Query 000114
Match_columns 2158
No_of_seqs 1225 out of 7485
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 17:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 100.0 2E-294 7E-299 3113.1 174.3 1722 418-2151 2-1724(1724)
2 4f92_B U5 small nuclear ribonu 100.0 7E-111 3E-115 1208.9 84.4 802 477-1301 906-1723(1724)
3 2va8_A SSO2462, SKI2-type heli 100.0 2.9E-80 9.8E-85 848.6 55.6 656 482-1199 15-714 (715)
4 2p6r_A Afuhel308 helicase; pro 100.0 7.8E-81 2.7E-85 851.1 47.9 653 482-1204 10-692 (702)
5 2zj8_A DNA helicase, putative 100.0 1.1E-79 3.9E-84 842.0 56.9 656 481-1198 7-704 (720)
6 2zj8_A DNA helicase, putative 100.0 5.6E-78 1.9E-82 825.3 58.6 654 1338-2038 20-704 (720)
7 2p6r_A Afuhel308 helicase; pro 100.0 4.1E-78 1.4E-82 824.3 53.7 645 1338-2044 22-692 (702)
8 2va8_A SSO2462, SKI2-type heli 100.0 2.7E-75 9.3E-80 799.3 58.6 658 1328-2039 16-714 (715)
9 3im1_A Protein SNU246, PRE-mRN 100.0 1.2E-62 4E-67 604.9 39.4 324 1823-2153 3-328 (328)
10 2q0z_X Protein Pro2281; SEC63, 100.0 3.1E-62 1E-66 603.3 39.4 323 1827-2156 11-333 (339)
11 2q0z_X Protein Pro2281; SEC63, 100.0 2.5E-53 8.7E-58 523.8 28.4 306 991-1302 10-328 (339)
12 3im1_A Protein SNU246, PRE-mRN 100.0 1.9E-52 6.4E-57 514.3 26.1 305 991-1301 6-325 (328)
13 3l9o_A ATP-dependent RNA helic 100.0 7.6E-42 2.6E-46 478.3 34.5 396 492-918 181-628 (1108)
14 3i5x_A ATP-dependent RNA helic 100.0 7.1E-41 2.4E-45 447.1 38.5 368 476-898 73-458 (563)
15 2xgj_A ATP-dependent RNA helic 100.0 3.9E-41 1.3E-45 467.3 36.8 388 492-917 84-529 (1010)
16 2db3_A ATP-dependent RNA helic 100.0 1.6E-39 5.6E-44 418.4 40.3 337 481-889 62-407 (434)
17 3sqw_A ATP-dependent RNA helic 100.0 2.3E-39 7.7E-44 432.8 39.8 382 460-897 6-406 (579)
18 2xgj_A ATP-dependent RNA helic 100.0 2.6E-39 8.8E-44 449.1 39.6 378 1339-1751 85-524 (1010)
19 3l9o_A ATP-dependent RNA helic 100.0 2.3E-39 7.9E-44 453.2 37.6 410 1339-1779 182-645 (1108)
20 4a4z_A Antiviral helicase SKI2 100.0 4.5E-39 1.5E-43 446.9 35.7 382 495-911 39-517 (997)
21 3i5x_A ATP-dependent RNA helic 100.0 4.7E-39 1.6E-43 429.5 34.5 365 1326-1738 78-459 (563)
22 3fht_A ATP-dependent RNA helic 100.0 3.7E-38 1.3E-42 404.1 38.2 342 481-890 31-380 (412)
23 2i4i_A ATP-dependent RNA helic 100.0 1.9E-38 6.6E-43 407.6 35.1 351 481-895 21-389 (417)
24 2db3_A ATP-dependent RNA helic 100.0 6E-38 2.1E-42 403.9 37.7 334 1326-1728 62-407 (434)
25 4a4z_A Antiviral helicase SKI2 100.0 2.5E-38 8.7E-43 439.3 35.5 375 1341-1747 39-514 (997)
26 2j0s_A ATP-dependent RNA helic 100.0 4.8E-38 1.6E-42 403.1 35.4 340 481-896 43-390 (410)
27 3pey_A ATP-dependent RNA helic 100.0 1.4E-37 4.8E-42 396.1 38.4 346 482-895 12-362 (395)
28 3fht_A ATP-dependent RNA helic 100.0 1.8E-37 6.1E-42 397.7 38.5 361 1310-1729 15-380 (412)
29 1s2m_A Putative ATP-dependent 100.0 3.7E-37 1.3E-41 393.4 37.7 338 482-897 28-373 (400)
30 3fmp_B ATP-dependent RNA helic 100.0 4.8E-39 1.6E-43 420.6 20.4 349 481-895 98-452 (479)
31 3fmp_B ATP-dependent RNA helic 100.0 9.5E-39 3.2E-43 417.8 21.9 366 1311-1734 83-452 (479)
32 3eiq_A Eukaryotic initiation f 100.0 1.3E-37 4.4E-42 399.5 30.0 340 481-897 46-395 (414)
33 2j0s_A ATP-dependent RNA helic 100.0 8.1E-37 2.8E-41 391.6 37.1 346 1322-1736 39-391 (410)
34 1xti_A Probable ATP-dependent 100.0 8.6E-37 2.9E-41 388.6 36.3 339 481-894 14-362 (391)
35 3pey_A ATP-dependent RNA helic 100.0 1.2E-36 4.2E-41 387.4 37.7 348 1326-1733 11-361 (395)
36 3sqw_A ATP-dependent RNA helic 100.0 8E-37 2.7E-41 408.2 37.0 364 1327-1738 28-408 (579)
37 2i4i_A ATP-dependent RNA helic 100.0 1.2E-36 4.1E-41 390.9 36.9 344 1327-1736 22-391 (417)
38 1hv8_A Putative ATP-dependent 100.0 9.9E-37 3.4E-41 384.2 34.7 335 482-896 13-352 (367)
39 1s2m_A Putative ATP-dependent 100.0 5.6E-36 1.9E-40 382.5 39.7 343 1326-1738 27-375 (400)
40 2v1x_A ATP-dependent DNA helic 100.0 8.2E-37 2.8E-41 403.9 31.8 336 483-899 29-384 (591)
41 2v1x_A ATP-dependent DNA helic 100.0 2.5E-36 8.5E-41 399.3 36.4 333 1332-1739 36-385 (591)
42 3eiq_A Eukaryotic initiation f 100.0 1.4E-36 4.8E-41 389.8 32.1 348 1322-1736 42-395 (414)
43 2z0m_A 337AA long hypothetical 100.0 6E-36 2.1E-40 372.6 34.2 324 482-896 1-329 (337)
44 1xti_A Probable ATP-dependent 100.0 1.8E-35 6.1E-40 376.5 39.0 337 1327-1732 15-361 (391)
45 2xau_A PRE-mRNA-splicing facto 100.0 6.6E-37 2.2E-41 415.6 26.5 470 482-1053 79-565 (773)
46 3fho_A ATP-dependent RNA helic 100.0 3.2E-37 1.1E-41 404.6 21.3 410 1266-1738 68-484 (508)
47 1hv8_A Putative ATP-dependent 100.0 1.5E-35 5.2E-40 373.4 35.1 335 1327-1736 13-353 (367)
48 1oyw_A RECQ helicase, ATP-depe 100.0 1.9E-35 6.4E-40 387.6 36.0 324 1338-1739 22-354 (523)
49 1fuu_A Yeast initiation factor 100.0 2.4E-37 8.1E-42 394.1 17.6 339 481-896 27-373 (394)
50 3fho_A ATP-dependent RNA helic 100.0 2.7E-37 9.4E-42 405.3 18.6 337 482-889 126-470 (508)
51 2xau_A PRE-mRNA-splicing facto 100.0 5E-35 1.7E-39 397.1 36.5 467 1326-1884 78-561 (773)
52 1oyw_A RECQ helicase, ATP-depe 100.0 2E-35 6.8E-40 387.3 30.6 330 483-900 10-354 (523)
53 1fuu_A Yeast initiation factor 100.0 2.4E-36 8.2E-41 384.8 19.5 342 1326-1735 27-373 (394)
54 2z0m_A 337AA long hypothetical 100.0 1.9E-34 6.5E-39 359.0 32.9 321 1331-1736 5-330 (337)
55 3oiy_A Reverse gyrase helicase 100.0 1.5E-34 5E-39 371.0 29.7 330 482-899 10-376 (414)
56 3oiy_A Reverse gyrase helicase 100.0 4E-33 1.4E-37 357.8 32.2 317 1339-1738 20-376 (414)
57 4a2p_A RIG-I, retinoic acid in 100.0 3.1E-33 1E-37 373.1 30.1 350 493-892 5-511 (556)
58 3tbk_A RIG-I helicase domain; 100.0 1.4E-32 4.7E-37 366.6 31.2 345 495-893 4-511 (555)
59 4a2p_A RIG-I, retinoic acid in 100.0 3.2E-32 1.1E-36 363.2 28.2 349 1339-1730 5-510 (556)
60 2ykg_A Probable ATP-dependent 100.0 5.5E-32 1.9E-36 370.6 30.3 354 491-893 9-520 (696)
61 4a2q_A RIG-I, retinoic acid in 100.0 3E-32 1E-36 376.4 25.7 346 491-892 244-752 (797)
62 3tbk_A RIG-I helicase domain; 100.0 1.7E-31 6E-36 355.9 29.3 347 1341-1731 4-510 (555)
63 4gl2_A Interferon-induced heli 100.0 4.5E-32 1.5E-36 371.7 21.8 337 495-889 7-519 (699)
64 1gm5_A RECG; helicase, replica 100.0 4.6E-32 1.6E-36 364.9 20.2 316 491-888 365-696 (780)
65 4a2q_A RIG-I, retinoic acid in 100.0 1.2E-30 4.3E-35 360.3 33.1 347 1338-1729 245-750 (797)
66 2ykg_A Probable ATP-dependent 100.0 6.8E-31 2.3E-35 359.8 29.7 350 1338-1730 10-518 (696)
67 1wp9_A ATP-dependent RNA helic 100.0 1.4E-30 4.8E-35 340.7 30.1 327 495-892 9-478 (494)
68 4a2w_A RIG-I, retinoic acid in 100.0 9.3E-31 3.2E-35 364.7 28.7 348 491-892 244-752 (936)
69 1gm5_A RECG; helicase, replica 100.0 2.7E-31 9.4E-36 357.4 22.2 317 1338-1729 366-698 (780)
70 1gku_B Reverse gyrase, TOP-RG; 100.0 1.1E-31 3.8E-36 376.5 16.9 280 491-848 54-352 (1054)
71 4ddu_A Reverse gyrase; topoiso 100.0 1E-30 3.5E-35 366.0 25.1 279 491-849 75-388 (1104)
72 4gl2_A Interferon-induced heli 100.0 9.9E-31 3.4E-35 358.3 24.1 338 1341-1728 7-519 (699)
73 2eyq_A TRCF, transcription-rep 100.0 1.5E-29 5.1E-34 356.7 36.3 309 492-889 601-922 (1151)
74 1wp9_A ATP-dependent RNA helic 100.0 2.1E-29 7.3E-34 329.4 34.6 326 1341-1729 9-476 (494)
75 1gku_B Reverse gyrase, TOP-RG; 100.0 5.2E-31 1.8E-35 369.8 18.9 274 1338-1682 55-347 (1054)
76 1tf5_A Preprotein translocase 100.0 1.1E-29 3.7E-34 333.0 28.7 351 491-918 80-586 (844)
77 4a2w_A RIG-I, retinoic acid in 100.0 8.9E-30 3E-34 354.8 28.7 348 1338-1730 245-751 (936)
78 2jlq_A Serine protease subunit 100.0 4.5E-31 1.6E-35 340.6 14.4 299 492-888 1-310 (451)
79 4ddu_A Reverse gyrase; topoiso 100.0 2E-29 6.8E-34 353.0 32.0 272 1338-1682 76-382 (1104)
80 2eyq_A TRCF, transcription-rep 100.0 6.2E-29 2.1E-33 350.4 36.5 308 1339-1728 602-922 (1151)
81 3rc3_A ATP-dependent RNA helic 100.0 4.3E-30 1.5E-34 340.8 21.9 298 511-906 155-462 (677)
82 2oca_A DAR protein, ATP-depend 100.0 1.3E-29 4.5E-34 334.0 26.4 307 493-877 111-445 (510)
83 3rc3_A ATP-dependent RNA helic 100.0 1.7E-30 5.9E-35 344.6 16.5 300 1356-1745 154-462 (677)
84 1tf5_A Preprotein translocase 100.0 1E-28 3.4E-33 323.9 27.8 355 1338-1756 81-585 (844)
85 2oca_A DAR protein, ATP-depend 100.0 9.6E-29 3.3E-33 325.8 26.6 306 1340-1715 112-444 (510)
86 2jlq_A Serine protease subunit 100.0 1.5E-29 5E-34 326.5 17.6 300 1338-1727 1-310 (451)
87 2fsf_A Preprotein translocase 100.0 3.4E-28 1.2E-32 317.6 28.8 353 492-917 72-623 (853)
88 2fwr_A DNA repair protein RAD2 100.0 4.5E-29 1.5E-33 325.7 16.6 302 494-890 92-455 (472)
89 2z83_A Helicase/nucleoside tri 100.0 2.3E-29 7.8E-34 325.2 13.6 289 505-889 15-313 (459)
90 1yks_A Genome polyprotein [con 100.0 4.1E-29 1.4E-33 320.8 15.0 271 508-886 5-296 (440)
91 2whx_A Serine protease/ntpase/ 100.0 2.1E-29 7.1E-34 334.1 12.3 298 493-887 169-476 (618)
92 1nkt_A Preprotein translocase 100.0 1.4E-27 4.8E-32 311.5 29.0 356 491-916 108-656 (922)
93 2wv9_A Flavivirin protease NS2 100.0 1.5E-29 5.1E-34 337.1 8.7 296 495-886 215-530 (673)
94 3o8b_A HCV NS3 protease/helica 100.0 7.4E-29 2.5E-33 324.3 15.0 284 500-890 221-515 (666)
95 3h1t_A Type I site-specific re 100.0 1.1E-27 3.9E-32 320.8 25.9 331 494-887 177-557 (590)
96 2fsf_A Preprotein translocase 100.0 1.1E-27 3.9E-32 312.7 23.9 356 1341-1754 74-621 (853)
97 1nkt_A Preprotein translocase 100.0 5.9E-27 2E-31 305.7 30.2 357 1338-1753 109-654 (922)
98 2fwr_A DNA repair protein RAD2 100.0 2.1E-28 7.1E-33 319.4 16.3 301 1341-1728 93-454 (472)
99 2whx_A Serine protease/ntpase/ 100.0 5E-28 1.7E-32 320.8 19.2 299 1339-1726 169-476 (618)
100 1yks_A Genome polyprotein [con 99.9 8.7E-28 3E-32 308.5 18.4 276 1355-1725 6-296 (440)
101 2v6i_A RNA helicase; membrane, 99.9 9E-28 3.1E-32 307.7 18.5 280 511-887 2-289 (431)
102 2wv9_A Flavivirin protease NS2 99.9 3.4E-28 1.2E-32 324.1 13.3 294 1341-1725 215-530 (673)
103 2z83_A Helicase/nucleoside tri 99.9 6.5E-28 2.2E-32 311.6 14.4 289 1351-1728 15-313 (459)
104 2v6i_A RNA helicase; membrane, 99.9 6.7E-27 2.3E-31 299.7 23.3 282 1357-1726 2-289 (431)
105 3h1t_A Type I site-specific re 99.9 4.1E-27 1.4E-31 315.4 21.0 329 1340-1727 177-558 (590)
106 3o8b_A HCV NS3 protease/helica 99.9 2.3E-27 7.7E-32 310.3 14.4 284 1346-1729 221-515 (666)
107 3dmq_A RNA polymerase-associat 99.9 2.8E-24 9.7E-29 299.7 29.4 324 494-890 152-616 (968)
108 3dmq_A RNA polymerase-associat 99.9 4.2E-23 1.4E-27 287.9 31.6 340 1340-1737 152-625 (968)
109 1z63_A Helicase of the SNF2/RA 99.9 5.9E-23 2E-27 269.8 29.5 324 494-891 36-455 (500)
110 1z63_A Helicase of the SNF2/RA 99.9 2.8E-23 9.7E-28 272.9 26.0 322 1340-1729 36-454 (500)
111 3ly5_A ATP-dependent RNA helic 99.9 1.1E-23 3.6E-28 252.2 19.9 227 1284-1519 6-251 (262)
112 3ly5_A ATP-dependent RNA helic 99.9 1.6E-23 5.6E-28 250.5 18.4 187 482-683 61-253 (262)
113 3fmo_B ATP-dependent RNA helic 99.9 7.3E-23 2.5E-27 249.4 22.1 195 1318-1521 90-288 (300)
114 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 3.2E-22 1.1E-26 275.8 29.6 351 495-886 271-706 (1038)
115 3fe2_A Probable ATP-dependent 99.9 6.8E-23 2.3E-27 242.5 18.6 188 481-683 35-228 (242)
116 3fmo_B ATP-dependent RNA helic 99.9 7.7E-23 2.6E-27 249.2 18.6 185 481-684 98-289 (300)
117 3jux_A Protein translocase sub 99.9 4.5E-21 1.5E-25 244.9 35.2 347 495-917 75-627 (822)
118 3ber_A Probable ATP-dependent 99.9 1E-22 3.5E-27 241.7 17.7 183 482-683 50-238 (249)
119 3iuy_A Probable ATP-dependent 99.9 2E-22 6.7E-27 236.3 19.1 193 481-688 26-224 (228)
120 3dkp_A Probable ATP-dependent 99.9 1.2E-22 4.1E-27 240.9 16.9 195 481-688 35-236 (245)
121 1q0u_A Bstdead; DEAD protein, 99.9 1.4E-22 4.9E-27 235.9 17.1 189 482-690 11-209 (219)
122 1vec_A ATP-dependent RNA helic 99.9 4E-22 1.4E-26 229.8 20.1 182 482-683 10-198 (206)
123 2oxc_A Probable ATP-dependent 99.9 4.5E-22 1.5E-26 233.6 20.1 184 482-685 31-221 (230)
124 3fe2_A Probable ATP-dependent 99.9 4.2E-22 1.4E-26 235.7 19.5 185 1327-1521 36-228 (242)
125 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 3.4E-21 1.2E-25 265.7 30.4 349 1341-1726 271-707 (1038)
126 2pl3_A Probable ATP-dependent 99.9 6.7E-22 2.3E-26 233.1 20.2 186 482-683 32-223 (236)
127 1wrb_A DJVLGB; RNA helicase, D 99.9 6.3E-22 2.2E-26 235.9 19.9 193 482-682 30-229 (253)
128 1vec_A ATP-dependent RNA helic 99.9 2.1E-21 7.1E-26 223.8 21.3 176 1327-1513 10-189 (206)
129 3dkp_A Probable ATP-dependent 99.9 8E-22 2.7E-26 233.8 17.9 189 1326-1522 35-229 (245)
130 3iuy_A Probable ATP-dependent 99.9 1.3E-21 4.3E-26 229.5 19.2 182 1327-1519 27-217 (228)
131 1qde_A EIF4A, translation init 99.9 1.6E-21 5.5E-26 227.8 19.9 180 482-682 21-206 (224)
132 1q0u_A Bstdead; DEAD protein, 99.9 2.1E-21 7.1E-26 226.1 20.3 175 1327-1513 11-193 (219)
133 2oxc_A Probable ATP-dependent 99.9 1.9E-21 6.7E-26 228.1 20.0 184 1327-1522 31-217 (230)
134 1qde_A EIF4A, translation init 99.9 2.5E-21 8.6E-26 226.2 20.0 176 1326-1513 20-198 (224)
135 3bor_A Human initiation factor 99.9 1.3E-21 4.4E-26 230.8 17.5 180 482-682 37-224 (237)
136 3ber_A Probable ATP-dependent 99.9 1.7E-21 5.8E-26 231.3 18.1 185 1326-1521 49-238 (249)
137 3jux_A Protein translocase sub 99.9 5.5E-20 1.9E-24 235.0 32.7 347 1341-1754 75-625 (822)
138 3bor_A Human initiation factor 99.9 4.2E-21 1.4E-25 226.3 19.3 181 1327-1519 37-223 (237)
139 1t6n_A Probable ATP-dependent 99.9 5.9E-21 2E-25 222.4 20.1 184 1326-1520 20-210 (220)
140 1wrb_A DJVLGB; RNA helicase, D 99.9 9.4E-21 3.2E-25 225.7 22.2 174 1338-1520 42-229 (253)
141 2gxq_A Heat resistant RNA depe 99.9 4.9E-21 1.7E-25 220.7 18.8 174 482-672 8-187 (207)
142 1z3i_X Similar to RAD54-like; 99.9 7.8E-20 2.7E-24 245.6 33.1 329 495-890 55-529 (644)
143 2pl3_A Probable ATP-dependent 99.9 7.6E-21 2.6E-25 224.0 20.4 186 1327-1521 32-223 (236)
144 1t6n_A Probable ATP-dependent 99.9 4.2E-21 1.4E-25 223.7 17.6 175 482-672 21-202 (220)
145 3mwy_W Chromo domain-containin 99.8 1.4E-19 4.8E-24 249.3 32.2 327 494-891 235-686 (800)
146 1c4o_A DNA nucleotide excision 99.8 1.9E-19 6.6E-24 241.3 32.6 118 732-894 438-555 (664)
147 2gxq_A Heat resistant RNA depe 99.8 2.1E-20 7.2E-25 215.5 18.7 184 1327-1522 8-197 (207)
148 3mwy_W Chromo domain-containin 99.8 2.5E-19 8.5E-24 246.8 28.6 325 1340-1728 235-684 (800)
149 1z3i_X Similar to RAD54-like; 99.8 1.1E-18 3.8E-23 234.4 33.6 327 1340-1728 54-528 (644)
150 1c4o_A DNA nucleotide excision 99.8 6.6E-19 2.3E-23 236.1 31.4 211 1463-1732 324-554 (664)
151 2ipc_A Preprotein translocase 99.8 1.7E-17 5.8E-22 215.8 33.8 131 491-636 76-215 (997)
152 2d7d_A Uvrabc system protein B 99.8 2.3E-17 8E-22 221.0 31.7 210 1465-1731 332-559 (661)
153 2d7d_A Uvrabc system protein B 99.8 2.5E-17 8.6E-22 220.7 31.3 122 727-893 438-560 (661)
154 2ipc_A Preprotein translocase 99.8 1.3E-16 4.4E-21 207.6 32.9 130 1338-1477 77-215 (997)
155 2vl7_A XPD; helicase, unknown 99.7 1E-16 3.5E-21 210.9 26.2 127 491-636 4-188 (540)
156 3b6e_A Interferon-induced heli 99.7 2.2E-17 7.4E-22 191.4 14.8 169 492-669 30-216 (216)
157 2hjv_A ATP-dependent RNA helic 99.7 7.5E-17 2.6E-21 178.3 18.3 144 697-897 7-150 (163)
158 2rb4_A ATP-dependent RNA helic 99.7 4.1E-17 1.4E-21 182.6 15.2 125 730-897 31-155 (175)
159 3eaq_A Heat resistant RNA depe 99.7 9.9E-17 3.4E-21 185.2 18.1 119 729-896 27-145 (212)
160 1rif_A DAR protein, DNA helica 99.7 2.3E-17 8E-22 199.6 12.8 153 495-673 113-265 (282)
161 3b6e_A Interferon-induced heli 99.7 5.1E-17 1.8E-21 188.2 14.1 167 1339-1510 31-216 (216)
162 1t5i_A C_terminal domain of A 99.7 5.9E-17 2E-21 180.7 13.3 114 729-891 27-140 (172)
163 1fuk_A Eukaryotic initiation f 99.7 1.5E-16 5.2E-21 176.2 15.5 120 729-897 26-145 (165)
164 2fz4_A DNA repair protein RAD2 99.7 2.8E-17 9.6E-22 193.1 9.7 200 427-674 25-232 (237)
165 3llm_A ATP-dependent RNA helic 99.7 2.3E-16 7.9E-21 185.4 17.2 170 1341-1524 61-230 (235)
166 1rif_A DAR protein, DNA helica 99.7 2.6E-16 8.9E-21 190.4 16.8 153 1341-1514 113-265 (282)
167 2jgn_A DBX, DDX3, ATP-dependen 99.7 1.9E-16 6.4E-21 178.6 13.7 116 732-896 45-160 (185)
168 2vl7_A XPD; helicase, unknown 99.7 1.3E-15 4.5E-20 200.4 22.3 126 1338-1477 5-188 (540)
169 2rb4_A ATP-dependent RNA helic 99.7 5.8E-16 2E-20 173.3 16.0 124 1573-1737 33-156 (175)
170 2hjv_A ATP-dependent RNA helic 99.7 7.2E-16 2.5E-20 170.4 16.5 119 1572-1737 33-151 (163)
171 3crv_A XPD/RAD3 related DNA he 99.7 5E-15 1.7E-19 195.7 27.5 343 1341-1738 3-542 (551)
172 3crv_A XPD/RAD3 related DNA he 99.7 5.4E-15 1.9E-19 195.3 27.4 127 495-637 3-187 (551)
173 3i32_A Heat resistant RNA depe 99.6 7.4E-16 2.5E-20 186.1 15.6 119 729-896 24-142 (300)
174 3llm_A ATP-dependent RNA helic 99.6 1.3E-15 4.6E-20 178.9 17.0 169 495-683 61-230 (235)
175 3eaq_A Heat resistant RNA depe 99.6 1.3E-15 4.6E-20 175.7 16.5 118 1572-1736 29-146 (212)
176 1t5i_A C_terminal domain of A 99.6 6.9E-16 2.4E-20 172.0 12.7 115 1572-1733 29-143 (172)
177 2p6n_A ATP-dependent RNA helic 99.6 1.6E-15 5.6E-20 171.7 14.9 108 733-889 54-161 (191)
178 1fuk_A Eukaryotic initiation f 99.6 1.2E-15 4.2E-20 168.9 13.4 118 1572-1736 28-145 (165)
179 2jgn_A DBX, DDX3, ATP-dependen 99.6 1.2E-15 4.3E-20 171.9 12.0 119 1572-1737 44-162 (185)
180 2p6n_A ATP-dependent RNA helic 99.6 8.5E-15 2.9E-19 165.8 14.3 109 1573-1728 53-161 (191)
181 3i32_A Heat resistant RNA depe 99.6 8.1E-15 2.8E-19 177.0 14.8 118 1572-1736 26-143 (300)
182 2yjt_D ATP-dependent RNA helic 99.3 2.3E-16 8E-21 175.6 0.0 115 732-895 29-143 (170)
183 4a15_A XPD helicase, ATP-depen 99.5 3.3E-13 1.1E-17 179.4 25.0 82 1341-1427 3-87 (620)
184 2fz4_A DNA repair protein RAD2 99.5 4.3E-14 1.5E-18 165.9 14.2 140 1340-1515 92-232 (237)
185 4a15_A XPD helicase, ATP-depen 99.5 2.4E-13 8.3E-18 180.7 22.9 82 495-586 3-87 (620)
186 2yjt_D ATP-dependent RNA helic 99.3 1.3E-15 4.4E-20 169.6 0.0 118 1572-1736 28-145 (170)
187 1z5z_A Helicase of the SNF2/RA 99.1 2E-10 6.9E-15 137.0 12.7 112 732-890 111-225 (271)
188 1z5z_A Helicase of the SNF2/RA 99.0 6.6E-10 2.3E-14 132.6 12.1 113 1572-1728 110-224 (271)
189 1w36_D RECD, exodeoxyribonucle 97.9 1.2E-05 4E-10 107.0 7.6 145 497-668 151-297 (608)
190 1w36_D RECD, exodeoxyribonucle 97.7 6.2E-05 2.1E-09 100.0 10.3 145 1343-1509 151-297 (608)
191 4b3f_X DNA-binding protein smu 97.5 0.00019 6.4E-09 96.5 11.3 69 494-573 188-256 (646)
192 3upu_A ATP-dependent DNA helic 97.4 0.00055 1.9E-08 88.1 13.0 67 1339-1409 23-93 (459)
193 3lfu_A DNA helicase II; SF1 he 97.3 0.0033 1.1E-07 84.7 19.6 82 494-585 8-91 (647)
194 4b3f_X DNA-binding protein smu 97.3 0.00029 9.9E-09 94.7 9.0 67 1340-1411 188-254 (646)
195 3upu_A ATP-dependent DNA helic 97.2 0.0011 3.8E-08 85.3 13.0 69 492-570 22-94 (459)
196 2gk6_A Regulator of nonsense t 97.1 0.00098 3.4E-08 89.0 11.4 68 1339-1411 178-245 (624)
197 2gk6_A Regulator of nonsense t 97.1 0.0011 3.7E-08 88.6 11.6 71 492-573 177-247 (624)
198 2xzl_A ATP-dependent helicase 97.1 0.0012 4.2E-08 89.9 11.8 71 492-573 357-427 (802)
199 2xzl_A ATP-dependent helicase 97.0 0.0016 5.3E-08 88.9 12.1 69 1339-1412 358-426 (802)
200 2wjy_A Regulator of nonsense t 96.9 0.0019 6.4E-08 88.0 10.6 68 1339-1411 354-421 (800)
201 2wjy_A Regulator of nonsense t 96.9 0.0025 8.5E-08 86.8 11.5 71 492-573 353-423 (800)
202 3e1s_A Exodeoxyribonuclease V, 96.9 0.0029 9.8E-08 83.2 11.7 62 1341-1408 189-250 (574)
203 3e1s_A Exodeoxyribonuclease V, 96.7 0.0055 1.9E-07 80.5 12.6 64 495-570 189-252 (574)
204 3ec2_A DNA replication protein 95.7 0.046 1.6E-06 60.4 11.6 41 490-530 9-57 (180)
205 3ec2_A DNA replication protein 95.3 0.095 3.2E-06 57.8 12.5 40 1343-1383 16-63 (180)
206 3cpe_A Terminase, DNA packagin 95.2 0.078 2.7E-06 70.2 13.3 73 495-577 163-235 (592)
207 2o0j_A Terminase, DNA packagin 95.1 0.098 3.3E-06 64.8 12.8 70 1341-1414 163-232 (385)
208 3lfu_A DNA helicase II; SF1 he 95.0 0.036 1.2E-06 74.6 9.2 93 1339-1455 7-100 (647)
209 2o0j_A Terminase, DNA packagin 94.8 0.26 8.7E-06 61.0 15.2 71 495-575 163-233 (385)
210 1wcn_A Transcription elongatio 94.6 0.041 1.4E-06 50.4 5.6 56 1977-2035 7-62 (70)
211 3te6_A Regulatory protein SIR3 94.6 0.27 9.1E-06 59.3 14.4 130 1356-1515 44-177 (318)
212 1uaa_A REP helicase, protein ( 94.4 0.035 1.2E-06 75.0 6.9 86 495-608 2-87 (673)
213 3cpe_A Terminase, DNA packagin 94.3 0.19 6.6E-06 66.4 13.4 72 1341-1416 163-234 (592)
214 1pjr_A PCRA; DNA repair, DNA r 94.3 0.051 1.8E-06 73.8 8.0 110 494-633 10-120 (724)
215 3te6_A Regulatory protein SIR3 93.6 0.37 1.3E-05 58.1 12.8 127 511-673 45-176 (318)
216 1uaa_A REP helicase, protein ( 93.4 0.084 2.9E-06 71.2 7.7 91 1341-1455 2-94 (673)
217 1pjr_A PCRA; DNA repair, DNA r 92.9 0.14 4.9E-06 69.4 8.7 110 1340-1474 10-120 (724)
218 4a1f_A DNAB helicase, replicat 92.6 0.35 1.2E-05 58.7 10.7 143 1355-1510 44-205 (338)
219 2kjq_A DNAA-related protein; s 92.5 0.14 4.8E-06 54.7 6.2 20 510-529 35-54 (149)
220 2orw_A Thymidine kinase; TMTK, 92.3 0.34 1.2E-05 53.7 9.2 38 1358-1400 4-41 (184)
221 2qby_B CDC6 homolog 3, cell di 92.2 0.34 1.2E-05 60.2 10.3 25 1357-1382 45-69 (384)
222 3bos_A Putative DNA replicatio 92.2 0.37 1.3E-05 55.3 9.9 32 499-530 38-71 (242)
223 2v1u_A Cell division control p 92.0 0.6 2.1E-05 57.8 12.1 20 511-530 44-63 (387)
224 2dr3_A UPF0273 protein PH0284; 91.9 0.38 1.3E-05 55.6 9.6 39 1355-1398 21-59 (247)
225 3u4q_A ATP-dependent helicase/ 91.8 0.14 4.8E-06 73.6 6.7 74 494-575 9-82 (1232)
226 2chg_A Replication factor C sm 91.6 0.55 1.9E-05 52.9 10.3 18 1358-1375 39-56 (226)
227 3syl_A Protein CBBX; photosynt 91.5 0.45 1.5E-05 57.2 10.0 19 1357-1375 67-85 (309)
228 2b8t_A Thymidine kinase; deoxy 91.4 0.22 7.7E-06 56.8 6.5 39 512-561 13-51 (223)
229 3bh0_A DNAB-like replicative h 91.2 0.48 1.6E-05 57.3 9.7 142 1355-1510 66-230 (315)
230 3vkw_A Replicase large subunit 91.2 0.16 5.6E-06 63.5 5.6 85 513-636 163-247 (446)
231 3u4q_A ATP-dependent helicase/ 91.2 0.18 6.3E-06 72.4 6.9 74 1340-1416 9-83 (1232)
232 2b8t_A Thymidine kinase; deoxy 91.1 0.5 1.7E-05 53.9 9.0 40 1356-1400 11-50 (223)
233 2dr3_A UPF0273 protein PH0284; 91.1 0.56 1.9E-05 54.1 9.8 51 509-571 21-71 (247)
234 1xx6_A Thymidine kinase; NESG, 91.0 0.32 1.1E-05 54.2 7.2 37 513-560 10-46 (191)
235 3h4m_A Proteasome-activating n 91.0 0.62 2.1E-05 55.2 10.3 20 510-529 50-69 (285)
236 2qby_B CDC6 homolog 3, cell di 91.0 0.48 1.6E-05 58.8 9.7 20 511-530 45-64 (384)
237 1l8q_A Chromosomal replication 91.0 1.3 4.3E-05 53.7 13.2 19 512-530 38-56 (324)
238 2orw_A Thymidine kinase; TMTK, 90.8 0.16 5.6E-06 56.3 4.5 37 513-560 5-41 (184)
239 1l8q_A Chromosomal replication 90.7 1.7 5.9E-05 52.5 14.1 36 1358-1398 38-73 (324)
240 3syl_A Protein CBBX; photosynt 90.7 0.51 1.7E-05 56.7 9.2 19 512-530 68-86 (309)
241 2q6t_A DNAB replication FORK h 90.5 0.51 1.7E-05 60.1 9.5 143 1356-1510 199-362 (444)
242 2z4s_A Chromosomal replication 90.5 1.2 4.2E-05 56.4 12.9 39 1358-1399 131-169 (440)
243 2chg_A Replication factor C sm 90.3 2 6.7E-05 48.2 13.3 29 501-529 26-56 (226)
244 2r6a_A DNAB helicase, replicat 90.3 0.47 1.6E-05 60.6 8.8 140 1356-1509 202-362 (454)
245 1sxj_A Activator 1 95 kDa subu 90.2 0.91 3.1E-05 58.9 11.6 42 623-670 148-189 (516)
246 2qz4_A Paraplegin; AAA+, SPG7, 90.2 0.61 2.1E-05 54.5 9.1 20 510-529 38-57 (262)
247 1xx6_A Thymidine kinase; NESG, 90.0 0.8 2.7E-05 50.9 9.3 38 1358-1400 9-46 (191)
248 1njg_A DNA polymerase III subu 90.0 2.9 0.0001 47.4 14.6 30 500-529 31-63 (250)
249 2v1u_A Cell division control p 89.9 1.3 4.3E-05 54.9 12.3 26 1356-1382 43-68 (387)
250 2kjq_A DNAA-related protein; s 89.9 0.18 6.1E-06 53.9 3.7 19 1356-1374 35-53 (149)
251 2z4s_A Chromosomal replication 89.8 1.9 6.6E-05 54.6 13.9 24 512-536 131-154 (440)
252 3vkw_A Replicase large subunit 89.7 0.39 1.3E-05 60.1 7.0 86 1358-1477 162-247 (446)
253 1w4r_A Thymidine kinase; type 89.6 0.66 2.3E-05 51.4 8.0 36 513-559 22-57 (195)
254 2w0m_A SSO2452; RECA, SSPF, un 89.6 1.5 5.1E-05 49.9 11.6 46 1464-1511 121-168 (235)
255 3h4m_A Proteasome-activating n 89.5 0.81 2.8E-05 54.2 9.5 21 1355-1375 49-69 (285)
256 3i4u_A ATP-dependent RNA helic 89.4 0.21 7.2E-06 58.8 4.1 78 969-1053 17-94 (270)
257 3bos_A Putative DNA replicatio 89.4 0.61 2.1E-05 53.4 8.1 20 1356-1375 51-70 (242)
258 2p65_A Hypothetical protein PF 89.4 2.6 9E-05 45.7 13.0 20 511-530 43-62 (187)
259 3vfd_A Spastin; ATPase, microt 89.3 1.6 5.5E-05 54.4 12.5 19 511-529 148-166 (389)
260 1xwi_A SKD1 protein; VPS4B, AA 89.0 1.2 4.1E-05 54.0 10.6 46 624-669 106-156 (322)
261 3vfd_A Spastin; ATPase, microt 88.9 0.69 2.4E-05 57.7 8.7 20 1357-1376 148-167 (389)
262 3eie_A Vacuolar protein sortin 88.8 0.8 2.7E-05 55.5 9.0 19 1357-1375 51-69 (322)
263 1a5t_A Delta prime, HOLB; zinc 88.8 0.99 3.4E-05 55.0 9.8 36 497-532 4-45 (334)
264 3u61_B DNA polymerase accessor 88.6 0.99 3.4E-05 54.6 9.6 29 1347-1375 35-66 (324)
265 4b4t_J 26S protease regulatory 88.6 0.89 3.1E-05 56.2 9.1 45 625-669 243-294 (405)
266 3hu3_A Transitional endoplasmi 88.5 1.6 5.4E-05 56.1 11.7 21 1355-1375 236-256 (489)
267 2p65_A Hypothetical protein PF 88.4 4.1 0.00014 44.1 13.7 19 1357-1375 43-61 (187)
268 1d2n_A N-ethylmaleimide-sensit 88.4 0.88 3E-05 53.6 8.7 18 512-529 65-82 (272)
269 2a1j_A DNA repair endonuclease 88.0 0.34 1.2E-05 43.4 3.5 54 1141-1195 3-57 (63)
270 2orv_A Thymidine kinase; TP4A 87.8 0.82 2.8E-05 52.0 7.4 38 513-561 21-58 (234)
271 3kl4_A SRP54, signal recogniti 87.8 1.7 5.7E-05 54.6 11.0 131 1358-1521 98-234 (433)
272 3hu3_A Transitional endoplasmi 87.6 1.2 4E-05 57.3 9.6 45 625-669 299-347 (489)
273 1a5t_A Delta prime, HOLB; zinc 87.4 3 0.0001 50.7 12.8 41 1342-1383 3-49 (334)
274 2zpa_A Uncharacterized protein 87.3 0.84 2.9E-05 60.0 8.2 117 495-674 175-292 (671)
275 2j9r_A Thymidine kinase; TK1, 87.0 2.3 7.8E-05 47.9 10.4 38 1359-1401 30-67 (214)
276 3bgw_A DNAB-like replicative h 86.9 1 3.5E-05 57.1 8.4 142 1355-1510 195-359 (444)
277 3u61_B DNA polymerase accessor 86.9 2.1 7.2E-05 51.7 11.0 31 499-529 33-66 (324)
278 3hgt_A HDA1 complex subunit 3; 86.8 2.4 8.3E-05 50.6 10.9 94 818-922 168-268 (328)
279 1fnn_A CDC6P, cell division co 86.7 1.3 4.6E-05 54.8 9.4 35 1359-1397 46-80 (389)
280 1njg_A DNA polymerase III subu 86.6 2.9 0.0001 47.3 11.7 17 1359-1375 47-63 (250)
281 4b4t_J 26S protease regulatory 86.6 2.6 8.9E-05 52.1 11.5 18 1357-1374 182-199 (405)
282 2kz3_A Putative uncharacterize 86.5 1.3 4.5E-05 41.8 6.8 50 1982-2034 9-58 (83)
283 1iqp_A RFCS; clamp loader, ext 86.5 1.2 4E-05 53.8 8.5 17 1359-1375 48-64 (327)
284 1xp8_A RECA protein, recombina 86.4 1.1 3.8E-05 55.1 8.2 90 1356-1477 73-165 (366)
285 1w4r_A Thymidine kinase; type 86.3 1.3 4.3E-05 49.2 7.7 38 1357-1399 20-57 (195)
286 3eie_A Vacuolar protein sortin 86.3 0.82 2.8E-05 55.5 6.9 18 512-529 52-69 (322)
287 3d8b_A Fidgetin-like protein 1 86.2 0.7 2.4E-05 56.9 6.3 20 1356-1375 116-135 (357)
288 1fnn_A CDC6P, cell division co 86.2 1.9 6.5E-05 53.3 10.4 17 513-529 46-62 (389)
289 1sxj_A Activator 1 95 kDa subu 86.1 2.7 9.4E-05 54.4 12.1 18 1358-1375 78-95 (516)
290 4b4t_L 26S protease subunit RP 86.0 1.1 3.6E-05 56.4 7.7 46 624-669 275-327 (437)
291 1jr3_A DNA polymerase III subu 85.9 3.6 0.00012 50.6 12.6 17 513-529 40-56 (373)
292 1u94_A RECA protein, recombina 85.6 0.68 2.3E-05 56.8 5.7 38 1356-1398 62-99 (356)
293 2ce7_A Cell division protein F 85.5 1.8 6E-05 55.2 9.5 46 624-669 109-161 (476)
294 1d2n_A N-ethylmaleimide-sensit 85.5 0.82 2.8E-05 53.9 6.2 19 1357-1375 64-82 (272)
295 1sxj_D Activator 1 41 kDa subu 85.5 2 6.7E-05 52.5 9.9 26 504-529 49-76 (353)
296 4b4t_K 26S protease regulatory 85.4 1.1 3.9E-05 56.0 7.6 46 624-669 266-318 (428)
297 2r6a_A DNAB helicase, replicat 85.3 1.3 4.3E-05 56.6 8.2 41 508-558 200-240 (454)
298 2cvh_A DNA repair and recombin 85.2 1.8 6.1E-05 48.8 8.7 35 1356-1398 19-53 (220)
299 1iqp_A RFCS; clamp loader, ext 85.2 2.8 9.6E-05 50.4 11.0 30 500-529 33-64 (327)
300 2qz4_A Paraplegin; AAA+, SPG7, 85.1 1.9 6.3E-05 50.2 9.0 20 1356-1375 38-57 (262)
301 3kl4_A SRP54, signal recogniti 85.1 1.9 6.4E-05 54.1 9.4 120 513-671 99-224 (433)
302 4a1f_A DNAB helicase, replicat 85.1 1.4 4.7E-05 53.6 7.9 144 508-669 43-205 (338)
303 3dm5_A SRP54, signal recogniti 85.0 2.1 7.3E-05 53.7 9.8 120 513-671 102-225 (443)
304 3b9p_A CG5977-PA, isoform A; A 85.0 2.5 8.5E-05 50.3 10.2 19 511-529 54-72 (297)
305 1z00_B DNA repair endonuclease 84.9 0.49 1.7E-05 44.9 3.0 53 1142-1195 18-71 (84)
306 3cf0_A Transitional endoplasmi 84.9 1.3 4.5E-05 53.0 7.7 21 1355-1375 47-67 (301)
307 2qp9_X Vacuolar protein sortin 84.7 2 6.9E-05 52.7 9.4 19 1357-1375 84-102 (355)
308 4b4t_I 26S protease regulatory 84.7 1.3 4.3E-05 55.1 7.4 45 625-669 277-328 (437)
309 1n0w_A DNA repair protein RAD5 84.7 2.2 7.5E-05 48.9 9.3 41 1356-1398 23-66 (243)
310 1sxj_B Activator 1 37 kDa subu 84.7 1.5 5E-05 52.8 8.1 18 1359-1376 44-61 (323)
311 1g5t_A COB(I)alamin adenosyltr 84.4 1.8 6.2E-05 48.0 7.8 43 507-560 24-66 (196)
312 3dm5_A SRP54, signal recogniti 84.3 2.6 9E-05 52.8 10.2 122 1358-1512 101-225 (443)
313 2zr9_A Protein RECA, recombina 84.3 2 6.8E-05 52.6 9.0 39 1356-1399 60-98 (349)
314 4b4t_M 26S protease regulatory 84.3 0.85 2.9E-05 57.2 5.8 46 624-669 275-327 (434)
315 2zts_A Putative uncharacterize 84.1 1.7 5.8E-05 50.1 8.0 143 1356-1509 29-180 (251)
316 3t15_A Ribulose bisphosphate c 84.0 0.69 2.3E-05 55.3 4.6 18 512-529 37-54 (293)
317 2q6t_A DNAB replication FORK h 84.0 1.6 5.6E-05 55.4 8.4 51 509-570 198-248 (444)
318 2zts_A Putative uncharacterize 83.9 3.9 0.00013 47.0 11.0 52 510-572 29-80 (251)
319 1xwi_A SKD1 protein; VPS4B, AA 83.9 1.1 3.7E-05 54.4 6.3 19 1357-1375 45-63 (322)
320 3t15_A Ribulose bisphosphate c 83.9 2.2 7.5E-05 50.9 8.9 19 1357-1375 36-54 (293)
321 3d8b_A Fidgetin-like protein 1 83.8 1.1 3.9E-05 55.0 6.6 19 511-529 117-135 (357)
322 2qby_A CDC6 homolog 1, cell di 83.6 3.2 0.00011 51.1 10.7 39 1357-1397 45-83 (386)
323 3bh0_A DNAB-like replicative h 83.6 0.9 3.1E-05 54.9 5.5 52 509-572 66-117 (315)
324 1xp8_A RECA protein, recombina 83.6 1.6 5.6E-05 53.7 7.8 42 510-562 73-114 (366)
325 2qby_A CDC6 homolog 1, cell di 83.5 2.9 9.9E-05 51.5 10.3 20 511-530 45-64 (386)
326 3b9p_A CG5977-PA, isoform A; A 83.5 1.1 3.8E-05 53.4 6.3 20 1356-1375 53-72 (297)
327 2w0m_A SSO2452; RECA, SSPF, un 83.4 6.9 0.00024 44.2 12.7 23 510-532 22-44 (235)
328 1u94_A RECA protein, recombina 83.4 1.6 5.6E-05 53.5 7.6 42 510-562 62-103 (356)
329 2a1j_A DNA repair endonuclease 83.1 0.97 3.3E-05 40.4 4.0 54 1976-2035 3-57 (63)
330 1sxj_B Activator 1 37 kDa subu 83.1 1.8 6.3E-05 51.9 8.0 28 503-530 32-61 (323)
331 1w5s_A Origin recognition comp 83.0 5.4 0.00019 49.6 12.6 20 1357-1376 50-71 (412)
332 2zpa_A Uncharacterized protein 82.9 1.3 4.3E-05 58.3 6.7 116 1341-1514 175-291 (671)
333 4b4t_H 26S protease regulatory 82.8 1.7 5.7E-05 54.6 7.4 46 624-669 303-355 (467)
334 1wcn_A Transcription elongatio 82.8 0.85 2.9E-05 41.7 3.6 55 1143-1197 8-64 (70)
335 2qp9_X Vacuolar protein sortin 82.5 1.1 3.9E-05 54.9 5.9 18 512-529 85-102 (355)
336 3hr8_A Protein RECA; alpha and 82.5 1.6 5.4E-05 53.4 7.0 41 1357-1402 61-101 (356)
337 4b4t_K 26S protease regulatory 82.3 3.8 0.00013 51.3 10.5 18 1357-1374 206-223 (428)
338 2cvh_A DNA repair and recombin 81.9 4.1 0.00014 45.8 9.9 23 511-533 20-42 (220)
339 3io5_A Recombination and repai 81.9 1.2 4.3E-05 53.0 5.5 91 1359-1477 30-124 (333)
340 3cf0_A Transitional endoplasmi 81.7 1.3 4.4E-05 53.1 5.8 20 510-529 48-67 (301)
341 1sxj_D Activator 1 41 kDa subu 81.4 2.1 7.2E-05 52.2 7.8 18 1358-1375 59-76 (353)
342 2gno_A DNA polymerase III, gam 81.2 3.4 0.00012 49.5 9.2 41 620-667 79-119 (305)
343 4b4t_L 26S protease subunit RP 81.2 4.2 0.00014 51.0 10.2 18 1357-1374 215-232 (437)
344 4b4t_M 26S protease regulatory 81.1 4 0.00014 51.2 10.0 18 1357-1374 215-232 (434)
345 2zr9_A Protein RECA, recombina 81.0 2.6 9E-05 51.5 8.2 41 510-561 60-100 (349)
346 4b4t_I 26S protease regulatory 80.6 6 0.0002 49.2 11.1 18 1357-1374 216-233 (437)
347 2orv_A Thymidine kinase; TP4A 80.4 2.3 8E-05 48.3 6.9 40 1357-1401 19-58 (234)
348 1v5w_A DMC1, meiotic recombina 80.3 2.5 8.6E-05 51.6 7.8 39 1143-1181 26-67 (343)
349 2zan_A Vacuolar protein sortin 80.2 1.7 5.7E-05 55.2 6.3 19 511-529 167-185 (444)
350 1z00_B DNA repair endonuclease 80.1 1.3 4.3E-05 42.1 3.8 53 1977-2035 18-71 (84)
351 3bgw_A DNAB-like replicative h 80.0 3.2 0.00011 52.5 8.8 143 508-669 194-359 (444)
352 3pvs_A Replication-associated 80.0 2.1 7.2E-05 54.3 7.2 18 1358-1375 51-68 (447)
353 2z43_A DNA repair and recombin 80.0 2.2 7.5E-05 51.7 7.1 135 1354-1508 104-255 (324)
354 1sxj_E Activator 1 40 kDa subu 79.6 5.5 0.00019 48.5 10.7 17 1359-1375 38-54 (354)
355 3e2i_A Thymidine kinase; Zn-bi 79.5 3.3 0.00011 46.6 7.6 38 513-561 30-67 (219)
356 2fna_A Conserved hypothetical 79.4 18 0.00062 43.6 15.3 30 1344-1375 19-48 (357)
357 3cmu_A Protein RECA, recombina 79.2 2 6.9E-05 63.0 7.3 50 1350-1404 1415-1469(2050)
358 3e2i_A Thymidine kinase; Zn-bi 79.0 6.5 0.00022 44.2 9.8 40 1357-1401 28-67 (219)
359 1sxj_C Activator 1 40 kDa subu 78.8 2.9 9.8E-05 51.0 7.7 116 1343-1508 30-147 (340)
360 3n70_A Transport activator; si 78.7 1.3 4.5E-05 46.7 3.9 23 1353-1375 20-42 (145)
361 3n70_A Transport activator; si 78.4 1.3 4.3E-05 46.8 3.7 23 507-529 20-42 (145)
362 2ce7_A Cell division protein F 78.3 5.1 0.00017 51.0 9.8 19 1357-1375 49-67 (476)
363 3co5_A Putative two-component 78.2 1.3 4.4E-05 46.7 3.7 22 507-528 23-44 (143)
364 2zan_A Vacuolar protein sortin 78.0 2.5 8.4E-05 53.7 6.9 19 1357-1375 167-185 (444)
365 3co5_A Putative two-component 77.9 1.3 4.5E-05 46.6 3.7 21 1354-1374 24-44 (143)
366 4b4t_H 26S protease regulatory 77.7 7.7 0.00026 48.7 10.9 19 1356-1374 242-260 (467)
367 3pfi_A Holliday junction ATP-d 77.2 4.7 0.00016 48.8 9.0 19 512-530 56-74 (338)
368 1sxj_E Activator 1 40 kDa subu 77.1 7.9 0.00027 47.1 11.0 17 513-529 38-54 (354)
369 3cmu_A Protein RECA, recombina 77.1 2 6.7E-05 63.2 6.1 52 504-566 1415-1471(2050)
370 1ypw_A Transitional endoplasmi 76.9 5.4 0.00019 54.5 10.2 47 624-670 298-348 (806)
371 3io5_A Recombination and repai 76.8 4.5 0.00015 48.2 8.1 44 513-565 30-73 (333)
372 2w58_A DNAI, primosome compone 76.8 3.7 0.00013 45.7 7.2 26 1358-1384 55-80 (202)
373 1w5s_A Origin recognition comp 76.7 6.3 0.00022 49.0 10.2 21 511-531 50-72 (412)
374 1cr0_A DNA primase/helicase; R 76.7 6.2 0.00021 46.8 9.6 48 1461-1510 144-196 (296)
375 2px0_A Flagellar biosynthesis 76.2 11 0.00038 44.7 11.6 21 511-531 105-125 (296)
376 1nlf_A Regulatory protein REPA 75.5 16 0.00056 42.8 12.7 26 508-533 27-52 (279)
377 1n0w_A DNA repair protein RAD5 75.4 4.9 0.00017 45.9 8.0 25 510-534 23-47 (243)
378 1nlf_A Regulatory protein REPA 75.3 13 0.00043 43.8 11.7 26 1354-1379 27-52 (279)
379 3cf2_A TER ATPase, transitiona 75.1 3 0.0001 56.3 6.7 47 1464-1510 297-347 (806)
380 2gno_A DNA polymerase III, gam 75.1 8.4 0.00029 46.0 10.1 18 1359-1376 20-37 (305)
381 3lda_A DNA repair protein RAD5 74.3 9 0.00031 47.6 10.4 132 1354-1508 175-325 (400)
382 1jr3_A DNA polymerase III subu 74.2 6.7 0.00023 48.1 9.3 23 1359-1382 40-62 (373)
383 1u9l_A Transcription elongatio 74.1 1.8 6.2E-05 39.5 2.9 55 1979-2036 8-62 (70)
384 2w58_A DNAI, primosome compone 73.9 4.8 0.00016 44.7 7.1 24 512-536 55-78 (202)
385 2dhr_A FTSH; AAA+ protein, hex 73.6 8 0.00027 49.5 9.9 46 624-669 124-176 (499)
386 3i4u_A ATP-dependent RNA helic 73.6 4.8 0.00016 47.2 7.2 75 1805-1885 17-91 (270)
387 3hr8_A Protein RECA; alpha and 72.4 5.7 0.0002 48.5 7.8 44 511-565 61-104 (356)
388 2ehv_A Hypothetical protein PH 72.3 3.1 0.00011 47.8 5.3 24 1355-1378 28-51 (251)
389 2px0_A Flagellar biosynthesis 71.6 17 0.00058 43.2 11.6 20 1357-1376 105-124 (296)
390 2oap_1 GSPE-2, type II secreti 71.1 2.9 9.9E-05 53.8 5.0 36 1339-1374 242-277 (511)
391 1q57_A DNA primase/helicase; d 70.9 8.3 0.00028 49.6 9.3 142 1356-1510 241-403 (503)
392 1b22_A DNA repair protein RAD5 70.8 1.4 4.7E-05 44.4 1.5 56 1978-2036 24-81 (114)
393 3cmw_A Protein RECA, recombina 70.4 5.4 0.00018 58.0 7.9 43 511-564 34-76 (1706)
394 2oap_1 GSPE-2, type II secreti 69.6 3.3 0.00011 53.3 5.0 35 494-528 243-277 (511)
395 3cf2_A TER ATPase, transitiona 68.9 7 0.00024 52.8 8.1 46 624-669 298-347 (806)
396 1ypw_A Transitional endoplasmi 68.5 4.9 0.00017 54.9 6.6 20 1356-1375 237-256 (806)
397 2dhr_A FTSH; AAA+ protein, hex 67.5 10 0.00035 48.6 8.9 19 1357-1375 64-82 (499)
398 1p9r_A General secretion pathw 67.3 5.3 0.00018 50.0 6.1 40 1342-1382 151-191 (418)
399 2i1q_A DNA repair and recombin 66.7 5 0.00017 48.4 5.6 55 1978-2035 4-58 (322)
400 1qvr_A CLPB protein; coiled co 66.4 11 0.00036 52.1 9.4 22 511-532 191-212 (854)
401 1vma_A Cell division protein F 65.7 22 0.00077 42.3 10.9 19 512-530 105-123 (306)
402 1qvr_A CLPB protein; coiled co 65.1 13 0.00044 51.3 9.9 22 1357-1378 191-212 (854)
403 2qgz_A Helicase loader, putati 64.2 9.1 0.00031 45.8 7.1 26 511-537 152-177 (308)
404 3cmw_A Protein RECA, recombina 63.9 7.2 0.00025 56.7 7.1 98 1348-1477 369-474 (1706)
405 1e9r_A Conjugal transfer prote 63.5 5.6 0.00019 50.2 5.4 43 1357-1404 53-95 (437)
406 2qgz_A Helicase loader, putati 63.2 6.7 0.00023 47.0 5.7 26 1357-1383 152-177 (308)
407 1q57_A DNA primase/helicase; d 62.1 17 0.00059 46.6 9.7 51 509-570 240-290 (503)
408 1kft_A UVRC, excinuclease ABC 61.9 4.7 0.00016 37.6 3.2 55 1976-2034 23-77 (78)
409 2bjv_A PSP operon transcriptio 59.8 5.2 0.00018 46.6 3.9 23 1353-1375 25-47 (265)
410 1pzn_A RAD51, DNA repair and r 59.8 12 0.00041 45.7 7.2 56 1977-2035 35-90 (349)
411 2bjv_A PSP operon transcriptio 59.7 5.1 0.00017 46.7 3.8 22 507-528 25-46 (265)
412 3hgt_A HDA1 complex subunit 3; 57.9 47 0.0016 39.6 11.5 92 1657-1760 168-267 (328)
413 1z3e_B DNA-directed RNA polyme 57.5 19 0.00065 33.1 6.2 56 1977-2036 9-64 (73)
414 1jbk_A CLPB protein; beta barr 57.3 9.8 0.00034 41.1 5.4 19 511-529 43-61 (195)
415 1e9r_A Conjugal transfer prote 56.7 9.2 0.00031 48.2 5.6 43 511-564 53-95 (437)
416 3jvv_A Twitching mobility prot 55.7 9.1 0.00031 46.8 5.1 29 1355-1384 121-149 (356)
417 1jbk_A CLPB protein; beta barr 55.6 11 0.00036 40.8 5.2 25 1357-1382 43-67 (195)
418 2l8b_A Protein TRAI, DNA helic 55.1 27 0.00094 38.0 8.0 61 497-567 36-97 (189)
419 1z00_A DNA excision repair pro 54.9 13 0.00045 35.4 5.1 54 1978-2035 20-73 (89)
420 1ojl_A Transcriptional regulat 54.9 6.7 0.00023 46.9 3.7 22 1354-1375 22-43 (304)
421 1ofh_A ATP-dependent HSL prote 54.6 7.6 0.00026 46.1 4.2 19 511-529 50-68 (310)
422 1ojl_A Transcriptional regulat 54.6 6.5 0.00022 47.0 3.5 22 508-529 22-43 (304)
423 3a8t_A Adenylate isopentenyltr 54.2 5.8 0.0002 47.8 3.0 17 513-529 42-58 (339)
424 3foz_A TRNA delta(2)-isopenten 54.1 6 0.0002 47.1 3.0 17 513-529 12-28 (316)
425 1p9r_A General secretion pathw 53.9 10 0.00034 47.5 5.1 33 496-528 151-184 (418)
426 4ag6_A VIRB4 ATPase, type IV s 53.8 9.4 0.00032 47.4 5.0 41 1356-1401 34-74 (392)
427 2gza_A Type IV secretion syste 53.6 8.4 0.00029 47.3 4.4 25 504-528 168-192 (361)
