~~DllvVDEAAaIp---lplL~~l~~~----- 346 (758)
T COG1444 287 FLGYKRKVAPDALGEIREVSGDGFRIEYVPPDDA-----------Q-EEADLLVVDEAAAIP---LPLLHKLLRR----- 346 (758)
T ss_pred HhCCccccccccccceeeecCCceeEEeeCcchh-----------c-ccCCEEEEehhhcCC---hHHHHHHHhh-----
Confidence 666543222111 111111112334666677631 1 115899999998764 2334444332
Q ss_pred hhccccccEEEEccccCChHH
Q 000114 655 ETTKEHIRLVGLSATLPNYED 675 (2158)
Q Consensus 655 ~~~~~~~riv~lSATlpn~~d 675 (2158)
.+.++||.|+..|+-
T Consensus 347 ------~~rv~~sTTIhGYEG 361 (758)
T COG1444 347 ------FPRVLFSTTIHGYEG 361 (758)
T ss_pred ------cCceEEEeeeccccc
Confidence 245899999987753
No 437
>PRK14974 cell division protein FtsY; Provisional
Probab=93.49 E-value=0.58 Score=58.22 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=67.3
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc--cHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP--LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP--~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
.-+++++|+|+|||....-.+ ..+.. .+. +++++.. .|.-+.++...+...+ |+.+.. +....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~--~g~--~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~--~~~g~---- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK--NGF--SVVIAAGDTFRAGAIEQLEEHAERL----GVKVIK--HKYGA---- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH--cCC--eEEEecCCcCcHHHHHHHHHHHHHc----CCceec--ccCCC----
Confidence 357889999999998653333 23333 222 5655543 3455555555555444 344321 11111
Q ss_pred ccCCcEEEeCHHH-HHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1436 LEKGQIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1436 l~~~~IIV~TPe~-l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
.|.. +....... .....++|+||.++++.... ..+..++.+.....+...++.++||..+
T Consensus 206 ---------dp~~v~~~ai~~~----~~~~~DvVLIDTaGr~~~~~-----~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 206 ---------DPAAVAYDAIEHA----KARGIDVVLIDTAGRMHTDA-----NLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred ---------CHHHHHHHHHHHH----HhCCCCEEEEECCCccCCcH-----HHHHHHHHHHHhhCCceEEEeeccccch
Confidence 1211 11111111 12456899999999875322 2556666665555667778889998764
No 438
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.44 E-value=0.13 Score=64.95 Aligned_cols=151 Identities=16% Similarity=0.170 Sum_probs=79.6
Q ss_pred EEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-------
Q 000114 1362 VAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK------- 1434 (2158)
Q Consensus 1362 i~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~------- 1434 (2158)
..+.||||||++..-.|+....++. . .-++.|..-..+......+..-.....=.+-....+|.....+
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy--r--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse 77 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY--R--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE 77 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch--h--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc
Confidence 3578999999998778887776621 1 5677777666665554433211110000000111222222211
Q ss_pred cccCCcEEEeCHHHHHHHHhhhhccc----cccceeE-EEecccccccCCC-C---------ChHHHHHHHHHHHHhhcC
Q 000114 1435 LLEKGQIIISTPEKWDALSRRWKQRK----YVQQVSL-FIIDELHLIGGQG-G---------PVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~----~l~~v~l-lIiDEaH~l~~~~-g---------~~~e~~isrl~~i~~~~~ 1499 (2158)
.-..-.|.++|.+.+...+.+.+... .+.+..+ ++-||+|++.... + ..||..+. ..-..+
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~----la~~~n 153 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVK----LALEQN 153 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHH----HHHhcC
Confidence 11123799999999876555433221 3444444 5679999997521 1 12333221 111124
Q ss_pred CCceEEEeccCCCChHHHHHH
Q 000114 1500 NKIRIVALSTSLANAKDLGEW 1520 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~dl~~w 1520 (2158)
++--++.+|||++...++..-
T Consensus 154 kd~~~lef~at~~k~k~v~~k 174 (812)
T COG3421 154 KDNLLLEFSATIPKEKSVEDK 174 (812)
T ss_pred CCceeehhhhcCCccccHHHH
Confidence 556667789999865555443
No 439
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.38 E-value=0.57 Score=58.90 Aligned_cols=122 Identities=12% Similarity=0.180 Sum_probs=63.8
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia--P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~ 1433 (2158)
.+.++++++|||+|||.....-+.+.... .... ++.++. +.|.-+.++...|.+.+ |+.+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~-~G~~--~V~lit~D~~R~ga~EqL~~~a~~~----gv~~~~--------- 199 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR-FGAS--KVALLTTDSYRIGGHEQLRIFGKIL----GVPVHA--------- 199 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCC--eEEEEecccccccHHHHHHHHHHHc----CCceEe---------
Confidence 46679999999999998874444333322 1112 333332 23444566666666443 333322
Q ss_pred hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+.+++.+...+.+ +.+.++++||.+-...-+ . .+...+..+.......-+++.+|||...
T Consensus 200 ---------~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~~d--~---~l~e~La~L~~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 200 ---------VKDGGDLQLALAE------LRNKHMVLIDTIGMSQRD--R---TVSDQIAMLHGADTPVQRLLLLNATSHG 259 (374)
T ss_pred ---------cCCcccHHHHHHH------hcCCCEEEEcCCCCCccc--H---HHHHHHHHHhccCCCCeEEEEecCccCh
Confidence 2233333333333 345689999999643211 1 1333333332222234568889999743
No 440
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.36 E-value=0.33 Score=53.58 Aligned_cols=40 Identities=35% Similarity=0.476 Sum_probs=26.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
++|+||+|+|||..+...+...... +..++|+.....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-----------~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-----------GGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-----------CCEEEEEECCcchHH
Confidence 6899999999998775554443321 236888877655443
No 441
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.36 E-value=0.26 Score=68.43 Aligned_cols=110 Identities=19% Similarity=0.116 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
..|||-|.+|+.. ...+++|.|..|||||.+..--+...+... -+.. ++++|+.|+..|.++.+++.+.++..
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~--~IL~lTFTnkAA~em~~Rl~~~~~~~- 76 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPH--SIMAVTFTNKAAAEMRHRIGALLGTS- 76 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHH--HeEeeeccHHHHHHHHHHHHHHhccc-
Confidence 4699999999864 356799999999999988755555555431 1223 79999999999999888887543310
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHH-HHhhhhccccccceeEEEeccccc
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDA-LSRRWKQRKYVQQVSLFIIDELHL 1475 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~-l~r~~~~~~~l~~v~llIiDEaH~ 1475 (2158)
...+.|+|...|.. ++|+......+. -.+-|+|+.+.
T Consensus 77 -------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 -------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred -------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 12577899887753 555432111111 12346677653
No 442
>PRK08727 hypothetical protein; Validated
Probab=93.33 E-value=0.56 Score=55.67 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=23.2
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia 1397 (2158)
+.+++.||+|+|||..+. ++...+.+ .+. +++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~--~~~--~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQ--AGR--SSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH--cCC--cEEEEe
Confidence 349999999999997764 44444433 122 677764
No 443
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.33 E-value=0.042 Score=61.39 Aligned_cols=130 Identities=20% Similarity=0.264 Sum_probs=56.2
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh
Q 000114 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (2158)
Q Consensus 515 lv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~ 594 (2158)
++.|+=|-|||.+.-+++.+.+.. ...+|++.+|..+=++..++.+...+..++.+............-.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----------cCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence 578999999998766665444332 2247999999999888888777665555444431000000000011
Q ss_pred hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChH
Q 000114 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE 674 (2158)
Q Consensus 595 ~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~ 674 (2158)
.....|-+..|+.+ ... -...+++|||||=.+. -+.+ .++ -.....+.+|.|+..||
T Consensus 71 ~~~~~i~f~~Pd~l---~~~------~~~~DlliVDEAAaIp---~p~L----~~l-------l~~~~~vv~stTi~GYE 127 (177)
T PF05127_consen 71 FNKQRIEFVAPDEL---LAE------KPQADLLIVDEAAAIP---LPLL----KQL-------LRRFPRVVFSTTIHGYE 127 (177)
T ss_dssp --CCC--B--HHHH---CCT----------SCEEECTGGGS----HHHH----HHH-------HCCSSEEEEEEEBSSTT
T ss_pred cccceEEEECCHHH---HhC------cCCCCEEEEechhcCC---HHHH----HHH-------HhhCCEEEEEeeccccc
Confidence 12456777777742 211 1234899999998763 1122 222 12334577888888776
Q ss_pred HHH
Q 000114 675 DVA 677 (2158)
Q Consensus 675 dv~ 677 (2158)
--.
T Consensus 128 GtG 130 (177)
T PF05127_consen 128 GTG 130 (177)
T ss_dssp BB-
T ss_pred cCC
Confidence 543
No 444
>PHA02533 17 large terminase protein; Provisional
Probab=93.33 E-value=0.9 Score=60.18 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
.++|+|...+..+...+- .++..+=..|||.+....++..... .++. .+++++|++.-+..+++.++..+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~-~ii~~aRq~GKStl~a~~al~~a~~-~~~~--~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRF-NACNLSRQLGKTTVVAIFLLHYVCF-NKDK--NVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeE-EEEEEcCcCChHHHHHHHHHHHHHh-CCCC--EEEEEeCCHHHHHHHHHHHHHHHH
Confidence 588999999988755445 4678888999998876444433332 2333 899999999999999988875444
No 445
>PRK08116 hypothetical protein; Validated
Probab=93.31 E-value=0.8 Score=55.49 Aligned_cols=45 Identities=24% Similarity=0.449 Sum_probs=29.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
++++||+|+|||..+. +|.+.+... +..++|+ +...|..++...+
T Consensus 117 l~l~G~~GtGKThLa~-aia~~l~~~----------~~~v~~~-~~~~ll~~i~~~~ 161 (268)
T PRK08116 117 LLLWGSVGTGKTYLAA-CIANELIEK----------GVPVIFV-NFPQLLNRIKSTY 161 (268)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHc----------CCeEEEE-EHHHHHHHHHHHH
Confidence 9999999999998775 455655542 1245554 4556655554443
No 446
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.23 E-value=0.14 Score=70.20 Aligned_cols=109 Identities=20% Similarity=0.178 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
.+|+-|.+|+.. ...+++|.|..|||||.+...-+...+... .+.. ++++|+.|+..|.++.+++.+.++..
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~em~~Rl~~~l~~~-- 74 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVAQTLGRK-- 74 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHH--HeeeEechHHHHHHHHHHHHHHhCcc--
Confidence 489999999864 356799999999999998866666666431 2233 79999999999999888887554320
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHH-HHHhhhhccccccceeEEEecccc
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
....+.|+|...|. .++++......+ .-++-|+|+.+
T Consensus 75 -----------------~~~~v~i~TfHS~~~~iLr~~~~~~g~-~~~~~i~d~~~ 112 (672)
T PRK10919 75 -----------------EARGLMISTFHTLGLDIIKREYAALGM-KSNFSLFDDTD 112 (672)
T ss_pred -----------------cccCcEEEcHHHHHHHHHHHHHHHhCC-CCCCeeCCHHH
Confidence 01257889988774 344442211111 11244667655
No 447
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.20 E-value=1.1 Score=52.73 Aligned_cols=123 Identities=20% Similarity=0.317 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHcCCC----cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 497 NRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 497 ~~iQ~~~i~~~l~~~~----nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
|..=..+...+..+.+ .++++||+|+|||-. +.++.+.+.... .+.+++|+... +...+....+..
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~--------~~~~v~y~~~~-~f~~~~~~~~~~ 85 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQH--------PGKRVVYLSAE-EFIREFADALRD 85 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHC--------TTS-EEEEEHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhcc--------ccccceeecHH-HHHHHHHHHHHc
Confidence 4433344444444322 389999999999973 455555554421 23478877643 444444443332
Q ss_pred hcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHH
Q 000114 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~ 652 (2158)
...+. +. ..+...++++||.+|.+.+. +.++..+-.+..
T Consensus 86 ------------------------------~~~~~---~~------~~~~~~DlL~iDDi~~l~~~--~~~q~~lf~l~n 124 (219)
T PF00308_consen 86 ------------------------------GEIEE---FK------DRLRSADLLIIDDIQFLAGK--QRTQEELFHLFN 124 (219)
T ss_dssp ------------------------------TSHHH---HH------HHHCTSSEEEEETGGGGTTH--HHHHHHHHHHHH
T ss_pred ------------------------------ccchh---hh------hhhhcCCEEEEecchhhcCc--hHHHHHHHHHHH
Confidence 01121 11 12345799999999998642 223333333333
Q ss_pred HHhhccccccEEEEccccCC
Q 000114 653 QIETTKEHIRLVGLSATLPN 672 (2158)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn 672 (2158)
.+. ..+.++|+.|...|.