428 2a1j_B DNA excision repair pro 53.3 13 0.00046 35.6 4.8 52 1979-2034 34-85 (91)
429 3exa_A TRNA delta(2)-isopenten 53.3 6.2 0.00021 47.0 3.0 17 513-529 5-21 (322)
430 1u0j_A DNA replication protein 53.0 16 0.00055 42.5 6.3 46 1332-1379 75-125 (267)
431 1ofh_A ATP-dependent HSL prote 52.8 15 0.00052 43.4 6.4 19 1357-1375 50-68 (310)
432 3idu_A Uncharacterized protein 51.9 1.9E+02 0.0064 29.5 13.3 88 2034-2140 14-102 (127)
433 3hws_A ATP-dependent CLP prote 51.7 7.2 0.00025 47.8 3.4 21 510-530 50-70 (363)
434 2ewv_A Twitching motility prot 51.5 11 0.00036 46.5 4.8 38 1355-1396 134-171 (372)
435 3hws_A ATP-dependent CLP prote 51.5 7.4 0.00025 47.8 3.4 21 1356-1376 50-70 (363)
436 2eyu_A Twitching motility prot 50.5 7.1 0.00024 45.6 2.9 21 508-528 22-42 (261)
437 2gza_A Type IV secretion syste 50.5 9.9 0.00034 46.6 4.3 24 1351-1374 169-192 (361)
438 1ls1_A Signal recognition part 50.0 57 0.002 38.5 10.7 18 1358-1375 99-116 (295)
439 1tue_A Replication protein E1; 49.9 11 0.00039 42.0 4.1 35 1347-1382 45-82 (212)
440 1x2i_A HEF helicase/nuclease; 49.7 16 0.00053 33.4 4.5 54 1978-2035 15-68 (75)
441 3k4g_A DNA-directed RNA polyme 49.7 28 0.00096 33.0 6.1 55 1978-2036 13-67 (86)
442 2ius_A DNA translocase FTSK; n 49.5 16 0.00054 46.8 6.0 42 1357-1399 167-208 (512)
443 3foz_A TRNA delta(2)-isopenten 49.4 6.8 0.00023 46.6 2.4 16 1359-1374 12-27 (316)
444 3trf_A Shikimate kinase, SK; a 49.3 6.7 0.00023 42.8 2.3 21 511-531 5-25 (185)
445 3a8t_A Adenylate isopentenyltr 49.2 7.9 0.00027 46.7 3.0 17 1358-1374 41-57 (339)
446 3lw7_A Adenylate kinase relate 49.1 6.8 0.00023 41.9 2.3 18 513-530 3-20 (179)
447 2eyu_A Twitching motility prot 49.0 7.9 0.00027 45.2 2.9 20 1355-1374 23-42 (261)
448 3exa_A TRNA delta(2)-isopenten 48.9 7 0.00024 46.6 2.4 16 1359-1374 5-20 (322)
449 2ze6_A Isopentenyl transferase 48.8 8 0.00027 44.8 3.0 17 513-529 3-19 (253)
450 2qmh_A HPR kinase/phosphorylas 48.7 8.6 0.00029 42.7 2.9 17 513-529 36-52 (205)
451 4ag6_A VIRB4 ATPase, type IV s 48.5 13 0.00044 46.1 4.9 41 510-561 34-74 (392)
452 2pt7_A CAG-ALFA; ATPase, prote 48.5 8.5 0.00029 46.6 3.2 24 504-527 164-187 (330)
453 2pt7_A CAG-ALFA; ATPase, prote 48.3 8.6 0.00029 46.5 3.2 25 1350-1374 164-188 (330)
454 3crm_A TRNA delta(2)-isopenten 48.0 8.4 0.00029 46.3 3.0 17 513-529 7-23 (323)
455 3trf_A Shikimate kinase, SK; a 47.9 7.9 0.00027 42.2 2.6 20 1357-1376 5-24 (185)
456 3vaa_A Shikimate kinase, SK; s 47.7 9.9 0.00034 42.1 3.4 21 510-530 24-44 (199)
457 1b22_A DNA repair protein RAD5 47.6 12 0.00042 37.5 3.6 55 1142-1196 23-81 (114)
458 2j9r_A Thymidine kinase; TK1, 47.6 15 0.00052 41.2 4.8 37 514-561 31-67 (214)
459 3mab_A Uncharacterized protein 47.5 13 0.00046 35.8 3.7 36 1976-2014 3-38 (93)
460 1kgd_A CASK, peripheral plasma 47.0 10 0.00036 41.2 3.4 18 512-529 6-23 (180)
461 3lw7_A Adenylate kinase relate 46.9 7.7 0.00026 41.5 2.3 18 1359-1376 3-20 (179)
462 2ze6_A Isopentenyl transferase 46.9 7.5 0.00026 45.1 2.3 17 1359-1375 3-19 (253)
463 3tau_A Guanylate kinase, GMP k 46.6 10 0.00034 42.5 3.2 20 1356-1375 7-26 (208)
464 3gqc_A DNA repair protein REV1 46.5 14 0.00047 47.2 4.8 59 1142-1201 315-374 (504)
465 1kgd_A CASK, peripheral plasma 46.4 11 0.00037 41.1 3.4 20 1357-1376 5-24 (180)
466 3nbx_X ATPase RAVA; AAA+ ATPas 46.3 9.4 0.00032 48.9 3.2 24 505-528 35-58 (500)
467 2r44_A Uncharacterized protein 46.3 10 0.00035 45.7 3.5 25 505-529 40-64 (331)
468 3jvv_A Twitching mobility prot 46.0 9.7 0.00033 46.5 3.2 21 508-528 120-140 (356)
469 3tau_A Guanylate kinase, GMP k 45.9 9.7 0.00033 42.6 3.0 19 511-529 8-26 (208)
470 3vaa_A Shikimate kinase, SK; s 45.9 11 0.00038 41.7 3.4 21 1356-1376 24-44 (199)
471 2kz3_A Putative uncharacterize 45.5 29 0.001 32.7 5.6 54 1145-1198 7-66 (83)
472 3d3q_A TRNA delta(2)-isopenten 45.3 11 0.00037 45.6 3.3 17 513-529 9-25 (340)
473 1tue_A Replication protein E1; 45.0 16 0.00053 40.9 4.3 23 513-536 60-82 (212)
474 1s5l_U Photosystem II 12 kDa e 44.9 17 0.00059 37.1 4.2 47 1978-2034 64-110 (134)
475 1ex7_A Guanylate kinase; subst 44.2 9 0.00031 42.2 2.3 16 513-528 3-18 (186)
476 2r44_A Uncharacterized protein 44.1 12 0.00041 45.1 3.6 20 1356-1375 45-64 (331)
477 1qhx_A CPT, protein (chloramph 44.1 9 0.00031 41.3 2.3 18 512-529 4-21 (178)
478 3gfk_B DNA-directed RNA polyme 44.0 24 0.00083 32.9 4.7 55 1978-2036 17-71 (79)
479 2qmh_A HPR kinase/phosphorylas 43.9 11 0.00038 41.8 2.9 18 1357-1374 34-51 (205)
480 3crm_A TRNA delta(2)-isopenten 43.5 11 0.00037 45.3 2.9 16 1359-1374 7-22 (323)
481 1qhx_A CPT, protein (chloramph 43.1 10 0.00036 40.8 2.6 18 1358-1375 4-21 (178)
482 3b85_A Phosphate starvation-in 42.9 20 0.00069 40.1 4.9 36 493-529 5-40 (208)
483 3eph_A TRNA isopentenyltransfe 42.5 13 0.00043 46.0 3.4 17 513-529 4-20 (409)
484 1lvg_A Guanylate kinase, GMP k 42.2 13 0.00044 41.3 3.2 18 512-529 5-22 (198)
485 3bqs_A Uncharacterized protein 42.1 16 0.00054 35.3 3.3 36 1976-2014 3-38 (93)
486 1kag_A SKI, shikimate kinase I 42.1 13 0.00044 39.9 3.1 19 1357-1375 4-22 (173)
487 1vq8_Y 50S ribosomal protein L 42.1 5.4 0.00018 45.7 0.0 57 1976-2035 14-70 (241)
488 1lvg_A Guanylate kinase, GMP k 41.8 13 0.00045 41.2 3.2 20 1357-1376 4-23 (198)
489 3nbx_X ATPase RAVA; AAA+ ATPas 41.8 11 0.00039 48.2 2.9 20 1355-1374 39-58 (500)
490 1lv7_A FTSH; alpha/beta domain 41.7 11 0.00037 43.7 2.5 19 1357-1375 45-63 (257)
491 1lv7_A FTSH; alpha/beta domain 41.6 11 0.00037 43.6 2.6 19 511-529 45-63 (257)
492 1kag_A SKI, shikimate kinase I 41.4 12 0.00041 40.1 2.7 18 511-528 4-21 (173)
493 3d3q_A TRNA delta(2)-isopenten 41.3 12 0.00042 45.1 3.0 16 1359-1374 9-24 (340)
494 3eph_A TRNA isopentenyltransfe 41.3 13 0.00045 45.8 3.3 16 1359-1374 4-19 (409)
495 1vma_A Cell division protein F 41.2 31 0.0011 41.1 6.4 52 1358-1414 105-158 (306)
496 2l8b_A Protein TRAI, DNA helic 41.2 32 0.0011 37.4 5.8 62 1342-1407 35-97 (189)
497 1kft_A UVRC, excinuclease ABC 41.1 12 0.0004 34.9 2.2 54 1141-1194 23-77 (78)
498 1ly1_A Polynucleotide kinase; 41.0 11 0.00037 40.7 2.3 17 513-529 4-20 (181)
499 3kb2_A SPBC2 prophage-derived 41.0 11 0.00037 40.3 2.3 18 513-530 3-20 (173)
500 2ewv_A Twitching motility prot 40.8 11 0.00039 46.3 2.7 21 508-528 133-153 (372)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-294 Score=3113.07 Aligned_cols=1722 Identities=64% Similarity=1.089 Sum_probs=1663.6
Q ss_pred CCccccccccccccccCCcccccccccCCCCCcccccCcceEEecCCCCCCCCCCCCcccccCCCChhhHhhcCCCCCCC
Q 000114 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (2158)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~ 497 (2158)
.+|++.+|||++.|+||+|+|+|+|+.+|+||.+..+++|||++||++...+...++.++++++||+|++.+|+||++||
T Consensus 2 ~~p~~~~dl~~l~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~ln 81 (1724)
T 4f92_B 2 LAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLN 81 (1724)
T ss_dssp CCCCCCCCHHHHSCTTGGGCCCCCCCCCCSCCCEEECSSEEEEEECCCCCCCCCSSCCCCBTTTSCGGGSTTCTTCSBCC
T ss_pred CCccceecHhhhccccccccccCCceeCCCCCeecccCCcceEecCCCCCCCCCCcCCccchHhcCHHHHHhcCCCCCCC
Confidence 46889999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccC
Q 000114 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (2158)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~ 577 (2158)
++|+++++.++++++|+|||||||||||++|+++|++.+.++....+....+++|+|||+|+||||+|+++.|+++++.+
T Consensus 82 ~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~ 161 (1724)
T 4f92_B 82 RIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATY 161 (1724)
T ss_dssp HHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999988766556666778999999999999999999999999999
Q ss_pred CcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhc
Q 000114 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2158)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~ 657 (2158)
|++|+.++||.+.+++....++|+|||||+||.++|++.+..++++|++|||||+|+++|+||+++|.+++|+++.....
T Consensus 162 gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~ 241 (1724)
T 4f92_B 162 GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMT 241 (1724)
T ss_dssp TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhC
Confidence 99999999999988888889999999999999999998777789999999999999999999999999999999988888
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEE
Q 000114 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (2158)
Q Consensus 658 ~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vL 737 (2158)
+.++|+||||||+||++++++||+..+..++++|+.++||+|+.++++++.......+...++..+++.+.+...++|+|
T Consensus 242 ~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~L 321 (1724)
T 4f92_B 242 QEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL 321 (1724)
T ss_dssp TCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEE
T ss_pred CCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 89999999999999999999999988778899999999999999999999998888888899999999888888889999
Q ss_pred EEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHh
Q 000114 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (2158)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~ 817 (2158)
|||+||+.|+.+|+.|.+.....+....+.+......+.+........+..|++++++||++|||||++.+|..||+.|+
T Consensus 322 VF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~ 401 (1724)
T 4f92_B 322 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 401 (1724)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999999988777777777777777777788888888999999999999999999999999999999999
Q ss_pred CCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
+|.++|||||+|||||||+|+++|||++++.||+..|++.++|+.+|+||+|||||+|+|..|.+|+++++++..+|.++
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHH
Q 000114 898 MNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAAT 977 (2158)
Q Consensus 898 l~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~ 977 (2158)
++++.||||+|...+.|+||+||++|++.+.+++++||++||+|+||.+||.+|++..++...|+.+.+++.++|++|+.
T Consensus 482 l~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~ 561 (1724)
T 4f92_B 482 LNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAAL 561 (1724)
T ss_dssp TTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777888999999999999999
Q ss_pred HHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhh
Q 000114 978 ILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD 1057 (2158)
Q Consensus 978 ~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~ 1057 (2158)
.|+++|||.+|+++|.+.+|++||+||+|||++.||+.|++.+++.+++.++|+++|.|+||+++++|++|+.+|++|.+
T Consensus 562 ~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~~ 641 (1724)
T 4f92_B 562 MLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLE 641 (1724)
T ss_dssp HHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHHH
T ss_pred HHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHccc
Q 000114 1058 RVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRM 1137 (2158)
Q Consensus 1058 ~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~ 1137 (2158)
++|+|+++++++++.|+|+|||+|||++++++|+|.+|+.||.|+|.||+||++|||..+||+..+.++++|||||++|+
T Consensus 642 ~~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~ 721 (1724)
T 4f92_B 642 RVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRM 721 (1724)
T ss_dssp HSSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCcCCCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchhHHHHHHHHhcCCcceEEEEEeeccCceEEEEE
Q 000114 1138 WSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVEL 1217 (2158)
Q Consensus 1138 w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~l 1217 (2158)
|++++||+||+++|++++++|+++|++|+++.++++.|+++++++|++|+.|++++++||++++++++||||+++++|++
T Consensus 722 w~~~~~L~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~~ 801 (1724)
T 4f92_B 722 WQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVEL 801 (1724)
T ss_dssp CTTSCGGGGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSEEEEEE
T ss_pred CCCCCceecCCCCCHHHHHHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEEEEecCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccCCCCCCcccEEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEEEEecccccCCCccc
Q 000114 1218 TITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297 (2158)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~~~ 1297 (2158)
+|+|+|.|++++||..|+|||||||++++.|||+++|.+++++.+++|.++|++|+.+|+||+|+|+++||+|+||++.+
T Consensus 802 ~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~ 881 (1724)
T 4f92_B 802 TITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQL 881 (1724)
T ss_dssp EEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEE
T ss_pred EEeeccccchhhcCCceeEEEEEEecCCCeEEEEEEEEeeeeccCCceEEEEEEECCCCCCCeEEEEEEEccccCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCcCCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHH
Q 000114 1298 PVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1298 ~i~~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l 1376 (2158)
|++|+|+++|++++++|+++|++|+|+++|+++.++++|. +|++|||+|++||+.+|++++|++|+||||||||++|++
T Consensus 882 ~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliael 961 (1724)
T 4f92_B 882 PVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEF 961 (1724)
T ss_dssp EEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHH
T ss_pred eeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHH
Confidence 9999999999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhh
Q 000114 1377 AILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456 (2158)
Q Consensus 1377 ~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~ 1456 (2158)
||++.+.+ .+++ ++|||+|+||||.|++++|+++|++..|++|+.++|+...+.+.+.+++|+|||||+|+.++|+|
T Consensus 962 ail~~l~~-~~~~--kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~ 1038 (1724)
T 4f92_B 962 AILRMLLQ-SSEG--RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRW 1038 (1724)
T ss_dssp HHHHHHHH-CTTC--CEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTT
T ss_pred HHHHHHHh-CCCC--EEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCc
Confidence 99999987 3444 89999999999999999999999988899999999999988888888999999999999999999
Q ss_pred hccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCc
Q 000114 1457 KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536 (2158)
Q Consensus 1457 ~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~r 1536 (2158)
..+..++++++||+||+|++++.+|+.+|.+++||+++..+.+.++|+|+||||++|++++++||++....+++|.+++|
T Consensus 1039 ~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~R 1118 (1724)
T 4f92_B 1039 KQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR 1118 (1724)
T ss_dssp TTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGC
T ss_pred ccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCC
Confidence 98888999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccc
Q 000114 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (2158)
Q Consensus 1537 pv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (2158)
|+|++.++.+++..+...++..+.++.+..+..+ .+++|+||||+||++|+.+|..|...+.......+ ++....+++
T Consensus 1119 PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~-~~~~~~~~l 1196 (1724)
T 4f92_B 1119 PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQR-FLHCTEKDL 1196 (1724)
T ss_dssp SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTT-TBCSCHHHH
T ss_pred CCCeEEEEEeccCCCchhhhhhhcchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhh-hhcccHHHH
Confidence 9999999999999999999999999999888877 88999999999999999999999998887776666 788888888
Q ss_pred hhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCc
Q 000114 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHT 1696 (2158)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~ 1696 (2158)
...++.+.+..|.+++..||++|||||++.+|..|+++|++|.++|||||++++||||+|++.|||+||++|+++.+++.
T Consensus 1197 ~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~ 1276 (1724)
T 4f92_B 1197 IPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYV 1276 (1724)
T ss_dssp HHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEE
T ss_pred HHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHH
Q 000114 1697 DYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTW 1776 (2158)
Q Consensus 1697 ~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~ 1776 (2158)
|+++.+|+||+|||||+|+|..|.|+++|++.++++|++++++++|+||+|+..+.+|+++||+.|++.+++|+++|++|
T Consensus 1277 ~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~ 1356 (1724)
T 4f92_B 1277 DYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTW 1356 (1724)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTT
T ss_pred CCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcC
Q 000114 1777 TFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLT 1856 (2158)
Q Consensus 1777 t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~ 1856 (2158)
||||+|+.+||+||++.+.++.+++++++++|++++..|+++|||++++++++.||++|++||+|||+|.|++.|..+++
T Consensus 1357 Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~ 1436 (1724)
T 4f92_B 1357 TFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLN 1436 (1724)
T ss_dssp SSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCC
T ss_pred hHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhHHHHHH
Q 000114 1857 PKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLL 1936 (2158)
Q Consensus 1857 ~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqAhlsR~~lp~~l~~D~~~Il~ 1936 (2158)
+.+++.++|++||.|+||.++|+|++|+..+++|++.+|++++...+.+|+.|+++||||||+|+++|.+|.+|++.|++
T Consensus 1437 ~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~~~~~~D~~~i~~ 1516 (1724)
T 4f92_B 1437 AKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILS 1516 (1724)
T ss_dssp TTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhcCCcccccccccccHHHHHHHHHhhCCCCCCccccCCHHHHHHHHHHHHHCCCcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHH
Q 000114 1937 SASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERR 2016 (2158)
Q Consensus 1937 ~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~ 2016 (2158)
++.||++||+|+|++.||+.+++++|+|+|||.||+|++++||+|||||+...+++|.++| |+|++||+++++++++
T Consensus 1517 ~~~rl~~a~~d~~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~g---i~t~~dl~~~~~~~~~ 1593 (1724)
T 4f92_B 1517 KAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG---VESVFDIMEMEDEERN 1593 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHT---CCSHHHHHSSCHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCC---CCCHHHHHhCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHhCCChHHHHHHHHHHccCCceEEEEEEeccccccCCCeEEEEEEEEEcCCCCcccCccccCCCCCCccccEEEEEEEC
Q 000114 2017 ELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDT 2096 (2158)
Q Consensus 2017 ~ll~~~~~~~~~v~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~ 2096 (2158)
.+|+++++++++|+++|++||+|+|++++.+.+.+.+|++++++|+++|+.+. .++|+||+||+.|.|+||+||||.
T Consensus 1594 ~ll~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~p~~k~e~w~~vvg~~ 1670 (1724)
T 4f92_B 1594 ALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEV---TGPVIAPLFPQKREEGWWVVIGDA 1670 (1724)
T ss_dssp TSSCCCHHHHHHHHHHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSCC---CSCCCCTTSCSCCCCCEEEEEEET
T ss_pred HHHCCChHHHHHHHHHHHhCCceEEEEEEecCccccCCCeEEEEEEEEecCCC---CCeeecCCCCCCCccCEEEEEEEC
Confidence 99999999999999999999999999999998899999999999999996532 247999999999999999999999
Q ss_pred CCCeEEEEEEeecccceEEEEEEEecCCCCceEEEEEEEeCCccccCcEEEEEEE
Q 000114 2097 KTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVD 2151 (2158)
Q Consensus 2097 ~~~~L~~~krv~~~~~~~~~l~f~~P~~~G~~~~~l~~~sDsY~G~D~~~~~~l~ 2151 (2158)
++|+|+++||+++.+...++++|.+| .+|.|+|++|+|||||+||||||+|+++
T Consensus 1671 ~~~~l~~~kr~~~~~~~~~~l~f~~p-~~g~~~~~~~~~~d~y~g~d~~~~~~~~ 1724 (1724)
T 4f92_B 1671 KSNSLISIKRLTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQEYKFSVD 1724 (1724)
T ss_dssp TTTEEEEEEEECCSSEEEEEEEEECC-SSSCEEEEEEEEESSCSSCCEEEEEEEC
T ss_pred CCCeEEEEEEEecCCCceEEEEEEeC-CCCceeEEEEEEecCccccceeEEEecC
Confidence 99999999999999988999999999 6899999999999999999999999874
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.5e-111 Score=1208.88 Aligned_cols=802 Identities=29% Similarity=0.481 Sum_probs=733.3
Q ss_pred cccCCCC-hhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEE
Q 000114 477 IKISEMP-EWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIV 554 (2158)
Q Consensus 477 ~~i~~lp-~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil 554 (2158)
.+++.|+ +.++..| .+|++|||+|+++|+.++++++|++++||||||||++|.+||++.+.+.. +.++|
T Consensus 906 lp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~---------~~kav 976 (1724)
T 4f92_B 906 LPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---------EGRCV 976 (1724)
T ss_dssp CBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---------TCCEE
T ss_pred CCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC---------CCEEE
Confidence 4667774 4455566 57999999999999999999999999999999999999999999998642 34899
Q ss_pred EEcccHHHHHHHHHHHHhhccc-CCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccc
Q 000114 555 YVAPMKALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 555 ~iaP~kaLa~q~~~~~~~~~~~-~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
||+|+||||.|+++.|.++++. +|++|+.++|+...+.+....++|+|||||+|+.++|++....++++|++||+||+|
T Consensus 977 yi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 977 YITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp EECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred EEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 9999999999999999988764 799999999998877667788999999999999999999887889999999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChh
Q 000114 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 634 ~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
++++.||+.++.++.++.+.....+.++|+|+||||++|++++++||+.. ..+.+.|.+++||+|+..++.++......
T Consensus 1057 ~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~-~~~~~~~~~~~RPvpL~~~i~~~~~~~~~ 1135 (1724)
T 4f92_B 1057 LIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCS-ATSTFNFHPNVRPVPLELHIQGFNISHTQ 1135 (1724)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCC-STTEEECCGGGCSSCEEEEEEEECCCSHH
T ss_pred hcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCC-CCCeEEeCCCCCCCCeEEEEEeccCCCch
Confidence 99999999999999999888877888999999999999999999999987 46789999999999999999999888888
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
.++..++..++..+.....++++||||+||+.|+.+|..|............++.. ..+.+........+..|++++
T Consensus 1136 ~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~d~~L~~~l 1212 (1724)
T 4f92_B 1136 TRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHC---TEKDLIPYLEKLSDSTLKETL 1212 (1724)
T ss_dssp HHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCS---CHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcc---cHHHHHHHHhhcccHHHHHHH
Confidence 88888999889888888889999999999999999999998776554444444422 334455556677889999999
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
.+||++|||||++.+|..|++.|++|.++|||||+++|||||+|+++|||.+++.||+...++.++++.+|+||+|||||
T Consensus 1213 ~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1213 LNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp HTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred hCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCC
Q 000114 874 PQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~ 953 (2158)
+|+|..|.|+++|...+..+|.+++++++|+||+|...+.+++|+||+.|++.+.+++++|++|||+|+|+.+||.+|++
T Consensus 1293 ~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l 1372 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL 1372 (1724)
T ss_dssp TTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTC
T ss_pred CCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHh
Q 000114 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLF 1033 (2158)
Q Consensus 954 ~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~ 1033 (2158)
... ....+++++.++|++++..|+++|||..++ ++.+.+|++|++||+|||+|.|++.|...+++.++..++|+++
T Consensus 1373 ~~~---~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~-~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il 1448 (1724)
T 4f92_B 1373 QGI---SHRHLSDHLSELVEQTLSDLEQSKCISIED-EMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEII 1448 (1724)
T ss_dssp SCC---SHHHHHHHHHHHHHHHHHHHHHTTSEEEET-TTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred ccc---chhhHHHHHHHHHHHHHHHHHHCCCEEEcC-CCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHh
Confidence 763 456788999999999999999999999875 4679999999999999999999999999999999999999999
Q ss_pred hCCccCCCCcCChhHHHHHHHHhhcCCCCCCCC-CCChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 000114 1034 SLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE 1112 (2158)
Q Consensus 1034 s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~-~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~e 1112 (2158)
|.++||.++++|++|+..+.+|..++|+++.+. +++|+.|+++|||||+||++++ .++.+|+..|+++|.||++|++|
T Consensus 1449 ~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~-~~~~~D~~~i~~~~~rl~~a~~d 1527 (1724)
T 4f92_B 1449 SNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVD 1527 (1724)
T ss_dssp HTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccccccHHHHHHHHHhhCCCCCCccccCCHHHHHHHHHHHHHCCCcCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987754 7899999999999999999997 68899999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcC-chhHHHHH
Q 000114 1113 IVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRF-PKMGRTLH 1190 (2158)
Q Consensus 1113 i~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 1190 (2158)
+|...||...+..+++|+|||.+++|++++||+|+|||+++++++|.++|+ ++.++.++++++++.+++. ++.+.+|+
T Consensus 1528 ~~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~ 1607 (1724)
T 4f92_B 1528 VLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVA 1607 (1724)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999974 78899999
Q ss_pred HHHhcCCcceEEEEEeecc----CceEEEEEEEecCCcccCCCCCCc------ccEEEEEEeCCCCeEeeeehhhhhccc
Q 000114 1191 KFVHQFPKLILAAHVQPIT----RTVLKVELTITPDFLWDDKVHGYV------EPFWVIVEDNDGEYILHHEYFMLKKQY 1260 (2158)
Q Consensus 1191 ~~~~~~P~~~~~~~~~p~~----~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~v~d~~~~~i~~~~~~~l~~~~ 1260 (2158)
++|++||++++++.+++.+ +..+.|.++++++...+..+|++. |.||++|+|.+++.|++++++.+++.
T Consensus 1608 ~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~k~e~w~~vvg~~~~~~l~~~kr~~~~~~- 1686 (1724)
T 4f92_B 1608 RFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK- 1686 (1724)
T ss_dssp HHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSCCCSCCCCTTSCSCCCCCEEEEEEETTTTEEEEEEEECCSSE-
T ss_pred HHHHhCCceEEEEEEecCccccCCCeEEEEEEEEecCCCCCeeecCCCCCCCccCEEEEEEECCCCeEEEEEEEecCCC-
Confidence 9999999999999998654 567888888888877777787765 45999999999999999999998773
Q ss_pred cccccEEEEEEeccCCCCCeEEEEEecccccCCCccccccc
Q 000114 1261 IEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2158)
Q Consensus 1261 ~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~~~~i~~ 1301 (2158)
...+++|++| +|++++|.++++||+|+|++.+..+.+
T Consensus 1687 --~~~~l~f~~p--~~g~~~~~~~~~~d~y~g~d~~~~~~~ 1723 (1724)
T 4f92_B 1687 --AKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQEYKFSV 1723 (1724)
T ss_dssp --EEEEEEEECC--SSSCEEEEEEEEESSCSSCCEEEEEEE
T ss_pred --ceEEEEEEeC--CCCceeEEEEEEecCccccceeEEEec
Confidence 4577899888 689999999999999999998776653
No 3
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.9e-80 Score=848.61 Aligned_cols=656 Identities=26% Similarity=0.380 Sum_probs=538.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
||+++++.| .||++|+++|.++++.++..++|++++||||||||++|.+++++.+... +.+++|++|+
T Consensus 15 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~il~i~P~ 84 (715)
T 2va8_A 15 LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGKAIYVTPL 84 (715)
T ss_dssp SCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSEEEEECSC
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----------CCeEEEEeCc
Confidence 589999988 6899999999999998777788999999999999999999999987642 2489999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
++||.|++++|+ .+..+|++|+.++|+..........++|+|+|||+|+.+.++.. .+++++++|||||+|.+.+ .
T Consensus 85 r~La~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 85 RALTNEKYLTFK-DWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRP--EWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHHG-GGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCC--GGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHH-HhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCCh--hHhhccCEEEEechhhcCCcc
Confidence 999999999994 56667999999999988776666789999999999988877743 5688999999999999988 7
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccC--------
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK-------- 710 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~-------- 710 (2158)
+|+.++.++.++. ++|+|+||||++|.++++.|++.. .+...+||+|+...+......
T Consensus 162 ~~~~l~~i~~~~~--------~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 227 (715)
T 2va8_A 162 RGPVVESVTIRAK--------RRNLLALSATISNYKQIAKWLGAE------PVATNWRPVPLIEGVIYPERKKKEYNVIF 227 (715)
T ss_dssp THHHHHHHHHHHH--------TSEEEEEESCCTTHHHHHHHHTCE------EEECCCCSSCEEEEEEEECSSTTEEEEEE
T ss_pred cchHHHHHHHhcc--------cCcEEEEcCCCCCHHHHHHHhCCC------ccCCCCCCCCceEEEEecCCcccceeeec
Confidence 9999999988773 789999999999999999999853 357788999988765422100
Q ss_pred -C-hhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh-----
Q 000114 711 -K-PLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD----- 782 (2158)
Q Consensus 711 -~-~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 782 (2158)
. ....+. .....+..+.+. ..++++||||+++++++.++..|.+..... ++. ......+.....
T Consensus 228 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~-----~~~--~~~~~~~~~~~~~i~~~ 299 (715)
T 2va8_A 228 KDNTTKKVH-GDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFV-----SLD--ENALSEILKQLDDIEEG 299 (715)
T ss_dssp TTSCEEEEE-SSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS-----CCC--HHHHHHHHHHHHTCCSS
T ss_pred Ccchhhhcc-cchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhc-----cCC--hHHHHHHHHHHHHhhhc
Confidence 0 000000 001122333332 247899999999999999999998753220 111 111111111111
Q ss_pred -ccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCC-ccccCC
Q 000114 783 -MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG-AWTELS 860 (2158)
Q Consensus 783 -~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g-~~~~~s 860 (2158)
...+..|+++++.||++|||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+++..||+..+ .+.++|
T Consensus 300 ~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s 379 (715)
T 2va8_A 300 GSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379 (715)
T ss_dssp CHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------C
T ss_pred cccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCC
Confidence 123456888899999999999999999999999999999999999999999999999999999999995432 257889
Q ss_pred HHHHHHhhcccCCCCCCCccEEEEEcCCCc-H-HHHHHhh-cCCCcccchhhH--hhHHHHHHHHHhccccChHHHHHHH
Q 000114 861 PLDIMQMLGRAGRPQYDSYGEGIIITGHSE-L-RYYLSLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWI 935 (2158)
Q Consensus 861 ~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~-~-~~y~~ll-~~~~pieS~l~~--~l~d~lnaeI~~~~i~~~~~~~~wl 935 (2158)
..+|+||+|||||+|+|..|.|++++++.+ . ..+.+++ ..+.|++|++.. .|.++++++++.|++.+.+++.+|+
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l 459 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFA 459 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHH
Confidence 999999999999999999999999998876 3 3455554 578999999986 7999999999999999999999999
Q ss_pred HhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHH
Q 000114 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015 (2158)
Q Consensus 936 ~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~ 1015 (2158)
++||+|+++.. .-+++|+..|.+.|+|..+ ++.+.+|++|++||+||++|.++++
T Consensus 460 ~~~~~~~~~~~-----------------------~~~~~al~~L~~~g~i~~~--~~~~~~t~lG~~~~~~~~~~~~~~~ 514 (715)
T 2va8_A 460 YESLLAKQLVD-----------------------VYFDRAIRWLLEHSFIKEE--GNTFALTNFGKRVADLYINPFTADI 514 (715)
T ss_dssp TTSSSCHHHHH-----------------------HHHHHHHHHHHHTTSEEEC--SSEEEECHHHHHHHHHTCCHHHHHH
T ss_pred HhhHHHhhcch-----------------------HHHHHHHHHHHHCcCEeec--CCeEeeChHHHHHHHHcCCHhHHHH
Confidence 99999876421 1278899999999999875 3668999999999999999999999
Q ss_pred HHhhcCC--CCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhc------CCCCCCCC-CCC--hhHHHHHHHHHHHcC
Q 000114 1016 YNEHLKP--TMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR------VPIPVKES-LEE--PSAKINVLLQAYISQ 1084 (2158)
Q Consensus 1016 ~~~~l~~--~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~------~~~~~~~~-~~~--~~~K~~~llq~~i~~ 1084 (2158)
|+..++. ..+..++|.++|+++||+++++|++|+.+|.+++.+ .+.|++.. +++ ++.|+++|||+|||+
T Consensus 515 ~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~ 594 (715)
T 2va8_A 515 IRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDE 594 (715)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcC
Confidence 9998877 478899999999999999999999999999998753 22344321 222 789999999999999
Q ss_pred CCCCC----Ccc-cchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHH
Q 000114 1085 LKLEG----LSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLE 1159 (2158)
Q Consensus 1085 ~~~~~----~~l-~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~ 1159 (2158)
.+++. |++ .+|+.+++++|.|+++|+++||...||..++..++.|++||++|+|++.+||+||||||+.++|+|+
T Consensus 595 ~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~ 674 (715)
T 2va8_A 595 VDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLY 674 (715)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHH
T ss_pred CCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHH
Confidence 99865 888 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-CchhhccCChHHhhhhhcCchhHHHHHH-HHhcCCcc
Q 000114 1160 KKDF-AWERYYDLSPQELGELIRFPKMGRTLHK-FVHQFPKL 1199 (2158)
Q Consensus 1160 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~P~~ 1199 (2158)
++|+ ++.++. .+++++.++++ ++.|++|++ +..++|.+
T Consensus 675 ~~g~~s~~~l~-~~~~~l~~~l~-~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 675 NNGIKELGDVV-MNPDKVKNLLG-QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp HTTCCSHHHHH-HCHHHHHHHHC-HHHHHHHHHHHHHHHC--
T ss_pred HcCCCCHHHHh-CCHHHHHHHhC-hhHHHHHHHHHHHhhccC
Confidence 9998 667777 79999999998 999999988 77778865
No 4
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7.8e-81 Score=851.14 Aligned_cols=653 Identities=25% Similarity=0.366 Sum_probs=538.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
||+++++.| .||++|+|+|+++++.++ .++|++++||||||||++|.+++++.+..+ .+++|++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~~l~i~P~ 77 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIKG-----------GKSLYVVPL 77 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHTT-----------CCEEEEESS
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----------CcEEEEeCc
Confidence 455667777 689999999999999955 567899999999999999999999987642 379999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
++||.|++++|+ .+...|++|+.++|+..........++|+|+|||+|+.+.++.. .+++++++|||||+|++.+ .
T Consensus 78 r~La~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~--~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 78 RALAGEKYESFK-KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--SWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHHT-TTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC--SGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHH-HHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcCh--hHHhhcCEEEEeeeeecCCCC
Confidence 999999999994 56677999999999987776666789999999999988887743 5688999999999999988 7
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeec-----cCCh-
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ-----VKKP- 712 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~-----~~~~- 712 (2158)
||+.++.++.++.+ ..+++|+|+||||++|.++++.|++.. .+...+||+|+...+.... ....
T Consensus 155 r~~~~~~ll~~l~~----~~~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 155 RGATLEILVTKMRR----MNKALRVIGLSATAPNVTEIAEWLDAD------YYVSDWRPVPLVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp THHHHHHHHHHHHH----HCTTCEEEEEECCCTTHHHHHHHTTCE------EEECCCCSSCEEEEEECSSEEEEEETTEE
T ss_pred cccHHHHHHHHHHh----cCcCceEEEECCCcCCHHHHHHHhCCC------cccCCCCCccceEEEeeCCeeeccCcchh
Confidence 99999999988754 356899999999999999999999853 3677889999877553211 1000
Q ss_pred -hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh
Q 000114 713 -LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2158)
Q Consensus 713 -~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (2158)
..... +...+.+.+ ..++++||||+++++++.++..|.+.... ++..+.....++ .......+..+.+
T Consensus 225 ~~~~~~-~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~------~~~~~~~~~~i~-~~~~~~~~~~l~~ 293 (702)
T 2p6r_A 225 TSRRVK-FEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAK------YVENEGLEKAIL-EENEGEMSRKLAE 293 (702)
T ss_dssp EEEECC-HHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHT------TCCCSSHHHHHH-TTCCSHHHHHHHH
T ss_pred hhhhhh-HHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHh------hcChHHHHHHHH-hhccccccHHHHH
Confidence 00000 122222222 24789999999999999999999876422 222222122221 1223334567888
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhccc
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2158)
+++.||++|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+++..|| |.+.++|..+|+||+|||
T Consensus 294 ~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd---~~~~~~s~~~~~Qr~GRa 370 (702)
T 2p6r_A 294 CVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRA 370 (702)
T ss_dssp HHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEES---SSEEECCHHHHHHHHTTB
T ss_pred HHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeC---CCCCcCCHHHHHHHhhhc
Confidence 89999999999999999999999999999999999999999999999999999999998 236788999999999999
Q ss_pred CCCCCCCccEEEEEcCCCcHHHHH-Hhh-cCCCcccchhhH--hhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcC
Q 000114 872 GRPQYDSYGEGIIITGHSELRYYL-SLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (2158)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~-~ll-~~~~pieS~l~~--~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~n 947 (2158)
||+|+|..|.|+++++..+...+. +++ ..+.|++|++.. .|.++++++++.|++.+.+++.+|+++||+|+++. .