T Consensus 125 ~~~--~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 125 RLI--ESGKQLILTSDRPPS 142 (219)
T ss_dssp HHH--HTTSEEEEEESS-TT
T ss_pred HHH--hhCCeEEEEeCCCCc
Confidence 322 235577777777664
No 448
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.19 E-value=0.16 Score=70.49 Aligned_cols=110 Identities=23% Similarity=0.217 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..||+-|.+|+.. ...+++|.|..|||||.+..--+...+..... ..-+|++|+-|+..|.++.+++.++
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v-------~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENA-------SPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-------ChhHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999863 34679999999999999887666666643211 2347999999999999999999886
Q ss_pred cccCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
++.. ...+.|+|-..| ..+.|.......+. -.+-|+|+.+
T Consensus 78 ~~~~-------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 118 (721)
T PRK11773 78 LGTS-------------------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDD 118 (721)
T ss_pred hccC-------------------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 5310 124678998886 33344321101111 1245777764
No 449
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.18 E-value=0.18 Score=62.28 Aligned_cols=61 Identities=25% Similarity=0.240 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raL 1402 (2158)
...+++.|.+.+..+...+.|++|+||||||||... -+++..+....+.. ++++|-.+.+|
T Consensus 130 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~--rivtIEd~~El 190 (319)
T PRK13894 130 RGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTE--RVFIIEDTGEI 190 (319)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCc--eEEEEcCCCcc
Confidence 345788999999988888999999999999999554 55555543212333 78888887766
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.12 E-value=0.47 Score=52.34 Aligned_cols=40 Identities=38% Similarity=0.523 Sum_probs=26.1
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
++|.||+|+|||..+...+. .+.. .++ .++|+.....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~-~~~~--~~~--~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL-NIAT--KGG--KVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH-HHHh--cCC--EEEEEECCcchHH
Confidence 68999999999987744333 2322 234 7788776554433
No 451
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.11 E-value=0.24 Score=59.82 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=80.7
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE-cCCcchh--
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL-TGETAMD-- 1432 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~l-tG~~~~~-- 1432 (2158)
.++-++|+|+||.|||..++-.+.+..... +. .++|++.--. ..+++.++-.... ++....+ +|....+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~--~vly~SlEm~-~~~l~~R~la~~s---~v~~~~i~~g~l~~~e~ 89 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG--GY--PVLYFSLEMS-EEELAARLLARLS---GVPYNKIRSGDLSDEEF 89 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SS--EEEEEESSS--HHHHHHHHHHHHH---TSTHHHHHCCGCHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc--CC--eEEEEcCCCC-HHHHHHHHHHHhh---cchhhhhhccccCHHHH
Confidence 356689999999999988866666555541 23 7888875311 1223333322222 1211111 1222211
Q ss_pred ------hhcccCCcEEE-e----CHHHHHHHHhhhhccccccceeEEEecccccccCC--C---CChHHHHHHHHHHHHh
Q 000114 1433 ------LKLLEKGQIII-S----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--G---GPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1433 ------~~~l~~~~IIV-~----TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~--~---g~~~e~~isrl~~i~~ 1496 (2158)
...+....+.| . |++.+....+.++... ..+++||||=+|.+... . ...+..+..+++.++.
T Consensus 90 ~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~--~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~ 167 (259)
T PF03796_consen 90 ERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREG--KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK 167 (259)
T ss_dssp HHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHS--TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhc--cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 11233334443 3 5556666666654432 78999999999998763 1 2234456777887776
Q ss_pred hcCCCceEEEeccC
Q 000114 1497 QVENKIRIVALSTS 1510 (2158)
Q Consensus 1497 ~~~~~~riV~lSAT 1510 (2158)
.+ ++.+|++|-.
T Consensus 168 ~~--~i~vi~~sQl 179 (259)
T PF03796_consen 168 EL--NIPVIALSQL 179 (259)
T ss_dssp HH--TSEEEEEEEB
T ss_pred Hc--CCeEEEcccc
Confidence 54 7888888764
No 452
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.08 E-value=1.5 Score=54.96 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=75.9
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l 1436 (2158)
+..+.+.||||.|||..-.=.+.+.... .....+..|=+=-.|-=|.++.+...+. +|+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~i----m~vp~-------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADI----MGVPL-------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHH----hCCce--------------
Confidence 6679999999999997643323333322 1122222333345566666666655433 34443
Q ss_pred cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHH
Q 000114 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516 (2158)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~d 1516 (2158)
.++-+|.-+...+.. +++.++|.||=+-+- +.=...++.|+.+......--..+.+|||. ..+|
T Consensus 264 ----~vv~~~~el~~ai~~------l~~~d~ILVDTaGrs-----~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~d 327 (407)
T COG1419 264 ----EVVYSPKELAEAIEA------LRDCDVILVDTAGRS-----QYDKEKIEELKELIDVSHSIEVYLVLSATT-KYED 327 (407)
T ss_pred ----EEecCHHHHHHHHHH------hhcCCEEEEeCCCCC-----ccCHHHHHHHHHHHhccccceEEEEEecCc-chHH
Confidence 445566666544433 456688888866532 222346677777766554556778899995 5666
Q ss_pred HHHHhc
Q 000114 1517 LGEWIG 1522 (2158)
Q Consensus 1517 l~~wl~ 1522 (2158)
+.+-+.
T Consensus 328 lkei~~ 333 (407)
T COG1419 328 LKEIIK 333 (407)
T ss_pred HHHHHH
Confidence 666554
No 453
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.06 E-value=0.42 Score=62.62 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=29.3
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
..+++.||+|+|||..+ .++.+.+....++. +++|+. ...+..+..
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~--~v~yi~-~~~~~~~~~ 194 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNA--KVVYVT-SEKFTNDFV 194 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCC--eEEEEE-HHHHHHHHH
Confidence 35999999999999877 44555555422233 677774 445554433
No 454
>PRK14974 cell division protein FtsY; Provisional
Probab=93.06 E-value=0.84 Score=56.82 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=62.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc--cHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP--~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
-+++++|+|+|||.+..-.+. .+... +.+++++.. .|+-+.++...+... +|+.+.. +....
T Consensus 142 vi~~~G~~GvGKTTtiakLA~-~l~~~----------g~~V~li~~Dt~R~~a~eqL~~~a~~---lgv~v~~--~~~g~ 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAY-YLKKN----------GFSVVIAAGDTFRAGAIEQLEEHAER---LGVKVIK--HKYGA 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HHHHc----------CCeEEEecCCcCcHHHHHHHHHHHHH---cCCceec--ccCCC
Confidence 478999999999976543332 23321 235666653 344454444444443 3454432 11111
Q ss_pred CHhhhccccEEEcchhH--HHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 591 TRQQIEETQIIVTTPEK--WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 591 ~~~~~~~~~IiV~TPek--ld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
.|.. ++.+... .....++||||.+++++... ..+ ..+....+...+...++.++|
T Consensus 206 -------------dp~~v~~~ai~~~-----~~~~~DvVLIDTaGr~~~~~-~lm----~eL~~i~~~~~pd~~iLVl~a 262 (336)
T PRK14974 206 -------------DPAAVAYDAIEHA-----KARGIDVVLIDTAGRMHTDA-NLM----DELKKIVRVTKPDLVIFVGDA 262 (336)
T ss_pred -------------CHHHHHHHHHHHH-----HhCCCCEEEEECCCccCCcH-HHH----HHHHHHHHhhCCceEEEeecc
Confidence 1111 1222211 11346899999999876322 112 222222233456677888999
Q ss_pred ccCC
Q 000114 669 TLPN 672 (2158)
Q Consensus 669 Tlpn 672 (2158)
|..+
T Consensus 263 ~~g~ 266 (336)
T PRK14974 263 LAGN 266 (336)
T ss_pred ccch
Confidence 8764
No 455
>PRK06921 hypothetical protein; Provisional
Probab=93.03 E-value=0.68 Score=55.99 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=29.1
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
...++++.||||+|||..+ .+|...+.. ..+ ..++|+. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~--~~g-~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMR--KKG-VPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhh--hcC-ceEEEEE-HHHHHHH
Confidence 3568999999999999777 466665554 112 2566655 3444443
No 456
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.03 E-value=0.16 Score=70.39 Aligned_cols=109 Identities=22% Similarity=0.191 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..||+-|.+|+.. ...+++|.|..|||||.+..--+...+..... +.-+|++++.|+..|.++.+++.+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v-------~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENA-------SPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-------CHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999998863 34579999999999999877666666653211 2347999999999999999999886
Q ss_pred cccCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCC-CccccccceEEeeccc
Q 000114 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~-~~~l~~v~lIIiDEaH 633 (2158)
++.. ...+.|+|-..| ..+.|.... ..+.. .+-|+|+.+
T Consensus 73 ~~~~-------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~--~f~i~d~~d 113 (715)
T TIGR01075 73 LGTS-------------------ARGMWIGTFHGLAHRLLRAHHLDAGLPQ--DFQILDSDD 113 (715)
T ss_pred hccc-------------------ccCcEEEcHHHHHHHHHHHHHHHhCCCC--CCeecCHHH
Confidence 4310 125678998886 334443211 11111 245677764
No 457
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.02 E-value=0.65 Score=59.23 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=18.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQL 536 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l 536 (2158)
.+++|+||+|+|||.++. .+++.+
T Consensus 41 ~~i~I~G~~GtGKT~l~~-~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK-YVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHH
Confidence 579999999999997764 334444
No 458
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.01 E-value=0.51 Score=58.65 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=30.2
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
...|+++.||||+|||..+ .+|.+.+.. .+. .++|+ +..+|+.+..
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~--~g~--~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLD--RGK--SVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH--CCC--eEEEE-EHHHHHHHHH
Confidence 4578999999999999876 455555554 122 55554 4455655443
No 459
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.97 E-value=0.74 Score=54.43 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHH
Q 000114 497 NRVQSRVYKSALS---SADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 497 ~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~ 529 (2158)
+.....++..+.. ...+++++||+|+|||..+.
T Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 25 NAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred cHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHH
Confidence 3444445544433 34579999999999997654
No 460
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.96 E-value=0.15 Score=58.12 Aligned_cols=47 Identities=28% Similarity=0.301 Sum_probs=33.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
++|.||+|+|||..++-.+...+..+ .+++|++.. +-..++.+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-----------~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-----------EPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-----------CcEEEEECC-CCHHHHHHHHHH
Confidence 78999999999998877666665432 368888653 445666666554
No 461
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.96 E-value=1.1 Score=56.02 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=64.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHhhcccCCcEEEEEeCCCc
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia--P~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~ 589 (2158)
..++++||||+|||..+.......... +.++.++. |.|.-+.++...+.+. .|+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~-----------GkkVglI~aDt~RiaAvEQLk~yae~---lgipv~------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-----------KKTVGFITTDHSRIGTVQQLQDYVKT---IGFEVI------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEEecCCcchHHHHHHHHHhhh---cCCcEE-------
Confidence 468899999999997765444433222 12344333 4454444444444432 233322
Q ss_pred cCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 590 LTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 590 ~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
.+.+|..+ +.+..... ..+.++|+||-+=+.+.. ...++ .+...+....+.-.++.+||
T Consensus 301 -----------v~~d~~~L~~aL~~lk~----~~~~DvVLIDTaGRs~kd-~~lm~----EL~~~lk~~~PdevlLVLsA 360 (436)
T PRK11889 301 -----------AVRDEAAMTRALTYFKE----EARVDYILIDTAGKNYRA-SETVE----EMIETMGQVEPDYICLTLSA 360 (436)
T ss_pred -----------ecCCHHHHHHHHHHHHh----ccCCCEEEEeCccccCcC-HHHHH----HHHHHHhhcCCCeEEEEECC
Confidence 12355554 22222110 124789999988654322 22233 33333333334444566999
Q ss_pred ccCChHHHHHHHh
Q 000114 669 TLPNYEDVALFLR 681 (2158)
Q Consensus 669 Tlpn~~dv~~~l~ 681 (2158)
|.. ..++...+.
T Consensus 361 Ttk-~~d~~~i~~ 372 (436)
T PRK11889 361 SMK-SKDMIEIIT 372 (436)
T ss_pred ccC-hHHHHHHHH
Confidence 854 355555554
No 462
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.92 E-value=0.43 Score=56.33 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=18.3
Q ss_pred CCCcEEEEccCCCchHHHHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~i 532 (2158)
...+++++||+|+|||..+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34579999999999998775443
No 463
>CHL00181 cbbX CbbX; Provisional
Probab=92.89 E-value=0.66 Score=56.81 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.5
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~i 532 (2158)
-++++.||+|+|||.+|-...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999999886554
No 464
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.86 E-value=0.33 Score=52.65 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=57.5
Q ss_pred EEecCCCCHHHHHHHHHHHhCCC-ceEEEechhhhhccCCCce--EEEEecccccCCCCC-----------------ccc
Q 000114 798 AIHHAGMTRGDRQLVEDLFGDGH-VQVLVSTATLAWGVNLPAH--TVIIKGTQIYNPEKG-----------------AWT 857 (2158)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~-i~VLVaT~tla~GVdlP~v--~vVI~~~~~yd~~~g-----------------~~~ 857 (2158)
.++.-+....+...+++.|++.. ..||++|..++.|||+|+. +.||-...||-++.. .+.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 34455566666788899998654 3799999889999999985 334444466643321 112
Q ss_pred c----CCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 858 E----LSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 858 ~----~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
. .....+.|.+||+=|...| .|..+++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~l~ 135 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGAND-YGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCc-eEEEEEE
Confidence 1 2246788999999996544 6655554
No 465
>PRK05642 DNA replication initiation factor; Validated
Probab=92.84 E-value=0.57 Score=55.66 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=24.2
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
.+++++||+|+|||..+ .++...+.. .+. +++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl-~a~~~~~~~--~~~--~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL-QAACLRFEQ--RGE--PAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHh--CCC--cEEEeeH
Confidence 46899999999999774 344444443 123 6777653
No 466
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.81 E-value=0.67 Score=54.66 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=17.7
Q ss_pred CCCcEEEEccCCchhHHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l 1376 (2158)
...++++.||+|+|||.++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999988844
No 467
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.79 E-value=0.63 Score=55.06 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhc---CCCcEEEEccCCchhHHHHH
Q 000114 1344 PIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1344 ~iQ~q~~~~l~~---~~~nvli~ApTGSGKTl~a~ 1375 (2158)
.....++..+.. ...+++++||+|+|||..+.