T Consensus 371 GR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~ 449 (702)
T 2p6r_A 371 GRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-I 449 (702)
T ss_dssp SCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-C
T ss_pred CCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-H
Confidence 999999999999999998866543 454 678999999986 79999999999999999999999999999998754 1
Q ss_pred CcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCC-CCH
Q 000114 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT-MGD 1026 (2158)
Q Consensus 948 p~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~-~~~ 1026 (2158)
| ..+.+++|+..|.+.|+|..+ +.+.+|++|+++|+||++|.|+++|+..++.. .+.
T Consensus 450 ~-------------------~~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (702)
T 2p6r_A 450 S-------------------LSYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSD 507 (702)
T ss_dssp C-------------------CHHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCH
T ss_pred H-------------------HHHHHHHHHHHHHHCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCH
Confidence 1 125789999999999999875 56899999999999999999999999999886 677
Q ss_pred HHHHHHhhCCccCCCCcCChhHHHHHHHHhhc-----CCCC-CCCC-CC--ChhHHHHHHHHHHHcCCCCCC----Ccc-
Q 000114 1027 IELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-----VPIP-VKES-LE--EPSAKINVLLQAYISQLKLEG----LSL- 1092 (2158)
Q Consensus 1027 ~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~-----~~~~-~~~~-~~--~~~~K~~~llq~~i~~~~~~~----~~l- 1092 (2158)
.++|.++|+++||.++++|++| .+|.+++.+ .++| +++. ++ .++.|+++|||+|||+.+++. |++
T Consensus 508 ~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~ 586 (702)
T 2p6r_A 508 IGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIA 586 (702)
T ss_dssp HHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCC
T ss_pred HHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCc
Confidence 8999999999999999999999 778777654 2333 2211 11 188999999999999999753 776
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-CchhhccC
Q 000114 1093 TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDL 1171 (2158)
Q Consensus 1093 ~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~ 1171 (2158)
.+|+.+++++|.||++|+++||...||. .+++|++||.+|+|++.+||+|+|||+++++++|+++|+ ++.++.++
T Consensus 587 ~gdl~~i~~~a~~l~~a~~~i~~~~g~~----~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~ 662 (702)
T 2p6r_A 587 PGDLRRIVETAEWLSNAMNRIAEEVGNT----SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRH 662 (702)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC----SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhh
Confidence 6999999999999999999999999997 778899999999999999999999999999999999998 67778777
Q ss_pred ChHHhhhhhcCchhHHHHHHHHhcCCcceEEEE
Q 000114 1172 SPQELGELIRFPKMGRTLHKFVHQFPKLILAAH 1204 (2158)
Q Consensus 1172 ~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~~ 1204 (2158)
+ +++.++++ ++.|+.|++.++ +|.+++++.
T Consensus 663 ~-~~l~~ll~-~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 663 R-EKVASLIG-RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp H-HHHHHHHC-HHHHHHHHHHHH-HHC------
T ss_pred h-HHHHHHhC-hhHHHHHHHhcC-CCccCcchh
Confidence 8 99999999 999999999999 999998743
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-79 Score=842.00 Aligned_cols=656 Identities=25% Similarity=0.368 Sum_probs=538.7
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.||+++++.| .||.+|+++|.++++.++..++|++++||||||||++|.+++++.+... +.+++|++|
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~~l~i~P 76 (720)
T 2zj8_A 7 RVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----------GGKAVYIVP 76 (720)
T ss_dssp CSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----------CSEEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----------CCEEEEEcC
Confidence 3688888888 6899999999999998666678999999999999999999999888642 248999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d- 637 (2158)
+++||.|++++|+ .+..+|++|+.++|+.....+....++|+|+|||+|+.+.++.. .+++++++|||||+|++++
T Consensus 77 ~raLa~q~~~~~~-~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 77 LKALAEEKFQEFQ-DWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp SGGGHHHHHHHTG-GGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCT
T ss_pred cHHHHHHHHHHHH-HHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcCh--hhhhcCCEEEEECCcccCCC
Confidence 9999999999995 45667999999999988877777789999999999988877743 5688999999999999998
Q ss_pred CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEe-----eccCCh
Q 000114 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-----IQVKKP 712 (2158)
Q Consensus 638 ~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~-----~~~~~~ 712 (2158)
.||+.++.++.++. .++|+|+||||++|+++++.|++.. .+...+||+|+...+.. +.....
T Consensus 154 ~r~~~~~~ll~~l~-------~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~rp~~l~~~~~~~~~~~~~~~~~ 220 (720)
T 2zj8_A 154 DRGATLEVILAHML-------GKAQIIGLSATIGNPEELAEWLNAE------LIVSDWRPVKLRRGVFYQGFVTWEDGSI 220 (720)
T ss_dssp TTHHHHHHHHHHHB-------TTBEEEEEECCCSCHHHHHHHTTEE------EEECCCCSSEEEEEEEETTEEEETTSCE
T ss_pred cccHHHHHHHHHhh-------cCCeEEEEcCCcCCHHHHHHHhCCc------ccCCCCCCCcceEEEEeCCeeeccccch
Confidence 79999999988873 2799999999999999999999754 36778899998765432 111000
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhh----hccCcch
Q 000114 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----DMVKSND 788 (2158)
Q Consensus 713 ~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~ 788 (2158)
.........+.+.+ ..++++||||+|++.|+.++..|.+.... ++. ......+.... ....+..
T Consensus 221 -~~~~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~------~~~--~~~~~~~~~~~~~i~~~~~~~~ 288 (720)
T 2zj8_A 221 -DRFSSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKS------LLT--KPEIRALNELADSLEENPTNEK 288 (720)
T ss_dssp -EECSSTTHHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGG------GSC--HHHHHHHHHHHHTSCSCHHHHH
T ss_pred -hhhhHHHHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHH------hcC--hhhHHHHHHHHHHHhcccchHH
Confidence 00011112222211 24689999999999999999999876432 111 11111111111 1123445
Q ss_pred hhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhh
Q 000114 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2158)
Q Consensus 789 l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2158)
|.++++.||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++..|| .. ++.++|..+|+||+
T Consensus 289 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd-~~-g~~~~s~~~~~Qr~ 366 (720)
T 2zj8_A 289 LAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYS-DF-GMERIPIIEVHQML 366 (720)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECC-SS-SCEECCHHHHHHHH
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeec-CC-CCccCCHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999 22 36789999999999
Q ss_pred cccCCCCCCCccEEEEEcCCCcHHH-HHHhh-cCCCcccchhhH--hhHHHHHHHHHhccccChHHHHHHHHhhHHHHHh
Q 000114 869 GRAGRPQYDSYGEGIIITGHSELRY-YLSLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (2158)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~-y~~ll-~~~~pieS~l~~--~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~ 944 (2158)
|||||+|+|..|.|++++++.+... +.+++ ..+.|++|++.. .+.++++++++.|++.+.+++.+|+++||+|+++
T Consensus 367 GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~ 446 (720)
T 2zj8_A 367 GRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQR 446 (720)
T ss_dssp TTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHC
T ss_pred hhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhc
Confidence 9999999999999999999887654 44555 578899999876 7999999999999999999999999999999885
Q ss_pred hcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCC-
Q 000114 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT- 1023 (2158)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~- 1023 (2158)
.. + .++.+.+++|+..|.+.|+|..+. ++.+.+|++|++||+||++|.|+++|+..++..
T Consensus 447 ~~--------------~----~~~~~~~~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~ 507 (720)
T 2zj8_A 447 KD--------------T----YSLEEKIRNILYFLLENEFIEISL-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVV 507 (720)
T ss_dssp SC--------------C----HHHHHHHHHHHHHHHHTTSEEECT-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cc--------------h----HHHHHHHHHHHHHHHHCCCeeECC-CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 31 1 133478899999999999998332 467899999999999999999999999988774
Q ss_pred --CCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhc------CCCCCCCCCCC-------hhHHHHHHHHHHHcCCCCC
Q 000114 1024 --MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR------VPIPVKESLEE-------PSAKINVLLQAYISQLKLE 1088 (2158)
Q Consensus 1024 --~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~------~~~~~~~~~~~-------~~~K~~~llq~~i~~~~~~ 1088 (2158)
.+..++|.++|+++||+++++|++|+.+|.+++.+ .++|++.+.++ ++.|+++|||+||++.+++
T Consensus 508 ~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~ 587 (720)
T 2zj8_A 508 KDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEG 587 (720)
T ss_dssp HSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred cCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHH
Confidence 67889999999999999999999999999988633 45666654233 7899999999999999974
Q ss_pred ----CCcc-cchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC
Q 000114 1089 ----GLSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 1163 (2158)
Q Consensus 1089 ----~~~l-~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~ 1163 (2158)
+|++ .+|+.+++++|.||++|+++||...||...+..+..|++||.+|+|++.+||.|+|||++.++++|+++|+
T Consensus 588 ~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~ 667 (720)
T 2zj8_A 588 EIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGF 667 (720)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTC
T ss_pred HHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcCC
Confidence 4666 69999999999999999999999999976555555599999999999999999999999999999999998
Q ss_pred -CchhhccCChHHhhhhhcCchhHHHHH----HHHhcCCc
Q 000114 1164 -AWERYYDLSPQELGELIRFPKMGRTLH----KFVHQFPK 1198 (2158)
Q Consensus 1164 -~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~P~ 1198 (2158)
++.++.+++++++..+ +++|++++ ..+.++|.
T Consensus 668 ~s~~dl~~~~~~~l~~~---~~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 668 RSIEDISQARPEELLKI---EGIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp CSHHHHHTCCHHHHHTS---TTCCHHHHHHHHHHHC----
T ss_pred CCHHHHHhCCHHHHHHh---HhHHHHHHHHHHHhcccccc
Confidence 6888888899988877 55565444 44444554
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5.6e-78 Score=825.28 Aligned_cols=654 Identities=23% Similarity=0.331 Sum_probs=541.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
||..|+|+|.++++.++..++|++++||||||||++|++++++.+... ++ +++|++|+++|+.|++++|+ +|...
T Consensus 20 g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~--~~l~i~P~raLa~q~~~~~~-~l~~~ 94 (720)
T 2zj8_A 20 GIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GG--KAVYIVPLKALAEEKFQEFQ-DWEKI 94 (720)
T ss_dssp TCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CS--EEEEECSSGGGHHHHHHHTG-GGGGG
T ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CC--EEEEEcCcHHHHHHHHHHHH-HHHhc
Confidence 799999999999999555588899999999999999999999988752 34 99999999999999999996 66654
Q ss_pred CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHh
Q 000114 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~ 1496 (2158)
|++++.++|+...+.+.+..++|+|+|||+|+.++++ ....++++++|||||+|++++ .+|+.++.++.+++
T Consensus 95 -g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---- 167 (720)
T 2zj8_A 95 -GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML---- 167 (720)
T ss_dssp -TCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB----
T ss_pred -CCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHc--ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh----
Confidence 8899999999887776677889999999999998887 344589999999999999987 68999999888775
Q ss_pred hcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCC
Q 000114 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKP 1576 (2158)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~ 1576 (2158)
.+.|+|+||||++|++++++|++... +....||+|+...+.......+...........+..+...+.++++
T Consensus 168 ---~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (720)
T 2zj8_A 168 ---GKAQIIGLSATIGNPEELAEWLNAEL-----IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKG 239 (720)
T ss_dssp ---TTBEEEEEECCCSCHHHHHHHTTEEE-----EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCC
T ss_pred ---cCCeEEEEcCCcCCHHHHHHHhCCcc-----cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCC
Confidence 27999999999999999999998642 5667889988766532211111110001112233444444467899
Q ss_pred EEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHh----hhhHHHHHHHhcccEEEecCCCCHHHHHHHH
Q 000114 1577 ALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFID----NIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2158)
Q Consensus 1577 ~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~----~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~ 1652 (2158)
+||||+|++.|+.++..|........... ....+....+ ...+..|.+.+..||++|||+|+.++|..++
T Consensus 240 ~LVF~~sr~~~~~~a~~L~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 313 (720)
T 2zj8_A 240 ALIFVNMRRKAERVALELSKKVKSLLTKP------EIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVE 313 (720)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHGGGSCHH------HHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHHHHHhcChh------hHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 99999999999999999976532200000 0001111111 1234558888899999999999999999999
Q ss_pred HHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH-
Q 000114 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE- 1731 (2158)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~- 1731 (2158)
+.|++|.++|||||+++++|||+|++.+||.++++||+. ++.|+|..+|+||+|||||+|+|..|.|++++...+.+
T Consensus 314 ~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~--g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 314 ENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDF--GMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSS--SCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCC--CCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 999999999999999999999999999999999999943 35799999999999999999999999999999887644
Q ss_pred HHHHHhh-CCCccccchhh--HHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHH
Q 000114 1732 YYKKFLY-DAFPVESHLHH--FLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELV 1808 (2158)
Q Consensus 1732 ~~~k~l~-~~~piES~L~~--~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lv 1808 (2158)
++++++. ++.|++|++.. .+.++++++++.+++.+.+|+.+|+++||+|+|+.. +.++++.+
T Consensus 392 ~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~---------------~~~~~~~~ 456 (720)
T 2zj8_A 392 VMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKD---------------TYSLEEKI 456 (720)
T ss_dssp HHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSC---------------CHHHHHHH
T ss_pred HHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccc---------------hHHHHHHH
Confidence 4667774 79999999965 799999999999999999999999999999987531 35678999
Q ss_pred HHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCC---CCHHHHHHHHhcCccccCCCCCcchHH
Q 000114 1809 ENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPK---TRMKGLLEVLASASEYAQLPIRPGEEE 1885 (2158)
Q Consensus 1809 e~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~---~~~~~lL~ils~a~Ef~~i~vR~~E~~ 1885 (2158)
++++..|.+.|||.+++++.+.+|++|+++|+||++|.|+++|..+++.. ....++|.++|.++||.++++|++|..
T Consensus 457 ~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~ 536 (720)
T 2zj8_A 457 RNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFE 536 (720)
T ss_dssp HHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHH
T ss_pred HHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHH
Confidence 99999999999998666667999999999999999999999999988763 667899999999999999999999998
Q ss_pred HHHHHhhc------CccccCCC--C--CCC--hHHHHHHHHHHHhcCCCCCC------CchhhHHHHHHHHHHHHHHHHH
Q 000114 1886 VVRRLIHH------QRFSFENP--K--FTD--PHVKANALLQAHFSRQQVGG------NLKLDQEEVLLSASRLLQAMVD 1947 (2158)
Q Consensus 1886 ~l~~L~~~------~p~~~~~~--~--~~~--~~~K~~lLLqAhlsR~~lp~------~l~~D~~~Il~~~~rLl~a~vd 1947 (2158)
.+.++... .+.++... . +.. ++.|+++|||+|++|.+++. .+.+|+++++++|.||++||++
T Consensus 537 ~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~ 616 (720)
T 2zj8_A 537 RLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKE 616 (720)
T ss_dssp HHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHH
Confidence 88887422 12222211 0 111 78999999999999998752 2689999999999999999999
Q ss_pred HHHhcCCHHHHHHHHH-HHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHH
Q 000114 1948 VISSNGWLSLALLAME-VSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQL 2026 (2158)
Q Consensus 1948 i~~~~g~l~~~l~~m~-L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~ 2026 (2158)
||...||.. +.++|. |+|||.||+|++++||+|||||+..++++|.++| ++|+.||++++++++..+-++.++++
T Consensus 617 i~~~~g~~~-~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G---~~s~~dl~~~~~~~l~~~~~~~~~i~ 692 (720)
T 2zj8_A 617 IAKVLGAYE-IVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSG---FRSIEDISQARPEELLKIEGIGVKTV 692 (720)
T ss_dssp HHHHHTCGG-GHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTT---CCSHHHHHTCCHHHHHTSTTCCHHHH
T ss_pred HHHHcCcHH-HHHHHHHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHHhHhHHHHHH
Confidence 999999975 445565 9999999999999999999999999999999999 99999999999999998866999999
Q ss_pred HHHHHHHccCCc
Q 000114 2027 LDIARFCNRFPN 2038 (2158)
Q Consensus 2027 ~~v~~~~~~~P~ 2038 (2158)
+++..++.++|.
T Consensus 693 ~~~~~~~~~~~~ 704 (720)
T 2zj8_A 693 EAIFKFLGKNVK 704 (720)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHhcccccc
Confidence 999999999998
No 7
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.1e-78 Score=824.28 Aligned_cols=645 Identities=23% Similarity=0.357 Sum_probs=533.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
||.+|+|+|+++++.++. ++|++++||||||||++|++++++.+.. ++ +++|++|+++|+.|++++|+ ++...
T Consensus 22 g~~~l~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~~l~il~~~~~---~~--~~l~i~P~r~La~q~~~~~~-~~~~~ 94 (702)
T 2p6r_A 22 GIEELFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMAMVREAIK---GG--KSLYVVPLRALAGEKYESFK-KWEKI 94 (702)
T ss_dssp ---CCCCCCHHHHHHHTT-CSCEEEECSSHHHHHHHHHHHHHHHHHT---TC--CEEEEESSHHHHHHHHHHHT-TTTTT
T ss_pred CCCCCCHHHHHHHHHHhC-CCcEEEEcCCccHHHHHHHHHHHHHHHh---CC--cEEEEeCcHHHHHHHHHHHH-HHHhc
Confidence 689999999999999765 7789999999999999999999998765 44 89999999999999999995 67654
Q ss_pred CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHh
Q 000114 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~ 1496 (2158)
|++++.++|+.....+.+..++|+|+|||+|+.++++ ....++++++||+||+|++++ .+|+.++.++.+++..
T Consensus 95 -g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~-- 169 (702)
T 2p6r_A 95 -GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM-- 169 (702)
T ss_dssp -TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH--
T ss_pred -CCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHc--ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc--
Confidence 8999999999887766677889999999999998887 334588999999999999987 5799999999998864
Q ss_pred hcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHH----HhcChHHHHHHHHhHh
Q 000114 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM----QAMTKPTFTAIVQHAK 1572 (2158)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~----~~~~k~~~~~i~~~~~ 1572 (2158)
+++.|+|+||||++|.+++++|++... +....||+|+...+.......+.... ..+ .....+...+.
T Consensus 170 --~~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 240 (702)
T 2p6r_A 170 --NKALRVIGLSATAPNVTEIAEWLDADY-----YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRV--KFEELVEECVA 240 (702)
T ss_dssp --CTTCEEEEEECCCTTHHHHHHHTTCEE-----EECCCCSSCEEEEEECSSEEEEEETTEEEEEEC--CHHHHHHHHHH
T ss_pred --CcCceEEEECCCcCCHHHHHHHhCCCc-----ccCCCCCccceEEEeeCCeeeccCcchhhhhhh--hHHHHHHHHHh
Confidence 568999999999999999999998542 56678999988765432211111000 000 03334444456
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCc--ccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHH
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA--EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~--~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~ 1650 (2158)
+++++||||++++.|+.++..|...+.. ++.... +.+........+..+.+++..||++|||+|+.++|..
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 313 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAK-------YVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRV 313 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHT-------TCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHH
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHh-------hcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHH
Confidence 7899999999999999999999765321 111110 0000011123456788888899999999999999999
Q ss_pred HHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChH
Q 000114 1651 VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2158)
Q Consensus 1651 v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~ 1730 (2158)
+++.|++|.++|||||+++++|||+|++.+||.+++.||+. ..|+|..+|+||+|||||+|+|..|.|++++...+.
T Consensus 314 v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 314 VEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY---SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp HHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSS---EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred HHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999999999999999999999999999999999933 689999999999999999999999999999998875
Q ss_pred H-HHHHHhh-CCCccccchhh--HHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHH
Q 000114 1731 E-YYKKFLY-DAFPVESHLHH--FLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSE 1806 (2158)
Q Consensus 1731 ~-~~~k~l~-~~~piES~L~~--~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~ 1806 (2158)
+ ++++++. .++|++|+|.. .|.++++++++.|++.+.+|+.+|+++||+|+++. . ++++
T Consensus 391 ~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~----------------~~~~ 453 (702)
T 2p6r_A 391 EIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-I----------------SLSY 453 (702)
T ss_dssp HHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-C----------------CCHH
T ss_pred HHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-H----------------HHHH
Confidence 4 3556764 89999999975 79999999999999999999999999999998754 1 2358
Q ss_pred HHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCC-CCHHHHHHHHhcCccccCCCCCcchHH
Q 000114 1807 LVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPK-TRMKGLLEVLASASEYAQLPIRPGEEE 1885 (2158)
Q Consensus 1807 lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~-~~~~~lL~ils~a~Ef~~i~vR~~E~~ 1885 (2158)
.+++++..|.+.|||..+ +.+.+|++|+++|+||++|.|+++|..++... .+..++|.++|.+.||.++++|++|+.
T Consensus 454 ~~~~al~~L~~~g~i~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e~~ 531 (702)
T 2p6r_A 454 ELERVVRQLENWGMVVEA--AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSW 531 (702)
T ss_dssp HHHHHHHHHHHTTSEEES--SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHH
T ss_pred HHHHHHHHHHHCcCeeEC--CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCchHH
Confidence 999999999999999875 56899999999999999999999999998874 556799999999999999999999954
Q ss_pred HHHHHhh-cCccccCCCCCCC-------hHHHHHHHHHHHhcCCCCCC------CchhhHHHHHHHHHHHHHHHHHHHHh
Q 000114 1886 VVRRLIH-HQRFSFENPKFTD-------PHVKANALLQAHFSRQQVGG------NLKLDQEEVLLSASRLLQAMVDVISS 1951 (2158)
Q Consensus 1886 ~l~~L~~-~~p~~~~~~~~~~-------~~~K~~lLLqAhlsR~~lp~------~l~~D~~~Il~~~~rLl~a~vdi~~~ 1951 (2158)
+...+.+ ..++ .+.+.+.. ++.|+++|||||++|.+++. .+.+|+++++++|.||++||++||..
T Consensus 532 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~ 610 (702)
T 2p6r_A 532 VEEEAFRLRKEL-SYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEE 610 (702)
T ss_dssp HHHHHHHHGGGS-SCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccc-cCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 1333 11112344 89999999999999998752 25899999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHH
Q 000114 1952 NGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIAR 2031 (2158)
Q Consensus 1952 ~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~ 2031 (2158)
.||. .+++|+|||.||+|++++||+|||||+..++++|.++| ++|++||++++ +++..+++ +.+.++|.+
T Consensus 611 ~g~~----~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g---~~s~~~l~~~~-~~l~~ll~--~~~~~~i~~ 680 (702)
T 2p6r_A 611 VGNT----SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAG---IRNAEDIVRHR-EKVASLIG--RGIAERVVE 680 (702)
T ss_dssp TTCC----SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTT---CCSHHHHHHTH-HHHHHHHC--HHHHHHHHH
T ss_pred cCHH----HHHHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHHHcC---CCCHHHHHhhh-HHHHHHhC--hhHHHHHHH
Confidence 9997 77899999999999999999999999999999999999 99999999999 88888887 889999999
Q ss_pred HHccCCceEEEEE
Q 000114 2032 FCNRFPNIDMSFE 2044 (2158)
Q Consensus 2032 ~~~~~P~i~v~~~ 2044 (2158)
.+. +|.++|++.
T Consensus 681 ~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 681 GIS-VKSLNPESA 692 (702)
T ss_dssp HHH-HHC------
T ss_pred hcC-CCccCcchh
Confidence 999 999998654
No 8
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.7e-75 Score=799.32 Aligned_cols=658 Identities=23% Similarity=0.333 Sum_probs=533.9
Q ss_pred ChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1328 ~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
+....+.+.. ||.+|+|+|+++++.++..++|++++||||||||++|.+++++.+.. .++ +++|++|+++|+.|+
T Consensus 16 ~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~--~il~i~P~r~La~q~ 91 (715)
T 2va8_A 16 PSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--NGG--KAIYVTPLRALTNEK 91 (715)
T ss_dssp CHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--SCS--EEEEECSCHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--CCC--eEEEEeCcHHHHHHH
Confidence 3333333333 69999999999999966668899999999999999999999998875 244 999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHH
Q 000114 1407 YRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLE 1485 (2158)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e 1485 (2158)
+++|+ ++... |++++.++|+.....+.+..++|+|+|||+|+.++++ ....++++++|||||+|.+++ .+|+.++
T Consensus 92 ~~~~~-~~~~~-g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~~~~~l~ 167 (715)
T 2va8_A 92 YLTFK-DWELI-GFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH--RPEWLNEVNYFVLDELHYLNDPERGPVVE 167 (715)
T ss_dssp HHHHG-GGGGG-TCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHH--CCGGGGGEEEEEECSGGGGGCTTTHHHHH
T ss_pred HHHHH-HhhcC-CCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhC--ChhHhhccCEEEEechhhcCCcccchHHH
Confidence 99995 67654 8899999999887766667889999999999998887 344589999999999999987 5788888
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccc------cchHH---HH
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI------TNFEA---RM 1556 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~------~~~~~---~~ 1556 (2158)
.++.+++ +.|+|+||||++|.+++++|++... +....||+|+..++..... ..+.. ..
T Consensus 168 ~i~~~~~--------~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 168 SVTIRAK--------RRNLLALSATISNYKQIAKWLGAEP-----VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp HHHHHHH--------TSEEEEEESCCTTHHHHHHHHTCEE-----EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred HHHHhcc--------cCcEEEEcCCCCCHHHHHHHhCCCc-----cCCCCCCCCceEEEEecCCcccceeeecCcchhhh
Confidence 8888776 6899999999999999999998542 5567789988766532110 00000 00
Q ss_pred HhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCC-CcccchhhHhh------hhHHHHH
Q 000114 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLW-PAEEVEPFIDN------IQEEMLK 1629 (2158)
Q Consensus 1557 ~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~-~~~~l~~~~~~------i~d~~L~ 1629 (2158)
.......+..+...+.+++++||||++++.|+.++..|....... ++.. ....+....+. ..+..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 308 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFV------SLDENALSEILKQLDDIEEGGSDEKELLK 308 (715)
T ss_dssp EESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS------CCCHHHHHHHHHHHHTCCSSCHHHHHHHH
T ss_pred cccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhc------cCChHHHHHHHHHHHHhhhccccccHHHH
Confidence 011234455555555778999999999999999999997654320 0000 00111112221 2346788
Q ss_pred HHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCC-cCcCCCHHHHHHhhc
Q 000114 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQEN-AHTDYPVTDLLQMMG 1708 (2158)
Q Consensus 1630 ~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~-~~~~~s~~~~lQr~G 1708 (2158)
+.+..||++|||+|+.++|..+++.|++|.++|||||+++++|||+|++.+||.+++.|+++.. ...|+|..+|+||+|
T Consensus 309 ~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~G 388 (715)
T 2va8_A 309 SLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSG 388 (715)
T ss_dssp HHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHT
T ss_pred HHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhh
Confidence 8889999999999999999999999999999999999999999999999999999999994321 257899999999999
Q ss_pred cCCCCCCCCceEEEEEecCChH--HHHHHHhh-CCCccccchhh--HHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhh
Q 000114 1709 HASRPLLDNSGKCVILCHAPRK--EYYKKFLY-DAFPVESHLHH--FLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRL 1783 (2158)
Q Consensus 1709 RaGR~g~d~~G~~iil~~~~~~--~~~~k~l~-~~~piES~L~~--~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl 1783 (2158)
||||+|+|..|.|++++.+.++ .++++++. +++|++|+|.. .|.++++++++.|++.+.+|+.+|+++||+|++.
T Consensus 389 RaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~ 468 (715)
T 2va8_A 389 RAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQL 468 (715)
T ss_dssp TBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHH
T ss_pred hcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhc
Confidence 9999999999999999988763 56777874 89999999965 7999999999999999999999999999999864
Q ss_pred ccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCC--CCCH
Q 000114 1784 TQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTP--KTRM 1861 (2158)
Q Consensus 1784 ~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~--~~~~ 1861 (2158)
.. .-+++++..|.+.|||..+ ++.+.+|++|+++|+||++|.|+++|..++.. ....
T Consensus 469 ~~--------------------~~~~~al~~L~~~g~i~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (715)
T 2va8_A 469 VD--------------------VYFDRAIRWLLEHSFIKEE-GNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCE 527 (715)
T ss_dssp HH--------------------HHHHHHHHHHHHTTSEEEC-SSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCH
T ss_pred ch--------------------HHHHHHHHHHHHCcCEeec-CCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCH
Confidence 32 2389999999999999865 34689999999999999999999999988876 4778
Q ss_pred HHHHHHHhcCccccCCCCCcchHHHHHHHhh-cCccccCCCCCCC-------hHHHHHHHHHHHhcCCCCCC-----Cc-
Q 000114 1862 KGLLEVLASASEYAQLPIRPGEEEVVRRLIH-HQRFSFENPKFTD-------PHVKANALLQAHFSRQQVGG-----NL- 1927 (2158)
Q Consensus 1862 ~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~-~~p~~~~~~~~~~-------~~~K~~lLLqAhlsR~~lp~-----~l- 1927 (2158)
.++|.++|.+.||.++++|++|+..+.++.. ..+..+....+.. ++.|+++|||||++|.++.. .+
T Consensus 528 ~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~ 607 (715)
T 2va8_A 528 LAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIG 607 (715)
T ss_dssp HHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCC
T ss_pred HHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCC
Confidence 9999999999999999999999999988843 3333222112222 78999999999999998752 22
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHH
Q 000114 1928 KLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDL 2007 (2158)
Q Consensus 1928 ~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl 2007 (2158)
.+|+.+++++|.||++|+.+||...||...+..+++|++||.+|+|++.+||+|||||+..++++|.++| ++|+.||
T Consensus 608 ~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~~~g---~~s~~~l 684 (715)
T 2va8_A 608 SGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNG---IKELGDV 684 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHHTT---CCSHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHHHcC---CCCHHHH
Confidence 7899999999999999999999999999988899999999999999999999999999999999999999 9999999
Q ss_pred hcCCHHHHHHHhCCChHHHHHHHH-HHccCCce
Q 000114 2008 VEMEDDERRELLQMSDVQLLDIAR-FCNRFPNI 2039 (2158)
Q Consensus 2008 ~~~~~~~r~~ll~~~~~~~~~v~~-~~~~~P~i 2039 (2158)
+ ++++++..+++ +.+.++|++ +...+|.+
T Consensus 685 ~-~~~~~l~~~l~--~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 685 V-MNPDKVKNLLG--QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp H-HCHHHHHHHHC--HHHHHHHHHHHHHHHC--
T ss_pred h-CCHHHHHHHhC--hhHHHHHHHHHHHhhccC
Confidence 9 99999999987 788888888 55556754
No 9
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=1.2e-62 Score=604.94 Aligned_cols=324 Identities=35% Similarity=0.678 Sum_probs=308.4
Q ss_pred EcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccC-CC
Q 000114 1823 IEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFE-NP 1901 (2158)
Q Consensus 1823 ~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~-~~ 1901 (2158)
+++++.+.||++|+|||+|||+|.||+.|..+++++++..++|++||.|.||+++|+|++|+..|.+|++.+|+++. +.
T Consensus 3 ~~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~ 82 (328)
T 3im1_A 3 MEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHT 82 (328)
T ss_dssp -CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTS
T ss_pred ccCCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccccC
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999998853 45
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCcccc
Q 000114 1902 KFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQ 1981 (2158)
Q Consensus 1902 ~~~~~~~K~~lLLqAhlsR~~lp~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~Q 1981 (2158)
.+++|+.|+++||||||+|+++|.+|.+|+.+|+++|.||++||+||++.+||+. ++++|+|+|||+||+|++++||+|
T Consensus 83 ~~~~~~~K~~lLLqa~isr~~l~~~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Q 161 (328)
T 3im1_A 83 SSGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQ 161 (328)
T ss_dssp CSSSHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGG
T ss_pred CCCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeC
Confidence 6888999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccCCceEEEEEEeccccccCCCeEEEEE
Q 000114 1982 LPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQV 2061 (2158)
Q Consensus 1982 LP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v 2061 (2158)
||||+++.+++|.++| ++|++||++++++++..++++++.++++|+++|++||+|+|+++|.+++.|++|+.++|+|
T Consensus 162 lp~i~~~~~~~l~~~~---i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v 238 (328)
T 3im1_A 162 IPHFNNKILEKCKEIN---VETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITI 238 (328)
T ss_dssp STTCCHHHHHHHHHTT---CCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEE
T ss_pred CCCCCHHHHHHHHhCC---CCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEE
Confidence 9999999999999999 9999999999999999999999999999999999999999999999988999999999999
Q ss_pred EEEEcCCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeeccc-ceEEEEEEEecCCCCceEEEEEEEeCCcc
Q 000114 2062 VLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQR-KSRVKLDFAAPAEAGKKTYTLYFMCDSYM 2140 (2158)
Q Consensus 2062 ~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~-~~~~~l~f~~P~~~G~~~~~l~~~sDsY~ 2140 (2158)
+++|++++ ..+.||||+||+.|.|+||++|||.++|+|+++||+++.+ .++++++|++|+ +|.|+|++|+|||||+
T Consensus 239 ~l~~~~~~--~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~~~~~~~~f~~p~-~g~~~~~v~~vsD~yl 315 (328)
T 3im1_A 239 QLTRDVEP--ENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPT-SGKHNLTIWCVCDSYL 315 (328)
T ss_dssp EEEESSCC--SCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSSEEEEEEEEECCC-SEEEEEEEEEEESSCS
T ss_pred EEEECCCC--CCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeecccccceEEEEEEEcCC-CCcEEEEEEEEecCCc
Confidence 99997643 3468999999999999999999999999999999999975 789999999995 6999999999999999
Q ss_pred ccCcEEEEEEEee
Q 000114 2141 GCDQEYAFTVDVK 2153 (2158)
Q Consensus 2141 G~D~~~~~~l~V~ 2153 (2158)
|||++++|+++|.
T Consensus 316 G~d~~~~~~l~V~ 328 (328)
T 3im1_A 316 DADKELSFEINVK 328 (328)
T ss_dssp SCCEEEEEEEEEC
T ss_pred ceeEEEEEEEEeC
Confidence 9999999999984
No 10
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=3.1e-62 Score=603.26 Aligned_cols=323 Identities=57% Similarity=0.998 Sum_probs=279.7
Q ss_pred CcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCCh
Q 000114 1827 MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDP 1906 (2158)
Q Consensus 1827 ~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~ 1906 (2158)
+.+.||++|+|||+|||+|.||+.|+..++++++..++|++||.|.||+++|+|++|+..|.+|++++|++++.+.+++|
T Consensus 11 g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~ 90 (339)
T 2q0z_X 11 MDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDP 90 (339)
T ss_dssp --------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCH
T ss_pred ceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998876678999
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCC
Q 000114 1907 HVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFM 1986 (2158)
Q Consensus 1907 ~~K~~lLLqAhlsR~~lp~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~ 1986 (2158)
+.|+++||||||+|+++|.+|.+|+.+|+++|.||++||+||++.+||+.+++++|+|+|||+||+|++++||+|||||+
T Consensus 91 ~~K~~lLLqa~isr~~l~~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~ 170 (339)
T 2q0z_X 91 HVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFT 170 (339)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCC
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecCCCCC
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccCCceEEEEEEeccccccCCCeEEEEEEEEEc
Q 000114 1987 KDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERD 2066 (2158)
Q Consensus 1987 ~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~ 2066 (2158)
++.+++|.++| +.|+++|++++++++..+|++++.++++|+++|++||+|+|+++|.+++.+++|+.++|+|+++|+
T Consensus 171 ~~~~~~l~~~~---i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~ 247 (339)
T 2q0z_X 171 SEHIKRCTDKG---VESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLERE 247 (339)
T ss_dssp HHHHHHHHHTT---CCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEEC
T ss_pred HHHHHHHHhcC---CCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEEC
Confidence 99999999999 999999999999999999999999999999999999999999999998889999999999999996
Q ss_pred CCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccceEEEEEEEecCCCCceEEEEEEEeCCccccCcEE
Q 000114 2067 LEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEY 2146 (2158)
Q Consensus 2067 ~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~~~~l~f~~P~~~G~~~~~l~~~sDsY~G~D~~~ 2146 (2158)
++. .+.||||+||+.|.|+||++|||.++|+|++++|+++.+..+++++|++| .+|.++|++++|||+|+|||+++
T Consensus 248 ~~~---~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~~~~~l~f~~P-~~g~~~~~v~~vSD~ylG~D~~~ 323 (339)
T 2q0z_X 248 EEV---TGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQEY 323 (339)
T ss_dssp SSC---CSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSEEEEEEEEECC-SSEEEEEEEEEEESSCSSCCEEE
T ss_pred CCC---CCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEecccceEEEEEEECC-CCCCeeEEEEEEcccccCcceEE
Confidence 432 25799999999999999999999999999999999999888899999999 89999999999999999999999
Q ss_pred EEEEEeecCC
Q 000114 2147 AFTVDVKEAG 2156 (2158)
Q Consensus 2147 ~~~l~V~~~~ 2156 (2158)
+|+++|.+++
T Consensus 324 ~i~~~v~~~~ 333 (339)
T 2q0z_X 324 KFSVDVKEAE 333 (339)
T ss_dssp EEEEEEBCC-
T ss_pred EEEEEEecCc
Confidence 9999998875
No 11
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=2.5e-53 Score=523.78 Aligned_cols=306 Identities=24% Similarity=0.401 Sum_probs=257.8
Q ss_pred CCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhcCCCCCCC-CCCC
Q 000114 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEE 1069 (2158)
Q Consensus 991 ~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~~~-~~~~ 1069 (2158)
.|.+.||++|||||+|||+|.||+.|+..+++.++..++|++||.|.||.++++|++|+.+|.+|.+++|+|+++ .+++
T Consensus 10 ~g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~ 89 (339)
T 2q0z_X 10 HMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFND 89 (339)
T ss_dssp ---------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTC
T ss_pred CceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCC
Confidence 477999999999999999999999999999999999999999999999999999999999999999999999964 6889
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCC
Q 000114 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNG 1149 (2158)
Q Consensus 1070 ~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~ 1149 (2158)
|+.|+++||||||||++++ .+|.+|+.+|+++|.||++||+||+..+||+..+..+++|||||+||+|++++||+||||
T Consensus 90 ~~~K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~ 168 (339)
T 2q0z_X 90 PHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPH 168 (339)
T ss_dssp HHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTT
T ss_pred HHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecCCC
Confidence 9999999999999999998 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCC-CchhhccCChHHhhhhhcCch-hHHHHHHHHhcCCcceEEEEEee---c-cCceEEEEEEEecCC
Q 000114 1150 IPNEILMKLEKKDF-AWERYYDLSPQELGELIRFPK-MGRTLHKFVHQFPKLILAAHVQP---I-TRTVLKVELTITPDF 1223 (2158)
Q Consensus 1150 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~P~~~~~~~~~p---~-~~~~~~~~l~~~~~~ 1223 (2158)
||++++++|+++|+ +++++.++++++++.++++++ .++.+++++++||+++|++.++| | +++.++|+|++++++
T Consensus 169 i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~~ 248 (339)
T 2q0z_X 169 FTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREE 248 (339)
T ss_dssp CCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEECS
T ss_pred CCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEECC
Confidence 99999999999998 899999999999999999764 66999999999999999999996 6 478999999999999
Q ss_pred cccCCCCCCc------ccEEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEEEEecccccCCCccc
Q 000114 1224 LWDDKVHGYV------EPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297 (2158)
Q Consensus 1224 ~~~~~~~~~~------~~~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~~~ 1297 (2158)
+|+..+|++. |.|||||+|++++.|++++++.+++ ..++.++|++| .|++++|+++++||+|+|++.+.
T Consensus 249 ~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~---~~~~~l~f~~P--~~g~~~~~v~~vSD~ylG~D~~~ 323 (339)
T 2q0z_X 249 EVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQ---KAKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQEY 323 (339)
T ss_dssp SCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSS---EEEEEEEEECC--SSEEEEEEEEEEESSCSSCCEEE
T ss_pred CCCCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEeccc---ceEEEEEEECC--CCCCeeEEEEEEcccccCcceEE
Confidence 9999998754 5699999999999999999999877 34678999999 78999999999999999999999
Q ss_pred ccccc
Q 000114 1298 PVSFR 1302 (2158)
Q Consensus 1298 ~i~~~ 1302 (2158)
+++|.
T Consensus 324 ~i~~~ 328 (339)
T 2q0z_X 324 KFSVD 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99875
No 12
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=1.9e-52 Score=514.26 Aligned_cols=305 Identities=24% Similarity=0.375 Sum_probs=281.2
Q ss_pred CCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhcCCCCC--CCCCC
Q 000114 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV--KESLE 1068 (2158)
Q Consensus 991 ~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~--~~~~~ 1068 (2158)
++.+.||++|+|||+|||+|.||+.|++.+++.++..++|+++|.|+||.++++|++|+.+|.+|..++|+|+ ++.++
T Consensus 6 ~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~ 85 (328)
T 3im1_A 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSG 85 (328)
T ss_dssp CCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSCSS
T ss_pred CCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccccCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999997 56788
Q ss_pred ChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccC
Q 000114 1069 EPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFN 1148 (2158)
Q Consensus 1069 ~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~ 1148 (2158)
+|+.|+++||||||||++++. +|.+|+.+|+++|.||++||+||+..+||+. +.++++|||||+||+|++++||+|||
T Consensus 86 ~~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Qlp 163 (328)
T 3im1_A 86 SVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIP 163 (328)
T ss_dssp SHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGST
T ss_pred CHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeCCC
Confidence 999999999999999999987 9999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcCc-hhHHHHHHHHhcCCcceEEEEEee---c-cCceEEEEEEEecC
Q 000114 1149 GIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQP---I-TRTVLKVELTITPD 1222 (2158)
Q Consensus 1149 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~P~~~~~~~~~p---~-~~~~~~~~l~~~~~ 1222 (2158)
|||++++++|+++|+ +++++.++++++++++++++ +.++.+++++++||+++|+++++| | +++.++|.|+++++
T Consensus 164 ~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~ 243 (328)
T 3im1_A 164 HFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRD 243 (328)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEEEEES
T ss_pred CCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEEEEEEC
Confidence 999999999999998 89999999999999999865 588999999999999999999986 7 57999999999999
Q ss_pred CcccC-CC------CCCcccEEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEEEEecccccCCCc
Q 000114 1223 FLWDD-KV------HGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQT 1295 (2158)
Q Consensus 1223 ~~~~~-~~------~~~~~~~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~ 1295 (2158)
|.|++ .+ |+..|+||+||+|++++.|++.+++.+.+. ..++.++|.+| +|++++|+++++||+|+|+++
T Consensus 244 ~~~~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~--~~~~~~~f~~p--~~g~~~~~v~~vsD~ylG~d~ 319 (328)
T 3im1_A 244 VEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE--TQQYELEFDTP--TSGKHNLTIWCVCDSYLDADK 319 (328)
T ss_dssp SCCSCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSS--EEEEEEEEECC--CSEEEEEEEEEEESSCSSCCE
T ss_pred CCCCCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeeccccc--ceEEEEEEEcC--CCCcEEEEEEEEecCCcceeE
Confidence 99965 34 455677999999999999999999998652 23444555555 679999999999999999999
Q ss_pred cccccc
Q 000114 1296 VLPVSF 1301 (2158)
Q Consensus 1296 ~~~i~~ 1301 (2158)
+.++.+
T Consensus 320 ~~~~~l 325 (328)
T 3im1_A 320 ELSFEI 325 (328)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988865
No 13
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-42 Score=478.26 Aligned_cols=396 Identities=25% Similarity=0.358 Sum_probs=295.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
++..|+++|.++++.++.+ .++|++||||||||++|++|++..+..+ .+++|++|+++|+.|+++.|.
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g-~dvLV~ApTGSGKTlva~l~i~~~l~~g-----------~rvlvl~PtraLa~Q~~~~l~ 248 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKNK-----------QRVIYTSPIKALSNQKYRELL 248 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTT-CCEEEECCSSSHHHHHHHHHHHHHHHTT-----------CEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHHHHHHhcC-----------CeEEEEcCcHHHHHHHHHHHH
Confidence 3457999999999997655 5699999999999999999999988542 489999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~ 650 (2158)
+.++ .|+.++|+.+... +++|+|+||+++..+..... ..+.++++|||||||++.+ +||..++.++..+
T Consensus 249 ~~~~----~VglltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~--~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l 318 (1108)
T 3l9o_A 249 AEFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGS--EVMREVAWVIFDEVHYMRDKERGVVWEETIILL 318 (1108)
T ss_dssp HHTS----SEEEECSSCBCCC----SCSEEEEEHHHHHHHHHHCS--SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS
T ss_pred HHhC----CccEEeCccccCC----CCCEEEeChHHHHHHHHcCc--cccccCCEEEEhhhhhccccchHHHHHHHHHhc
Confidence 9876 5788999987653 58999999999844443332 4578899999999999988 7899888876543
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccC---------Chh--HHHH-H
Q 000114 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK---------KPL--QRFQ-L 718 (2158)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~---------~~~--~~~~-~ 718 (2158)
+..+|+|+||||+||..+++.|++.....+...+...++|+|+...++..... ... ..+. .
T Consensus 319 -------~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~ 391 (1108)
T 3l9o_A 319 -------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 391 (1108)
T ss_dssp -------CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHH
T ss_pred -------CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHH
Confidence 67899999999999999999999877666778888899999987655421110 000 0000 0
Q ss_pred ---h------------------------------hHHHHHHHH--HHhCCCeEEEEecChHHHHHHHHHHHHHhhccccc
Q 000114 719 ---M------------------------------NDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763 (2158)
Q Consensus 719 ---l------------------------------~~~~~~~i~--~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~ 763 (2158)
+ ...++..+. ...+.+++||||++++.|..++..|...+......
T Consensus 392 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e 471 (1108)
T 3l9o_A 392 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 471 (1108)
T ss_dssp HTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC--
T ss_pred HHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHH
Confidence 0 111111111 12235699999999999999999987665443211
Q ss_pred ccccccC-chhHHHHHhh-hhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEE
Q 000114 764 GRFLKED-SVSREILQSH-TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (2158)
Q Consensus 764 ~~~~~~~-~~~~~~l~~~-~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v 841 (2158)
...+..- ......+... ........+..++..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 472 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~ 551 (1108)
T 3l9o_A 472 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 551 (1108)
T ss_dssp --CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEE
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceE
Confidence 0000000 0000000000 0011223466778899999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC-cHHHHHHhh-cCCCcccchhhHhhHHHHHH
Q 000114 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLM-NQQLPIESQFVSKLADQLNA 918 (2158)
Q Consensus 842 VI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-~~~~y~~ll-~~~~pieS~l~~~l~d~lna 918 (2158)
||+++.+|++.. ..++|+.+|+||+|||||.|.|..|.||++++.. +...+..++ ..+.|++|+|.......+|.
T Consensus 552 VI~~~~~~d~~~--~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ilnl 628 (1108)
T 3l9o_A 552 VFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 628 (1108)
T ss_dssp EESCSEEESSSC--EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_pred EEecCcccCccc--cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHHHH
Confidence 999999999875 4578999999999999999999999999999876 455566664 45689999987655444443
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7.1e-41 Score=447.09 Aligned_cols=368 Identities=19% Similarity=0.253 Sum_probs=273.6
Q ss_pred ccccCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcE
Q 000114 476 LIKISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYK 552 (2158)
Q Consensus 476 l~~i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~k 552 (2158)
+.....|++++...+ .||.+|+|+|.++++.++.+ +.++|++||||||||++|++|+++.+...... ...+++
T Consensus 73 l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~----~~~~~~ 148 (563)
T 3i5x_A 73 LLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----SQYMVK 148 (563)
T ss_dssp HHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----STTSCC
T ss_pred HhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc----ccCCee
Confidence 334455888888887 68999999999999999964 56799999999999999999999998875422 123568
Q ss_pred EEEEcccHHHHHHHHHHHHhhccc----CCcEEEEEeCCCccCHhh----hccccEEEcchhHHHHHHhccCCCcccccc
Q 000114 553 IVYVAPMKALVAEVVGNLSNRLQM----YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLV 624 (2158)
Q Consensus 553 il~iaP~kaLa~q~~~~~~~~~~~----~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v 624 (2158)
+|||+||++||.|+++.+.+++.. .++.+..++|+....... ...++|+|+||++|..+.++.. ...++.+
T Consensus 149 ~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~ 227 (563)
T 3i5x_A 149 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRFV 227 (563)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTTC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc-ccccccc
Confidence 999999999999999999986542 245688888887654432 3478999999999844333321 1357789
Q ss_pred ceEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc-eEEec--CCcccc--
Q 000114 625 KLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFD--NSYRPV-- 698 (2158)
Q Consensus 625 ~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~-~~~f~--~~~rpv-- 698 (2158)
++|||||||++.+ .+++.++.++..+..........+|++++|||+++. +..+.......+ ...+. ....+.