T Consensus 26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHH
Confidence 334444444432 35679999999999997763
No 468
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.77 E-value=0.48 Score=56.49 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=35.5
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+..++|.||+|||||+.+...+...+.+ +. +++|++ +.+-..+..+.+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge--~~lyvs-~ee~~~~i~~~~~ 69 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---GE--PGIYVA-LEEHPVQVRRNMA 69 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---CC--cEEEEE-eeCCHHHHHHHHH
Confidence 5679999999999999887777666643 33 788887 4455556655554
No 469
>PRK04296 thymidine kinase; Provisional
Probab=92.77 E-value=0.088 Score=60.38 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=24.7
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.++++|+|+|||..++-.+.+.... +.+++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~-----------g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER-----------GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc-----------CCeEEEEec
Confidence 6889999999998776666555433 236787766
No 470
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.76 E-value=0.21 Score=68.90 Aligned_cols=86 Identities=20% Similarity=0.148 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.||+-|.+++.. ...+++|.|..|||||.+..--+...+..... ...++++|+.|+..+.++.+++.+.+
T Consensus 1 ~Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-------~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-------KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 379999998863 34579999999999999988877777754211 23479999999999999999998765
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl 608 (2158)
+.. ....+-|+|-..|
T Consensus 71 ~~~------------------~~~~v~v~TfHs~ 86 (664)
T TIGR01074 71 GKG------------------EARGLTISTFHTL 86 (664)
T ss_pred Ccc------------------ccCCeEEEeHHHH
Confidence 311 1245788998886
No 471
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.72 E-value=0.48 Score=61.09 Aligned_cols=136 Identities=13% Similarity=0.227 Sum_probs=80.4
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHH-HHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhccc-
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA-LAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE- 1437 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ra-La~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~- 1437 (2158)
.++.|..|||||.++.+.++..+....++. +++++.|+.. |-.-++..+...+... |+....-..+.+.......
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~--~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~~~~~ 80 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQ--NILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIKILNT 80 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCc--EEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEEecCC
Confidence 678899999999999888887777631334 8999999987 6666677777555443 3321111111111111212
Q ss_pred CCcEEEeCH-HHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1438 KGQIIISTP-EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1438 ~~~IIV~TP-e~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
...|++..- +....+ .....+.++.+|||..+.. ..++.++.|++. +...+.+.+|.++..
T Consensus 81 g~~i~f~g~~d~~~~i-------k~~~~~~~~~idEa~~~~~---~~~~~l~~rlr~-----~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 81 GKKFIFKGLNDKPNKL-------KSGAGIAIIWFEEASQLTF---EDIKELIPRLRE-----TGGKKFIIFSSNPES 142 (396)
T ss_pred CeEEEeecccCChhHh-------hCcceeeeehhhhhhhcCH---HHHHHHHHHhhc-----cCCccEEEEEcCcCC
Confidence 235666553 222211 1234479999999998842 367777777543 112224667777654
No 472
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.70 E-value=0.24 Score=60.06 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
-.|..+++-|...+..+.....|+|+|+.||||||. +|+.+...... .. ++|.+--|.+|
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i~~------~e-RvItiEDtaEL 212 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFIDS------DE-RVITIEDTAEL 212 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcCCC------cc-cEEEEeehhhh
Confidence 458899999999999999999999999999999995 34555443322 22 88988888777
No 473
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.61 E-value=0.66 Score=55.41 Aligned_cols=139 Identities=23% Similarity=0.310 Sum_probs=72.1
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc---ccHHHHHHHHHHHHHHhcCCCCcEEE-EEcCCcch
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA---PLEALAKERYRDWEIKFGQGLGMRVV-ELTGETAM 1431 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia---P~raLa~q~~~~~~~~f~~~~g~~v~-~ltG~~~~ 1431 (2158)
.++-++|+|++|+|||..+.-.+.+...+. +. +++|++ |..+++..... ... ++... ...|....
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~--~vly~s~E~~~~~~~~r~~~----~~~---~~~~~~~~~~~~~~ 80 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ--GK--PVLFFSLEMSKEQLLQRLLA----SES---GISLSKLRTGSLSD 80 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CC--ceEEEeCCCCHHHHHHHHHH----Hhc---CCCHHHHhcCCCCH
Confidence 456789999999999987755555544431 22 678877 33344433221 111 11110 01111111
Q ss_pred -h-------hhcccCCcEEE-----eCHHHHHHHHhhhhccccccceeEEEecccccccCCC--C---ChHHHHHHHHHH
Q 000114 1432 -D-------LKLLEKGQIII-----STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG--G---PVLEVIVSRMRY 1493 (2158)
Q Consensus 1432 -~-------~~~l~~~~IIV-----~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~--g---~~~e~~isrl~~ 1493 (2158)
. ...+....+.| .|++.+...++..... .++++||||=++.+.... . ..+..++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~---~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~ 157 (242)
T cd00984 81 EDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKE---HGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKL 157 (242)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHh---cCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 0 11122234444 2455555544443221 278999999999774321 1 223456666776
Q ss_pred HHhhcCCCceEEEeccC
Q 000114 1494 IASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1494 i~~~~~~~~riV~lSAT 1510 (2158)
++.+. ++.++++|-.
T Consensus 158 la~~~--~~~ii~~~q~ 172 (242)
T cd00984 158 LAKEL--NVPVIALSQL 172 (242)
T ss_pred HHHHh--CCeEEEeccc
Confidence 66543 5667776643
No 474
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.58 E-value=0.92 Score=58.52 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=25.2
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia 1397 (2158)
..|++|.||+|+|||.+. ..+++.+.... .....+|+-
T Consensus 55 ~~~~lI~G~~GtGKT~l~-~~v~~~l~~~~--~~~~~v~in 92 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTV-KKVFEELEEIA--VKVVYVYIN 92 (394)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHhc--CCcEEEEEE
Confidence 367999999999999876 34444444421 123667763
No 475
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.57 E-value=0.27 Score=52.33 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=14.3
Q ss_pred EEEEccCCchhHHHHHH
Q 000114 1360 VLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l 1376 (2158)
+++.||+|+|||..+..
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 68999999999987733
No 476
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.56 E-value=0.57 Score=56.71 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.1
Q ss_pred CcEEEEccCCchhHHHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSEFA 1377 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~ 1377 (2158)
.|+++.||+|+|||.++...