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDK--VQKLANNIMNKKECLFLDTVDKNEPEAH 305 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTH--HHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHH--HHHHHHHhcCCCceEEEeccCCCCcccc
Confidence 9999999999987 689999999888766555555688999999999863 333333222221 11111 111121
Q ss_pred -cceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHH
Q 000114 699 -PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777 (2158)
Q Consensus 699 -~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l 777 (2158)
.+.+.+... .........+...+...+.....++++||||+|++.|..++..|......
T Consensus 306 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~------------------ 365 (563)
T 3i5x_A 306 ERIDQSVVIS--EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK------------------ 365 (563)
T ss_dssp TTEEEEEEEE--SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT------------------
T ss_pred ccCceEEEEC--chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC------------------
Confidence 122222222 11222222233333444444455789999999999999999999875311
Q ss_pred HhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccc
Q 000114 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857 (2158)
Q Consensus 778 ~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~ 857 (2158)
...+..|||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ |+++.
T Consensus 366 ----------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~p~---- 421 (563)
T 3i5x_A 366 ----------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGVPS---- 421 (563)
T ss_dssp ----------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESCCS----
T ss_pred ----------------CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE----ECCCC----
Confidence 245788999999999999999999999999999999999999999999999 55554
Q ss_pred cCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhh
Q 000114 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2158)
Q Consensus 858 ~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 898 (2158)
++.+|+||+|||||.| ..|.|++++...+..++..+.
T Consensus 422 --s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 422 --ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp --STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred --chhhhhhhcCccccCC--CCceEEEEEchhHHHHHHHHH
Confidence 5668999999999987 679999999999888777664
No 15
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-41 Score=467.26 Aligned_cols=388 Identities=25% Similarity=0.375 Sum_probs=292.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+|. |+++|.++++.+..+ ++++++||||||||++|+++++..+.. +.++||++|+++|+.|+++.|.
T Consensus 84 ~f~-L~~~Q~eai~~l~~g-~~vLV~apTGSGKTlva~lai~~~l~~-----------g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 84 PFT-LDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SSC-CCHHHHHHHHHHHHT-CEEEEECCTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHHHHHhcc-----------CCeEEEECChHHHHHHHHHHHH
Confidence 464 999999999997765 569999999999999999999988753 2489999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~ 650 (2158)
+.++ .|+.++|+..... +++|+|+|||++..+..+.. ..+.++++|||||||++.+ .||..++.++..+
T Consensus 151 ~~~~----~vglltGd~~~~~----~~~IvV~Tpe~L~~~L~~~~--~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGS--EVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp HHHS----CEEEECSSCEECT----TCSEEEEEHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred HHhC----CEEEEeCCCccCC----CCCEEEEcHHHHHHHHHcCc--chhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 9875 6888999987653 58999999999855444432 4678999999999999988 6999998876543
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeec---------cCCh------hHH
Q 000114 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ---------VKKP------LQR 715 (2158)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~---------~~~~------~~~ 715 (2158)
+..+++|+||||+||..+++.|+......+...+...+||+|+...++... .... ...
T Consensus 221 -------~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 221 -------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp -------CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred -------CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 568999999999999999999998654556777778889999877655311 0000 000
Q ss_pred HHHh------------------------------hHHHHHHH--HHHhCCCeEEEEecChHHHHHHHHHHHHHhhccccc
Q 000114 716 FQLM------------------------------NDLCYEKV--VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763 (2158)
Q Consensus 716 ~~~l------------------------------~~~~~~~i--~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~ 763 (2158)
...+ ...+...+ ....+..++||||+|++.|+.++..|...+.....-
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 0000 00011111 112235699999999999999999886543221100
Q ss_pred ccccccCchhHHHHHhhhhcc--------CcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccC
Q 000114 764 GRFLKEDSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN 835 (2158)
Q Consensus 764 ~~~~~~~~~~~~~l~~~~~~~--------~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVd 835 (2158)
............... ....+..++..||++|||||++.+|..+++.|++|.++|||||+++++|||
T Consensus 374 ------~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GID 447 (1010)
T 2xgj_A 374 ------KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN 447 (1010)
T ss_dssp ------HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTT
T ss_pred ------HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCC
Confidence 000000111111111 123456678899999999999999999999999999999999999999999
Q ss_pred CCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC-cHHHHHHhh-cCCCcccchhhHhhH
Q 000114 836 LPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLM-NQQLPIESQFVSKLA 913 (2158)
Q Consensus 836 lP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-~~~~y~~ll-~~~~pieS~l~~~l~ 913 (2158)
+|++++||++...||... ..++|+.+|+||+|||||.|.|..|.|++++++. +...+.+++ ....|++|+|.....
T Consensus 448 iP~~~vVI~~~~kfd~~~--~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~ 525 (1010)
T 2xgj_A 448 MPAKTVVFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYN 525 (1010)
T ss_dssp CCBSEEEESCSEEECSSC--EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHH
T ss_pred CCCceEEEeCCcccCCcC--CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcHH
Confidence 999999999888888753 4567999999999999999999899999999875 666666664 556789999875544
Q ss_pred HHHH
Q 000114 914 DQLN 917 (2158)
Q Consensus 914 d~ln 917 (2158)
..+|
T Consensus 526 ~iln 529 (1010)
T 2xgj_A 526 MILN 529 (1010)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 16
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-39 Score=418.41 Aligned_cols=337 Identities=17% Similarity=0.273 Sum_probs=259.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++++...+ .||.+|+|+|.++++.++.++ +++++||||||||++|++|+++.+...... ....++++||++|
T Consensus 62 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~-d~i~~a~TGsGKT~a~~lpil~~l~~~~~~---~~~~~~~~lil~P 137 (434)
T 2db3_A 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGR-DLMACAQTGSGKTAAFLLPILSKLLEDPHE---LELGRPQVVIVSP 137 (434)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHHHHHSCCC---CCTTCCSEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCCchHHHHHHHHHHHHhcccc---cccCCccEEEEec
Confidence 4788888877 799999999999999988764 599999999999999999999998765321 1224578999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|++||.|+++.+.++....++++..++|+.....+. ..+++|+|+||+++ +.+.+.. ..+.++++||+||||+
T Consensus 138 treLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~~~~lVlDEah~ 214 (434)
T 2db3_A 138 TRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF---ITFEDTRFVVLDEADR 214 (434)
T ss_dssp SHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS---CCCTTCCEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC---cccccCCeEEEccHhh
Confidence 999999999999998888889999999998765432 35789999999998 5444432 4578899999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcc--cccceeEEEeeccCC
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR--PVPLSQQYIGIQVKK 711 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~r--pv~l~~~~~~~~~~~ 711 (2158)
+.+ ++++.+..++..+ ......|++++|||+| .++..+.........+....... ...+.+.+..+...
T Consensus 215 ~~~~gf~~~~~~i~~~~-----~~~~~~q~l~~SAT~~--~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~- 286 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHV-----TMRPEHQTLMFSATFP--EEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKY- 286 (434)
T ss_dssp HTSTTTHHHHHHHHHCT-----TSCSSCEEEEEESCCC--HHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGG-
T ss_pred hhccCcHHHHHHHHHhc-----CCCCCceEEEEeccCC--HHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcH-
Confidence 987 5777776665532 1256789999999998 45666655444343333222211 12333344333222
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh
Q 000114 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2158)
Q Consensus 712 ~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (2158)
.+...+ .+.+.. . ..++||||++++.|..++..|...+
T Consensus 287 --~k~~~l----~~~l~~-~-~~~~lVF~~t~~~a~~l~~~L~~~~---------------------------------- 324 (434)
T 2db3_A 287 --AKRSKL----IEILSE-Q-ADGTIVFVETKRGADFLASFLSEKE---------------------------------- 324 (434)
T ss_dssp --GHHHHH----HHHHHH-C-CTTEEEECSSHHHHHHHHHHHHHTT----------------------------------
T ss_pred --HHHHHH----HHHHHh-C-CCCEEEEEeCcHHHHHHHHHHHhCC----------------------------------
Confidence 122222 222222 2 3459999999999999999987643
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhccc
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2158)
..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+ ||++. +..+|+||+|||
T Consensus 325 ---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~----~d~p~------~~~~y~qriGR~ 391 (434)
T 2db3_A 325 ---FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN----YDMPS------KIDDYVHRIGRT 391 (434)
T ss_dssp ---CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE----SSCCS------SHHHHHHHHTTS
T ss_pred ---CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE----ECCCC------CHHHHHHHhccc
Confidence 34677899999999999999999999999999999999999999999999 77665 788999999999
Q ss_pred CCCCCCCccEEEEEcCCC
Q 000114 872 GRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 872 GR~g~d~~G~~iil~~~~ 889 (2158)
||.| ..|.++++++..
T Consensus 392 gR~g--~~G~a~~~~~~~ 407 (434)
T 2db3_A 392 GRVG--NNGRATSFFDPE 407 (434)
T ss_dssp SCTT--CCEEEEEEECTT
T ss_pred ccCC--CCCEEEEEEecc
Confidence 9988 679999998853
No 17
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.3e-39 Score=432.76 Aligned_cols=382 Identities=20% Similarity=0.272 Sum_probs=275.5
Q ss_pred EecCCCCCCCCCCCCcccccCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHH
Q 000114 460 IHVPAMKHKPLDPNEKLIKISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQL 536 (2158)
Q Consensus 460 i~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l 536 (2158)
+++|.....+...-..+.....|++++..++ .||.+|+|+|.++++.++.+ +.+++++||||+|||++|++|+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l 85 (579)
T 3sqw_A 6 IHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL 85 (579)
T ss_dssp EEECCCSSCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EecCccCCCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHH
Confidence 3445433332222233333445888888887 78999999999999999954 45799999999999999999999998
Q ss_pred HhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc----cCCcEEEEEeCCCccCHhh----hccccEEEcchhHH
Q 000114 537 ALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ----MYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW 608 (2158)
Q Consensus 537 ~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~----~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekl 608 (2158)
...... ...++++|||+||++|+.|+++.+.+++. ...+.+..+.|+....... ...++|+|+||+++
T Consensus 86 ~~~~~~----~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l 161 (579)
T 3sqw_A 86 INTKFD----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL 161 (579)
T ss_dssp HHTTTS----STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH
T ss_pred Hhcccc----ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHH
Confidence 775321 12356899999999999999999998753 2346678888887654432 23689999999998
Q ss_pred -HHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccC
Q 000114 609 -DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686 (2158)
Q Consensus 609 -d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~ 686 (2158)
+.+.+.. ...+..+++|||||||++.+ .+++.++.++..+..........+|++++|||+++ .+..+.......
T Consensus 162 ~~~l~~~~--~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~--~v~~~~~~~l~~ 237 (579)
T 3sqw_A 162 IDVLEKYS--NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD--KVQKLANNIMNK 237 (579)
T ss_dssp HHHHHHHH--HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT--HHHHHTTTTCCS
T ss_pred HHHHHhcc--ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh--HHHHHHHHHcCC
Confidence 4444321 14567899999999999987 58889998888775544444558899999999986 333333322222
Q ss_pred ce-EEec--CCcccc---cceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcc
Q 000114 687 GL-FYFD--NSYRPV---PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEN 760 (2158)
Q Consensus 687 ~~-~~f~--~~~rpv---~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~ 760 (2158)
+. .... ....+. .+.+.+.... . .......+...+...+.....+.++||||+|++.|..++..|......
T Consensus 238 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~- 314 (579)
T 3sqw_A 238 KECLFLDTVDKNEPEAHERIDQSVVISE-K-FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK- 314 (579)
T ss_dssp SEEEEEESSCSSSCSSCTTEEEEEEEES-S-TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT-
T ss_pred CceEEEeecCccccccccccceEEEEec-c-hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC-
Confidence 21 1111 111111 1222222221 1 122222222333333444345789999999999999999998865211
Q ss_pred cccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceE
Q 000114 761 DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840 (2158)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~ 840 (2158)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 315 ---------------------------------~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~ 361 (579)
T 3sqw_A 315 ---------------------------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVH 361 (579)
T ss_dssp ---------------------------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCC
T ss_pred ---------------------------------CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCC
Confidence 24578899999999999999999999999999999999999999999
Q ss_pred EEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 841 vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
+||+ |+++. ++.+|+||+|||||.| ..|.|++++...+..++..+
T Consensus 362 ~VI~----~~~p~------s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l 406 (579)
T 3sqw_A 362 EVLQ----IGVPS------ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVREL 406 (579)
T ss_dssp EEEE----ESCCS------STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHH
T ss_pred EEEE----cCCCC------CHHHhhhhccccccCC--CCceEEEEEcccHHHHHHHH
Confidence 9999 55543 5668999999999987 67999999999888777665
No 18
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-39 Score=449.06 Aligned_cols=378 Identities=26% Similarity=0.419 Sum_probs=286.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
|. |+|+|.++++.+.. +++++|+||||||||++|+++++..+.. ++ +++|++|+++|+.|+++++.+.|+
T Consensus 85 f~-L~~~Q~eai~~l~~-g~~vLV~apTGSGKTlva~lai~~~l~~---g~--rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 85 FT-LDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ--RVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp SC-CCHHHHHHHHHHHH-TCEEEEECCTTSCHHHHHHHHHHHHHHT---TC--EEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred CC-CCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHhcc---CC--eEEEECChHHHHHHHHHHHHHHhC---
Confidence 54 99999999999887 5669999999999999999999988754 44 999999999999999999998775
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhh
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~ 1497 (2158)
+++.++|+.... ..++|+|+|||++.+++.++ ...++++++|||||||++.+. +|..++.++..
T Consensus 155 --~vglltGd~~~~----~~~~IvV~Tpe~L~~~L~~~--~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~------- 219 (1010)
T 2xgj_A 155 --DVGLMTGDITIN----PDAGCLVMTTEILRSMLYRG--SEVMREVAWVIFDEVHYMRDKERGVVWEETIIL------- 219 (1010)
T ss_dssp --CEEEECSSCEEC----TTCSEEEEEHHHHHHHHHHT--CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH-------
T ss_pred --CEEEEeCCCccC----CCCCEEEEcHHHHHHHHHcC--cchhhcCCEEEEechhhhcccchhHHHHHHHHh-------
Confidence 578899987654 35799999999998877663 456889999999999999875 67777766543
Q ss_pred cCCCceEEEeccCCCChHHHHHHhccCC-CceEecCCCCcccccEEEEecccc----------c-----chHHHHHhcC-
Q 000114 1498 VENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDI----------T-----NFEARMQAMT- 1560 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dl~~wl~~~~-~~i~~f~~~~rpv~l~~~i~~~~~----------~-----~~~~~~~~~~- 1560 (2158)
++...++|+||||++|..++++|++... ..+..+....||+|+..++..... . .+...+..+.
T Consensus 220 l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred cCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 3568999999999999999999997432 234445556788888776543110 0 0111111110
Q ss_pred ----------------------------hHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccC
Q 000114 1561 ----------------------------KPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL 1610 (2158)
Q Consensus 1561 ----------------------------k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~ 1610 (2158)
......+...+ ....++||||+|++.|+.++..|..........
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e------ 373 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE------ 373 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH------
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH------
Confidence 11112222222 244589999999999999997774311100000
Q ss_pred CCcccchhhH----hh--------hhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCcc
Q 000114 1611 WPAEEVEPFI----DN--------IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678 (2158)
Q Consensus 1611 ~~~~~l~~~~----~~--------i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~ 1678 (2158)
...+.... .. .....+...+..||++|||||++.+|..+++.|++|.++|||||+++++|||+|++
T Consensus 374 --~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~ 451 (1010)
T 2xgj_A 374 --KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAK 451 (1010)
T ss_dssp --HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBS
T ss_pred --HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCc
Confidence 00000000 00 11244667788899999999999999999999999999999999999999999999
Q ss_pred EEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC-hHHHHHHHhh-CCCccccchhhHH
Q 000114 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFLY-DAFPVESHLHHFL 1751 (2158)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~-~~~~~~k~l~-~~~piES~L~~~l 1751 (2158)
++||.++..||+.. ..|.++.+|+||+|||||.|.|..|.|++++.+. ....+++++. .+.|++|.+....
T Consensus 452 ~vVI~~~~kfd~~~--~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~ 524 (1010)
T 2xgj_A 452 TVVFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGY 524 (1010)
T ss_dssp EEEESCSEEECSSC--EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCH
T ss_pred eEEEeCCcccCCcC--CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcH
Confidence 99999999899864 3577999999999999999988899999999876 5566777765 6788999986443
No 19
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-39 Score=453.20 Aligned_cols=410 Identities=25% Similarity=0.365 Sum_probs=294.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
+..|+|+|.++++.+.. +.++|++||||||||++|++|++..+.. ++ +++|++|+++|+.|+++++++.++
T Consensus 182 ~f~ltp~Q~~AI~~i~~-g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~--rvlvl~PtraLa~Q~~~~l~~~~~--- 252 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ--RVIYTSPIKALSNQKYRELLAEFG--- 252 (1108)
T ss_dssp SSCCCHHHHHHHHHHTT-TCCEEEECCSSSHHHHHHHHHHHHHHHT---TC--EEEEEESSHHHHHHHHHHHHHHTS---
T ss_pred CCCCCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHHhc---CC--eEEEEcCcHHHHHHHHHHHHHHhC---
Confidence 44799999999999876 4569999999999999999999998855 44 999999999999999999997765
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhh
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~ 1497 (2158)
.++.++|+.+.. ..++|+|+||+++..++.+ ....++++++|||||||++.+. +|..++.++. .
T Consensus 253 --~VglltGd~~~~----~~~~IlV~Tpe~L~~~L~~--~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~-------~ 317 (1108)
T 3l9o_A 253 --DVGLMTGDITIN----PDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETII-------L 317 (1108)
T ss_dssp --SEEEECSSCBCC----CSCSEEEEEHHHHHHHHHH--CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHH-------H
T ss_pred --CccEEeCccccC----CCCCEEEeChHHHHHHHHc--CccccccCCEEEEhhhhhccccchHHHHHHHHH-------h
Confidence 478899987754 4579999999999887766 3345889999999999999874 4665555443 3
Q ss_pred cCCCceEEEeccCCCChHHHHHHhccCCC-ceEecCCCCcccccEEEEeccccc---------------chHHHHHhcC-
Q 000114 1498 VENKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDIT---------------NFEARMQAMT- 1560 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dl~~wl~~~~~-~i~~f~~~~rpv~l~~~i~~~~~~---------------~~~~~~~~~~- 1560 (2158)
++.+.|+|+||||++|..+++.|++.... .+..+....+|+|+..++...... .+...+..+.
T Consensus 318 l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~ 397 (1108)
T 3l9o_A 318 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 397 (1108)
T ss_dssp SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHh
Confidence 46789999999999999999999986442 355566678899887765322110 0111111000
Q ss_pred ----------------------------hHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccc---c
Q 000114 1561 ----------------------------KPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS---A 1607 (2158)
Q Consensus 1561 ----------------------------k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~---~ 1607 (2158)
......+...+ ...+++||||+|++.|..++..|............ .
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 398 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred hhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 11112222221 34568999999999999999887442211110000 0
Q ss_pred ccCCCcccchhhHh-hhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecce
Q 000114 1608 FLLWPAEEVEPFID-NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2158)
Q Consensus 1608 ~l~~~~~~l~~~~~-~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~ 1686 (2158)
++......+...-. ......+...+..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++.+||....
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~ 557 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 557 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc
Confidence 00000000000000 00124466778889999999999999999999999999999999999999999999999998888
Q ss_pred eecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC-hHHHHHHHhh-CCCccccchhhHHHHHHHHHHhcCcC
Q 000114 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFLY-DAFPVESHLHHFLHDNFNAEIVAGVI 1764 (2158)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~-~~~~~~k~l~-~~~piES~L~~~l~d~l~aeI~~~~i 1764 (2158)
.|++..+ .+.|..+|+||+|||||.|.+..|.|++++.+. ....+++++. .+.|++|.+.......+| -+..+.+
T Consensus 558 ~~d~~~~--r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~iln-ll~~~~~ 634 (1108)
T 3l9o_A 558 KWDGQQF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN-LMRVEGI 634 (1108)
T ss_dssp EESSSCE--EECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHSTTC
T ss_pred ccCcccc--ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHHH-HHHhcCC
Confidence 8888743 467999999999999999999999999999876 4566777776 688999998543333333 2233333
Q ss_pred CCHHHHHHHHHHhhh
Q 000114 1765 ENKQDAVDYLTWTFM 1779 (2158)
Q Consensus 1765 ~~~qd~id~l~~t~~ 1779 (2158)
+. -+++..+|.
T Consensus 635 -~~---~~~l~~sf~ 645 (1108)
T 3l9o_A 635 -SP---EFMLEHSFF 645 (1108)
T ss_dssp -CH---HHHHHHSSH
T ss_pred -CH---HHHHHHHHH
Confidence 22 345555554
No 20
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.5e-39 Score=446.85 Aligned_cols=382 Identities=26% Similarity=0.402 Sum_probs=290.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+++|.++++.++.+ ++++++||||||||++|++++...+.. +.++||++|+++|+.|+++.|.+.+
T Consensus 39 ~l~~~Q~~aI~~il~g-~~vlv~apTGsGKTlv~~~~i~~~~~~-----------g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQG-DSVFVAAHTSAGKTVVAEYAIAMAHRN-----------MTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CCCHHHHHHHHHHHTT-CEEEEECCTTSCSHHHHHHHHHHHHHT-----------TCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 5899999999998876 569999999999999999999887653 2489999999999999999999976
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (2158)
. +++++.++|+..... .++|+|+||+++........ ..+.++++|||||||++.+ ++|..++.++..
T Consensus 107 ~--~~~v~~l~G~~~~~~----~~~IlV~Tpe~L~~~l~~~~--~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~---- 174 (997)
T 4a4z_A 107 D--DVNIGLITGDVQINP----DANCLIMTTEILRSMLYRGA--DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM---- 174 (997)
T ss_dssp ----CCEEEECSSCEECT----TSSEEEEEHHHHHHHHHHTC--SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH----
T ss_pred C--CCeEEEEeCCCccCC----CCCEEEECHHHHHHHHHhCc--hhhcCCCEEEEECcccccccchHHHHHHHHHh----
Confidence 5 678999999886553 58999999999844333322 4578899999999999988 699999987654
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEee-------ccCCh--hHHHH----H--
Q 000114 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------QVKKP--LQRFQ----L-- 718 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~-------~~~~~--~~~~~----~-- 718 (2158)
.+..+++|+||||+||..+++.|++......++.+...+||+|+...+... ..... ...+. .
T Consensus 175 ---l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (997)
T 4a4z_A 175 ---LPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILN 251 (997)
T ss_dssp ---SCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC
T ss_pred ---cccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhh
Confidence 357899999999999999999999977667788899999999998765420 00000 00000 0
Q ss_pred -------------------------------------------------------------------hhHHHHHHHH---
Q 000114 719 -------------------------------------------------------------------MNDLCYEKVV--- 728 (2158)
Q Consensus 719 -------------------------------------------------------------------l~~~~~~~i~--- 728 (2158)
.....+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l 331 (997)
T 4a4z_A 252 GESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYL 331 (997)
T ss_dssp -----------------------------------------------------------------CCCCTTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 0000111222
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhc--------cCcchhhhhccCCeEEe
Q 000114 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM--------VKSNDLKDLLPYGFAIH 800 (2158)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~l~~ll~~gv~~h 800 (2158)
...+..++||||+|++.|+.++..|...++....-. ..-...+...... .....+..++..||++|
T Consensus 332 ~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~------~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~ 405 (997)
T 4a4z_A 332 RKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEK------SQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVH 405 (997)
T ss_dssp HHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHH------HHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEE
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHH------HHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeee
Confidence 222356999999999999999998865433221000 0001111111111 12234678889999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCcc
Q 000114 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2158)
Q Consensus 801 Hagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2158)
||||++.+|..+++.|++|.++|||||+++++|||+|+++||+.+...||+.. ..++|+.+|+||+|||||.|.+..|
T Consensus 406 H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~--~~~~s~~~y~Qr~GRAGR~G~~~~G 483 (997)
T 4a4z_A 406 HGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNG--LRELTPGEFTQMAGRAGRRGLDSTG 483 (997)
T ss_dssp CTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTE--EEECCHHHHHHHHGGGCCTTTCSSE
T ss_pred cCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCcc--CCCCCHHHHhHHhcccccCCCCcce
Confidence 99999999999999999999999999999999999999999998887787653 5688999999999999999999999
Q ss_pred EEEEEcCC--CcHHHHHHh-hcCCCcccchhhHh
Q 000114 881 EGIIITGH--SELRYYLSL-MNQQLPIESQFVSK 911 (2158)
Q Consensus 881 ~~iil~~~--~~~~~y~~l-l~~~~pieS~l~~~ 911 (2158)
.+++++.. .+...+.++ ...+.|+.|++...
T Consensus 484 ~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ 517 (997)
T 4a4z_A 484 TVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLT 517 (997)
T ss_dssp EEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCC
T ss_pred EEEEecCCCcchHHHHHHHhcCCCcccccccccc
Confidence 99999943 455666665 35677888877544
No 21
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.7e-39 Score=429.52 Aligned_cols=365 Identities=17% Similarity=0.225 Sum_probs=269.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcC--CCceEEEEEcccHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASE--TGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~--~~~~~~v~IaP~ra 1401 (2158)
.|+....+.+.. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+..... ..++++|||+|+++
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 366677777765 7999999999999999964 5689999999999999999999999877421 12348999999999
Q ss_pred HHHHHHHHHHHHhcC---CCCcEEEEEcCCcchhhh--c--ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccc
Q 000114 1402 LAKERYRDWEIKFGQ---GLGMRVVELTGETAMDLK--L--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1402 La~q~~~~~~~~f~~---~~g~~v~~ltG~~~~~~~--~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
|+.|+++.+++.+.. ..+..+..+.|+...... . ...++|+|+||+++..++.++. ...++++++|||||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc-ccccccceEEEEeCHH
Confidence 999999999964432 124567777877654321 1 2367999999999988887642 2357889999999999
Q ss_pred cccCC-CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceE-ecCCCCccc---ccEEEEeccc
Q 000114 1475 LIGGQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLF-NFPPGVRPV---PLEIHIQGVD 1548 (2158)
Q Consensus 1475 ~l~~~-~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~-~f~~~~rpv---~l~~~i~~~~ 1548 (2158)
++.++ .++.++.++..+.........+.|++++|||+++. .++..++......++ ...+...+. .+......
T Consensus 237 ~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 314 (563)
T 3i5x_A 237 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI-- 314 (563)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE--
T ss_pred HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEE--
Confidence 99876 46777778777776655555688999999999884 556555544432222 111111111 11111111
Q ss_pred ccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHH
Q 000114 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEML 1628 (2158)
Q Consensus 1549 ~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L 1628 (2158)
..................+... ..++++||||+|++.|..++..|.....
T Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~----------------------------- 364 (563)
T 3i5x_A 315 SEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFK----------------------------- 364 (563)
T ss_dssp ESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHT-----------------------------
T ss_pred CchhHhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhcc-----------------------------
Confidence 1111222222222222222222 5677899999999999999977643110
Q ss_pred HHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhc
Q 000114 1629 KATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708 (2158)
Q Consensus 1629 ~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~G 1708 (2158)
.+..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| ++..|.++.+|+||+|
T Consensus 365 ---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----------~~~~p~s~~~y~Qr~G 431 (563)
T 3i5x_A 365 ---KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVL----------QIGVPSELANYIHRIG 431 (563)
T ss_dssp ---TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEE----------EESCCSSTTHHHHHHT
T ss_pred ---CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEE----------EECCCCchhhhhhhcC
Confidence 145689999999999999999999999999999999999999999999998 5667778999999999
Q ss_pred cCCCCCCCCceEEEEEecCChHHHHHHHhh
Q 000114 1709 HASRPLLDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1709 RaGR~g~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
||||.| ..|.|++++...+..+++.+..
T Consensus 432 RagR~g--~~g~~i~~~~~~e~~~~~~l~~ 459 (563)
T 3i5x_A 432 RTARSG--KEGSSVLFICKDELPFVRELED 459 (563)
T ss_dssp TSSCTT--CCEEEEEEEEGGGHHHHHHHHH
T ss_pred ccccCC--CCceEEEEEchhHHHHHHHHHH
Confidence 999987 7899999999988888877653
No 22
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.7e-38 Score=404.13 Aligned_cols=342 Identities=18% Similarity=0.222 Sum_probs=254.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia 557 (2158)
.+++++.+.+ .||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+.... .+.++||++
T Consensus 31 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~ 102 (412)
T 3fht_A 31 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLS 102 (412)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC--------CCCCEEEEC
Confidence 4577777666 68999999999999999986 567999999999999999999998875432 345899999
Q ss_pred ccHHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 558 PMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 558 P~kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
|+++|+.|+++.+.++.... ++.+....|+..........++|+|+||+++..+.++.. ...+.++++|||||||++.
T Consensus 103 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~~iViDEah~~~ 181 (412)
T 3fht_A 103 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKVFVLDEADVMI 181 (412)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-SSCGGGCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcC-CcChhhCcEEEEeCHHHHh
Confidence 99999999999999876653 678888888887766666678999999999854443322 2456889999999999987
Q ss_pred c-C-ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcc--cccceeEEEeeccCCh
Q 000114 637 D-N-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR--PVPLSQQYIGIQVKKP 712 (2158)
Q Consensus 637 d-~-rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~r--pv~l~~~~~~~~~~~~ 712 (2158)
+ . +...+..+ ....+...|++++|||+++ .+..+.......+......... +..+.+.+.. ....
T Consensus 182 ~~~~~~~~~~~~-------~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 250 (412)
T 3fht_A 182 ATQGHQDQSIRI-------QRMLPRNCQMLLFSATFED--SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL--CSSR 250 (412)
T ss_dssp STTTTHHHHHHH-------HHTSCTTCEEEEEESCCCH--HHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEE--CSSH
T ss_pred hcCCcHHHHHHH-------HhhCCCCceEEEEEeecCH--HHHHHHHHhcCCCeEEeeccccccccCceEEEEE--cCCh
Confidence 6 2 32222222 2234668899999999984 3334433322233322222111 1122222222 2222
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhh
Q 000114 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2158)
Q Consensus 713 ~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l 792 (2158)
..+...+. .+......+++||||++++.+..++..|...+
T Consensus 251 ~~~~~~l~-----~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~----------------------------------- 290 (412)
T 3fht_A 251 DEKFQALC-----NLYGAITIAQAMIFCHTRKTASWLAAELSKEG----------------------------------- 290 (412)
T ss_dssp HHHHHHHH-----HHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT-----------------------------------
T ss_pred HHHHHHHH-----HHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC-----------------------------------
Confidence 22222222 22333457899999999999999999987642
Q ss_pred ccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
.++.++||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+++.|.++. .+.|..+|+||+||||
T Consensus 291 --~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~----~~~s~~~~~Qr~GR~g 364 (412)
T 3fht_A 291 --HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD----GNPDNETYLHRIGRTG 364 (412)
T ss_dssp --CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS----SSBCHHHHHHHHTTSS
T ss_pred --CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC----CCcchheeecccCccc
Confidence 3578899999999999999999999999999999999999999999999955444432 3458999999999999
Q ss_pred CCCCCCccEEEEEcCCCc
Q 000114 873 RPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 873 R~g~d~~G~~iil~~~~~ 890 (2158)
|.| ..|.++++++..+
T Consensus 365 R~g--~~g~~~~~~~~~~ 380 (412)
T 3fht_A 365 RFG--KRGLAVNMVDSKH 380 (412)
T ss_dssp CTT--CCEEEEEEECSHH
T ss_pred CCC--CCceEEEEEcChh
Confidence 987 6799999998765
No 23
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=407.58 Aligned_cols=351 Identities=19% Similarity=0.270 Sum_probs=255.4
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCC--------CC--CCCC
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRND--------DG--SFNH 548 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~--------~~--~~~~ 548 (2158)
.|++++...+ .||.+|+|+|.++++.++.+ ++++++||||||||++|++|+++.+...... .+ ....
T Consensus 21 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2i4i_A 21 EMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 99 (417)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccccccc
Confidence 4678888777 68999999999999988776 5599999999999999999999988654211 00 0011
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccc
Q 000114 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVK 625 (2158)
Q Consensus 549 ~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~ 625 (2158)
..+++||++|+++|+.|+++.+.+++...++++..++|+....... ..+++|+|+||+++..+..... ..+.+++
T Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~ 177 (417)
T 2i4i_A 100 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK--IGLDFCK 177 (417)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS--BCCTTCC
T ss_pred CCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC--cChhhCc
Confidence 3468999999999999999999998888889999999987655432 3468999999999844444322 4577899
Q ss_pred eEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCC--ccccccee
Q 000114 626 LLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS--YRPVPLSQ 702 (2158)
Q Consensus 626 lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~--~rpv~l~~ 702 (2158)
+|||||||++.+ .+++.+..++.... .......+++++|||+++ .+..++........+..... ..+..+.+
T Consensus 178 ~iViDEah~~~~~~~~~~~~~i~~~~~---~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 252 (417)
T 2i4i_A 178 YLVLDEADRMLDMGFEPQIRRIVEQDT---MPPKGVRHTMMFSATFPK--EIQMLARDFLDEYIFLAVGRVGSTSENITQ 252 (417)
T ss_dssp EEEESSHHHHHHTTCHHHHHHHHTSSS---CCCBTTBEEEEEESCCCH--HHHHHHHHHCSSCEEEEEC----CCSSEEE
T ss_pred EEEEEChhHhhccCcHHHHHHHHHhcc---CCCcCCcEEEEEEEeCCH--HHHHHHHHHcCCCEEEEeCCCCCCccCceE
Confidence 999999999876 46666665543210 011236789999999974 33333332222222222111 11223333
Q ss_pred EEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh
Q 000114 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (2158)
Q Consensus 703 ~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 782 (2158)
.++..... .+.. .+.+.+.....++++||||++++.+..++..|...+
T Consensus 253 ~~~~~~~~---~~~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------- 300 (417)
T 2i4i_A 253 KVVWVEES---DKRS----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG------------------------- 300 (417)
T ss_dssp EEEECCGG---GHHH----HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT-------------------------
T ss_pred EEEEeccH---hHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC-------------------------
Confidence 33333222 1222 122222222346799999999999999999887642
Q ss_pred ccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHH
Q 000114 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2158)
Q Consensus 783 ~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2158)
..+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ |+++. |..
T Consensus 301 ------------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~----~~~p~------s~~ 358 (417)
T 2i4i_A 301 ------------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDLPS------DIE 358 (417)
T ss_dssp ------------CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE----SSCCS------SHH
T ss_pred ------------CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE----EcCCC------CHH
Confidence 34778899999999999999999999999999999999999999999999 67664 888
Q ss_pred HHHHhhcccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
+|+||+|||||.| ..|.|+++++..+...+.
T Consensus 359 ~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~ 389 (417)
T 2i4i_A 359 EYVHRIGRTGRVG--NLGLATSFFNERNINITK 389 (417)
T ss_dssp HHHHHHTTBCC----CCEEEEEEECGGGGGGHH
T ss_pred HHHHhcCccccCC--CCceEEEEEccccHHHHH
Confidence 9999999999987 669999999987755444
No 24
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6e-38 Score=403.87 Aligned_cols=334 Identities=18% Similarity=0.262 Sum_probs=247.1
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC---CCceEEEEEcccHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE---TGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~---~~~~~~v~IaP~ra 1401 (2158)
.|+....+.+.. ||..|+|+|.++++.++.+ .+++++||||||||++|++|++.++..... .+++++||++||++
T Consensus 62 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSG-RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHH
Confidence 456666777765 7999999999999999875 559999999999999999999999876321 22458999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
|+.|+++.++ ++....++++..++|+..... .....++|+|+||+++..++.+. ...+++++++|+||||++.+
T Consensus 141 La~Q~~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--~~~l~~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 141 LAIQIFNEAR-KFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT--FITFEDTRFVVLDEADRMLD 217 (434)
T ss_dssp HHHHHHHHHH-HHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--SCCCTTCCEEEEETHHHHTS
T ss_pred HHHHHHHHHH-HHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC--CcccccCCeEEEccHhhhhc
Confidence 9999999998 566556788899999877542 23346799999999998887763 34588999999999999987
Q ss_pred CCCChHHHHHHHHHHHHhh--cCCCceEEEeccCCCCh-HHHHH-HhccCCCceEecCC-CCcccccEEEEecccccchH
Q 000114 1479 QGGPVLEVIVSRMRYIASQ--VENKIRIVALSTSLANA-KDLGE-WIGATSHGLFNFPP-GVRPVPLEIHIQGVDITNFE 1553 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~--~~~~~riV~lSATl~n~-~dl~~-wl~~~~~~i~~f~~-~~rpv~l~~~i~~~~~~~~~ 1553 (2158)
.+ +...++.+... .....|++++|||+++. ..++. |+. .. ..+.... ......+...+.........
T Consensus 218 ~g------f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~-~~-~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 218 MG------FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLK-NY-VFVAIGIVGGACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp TT------THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCS-SC-EEEEESSTTCCCTTEEEEEEECCGGGHH
T ss_pred cC------cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhcc-CC-EEEEeccccccccccceEEEEeCcHHHH
Confidence 64 22333333333 24678999999999753 33332 332 11 1111111 11111222222222111110
Q ss_pred HHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000114 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2158)
Q Consensus 1554 ~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2158)
.....+.. ....++||||++++.|..++..|.. .+
T Consensus 290 --------~~l~~~l~--~~~~~~lVF~~t~~~a~~l~~~L~~-----------------------------------~~ 324 (434)
T 2db3_A 290 --------SKLIEILS--EQADGTIVFVETKRGADFLASFLSE-----------------------------------KE 324 (434)
T ss_dssp --------HHHHHHHH--HCCTTEEEECSSHHHHHHHHHHHHH-----------------------------------TT
T ss_pred --------HHHHHHHH--hCCCCEEEEEeCcHHHHHHHHHHHh-----------------------------------CC
Confidence 11111222 2234599999999999999876632 24
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~ 1713 (2158)
..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++.+|| +++.|.++.+|+||+|||||.
T Consensus 325 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI----------~~d~p~~~~~y~qriGR~gR~ 394 (434)
T 2db3_A 325 FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVI----------NYDMPSKIDDYVHRIGRTGRV 394 (434)
T ss_dssp CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEE----------ESSCCSSHHHHHHHHTTSSCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEE----------EECCCCCHHHHHHHhcccccC
Confidence 5689999999999999999999999999999999999999999999999 667788999999999999998
Q ss_pred CCCCceEEEEEecCC
Q 000114 1714 LLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~ 1728 (2158)
| ..|.|++++.+.
T Consensus 395 g--~~G~a~~~~~~~ 407 (434)
T 2db3_A 395 G--NNGRATSFFDPE 407 (434)
T ss_dssp T--CCEEEEEEECTT
T ss_pred C--CCCEEEEEEecc
Confidence 7 789999998854
No 25
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.5e-38 Score=439.34 Aligned_cols=375 Identities=26% Similarity=0.429 Sum_probs=288.7
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+|+|.++++.++.+ ++++++||||||||++|++++...+.. ++ +++|++|+++|+.|+++++++.|+ ++
T Consensus 39 ~l~~~Q~~aI~~il~g-~~vlv~apTGsGKTlv~~~~i~~~~~~---g~--~vlvl~PtraLa~Q~~~~l~~~~~---~~ 109 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQG-DSVFVAAHTSAGKTVVAEYAIAMAHRN---MT--KTIYTSPIKALSNQKFRDFKETFD---DV 109 (997)
T ss_dssp CCCHHHHHHHHHHHTT-CEEEEECCTTSCSHHHHHHHHHHHHHT---TC--EEEEEESCGGGHHHHHHHHHTTC-----C
T ss_pred CCCHHHHHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHhc---CC--eEEEEeCCHHHHHHHHHHHHHHcC---CC
Confidence 4899999999999875 569999999999999999999887654 44 899999999999999999996554 57
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhhcC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~~~ 1499 (2158)
+++.++|+...+ ..++|+|+||+++.+++.+ ....++++++|||||||++.++ +|..++.++.. ++
T Consensus 110 ~v~~l~G~~~~~----~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~-------l~ 176 (997)
T 4a4z_A 110 NIGLITGDVQIN----PDANCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM-------LP 176 (997)
T ss_dssp CEEEECSSCEEC----TTSSEEEEEHHHHHHHHHH--TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH-------SC
T ss_pred eEEEEeCCCccC----CCCCEEEECHHHHHHHHHh--CchhhcCCCEEEEECcccccccchHHHHHHHHHh-------cc
Confidence 899999987654 4579999999999877655 3446789999999999999885 68888876643 36
Q ss_pred CCceEEEeccCCCChHHHHHHhccCC-CceEecCCCCcccccEEEEeccccc--------c-----hHH-----------
Q 000114 1500 NKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDIT--------N-----FEA----------- 1554 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~dl~~wl~~~~-~~i~~f~~~~rpv~l~~~i~~~~~~--------~-----~~~----------- 1554 (2158)
.++++|+||||++|..++++|++... ..++.+....||+|+..++...... . +..
T Consensus 177 ~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 177 QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 68999999999999999999998643 5677788889999998776421100 0 000
Q ss_pred ------------------------H----------------------------------HHhcChHHHHHHHHhHh--cC
Q 000114 1555 ------------------------R----------------------------------MQAMTKPTFTAIVQHAK--NE 1574 (2158)
Q Consensus 1555 ------------------------~----------------------------------~~~~~k~~~~~i~~~~~--~~ 1574 (2158)
+ .....+..+..+...+. ..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~ 336 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKREL 336 (997)
T ss_dssp ------------------------------------------------------------CCCCTTHHHHHHHHHHHTTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCC
Confidence 0 00012223334443332 34
Q ss_pred CCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhh----Hhh--------hhHHHHHHHhcccEEEecCC
Q 000114 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPF----IDN--------IQEEMLKATLRHGVGYLHEG 1642 (2158)
Q Consensus 1575 ~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~----~~~--------i~d~~L~~~l~~gv~~~H~~ 1642 (2158)
.++||||+|++.|+.++..|.......... ...+..+ ... .....++..+..||++|||+
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e--------~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~g 408 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKE--------KSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGG 408 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHH--------HHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTT
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHH--------HHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCC
Confidence 689999999999999997774311100000 0011111 111 12245677888999999999
Q ss_pred CCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEE
Q 000114 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2158)
Q Consensus 1643 l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~i 1722 (2158)
|++.+|..+++.|.+|.++|||||+++++|||+|++.||+.+...||+. .+.|++..+|+||+|||||.|.+..|.|+
T Consensus 409 l~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~--~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi 486 (997)
T 4a4z_A 409 LLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGN--GLRELTPGEFTQMAGRAGRRGLDSTGTVI 486 (997)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETT--EEEECCHHHHHHHHGGGCCTTTCSSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCc--cCCCCCHHHHhHHhcccccCCCCcceEEE
Confidence 9999999999999999999999999999999999999999999999986 46789999999999999999999999999
Q ss_pred EEecC--ChHHHHHHHhh-CCCccccch
Q 000114 1723 ILCHA--PRKEYYKKFLY-DAFPVESHL 1747 (2158)
Q Consensus 1723 il~~~--~~~~~~~k~l~-~~~piES~L 1747 (2158)
+++.. .....+++++. .+.+++|.+
T Consensus 487 ~l~~~~~~~~~~~~~~i~~~~~~l~s~~ 514 (997)
T 4a4z_A 487 VMAYNSPLSIATFKEVTMGVPTRLQSQF 514 (997)
T ss_dssp EECCSSCCCHHHHHHHHHSCCCCCCCCC
T ss_pred EecCCCcchHHHHHHHhcCCCccccccc
Confidence 99943 35566776665 788888865
No 26
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.8e-38 Score=403.05 Aligned_cols=340 Identities=18% Similarity=0.294 Sum_probs=256.7
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++.+...+ .||.+|+|+|.++++.++.++ +++++||||||||++|++|+++.+... ..+.++||++|
T Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~-~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~~~lil~P 113 (410)
T 2j0s_A 43 GLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLDIQ--------VRETQALILAP 113 (410)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHTCCTT--------SCSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCCchHHHHHHHHHHHhhc--------cCCceEEEEcC
Confidence 3667777666 689999999999999988874 599999999999999999999876432 13458999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
+++|+.|+++.+.++....++++..++|+....... ...++|+|+||+++..+.++.. ..+..+++||+||||.+
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~--~~~~~~~~vViDEah~~ 191 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS--LRTRAIKMLVLDEADEM 191 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC--ccHhheeEEEEccHHHH
Confidence 999999999999998888889999999988765432 2467999999999844443322 34678999999999988
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCC--cccccceeEEEeeccCCh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS--YRPVPLSQQYIGIQVKKP 712 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~--~rpv~l~~~~~~~~~~~~ 712 (2158)
.+ .+...+..++ ...+...+++++|||+++ ++..++......+....... ..+..+.+.+......
T Consensus 192 ~~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 260 (410)
T 2j0s_A 192 LNKGFKEQIYDVY-------RYLPPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE-- 260 (410)
T ss_dssp TSTTTHHHHHHHH-------TTSCTTCEEEEEESCCCH--HHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST--
T ss_pred HhhhhHHHHHHHH-------HhCccCceEEEEEcCCCH--HHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH--
Confidence 76 4444443332 334568899999999983 45555544333333332211 1222333333333222
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhh
Q 000114 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2158)
Q Consensus 713 ~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l 792 (2158)
..+...+.+ +......+++||||++++.+..++..|...+
T Consensus 261 ~~k~~~l~~-----~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------- 300 (410)
T 2j0s_A 261 EWKFDTLCD-----LYDTLTITQAVIFCNTKRKVDWLTEKMREAN----------------------------------- 300 (410)
T ss_dssp THHHHHHHH-----HHHHHTSSEEEEECSSHHHHHHHHHHHHHTT-----------------------------------
T ss_pred HhHHHHHHH-----HHHhcCCCcEEEEEcCHHHHHHHHHHHHhCC-----------------------------------
Confidence 222222222 2233446799999999999999999887643
Q ss_pred ccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
.++..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+||||
T Consensus 301 --~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~~p~------s~~~~~Qr~GR~g 368 (410)
T 2j0s_A 301 --FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDLPN------NRELYIHRIGRSG 368 (410)
T ss_dssp --CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSCCS------SHHHHHHHHTTSS
T ss_pred --CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE----ECCCC------CHHHHHHhccccc
Confidence 34678899999999999999999999999999999999999999999999 66664 7889999999999
Q ss_pred CCCCCCccEEEEEcCCCcHHHHHH
Q 000114 873 RPQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
|.| ..|.++++++..+...+.+
T Consensus 369 R~g--~~g~~~~~~~~~~~~~~~~ 390 (410)
T 2j0s_A 369 RYG--RKGVAINFVKNDDIRILRD 390 (410)
T ss_dssp GGG--CCEEEEEEEEGGGHHHHHH
T ss_pred CCC--CceEEEEEecHHHHHHHHH
Confidence 987 6799999999888665544
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.4e-37 Score=396.13 Aligned_cols=346 Identities=19% Similarity=0.285 Sum_probs=253.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCC-CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
|++.+...+ .||.+|+|+|.++++.++.++ .+++++||||+|||++|+++++..+.... .+.++||++|
T Consensus 12 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P 83 (395)
T 3pey_A 12 LAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--------ASPQAICLAP 83 (395)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC--------CSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC--------CCccEEEECC
Confidence 566666666 689999999999999999873 67999999999999999999998875421 3458999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccC
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~ 638 (2158)
+++|+.|+++.+.++....++.+...+|+..... ....++|+|+||+++....+... ..+.++++|||||||.+.+.
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~iIiDEah~~~~~ 160 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN-KQINAQVIVGTPGTVLDLMRRKL--MQLQKIKIFVLDEADNMLDQ 160 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT-SCBCCSEEEECHHHHHHHHHTTC--BCCTTCCEEEEETHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh-ccCCCCEEEEcHHHHHHHHHcCC--cccccCCEEEEEChhhhcCc
Confidence 9999999999999988777888888888754332 34478999999999844443322 45778999999999998763
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec--CCcccccceeEEEeeccCChhHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD--NSYRPVPLSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~--~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2158)
.+ +...+.++ ....+...+++++|||+++ .+..+............. ....+..+...+.. ......+.