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47999999999999988544
No 477
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.52 E-value=0.22 Score=61.62 Aligned_cols=59 Identities=20% Similarity=0.355 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
.+++.|.+.+..++..+.|++++||||||||. ++-+++..+.... ...++++|-.+.+|
T Consensus 132 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~--------~~~rivtIEd~~El 190 (319)
T PRK13894 132 IMTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD--------PTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC--------CCceEEEEcCCCcc
Confidence 46788999999999999999999999999994 4455555442211 22378888887776
No 478
>PRK08727 hypothetical protein; Validated
Probab=92.44 E-value=0.83 Score=54.27 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=14.4
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
.++++||+|+|||-.+.
T Consensus 43 ~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 43 WLYLSGPAGTGKTHLAL 59 (233)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999996554
No 479
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.41 E-value=0.44 Score=61.46 Aligned_cols=136 Identities=13% Similarity=0.201 Sum_probs=83.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH-HHHHHHHHHHhhcccCCcEEEEEeCCCccCH
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA-LVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka-La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2158)
.+++|..|||||.++.+.++..+.... .+.+++++.|+.. |..-++..+...+..+|+....-..+....-
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEI 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEE
Confidence 678999999999999888887777641 2347999999887 7777788888777766654222222221110
Q ss_pred hhhc-cccEEEcch-hHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 593 QQIE-ETQIIVTTP-EKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 593 ~~~~-~~~IiV~TP-ekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
.... +..|++..- +..+.+. ....+.++.+|||..+.. ..++.++.|++ . +...+.+.+|.|+
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~ik-------~~~~~~~~~idEa~~~~~---~~~~~l~~rlr----~-~~~~~~i~~t~NP 140 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNKLK-------SGAGIAIIWFEEASQLTF---EDIKELIPRLR----E-TGGKKFIIFSSNP 140 (396)
T ss_pred EecCCCeEEEeecccCChhHhh-------CcceeeeehhhhhhhcCH---HHHHHHHHHhh----c-cCCccEEEEEcCc
Confidence 1112 345666443 3322222 122368999999998743 36777776642 1 1122247888886
Q ss_pred CC
Q 000114 671 PN 672 (2158)
Q Consensus 671 pn 672 (2158)
+.
T Consensus 141 ~~ 142 (396)
T TIGR01547 141 ES 142 (396)
T ss_pred CC
Confidence 54
No 480
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.29 E-value=0.29 Score=55.86 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=31.7
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
.++|.||+|+|||..+.-.+...... +. +++|++. .+-..+..+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~---g~--~v~~~s~-e~~~~~~~~~~~ 47 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR---GE--PGLYVTL-EESPEELIENAE 47 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC---CC--cEEEEEC-CCCHHHHHHHHH
Confidence 37899999999999886655555433 33 6788864 344555555554
No 481
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.26 E-value=0.61 Score=60.32 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=28.5
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
.+++.||+|+|||..+ .++.+.+....++. +++|+.. ..+..+
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~--~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILENNPNA--KVVYVSS-EKFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHhCCCC--cEEEEEH-HHHHHH
Confidence 5889999999999887 55666665522233 7788753 344433
No 482
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.25 E-value=0.4 Score=59.00 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=17.2
Q ss_pred CcEEEEccCCchhHHHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSEFA 1377 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~ 1377 (2158)
.+.|+.+|+|+|||.+|.+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred ceeEEECCCCCCHHHHHHHH
Confidence 47999999999999988553
No 483
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=0.67 Score=58.49 Aligned_cols=134 Identities=20% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHhcCC--CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEE-cccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000114 1347 TQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI-APLEALAKERYRDWEIKFGQGLGMRVV 1423 (2158)
Q Consensus 1347 ~q~~~~l~~~~--~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~I-aP~raLa~q~~~~~~~~f~~~~g~~v~ 1423 (2158)
..+|..++.+. .|++|-||||+|||.+. .-+++.+....+.. -++|| |..-.=-.|++..+...++
T Consensus 30 ~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~-~~v~~~l~~~~~~~--~~~yINc~~~~t~~~i~~~i~~~~~-------- 98 (366)
T COG1474 30 ASFLAPALRGERPSNIIIYGPTGTGKTATV-KFVMEELEESSANV--EVVYINCLELRTPYQVLSKILNKLG-------- 98 (366)
T ss_pred HHHHHHHhcCCCCccEEEECCCCCCHhHHH-HHHHHHHHhhhccC--ceEEEeeeeCCCHHHHHHHHHHHcC--------
Q ss_pred EEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCce
Q 000114 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2158)
Q Consensus 1424 ~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~r 1503 (2158)
.+.-+---....+-+-|.........-+||+||++.|.+..+ +.++.-++.-... ...+-
T Consensus 99 ----------------~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---~~LY~L~r~~~~~-~~~v~ 158 (366)
T COG1474 99 ----------------KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---EVLYSLLRAPGEN-KVKVS 158 (366)
T ss_pred ----------------CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---hHHHHHHhhcccc-ceeEE
Q ss_pred EEEeccCC
Q 000114 1504 IVALSTSL 1511 (2158)
Q Consensus 1504 iV~lSATl 1511 (2158)
+|+.+.++
T Consensus 159 vi~i~n~~ 166 (366)
T COG1474 159 IIAVSNDD 166 (366)
T ss_pred EEEEeccH
No 484
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.16 E-value=1.7 Score=55.39 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=25.5
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcC--CCceEEEEEcc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASE--TGVMRAVYIAP 1398 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~--~~~~~~v~IaP 1398 (2158)
..+++|.||+|+|||.++ -.+++.+..... +..+.++|+..
T Consensus 40 ~~~i~I~G~~GtGKT~l~-~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT-KYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHHHHHhhccCCceEEEEEEC
Confidence 357999999999999776 444555543211 11135666553
No 485
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.15 E-value=2 Score=55.61 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEE--cccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI--APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~I--aP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
+..+++.+|||+|||....--+...... ..+. ++.+| -|.|.-+.++...|.+.+ |+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~--~V~li~~D~~r~~a~eqL~~~a~~~----~vp~~----------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-YGKK--KVALITLDTYRIGAVEQLKTYAKIM----GIPVE----------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCC--eEEEEECCccHHHHHHHHHHHHHHh----CCceE-----------
Confidence 4578999999999997764333222211 1122 44333 355655556666666433 23221
Q ss_pred cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHh-hcCCCceEEEeccCCCC
Q 000114 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS-QVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~-~~~~~~riV~lSATl~n 1513 (2158)
.+.+|+.+...++. +.+.++||||-+-....+. ..+..+..+.. .......++.+|||..
T Consensus 283 -------~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d~-----~~~~~L~~ll~~~~~~~~~~LVl~a~~~- 343 (424)
T PRK05703 283 -------VVYDPKELAKALEQ------LRDCDVILIDTAGRSQRDK-----RLIEELKALIEFSGEPIDVYLVLSATTK- 343 (424)
T ss_pred -------ccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCCH-----HHHHHHHHHHhccCCCCeEEEEEECCCC-
Confidence 22344444444433 3457999999986543211 12233333333 1122345778899864
Q ss_pred hHHHHH
Q 000114 1514 AKDLGE 1519 (2158)
Q Consensus 1514 ~~dl~~ 1519 (2158)
..++.+
T Consensus 344 ~~~l~~ 349 (424)
T PRK05703 344 YEDLKD 349 (424)
T ss_pred HHHHHH
Confidence 344443
No 486
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.13 E-value=0.71 Score=60.08 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=27.0
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
..+++.||+|+|||..+ .++.+.+....++. +++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~--~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDL--RVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhCCCC--eEEEEEH
Confidence 36999999999999877 45555555533333 7888764
No 487
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.07 E-value=0.73 Score=57.42 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHcCCC---cEEEEccCCCchHHHHHHHH
Q 000114 496 LNRVQSRVYKSALSSAD---NILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~~~---nvlv~APTGsGKT~~a~l~i 532 (2158)
+.|||...+..++..+. -+|++||.|.|||..+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A 43 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLA 43 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHH
Confidence 47888888888887643 47999999999998775443
No 488
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.04 E-value=0.76 Score=55.82 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHh---c-CCCcEEEEccCCchhHHHHHH
Q 000114 1341 HFNPIQTQVFTVLY---N-TDDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~---~-~~~nvli~ApTGSGKTl~a~l 1376 (2158)
..++.+.+++..+- . +...+++.||+|+|||..+..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45666777776653 2 344689999999999987743
No 489
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.03 E-value=0.45 Score=63.03 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=21.2
Q ss_pred HHHHHHHcCC---CcEEEEccCCCchHHHHHHHH
Q 000114 502 RVYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 502 ~~i~~~l~~~---~nvlv~APTGsGKT~~a~l~i 532 (2158)
+.+..++.++ ..+|++||.|+|||.+|.+.+
T Consensus 25 ~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 25 RALSSALERGRLHHAYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3444455443 346999999999998875443
No 490
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.02 E-value=0.3 Score=67.75 Aligned_cols=109 Identities=22% Similarity=0.156 Sum_probs=72.2
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
..+||-|.+|+.. ...+++|.|..|||||.+..--+...+... -+.. ++++|+-|+..|.++.+++.+.++..
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~Em~~Rl~~~~~~~- 81 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPY--SIMAVTFTNKAAAEMRHRIEQLLGTS- 81 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChh--HeEeeeccHHHHHHHHHHHHHHhccC-
Confidence 4699999999864 356799999999999988765555555431 1233 79999999999999988887544310
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHH-HHhhhhccccccceeEEEecccc
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDA-LSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~-l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
...+.|+|...|.. +++.......+. -.+-|+|+.+
T Consensus 82 -------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 118 (721)
T PRK11773 82 -------------------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDD 118 (721)
T ss_pred -------------------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 12477899887743 444422111111 1234677665
No 491
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.01 E-value=1.2 Score=54.34 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=70.7
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE---cCCcch
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL---TGETAM 1431 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~l---tG~~~~ 1431 (2158)
..+..++|+||||+|||..+...+.+...+ .+. +++|+.- -.-..+...++...+. +..+... .+....
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~--~vl~iS~-E~~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~~ 99 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ--HGV--RVGTISL-EEPVVRTARRLLGQYA---GKRLHLPDTVFIYTLE 99 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCc--eEEEEEc-ccCHHHHHHHHHHHHh---CCCcccCCccccccHH
Confidence 346679999999999998775444443332 122 6777753 2233444444443322 2221110 000000
Q ss_pred h----hhcc-cCCcEEEe------CHHHHHHHHhhhhccccccceeEEEecccccccCCC---C---ChHHHHHHHHHHH
Q 000114 1432 D----LKLL-EKGQIIIS------TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG---G---PVLEVIVSRMRYI 1494 (2158)
Q Consensus 1432 ~----~~~l-~~~~IIV~------TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~---g---~~~e~~isrl~~i 1494 (2158)
. ...+ ....+.+- |++.+...++.... -..+++||||.++.+.... . ..+..++..++.+
T Consensus 100 ~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~---~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~l 176 (271)
T cd01122 100 EFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAV---SHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGF 176 (271)
T ss_pred HHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHh---cCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHH
Confidence 0 0111 11223221 44444444443221 2368999999999876432 1 1234555566666
Q ss_pred HhhcCCCceEEEeccC
Q 000114 1495 ASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2158)
+.. .++.++++|-+
T Consensus 177 a~~--~~vtvll~sq~ 190 (271)
T cd01122 177 ATE--HGIHITLVSHL 190 (271)
T ss_pred HHH--hCCEEEEEecc
Confidence 553 35666666543
No 492
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.97 E-value=0.3 Score=60.24 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
.+++.|.+.+..++..+.|+||+||||||||... -+++..+.... ..-+++.+-...+|
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~--------~~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA--------PEDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC--------CCceEEEecCCccc
Confidence 4788999999999999999999999999999754 44555543211 12377877777776
No 493
>PRK05748 replicative DNA helicase; Provisional
Probab=91.96 E-value=0.65 Score=60.81 Aligned_cols=144 Identities=26% Similarity=0.278 Sum_probs=78.9
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE-EEcCCcchh-
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV-ELTGETAMD- 1432 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~-~ltG~~~~~- 1432 (2158)
..++-++|+|+||.|||..++--+.+...+ .+. .++|+ ....-..|+..++-..++.. ... ...|.....
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~--~v~~f-SlEms~~~l~~R~l~~~~~v---~~~~i~~~~l~~~e 272 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATK--TDK--NVAIF-SLEMGAESLVMRMLCAEGNI---DAQRLRTGQLTDDD 272 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCC--eEEEE-eCCCCHHHHHHHHHHHhcCC---CHHHhhcCCCCHHH
Confidence 346669999999999998775444433322 122 45555 33344455555554333321 111 112322221
Q ss_pred -------hhcccCCcEEEe-----CHHHHHHHHhhhhccccccceeEEEecccccccCCC--C----ChHHHHHHHHHHH
Q 000114 1433 -------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG--G----PVLEVIVSRMRYI 1494 (2158)
Q Consensus 1433 -------~~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~--g----~~~e~~isrl~~i 1494 (2158)
...+.+.++.|. |++.+....+++.... .++++||||=+|.+.... + ..+..+...++.+
T Consensus 273 ~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~--~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~l 350 (448)
T PRK05748 273 WPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEH--GGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKAL 350 (448)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc--CCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 113334456553 5566655555543321 268999999999885321 1 1234566667776
Q ss_pred HhhcCCCceEEEeccC
Q 000114 1495 ASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2158)
+..+ ++.+|++|-.