T Consensus 161 ~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 231 (395)
T 3pey_A 161 QG--LGDQCIRV---KRFLPKDTQLVLFSATFAD--AVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMD--CKNEADKF 231 (395)
T ss_dssp TT--HHHHHHHH---HHTSCTTCEEEEEESCCCH--HHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEE--CSSHHHHH
T ss_pred cc--cHHHHHHH---HHhCCCCcEEEEEEecCCH--HHHHHHHHhCCCCeEEEccccccccccccEEEEE--cCchHHHH
Confidence 22 22222222 2334667999999999984 333333322222221111 11112222222222 22222222
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
..+ ..+......+++||||++++.+..++..|...+ ..
T Consensus 232 ~~l-----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-------------------------------------~~ 269 (395)
T 3pey_A 232 DVL-----TELYGLMTIGSSIIFVATKKTANVLYGKLKSEG-------------------------------------HE 269 (395)
T ss_dssp HHH-----HHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTT-------------------------------------CC
T ss_pred HHH-----HHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcC-------------------------------------Cc
Confidence 222 122333456899999999999999999987643 34
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
+..+||+|+..+|..+++.|++|+++|||||+++++|+|+|++++||+ |+++.......|..+|+||+|||||.|
T Consensus 270 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g- 344 (395)
T 3pey_A 270 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN----YDLPTLANGQADPATYIHRIGRTGRFG- 344 (395)
T ss_dssp CEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE----SSCCBCTTSSBCHHHHHHHHTTSSCTT-
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE----cCCCCCCcCCCCHHHhhHhccccccCC-
Confidence 678899999999999999999999999999999999999999999999 665544445679999999999999987
Q ss_pred CCccEEEEEcCCCcHHHHH
Q 000114 877 DSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 877 d~~G~~iil~~~~~~~~y~ 895 (2158)
..|.+++++...+...+.
T Consensus 345 -~~g~~~~~~~~~~~~~~~ 362 (395)
T 3pey_A 345 -RKGVAISFVHDKNSFNIL 362 (395)
T ss_dssp -CCEEEEEEECSHHHHHHH
T ss_pred -CCceEEEEEechHHHHHH
Confidence 669999999876544433
No 28
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.8e-37 Score=397.74 Aligned_cols=361 Identities=16% Similarity=0.232 Sum_probs=263.7
Q ss_pred CCCCCcCCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcC
Q 000114 1310 YPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASE 1387 (2158)
Q Consensus 1310 ~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~ 1387 (2158)
..+++++.++.++....+.....+.++. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|++..+.....
T Consensus 15 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~ 94 (412)
T 3fht_A 15 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 94 (412)
T ss_dssp TCTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSC
T ss_pred ccCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCC
Confidence 3455667777888777888888888887 8999999999999999986 5779999999999999999999998876433
Q ss_pred CCceEEEEEcccHHHHHHHHHHHHHHhcCC-CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhcccccccee
Q 000114 1388 TGVMRAVYIAPLEALAKERYRDWEIKFGQG-LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466 (2158)
Q Consensus 1388 ~~~~~~v~IaP~raLa~q~~~~~~~~f~~~-~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~ 1466 (2158)
.+ +++|++|+++|+.|+++.+++ +... .+..+....|+..........++|+|+||+++..++++.. ...+++++
T Consensus 95 ~~--~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~ 170 (412)
T 3fht_A 95 YP--QCLCLSPTYELALQTGKVIEQ-MGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIK 170 (412)
T ss_dssp SC--CEEEECSSHHHHHHHHHHHHH-HTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-SSCGGGCC
T ss_pred CC--CEEEECCCHHHHHHHHHHHHH-HHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcC-CcChhhCc
Confidence 33 899999999999999999984 4433 4678888888776555545567999999999988775532 33568999
Q ss_pred EEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCC-CcccccEEEE
Q 000114 1467 LFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPG-VRPVPLEIHI 1544 (2158)
Q Consensus 1467 llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~-~rpv~l~~~i 1544 (2158)
++|+||||++.+..+. ...+..+...++.+.+++++|||+++. ..+........ ..+..... .....+....
T Consensus 171 ~iViDEah~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 244 (412)
T 3fht_A 171 VFVLDEADVMIATQGH-----QDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKREEETLDTIKQYY 244 (412)
T ss_dssp EEEEETHHHHHSTTTT-----HHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSC-EEECCCGGGSSCTTEEEEE
T ss_pred EEEEeCHHHHhhcCCc-----HHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCC-eEEeeccccccccCceEEE
Confidence 9999999998764321 222333444556789999999999863 23333332221 12221111 1111222222
Q ss_pred ecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhh
Q 000114 1545 QGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQ 1624 (2158)
Q Consensus 1545 ~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~ 1624 (2158)
.... ...... .....+... ...+++||||++++.|..++..|..
T Consensus 245 ~~~~--~~~~~~-----~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~L~~---------------------------- 288 (412)
T 3fht_A 245 VLCS--SRDEKF-----QALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSK---------------------------- 288 (412)
T ss_dssp EECS--SHHHHH-----HHHHHHHHH-HSSSEEEEECSSHHHHHHHHHHHHH----------------------------
T ss_pred EEcC--ChHHHH-----HHHHHHHhh-cCCCCEEEEeCCHHHHHHHHHHHHh----------------------------
Confidence 1111 111111 111122222 4567899999999999999876632
Q ss_pred HHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHH
Q 000114 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLL 1704 (2158)
Q Consensus 1625 d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~l 1704 (2158)
.+.++.++||+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| .|+...+.....+..+|+
T Consensus 289 -------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----~~~~p~~~~~~~s~~~~~ 357 (412)
T 3fht_A 289 -------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI----NFDLPVDKDGNPDNETYL 357 (412)
T ss_dssp -------TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEE----ESSCCBCSSSSBCHHHHH
T ss_pred -------CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEE----EECCCCCCCCCcchheee
Confidence 245689999999999999999999999999999999999999999999999 333332222236789999
Q ss_pred HhhccCCCCCCCCceEEEEEecCCh
Q 000114 1705 QMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1705 Qr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
||+|||||.| ..|.|++++....
T Consensus 358 Qr~GR~gR~g--~~g~~~~~~~~~~ 380 (412)
T 3fht_A 358 HRIGRTGRFG--KRGLAVNMVDSKH 380 (412)
T ss_dssp HHHTTSSCTT--CCEEEEEEECSHH
T ss_pred cccCcccCCC--CCceEEEEEcChh
Confidence 9999999986 7899999998765
No 29
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.7e-37 Score=393.45 Aligned_cols=338 Identities=21% Similarity=0.290 Sum_probs=255.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+.+.+ .||.+|+|+|.++++.++.+. +++++||||+|||++|++|++..+.... .+.++||++|+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~li~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P~ 98 (400)
T 1s2m_A 28 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTLEKVKPKL--------NKIQALIMVPT 98 (400)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTC-CEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCcHHHHHHHHHHHHHHhhcc--------CCccEEEEcCC
Confidence 556666655 699999999999999998875 5999999999999999999998865421 34589999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHH-HHHhccCCCccccccceEEeeccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWD-IITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld-~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
++|+.|+++.+.+++...++++..++|+....... ...++|+|+||+++. .+.+.. ..+.++++||+||||++
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~---~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV---ADLSDCSLFIMDEADKM 175 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEESHHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC---cccccCCEEEEeCchHh
Confidence 99999999999998888899999999987654432 357899999999984 443332 35678999999999988
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE-ecCCcccccceeEEEeeccCChh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~-f~~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
.+ .++..++.++ ...+...+++++|||+| ..+..++......+... .........+.+.+......
T Consensus 176 ~~~~~~~~~~~i~-------~~~~~~~~~i~lSAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 243 (400)
T 1s2m_A 176 LSRDFKTIIEQIL-------SFLPPTHQSLLFSATFP--LTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEER--- 243 (400)
T ss_dssp SSHHHHHHHHHHH-------TTSCSSCEEEEEESCCC--HHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGG---
T ss_pred hhhchHHHHHHHH-------HhCCcCceEEEEEecCC--HHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechh---
Confidence 65 3333333322 23456789999999988 44555554433222222 11222222233333322221
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
.+...+ ..+......+++||||++++.+..++..|...+
T Consensus 244 ~k~~~l-----~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------------------ 282 (400)
T 1s2m_A 244 QKLHCL-----NTLFSKLQINQAIIFCNSTNRVELLAKKITDLG------------------------------------ 282 (400)
T ss_dssp GHHHHH-----HHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT------------------------------------
T ss_pred hHHHHH-----HHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC------------------------------------
Confidence 222222 223344457899999999999999999987643
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
.++..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. |..+|+||+|||||
T Consensus 283 -~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~----~~~p~------s~~~~~Qr~GR~gR 351 (400)
T 1s2m_A 283 -YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDFPK------TAETYLHRIGRSGR 351 (400)
T ss_dssp -CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSCCS------SHHHHHHHHCBSSC
T ss_pred -CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE----eCCCC------CHHHHHHhcchhcC
Confidence 35778899999999999999999999999999999999999999999999 66664 78899999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHHHHh
Q 000114 874 PQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
.| ..|.|+++++..+...+.++
T Consensus 352 ~g--~~g~~~~l~~~~~~~~~~~i 373 (400)
T 1s2m_A 352 FG--HLGLAINLINWNDRFNLYKI 373 (400)
T ss_dssp TT--CCEEEEEEECGGGHHHHHHH
T ss_pred CC--CCceEEEEeccchHHHHHHH
Confidence 87 67999999999887665543
No 30
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.8e-39 Score=420.62 Aligned_cols=349 Identities=19% Similarity=0.232 Sum_probs=143.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia 557 (2158)
.|++.+...+ .||..|+|+|.++++.++.+ +.++|++||||||||++|++|+++.+.... .++++||++
T Consensus 98 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~--------~~~~~lil~ 169 (479)
T 3fmp_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLS 169 (479)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS--------CSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC--------CCCcEEEEe
Confidence 4666666655 79999999999999999986 578999999999999999999998775432 345899999
Q ss_pred ccHHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 558 PMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 558 P~kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
|+++|+.|+++.+.++.... ++.+....|+...........+|+|+||++|..+.++.. ...+.++++|||||+|.+.
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~iViDEah~~~ 248 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKVFVLDEADVMI 248 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-CCCGGGCCEEEECCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcC-CcCcccCCEEEEECHHHHh
Confidence 99999999999998876543 677888888877766666678999999999844443322 2456889999999999987
Q ss_pred cCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE-ecCC-cccccceeEEEeeccCChhH
Q 000114 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNS-YRPVPLSQQYIGIQVKKPLQ 714 (2158)
Q Consensus 637 d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~-f~~~-~rpv~l~~~~~~~~~~~~~~ 714 (2158)
+..+.. ..+ .......+..+|+|++|||+++ .+..+.......+... .... ..+..+.+.++..... ..
T Consensus 249 ~~~~~~--~~~---~~i~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~ 319 (479)
T 3fmp_B 249 ATQGHQ--DQS---IRIQRMLPRNCQMLLFSATFED--SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR--DE 319 (479)
T ss_dssp TSTTHH--HHH---HHHHTTSCTTSEEEEEESCCCH--HHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred hcCCcH--HHH---HHHHhhCCccceEEEEeCCCCH--HHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH--HH
Confidence 632211 111 1223345678999999999984 3334333222222222 1111 1111222222211111 11
Q ss_pred HHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhcc
Q 000114 715 RFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (2158)
Q Consensus 715 ~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~ 794 (2158)
+...+.. +......+++||||++++.|..++..|...+
T Consensus 320 ~~~~l~~-----~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~------------------------------------- 357 (479)
T 3fmp_B 320 KFQALCN-----LYGAITIAQAMIFCHTRKTASWLAAELSKEG------------------------------------- 357 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-----HHhhccCCceEEEeCcHHHHHHHHHHHHhCC-------------------------------------
Confidence 1111111 1222335789999999999999998887532
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCC
Q 000114 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2158)
Q Consensus 795 ~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2158)
.++.++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+++.|.++ ..+.+..+|+||+|||||.
T Consensus 358 ~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~----~~~~s~~~~~Qr~GRagR~ 433 (479)
T 3fmp_B 358 HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK----DGNPDNETYLHRIGRTGRF 433 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCC----ccCCCHHHHHHHhcccccC
Confidence 357788999999999999999999999999999999999999999999995544433 2345788999999999997
Q ss_pred CCCCccEEEEEcCCCcHHHHH
Q 000114 875 QYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 875 g~d~~G~~iil~~~~~~~~y~ 895 (2158)
| ..|.|+++++..+...+.
T Consensus 434 g--~~G~~i~~~~~~~~~~~~ 452 (479)
T 3fmp_B 434 G--KRGLAVNMVDSKHSMNIL 452 (479)
T ss_dssp ---------------------
T ss_pred C--CCceEEEEEcCcchHHHH
Confidence 7 679999999876644433
No 31
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=9.5e-39 Score=417.79 Aligned_cols=366 Identities=16% Similarity=0.197 Sum_probs=159.2
Q ss_pred CCCCcCCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcCC
Q 000114 1311 PPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASET 1388 (2158)
Q Consensus 1311 ~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~ 1388 (2158)
.++.++.++.+++...|.+..++.++. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|++..+.....
T Consensus 83 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~- 161 (479)
T 3fmp_B 83 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK- 161 (479)
T ss_dssp STTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSC-
T ss_pred CCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCC-
Confidence 445566777888888888888898887 8999999999999999975 5789999999999999999999988866333
Q ss_pred CceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEE
Q 000114 1389 GVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLF 1468 (2158)
Q Consensus 1389 ~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~ll 1468 (2158)
++++|||+|+++|+.|+++.+++......+..+....|+...........+|+|+||+++..++.+.. ...++++++|
T Consensus 162 -~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~i 239 (479)
T 3fmp_B 162 -YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKVF 239 (479)
T ss_dssp -SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-CCCGGGCCEE
T ss_pred -CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcC-CcCcccCCEE
Confidence 33899999999999999999884333234677888887766554444566999999999988876532 3356899999
Q ss_pred EecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCC-cccccEEEEec
Q 000114 1469 IIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGV-RPVPLEIHIQG 1546 (2158)
Q Consensus 1469 IiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~-rpv~l~~~i~~ 1546 (2158)
||||+|.+.+..| ...++..+...++.+.|+|++|||+++. ..++..+.... ..+...... ....+...+..
T Consensus 240 ViDEah~~~~~~~-----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~ 313 (479)
T 3fmp_B 240 VLDEADVMIATQG-----HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKREEETLDTIKQYYVL 313 (479)
T ss_dssp EECCHHHHHTSTT-----HHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSE-EEEEEC---------------
T ss_pred EEECHHHHhhcCC-----cHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCC-eEEeccccccCcCCceEEEEE
Confidence 9999999876433 3334445555667789999999999873 23443332221 111111110 01011100000
Q ss_pred ccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHH
Q 000114 1547 VDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE 1626 (2158)
Q Consensus 1547 ~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~ 1626 (2158)
... ... .......+... ...+++||||++++.|..++..|..
T Consensus 314 ~~~--~~~-----~~~~l~~~~~~-~~~~~~lvF~~s~~~~~~l~~~L~~------------------------------ 355 (479)
T 3fmp_B 314 CSS--RDE-----KFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSK------------------------------ 355 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCC--HHH-----HHHHHHHHHhh-ccCCceEEEeCcHHHHHHHHHHHHh------------------------------
Confidence 000 000 00011111122 3457899999999999888865521
Q ss_pred HHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHh
Q 000114 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706 (2158)
Q Consensus 1627 ~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr 1706 (2158)
.+.++.++||+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| .|+.........+..+|+||
T Consensus 356 -----~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI----~~d~p~~~~~~~s~~~~~Qr 426 (479)
T 3fmp_B 356 -----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI----NFDLPVDKDGNPDNETYLHR 426 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEE----EecCCCCCccCCCHHHHHHH
Confidence 245689999999999999999999999999999999999999999999998 23322111112567899999
Q ss_pred hccCCCCCCCCceEEEEEecCChHHHHH
Q 000114 1707 MGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1707 ~GRaGR~g~d~~G~~iil~~~~~~~~~~ 1734 (2158)
+|||||.| ..|.|++++.......+.
T Consensus 427 ~GRagR~g--~~G~~i~~~~~~~~~~~~ 452 (479)
T 3fmp_B 427 IGRTGRFG--KRGLAVNMVDSKHSMNIL 452 (479)
T ss_dssp ----------------------------
T ss_pred hcccccCC--CCceEEEEEcCcchHHHH
Confidence 99999986 789999999876544333
No 32
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=399.47 Aligned_cols=340 Identities=19% Similarity=0.329 Sum_probs=244.4
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.+++++.+.+ .||..|+++|.++++.++.+.+ ++++||||||||++|++++++.+.... .+.++||++|
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P 116 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYD-VIAQAQSGTGKTATFAISILQQIELDL--------KATQALVLAP 116 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCC-EEECCCSCSSSHHHHHHHHHHHCCTTS--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCC-EEEECCCCCcccHHHHHHHHHHHhhcC--------CceeEEEEeC
Confidence 4567777766 6899999999999999988754 999999999999999999998875431 3458999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh----hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
+++|+.|+++.+.+++...++.+..++|+....... ...++|+|+||+++ +.+.+.. ..+..+++|||||||
T Consensus 117 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~~~vViDEah 193 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY---LSPKYIKMFVLDEAD 193 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS---SCSTTCCEEEECSHH
T ss_pred hHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cccccCcEEEEECHH
Confidence 999999999999998888889999999987654432 25789999999997 5555433 345678999999999
Q ss_pred cccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecC--CcccccceeEEEeeccC
Q 000114 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN--SYRPVPLSQQYIGIQVK 710 (2158)
Q Consensus 634 ~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~--~~rpv~l~~~~~~~~~~ 710 (2158)
.+.+ .++..+..++ .......|++++|||++ .++..+.......+...... ...+..+.+.+......
T Consensus 194 ~~~~~~~~~~~~~~~-------~~~~~~~~~i~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (414)
T 3eiq_A 194 EMLSRGFKDQIYDIF-------QKLNSNTQVVLLSATMP--SDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 264 (414)
T ss_dssp HHHHTTTHHHHHHHH-------TTSCTTCEEEEECSCCC--HHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS
T ss_pred HhhccCcHHHHHHHH-------HhCCCCCeEEEEEEecC--HHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH
Confidence 8865 4555554443 33467899999999987 34555554433333332221 12222333333333222
Q ss_pred ChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 711 ~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
. .+...+ ..+......+++||||++++.+..++..|...+
T Consensus 265 ~--~~~~~l-----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~--------------------------------- 304 (414)
T 3eiq_A 265 E--WKLDTL-----CDLYETLTITQAVIFINTRRKVDWLTEKMHARD--------------------------------- 304 (414)
T ss_dssp T--THHHHH-----HHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTT---------------------------------
T ss_pred H--hHHHHH-----HHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcC---------------------------------
Confidence 1 122222 223344456799999999999999999887532
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcc
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2158)
.++..+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |..+|+||+||
T Consensus 305 ----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~----~~~p~------s~~~~~Qr~GR 370 (414)
T 3eiq_A 305 ----FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDLPT------NRENYIHRIGR 370 (414)
T ss_dssp ----CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE----SSCCS------STHHHHHHSCC
T ss_pred ----CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE----eCCCC------CHHHhhhhcCc
Confidence 35778899999999999999999999999999999999999999999999 66554 67799999999
Q ss_pred cCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 871 AGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
|||.| ..|.|+++++..+...+.++
T Consensus 371 ~gR~g--~~g~~~~~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 371 GGRFG--RKGVAINMVTEEDKRTLRDI 395 (414)
T ss_dssp C---------CEEEEECSTHHHHHHHH
T ss_pred ccCCC--CCceEEEEEcHHHHHHHHHH
Confidence 99987 67999999999887766543
No 33
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.1e-37 Score=391.63 Aligned_cols=346 Identities=14% Similarity=0.243 Sum_probs=255.4
Q ss_pred CcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccH
Q 000114 1322 LPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1322 ~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~r 1400 (2158)
+....|.....+.++. ||..|+|+|.++++.++++ .+++++||||||||++|++|+++.+.....+. +++|++|++
T Consensus 39 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~--~~lil~Pt~ 115 (410)
T 2j0s_A 39 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG-RDVIAQSQSGTGKTATFSISVLQCLDIQVRET--QALILAPTR 115 (410)
T ss_dssp GGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSC--CEEEECSSH
T ss_pred HhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCCchHHHHHHHHHHHhhccCCc--eEEEEcCcH
Confidence 3334566777777776 7999999999999999985 45999999999999999999998876422333 899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1401 aLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+.|+++.++ .++...++++..++|+...... ....++|+|+||+++..++++. ...+.+++++|+||||++.
T Consensus 116 ~L~~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~--~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 116 ELAVQIQKGLL-ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--SLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp HHHHHHHHHHH-HHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHH-HHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC--CccHhheeEEEEccHHHHH
Confidence 99999999998 5766678899999988765421 2245699999999998887763 3456889999999999987
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCC-ce-EecC-CCCcccccEEEEecccccchHH
Q 000114 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH-GL-FNFP-PGVRPVPLEIHIQGVDITNFEA 1554 (2158)
Q Consensus 1478 ~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~-~i-~~f~-~~~rpv~l~~~i~~~~~~~~~~ 1554 (2158)
+.. +...+..+...++...+++++|||+++. +.+++..... .. +... ....+..+...+........
T Consensus 193 ~~~------~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 262 (410)
T 2j0s_A 193 NKG------FKEQIYDVYRYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEW-- 262 (410)
T ss_dssp STT------THHHHHHHHTTSCTTCEEEEEESCCCHH--HHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTH--
T ss_pred hhh------hHHHHHHHHHhCccCceEEEEEcCCCHH--HHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHh--
Confidence 544 2234444555567789999999999752 2232221111 11 1111 11112222222222221111
Q ss_pred HHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1555 RMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1555 ~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
.. ..+..+... ...+++||||++++.+..++..|.. .+.
T Consensus 263 k~-----~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~ 301 (410)
T 2j0s_A 263 KF-----DTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRE-----------------------------------ANF 301 (410)
T ss_dssp HH-----HHHHHHHHH-HTSSEEEEECSSHHHHHHHHHHHHH-----------------------------------TTC
T ss_pred HH-----HHHHHHHHh-cCCCcEEEEEcCHHHHHHHHHHHHh-----------------------------------CCC
Confidence 11 111222222 3456899999999999998876632 245
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
++..+||+++..+|..+++.|++|..+|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.|
T Consensus 302 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi----------~~~~p~s~~~~~Qr~GR~gR~g 371 (410)
T 2j0s_A 302 TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII----------NYDLPNNRELYIHRIGRSGRYG 371 (410)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE----------ESSCCSSHHHHHHHHTTSSGGG
T ss_pred ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEE----------EECCCCCHHHHHHhcccccCCC
Confidence 689999999999999999999999999999999999999999999999 5667788999999999999987
Q ss_pred CCCceEEEEEecCChHHHHHHH
Q 000114 1715 LDNSGKCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~k~ 1736 (2158)
..|.|++++...+...++++
T Consensus 372 --~~g~~~~~~~~~~~~~~~~i 391 (410)
T 2j0s_A 372 --RKGVAINFVKNDDIRILRDI 391 (410)
T ss_dssp --CCEEEEEEEEGGGHHHHHHH
T ss_pred --CceEEEEEecHHHHHHHHHH
Confidence 78999999998876655443
No 34
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=8.6e-37 Score=388.64 Aligned_cols=339 Identities=20% Similarity=0.254 Sum_probs=249.8
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++.+...+ .||.+|+|+|.++++.++.+ .+++++||||+|||++|+++++..+.... .+.++||++|
T Consensus 14 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~P 84 (391)
T 1xti_A 14 LLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCH 84 (391)
T ss_dssp CCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTT-CCEEEECSSCSSHHHHHHHHHHHHCCCCT--------TCCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHhhcccC--------CCeeEEEECC
Confidence 3566666666 58999999999999998876 55999999999999999999998864321 3458999999
Q ss_pred cHHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh----hccccEEEcchhHHHHHHhccCCCccccccceEEeeccc
Q 000114 559 MKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
+++|+.|+++.+.++.... ++++..++|+....... ...++|+|+||+++..+.+... ..+.++++||+||||
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~vViDEaH 162 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS--LNLKHIKHFILDECD 162 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS--SCCTTCSEEEECSHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC--ccccccCEEEEeCHH
Confidence 9999999999999887655 78999999987654432 1347999999999855554432 356789999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE-ecCCc--ccccceeEEEeeccC
Q 000114 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSY--RPVPLSQQYIGIQVK 710 (2158)
Q Consensus 634 ~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~-f~~~~--rpv~l~~~~~~~~~~ 710 (2158)
++.+..+ +...+.++ ....+...+++++|||+++. +..++......+... ..... ....+...+......
T Consensus 163 ~~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (391)
T 1xti_A 163 KMLEQLD--MRRDVQEI---FRMTPHEKQVMMFSATLSKE--IRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN 235 (391)
T ss_dssp HHTSSHH--HHHHHHHH---HHTSCSSSEEEEEESSCCST--HHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGG
T ss_pred HHhhccc--hHHHHHHH---HhhCCCCceEEEEEeeCCHH--HHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCch
Confidence 9875311 11122222 23345688999999999863 222222211222222 22222 122333344333222
Q ss_pred ChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 711 ~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
.+...+. .+.....++++||||++++.+..++..|...+
T Consensus 236 ---~~~~~l~-----~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~--------------------------------- 274 (391)
T 1xti_A 236 ---EKNRKLF-----DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN--------------------------------- 274 (391)
T ss_dssp ---GHHHHHH-----HHHHHSCCSEEEEECSCHHHHHHHHHHHHHTT---------------------------------
T ss_pred ---hHHHHHH-----HHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCC---------------------------------
Confidence 2222221 22333467899999999999999999987643
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcc
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2158)
..+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ |+++. |..+|+||+||
T Consensus 275 ----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----~~~p~------s~~~~~Qr~GR 340 (391)
T 1xti_A 275 ----FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMPE------DSDTYLHRVAR 340 (391)
T ss_dssp ----CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE----SSCCS------SHHHHHHHHCB
T ss_pred ----CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE----eCCCC------CHHHHHHhccc
Confidence 23677899999999999999999999999999999999999999999999 66664 78899999999
Q ss_pred cCCCCCCCccEEEEEcCCCcHHHH
Q 000114 871 AGRPQYDSYGEGIIITGHSELRYY 894 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y 894 (2158)
|||.| ..|.++++++..+...+
T Consensus 341 ~~R~g--~~g~~~~~~~~~~~~~~ 362 (391)
T 1xti_A 341 AGRFG--TKGLAITFVSDENDAKI 362 (391)
T ss_dssp CSSSC--CCCEEEEEECSHHHHHH
T ss_pred ccCCC--CceEEEEEEcccchHHH
Confidence 99987 67999999988654433
No 35
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.2e-36 Score=387.45 Aligned_cols=348 Identities=18% Similarity=0.268 Sum_probs=253.2
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCC-CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~-~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
.|+....+.++. ||..|+|+|.++++.++.++ .+++++||||||||++|+++++..+.....++ +++|++|+++|+
T Consensus 11 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~~L~ 88 (395)
T 3pey_A 11 GLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASP--QAICLAPSRELA 88 (395)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSC--CEEEECSSHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCc--cEEEECCCHHHH
Confidence 456677777776 79999999999999999863 77999999999999999999998886633333 899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
.|+++.++ .++...++.+....|+..... ....++|+|+||+++..++++ ....+++++++|+||||++.+..+
T Consensus 89 ~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~~-- 162 (395)
T 3pey_A 89 RQTLEVVQ-EMGKFTKITSQLIVPDSFEKN-KQINAQVIVGTPGTVLDLMRR--KLMQLQKIKIFVLDEADNMLDQQG-- 162 (395)
T ss_dssp HHHHHHHH-HHTTTSCCCEEEESTTSSCTT-SCBCCSEEEECHHHHHHHHHT--TCBCCTTCCEEEEETHHHHHHSTT--
T ss_pred HHHHHHHH-HHhcccCeeEEEEecCchhhh-ccCCCCEEEEcHHHHHHHHHc--CCcccccCCEEEEEChhhhcCccc--
Confidence 99999998 566556778888887654332 234679999999999887765 234578899999999999876432
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChH
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~ 1562 (2158)
+...+..+...++.+.+++++|||+++. ..+..++......+...........+........ ...... .
T Consensus 163 ---~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~ 232 (395)
T 3pey_A 163 ---LGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCK--NEADKF-----D 232 (395)
T ss_dssp ---HHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECS--SHHHHH-----H
T ss_pred ---cHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcC--chHHHH-----H
Confidence 2333444445557789999999999863 4455544433222211111112222222222111 111111 1
Q ss_pred HHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCC
Q 000114 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2158)
Q Consensus 1563 ~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~ 1642 (2158)
....+... ...+++||||++++.|+.++..|.. .+..+..+||+
T Consensus 233 ~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~-----------------------------------~~~~~~~~~~~ 276 (395)
T 3pey_A 233 VLTELYGL-MTIGSSIIFVATKKTANVLYGKLKS-----------------------------------EGHEVSILHGD 276 (395)
T ss_dssp HHHHHHTT-TTSSEEEEECSCHHHHHHHHHHHHH-----------------------------------TTCCCEEECTT
T ss_pred HHHHHHHh-ccCCCEEEEeCCHHHHHHHHHHHHh-----------------------------------cCCcEEEeCCC
Confidence 11222222 3567899999999999998876632 24568999999
Q ss_pred CCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEE
Q 000114 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2158)
Q Consensus 1643 l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~i 1722 (2158)
|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| .|+.........+..+|+||+|||||.| ..|.|+
T Consensus 277 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----~~~~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~ 350 (395)
T 3pey_A 277 LQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV----NYDLPTLANGQADPATYIHRIGRTGRFG--RKGVAI 350 (395)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEE----ESSCCBCTTSSBCHHHHHHHHTTSSCTT--CCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEE----EcCCCCCCcCCCCHHHhhHhccccccCC--CCceEE
Confidence 9999999999999999999999999999999999999999 2332222223348999999999999987 689999
Q ss_pred EEecCChHHHH
Q 000114 1723 ILCHAPRKEYY 1733 (2158)
Q Consensus 1723 il~~~~~~~~~ 1733 (2158)
+++...+...+
T Consensus 351 ~~~~~~~~~~~ 361 (395)
T 3pey_A 351 SFVHDKNSFNI 361 (395)
T ss_dssp EEECSHHHHHH
T ss_pred EEEechHHHHH
Confidence 99987654433
No 36
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8e-37 Score=408.15 Aligned_cols=364 Identities=17% Similarity=0.241 Sum_probs=263.4
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhc--CCCceEEEEEcccHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~--~~~~~~~v~IaP~raL 1402 (2158)
|.....+.+.. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|++..+.... ...++++|||+||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 55566666655 7999999999999999953 567999999999999999999999887642 1223589999999999
Q ss_pred HHHHHHHHHHHhcC---CCCcEEEEEcCCcchhh--hcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccc
Q 000114 1403 AKERYRDWEIKFGQ---GLGMRVVELTGETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475 (2158)
Q Consensus 1403 a~q~~~~~~~~f~~---~~g~~v~~ltG~~~~~~--~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~ 1475 (2158)
+.|+++.+++.+.. .....+..+.|+..... ..+ ..++|+|+||+++..++.+.. ...++++++|||||||+
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc-ccccccCCEEEEEChHH
Confidence 99999999964421 12456777777765432 222 257999999999988877642 33578899999999999
Q ss_pred ccCCC-CChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEe-cCCCCcc---cccEEEEecccc
Q 000114 1476 IGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFN-FPPGVRP---VPLEIHIQGVDI 1549 (2158)
Q Consensus 1476 l~~~~-g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~-f~~~~rp---v~l~~~i~~~~~ 1549 (2158)
+.+++ ++.++.++..+.......+...+++++|||+++. ..+..++......++. ......+ ..+...... .
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 264 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI--S 264 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE--E
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEE--e
Confidence 98763 5666667766665544445578999999999873 5555555443322221 1111111 111111111 1
Q ss_pred cchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHH
Q 000114 1550 TNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (2158)
Q Consensus 1550 ~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (2158)
.................+... .++.++||||+|++.|+.++..|.....
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~------------------------------ 313 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFK------------------------------ 313 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHT------------------------------
T ss_pred cchhhhHHHHHHHHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhc------------------------------
Confidence 111112111111222222222 4577899999999999999976643110
Q ss_pred HHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhcc
Q 000114 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709 (2158)
Q Consensus 1630 ~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GR 1709 (2158)
.+..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| ++..|.++.+|+||+||
T Consensus 314 --~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI----------~~~~p~s~~~y~Qr~GR 381 (579)
T 3sqw_A 314 --KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVL----------QIGVPSELANYIHRIGR 381 (579)
T ss_dssp --TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEE----------EESCCSSTTHHHHHHTT
T ss_pred --CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEE----------EcCCCCCHHHhhhhccc
Confidence 145689999999999999999999999999999999999999999999999 56677889999999999
Q ss_pred CCCCCCCCceEEEEEecCChHHHHHHHhh
Q 000114 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1710 aGR~g~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
|||.| ..|.|++++...+..+++.+..
T Consensus 382 agR~g--~~g~~i~~~~~~e~~~~~~l~~ 408 (579)
T 3sqw_A 382 TARSG--KEGSSVLFICKDELPFVRELED 408 (579)
T ss_dssp SSCTT--CCEEEEEEEEGGGHHHHHHHHH
T ss_pred cccCC--CCceEEEEEcccHHHHHHHHHH
Confidence 99987 6899999999988777776643
No 37
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=390.90 Aligned_cols=344 Identities=16% Similarity=0.210 Sum_probs=247.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCC----------------C
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET----------------G 1389 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~----------------~ 1389 (2158)
|.....+.+.. ||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+...... .
T Consensus 22 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2i4i_A 22 MGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQ 100 (417)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSB
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccC
Confidence 45556666655 7999999999999999875 5599999999999999999999887653211 1
Q ss_pred ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhcccccccee
Q 000114 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466 (2158)
Q Consensus 1390 ~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~ 1466 (2158)
.+++||++|+++|+.|+++.+++ +....++++..++|+..... .....++|+|+||+++..++... ...+.+++
T Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~ 177 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQIYEEARK-FSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG--KIGLDFCK 177 (417)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHH-HHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--SBCCTTCC
T ss_pred CccEEEECCcHHHHHHHHHHHHH-HhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC--CcChhhCc
Confidence 24799999999999999999984 55556888999999876542 22345799999999998877653 34578899
Q ss_pred EEEecccccccCCCCChHHHHHHHHHHHHhh--cC--CCceEEEeccCCCCh-HHHH-HHhccCCCceEecCCCCccccc
Q 000114 1467 LFIIDELHLIGGQGGPVLEVIVSRMRYIASQ--VE--NKIRIVALSTSLANA-KDLG-EWIGATSHGLFNFPPGVRPVPL 1540 (2158)
Q Consensus 1467 llIiDEaH~l~~~~g~~~e~~isrl~~i~~~--~~--~~~riV~lSATl~n~-~dl~-~wl~~~~~~i~~f~~~~rpv~l 1540 (2158)
++|+||||++.+.. +... +..+... .+ ...+++++|||+++. ..+. .|++.. ..+........+..+
T Consensus 178 ~iViDEah~~~~~~---~~~~---~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i 250 (417)
T 2i4i_A 178 YLVLDEADRMLDMG---FEPQ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEY-IFLAVGRVGSTSENI 250 (417)
T ss_dssp EEEESSHHHHHHTT---CHHH---HHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSC-EEEEEC----CCSSE
T ss_pred EEEEEChhHhhccC---cHHH---HHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCC-EEEEeCCCCCCccCc
Confidence 99999999987643 2222 2233221 12 267899999999763 3333 344322 111111111112222
Q ss_pred EEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhH
Q 000114 1541 EIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFI 1620 (2158)
Q Consensus 1541 ~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~ 1620 (2158)
...+......... .....+......++++||||++++.|+.++..|..
T Consensus 251 ~~~~~~~~~~~~~--------~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~------------------------ 298 (417)
T 2i4i_A 251 TQKVVWVEESDKR--------SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH------------------------ 298 (417)
T ss_dssp EEEEEECCGGGHH--------HHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHH------------------------
T ss_pred eEEEEEeccHhHH--------HHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH------------------------
Confidence 2222222211111 11222233324577899999999999998866632
Q ss_pred hhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCH
Q 000114 1621 DNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPV 1700 (2158)
Q Consensus 1621 ~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~ 1700 (2158)
.+..+..+||+|+.++|..+++.|++|+.+|||||+++++|+|+|++.+|| ++..|.+.
T Consensus 299 -----------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi----------~~~~p~s~ 357 (417)
T 2i4i_A 299 -----------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI----------NFDLPSDI 357 (417)
T ss_dssp -----------TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEE----------ESSCCSSH
T ss_pred -----------CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEE----------EEcCCCCH
Confidence 245689999999999999999999999999999999999999999999999 56677899
Q ss_pred HHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHH
Q 000114 1701 TDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1701 ~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~ 1736 (2158)
.+|+||+|||||.| ..|.|++++...+...++++
T Consensus 358 ~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~l 391 (417)
T 2i4i_A 358 EEYVHRIGRTGRVG--NLGLATSFFNERNINITKDL 391 (417)
T ss_dssp HHHHHHHTTBCC----CCEEEEEEECGGGGGGHHHH
T ss_pred HHHHHhcCccccCC--CCceEEEEEccccHHHHHHH
Confidence 99999999999987 67999999988765554443
No 38
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.9e-37 Score=384.25 Aligned_cols=335 Identities=21% Similarity=0.355 Sum_probs=253.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+...+ .||.+|+|+|.++++.++.++.+++++||||||||++|+++++..+... .+.++||++|+
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---------~~~~~lil~P~ 83 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGIEAIILTPT 83 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSCCEEEECSC
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---------CCCcEEEEcCC
Confidence 567777766 6899999999999999999877899999999999999999999876532 34589999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
++|+.|+++.+.+.+...++++..++|+...... ....++|+|+||+++....... ...+.++++||+||||.+.+
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRG--TLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTT--CSCTTSCCEEEEETHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcC--CcccccCCEEEEeCchHhhh
Confidence 9999999999999988888899999998765442 2457899999999974433332 13467899999999999876
Q ss_pred -CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHH
Q 000114 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 638 -~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2158)
.+...+..++ .......+++++|||+++ .+..++........+.. ...+..+...+...... .+.
T Consensus 162 ~~~~~~~~~~~-------~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~ 227 (367)
T 1hv8_A 162 MGFIKDVEKIL-------NACNKDKRILLFSATMPR--EILNLAKKYMGDYSFIK--AKINANIEQSYVEVNEN---ERF 227 (367)
T ss_dssp TTTHHHHHHHH-------HTSCSSCEEEEECSSCCH--HHHHHHHHHCCSEEEEE--CCSSSSSEEEEEECCGG---GHH
T ss_pred hchHHHHHHHH-------HhCCCCceEEEEeeccCH--HHHHHHHHHcCCCeEEE--ecCCCCceEEEEEeChH---HHH
Confidence 3433333332 234578899999999874 33333322211212211 11222344444433322 222
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
..+... + . ..++++||||++++.+..++..|...+ .+
T Consensus 228 ~~l~~~----l-~-~~~~~~lvf~~~~~~~~~l~~~L~~~~-------------------------------------~~ 264 (367)
T 1hv8_A 228 EALCRL----L-K-NKEFYGLVFCKTKRDTKELASMLRDIG-------------------------------------FK 264 (367)
T ss_dssp HHHHHH----H-C-STTCCEEEECSSHHHHHHHHHHHHHTT-------------------------------------CC
T ss_pred HHHHHH----H-h-cCCCcEEEEECCHHHHHHHHHHHHhcC-------------------------------------CC
Confidence 222211 1 1 236789999999999999999887642 35
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ |+++. |..+|+||+|||||.|
T Consensus 265 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~~~------s~~~~~Q~~GR~~R~g- 333 (367)
T 1hv8_A 265 AGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHLPQ------NPESYMHRIGRTGRAG- 333 (367)
T ss_dssp EEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSCCS------CHHHHHHHSTTTCCSS-
T ss_pred eEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE----ecCCC------CHHHhhhcccccccCC-
Confidence 778899999999999999999999999999999999999999999999 66554 7889999999999987
Q ss_pred CCccEEEEEcCCCcHHHHHH
Q 000114 877 DSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 877 d~~G~~iil~~~~~~~~y~~ 896 (2158)
..|.++++++..+...+..
T Consensus 334 -~~g~~~~~~~~~~~~~~~~ 352 (367)
T 1hv8_A 334 -KKGKAISIINRREYKKLRY 352 (367)
T ss_dssp -SCCEEEEEECTTSHHHHHH
T ss_pred -CccEEEEEEcHHHHHHHHH
Confidence 5699999999888766554
No 39
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.6e-36 Score=382.45 Aligned_cols=343 Identities=20% Similarity=0.243 Sum_probs=255.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|+....+.++. ||..|+|+|.++++.+++++ +++++||||||||++|++|++..+.....+. +++|++|+++|+.
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~~L~~ 103 (400)
T 1s2m_A 27 YLKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTLEKVKPKLNKI--QALIMVPTRELAL 103 (400)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTC-CEEEECCTTSCHHHHHHHHHHHHCCTTSCSC--CEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCcHHHHHHHHHHHHHHhhccCCc--cEEEEcCCHHHHH
Confidence 456677778876 79999999999999999864 5999999999999999999998876532333 8999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+++.+++ +....++++..++|+..... .....++|+|+||+++..++.+ ....+.+++++|+||||++.+..
T Consensus 104 q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~- 179 (400)
T 1s2m_A 104 QTSQVVRT-LGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSRD- 179 (400)
T ss_dssp HHHHHHHH-HTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSHH-
T ss_pred HHHHHHHH-HhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh--CCcccccCCEEEEeCchHhhhhc-
Confidence 99999994 55555888999999876542 2335679999999999877655 23457889999999999886532
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhc
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~ 1559 (2158)
+...+..+...++...+++++|||++.. ..+..+++.. .............+............ .
T Consensus 180 -----~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~k---~--- 246 (400)
T 1s2m_A 180 -----FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKP--YEINLMEELTLKGITQYYAFVEERQK---L--- 246 (400)
T ss_dssp -----HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSC--EEESCCSSCBCTTEEEEEEECCGGGH---H---
T ss_pred -----hHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCC--eEEEeccccccCCceeEEEEechhhH---H---
Confidence 2333444555566789999999999752 2233333322 11222222222223322222211111 1
Q ss_pred ChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEe
Q 000114 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (2158)
Q Consensus 1560 ~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~ 1639 (2158)
.....+... ...+++||||++++.++.++..|.. .+.++..+
T Consensus 247 --~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~ 288 (400)
T 1s2m_A 247 --HCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITD-----------------------------------LGYSCYYS 288 (400)
T ss_dssp --HHHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHH-----------------------------------HTCCEEEE
T ss_pred --HHHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHh-----------------------------------cCCCeEEe
Confidence 112222233 4567899999999999998866632 35678999
Q ss_pred cCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCce
Q 000114 1640 HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSG 1719 (2158)
Q Consensus 1640 H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G 1719 (2158)
||+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|
T Consensus 289 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi----------~~~~p~s~~~~~Qr~GR~gR~g--~~g 356 (400)
T 1s2m_A 289 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI----------NFDFPKTAETYLHRIGRSGRFG--HLG 356 (400)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE----------ESSCCSSHHHHHHHHCBSSCTT--CCE
T ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE----------EeCCCCCHHHHHHhcchhcCCC--CCc
Confidence 9999999999999999999999999999999999999999999 4566778999999999999987 689
Q ss_pred EEEEEecCChHHHHHHHhh
Q 000114 1720 KCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1720 ~~iil~~~~~~~~~~k~l~ 1738 (2158)
.|++++...+...++++..
T Consensus 357 ~~~~l~~~~~~~~~~~i~~ 375 (400)
T 1s2m_A 357 LAINLINWNDRFNLYKIEQ 375 (400)
T ss_dssp EEEEEECGGGHHHHHHHHH
T ss_pred eEEEEeccchHHHHHHHHH
Confidence 9999999887766665543
No 40
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=8.2e-37 Score=403.92 Aligned_cols=336 Identities=18% Similarity=0.251 Sum_probs=249.8
Q ss_pred ChhhHhhc---CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 483 PEWAQPAF---KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 483 p~~~~~~f---~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
++.+...+ .||.+|+|+|.++++.++.+++ ++++||||+|||++|++|++.. ..++|||+|+
T Consensus 29 ~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d-~lv~~pTGsGKTl~~~lpal~~--------------~g~~lVisP~ 93 (591)
T 2v1x_A 29 SGKVKDILQNVFKLEKFRPLQLETINVTMAGKE-VFLVMPTGGGKSLCYQLPALCS--------------DGFTLVICPL 93 (591)
T ss_dssp HHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCC-EEEECCTTSCTTHHHHHHHHTS--------------SSEEEEECSC
T ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCC-EEEEECCCChHHHHHHHHHHHc--------------CCcEEEEeCH
Confidence 34444444 4899999999999999998755 9999999999999999999752 1289999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---------hccccEEEcchhHHH---HHHhccCCCccccccceE
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKWD---IITRKSGDRTYTQLVKLL 627 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---------~~~~~IiV~TPekld---~l~r~~~~~~~l~~v~lI 627 (2158)
++|+.|+++.+.+. |+++..++|+....... ...++|+|+|||++. .+.........+.++++|
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~i 169 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRI 169 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEE
Confidence 99999999999885 78899999987654331 347899999999862 222222112345678999
Q ss_pred Eeeccccccc---CChhhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEEecCCccccccee
Q 000114 628 IIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702 (2158)
Q Consensus 628 IiDEaH~l~d---~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~--~dv~~~l~~~~~~~~~~f~~~~rpv~l~~ 702 (2158)
||||||++.+ .+.+.+..+ ..+ ....+.+++++||||+++. .++..+++.. ....+...+....+..
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l-~~l----~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~---~~~~~~~~~~r~nl~~ 241 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKAL-GIL----KRQFPNASLIGLTATATNHVLTDAQKILCIE---KCFTFTASFNRPNLYY 241 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGG-GHH----HHHCTTSEEEEEESSCCHHHHHHHHHHTTCC---SCEEEECCCCCTTEEE
T ss_pred EEECcccccccccccHHHHHHH-HHH----HHhCCCCcEEEEecCCCHHHHHHHHHHhCCC---CcEEEecCCCCcccEE
Confidence 9999999875 245555432 111 1234578999999998853 5666777643 2233444444434433
Q ss_pred EEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh
Q 000114 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (2158)
Q Consensus 703 ~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 782 (2158)
.+.... ........ .+.+.+.....++++||||+|++.++.++..|...+
T Consensus 242 ~v~~~~-~~~~~~~~----~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g------------------------- 291 (591)
T 2v1x_A 242 EVRQKP-SNTEDFIE----DIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG------------------------- 291 (591)
T ss_dssp EEEECC-SSHHHHHH----HHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT-------------------------
T ss_pred EEEeCC-CcHHHHHH----HHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC-------------------------
Confidence 332211 11111111 222223223346799999999999999999997643
Q ss_pred ccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHH
Q 000114 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2158)
Q Consensus 783 ~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2158)
.++..+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |+.
T Consensus 292 ------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~----~~~p~------s~~ 349 (591)
T 2v1x_A 292 ------------IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH----HSMSK------SME 349 (591)
T ss_dssp ------------CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE----SSCCS------SHH
T ss_pred ------------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE----eCCCC------CHH
Confidence 34778899999999999999999999999999999999999999999999 77775 889
Q ss_pred HHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhc
Q 000114 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (2158)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 899 (2158)
+|+||+|||||.| ..|.|+++++..+...+..++.
T Consensus 350 ~y~Qr~GRaGR~G--~~g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 350 NYYQESGRAGRDD--MKADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp HHHHHHTTSCTTS--SCEEEEEEECHHHHHHHHHHTT
T ss_pred HHHHHhccCCcCC--CCceEEEEEChHHHHHHHHHHh
Confidence 9999999999987 6799999999888777766654
No 41
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.5e-36 Score=399.31 Aligned_cols=333 Identities=18% Similarity=0.259 Sum_probs=250.4
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+...| ||..|+|+|.++++.++.+++ +++.+|||+|||+||++|++. ..+ ++|||+|+++|+.|+++.++
T Consensus 36 L~~~f-g~~~~rp~Q~~~i~~il~g~d-~lv~~pTGsGKTl~~~lpal~------~~g--~~lVisP~~~L~~q~~~~l~ 105 (591)
T 2v1x_A 36 LQNVF-KLEKFRPLQLETINVTMAGKE-VFLVMPTGGGKSLCYQLPALC------SDG--FTLVICPLISLMEDQLMVLK 105 (591)
T ss_dssp HHHTS-CCCSCCTTHHHHHHHHHTTCC-EEEECCTTSCTTHHHHHHHHT------SSS--EEEEECSCHHHHHHHHHHHH
T ss_pred HHHHh-CCCCCCHHHHHHHHHHHcCCC-EEEEECCCChHHHHHHHHHHH------cCC--cEEEEeCHHHHHHHHHHHHH
Confidence 33433 599999999999999998654 999999999999999999983 244 89999999999999999998
Q ss_pred HHhcCCCCcEEEEEcCCcchhhh---------cccCCcEEEeCHHHHH---HHHhhhhccccccceeEEEecccccccCC
Q 000114 1412 IKFGQGLGMRVVELTGETAMDLK---------LLEKGQIIISTPEKWD---ALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~~~~~~---------~l~~~~IIV~TPe~l~---~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
+ + |+++..++|+...... .....+|+|+|||++. .+...+.....+.++++|||||||++.++
T Consensus 106 ~-~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~ 180 (591)
T 2v1x_A 106 Q-L----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQW 180 (591)
T ss_dssp H-H----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTT
T ss_pred h-c----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccc
Confidence 4 4 6788999998765422 1245699999999884 34443333345678999999999999754
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHH
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~ 1557 (2158)
|+.+...+..+..+... .++.++++||||+++. .++..|++......+. .......+...+...... ..
T Consensus 181 -g~dfr~~~~~l~~l~~~-~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v~~~~~~-~~---- 251 (591)
T 2v1x_A 181 -GHDFRPDYKALGILKRQ-FPNASLIGLTATATNHVLTDAQKILCIEKCFTFT--ASFNRPNLYYEVRQKPSN-TE---- 251 (591)
T ss_dssp -CTTCCGGGGGGGHHHHH-CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE--CCCCCTTEEEEEEECCSS-HH----
T ss_pred -ccccHHHHHHHHHHHHh-CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe--cCCCCcccEEEEEeCCCc-HH----
Confidence 33333333333333333 3478999999999873 6788888876543333 222222333333322111 11
Q ss_pred hcChHHHHHHHHhH---hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1558 AMTKPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1558 ~~~k~~~~~i~~~~---~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
.....+...+ .+++++||||+|++.|+.++..|.. .+.
T Consensus 252 ----~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~-----------------------------------~g~ 292 (591)
T 2v1x_A 252 ----DFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQN-----------------------------------LGI 292 (591)
T ss_dssp ----HHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHH-----------------------------------TTC
T ss_pred ----HHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHH-----------------------------------CCC
Confidence 1122222222 3567899999999999999976632 245
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
++..|||+|+..+|..+++.|.+|+++|||||+++++|||+|++++|| |+..|.++.+|+||+|||||.|
T Consensus 293 ~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI----------~~~~p~s~~~y~Qr~GRaGR~G 362 (591)
T 2v1x_A 293 HAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVI----------HHSMSKSMENYYQESGRAGRDD 362 (591)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEE----------ESSCCSSHHHHHHHHTTSCTTS
T ss_pred CEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEE----------EeCCCCCHHHHHHHhccCCcCC
Confidence 689999999999999999999999999999999999999999999999 7778889999999999999987
Q ss_pred CCCceEEEEEecCChHHHHHHHhhC
Q 000114 1715 LDNSGKCVILCHAPRKEYYKKFLYD 1739 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~k~l~~ 1739 (2158)
..|.|++++...+...+..++..
T Consensus 363 --~~g~~i~l~~~~D~~~~~~~~~~ 385 (591)
T 2v1x_A 363 --MKADCILYYGFGDIFRISSMVVM 385 (591)
T ss_dssp --SCEEEEEEECHHHHHHHHHHTTT
T ss_pred --CCceEEEEEChHHHHHHHHHHhh
Confidence 68999999988777777777654
No 42
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=389.77 Aligned_cols=348 Identities=16% Similarity=0.268 Sum_probs=241.4
Q ss_pred CcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccH
Q 000114 1322 LPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1322 ~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~r 1400 (2158)
+....+.....+.+.. ||..|+|+|.++++.++.+. +++++||||||||++|++++++.+.....++ +++|++|++
T Consensus 42 f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~ 118 (414)
T 3eiq_A 42 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY-DVIAQAQSGTGKTATFAISILQQIELDLKAT--QALVLAPTR 118 (414)
T ss_dssp GGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEECCCSCSSSHHHHHHHHHHHCCTTSCSC--CEEEECSSH
T ss_pred HhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCC-CEEEECCCCCcccHHHHHHHHHHHhhcCCce--eEEEEeChH
Confidence 3334566666777765 79999999999999999855 4999999999999999999998886632333 899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh--c--ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccc
Q 000114 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK--L--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2158)
Q Consensus 1401 aLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~--~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l 1476 (2158)
+|+.|+++.+++ ++...+..+..+.|+...... . ...++|+|+||+++..++.+ ....+.++++||+||||++
T Consensus 119 ~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~~vViDEah~~ 195 (414)
T 3eiq_A 119 ELAQQIQKVVMA-LGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEM 195 (414)
T ss_dssp HHHHHHHHHHHH-HGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH--TSSCSTTCCEEEECSHHHH
T ss_pred HHHHHHHHHHHH-HhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccCcEEEEECHHHh
Confidence 999999999994 555567888888887665422 1 24569999999998877655 2345678999999999988
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHH
Q 000114 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEAR 1555 (2158)
Q Consensus 1477 ~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~ 1555 (2158)
.+.. +...+..+...++.+.+++++|||+++. ..+...+......+........+..+............ .
T Consensus 196 ~~~~------~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 267 (414)
T 3eiq_A 196 LSRG------FKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW--K 267 (414)
T ss_dssp HHTT------THHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT--H
T ss_pred hccC------cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh--H
Confidence 6543 2344445556667789999999998752 23333222222111111111122222222222211111 0
Q ss_pred HHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhccc
Q 000114 1556 MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHG 1635 (2158)
Q Consensus 1556 ~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~g 1635 (2158)
...+..+... ...+++||||++++.|..++..|.. .+.+
T Consensus 268 -----~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~-----------------------------------~~~~ 306 (414)
T 3eiq_A 268 -----LDTLCDLYET-LTITQAVIFINTRRKVDWLTEKMHA-----------------------------------RDFT 306 (414)
T ss_dssp -----HHHHHHHHHS-SCCSSCEEECSCHHHHHHHHHHHHT-----------------------------------TTCC
T ss_pred -----HHHHHHHHHh-CCCCcEEEEeCCHHHHHHHHHHHHh-----------------------------------cCCe
Confidence 0112222333 3567899999999999999876632 2456
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1636 v~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.|
T Consensus 307 ~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi----------~~~~p~s~~~~~Qr~GR~gR~g- 375 (414)
T 3eiq_A 307 VSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI----------NYDLPTNRENYIHRIGRGGRFG- 375 (414)
T ss_dssp CEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE----------ESSCCSSTHHHHHHSCCC-----
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE----------EeCCCCCHHHhhhhcCcccCCC-
Confidence 89999999999999999999999999999999999999999999999 5566778999999999999987
Q ss_pred CCceEEEEEecCChHHHHHHH
Q 000114 1716 DNSGKCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1716 d~~G~~iil~~~~~~~~~~k~ 1736 (2158)
..|.|++++...+...++++
T Consensus 376 -~~g~~~~~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 376 -RKGVAINMVTEEDKRTLRDI 395 (414)
T ss_dssp ----CEEEEECSTHHHHHHHH
T ss_pred -CCceEEEEEcHHHHHHHHHH
Confidence 67999999998877666554
No 43
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6e-36 Score=372.56 Aligned_cols=324 Identities=21% Similarity=0.311 Sum_probs=242.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
||+++.+.+ .||.+|+|+|.++++.++.+ ++++++||||+|||++|++++++. +.++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQG-KNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCC
Confidence 456666666 68999999999999998876 469999999999999999998864 1279999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
++|+.|+++.+.+.+...++++..++|+...... ....++|+|+||+++..+.... ...+.++++||+||||++.+
T Consensus 66 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 66 RELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKG--VIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTT--SCCGGGCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcC--CcchhhCcEEEEEChHHhhc
Confidence 9999999999999888888999999998765443 2456899999999984443332 23467899999999999876
Q ss_pred -CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHH
Q 000114 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 638 -~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2158)
.+...+..++. ..+...+++++|||+++ .+..++........ .......+..+...++.+..... ..
T Consensus 144 ~~~~~~~~~~~~-------~~~~~~~~~~~SAT~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~- 211 (337)
T 2z0m_A 144 MGFIDDIKIILA-------QTSNRKITGLFSATIPE--EIRKVVKDFITNYE-EIEACIGLANVEHKFVHVKDDWR-SK- 211 (337)
T ss_dssp TTCHHHHHHHHH-------HCTTCSEEEEEESCCCH--HHHHHHHHHSCSCE-EEECSGGGGGEEEEEEECSSSSH-HH-
T ss_pred cccHHHHHHHHh-------hCCcccEEEEEeCcCCH--HHHHHHHHhcCCce-eeecccccCCceEEEEEeChHHH-HH-
Confidence 45555544433 24567888999999884 33333332211211 12222333344444444333221 11
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
.. ......++++||||++++.++.++..|. .
T Consensus 212 -------~~-~~~~~~~~~~lvf~~~~~~~~~l~~~l~-----------------------------------------~ 242 (337)
T 2z0m_A 212 -------VQ-ALRENKDKGVIVFVRTRNRVAKLVRLFD-----------------------------------------N 242 (337)
T ss_dssp -------HH-HHHTCCCSSEEEECSCHHHHHHHHTTCT-----------------------------------------T
T ss_pred -------HH-HHHhCCCCcEEEEEcCHHHHHHHHHHhh-----------------------------------------h
Confidence 11 1223447899999999999988776442 2
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. |+.+|+||+|||||.|
T Consensus 243 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~~~------s~~~~~Q~~GR~gR~g- 311 (337)
T 2z0m_A 243 AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN----FDAPQ------DLRTYIHRIGRTGRMG- 311 (337)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE----SSCCS------SHHHHHHHHTTBCGGG-
T ss_pred hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE----ecCCC------CHHHhhHhcCccccCC-
Confidence 567899999999999999999999999999999999999999999998 66664 7889999999999987
Q ss_pred CCccEEEEEcCCCcHHHHHH
Q 000114 877 DSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 877 d~~G~~iil~~~~~~~~y~~ 896 (2158)
..|.+++++. .+.....+
T Consensus 312 -~~g~~~~~~~-~~~~~~~~ 329 (337)
T 2z0m_A 312 -RKGEAITFIL-NEYWLEKE 329 (337)
T ss_dssp -CCEEEEEEES-SCHHHHHH
T ss_pred -CCceEEEEEe-CcHHHHHH
Confidence 5699999988 66555444
No 44
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.8e-35 Score=376.52 Aligned_cols=337 Identities=16% Similarity=0.182 Sum_probs=248.9
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|+....+.+.. ||..|+|+|.++++.++.+ .+++++||||+|||++|++|++..+.....+ .+++|++|+++|+.|
T Consensus 15 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~--~~~lil~P~~~L~~q 91 (391)
T 1xti_A 15 LKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ--VSVLVMCHTRELAFQ 91 (391)
T ss_dssp CCHHHHHHHHHHSCCSCCHHHHHHHHHHTTT-CCEEEECSSCSSHHHHHHHHHHHHCCCCTTC--CCEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHhhcccCCC--eeEEEECCCHHHHHH
Confidence 44455556655 7999999999999999885 5599999999999999999999887653223 389999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEcCCcchhh--hcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1406 RYRDWEIKFGQG-LGMRVVELTGETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1406 ~~~~~~~~f~~~-~g~~v~~ltG~~~~~~--~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
+++.+++ +... .++++..++|+..... ..+ ..++|+|+||+++..+++.. ...+.+++++|+||||++.++.
T Consensus 92 ~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~vViDEaH~~~~~~ 168 (391)
T 1xti_A 92 ISKEYER-FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKMLEQL 168 (391)
T ss_dssp HHHHHHH-HTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--SSCCTTCSEEEECSHHHHTSSH
T ss_pred HHHHHHH-HHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC--CccccccCEEEEeCHHHHhhcc
Confidence 9999984 4433 3789999999876432 222 23599999999998887663 3357899999999999987542
Q ss_pred CChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HH-HHHHhccCCCceEecCCCC--cccccEEEEecccccchHHHH
Q 000114 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KD-LGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVDITNFEARM 1556 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~d-l~~wl~~~~~~i~~f~~~~--rpv~l~~~i~~~~~~~~~~~~ 1556 (2158)
.+...+..+....+...+++++|||+++. .. +..+++.. . .+...... ....+...+.........
T Consensus 169 -----~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 238 (391)
T 1xti_A 169 -----DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDP-M-EIFVDDETKLTLHGLQQYYVKLKDNEKN--- 238 (391)
T ss_dssp -----HHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSC-E-EEECCCCCCCCCTTCEEEEEECCGGGHH---
T ss_pred -----chHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCC-e-EEEecCccccCcccceEEEEEcCchhHH---
Confidence 13344445555566789999999999873 33 33444322 1 12222211 122233332222211111
Q ss_pred HhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccE
Q 000114 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2158)
Q Consensus 1557 ~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv 1636 (2158)
.....+... ..++++||||++++.|..++..|.. .+..+
T Consensus 239 -----~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~L~~-----------------------------------~~~~~ 277 (391)
T 1xti_A 239 -----RKLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVE-----------------------------------QNFPA 277 (391)
T ss_dssp -----HHHHHHHHH-SCCSEEEEECSCHHHHHHHHHHHHH-----------------------------------TTCCE
T ss_pred -----HHHHHHHHh-cCCCcEEEEeCcHHHHHHHHHHHHh-----------------------------------CCCcE
Confidence 111222233 3678899999999999999876632 23458
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCC
Q 000114 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2158)
Q Consensus 1637 ~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d 1716 (2158)
..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.|
T Consensus 278 ~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi----------~~~~p~s~~~~~Qr~GR~~R~g-- 345 (391)
T 1xti_A 278 IAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF----------NYDMPEDSDTYLHRVARAGRFG-- 345 (391)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEE----------ESSCCSSHHHHHHHHCBCSSSC--
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEE----------EeCCCCCHHHHHHhcccccCCC--
Confidence 8999999999999999999999999999999999999999999998 5667789999999999999987
Q ss_pred CceEEEEEecCChHHH
Q 000114 1717 NSGKCVILCHAPRKEY 1732 (2158)
Q Consensus 1717 ~~G~~iil~~~~~~~~ 1732 (2158)
..|.|++++.+.+...
T Consensus 346 ~~g~~~~~~~~~~~~~ 361 (391)
T 1xti_A 346 TKGLAITFVSDENDAK 361 (391)
T ss_dssp CCCEEEEEECSHHHHH
T ss_pred CceEEEEEEcccchHH
Confidence 7899999998765433
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.6e-37 Score=415.55 Aligned_cols=470 Identities=15% Similarity=0.168 Sum_probs=304.8
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+++.+...+ .+ ..|+++|+++++.++.++++++++||||||||+. +|++-....... ..+.+++|++|+
T Consensus 79 l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~------~~g~~ilvl~P~ 149 (773)
T 2xau_A 79 FTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPH------LENTQVACTQPR 149 (773)
T ss_dssp CCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGG------GGTCEEEEEESC
T ss_pred CCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhcccc------CCCceEEecCch
Confidence 355555555 33 6789999999999999989999999999999993 444421111100 024579999999
Q ss_pred HHHHHHHHHHHHhhcc-cCCcEEEEEeCCCccCHhhhccccEEEcchhHHH-HHHhccCCCccccccceEEeeccccccc
Q 000114 560 KALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD-IITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~-~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld-~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
++|+.|+++++...++ ..+..++.-. .........++|+++||+.+. .+... ..+.++++|||||+|.
T Consensus 150 r~La~q~~~~l~~~~~~~v~~~vG~~i---~~~~~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~lIlDEah~--- 219 (773)
T 2xau_A 150 RVAAMSVAQRVAEEMDVKLGEEVGYSI---RFENKTSNKTILKYMTDGMLLREAMED----HDLSRYSCIILDEAHE--- 219 (773)
T ss_dssp HHHHHHHHHHHHHHTTCCBTTTEEEEE---TTEEECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEEEEECSGGG---
T ss_pred HHHHHHHHHHHHHHhCCchhheeccee---ccccccCCCCCEEEECHHHHHHHHhhC----ccccCCCEEEecCccc---
Confidence 9999999998876543 2222233211 111122347899999999873 33332 4578899999999994
Q ss_pred CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHH
Q 000114 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (2158)
Q Consensus 638 ~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (2158)
|+...+.++..+.. +....+..++|++|||+ +.++++.|++.. .++.... +..|+.+.+........ ..
T Consensus 220 -R~ld~d~~~~~l~~-l~~~~~~~~iIl~SAT~-~~~~l~~~~~~~---~vi~v~g--r~~pv~~~~~~~~~~~~---~~ 288 (773)
T 2xau_A 220 -RTLATDILMGLLKQ-VVKRRPDLKIIIMSATL-DAEKFQRYFNDA---PLLAVPG--RTYPVELYYTPEFQRDY---LD 288 (773)
T ss_dssp -CCHHHHHHHHHHHH-HHHHCTTCEEEEEESCS-CCHHHHHHTTSC---CEEECCC--CCCCEEEECCSSCCSCH---HH
T ss_pred -cccchHHHHHHHHH-HHHhCCCceEEEEeccc-cHHHHHHHhcCC---CcccccC--cccceEEEEecCCchhH---HH
Confidence 22222222222211 22234578999999998 568888888632 3333333 34455554443322221 11
Q ss_pred HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCe
Q 000114 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2158)
Q Consensus 718 ~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv 797 (2158)
.....+.. +.....++++||||+++++++.++..|....... .. ........+
T Consensus 289 ~~l~~l~~-~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l----------------~~----------~~~~~~~~v 341 (773)
T 2xau_A 289 SAIRTVLQ-IHATEEAGDILLFLTGEDEIEDAVRKISLEGDQL----------------VR----------EEGCGPLSV 341 (773)
T ss_dssp HHHHHHHH-HHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHH----------------HH----------HHCCCCEEE
T ss_pred HHHHHHHH-HHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhh----------------cc----------cccCCCeEE
Confidence 11112222 2223347899999999999999999987642110 00 000113458
Q ss_pred EEecCCCCHHHHHHHHHHHh-----CCCceEEEechhhhhccCCCceEEEEeccc----ccCCCCCcc----ccCCHHHH
Q 000114 798 AIHHAGMTRGDRQLVEDLFG-----DGHVQVLVSTATLAWGVNLPAHTVIIKGTQ----IYNPEKGAW----TELSPLDI 864 (2158)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~-----~g~i~VLVaT~tla~GVdlP~v~vVI~~~~----~yd~~~g~~----~~~s~~~~ 864 (2158)
..+||+|+..+|..+++.|+ +|.++|||||+++++|||+|++++||+++. .||+..|.. .++|..+|
T Consensus 342 ~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~ 421 (773)
T 2xau_A 342 YPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASA 421 (773)
T ss_dssp EEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHH
T ss_pred EEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHH
Confidence 89999999999999999999 999999999999999999999999999654 588877633 37899999
Q ss_pred HHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHh
Q 000114 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~ 944 (2158)
+||+|||||. ..|.||++++..+.. ..+.....| | -+...|...+..-...| +.+.
T Consensus 422 ~QR~GRaGR~---~~G~~~~l~~~~~~~--~~l~~~~~p-E-i~r~~L~~~~L~l~~~g-i~~~---------------- 477 (773)
T 2xau_A 422 QQRAGRAGRT---RPGKCFRLYTEEAFQ--KELIEQSYP-E-ILRSNLSSTVLELKKLG-IDDL---------------- 477 (773)
T ss_dssp HHHHHGGGSS---SSEEEEESSCHHHHH--HTSCSSCCC-G-GGGSCCHHHHHHHHHTT-CCCG----------------
T ss_pred HhhccccCCC---CCCEEEEEecHHHhc--ccccccCCC-c-cccCcHHHHHHHHHHcC-CCCh----------------
Confidence 9999999997 579999999765431 223222222 1 12222322222222222 1111
Q ss_pred hcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCC
Q 000114 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (2158)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~ 1024 (2158)
..+. +.+.| ..+.+..|+..|...|+|+.+ | .+|++|+++|.||++|..++++..+....|
T Consensus 478 ----~~f~-----~~~~p-----~~~~i~~a~~~L~~lgald~~---~--~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c 538 (773)
T 2xau_A 478 ----VHFD-----FMDPP-----APETMMRALEELNYLACLDDE---G--NLTPLGRLASQFPLDPMLAVMLIGSFEFQC 538 (773)
T ss_dssp ----GGCC-----CSSCC-----CHHHHHHHHHHHHHTTSBCTT---S--CBCHHHHHHTTSSSCHHHHHHHHHGGGGTC
T ss_pred ----hhcc-----ccCCC-----cHHHHHHHHHHHHHcCCcccC---C--CcChhhhhhccccCCHHHHHHHHhhcccCc
Confidence 1010 01111 225688999999999999633 3 599999999999999999999998766555
Q ss_pred CHHHHHHHhhCCccCCCCcCChhHHHHHH
Q 000114 1025 GDIELCRLFSLSEEFKYVTVRQDEKMELA 1053 (2158)
Q Consensus 1025 ~~~~~l~~~s~~~ef~~i~~r~~e~~~l~ 1053 (2158)
..+++.|+|+.+ +.++.+|+.++.+..
T Consensus 539 -~~~~l~i~a~ls-~~~~f~~~~~~~~~~ 565 (773)
T 2xau_A 539 -SQEILTIVAMLS-VPNVFIRPTKDKKRA 565 (773)
T ss_dssp -HHHHHHHHHHHT-SCCCBCCCTTCHHHH
T ss_pred -hhHHHHHHHhcc-cCCcccCChHHHHHH
Confidence 356776666554 466777766554433
No 46
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-37 Score=404.65 Aligned_cols=410 Identities=13% Similarity=0.172 Sum_probs=218.0
Q ss_pred EEEEEEeccCCCCCeEEEEEecccccCCCcccccccccccCCCCCCCCCcCCCCCCCcccccChhHHHHHhc-CCCCCCH
Q 000114 1266 SLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNP 1344 (2158)
Q Consensus 1266 ~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~~~~i~~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~ 1344 (2158)
.....||+.+|+|.-....+.-..+...+..-.....+..+-..++.+.++.++.+. .+.....+.+.. ||..|++
T Consensus 68 ~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~---~l~~~~~~~l~~~g~~~p~~ 144 (508)
T 3fho_A 68 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXK 144 (508)
T ss_dssp --------------------------------------------------------------------------CEECCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccCcHH
Confidence 345678888888875543332211111111111111123333444555555555543 233344444444 6889999
Q ss_pred HHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000114 1345 IQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (2158)
Q Consensus 1345 iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~ 1423 (2158)
+|.++++.++.+ +++++++||||||||++|+++++..+.....++ ++||++|+++|+.|+++++++. ....+..+.
T Consensus 145 ~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~--~vLvl~P~~~L~~Q~~~~~~~~-~~~~~~~~~ 221 (508)
T 3fho_A 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKP--QAICLAPSRELARQIMDVVTEM-GKYTEVKTA 221 (508)
T ss_dssp TTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSC--CEEEECSCHHHHHHHHHHHHHH-STTSSCCEE
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCc--eEEEEECcHHHHHHHHHHHHHh-CCccCeeEE
Confidence 999999999986 578999999999999999999999887643333 8999999999999999999954 433455555
Q ss_pred EEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCce
Q 000114 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2158)
Q Consensus 1424 ~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~r 1503 (2158)
...|+..... ....++|+|+||+++...+.+ ....+.++++||+||||++.+..+ +..++..+...++.+.+
T Consensus 222 ~~~~~~~~~~-~~~~~~Ivv~T~~~l~~~l~~--~~~~~~~~~lIIiDEaH~~~~~~~-----~~~~~~~i~~~~~~~~~ 293 (508)
T 3fho_A 222 FGIKDSVPKG-AKIDAQIVIGTPGTVMDLMKR--RQLDARDIKVFVLDEADNMLDQQG-----LGDQSMRIKHLLPRNTQ 293 (508)
T ss_dssp C-----------CCCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEECCHHHHTTC-------CHHHHHHHHHHSCTTCE
T ss_pred EEeCCccccc-ccCCCCEEEECHHHHHHHHHc--CCccccCCCEEEEechhhhcccCC-----cHHHHHHHHHhCCcCCe
Confidence 5555433322 233679999999998877655 233578899999999999876433 23344445555677899
Q ss_pred EEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEec
Q 000114 1504 IVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVP 1582 (2158)
Q Consensus 1504 iV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~ 1582 (2158)
+|++|||+++ ...+..++......+........+..+.......... .... .....+... ...+++||||+
T Consensus 294 ~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~k~-----~~l~~ll~~-~~~~~~LVF~~ 365 (508)
T 3fho_A 294 IVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE--EHKY-----NVLVELYGL-LTIGQSIIFCK 365 (508)
T ss_dssp EEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C--HHHH-----HHHHHHHC----CCCEEEBCS
T ss_pred EEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch--HHHH-----HHHHHHHHh-cCCCcEEEEEC
Confidence 9999999987 5566665554432221111111111111111111100 0110 111222222 35689999999
Q ss_pred ChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceE
Q 000114 1583 SRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKV 1662 (2158)
Q Consensus 1583 sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~V 1662 (2158)
+++.|..++..|.. .+.++..+||+++..+|..+++.|++|+++|
T Consensus 366 s~~~a~~l~~~L~~-----------------------------------~~~~v~~~hg~~~~~~R~~il~~f~~g~~~V 410 (508)
T 3fho_A 366 KKDTAEEIARRMTA-----------------------------------DGHTVACLTGNLEGAQRDAIMDSFRVGTSKV 410 (508)
T ss_dssp STTTTTHHHHHHTT-----------------------------------TTCCCCEEC-----CTTGGGTHHHHSSSCCC
T ss_pred CHHHHHHHHHHHHh-----------------------------------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeE
Confidence 99999988866622 2456899999999999999999999999999
Q ss_pred EEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh----HHHHHHHhh
Q 000114 1663 CVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR----KEYYKKFLY 1738 (2158)
Q Consensus 1663 LVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~----~~~~~k~l~ 1738 (2158)
||||+++++|+|+|++.+|| .|+.........++.+|+||+|||||.| ..|.|++++.+.+ ...+++++.
T Consensus 411 LVaT~~l~~GiDip~v~~VI----~~~~p~~~~~~~s~~~~~Qr~GRagR~g--~~g~~i~l~~~~~~~~~~~~i~~~~~ 484 (508)
T 3fho_A 411 LVTTNVIARGIDVSQVNLVV----NYDMPLDQAGRPDPQTYLHRIGRTGRFG--RVGVSINFVHDKKSWEEMNAIQEYFQ 484 (508)
T ss_dssp CEECC-----CCCTTCCEEE----C----CC-----CTHHHHHTTSCCC-------CEEEEEECTTTSSSSHHHHHHHSC
T ss_pred EEeCChhhcCCCccCCCEEE----EECCCCcccCCCCHHHHHHHhhhcCCCC--CCcEEEEEEeChHHHHHHHHHHHHHC
Confidence 99999999999999999998 2222211222268999999999999987 6799999887543 344555554
No 47
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-35 Score=373.40 Aligned_cols=335 Identities=21% Similarity=0.334 Sum_probs=252.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|.......+.. ||..|+|+|.++++.+++++.+++++||||||||++|.++++..+.. .++ .+++|++|+++|+.|
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-~~~--~~~lil~P~~~L~~q 89 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-NNG--IEAIILTPTRELAIQ 89 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-SSS--CCEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-cCC--CcEEEEcCCHHHHHH
Confidence 45555666655 79999999999999999987789999999999999999999987765 223 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
+++.+++.++. .++++..++|+.... ...+..++|+|+||+++...+.. ....+.+++++|+||||.+.+..
T Consensus 90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~--- 163 (367)
T 1hv8_A 90 VADEIESLKGN-KNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNMG--- 163 (367)
T ss_dssp HHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTTT---
T ss_pred HHHHHHHHhCC-CCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHc--CCcccccCCEEEEeCchHhhhhc---
Confidence 99999965543 477888888877643 33455789999999999877654 23457889999999999987644
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcCh
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k 1561 (2158)
+...+..+....+...+++++|||+++. ..+..+++... .... .....+...........
T Consensus 164 ---~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~---------- 225 (367)
T 1hv8_A 164 ---FIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYS--FIKA---KINANIEQSYVEVNENE---------- 225 (367)
T ss_dssp ---THHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEE--EEEC---CSSSSSEEEEEECCGGG----------
T ss_pred ---hHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCe--EEEe---cCCCCceEEEEEeChHH----------
Confidence 3344445555567789999999999763 23344444221 1111 11112232222222111
Q ss_pred HHHHHHHHhH-hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1562 PTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1562 ~~~~~i~~~~-~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
....+...+ ..++++||||++++.+..++..|.. .+.++..+|
T Consensus 226 -~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~ 269 (367)
T 1hv8_A 226 -RFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRD-----------------------------------IGFKAGAIH 269 (367)
T ss_dssp -HHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEEC
T ss_pred -HHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHh-----------------------------------cCCCeEEee
Confidence 111222221 4567899999999999998866632 245689999
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
|+++..+|..+++.|++|+.+|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|.
T Consensus 270 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi----------~~~~~~s~~~~~Q~~GR~~R~g--~~g~ 337 (367)
T 1hv8_A 270 GDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI----------NYHLPQNPESYMHRIGRTGRAG--KKGK 337 (367)
T ss_dssp SSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE----------ESSCCSCHHHHHHHSTTTCCSS--SCCE
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE----------EecCCCCHHHhhhcccccccCC--CccE
Confidence 999999999999999999999999999999999999999998 4566789999999999999987 6789
Q ss_pred EEEEecCChHHHHHHH
Q 000114 1721 CVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1721 ~iil~~~~~~~~~~k~ 1736 (2158)
|++++...+...+..+
T Consensus 338 ~~~~~~~~~~~~~~~i 353 (367)
T 1hv8_A 338 AISIINRREYKKLRYI 353 (367)
T ss_dssp EEEEECTTSHHHHHHH
T ss_pred EEEEEcHHHHHHHHHH
Confidence 9999988776555443
No 48
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.9e-35 Score=387.58 Aligned_cols=324 Identities=17% Similarity=0.264 Sum_probs=246.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
||..|+|+|.++++.+++++ +++++||||||||+||++|++. ..+ ++|||+|+++|+.|+++.+++ +
T Consensus 22 g~~~~r~~Q~~~i~~il~g~-d~lv~apTGsGKTl~~~lp~l~------~~g--~~lvi~P~~aL~~q~~~~l~~-~--- 88 (523)
T 1oyw_A 22 GYQQFRPGQEEIIDTVLSGR-DCLVVMPTGGGKSLCYQIPALL------LNG--LTVVVSPLISLMKDQVDQLQA-N--- 88 (523)
T ss_dssp CCSSCCTTHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHH------SSS--EEEEECSCHHHHHHHHHHHHH-T---
T ss_pred CCCCCCHHHHHHHHHHHcCC-CEEEECCCCcHHHHHHHHHHHH------hCC--CEEEECChHHHHHHHHHHHHH-c---
Confidence 59999999999999999865 5999999999999999999983 134 899999999999999999883 3
Q ss_pred CCcEEEEEcCCcchhhh-----c--ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHH
Q 000114 1418 LGMRVVELTGETAMDLK-----L--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~-----~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isr 1490 (2158)
|+.+..++|+...... . ....+|+|+|||++... .+.......++++|||||||++.+ +|+.+...+.+
T Consensus 89 -gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~--~~~~~l~~~~~~~vViDEaH~i~~-~g~~fr~~~~~ 164 (523)
T 1oyw_A 89 -GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD--NFLEHLAHWNPVLLAVDEAHCISQ-WGHDFRPEYAA 164 (523)
T ss_dssp -TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST--THHHHHTTSCEEEEEESSGGGGCT-TSSCCCHHHHG
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh--HHHHHHhhCCCCEEEEeCccccCc-CCCccHHHHHH
Confidence 6788888887664321 1 13469999999998421 111122347899999999999964 44554444445
Q ss_pred HHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHH
Q 000114 1491 MRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIV 1568 (2158)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~ 1568 (2158)
+..+.... ++.+++++|||+++. .++..|++.....++. .+..+| .+...+... .... ......+.
T Consensus 165 l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~-~l~~~v~~~--~~~~-------~~l~~~l~ 232 (523)
T 1oyw_A 165 LGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRP-NIRYMLMEK--FKPL-------DQLMRYVQ 232 (523)
T ss_dssp GGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCCCCT-TEEEEEEEC--SSHH-------HHHHHHHH
T ss_pred HHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCCCCC-ceEEEEEeC--CCHH-------HHHHHHHH
Confidence 54444443 368999999999874 6788999876544443 223333 233332211 1110 11122222
Q ss_pred HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHH
Q 000114 1569 QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2158)
Q Consensus 1569 ~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR 1648 (2158)
. .+++++||||+|++.|+.++..|.. .+..+..|||+|+.++|
T Consensus 233 ~--~~~~~~IVf~~sr~~~e~l~~~L~~-----------------------------------~g~~~~~~h~~l~~~~R 275 (523)
T 1oyw_A 233 E--QRGKSGIIYCNSRAKVEDTAARLQS-----------------------------------KGISAAAYHAGLENNVR 275 (523)
T ss_dssp H--TTTCCEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHH
T ss_pred h--cCCCcEEEEeCCHHHHHHHHHHHHH-----------------------------------CCCCEEEecCCCCHHHH
Confidence 2 3667999999999999999976632 24568999999999999
Q ss_pred HHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1649 EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1649 ~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
..+++.|++|+++|||||+++++|||+|++++|| |+..|.++.+|+||+|||||.| ..|.|++++...
T Consensus 276 ~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI----------~~~~p~s~~~y~Qr~GRaGR~g--~~~~~~l~~~~~ 343 (523)
T 1oyw_A 276 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV----------HFDIPRNIESYYQETGRAGRDG--LPAEAMLFYDPA 343 (523)
T ss_dssp HHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE----------ESSCCSSHHHHHHHHTTSCTTS--SCEEEEEEECHH
T ss_pred HHHHHHHHcCCCeEEEEechhhCCCCccCccEEE----------EECCCCCHHHHHHHhccccCCC--CCceEEEEeCHH
Confidence 9999999999999999999999999999999999 6778889999999999999987 689999999888
Q ss_pred hHHHHHHHhhC
Q 000114 1729 RKEYYKKFLYD 1739 (2158)
Q Consensus 1729 ~~~~~~k~l~~ 1739 (2158)
+...++.++.+
T Consensus 344 d~~~~~~~~~~ 354 (523)
T 1oyw_A 344 DMAWLRRCLEE 354 (523)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 88888888876
No 49
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.4e-37 Score=394.14 Aligned_cols=339 Identities=20% Similarity=0.319 Sum_probs=143.2
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++.+...+ .||.+|+|+|.++++.++.+. +++++||||+|||++|++|+++.+.... .+.++||++|
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~P 97 (394)
T 1fuu_A 27 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH-DVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAP 97 (394)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTC-CEEECCCSSHHHHHHHHHHHHHHCCTTC--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHhhccC--------CCCCEEEEcC
Confidence 3677777666 589999999999999998874 5999999999999999999998875431 3458999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
+++|+.|+++.+.+++...++++..++|+...... ....++|+|+||+++ +.+.+.. ..+.++++||+||||.+
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEM 174 (394)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTS---SCCTTCCEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCC---cchhhCcEEEEEChHHh
Confidence 99999999999999888889999999998775433 234789999999997 4444332 34678999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEe-cC-CcccccceeEEEeeccCCh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-DN-SYRPVPLSQQYIGIQVKKP 712 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f-~~-~~rpv~l~~~~~~~~~~~~ 712 (2158)
.+ .+...+..++. ..+...+++++|||+++ ++..++......+.... .. ...+..+...+......
T Consensus 175 ~~~~~~~~~~~~~~-------~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 243 (394)
T 1fuu_A 175 LSSGFKEQIYQIFT-------LLPPTTQVVLLSATMPN--DVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE-- 243 (394)
T ss_dssp HHTTCHHHHHHHHH-------HSCTTCEEEEECSSCCH--HHHHHHHHHCCSCEEEEECC--------------------
T ss_pred hCCCcHHHHHHHHH-------hCCCCceEEEEEEecCH--HHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCch--
Confidence 65 45555554433 24567899999999985 33333322212222211 11 11111222222211111
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhh
Q 000114 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2158)
Q Consensus 713 ~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l 792 (2158)
..+...+ ..+......+++||||++++.+..++..|...+
T Consensus 244 ~~~~~~l-----~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------- 283 (394)
T 1fuu_A 244 EYKYECL-----TDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK----------------------------------- 283 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHH-----HHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcC-----------------------------------
Confidence 1111111 112223346799999999999999998886542
Q ss_pred ccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
.++..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ |+++. |..+|+||+||||
T Consensus 284 --~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~----~~~p~------s~~~~~Qr~GR~~ 351 (394)
T 1fuu_A 284 --FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLPA------NKENYIHRIGRGG 351 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE----eCCCC------CHHHHHHHcCccc
Confidence 23567899999999999999999999999999999999999999999999 45443 5668999999999
Q ss_pred CCCCCCccEEEEEcCCCcHHHHHH
Q 000114 873 RPQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
|.| ..|.|+++++..+...+..
T Consensus 352 R~g--~~g~~~~~~~~~~~~~~~~ 373 (394)
T 1fuu_A 352 RFG--RKGVAINFVTNEDVGAMRE 373 (394)
T ss_dssp ------------------------
T ss_pred CCC--CCceEEEEEchhHHHHHHH
Confidence 987 6799999999887665544
No 50
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-37 Score=405.27 Aligned_cols=337 Identities=19% Similarity=0.263 Sum_probs=213.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
+++++...+ .|+..|+++|.++++.++.+ +++++++||||||||++|++++++.+.... .+.++||++|
T Consensus 126 l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~--------~~~~vLvl~P 197 (508)
T 3fho_A 126 XXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV--------PKPQAICLAP 197 (508)
T ss_dssp -------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC--------CSCCEEEECS
T ss_pred cccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC--------CCceEEEEEC
Confidence 444555544 57889999999999999987 578999999999999999999999875532 2458999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
+++|+.|+++.+.+++...++.+....|+..... ....++|+|+||+++ +.+.+.. ..+.++++|||||||.+.+
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ivv~T~~~l~~~l~~~~---~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG-AKIDAQIVIGTPGTVMDLMKRRQ---LDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCCEEC-----------CCCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEECCHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc-ccCCCCEEEECHHHHHHHHHcCC---ccccCCCEEEEechhhhcc
Confidence 9999999999999988777777666666543322 234789999999997 4444433 3467899999999999876
Q ss_pred C--ChhhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEEec-CCcccccceeEEEeeccCChh
Q 000114 638 N--RGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFD-NSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 638 ~--rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn-~~dv~~~l~~~~~~~~~~f~-~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
. .+..+..+ ........|+|++|||+++ .+.+...+...+ ...... ....+..+...+...... .
T Consensus 274 ~~~~~~~~~~i-------~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~--~ 342 (508)
T 3fho_A 274 QQGLGDQSMRI-------KHLLPRNTQIVLFSATFSERVEKYAERFAPNA--NEIRLKTEELSVEGIKQLYMDCQSE--E 342 (508)
T ss_dssp C--CHHHHHHH-------HHHSCTTCEEEEEESCCSTHHHHHHHHHSTTC--EEECCCCCC----CCCCEEEEC--C--H
T ss_pred cCCcHHHHHHH-------HHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCC--eEEEeccccCCcccceEEEEECCch--H
Confidence 3 33333222 2234568999999999986 344444433221 111111 112222233333322211 1
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
.+...+. .+.....++++||||++++.+..++..|...
T Consensus 343 ~k~~~l~-----~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~------------------------------------- 380 (508)
T 3fho_A 343 HKYNVLV-----ELYGLLTIGQSIIFCKKKDTAEEIARRMTAD------------------------------------- 380 (508)
T ss_dssp HHHHHHH-----HHHC---CCCEEEBCSSTTTTTHHHHHHTTT-------------------------------------
T ss_pred HHHHHHH-----HHHHhcCCCcEEEEECCHHHHHHHHHHHHhC-------------------------------------
Confidence 2222111 2222334689999999999999999887542
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
..++..|||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++..+..+.|..+|+||+|||||
T Consensus 381 ~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~----~~~p~~~~~~~s~~~~~Qr~GRagR 456 (508)
T 3fho_A 381 GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN----YDMPLDQAGRPDPQTYLHRIGRTGR 456 (508)
T ss_dssp TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--------CC-----CTHHHHHTTSCCC-
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE----ECCCCcccCCCCHHHHHHHhhhcCC
Confidence 235788999999999999999999999999999999999999999999998 5555444445688999999999999
Q ss_pred CCCCCccEEEEEcCCC
Q 000114 874 PQYDSYGEGIIITGHS 889 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~ 889 (2158)
.| ..|.|++++...
T Consensus 457 ~g--~~g~~i~l~~~~ 470 (508)
T 3fho_A 457 FG--RVGVSINFVHDK 470 (508)
T ss_dssp ------CEEEEEECTT
T ss_pred CC--CCcEEEEEEeCh
Confidence 87 669999998753
No 51
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=5e-35 Score=397.12 Aligned_cols=467 Identities=16% Similarity=0.174 Sum_probs=310.6
Q ss_pred ccChhHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1326 ALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1326 ~L~~~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
.+.....+.+......|+++|.+++..++.++++++++||||||||++ +|++-.......+.+.+++|++|+++|+.|
T Consensus 78 ~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilvl~P~r~La~q 155 (773)
T 2xau_A 78 EFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVACTQPRRVAAMS 155 (773)
T ss_dssp BCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEecCchHHHHHH
Confidence 344444444433236889999999999998888999999999999993 444421111111112389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHH
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e 1485 (2158)
+++++...++...+..++.-. ..+.......+|+++||+++...+.. ...+.++++||+||+|. ++...+
T Consensus 156 ~~~~l~~~~~~~v~~~vG~~i---~~~~~~~~~~~I~v~T~G~l~r~l~~---~~~l~~~~~lIlDEah~----R~ld~d 225 (773)
T 2xau_A 156 VAQRVAEEMDVKLGEEVGYSI---RFENKTSNKTILKYMTDGMLLREAME---DHDLSRYSCIILDEAHE----RTLATD 225 (773)
T ss_dssp HHHHHHHHTTCCBTTTEEEEE---TTEEECCTTCSEEEEEHHHHHHHHHH---STTCTTEEEEEECSGGG----CCHHHH
T ss_pred HHHHHHHHhCCchhheeccee---ccccccCCCCCEEEECHHHHHHHHhh---CccccCCCEEEecCccc----cccchH
Confidence 999888666543333333211 11112224669999999998765443 45689999999999995 112223
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHH
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~ 1565 (2158)
.++..++.+... ..+.++|++|||+ +.+++++|++... ++... .+..|+++.+.......+... ...
T Consensus 226 ~~~~~l~~l~~~-~~~~~iIl~SAT~-~~~~l~~~~~~~~--vi~v~--gr~~pv~~~~~~~~~~~~~~~-------~l~ 292 (773)
T 2xau_A 226 ILMGLLKQVVKR-RPDLKIIIMSATL-DAEKFQRYFNDAP--LLAVP--GRTYPVELYYTPEFQRDYLDS-------AIR 292 (773)
T ss_dssp HHHHHHHHHHHH-CTTCEEEEEESCS-CCHHHHHHTTSCC--EEECC--CCCCCEEEECCSSCCSCHHHH-------HHH
T ss_pred HHHHHHHHHHHh-CCCceEEEEeccc-cHHHHHHHhcCCC--ccccc--CcccceEEEEecCCchhHHHH-------HHH
Confidence 344445555433 3478999999999 6788999997532 34333 345566665544333332211 111
Q ss_pred HHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCC
Q 000114 1566 AIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2158)
Q Consensus 1566 ~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l 1643 (2158)
.+.... ...+++||||++++.|+.++..|...+. .+. ......+..|..+||+|
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~----------------------~l~--~~~~~~~~~v~~lhg~l 348 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGD----------------------QLV--REEGCGPLSVYPLYGSL 348 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHH----------------------HHH--HHHCCCCEEEEEECTTC
T ss_pred HHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHH----------------------hhc--ccccCCCeEEEEeCCCC
Confidence 222111 3578999999999999999987743210 000 00011244589999999
Q ss_pred CHHHHHHHHHHHH-----cCCceEEEecCccccccCCCccEEEEe----cceeecCCCCcCc----CCCHHHHHHhhccC
Q 000114 1644 NKTDQEVVSALFE-----AGKIKVCVMSSSMCWGVPLTAHLVVVM----GTQYYDGQENAHT----DYPVTDLLQMMGHA 1710 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~-----~g~i~VLVaT~~la~Gvdlp~~~vVI~----gt~~yd~~~~~~~----~~s~~~~lQr~GRa 1710 (2158)
+.++|..+++.|. +|.++|||||+++++|||+|++.+||. ....||++.+... |.|..+|+||+|||
T Consensus 349 ~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRa 428 (773)
T 2xau_A 349 PPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRA 428 (773)
T ss_dssp CHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGG
T ss_pred CHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhcccc
Confidence 9999999999999 999999999999999999999999994 4566888765543 88999999999999
Q ss_pred CCCCCCCceEEEEEecCChHHHHHHHhh--CCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCC
Q 000114 1711 SRPLLDNSGKCVILCHAPRKEYYKKFLY--DAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPN 1788 (2158)
Q Consensus 1711 GR~g~d~~G~~iil~~~~~~~~~~k~l~--~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~ 1788 (2158)
||. ..|.|+.++... ++...+.. .|+...+.|...+... ...| +.+... |. +...|
T Consensus 429 GR~---~~G~~~~l~~~~--~~~~~l~~~~~pEi~r~~L~~~~L~l----~~~g-i~~~~~--------f~---~~~~p- 486 (773)
T 2xau_A 429 GRT---RPGKCFRLYTEE--AFQKELIEQSYPEILRSNLSSTVLEL----KKLG-IDDLVH--------FD---FMDPP- 486 (773)
T ss_dssp GSS---SSEEEEESSCHH--HHHHTSCSSCCCGGGGSCCHHHHHHH----HHTT-CCCGGG--------CC---CSSCC-
T ss_pred CCC---CCCEEEEEecHH--HhcccccccCCCccccCcHHHHHHHH----HHcC-CCChhh--------cc---ccCCC-
Confidence 996 689999998653 22233332 3444555553332211 1111 221110 10 11222
Q ss_pred CccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHH
Q 000114 1789 YYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVL 1868 (2158)
Q Consensus 1789 ~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~il 1868 (2158)
..+.++.++..|...|+|. ++ ..+|.+|+++|.+|+++.+++++..+....+ ...++.|+
T Consensus 487 ---------------~~~~i~~a~~~L~~lgald--~~--~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c-~~~~l~i~ 546 (773)
T 2xau_A 487 ---------------APETMMRALEELNYLACLD--DE--GNLTPLGRLASQFPLDPMLAVMLIGSFEFQC-SQEILTIV 546 (773)
T ss_dssp ---------------CHHHHHHHHHHHHHTTSBC--TT--SCBCHHHHHHTTSSSCHHHHHHHHHGGGGTC-HHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHcCCcc--cC--CCcChhhhhhccccCCHHHHHHHHhhcccCc-hhHHHHHH
Confidence 1368899999999999993 32 3578899999999999999999998765444 56777777
Q ss_pred hcCccccCCCCCcchH
Q 000114 1869 ASASEYAQLPIRPGEE 1884 (2158)
Q Consensus 1869 s~a~Ef~~i~vR~~E~ 1884 (2158)
|..+ +.++.+++.+.