T Consensus 351 Ake~--~i~vi~lsQl 364 (448)
T PRK05748 351 AKEL--KVPVIALSQL 364 (448)
T ss_pred HHHh--CCeEEEeccc
Confidence 6543 6888888765
No 494
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.95 E-value=0.29 Score=53.24 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=58.1
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCc---eEEEecCc--cccccCCCc---cEEEEecceeecCCC----------------
Q 000114 1637 GYLHEGLNKTDQEVVSALFEAGKI---KVCVMSSS--MCWGVPLTA---HLVVVMGTQYYDGQE---------------- 1692 (2158)
Q Consensus 1637 ~~~H~~l~~~dR~~v~~~F~~g~i---~VLVaT~~--la~Gvdlp~---~~vVI~gt~~yd~~~---------------- 1692 (2158)
.++..+....+...+++.|++..- .||+|+.. +..|||+|+ ..|||.|.++-.+..
T Consensus 22 ~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~ 101 (142)
T smart00491 22 PVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGI 101 (142)
T ss_pred eEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCC
Confidence 344444444455788888987543 69998887 999999996 467787877643320
Q ss_pred C----cCcCCCHHHHHHhhccCCCCCCCCceEEEEE
Q 000114 1693 N----AHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2158)
Q Consensus 1693 ~----~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil 1724 (2158)
+ .+.+.....+.|.+||+-|.. +..|..+++
T Consensus 102 ~~~~~~~~~~a~~~~~Qa~GR~iR~~-~D~g~i~l~ 136 (142)
T smart00491 102 RPFDEVYLFDAMRALAQAIGRAIRHK-NDYGVVVLL 136 (142)
T ss_pred CcHHHHHHHHHHHHHHHHhCccccCc-cceEEEEEE
Confidence 0 012223567789999999976 556755554
No 495
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.94 E-value=0.34 Score=64.74 Aligned_cols=168 Identities=14% Similarity=0.180 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHhcCC-CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH-HHHHHHhcCC
Q 000114 1340 KHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY-RDWEIKFGQG 1417 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~-~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~-~~~~~~f~~~ 1417 (2158)
...+|+|.+.+.++-... +.|.++.++-+|||.+.+..+...+.. .+ + .++|+.||..++.... .++.-.+...
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-~P-~--~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-DP-G--PMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-CC-C--CEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 478999999999985533 469999999999999776655544444 23 3 6899999999998876 3444333321
Q ss_pred CCcE--EEE---EcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC---CCCChHHHHHH
Q 000114 1418 LGMR--VVE---LTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG---QGGPVLEVIVS 1489 (2158)
Q Consensus 1418 ~g~~--v~~---ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~---~~g~~~e~~is 1489 (2158)
..++ +.. -.++.+...+.+..+.+.++.-..- ....-..++++++||++.... ..|..++....
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~--------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~ 162 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP--------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEK 162 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCC--------cccccCCcCEEEEechhhccccCccCCCHHHHHHH
Confidence 1111 100 1122333345555566666542211 111234688999999998843 35788888888
Q ss_pred HHHHHHhhcCCCceEEEecc-CCCChHHHHHHhcc
Q 000114 1490 RMRYIASQVENKIRIVALST-SLANAKDLGEWIGA 1523 (2158)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSA-Tl~n~~dl~~wl~~ 1523 (2158)
|.... ....+++..|. |......+......
T Consensus 163 R~~tf----~~~~K~~~~STPt~~~~~~I~~~~~~ 193 (557)
T PF05876_consen 163 RTKTF----GSNRKILRISTPTIEGTSRIERLYEE 193 (557)
T ss_pred HHhhh----ccCcEEEEeCCCCCCCCCHHHHHHHh
Confidence 87755 22445555554 44333344444333
No 496
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.71 E-value=0.68 Score=60.29 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=21.1
Q ss_pred HHHHHHcCC---CcEEEEccCCCchHHHHHHHH
Q 000114 503 VYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 503 ~i~~~l~~~---~nvlv~APTGsGKT~~a~l~i 532 (2158)
.+..++..+ +.+|++||.|+|||.+|.+.+
T Consensus 24 ~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 24 ILRNAFTLNKIPQSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred HHHHHHHcCCCCceEEEECCCCccHHHHHHHHH
Confidence 444444443 358999999999998876543
No 497
>PRK05973 replicative DNA helicase; Provisional
Probab=91.70 E-value=0.94 Score=53.46 Aligned_cols=142 Identities=20% Similarity=0.231 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++|.. +... -+..+.-++|.|++|+|||..++-.+.+...+ +. +++|++--- =..|+.+++. .++ +
T Consensus 50 ~~~p~~-~l~G-Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge--~vlyfSlEe-s~~~i~~R~~-s~g----~ 116 (237)
T PRK05973 50 ATTPAE-ELFS-QLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GR--TGVFFTLEY-TEQDVRDRLR-ALG----A 116 (237)
T ss_pred CCCCHH-HhcC-CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CC--eEEEEEEeC-CHHHHHHHHH-HcC----C
Confidence 456622 2222 23446679999999999999886666555433 33 677875332 2455566555 332 1
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhhcC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~~~ 1499 (2158)
....+ ...-.+....+...+.+.++... -.+.++||||=+..+... ..+.+..++..++.+.+.
T Consensus 117 d~~~~----------~~~~~~d~~d~~~~~~ii~~l~~---~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~-- 181 (237)
T PRK05973 117 DRAQF----------ADLFEFDTSDAICADYIIARLAS---APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARE-- 181 (237)
T ss_pred ChHHh----------ccceEeecCCCCCHHHHHHHHHH---hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHh--
Confidence 10000 00000111101111122222221 124689999999987432 233444455556555543
Q ss_pred CCceEEEeccC
Q 000114 1500 NKIRIVALSTS 1510 (2158)
Q Consensus 1500 ~~~riV~lSAT 1510 (2158)
.++.+|++|-.
T Consensus 182 ~gitvIl~sQl 192 (237)
T PRK05973 182 RGLIIVFISQI 192 (237)
T ss_pred CCCeEEEEecC
Confidence 46677776543
No 498
>PRK06921 hypothetical protein; Provisional
Probab=91.70 E-value=0.57 Score=56.65 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=28.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
..++++.||||+|||..+. +|.+.+... .+..++|+.. .++..++
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~---------~g~~v~y~~~-~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK---------KGVPVLYFPF-VEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh---------cCceEEEEEH-HHHHHHH
Confidence 5679999999999997663 455554432 1236777653 4444443
No 499
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.62 E-value=1.2 Score=58.52 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=17.3
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~i 532 (2158)
..+|++||.|+|||.++.+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 369999999999998875543
No 500
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.59 E-value=0.68 Score=61.96 Aligned_cols=40 Identities=25% Similarity=0.518 Sum_probs=24.9
Q ss_pred ccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEc
Q 000114 621 TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2158)
Q Consensus 621 l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lS 667 (2158)
....+++||||+|.|... .. ..+++.++..+..+.+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~---A~----NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS---AF----NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH---HH----HHHHHHHHhCCCCcEEEEEe
Confidence 456789999999987531 12 23444455555667766654
Done!