T Consensus 547 a~ls-~~~~f~~~~~~ 561 (773)
T 2xau_A 547 AMLS-VPNVFIRPTKD 561 (773)
T ss_dssp HHHT-SCCCBCCCTTC
T ss_pred Hhcc-cCCcccCChHH
Confidence 6554 45666666554
No 52
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2e-35 Score=387.32 Aligned_cols=330 Identities=21% Similarity=0.297 Sum_probs=245.3
Q ss_pred ChhhHhhc---CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 483 PEWAQPAF---KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 483 p~~~~~~f---~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
++.+...+ .||.+|+|+|.++++.++.++ +++++||||+|||++|++|++.. ..++|||+|+
T Consensus 10 ~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~-d~lv~apTGsGKTl~~~lp~l~~--------------~g~~lvi~P~ 74 (523)
T 1oyw_A 10 ESGAKQVLQETFGYQQFRPGQEEIIDTVLSGR-DCLVVMPTGGGKSLCYQIPALLL--------------NGLTVVVSPL 74 (523)
T ss_dssp HHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHS--------------SSEEEEECSC
T ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCC-CEEEECCCCcHHHHHHHHHHHHh--------------CCCEEEECCh
Confidence 34444444 489999999999999999875 59999999999999999998742 1279999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEa 632 (2158)
++|+.|+++.+.+. |+.+..++|+....... ....+|+|+|||++.. ..........++++||||||
T Consensus 75 ~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~--~~~~~~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 75 ISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLML--DNFLEHLAHWNPVLLAVDEA 148 (523)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTS--TTHHHHHTTSCEEEEEESSG
T ss_pred HHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC--hHHHHHHhhCCCCEEEEeCc
Confidence 99999999998874 78888898877644321 2458999999998621 00000112357899999999
Q ss_pred ccccc---CChhhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEEecCCcccccceeEEEee
Q 000114 633 HLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707 (2158)
Q Consensus 633 H~l~d---~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~--~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~ 707 (2158)
|++.+ .+.+.+..+ .++. ...+.+++++||||+++. .++..+++.. .+........+| .+...+.
T Consensus 149 H~i~~~g~~fr~~~~~l-~~l~----~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~--~~~~~~~~~~r~-~l~~~v~-- 218 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAAL-GQLR----QRFPTLPFMALTATADDTTRQDIVRLLGLN--DPLIQISSFDRP-NIRYMLM-- 218 (523)
T ss_dssp GGGCTTSSCCCHHHHGG-GGHH----HHCTTSCEEEEESCCCHHHHHHHHHHHTCC--SCEEEECCCCCT-TEEEEEE--
T ss_pred cccCcCCCccHHHHHHH-HHHH----HhCCCCCEEEEeCCCCHHHHHHHHHHhCCC--CCeEEeCCCCCC-ceEEEEE--
Confidence 99965 244555433 2222 123568999999998763 5677777653 233333333343 2322222
Q ss_pred ccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcc
Q 000114 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2158)
Q Consensus 708 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 787 (2158)
.... .... +.+.+. ...++++||||+|++.++.++..|...+
T Consensus 219 ~~~~---~~~~----l~~~l~-~~~~~~~IVf~~sr~~~e~l~~~L~~~g------------------------------ 260 (523)
T 1oyw_A 219 EKFK---PLDQ----LMRYVQ-EQRGKSGIIYCNSRAKVEDTAARLQSKG------------------------------ 260 (523)
T ss_dssp ECSS---HHHH----HHHHHH-HTTTCCEEEECSSHHHHHHHHHHHHHTT------------------------------
T ss_pred eCCC---HHHH----HHHHHH-hcCCCcEEEEeCCHHHHHHHHHHHHHCC------------------------------
Confidence 2221 1121 222222 2356799999999999999999997643
Q ss_pred hhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHh
Q 000114 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (2158)
Q Consensus 788 ~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr 867 (2158)
..+..|||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. |+.+|+||
T Consensus 261 -------~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~----~~~p~------s~~~y~Qr 323 (523)
T 1oyw_A 261 -------ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIESYYQE 323 (523)
T ss_dssp -------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSCCS------SHHHHHHH
T ss_pred -------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE----ECCCC------CHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999 77665 88999999
Q ss_pred hcccCCCCCCCccEEEEEcCCCcHHHHHHhhcC
Q 000114 868 LGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (2158)
Q Consensus 868 ~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (2158)
+|||||.| ..|.|+++++..+...+..++..
T Consensus 324 ~GRaGR~g--~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 324 TGRAGRDG--LPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp HTTSCTTS--SCEEEEEEECHHHHHHHHHHHHT
T ss_pred hccccCCC--CCceEEEEeCHHHHHHHHHHHhc
Confidence 99999987 56999999999888877777665
No 53
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.4e-36 Score=384.85 Aligned_cols=342 Identities=17% Similarity=0.249 Sum_probs=143.4
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|+....+.+.. ||..|+|+|.++++.+++++ +++++||||||||++|.+|++..+.....++ +++|++|+++|+.
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~--~~lil~P~~~L~~ 103 (394)
T 1fuu_A 27 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH-DVLAQAQSGTGKTGTFSIAALQRIDTSVKAP--QALMLAPTRELAL 103 (394)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTC-CEEECCCSSHHHHHHHHHHHHHHCCTTCCSC--CEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHhhccCCCC--CEEEEcCCHHHHH
Confidence 355666777766 79999999999999999864 5999999999999999999998876632333 8999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
|+++.+.+ +....++++..++|+.... ...+..++|+|+||+++...+.+ ....+.+++++|+||||++.+..
T Consensus 104 q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~vIiDEah~~~~~~-- 178 (394)
T 1fuu_A 104 QIQKVVMA-LAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSG-- 178 (394)
T ss_dssp HHHHHHHH-HTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTT--
T ss_pred HHHHHHHH-HhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEEChHHhhCCC--
Confidence 99999984 4444588899999987653 33445789999999998877665 23457889999999999986543
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
+...+..+...++...+++++|||+++. .....|+.... .+........+..+........... ..
T Consensus 179 ----~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 246 (394)
T 1fuu_A 179 ----FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-RILVKKDELTLEGIKQFYVNVEEEE-------YK 246 (394)
T ss_dssp ----CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-EEEECC----------------------------
T ss_pred ----cHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCe-EEEecCccccCCCceEEEEEcCchh-------hH
Confidence 1223333444456789999999999863 22334443221 1111111111111111110000000 00
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
......+... ...+++||||++++.++.++..|.. .+.++..+|
T Consensus 247 ~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~ 290 (394)
T 1fuu_A 247 YECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRN-----------------------------------DKFTVSAIY 290 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhc-CCCCcEEEEECCHHHHHHHHHHHHH-----------------------------------cCCeEEEee
Confidence 0111122222 3467899999999999888865521 234588999
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
|+|+..+|..+++.|++|..+|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|.
T Consensus 291 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi----------~~~~p~s~~~~~Qr~GR~~R~g--~~g~ 358 (394)
T 1fuu_A 291 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI----------NYDLPANKENYIHRIGRGGRFG--RKGV 358 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE----------EeCCCCCHHHHHHHcCcccCCC--CCce
Confidence 999999999999999999999999999999999999999998 5566778999999999999987 6899
Q ss_pred EEEEecCChHHHHHH
Q 000114 1721 CVILCHAPRKEYYKK 1735 (2158)
Q Consensus 1721 ~iil~~~~~~~~~~k 1735 (2158)
|++++.+.+...+++
T Consensus 359 ~~~~~~~~~~~~~~~ 373 (394)
T 1fuu_A 359 AINFVTNEDVGAMRE 373 (394)
T ss_dssp ---------------
T ss_pred EEEEEchhHHHHHHH
Confidence 999998876554443
No 54
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.9e-34 Score=359.04 Aligned_cols=321 Identities=19% Similarity=0.279 Sum_probs=239.3
Q ss_pred HHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1331 LYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1331 ~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
..+.+.. ||..|+|+|.++++.++++ ++++++||||||||++|+++++.. +. +++|++|+++|+.|+++.
T Consensus 5 i~~~l~~~g~~~l~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~~~~~~~------~~--~~liv~P~~~L~~q~~~~ 75 (337)
T 2z0m_A 5 IEQAIREMGFKNFTEVQSKTIPLMLQG-KNVVVRAKTGSGKTAAYAIPILEL------GM--KSLVVTPTRELTRQVASH 75 (337)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHH------TC--CEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEcCCCCcHHHHHHHHHHhh------cC--CEEEEeCCHHHHHHHHHH
Confidence 3344443 7999999999999999875 569999999999999999998752 33 899999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHH
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~ 1487 (2158)
++ .+....+.++..++|+.... ...+..++|+|+||+++..++.. ....+.+++++|+||||++.++. +
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~------~ 146 (337)
T 2z0m_A 76 IR-DIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSK--GVIDLSSFEIVIIDEADLMFEMG------F 146 (337)
T ss_dssp HH-HHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHT--TSCCGGGCSEEEEESHHHHHHTT------C
T ss_pred HH-HHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHc--CCcchhhCcEEEEEChHHhhccc------c
Confidence 99 55555678899999987654 33455689999999999877654 23357889999999999987553 2
Q ss_pred HHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHH
Q 000114 1488 VSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~ 1565 (2158)
...+..+....+...+++++|||+++. ..+..|+.... .+ ........+...+....... +....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~ 213 (337)
T 2z0m_A 147 IDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYE--EI--EACIGLANVEHKFVHVKDDW---------RSKVQ 213 (337)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCE--EE--ECSGGGGGEEEEEEECSSSS---------HHHHH
T ss_pred HHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCce--ee--ecccccCCceEEEEEeChHH---------HHHHH
Confidence 334444555566788999999999763 34455554321 11 11122222232222222111 11112
Q ss_pred HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCH
Q 000114 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2158)
Q Consensus 1566 ~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~ 1645 (2158)
.+ .. ..++++||||++++.++.++..| ..+..+||+++.
T Consensus 214 ~~-~~-~~~~~~lvf~~~~~~~~~l~~~l---------------------------------------~~~~~~~~~~~~ 252 (337)
T 2z0m_A 214 AL-RE-NKDKGVIVFVRTRNRVAKLVRLF---------------------------------------DNAIELRGDLPQ 252 (337)
T ss_dssp HH-HT-CCCSSEEEECSCHHHHHHHHTTC---------------------------------------TTEEEECTTSCH
T ss_pred HH-Hh-CCCCcEEEEEcCHHHHHHHHHHh---------------------------------------hhhhhhcCCCCH
Confidence 22 22 46788999999999998777322 147889999999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
.+|..+++.|++|+++|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|.|++++
T Consensus 253 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi----------~~~~~~s~~~~~Q~~GR~gR~g--~~g~~~~~~ 320 (337)
T 2z0m_A 253 SVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVI----------NFDAPQDLRTYIHRIGRTGRMG--RKGEAITFI 320 (337)
T ss_dssp HHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEE----------ESSCCSSHHHHHHHHTTBCGGG--CCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEE----------EecCCCCHHHhhHhcCccccCC--CCceEEEEE
Confidence 9999999999999999999999999999999999888 4566778999999999999987 678999888
Q ss_pred cCChHHHHHHH
Q 000114 1726 HAPRKEYYKKF 1736 (2158)
Q Consensus 1726 ~~~~~~~~~k~ 1736 (2158)
. .+..+.+++
T Consensus 321 ~-~~~~~~~~i 330 (337)
T 2z0m_A 321 L-NEYWLEKEV 330 (337)
T ss_dssp S-SCHHHHHHH
T ss_pred e-CcHHHHHHH
Confidence 8 555555544
No 55
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.5e-34 Score=371.04 Aligned_cols=330 Identities=17% Similarity=0.195 Sum_probs=228.9
Q ss_pred CChhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 482 MPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 482 lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
+.++++..| |+ +|+|+|.++++.++.++ |++++||||||||++|+++++..+.. +.++||++|+++
T Consensus 10 ~~~~l~~~~-~~-~~~~~Q~~~i~~i~~~~-~~lv~apTGsGKT~~~l~~~~~~~~~-----------~~~~lil~Pt~~ 75 (414)
T 3oiy_A 10 FRSFFKKKF-GK-DLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMTALWLARK-----------GKKSALVFPTVT 75 (414)
T ss_dssp HHHHHHHHH-SS-CCCHHHHHHHHHHTTTC-CEECCSCSSSSHHHHHHHHHHHHHTT-----------TCCEEEEESSHH
T ss_pred HHHHHHHhc-CC-CCCHHHHHHHHHHhcCC-CEEEEeCCCCCHHHHHHHHHHHHhcC-----------CCEEEEEECCHH
Confidence 345555555 45 79999999999998775 69999999999999999998887622 348999999999
Q ss_pred HHHHHHHHHHhhcccCCcEEEEEeCCCccCHh-----h--hccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-----Q--IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 562 La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~-----~--~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|+.|+++.+.+++. .|+++..++|+...... . ...++|+|+||+++....+. ..+.++++|||||||+
T Consensus 76 L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~ 150 (414)
T 3oiy_A 76 LVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDA 150 (414)
T ss_dssp HHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHH
T ss_pred HHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHh
Confidence 99999999999777 88999999999876321 1 12489999999998333332 3355799999999998
Q ss_pred ccc------------CChhh-HHHHHHHHHH--HHhhc--cccccEEEEccc-cCCh---HHHHHHHhccccCceEEecC
Q 000114 635 LHD------------NRGPV-LESIVARTVR--QIETT--KEHIRLVGLSAT-LPNY---EDVALFLRVNLEKGLFYFDN 693 (2158)
Q Consensus 635 l~d------------~rg~~-le~iv~r~~~--~~~~~--~~~~riv~lSAT-lpn~---~dv~~~l~~~~~~~~~~f~~ 693 (2158)
+.+ ++.+. +..++..+.. ..... ....+++++||| .|.. .-...++..... ..
T Consensus 151 ~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~------~~ 224 (414)
T 3oiy_A 151 VLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG------RL 224 (414)
T ss_dssp HHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS------CC
T ss_pred hhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC------cc
Confidence 753 22222 4444433310 00011 167899999999 4432 112233332211 11
Q ss_pred CcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchh
Q 000114 694 SYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773 (2158)
Q Consensus 694 ~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 773 (2158)
...+..+.+.+... .+ ...+ .+.+.. .++++||||++++.|..++..|...+.
T Consensus 225 ~~~~~~i~~~~~~~--~~----~~~l----~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~--------------- 277 (414)
T 3oiy_A 225 VSVARNITHVRISS--RS----KEKL----VELLEI--FRDGILIFAQTEEEGKELYEYLKRFKF--------------- 277 (414)
T ss_dssp CCCCCSEEEEEESS--CC----HHHH----HHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTC---------------
T ss_pred ccccccchheeecc--CH----HHHH----HHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCC---------------
Confidence 11122233333322 11 1111 222222 258999999999999999999987542
Q ss_pred HHHHHhhhhccCcchhhhhccCCeE-EecCCCCHHHHHHHHHHHhCCCceEEEe----chhhhhccCCCc-eEEEEeccc
Q 000114 774 REILQSHTDMVKSNDLKDLLPYGFA-IHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVIIKGTQ 847 (2158)
Q Consensus 774 ~~~l~~~~~~~~~~~l~~ll~~gv~-~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vVI~~~~ 847 (2158)
.+. .+||. +|. ++.|++|.++|||| |+++++|+|+|+ +++||+
T Consensus 278 ----------------------~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~--- 326 (414)
T 3oiy_A 278 ----------------------NVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF--- 326 (414)
T ss_dssp ----------------------CEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE---
T ss_pred ----------------------ceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE---
Confidence 244 56874 444 99999999999999 999999999999 999999
Q ss_pred ccCCCCCccccCCHHHHHHhhcccCCCCCC--CccEEEEEcCCCc-HHHHHHhhc
Q 000114 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYD--SYGEGIIITGHSE-LRYYLSLMN 899 (2158)
Q Consensus 848 ~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d--~~G~~iil~~~~~-~~~y~~ll~ 899 (2158)
|+++.+ .+..+|+||+|||||.|.+ +.|.+++++.+.. ...+.+.+.
T Consensus 327 -~~~p~~----~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 327 -WGTPSG----PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 376 (414)
T ss_dssp -ESCCTT----TCHHHHHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred -ECCCCC----CCHHHHHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHhc
Confidence 666621 2889999999999999876 5899999994322 233444455
No 56
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4e-33 Score=357.76 Aligned_cols=317 Identities=16% Similarity=0.144 Sum_probs=222.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
| .|+|+|.++++.+++++ |++++||||||||++|+++++..... ++ +++|++|+++|+.|+++.+++ ++. .
T Consensus 20 ~-~~~~~Q~~~i~~i~~~~-~~lv~apTGsGKT~~~l~~~~~~~~~---~~--~~lil~Pt~~L~~q~~~~~~~-~~~-~ 90 (414)
T 3oiy_A 20 K-DLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMTALWLARK---GK--KSALVFPTVTLVKQTLERLQK-LAD-E 90 (414)
T ss_dssp S-CCCHHHHHHHHHHTTTC-CEECCSCSSSSHHHHHHHHHHHHHTT---TC--CEEEEESSHHHHHHHHHHHHH-HCC-S
T ss_pred C-CCCHHHHHHHHHHhcCC-CEEEEeCCCCCHHHHHHHHHHHHhcC---CC--EEEEEECCHHHHHHHHHHHHH-Hcc-C
Confidence 5 79999999999999854 69999999999999999998876632 34 899999999999999999995 665 6
Q ss_pred CcEEEEEcCCcchh-----hhcc-c-CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHH--
Q 000114 1419 GMRVVELTGETAMD-----LKLL-E-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS-- 1489 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~-----~~~l-~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~is-- 1489 (2158)
|+++..++|+.+.. ...+ . .++|+|+||+++..++.. ..+.++++||+||||++.+++ ..++..+.
T Consensus 91 ~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~~~~~~-~~~d~~l~~~ 165 (414)
T 3oiy_A 91 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKAS-RNIDTLLMMV 165 (414)
T ss_dssp SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHHHHHCH-HHHHHHHHHT
T ss_pred CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHhhhhcc-chhhhHHhhc
Confidence 89999999998762 1222 2 379999999999776654 345689999999999886431 00111111
Q ss_pred ----H-HHHHHhhcC-----------CCceEEEeccCC-CCh---HHHHHHhccCCCceEecCCCCcccccEEEEecccc
Q 000114 1490 ----R-MRYIASQVE-----------NKIRIVALSTSL-ANA---KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI 1549 (2158)
Q Consensus 1490 ----r-l~~i~~~~~-----------~~~riV~lSATl-~n~---~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~ 1549 (2158)
. +..+...++ .+.+++++|||+ +.. .-...+++..... ....+..+...+...
T Consensus 166 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~-- 238 (414)
T 3oiy_A 166 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRISS-- 238 (414)
T ss_dssp TCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC-----CCCCCCSEEEEEESS--
T ss_pred CCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc-----cccccccchheeecc--
Confidence 1 222222222 678999999994 432 2233444422211 111111222222211
Q ss_pred cchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHH
Q 000114 1550 TNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (2158)
Q Consensus 1550 ~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (2158)
.. ......+... .++++||||++++.|+.++..|..
T Consensus 239 -~~--------~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~--------------------------------- 274 (414)
T 3oiy_A 239 -RS--------KEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKR--------------------------------- 274 (414)
T ss_dssp -CC--------HHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHH---------------------------------
T ss_pred -CH--------HHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence 11 1111222222 358999999999999999876632
Q ss_pred HHhcccEE-EecCCCCHHHHHHHHHHHHcCCceEEEe----cCccccccCCCc-cEEEEecceeecCCCCcCcC--CCHH
Q 000114 1630 ATLRHGVG-YLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTA-HLVVVMGTQYYDGQENAHTD--YPVT 1701 (2158)
Q Consensus 1630 ~~l~~gv~-~~H~~l~~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdlp~-~~vVI~gt~~yd~~~~~~~~--~s~~ 1701 (2158)
.+..+. .+||. +|+ ++.|++|+++|||| |+++++|+|+|+ +.+|| +++.| .+..
T Consensus 275 --~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI----------~~~~p~~~~~~ 336 (414)
T 3oiy_A 275 --FKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI----------FWGTPSGPDVY 336 (414)
T ss_dssp --TTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEE----------EESCCTTTCHH
T ss_pred --cCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEE----------EECCCCCCCHH
Confidence 234576 88884 444 99999999999999 999999999999 88888 56677 7999
Q ss_pred HHHHhhccCCCCCCC--CceEEEEEecCCh-HHHHHHHhh
Q 000114 1702 DLLQMMGHASRPLLD--NSGKCVILCHAPR-KEYYKKFLY 1738 (2158)
Q Consensus 1702 ~~lQr~GRaGR~g~d--~~G~~iil~~~~~-~~~~~k~l~ 1738 (2158)
+|+||+|||||.|.+ ..|.|++++.+.. ...+++++.
T Consensus 337 ~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 337 TYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 376 (414)
T ss_dssp HHHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHhc
Confidence 999999999998865 5899999994332 234555555
No 57
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.1e-33 Score=373.07 Aligned_cols=350 Identities=19% Similarity=0.284 Sum_probs=192.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
..+|+|+|.++++.++.+ .+++++||||||||++|++|+++.+...... .+.++|||+|+++|+.|+++.|.+
T Consensus 5 ~~~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 5 TKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAG------RKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ---CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSS------CCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHHhCccc------CCCeEEEEeCCHHHHHHHHHHHHH
Confidence 357999999999999876 4599999999999999999999998765321 245899999999999999999999
Q ss_pred hcccCCcEEEEEeCCCccCHh---hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHH
Q 000114 573 RLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r 649 (2158)
++...++++..++|+...... ....++|+|+||+++....+... ...+.++++|||||||++.+.. + +..++.+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~~-~-~~~~~~~ 154 (556)
T 4a2p_A 78 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-LTSLSIFTLMIFDECHNTTGNH-P-YNVLMTR 154 (556)
T ss_dssp HHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS-CCCSTTCSEEEEETGGGCSTTS-H-HHHHHHH
T ss_pred HhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc-ccccccCCEEEEECCcccCCcc-h-HHHHHHH
Confidence 988889999999998865432 24578999999999844443321 1257889999999999997543 3 5555544
Q ss_pred HHHHH-hhccccccEEEEccccC--ChHHHHHHHhc------cccCceEEecCC-------cccccceeEEEeecc--CC
Q 000114 650 TVRQI-ETTKEHIRLVGLSATLP--NYEDVALFLRV------NLEKGLFYFDNS-------YRPVPLSQQYIGIQV--KK 711 (2158)
Q Consensus 650 ~~~~~-~~~~~~~riv~lSATlp--n~~dv~~~l~~------~~~~~~~~f~~~-------~rpv~l~~~~~~~~~--~~ 711 (2158)
..... ....+..++++||||++ +..++..|+.. ......+..... +.+.+... +..+.. ..
T Consensus 155 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 233 (556)
T 4a2p_A 155 YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEID-VRLVKRRIHN 233 (556)
T ss_dssp HHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEE-EEECCCCSCC
T ss_pred HHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceE-EEEcCCCcCC
Confidence 43321 22245689999999984 34444444321 101011111110 00111110 110000 00
Q ss_pred hhH--------------------------------------HH-------------------------------------
Q 000114 712 PLQ--------------------------------------RF------------------------------------- 716 (2158)
Q Consensus 712 ~~~--------------------------------------~~------------------------------------- 716 (2158)
... ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (556)
T 4a2p_A 234 PFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYND 313 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 000 00
Q ss_pred --------------HH-------------------------------------------hhHHHHHHHHHH---hCCCeE
Q 000114 717 --------------QL-------------------------------------------MNDLCYEKVVAV---AGKHQV 736 (2158)
Q Consensus 717 --------------~~-------------------------------------------l~~~~~~~i~~~---~~~~~v 736 (2158)
.. -...+.+.+.+. ..++++
T Consensus 314 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~ 393 (556)
T 4a2p_A 314 ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRT 393 (556)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceE
Confidence 00 000011111121 346899
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHH
Q 000114 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2158)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2158)
||||+++..+..++..|........ + ....+...+...+||+|+..+|..+++.|
T Consensus 394 lVF~~~~~~~~~l~~~L~~~~~~~~-----~--------------------~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 394 LLFAKTRALVSALKKCMEENPILNY-----I--------------------KPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp EEEESSHHHHHHHHHHHTTCSGGGS-----C--------------------CEEC-------------------------
T ss_pred EEEEccHHHHHHHHHHHHhCCCcce-----e--------------------eeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 9999999999999998875310000 0 00112344566779999999999999999
Q ss_pred hC-CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 817 GD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 817 ~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
++ |.++|||||+++++|||+|++++||+ ||++. ++.+|+||+|| ||. ..|.++++++..+..
T Consensus 449 ~~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~p~------s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 449 KTSKDNRLLIATSVADEGIDIVQCNLVVL----YEYSG------NVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 511 (556)
T ss_dssp -----CCEEEEEC-----------CEEEE----ETCCS------CHHHHHHC------------CCEEEEESCHHHH
T ss_pred cccCceEEEEEcCchhcCCCchhCCEEEE----eCCCC------CHHHHHHhcCC-CCC---CCceEEEEEeCcchH
Confidence 99 99999999999999999999999999 77665 78899999999 996 569999999886643
No 58
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.4e-32 Score=366.61 Aligned_cols=345 Identities=19% Similarity=0.212 Sum_probs=215.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
+|+|+|.++++.++.+ .+++++||||||||++|++|+++.+...... .+.++|||+|+++|+.|+++.|.+++
T Consensus 4 ~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCG------QKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSS------CCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccC------CCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 6899999999999876 4699999999999999999999998765321 24589999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHh---hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~ 651 (2158)
...++++..++|+.....+ ....++|+|+||+++........ ...+.++++|||||||++.+.. + +..++.+.+
T Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~~-~-~~~~~~~~~ 153 (555)
T 3tbk_A 77 ERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA-IPSLSVFTLMIFDECHNTSKNH-P-YNQIMFRYL 153 (555)
T ss_dssp HTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS-SCCGGGCSEEEETTGGGCSTTC-H-HHHHHHHHH
T ss_pred ccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc-ccccccCCEEEEECccccCCcc-h-HHHHHHHHH
Confidence 8889999999999865432 34578999999999844443321 1257889999999999997643 2 566655544
Q ss_pred HHHhh--ccccccEEEEccccCCh--HH----------HHHHHhccccCceEEecC-------CcccccceeEEEeecc-
Q 000114 652 RQIET--TKEHIRLVGLSATLPNY--ED----------VALFLRVNLEKGLFYFDN-------SYRPVPLSQQYIGIQV- 709 (2158)
Q Consensus 652 ~~~~~--~~~~~riv~lSATlpn~--~d----------v~~~l~~~~~~~~~~f~~-------~~rpv~l~~~~~~~~~- 709 (2158)
..... ....+++++||||+++. .+ +..++.. ..+.... .+.+.+... +..+..
T Consensus 154 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 228 (555)
T 3tbk_A 154 DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA----SVIATVRDNVAELEQVVYKPQKI-SRKVASR 228 (555)
T ss_dssp HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC----SEEECCCSCHHHHHTTCCCCCEE-EEECCCC
T ss_pred HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC----eeeeccccCHHHHHhhcCCCceE-EEEecCc
Confidence 32211 13568999999998542 11 2222221 1111111 011111111 110110
Q ss_pred -CChhH---------------------------------------HHHH-------------------------------
Q 000114 710 -KKPLQ---------------------------------------RFQL------------------------------- 718 (2158)
Q Consensus 710 -~~~~~---------------------------------------~~~~------------------------------- 718 (2158)
..... ....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 00000 0000
Q ss_pred ---------------------------------------------------------------hhHHHHHHHHH---HhC
Q 000114 719 ---------------------------------------------------------------MNDLCYEKVVA---VAG 732 (2158)
Q Consensus 719 ---------------------------------------------------------------l~~~~~~~i~~---~~~ 732 (2158)
-...+.+.+.+ ...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 00001111111 123
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
.+++||||+++..+..++..|...+...... ...+...+...+||+|+..+|..+
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~-------------------------~~~~~g~~~~~~~~~~~~~~R~~~ 443 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLK-------------------------PGILTGRGRTNRATGMTLPAQKCV 443 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCC-------------------------EEECCC------------------
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCcee-------------------------eeEEEecCCcccccccCHHHHHHH
Confidence 5899999999999999999998764321100 011233456677999999999999
Q ss_pred HHHHhC-CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 813 EDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 813 ~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
++.|++ |.++|||||+++++|||+|++++||+++.|+++. +|+||+|| ||. ..|.++++++..+.
T Consensus 444 ~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~----------~~~Qr~GR-gR~---~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 444 LEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVI----------KMIQTRGR-GRA---RDSKCFLLTSSADV 509 (555)
T ss_dssp --------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCC----------CEECSSCC-CTT---TSCEEEEEESCHHH
T ss_pred HHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHH----------HHHHhcCc-CcC---CCceEEEEEcCCCH
Confidence 999999 9999999999999999999999999966666555 59999999 885 57999999988765
Q ss_pred HH
Q 000114 892 RY 893 (2158)
Q Consensus 892 ~~ 893 (2158)
..
T Consensus 510 ~~ 511 (555)
T 3tbk_A 510 IE 511 (555)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 59
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.2e-32 Score=363.20 Aligned_cols=349 Identities=20% Similarity=0.249 Sum_probs=189.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
...|+|+|.++++.++.+ .|+++++|||||||++|++|+++.+.......+.++|||+|+++|+.|+++.|++.+.. .
T Consensus 5 ~~~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~ 82 (556)
T 4a2p_A 5 TKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-Q 82 (556)
T ss_dssp ---CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-G
T ss_pred CCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-c
Confidence 347999999999999875 56999999999999999999999887743222348999999999999999999965543 4
Q ss_pred CcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccc-cccceeEEEecccccccCCCCChHHHHHHHHHHH
Q 000114 1419 GMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i 1494 (2158)
++++..++|+..... .....++|+|+||+++..++.. ... .+.++++||+||||++.+.. + +..++.++...
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~-~-~~~~~~~~~~~ 158 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH-P-YNVLMTRYLEQ 158 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS--SSCCCSTTCSEEEEETGGGCSTTS-H-HHHHHHHHHHH
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh--CcccccccCCEEEEECCcccCCcc-h-HHHHHHHHHHh
Confidence 789999999875442 2345679999999999887755 222 57889999999999997543 2 55554333221
Q ss_pred -HhhcCCCceEEEeccCCC--ChHHHHHHhccC-------CCceEecCCC---------CcccccEEEEecccccchHH-
Q 000114 1495 -ASQVENKIRIVALSTSLA--NAKDLGEWIGAT-------SHGLFNFPPG---------VRPVPLEIHIQGVDITNFEA- 1554 (2158)
Q Consensus 1495 -~~~~~~~~riV~lSATl~--n~~dl~~wl~~~-------~~~i~~f~~~---------~rpv~l~~~i~~~~~~~~~~- 1554 (2158)
........++++||||++ +..++.+|+... ....+..... .+|..............+..
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 111135689999999994 344444443210 0001111000 01111111111000000000
Q ss_pred ------------------------------------HHHh----------------------------------------
Q 000114 1555 ------------------------------------RMQA---------------------------------------- 1558 (2158)
Q Consensus 1555 ------------------------------------~~~~---------------------------------------- 1558 (2158)
....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000
Q ss_pred --------------------------------------------------cChHHHHHHH----HhH--hcCCCEEEEec
Q 000114 1559 --------------------------------------------------MTKPTFTAIV----QHA--KNEKPALVFVP 1582 (2158)
Q Consensus 1559 --------------------------------------------------~~k~~~~~i~----~~~--~~~~~~IVFv~ 1582 (2158)
...+....+. ... .++.++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 0011111111 111 45689999999
Q ss_pred ChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-CCce
Q 000114 1583 SRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-GKIK 1661 (2158)
Q Consensus 1583 sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g~i~ 1661 (2158)
++..+..++..|............ ...+.+...+||+|+..+|..+++.|++ |.++
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~-----------------------~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~ 455 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPG-----------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 455 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEE-----------------------C------------------------------CC
T ss_pred cHHHHHHHHHHHHhCCCcceeeee-----------------------EEEccCCcccccccCHHHHHHHHHHhcccCceE
Confidence 999999999877432110000000 1134556778999999999999999999 9999
Q ss_pred EEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChH
Q 000114 1662 VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2158)
Q Consensus 1662 VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~ 1730 (2158)
|||||+++++|+|+|++.+|| +++.|.++..|+||+|| ||. ..|.|++++.....
T Consensus 456 vLvaT~~~~~GiDip~v~~VI----------~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 456 LLIATSVADEGIDIVQCNLVV----------LYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 510 (556)
T ss_dssp EEEEEC-----------CEEE----------EETCCSCHHHHHHC------------CCEEEEESCHHH
T ss_pred EEEEcCchhcCCCchhCCEEE----------EeCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCcch
Confidence 999999999999999999999 56678899999999999 995 68999999887653
No 60
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=5.5e-32 Score=370.60 Aligned_cols=354 Identities=19% Similarity=0.227 Sum_probs=199.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|+.+|+++|.++++.++.+ .|+|+++|||+|||++|++++++.+...... .+.++||++|+++|+.|+.+.+
T Consensus 9 ~g~~~lr~~Q~~~i~~~l~g-~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQG------QKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp TC--CCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCTT------CCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHHHHHHhCccC------CCCeEEEEECCHHHHHHHHHHH
Confidence 48899999999999998876 5699999999999999999999988764321 2358999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh---hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv 647 (2158)
.+++...++++..++|+.....+ ....++|+|+||+++........ ...+.++++|||||||++.+.. .+..++
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~-~~~l~~~~~vViDEaH~~~~~~--~~~~i~ 158 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT-IPSLSIFTLMIFDECHNTSKQH--PYNMIM 158 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS-SCCGGGCSEEEEETGGGCSTTC--HHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc-ccccccccEEEEeCCCcccCcc--cHHHHH
Confidence 99988789999999998764432 23578999999999843333221 1257889999999999987543 355555
Q ss_pred HHHHHHH--hhccccccEEEEccccCC------hHHHHHHHhcc--ccCceEEecCC---------cccccc------ee
Q 000114 648 ARTVRQI--ETTKEHIRLVGLSATLPN------YEDVALFLRVN--LEKGLFYFDNS---------YRPVPL------SQ 702 (2158)
Q Consensus 648 ~r~~~~~--~~~~~~~riv~lSATlpn------~~dv~~~l~~~--~~~~~~~f~~~---------~rpv~l------~~ 702 (2158)
.+++... ......+++++||||+.+ .+.+...+... .....+..... ++|... .+
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 4443321 112467899999999762 12222221110 00000000000 000000 00
Q ss_pred E-----------------------------------------------------EEeeccC-------------------
Q 000114 703 Q-----------------------------------------------------YIGIQVK------------------- 710 (2158)
Q Consensus 703 ~-----------------------------------------------------~~~~~~~------------------- 710 (2158)
. .......
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 0 0000000
Q ss_pred --------------------------------ChhH-HHH---------------------HhhHHHHHHHHHHh---CC
Q 000114 711 --------------------------------KPLQ-RFQ---------------------LMNDLCYEKVVAVA---GK 733 (2158)
Q Consensus 711 --------------------------------~~~~-~~~---------------------~l~~~~~~~i~~~~---~~ 733 (2158)
.... .+. .....+.+.+.+.. .+
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 0000 000 00011112222221 46
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHH
Q 000114 734 HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813 (2158)
Q Consensus 734 ~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~ 813 (2158)
+++||||+++..+..++..|...+.... + ....+.+.|...+||+|+..+|..++
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~-~------------------------~~~~l~G~~~~~~h~~~~~~eR~~v~ 453 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSF-L------------------------KPGILTGRGKTNQNTGMTLPAQKCIL 453 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCS-C------------------------CEEC----------------------
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccc-c------------------------ceeEEEccCCCccccCCCHHHHHHHH
Confidence 7999999999999999999987541100 0 00011233455669999999999999
Q ss_pred HHHhC-CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 814 DLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 814 ~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
+.|++ |.++|||||+++++|||+|++++||+++.|.++ .+|+||+|| ||. ..|.++++++..+..
T Consensus 454 ~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~----------~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 454 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV----------IKMIQTRGR-GRA---RGSKCFLLTSNAGVI 519 (696)
T ss_dssp -------CCSCSEEEESSCCC---CCCSEEEEESCC--C----------CCC-------------CCCEEEEEESCHHHH
T ss_pred HHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCH----------HHHHHhhcc-CcC---CCceEEEEecCCCHH
Confidence 99998 999999999999999999999999995555444 469999999 995 569999999887654
Q ss_pred H
Q 000114 893 Y 893 (2158)
Q Consensus 893 ~ 893 (2158)
.
T Consensus 520 ~ 520 (696)
T 2ykg_A 520 E 520 (696)
T ss_dssp H
T ss_pred H
Confidence 3
No 61
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3e-32 Score=376.43 Aligned_cols=346 Identities=19% Similarity=0.290 Sum_probs=197.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|+..|+|+|.++++.++.+ .|+|+++|||||||++|++|+++.+...... .+.++|||+|+++|+.|+++.|
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~Lvl~Pt~~L~~Q~~~~~ 316 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAG------RKAKVVFLATKVPVYEQQKNVF 316 (797)
T ss_dssp ----CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSS------CCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccc------CCCeEEEEeCCHHHHHHHHHHH
Confidence 47889999999999999877 5699999999999999999999998765321 2458999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh---hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv 647 (2158)
.+++...++++..++|+.....+ ....++|+|+||+++....+.. ....+.++++|||||||++.+.. + +..++
T Consensus 317 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~~iViDEaH~~~~~~-~-~~~i~ 393 (797)
T 4a2q_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG-TLTSLSIFTLMIFDECHNTTGNH-P-YNVLM 393 (797)
T ss_dssp HHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS-SCCCGGGCSEEEETTGGGCSTTS-H-HHHHH
T ss_pred HHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc-cccccccCCEEEEECccccCCCc-c-HHHHH
Confidence 99988889999999999865432 3457899999999984433332 12257889999999999987633 2 66666
Q ss_pred HHHHHHH-hhccccccEEEEccccCC--hH-------H---HHHHHhccccCceEEecCC---------cccccceeEEE
Q 000114 648 ARTVRQI-ETTKEHIRLVGLSATLPN--YE-------D---VALFLRVNLEKGLFYFDNS---------YRPVPLSQQYI 705 (2158)
Q Consensus 648 ~r~~~~~-~~~~~~~riv~lSATlpn--~~-------d---v~~~l~~~~~~~~~~f~~~---------~rpv~l~~~~~ 705 (2158)
.+..... ....+.+++++||||++. .. . +...++.. .+..... .+|.. .+.
T Consensus 394 ~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~----~i~~~~~~~~~l~~~~~~~~~---~~~ 466 (797)
T 4a2q_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ----AISTVRENIQELQRFMNKPEI---DVR 466 (797)
T ss_dssp HHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS----EEECCCTTHHHHHHHSCCCCC---EEE
T ss_pred HHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc----EEecccccHHHHHHhcCCCce---EEE
Confidence 5554322 222556899999999842 11 1 12222211 0100000 00100 000
Q ss_pred eecc-----------------------------------------------------------CCh-------------h
Q 000114 706 GIQV-----------------------------------------------------------KKP-------------L 713 (2158)
Q Consensus 706 ~~~~-----------------------------------------------------------~~~-------------~ 713 (2158)
.+.. ... .
T Consensus 467 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (797)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 0000 000 0
Q ss_pred HH-------------------HHHhh-------------------------------------------HHHHHHHHH--
Q 000114 714 QR-------------------FQLMN-------------------------------------------DLCYEKVVA-- 729 (2158)
Q Consensus 714 ~~-------------------~~~l~-------------------------------------------~~~~~~i~~-- 729 (2158)
.. ...+. ..+.+.+.+
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh
Confidence 00 00000 001111111
Q ss_pred -HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 730 -VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 730 -~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
...++++||||++++.+..++..|........ + ....+...+...+||+|+..+
T Consensus 627 ~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~-----~--------------------~~~~l~G~~~~~~hg~~~~~e 681 (797)
T 4a2q_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNY-----I--------------------KPGVLMGRGRRDQTTGMTLPS 681 (797)
T ss_dssp HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCS-----C--------------------CCEEC----------------
T ss_pred ccCCCCeEEEEECcHHHHHHHHHHHHhCccccc-----c--------------------cceEEEecCCcccCCCCCHHH
Confidence 13368999999999999999999875310000 0 001123455667799999999
Q ss_pred HHHHHHHHhC-CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcC
Q 000114 809 RQLVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2158)
Q Consensus 809 R~~v~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2158)
|..+++.|++ |.++|||||+++++|||+|++++||+ ||++. ++..|+||+|| ||. ..|.++++++
T Consensus 682 R~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~----yd~p~------s~~~~iQr~GR-GR~---~~g~~i~l~~ 747 (797)
T 4a2q_A 682 QKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEYSG------NVTKMIQVRGR-GRA---AGSKCILVTS 747 (797)
T ss_dssp ------------CCSEEEEECC-------CCCSEEEE----ESCCS------CHHHHHTC-----------CCCEEEEEC
T ss_pred HHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE----eCCCC------CHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 9999999999 99999999999999999999999999 77665 78899999999 996 5799999998
Q ss_pred CCcHH
Q 000114 888 HSELR 892 (2158)
Q Consensus 888 ~~~~~ 892 (2158)
..+..
T Consensus 748 ~~~~e 752 (797)
T 4a2q_A 748 KTEVV 752 (797)
T ss_dssp CHHHH
T ss_pred CCcHH
Confidence 86643
No 62
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.98 E-value=1.7e-31 Score=355.90 Aligned_cols=347 Identities=18% Similarity=0.213 Sum_probs=212.4
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+|+|.++++.++.+ .++++++|||||||++|.+|+++.+.......+.++|||+|+++|+.|+++.|++.+.. .++
T Consensus 4 ~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER-LGY 81 (555)
T ss_dssp CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-TTC
T ss_pred CCcHHHHHHHHHHhCC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-CCc
Confidence 6999999999999875 56999999999999999999999888743222348999999999999999999965544 488
Q ss_pred EEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHH-h
Q 000114 1421 RVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA-S 1496 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~-~ 1496 (2158)
++..++|+..... .....++|+|+||+++..++.... ...+.++++|||||||++.+.. .+..++.+..... .
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~~--~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA-IPSLSVFTLMIFDECHNTSKNH--PYNQIMFRYLDHKLG 158 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS-SCCGGGCSEEEETTGGGCSTTC--HHHHHHHHHHHHHTS
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc-ccccccCCEEEEECccccCCcc--hHHHHHHHHHHhhhc
Confidence 9999999886542 234467999999999987776521 1257889999999999997543 3555553332221 1
Q ss_pred -hcCCCceEEEeccCCCCh---------H---HHHHHhccCCCceEecC-------C-CCcccccEEEEecccccchHH-
Q 000114 1497 -QVENKIRIVALSTSLANA---------K---DLGEWIGATSHGLFNFP-------P-GVRPVPLEIHIQGVDITNFEA- 1554 (2158)
Q Consensus 1497 -~~~~~~riV~lSATl~n~---------~---dl~~wl~~~~~~i~~f~-------~-~~rpv~l~~~i~~~~~~~~~~- 1554 (2158)
......++++||||+.+. . ++..+++... +.... . ..+|..............+..
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASV--IATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCI 236 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSE--EECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCee--eeccccCHHHHHhhcCCCceEEEEecCcccChHHHH
Confidence 112468999999999652 1 2333443211 11000 0 011111111111000000000
Q ss_pred -------------------------------------HHHh---------------------------------------
Q 000114 1555 -------------------------------------RMQA--------------------------------------- 1558 (2158)
Q Consensus 1555 -------------------------------------~~~~--------------------------------------- 1558 (2158)
....
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALII 316 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000
Q ss_pred ---------------------------------------------------cChHHHHHHH----HhH--hcCCCEEEEe
Q 000114 1559 ---------------------------------------------------MTKPTFTAIV----QHA--KNEKPALVFV 1581 (2158)
Q Consensus 1559 ---------------------------------------------------~~k~~~~~i~----~~~--~~~~~~IVFv 1581 (2158)
........+. ... .+++++||||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 396 (555)
T 3tbk_A 317 SEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFV 396 (555)
T ss_dssp HHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 0011111111 111 2458999999
Q ss_pred cChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-CCc
Q 000114 1582 PSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-GKI 1660 (2158)
Q Consensus 1582 ~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g~i 1660 (2158)
+++..+..++..|............ ...+.+...+||+|+..+|..+++.|++ |.+
T Consensus 397 ~~~~~~~~l~~~L~~~~~~~~~~~~-----------------------~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~ 453 (555)
T 3tbk_A 397 KTRALVDALKKWIEENPALSFLKPG-----------------------ILTGRGRTNRATGMTLPAQKCVLEAFRASGDN 453 (555)
T ss_dssp SSHHHHHHHHHHHHHCGGGTTCCEE-----------------------ECCC--------------------------CC
T ss_pred CcHHHHHHHHHHHhhCcCcCceeee-----------------------EEEecCCcccccccCHHHHHHHHHHHhcCCCe
Confidence 9999999999888543111000000 0123456778999999999999999999 999
Q ss_pred eEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1661 KVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1661 ~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
+|||||+++++|+|+|++.+|| +++.|.++.+|+||+|| ||. ..|.+++++.....+
T Consensus 454 ~vLvaT~~~~~GlDlp~v~~VI----------~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 454 NILIATSVADEGIDIAECNLVI----------LYEYVGNVIKMIQTRGR-GRA---RDSKCFLLTSSADVI 510 (555)
T ss_dssp SEEEECCCTTCCEETTSCSEEE----------EESCCSSCCCEECSSCC-CTT---TSCEEEEEESCHHHH
T ss_pred eEEEEcchhhcCCccccCCEEE----------EeCCCCCHHHHHHhcCc-CcC---CCceEEEEEcCCCHH
Confidence 9999999999999999999999 55667789999999999 884 689999999876543
No 63
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=4.5e-32 Score=371.69 Aligned_cols=337 Identities=20% Similarity=0.292 Sum_probs=214.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH-HHHHHhh
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV-VGNLSNR 573 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~-~~~~~~~ 573 (2158)
+|+++|.++++.++.+ .++|+++|||+|||++|++++++.+...... ..+.++|||+|+++|+.|+ ++.|.++
T Consensus 7 ~l~~~Q~~~i~~il~g-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEG-KNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp CCCHHHHHHHHHHHSS-CCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----TCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHhC-CCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 7999999999999986 4599999999999999999999988764210 0124799999999999999 9999998
Q ss_pred cccCCcEEEEEeCCCccCH---hhhccccEEEcchhHHH-HHHhcc---CCCccccccceEEeecccccccCChhhHHHH
Q 000114 574 LQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWD-IITRKS---GDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPekld-~l~r~~---~~~~~l~~v~lIIiDEaH~l~d~rg~~le~i 646 (2158)
+.. ++++..++|+..... .....++|+|+||+++. .+.+.+ .....+..+++|||||||++.. ++.+..+
T Consensus 81 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~--~~~~~~i 157 (699)
T 4gl2_A 81 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK--EAVYNNI 157 (699)
T ss_dssp HTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT--TBSSCSH
T ss_pred cCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc--cchHHHH
Confidence 765 588999999876553 23468999999999984 332211 1224578899999999998853 2222223
Q ss_pred HHHHHHH-Hhhcc---------ccccEEEEccccCCh---------HHHH---HHHhccccCceEEecCC------cccc
Q 000114 647 VARTVRQ-IETTK---------EHIRLVGLSATLPNY---------EDVA---LFLRVNLEKGLFYFDNS------YRPV 698 (2158)
Q Consensus 647 v~r~~~~-~~~~~---------~~~riv~lSATlpn~---------~dv~---~~l~~~~~~~~~~f~~~------~rpv 698 (2158)
+.+.+.. ..... +.+++++||||+++. +++. ..+... .+...... +.+.
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~---~i~~~~~~~~~l~~~~~~ 234 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAF---TIKTVKENLDQLKNQIQE 234 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCS---CCCCCCTTHHHHHHHSCC
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCC---EEEeecCchHHHhhhcCC
Confidence 3322221 11112 567999999998751 2222 233220 00000000 0001
Q ss_pred cceeEEEeeccCC--hh-HHH-----------------------------------------------------------
Q 000114 699 PLSQQYIGIQVKK--PL-QRF----------------------------------------------------------- 716 (2158)
Q Consensus 699 ~l~~~~~~~~~~~--~~-~~~----------------------------------------------------------- 716 (2158)
|.. .+..+.... .. ..+
T Consensus 235 p~~-~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (699)
T 4gl2_A 235 PCK-KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQI 313 (699)
T ss_dssp CEE-EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHH
T ss_pred Cce-EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 111 111000000 00 000
Q ss_pred ----------HHh--------------------------------h------------------------HHHHHHHHHH
Q 000114 717 ----------QLM--------------------------------N------------------------DLCYEKVVAV 730 (2158)
Q Consensus 717 ----------~~l--------------------------------~------------------------~~~~~~i~~~ 730 (2158)
..+ . ..+.+.+.+.
T Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~ 393 (699)
T 4gl2_A 314 NDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQ 393 (699)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 000 0 0001111111
Q ss_pred ---hC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCC---
Q 000114 731 ---AG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG--- 803 (2158)
Q Consensus 731 ---~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHag--- 803 (2158)
.+ ++++||||++++.++.++..|.... .+ . .....+..+||+
T Consensus 394 ~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~----~l---~------------------------~~g~~~~~lhg~~~~ 442 (699)
T 4gl2_A 394 YTRTEESARGIIFTKTRQSAYALSQWITENE----KF---A------------------------EVGVKAHHLIGAGHS 442 (699)
T ss_dssp HHHSSSCCCEEEECSCHHHHHHHHHHHHSSC----SC---C-----------------------------CEECCCSCCC
T ss_pred HhcCCCCCcEEEEECcHHHHHHHHHHHHhCc----cc---c------------------------ccCcceEEEECCCCc
Confidence 12 6899999999999999999987530 00 0 011345677888
Q ss_pred -----CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCC
Q 000114 804 -----MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (2158)
Q Consensus 804 -----l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (2158)
|+..+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. |+.+|+||+|||||.|
T Consensus 443 ~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~----~d~p~------s~~~~~Qr~GRArr~g--- 509 (699)
T 4gl2_A 443 SEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR----YGLVT------NEIAMVQARGRARADE--- 509 (699)
T ss_dssp TTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEE----ESCCC------CHHHHHHHHTTSCSSS---
T ss_pred cCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEE----eCCCC------CHHHHHHHcCCCCCCC---
Confidence 99999999999999999999999999999999999999999 77665 7889999999998854
Q ss_pred ccEEEEEcCCC
Q 000114 879 YGEGIIITGHS 889 (2158)
Q Consensus 879 ~G~~iil~~~~ 889 (2158)
+.+++++...
T Consensus 510 -~~~~l~~~~~ 519 (699)
T 4gl2_A 510 -STYVLVAHSG 519 (699)
T ss_dssp -CEEEEEEESS
T ss_pred -ceEEEEEeCC
Confidence 4555555443
No 64
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=4.6e-32 Score=364.91 Aligned_cols=316 Identities=20% Similarity=0.290 Sum_probs=217.1
Q ss_pred CCCCCCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
.+| +||++|.++++.++.+ ..|+|++||||||||++|+++++..+..+ .+++|++||++||.|
T Consensus 365 lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-----------~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 365 LPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-----------FQTAFMVPTSILAIQ 432 (780)
T ss_dssp SSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----------SCEEEECSCHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHH
Confidence 467 8999999999998764 24799999999999999999999988643 379999999999999
Q ss_pred HHHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccC
Q 000114 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2158)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~ 638 (2158)
+++.+.+++...|++|..++|+.....+. ...++|+|+||+.+. . ...+.++++|||||+|+++..
T Consensus 433 ~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~---~----~~~~~~l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 433 HYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ---E----DVHFKNLGLVIIDEQHRFGVK 505 (780)
T ss_dssp HHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH---H----CCCCSCCCEEEEESCCCC---
T ss_pred HHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh---h----hhhccCCceEEecccchhhHH
Confidence 99999999988899999999998755431 135899999999652 1 135778999999999997532
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCC-cccccceeEEEeeccCChhHHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS-YRPVPLSQQYIGIQVKKPLQRFQ 717 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~~~~~~~ 717 (2158)
... .+......+++++||||+.. ..++........ ....+.. ....++...+ ..... .
T Consensus 506 qr~-----------~l~~~~~~~~vL~mSATp~p-~tl~~~~~g~~~--~s~i~~~p~~r~~i~~~~--~~~~~----~- 564 (780)
T 1gm5_A 506 QRE-----------ALMNKGKMVDTLVMSATPIP-RSMALAFYGDLD--VTVIDEMPPGRKEVQTML--VPMDR----V- 564 (780)
T ss_dssp --C-----------CCCSSSSCCCEEEEESSCCC-HHHHHHHTCCSS--CEEECCCCSSCCCCEECC--CCSST----H-
T ss_pred HHH-----------HHHHhCCCCCEEEEeCCCCH-HHHHHHHhCCcc--eeeeeccCCCCcceEEEE--eccch----H-
Confidence 110 11123457899999999643 444433322211 1111110 0011222111 11111 1
Q ss_pred HhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh-h-cc
Q 000114 718 LMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD-L-LP 794 (2158)
Q Consensus 718 ~l~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l-l~ 794 (2158)
..+++.+.+.. .+++++|||++..+.+.+... ..+.+. ..|.. . ..
T Consensus 565 ---~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~--------------------~a~~l~--------~~L~~~~~~~ 613 (780)
T 1gm5_A 565 ---NEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVK--------------------SAVEMY--------EYLSKEVFPE 613 (780)
T ss_dssp ---HHHHHHHHHHTTTSCCBCCBCCCC--------C--------------------HHHHHH--------HSGGGSCC--
T ss_pred ---HHHHHHHHHHHhcCCcEEEEecchhhhhhhhHH--------------------HHHHHH--------HHHHhhhcCC
Confidence 12233344333 477999999988765322000 000000 01111 1 13
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCC
Q 000114 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2158)
Q Consensus 795 ~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2158)
.+++.+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. .+...|.||+|||||.
T Consensus 614 ~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi----~d~~r-----~~l~~l~Qr~GRaGR~ 684 (780)
T 1gm5_A 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPER-----FGLAQLHQLRGRVGRG 684 (780)
T ss_dssp -CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCSS-----SCTTHHHHHHHTSCCS
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE----eCCCC-----CCHHHHHHHhcccCcC
Confidence 57889999999999999999999999999999999999999999999998 66653 2567899999999998
Q ss_pred CCCCccEEEEEcCC
Q 000114 875 QYDSYGEGIIITGH 888 (2158)
Q Consensus 875 g~d~~G~~iil~~~ 888 (2158)
| ..|.|++++++
T Consensus 685 g--~~g~~ill~~~ 696 (780)
T 1gm5_A 685 G--QEAYCFLVVGD 696 (780)
T ss_dssp S--TTCEEECCCCS
T ss_pred C--CCCEEEEEECC
Confidence 7 66999999874
No 65
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=1.2e-30 Score=360.34 Aligned_cols=347 Identities=19% Similarity=0.248 Sum_probs=195.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|+..|+|+|.++++.++.+ .|+++++|||||||++|.+|++..+.......+.++|||+|+++|+.|+++.|++.+..
T Consensus 245 g~~~l~~~Q~~~i~~~l~~-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~- 322 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER- 322 (797)
T ss_dssp ---CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-
T ss_pred CCCCCCHHHHHHHHHHHhC-CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc-
Confidence 4789999999999999875 56999999999999999999999988743221338999999999999999999966554
Q ss_pred CCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccc-cccceeEEEecccccccCCCCChHHHHHHHHHH
Q 000114 1418 LGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (2158)
.++++..++|+..... .....++|+|+||+++...++. ... .+.++++|||||||++.+.. .+..++.++..
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~~iViDEaH~~~~~~--~~~~i~~~~~~ 398 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYLE 398 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEETTGGGCSTTS--HHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHh--ccccccccCCEEEEECccccCCCc--cHHHHHHHHHH
Confidence 3789999999885542 3445779999999999877764 222 57889999999999987543 35555544332
Q ss_pred HH-hhcCCCceEEEeccCCCC--h----------HHHHHHhccCCCceEecCCC--------CcccccEEEEec------
Q 000114 1494 IA-SQVENKIRIVALSTSLAN--A----------KDLGEWIGATSHGLFNFPPG--------VRPVPLEIHIQG------ 1546 (2158)
Q Consensus 1494 i~-~~~~~~~riV~lSATl~n--~----------~dl~~wl~~~~~~i~~f~~~--------~rpv~l~~~i~~------ 1546 (2158)
.. .......++++||||+.. . ..+...++... +...... .+|......+..
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~--i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 476 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQA--ISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSE--EECCCTTHHHHHHHSCCCCCEEEECCCCSCCHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcE--EecccccHHHHHHhcCCCceEEEecCCCCCcHH
Confidence 21 112456899999999953 1 12223333211 0000000 011111111110
Q ss_pred -------------------------------ccccc---hHHH-----------------------------H-------
Q 000114 1547 -------------------------------VDITN---FEAR-----------------------------M------- 1556 (2158)
Q Consensus 1547 -------------------------------~~~~~---~~~~-----------------------------~------- 1556 (2158)
+.... +... +
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 556 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000 0
Q ss_pred ---------------Hh------------------------------------cChHHHHHHH----HhH--hcCCCEEE
Q 000114 1557 ---------------QA------------------------------------MTKPTFTAIV----QHA--KNEKPALV 1579 (2158)
Q Consensus 1557 ---------------~~------------------------------------~~k~~~~~i~----~~~--~~~~~~IV 1579 (2158)
.. ...+....+. ... .++.++||
T Consensus 557 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLI 636 (797)
T 4a2q_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (797)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEE
T ss_pred hhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEE
Confidence 00 0001111111 111 45688999
Q ss_pred EecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-C
Q 000114 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2158)
Q Consensus 1580 Fv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g 1658 (2158)
||++++.+..++..|............ ...+.+...+||+|+..+|..+++.|++ |
T Consensus 637 F~~~~~~~~~L~~~L~~~~~~~~~~~~-----------------------~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g 693 (797)
T 4a2q_A 637 FAKTRALVSALKKCMEENPILNYIKPG-----------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (797)
T ss_dssp EESSHHHHHHHHHHHHTCSTTCSCCCE-----------------------EC----------------------------
T ss_pred EECcHHHHHHHHHHHHhCcccccccce-----------------------EEEecCCcccCCCCCHHHHHHHHHHhhccC
Confidence 999999999999877542111110000 1134566788999999999999999999 9
Q ss_pred CceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1659 ~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
.++|||||+++++|||+|++.+|| +++.|.++..|+||+|| ||. ..|.|++++....
T Consensus 694 ~~~vLVaT~~~~~GIDlp~v~~VI----------~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 694 DNRLLIATSVADEGIDIVQCNLVV----------LYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTE 750 (797)
T ss_dssp CCSEEEEECC-------CCCSEEE----------EESCCSCHHHHHTC-----------CCCEEEEECCHH
T ss_pred CceEEEEcCchhcCCCchhCCEEE----------EeCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCCc
Confidence 999999999999999999999999 56677899999999999 995 6899999987764
No 66
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=6.8e-31 Score=359.80 Aligned_cols=350 Identities=17% Similarity=0.189 Sum_probs=196.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
||..|+|+|.++++.++.+ .|+|+++|||||||++|.++++..+.....+.+.++|||+|+++|+.|+++.+++.+ ..
T Consensus 10 g~~~lr~~Q~~~i~~~l~g-~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~-~~ 87 (696)
T 2ykg_A 10 SPFKPRNYQLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF-ER 87 (696)
T ss_dssp C--CCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT-TT
T ss_pred CCCCccHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh-cc
Confidence 6889999999999999874 569999999999999999999988876322212389999999999999999999554 44
Q ss_pred CCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccc-cccceeEEEecccccccCCCCChHHHHHHHHHH
Q 000114 1418 LGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (2158)
.++++..++|+.... ......++|+|+||+++...+.. ... .+.++++|||||||++.+.. .+..++.++..
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~--~~~~~l~~~~~vViDEaH~~~~~~--~~~~i~~~~l~ 163 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDECHNTSKQH--PYNMIMFNYLD 163 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT--TSSCCGGGCSEEEEETGGGCSTTC--HHHHHHHHHHH
T ss_pred CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc--CcccccccccEEEEeCCCcccCcc--cHHHHHHHHHH
Confidence 588999999987543 22335679999999999877664 222 47889999999999997443 45555543322
Q ss_pred H--HhhcCCCceEEEeccCCCC---------hHHHHHHhccCCCceEecCCCC---------cccccEEEEecccc----
Q 000114 1494 I--ASQVENKIRIVALSTSLAN---------AKDLGEWIGATSHGLFNFPPGV---------RPVPLEIHIQGVDI---- 1549 (2158)
Q Consensus 1494 i--~~~~~~~~riV~lSATl~n---------~~dl~~wl~~~~~~i~~f~~~~---------rpv~l~~~i~~~~~---- 1549 (2158)
. ........++++||||+.+ ...+...+.......+...... +|............
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 1 1222457899999999863 1222222211111111100000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 000114 1550 -------------------------------------------------------------------------------- 1549 (2158)
Q Consensus 1550 -------------------------------------------------------------------------------- 1549 (2158)
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence
Q ss_pred ---------------------------cchHHHHHh-----------------cChHHHHHHHHhH------hcCCCEEE
Q 000114 1550 ---------------------------TNFEARMQA-----------------MTKPTFTAIVQHA------KNEKPALV 1579 (2158)
Q Consensus 1550 ---------------------------~~~~~~~~~-----------------~~k~~~~~i~~~~------~~~~~~IV 1579 (2158)
......+.. ........+...+ .+++++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 000000000 0111112222111 25678999
Q ss_pred EecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-C
Q 000114 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2158)
Q Consensus 1580 Fv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g 1658 (2158)
||+++..|+.++..|............ ...+.|...+||+|+..+|..+++.|++ |
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------------~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g 460 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFLKPG-----------------------ILTGRGKTNQNTGMTLPAQKCILDAFKASG 460 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSCCEE-----------------------C-----------------------------
T ss_pred EeCcHHHHHHHHHHHHhCCCcccccee-----------------------EEEccCCCccccCCCHHHHHHHHHHHHhcC
Confidence 999999999999888542110000000 0122344555889999999999999998 9
Q ss_pred CceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChH
Q 000114 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2158)
Q Consensus 1659 ~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~ 1730 (2158)
.++|||||+++++|||+|++.+|| +++.|.+..+|+||+|| ||. ..|.|++++...+.
T Consensus 461 ~~~vLVaT~v~~~GiDip~v~~VI----------~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 461 DHNILIATSVADEGIDIAQCNLVI----------LYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGV 518 (696)
T ss_dssp CCSCSEEEESSCCC---CCCSEEE----------EESCC--CCCC-------------CCCEEEEEESCHHH
T ss_pred CccEEEEechhhcCCcCccCCEEE----------EeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCH
Confidence 999999999999999999999999 55667788999999999 995 67999999887654
No 67
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.4e-30 Score=340.69 Aligned_cols=327 Identities=20% Similarity=0.306 Sum_probs=225.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+|+|.++++.++.+ ++++++|||+|||++++++++..+.. .+.++||++|+++|+.|+.+.+.+.+
T Consensus 9 ~l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~~~~----------~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRLTK----------YGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHHHHH----------SCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 7999999999999887 79999999999999999999988762 13479999999999999999999987
Q ss_pred ccCCcEEEEEeCCCccCHhh--hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQ--IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~--~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~ 652 (2158)
+..+.++..++|+....... ...++|+|+||+.+....... ...+.++++||+||||.+.+.. ....+...+
T Consensus 77 ~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~--~~~~~~~~~vIiDEaH~~~~~~--~~~~~~~~~-- 150 (494)
T 1wp9_A 77 NLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG--RISLEDVSLIVFDEAHRAVGNY--AYVFIAREY-- 150 (494)
T ss_dssp CSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT--SCCTTSCSEEEEETGGGCSTTC--HHHHHHHHH--
T ss_pred CcchhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcC--CcchhhceEEEEECCcccCCCC--cHHHHHHHH--
Confidence 54455899999987654422 457899999999984333322 2356789999999999987532 222333322
Q ss_pred HHhhccccccEEEEccccCC-hHHHHHHHhccccCceEEecCCccc----c--cceeEEEeeccCChhHHH---------
Q 000114 653 QIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRP----V--PLSQQYIGIQVKKPLQRF--------- 716 (2158)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn-~~dv~~~l~~~~~~~~~~f~~~~rp----v--~l~~~~~~~~~~~~~~~~--------- 716 (2158)
.......++++||||+++ .+++..++..-..... .+.....+ . +....+...........+
T Consensus 151 --~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (494)
T 1wp9_A 151 --KRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHI-EYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLR 227 (494)
T ss_dssp --HHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEE-EECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred --HhcCCCCeEEEEecCCCCCcHHHHHHHHhcChhee-eccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHH
Confidence 223567899999999874 3444444432211111 11111110 0 000011100000000000
Q ss_pred -----------------------------------------------------------------------HH-------
Q 000114 717 -----------------------------------------------------------------------QL------- 718 (2158)
Q Consensus 717 -----------------------------------------------------------------------~~------- 718 (2158)
..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (494)
T 1wp9_A 228 DALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEE 307 (494)
T ss_dssp HHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence 00
Q ss_pred ------------------------------------hhHHHHHHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHhhc
Q 000114 719 ------------------------------------MNDLCYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTALE 759 (2158)
Q Consensus 719 ------------------------------------l~~~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (2158)
-...+.+.+.+. ..++++||||+++..+..++..|...+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~- 386 (494)
T 1wp9_A 308 AKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI- 386 (494)
T ss_dssp HHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC-
T ss_pred hccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC-
Confidence 000111222222 3478999999999999999999887532
Q ss_pred ccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecC--------CCCHHHHHHHHHHHhCCCceEEEechhhh
Q 000114 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA--------GMTRGDRQLVEDLFGDGHVQVLVSTATLA 831 (2158)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHa--------gl~~~~R~~v~~~F~~g~i~VLVaT~tla 831 (2158)
.+..+|| +|+..+|..+++.|++|.++|||||++++
T Consensus 387 ------------------------------------~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~ 430 (494)
T 1wp9_A 387 ------------------------------------KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGE 430 (494)
T ss_dssp ------------------------------------CEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGG
T ss_pred ------------------------------------CcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccc
Confidence 3455566 99999999999999999999999999999
Q ss_pred hccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 832 WGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 832 ~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
+|+|+|++++||+ |+++. ++..|+||+|||||.| . |.+++++.....+
T Consensus 431 ~Gldl~~~~~Vi~----~d~~~------~~~~~~Qr~GR~~R~g--~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 431 EGLDVPEVDLVVF----YEPVP------SAIRSIQRRGRTGRHM--P-GRVIILMAKGTRD 478 (494)
T ss_dssp GGGGSTTCCEEEE----SSCCH------HHHHHHHHHTTSCSCC--C-SEEEEEEETTSHH
T ss_pred cCCCchhCCEEEE----eCCCC------CHHHHHHHHhhccCCC--C-ceEEEEEecCCHH
Confidence 9999999999999 55543 6778999999999987 3 9999998876543
No 68
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=9.3e-31 Score=364.71 Aligned_cols=348 Identities=19% Similarity=0.290 Sum_probs=197.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|+.+|+++|.++++.++.+ .++++++|||+|||++|++++++.+..... ..+.++|||+|+++|+.|+++.|
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g-~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~------~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp ----CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHTTTTTCCS------SCCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEeCCCchHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHH
Confidence 46789999999999999876 569999999999999999999988765421 12458999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCH---hhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv 647 (2158)
.+++...++++..++|+..... .....++|+|+||+++....+.. ....+.++++|||||||++.... + +..++
T Consensus 317 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~-~~~~l~~~~liViDEaH~~~~~~-~-~~~i~ 393 (936)
T 4a2w_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG-TLTSLSIFTLMIFDECHNTTGNH-P-YNVLM 393 (936)
T ss_dssp HHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS-SCCCGGGCSEEEEETGGGCSTTC-H-HHHHH
T ss_pred HHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC-ccccccCCCEEEEECccccCCCc-c-HHHHH
Confidence 9998888999999999985443 23457899999999984443332 12257889999999999987543 2 66666
Q ss_pred HHHHHHH-hhccccccEEEEccccCC--hHH----------HHHHHhccccCceEEecCC-------cccccceeEEEee
Q 000114 648 ARTVRQI-ETTKEHIRLVGLSATLPN--YED----------VALFLRVNLEKGLFYFDNS-------YRPVPLSQQYIGI 707 (2158)
Q Consensus 648 ~r~~~~~-~~~~~~~riv~lSATlpn--~~d----------v~~~l~~~~~~~~~~f~~~-------~rpv~l~~~~~~~ 707 (2158)
.++.... ....+..++++||||++. ..+ +...+... .+..... +.+.+.. .+..+
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~----~i~~~~~~~~~l~~~~~~p~~-~~~~~ 468 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ----AISTVRENIQELQRFMNKPEI-DVRLV 468 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS----EEECCCSSHHHHHHHSCCCCE-EEEEC
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc----eeecccccHHHHHHhccCCcc-eEEec
Confidence 5554322 222556899999999842 111 11222210 0110000 0000000 00000
Q ss_pred cc-----------------------------------------------------------CCh-------------hH-
Q 000114 708 QV-----------------------------------------------------------KKP-------------LQ- 714 (2158)
Q Consensus 708 ~~-----------------------------------------------------------~~~-------------~~- 714 (2158)
.. ... ..
T Consensus 469 ~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~ 548 (936)
T 4a2w_A 469 KRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 548 (936)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 00 000 00
Q ss_pred ------------------HHHHhh-------------------------------------------HHHHHHHHHH---
Q 000114 715 ------------------RFQLMN-------------------------------------------DLCYEKVVAV--- 730 (2158)
Q Consensus 715 ------------------~~~~l~-------------------------------------------~~~~~~i~~~--- 730 (2158)
....+. ..+.+.+.+.
T Consensus 549 l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~ 628 (936)
T 4a2w_A 549 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY 628 (936)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcc
Confidence 000000 0011111121
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH
Q 000114 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2158)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~ 810 (2158)
..++++||||++++.+..++..|.....-.. + ....+.+.+...+||+|+..+|.
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~-i------------------------k~~~l~G~~~~~~hg~m~~~eR~ 683 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNY-I------------------------KPGVLMGRGRRDQTTGMTLPSQK 683 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSS-C------------------------CCEEC------------------
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccc-c------------------------ceeEEecCCCcccCCCCCHHHHH
Confidence 2357999999999999999999987410000 0 00112334566779999999999
Q ss_pred HHHHHHhC-CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 811 LVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 811 ~v~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
.+++.|++ |.++|||||+++++|||+|++++||+ ||++. |+..|+||+|| ||. ..|.++++++..
T Consensus 684 ~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~----yD~p~------s~~~~iQr~GR-GR~---~~g~vi~Li~~~ 749 (936)
T 4a2w_A 684 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEYSG------NVTKMIQVRGR-GRA---AGSKCILVTSKT 749 (936)
T ss_dssp ----------CCSEEEEECC------CCCCSEEEE----ESCCS------CSHHHHCC-----------CCCEEEEESCH
T ss_pred HHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE----eCCCC------CHHHHHHhcCC-CCC---CCCEEEEEEeCC
Confidence 99999999 99999999999999999999999999 56554 67789999999 996 568999998876
Q ss_pred cHH
Q 000114 890 ELR 892 (2158)
Q Consensus 890 ~~~ 892 (2158)
+..
T Consensus 750 t~e 752 (936)
T 4a2w_A 750 EVV 752 (936)
T ss_dssp HHH
T ss_pred CHH
Confidence 543
No 69
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.7e-31 Score=357.39 Aligned_cols=317 Identities=19% Similarity=0.279 Sum_probs=218.5
Q ss_pred CCCCCCHHHHHHHHHHhcC-----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~-----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
+| .|+++|.++++.++.+ ..|++++||||||||++|++|++..+.. +. +++|++||++|+.|+++.+++
T Consensus 366 pf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~--qvlvlaPtr~La~Q~~~~l~~ 439 (780)
T 1gm5_A 366 PF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF--QTAFMVPTSILAIQHYRRTVE 439 (780)
T ss_dssp SS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS--CEEEECSCHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHH
Confidence 47 8999999999998763 2479999999999999999999988865 34 899999999999999999997
Q ss_pred HhcCCCCcEEEEEcCCcchhhh-----ccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHH
Q 000114 1413 KFGQGLGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1413 ~f~~~~g~~v~~ltG~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e 1485 (2158)
.+.. .|+++..++|+.+...+ .+. .++|+|+||+.+.. ...+.+++++|+||+|+++...
T Consensus 440 ~~~~-~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~~~~~~l~lVVIDEaHr~g~~q----- 506 (780)
T 1gm5_A 440 SFSK-FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------DVHFKNLGLVIIDEQHRFGVKQ----- 506 (780)
T ss_dssp HHTC-SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------CCCCSCCCEEEEESCCCC---------
T ss_pred Hhhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------hhhccCCceEEecccchhhHHH-----
Confidence 7654 48899999999875432 122 46999999987632 3457899999999999985321
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCChHHHH-HHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHH
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLG-EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~-~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~ 1564 (2158)
+ ..........++++||||+... .++ .+.+.....+....|..+. ++...+.. ... ....+
T Consensus 507 ----r--~~l~~~~~~~~vL~mSATp~p~-tl~~~~~g~~~~s~i~~~p~~r~-~i~~~~~~--~~~--------~~~l~ 568 (780)
T 1gm5_A 507 ----R--EALMNKGKMVDTLVMSATPIPR-SMALAFYGDLDVTVIDEMPPGRK-EVQTMLVP--MDR--------VNEVY 568 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCCCH-HHHHHHTCCSSCEEECCCCSSCC-CCEECCCC--SST--------HHHHH
T ss_pred ----H--HHHHHhCCCCCEEEEeCCCCHH-HHHHHHhCCcceeeeeccCCCCc-ceEEEEec--cch--------HHHHH
Confidence 1 0111223468999999997543 333 3334333333332232221 22222211 111 12234
Q ss_pred HHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHH-H-hcccEEEecCC
Q 000114 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA-T-LRHGVGYLHEG 1642 (2158)
Q Consensus 1565 ~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~-~-l~~gv~~~H~~ 1642 (2158)
..+...+..+++++|||++.+.++.+.. .......+. |.. . .+.+|+.+||+
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~---------------------~~a~~l~~~-----L~~~~~~~~~v~~lHG~ 622 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNV---------------------KSAVEMYEY-----LSKEVFPEFKLGLMHGR 622 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC-----------------------------CHHHHHHHS-----GGGSCC---CBCCCCSS
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhH---------------------HHHHHHHHH-----HHhhhcCCCcEEEEeCC
Confidence 4555555778999999998765432100 000001111 111 1 13568999999
Q ss_pred CCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcC-CCHHHHHHhhccCCCCCCCCceEE
Q 000114 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1643 l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~-~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| +.+.| ++...|.||+|||||.| ..|.|
T Consensus 623 m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI----------i~d~~r~~l~~l~Qr~GRaGR~g--~~g~~ 690 (780)
T 1gm5_A 623 LSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV----------IENPERFGLAQLHQLRGRVGRGG--QEAYC 690 (780)
T ss_dssp SCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE----------BCSCSSSCTTHHHHHHHTSCCSS--TTCEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE----------EeCCCCCCHHHHHHHhcccCcCC--CCCEE
Confidence 9999999999999999999999999999999999999888 23333 36788999999999986 78999
Q ss_pred EEEecCCh
Q 000114 1722 VILCHAPR 1729 (2158)
Q Consensus 1722 iil~~~~~ 1729 (2158)
++++.+..
T Consensus 691 ill~~~~~ 698 (780)
T 1gm5_A 691 FLVVGDVG 698 (780)
T ss_dssp ECCCCSCC
T ss_pred EEEECCCC
Confidence 99987433
No 70
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=1.1e-31 Score=376.51 Aligned_cols=280 Identities=15% Similarity=0.178 Sum_probs=197.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||. | ++|.++++.++.+ .|++++||||||||+ |.+|++..+... +.++||++||++||.|+++.+
T Consensus 54 ~g~~-p-~iQ~~ai~~il~g-~dvlv~apTGSGKTl-~~lp~l~~~~~~----------~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 54 VGEP-R-AIQKMWAKRILRK-ESFAATAPTGVGKTS-FGLAMSLFLALK----------GKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp TCSC-C-HHHHHHHHHHHTT-CCEECCCCBTSCSHH-HHHHHHHHHHTT----------SCCEEEEESCHHHHHHHHHHH
T ss_pred cCCC-H-HHHHHHHHHHHhC-CCEEEEcCCCCCHHH-HHHHHHHHHhhc----------CCeEEEEeccHHHHHHHHHHH
Confidence 4898 9 9999999999976 569999999999998 888888776542 358999999999999999999
Q ss_pred HhhcccCCc----EEEEEeCCCccCHh-----hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChh
Q 000114 571 SNRLQMYDV----KVRELSGDQTLTRQ-----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641 (2158)
Q Consensus 571 ~~~~~~~gi----~v~~l~Gd~~~~~~-----~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~ 641 (2158)
++++...++ +++.++|+.....+ ....++|+|+||+++..+.++ ++++++|||||||++.+ +|.
T Consensus 120 ~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~-~~~ 192 (1054)
T 1gku_B 120 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK-ASK 192 (1054)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT-STH
T ss_pred HHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh-ccc
Confidence 999888888 89999999877552 233499999999987443332 55899999999999987 788
Q ss_pred hHHHHHHHHHHH----HhhccccccEEEEccccCChHHHHHHHhccccCceEEecC-CcccccceeEEEeeccCChhHHH
Q 000114 642 VLESIVARTVRQ----IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN-SYRPVPLSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 642 ~le~iv~r~~~~----~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~-~~rpv~l~~~~~~~~~~~~~~~~ 716 (2158)
.++.++.++... ........+++++|||+++..++...+...+.. +.... ......+.+.++ ...+ .
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~--i~v~~~~~~~~~i~~~~~--~~~k----~ 264 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN--FDIGSSRITVRNVEDVAV--NDES----I 264 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC--CCCSCCEECCCCEEEEEE--SCCC----T
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE--EEccCcccCcCCceEEEe--chhH----H
Confidence 888877655210 011245678999999998754333322211110 01111 111122333333 1111 1
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
..+.. +.... ++++||||+|++.|+.++..|... ..
T Consensus 265 ~~L~~-----ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~--------------------------------------~~ 300 (1054)
T 1gku_B 265 STLSS-----ILEKL-GTGGIIYARTGEEAEEIYESLKNK--------------------------------------FR 300 (1054)
T ss_dssp TTTHH-----HHTTS-CSCEEEEESSHHHHHHHHHTTTTS--------------------------------------SC
T ss_pred HHHHH-----HHhhc-CCCEEEEEcCHHHHHHHHHHHhhc--------------------------------------cC
Confidence 11111 11111 578999999999999988776431 24
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEe----chhhhhccCCCce-EEEEecccc
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPAH-TVIIKGTQI 848 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~v-~vVI~~~~~ 848 (2158)
++.+||+| ..+++.|++|.++|||| |+++++|||+|+| ++||+++.|
T Consensus 301 v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 301 IGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp EEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred eeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 77889998 37889999999999999 9999999999995 999995555
No 71
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=1e-30 Score=365.96 Aligned_cols=279 Identities=17% Similarity=0.158 Sum_probs=193.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|| +|+++|.++++.++.+. +++++||||||||++|+++++..+.. +.++||++||++||.|+++.+
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~-dvlv~ApTGSGKTl~~l~~il~~~~~-----------~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMTALWLARK-----------GKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTC-CEEECCSTTCCHHHHHHHHHHHHHTT-----------TCCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHcCC-CEEEEeCCCCcHHHHHHHHHHHHHhc-----------CCeEEEEechHHHHHHHHHHH
Confidence 367 69999999999998874 69999999999999998888887632 348999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh------h-ccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccC----
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ------I-EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDN---- 638 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~------~-~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~---- 638 (2158)
.++. ..++++..++|+.+...+. . ..++|+|+||+++ +.+.+ ..++++++|||||||++...
T Consensus 142 ~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 142 QKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp HTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHH
T ss_pred HHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccc
Confidence 9955 7789999999998764321 1 2489999999997 43332 34568999999999987641
Q ss_pred --------Chhh-HHHHHHHHHH--HHhhcc--ccccEEEEcccc-CCh---HHHHHHHhccccCceEEecCCcccccce
Q 000114 639 --------RGPV-LESIVARTVR--QIETTK--EHIRLVGLSATL-PNY---EDVALFLRVNLEKGLFYFDNSYRPVPLS 701 (2158)
Q Consensus 639 --------rg~~-le~iv~r~~~--~~~~~~--~~~riv~lSATl-pn~---~dv~~~l~~~~~~~~~~f~~~~rpv~l~ 701 (2158)
+.+. +..++..+.. ...... ...|++++|||+ |.. .....++.... ......+..+.
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v------~~~~~~~~~i~ 289 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV------GRLVSVARNIT 289 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCC------CBCCCCCCCEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEe------ccCCCCcCCce
Confidence 1112 3333332210 000111 678999999994 432 11222322111 11112222344
Q ss_pred eEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhh
Q 000114 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT 781 (2158)
Q Consensus 702 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 781 (2158)
+.++.. .+ ...+ ...+.. . ++++||||++++.+..++..|...+.
T Consensus 290 ~~~~~~--~k----~~~L----~~ll~~-~-~~~~LVF~~s~~~a~~l~~~L~~~g~----------------------- 334 (1104)
T 4ddu_A 290 HVRISS--RS----KEKL----VELLEI-F-RDGILIFAQTEEEGKELYEYLKRFKF----------------------- 334 (1104)
T ss_dssp EEEESC--CC----HHHH----HHHHHH-H-CSSEEEEESSSHHHHHHHHHHHHTTC-----------------------
T ss_pred eEEEec--CH----HHHH----HHHHHh-c-CCCEEEEECcHHHHHHHHHHHHhCCC-----------------------
Confidence 444322 11 1111 222222 2 58999999999999999999987542
Q ss_pred hccCcchhhhhccCCeE-EecCCCCHHHHHHHHHHHhCCCceEEEe----chhhhhccCCCc-eEEEEeccccc
Q 000114 782 DMVKSNDLKDLLPYGFA-IHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVIIKGTQIY 849 (2158)
Q Consensus 782 ~~~~~~~l~~ll~~gv~-~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vVI~~~~~y 849 (2158)
.+. .+|| +|+. ++.|++|+++|||| |+++++|||+|+ +++||+++.|-
T Consensus 335 --------------~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 335 --------------NVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp --------------CEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred --------------CeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 244 5688 3555 99999999999999 999999999999 99999954443
No 72
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=9.9e-31 Score=358.34 Aligned_cols=338 Identities=17% Similarity=0.202 Sum_probs=216.4
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC-CCceEEEEEcccHHHHHHH-HHHHHHHhcCCC
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-TGVMRAVYIAPLEALAKER-YRDWEIKFGQGL 1418 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~-~~~~~~v~IaP~raLa~q~-~~~~~~~f~~~~ 1418 (2158)
.|+|+|.++++.++.+ .++++++|||+|||++|++|++..+..... +.+.++|||+|+++|+.|+ ++.+++.++.
T Consensus 7 ~l~~~Q~~~i~~il~g-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEG-KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSS-CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--
T ss_pred CccHHHHHHHHHHHhC-CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--
Confidence 6999999999999985 569999999999999999999988876321 1112899999999999999 9999966553
Q ss_pred CcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhh----hccccccceeEEEecccccccCCCCChHHHHHHHH
Q 000114 1419 GMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRW----KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~----~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl 1491 (2158)
++++..++|+.... ......++|+|+||+++...+.+. .....+.++++|||||||++.. ++.+..++.++
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~--~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK--EAVYNNIMRHY 161 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT--TBSSCSHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc--cchHHHHHHHH
Confidence 47899999987654 223457799999999998766321 1234578899999999998853 22333333322
Q ss_pred HHH-HhhcC---------CCceEEEeccCCCCh------------HHHHHHhccCCCceEecCCC--------CcccccE
Q 000114 1492 RYI-ASQVE---------NKIRIVALSTSLANA------------KDLGEWIGATSHGLFNFPPG--------VRPVPLE 1541 (2158)
Q Consensus 1492 ~~i-~~~~~---------~~~riV~lSATl~n~------------~dl~~wl~~~~~~i~~f~~~--------~rpv~l~ 1541 (2158)
... ..... ...++++||||+.+. .++..+++... +...... .+|....
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~--i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFT--IKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSC--CCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCE--EEeecCchHHHhhhcCCCceEE
Confidence 111 00011 467999999999862 22334444311 1100000 1111111
Q ss_pred EEEecccccc----------------------------hHHHH-------------------------------------
Q 000114 1542 IHIQGVDITN----------------------------FEARM------------------------------------- 1556 (2158)
Q Consensus 1542 ~~i~~~~~~~----------------------------~~~~~------------------------------------- 1556 (2158)
.......... +....
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110000000 00000
Q ss_pred ------------------------------------------------------------HhcChHHHHHHHHhHh--c-
Q 000114 1557 ------------------------------------------------------------QAMTKPTFTAIVQHAK--N- 1573 (2158)
Q Consensus 1557 ------------------------------------------------------------~~~~k~~~~~i~~~~~--~- 1573 (2158)
..........+..... +
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 0000001111222212 2
Q ss_pred CCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCC--------CCH
Q 000114 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG--------LNK 1645 (2158)
Q Consensus 1574 ~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~--------l~~ 1645 (2158)
++++||||++++.++.++..|...... ...+..+..+||+ |+.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l-----------------------------~~~g~~~~~lhg~~~~~~~~~~~~ 450 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKF-----------------------------AEVGVKAHHLIGAGHSSEFKPMTQ 450 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSC-----------------------------C-----CEECCCSCCCTTCCCCCH
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccc-----------------------------cccCcceEEEECCCCccCCCCCCH
Confidence 789999999999999999877432000 0023457899999 999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
.+|..+++.|++|.++|||||+++++|||+|++.+|| +++.|.++.+|+||+|||||.| +.+++++
T Consensus 451 ~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI----------~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~ 516 (699)
T 4gl2_A 451 NEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI----------RYGLVTNEIAMVQARGRARADE----STYVLVA 516 (699)
T ss_dssp HHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCE----------EESCCCCHHHHHHHHTTSCSSS----CEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEE----------EeCCCCCHHHHHHHcCCCCCCC----ceEEEEE
Confidence 9999999999999999999999999999999999999 5667889999999999988754 4555555
Q ss_pred cCC
Q 000114 1726 HAP 1728 (2158)
Q Consensus 1726 ~~~ 1728 (2158)
...
T Consensus 517 ~~~ 519 (699)
T 4gl2_A 517 HSG 519 (699)
T ss_dssp ESS
T ss_pred eCC
Confidence 544
No 73
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=1.5e-29 Score=356.68 Aligned_cols=309 Identities=18% Similarity=0.255 Sum_probs=225.7
Q ss_pred CCCCCCHHHHHHHHHHHc----CC-CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALS----SA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~----~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
+| ++||+|.++++.++. +. .++|+|||||+|||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 601 ~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-----------g~~vlvlvPt~~La~Q~ 668 (1151)
T 2eyq_A 601 PF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----------HKQVAVLVPTTLLAQQH 668 (1151)
T ss_dssp CS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----------TCEEEEECSSHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCeEEEEechHHHHHHH
Confidence 55 479999999999887 32 379999999999999999999887643 34899999999999999
Q ss_pred HHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCC
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~r 639 (2158)
++.|.+++...++++..++|........ ....+|+|+||+.+ .+ . ..++++++|||||+|++
T Consensus 669 ~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll---~~-~---~~~~~l~lvIiDEaH~~---- 737 (1151)
T 2eyq_A 669 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL---QS-D---VKFKDLGLLIVDEEHRF---- 737 (1151)
T ss_dssp HHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH---HS-C---CCCSSEEEEEEESGGGS----
T ss_pred HHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH---hC-C---ccccccceEEEechHhc----
Confidence 9999999988889999999876544321 23589999999854 22 1 34678999999999986
Q ss_pred hhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHh
Q 000114 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2158)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l 719 (2158)
|.....++.. ....+++++||||++. ..+...+... ..............++...+... ...
T Consensus 738 g~~~~~~l~~-------l~~~~~vl~lSATp~p-~~l~~~~~~~-~~~~~i~~~~~~r~~i~~~~~~~---~~~------ 799 (1151)
T 2eyq_A 738 GVRHKERIKA-------MRANVDILTLTATPIP-RTLNMAMSGM-RDLSIIATPPARRLAVKTFVREY---DSM------ 799 (1151)
T ss_dssp CHHHHHHHHH-------HHTTSEEEEEESSCCC-HHHHHHHTTT-SEEEECCCCCCBCBCEEEEEEEC---CHH------
T ss_pred ChHHHHHHHH-------hcCCCCEEEEcCCCCh-hhHHHHHhcC-CCceEEecCCCCccccEEEEecC---CHH------
Confidence 3333333322 2457899999999653 3333333221 11111111111112222222211 111
Q ss_pred hHHHHHHH-HHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeE
Q 000114 720 NDLCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (2158)
Q Consensus 720 ~~~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~ 798 (2158)
.+...+ .+...+++++|||++++.+..++..|..... ..+++
T Consensus 800 --~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p-----------------------------------~~~v~ 842 (1151)
T 2eyq_A 800 --VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIA 842 (1151)
T ss_dssp --HHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCT-----------------------------------TSCEE
T ss_pred --HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCeEE
Confidence 111122 2334578999999999999999998876421 24688
Q ss_pred EecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCC
Q 000114 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (2158)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (2158)
++||+|+..+|..+++.|++|+++|||||+++++|||+|++++||. +++.. +++.+|.||+||+||.| .
T Consensus 843 ~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi----~~~~~-----~~l~~l~Qr~GRvgR~g--~ 911 (1151)
T 2eyq_A 843 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH--H 911 (1151)
T ss_dssp ECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTTTS-----SCHHHHHHHHTTCCBTT--B
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE----eCCCC-----CCHHHHHHHHhccCcCC--C
Confidence 9999999999999999999999999999999999999999999886 55432 37789999999999987 6
Q ss_pred ccEEEEEcCCC
Q 000114 879 YGEGIIITGHS 889 (2158)
Q Consensus 879 ~G~~iil~~~~ 889 (2158)
.|.|++++...
T Consensus 912 ~g~~~ll~~~~ 922 (1151)
T 2eyq_A 912 QAYAWLLTPHP 922 (1151)
T ss_dssp CEEEEEEECCG
T ss_pred ceEEEEEECCc
Confidence 79999998764
No 74
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.1e-29 Score=329.45 Aligned_cols=326 Identities=20% Similarity=0.255 Sum_probs=225.7
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+|+|.++++.++.+ ++++++|||+|||+++.++++..+.. .++ ++|||+|+++|+.|+++++.+.++ ..+.
T Consensus 9 ~l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~--~~liv~P~~~L~~q~~~~~~~~~~-~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRLTK--YGG--KVLMLAPTKPLVLQHAESFRRLFN-LPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHHHHH--SCS--CEEEECSSHHHHHHHHHHHHHHBC-SCGG
T ss_pred CccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHHHhc--CCC--eEEEEECCHHHHHHHHHHHHHHhC-cchh
Confidence 6999999999999986 79999999999999999999887763 344 899999999999999999996553 2345
Q ss_pred EEEEEcCCcchhh--hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhc
Q 000114 1421 RVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~ 1498 (2158)
++..++|+..... .....++|+|+||+.+...+.. ....+.++++||+||||++.+.. .+..+...+.. .
T Consensus 82 ~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~--~~~~~~~~~~~----~ 153 (494)
T 1wp9_A 82 KIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGNY--AYVFIAREYKR----Q 153 (494)
T ss_dssp GEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTTC--HHHHHHHHHHH----H
T ss_pred heEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhc--CCcchhhceEEEEECCcccCCCC--cHHHHHHHHHh----c
Confidence 8899999876542 2345779999999999876654 23457889999999999987432 33334433332 2
Q ss_pred CCCceEEEeccCCCC-hHH---HHHHhccCCCceEe-cCCCC----cccccEEEEecccccc--h---------------
Q 000114 1499 ENKIRIVALSTSLAN-AKD---LGEWIGATSHGLFN-FPPGV----RPVPLEIHIQGVDITN--F--------------- 1552 (2158)
Q Consensus 1499 ~~~~riV~lSATl~n-~~d---l~~wl~~~~~~i~~-f~~~~----rpv~l~~~i~~~~~~~--~--------------- 1552 (2158)
....++++||||+.+ ..+ +..+++........ ..+.. .+..........+... .
T Consensus 154 ~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (494)
T 1wp9_A 154 AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPL 233 (494)
T ss_dssp CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999975 334 44444432111100 00000 1111111000000000 0
Q ss_pred ----------------------------------------------------------------HHHHH-----------
Q 000114 1553 ----------------------------------------------------------------EARMQ----------- 1557 (2158)
Q Consensus 1553 ----------------------------------------------------------------~~~~~----------- 1557 (2158)
...+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (494)
T 1wp9_A 234 AETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGST 313 (494)
T ss_dssp HHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccc
Confidence 00000
Q ss_pred -------------------------hcChHHHHH----HHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccc
Q 000114 1558 -------------------------AMTKPTFTA----IVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2158)
Q Consensus 1558 -------------------------~~~k~~~~~----i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~ 1606 (2158)
....+.... +.... .++.++||||++++.+..++..|..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~---------- 383 (494)
T 1wp9_A 314 KASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK---------- 383 (494)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH----------
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHH----------
Confidence 001111111 11221 3578999999999999988866632
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhcccEEEecC--------CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCcc
Q 000114 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE--------GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678 (2158)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~--------~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~ 1678 (2158)
.+..+..+|| +|+..+|..+++.|++|.++|||||+++++|+|+|++
T Consensus 384 -------------------------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~ 438 (494)
T 1wp9_A 384 -------------------------DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEV 438 (494)
T ss_dssp -------------------------TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTC
T ss_pred -------------------------cCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhC
Confidence 1456888999 9999999999999999999999999999999999999
Q ss_pred EEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
.+|| +++.+.++..|+||+|||||.| .|.+++++....
T Consensus 439 ~~Vi----------~~d~~~~~~~~~Qr~GR~~R~g---~g~~~~l~~~~t 476 (494)
T 1wp9_A 439 DLVV----------FYEPVPSAIRSIQRRGRTGRHM---PGRVIILMAKGT 476 (494)
T ss_dssp CEEE----------ESSCCHHHHHHHHHHTTSCSCC---CSEEEEEEETTS
T ss_pred CEEE----------EeCCCCCHHHHHHHHhhccCCC---CceEEEEEecCC
Confidence 9988 4555667999999999999987 389998887764
No 75
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=5.2e-31 Score=369.78 Aligned_cols=274 Identities=14% Similarity=0.138 Sum_probs=189.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
||. | |+|.++++.++.+ .|++++||||||||+ |.+|++..+.. .+. ++|||+||++||.|+++.+++ +...
T Consensus 55 g~~-p-~iQ~~ai~~il~g-~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~--~~lil~PtreLa~Q~~~~l~~-l~~~ 125 (1054)
T 1gku_B 55 GEP-R-AIQKMWAKRILRK-ESFAATAPTGVGKTS-FGLAMSLFLAL--KGK--RCYVIFPTSLLVIQAAETIRK-YAEK 125 (1054)
T ss_dssp CSC-C-HHHHHHHHHHHTT-CCEECCCCBTSCSHH-HHHHHHHHHHT--TSC--CEEEEESCHHHHHHHHHHHHH-HHTT
T ss_pred CCC-H-HHHHHHHHHHHhC-CCEEEEcCCCCCHHH-HHHHHHHHHhh--cCC--eEEEEeccHHHHHHHHHHHHH-HHhh
Confidence 688 9 9999999999975 569999999999998 88888877755 233 899999999999999999995 4444
Q ss_pred CCc----EEEEEcCCcchhh-----hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1418 LGM----RVVELTGETAMDL-----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1418 ~g~----~v~~ltG~~~~~~-----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
.++ +++.++|+.+... +.+..++|+|+||+++..++.+ ++++++|||||||++.+ +|+.++.++
T Consensus 126 ~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~-~~~~~~~i~ 198 (1054)
T 1gku_B 126 AGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK-ASKNVDKLL 198 (1054)
T ss_dssp TCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT-STHHHHHHH
T ss_pred cCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh-ccccHHHHH
Confidence 577 8999999877643 3344589999999998876554 66899999999999987 677888887
Q ss_pred HHHHHHH----hhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCC-CcccccEEEEecccccchHHHHHhcChHH
Q 000114 1489 SRMRYIA----SQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG-VRPVPLEIHIQGVDITNFEARMQAMTKPT 1563 (2158)
Q Consensus 1489 srl~~i~----~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~-~rpv~l~~~i~~~~~~~~~~~~~~~~k~~ 1563 (2158)
.++.+.. ...+...+++++|||+++..++..++...... +...+. .....+...+... .. . ..
T Consensus 199 ~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~-i~v~~~~~~~~~i~~~~~~~--~k--------~-~~ 266 (1054)
T 1gku_B 199 HLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN-FDIGSSRITVRNVEDVAVND--ES--------I-ST 266 (1054)
T ss_dssp HHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC-CCCSCCEECCCCEEEEEESC--CC--------T-TT
T ss_pred HHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE-EEccCcccCcCCceEEEech--hH--------H-HH
Confidence 7664311 12245678999999998754333222111100 001111 1111122222210 00 0 11
Q ss_pred HHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCC
Q 000114 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2158)
Q Consensus 1564 ~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l 1643 (2158)
...+... .++++||||+|++.|+.++..|.. . ..++.+||+|
T Consensus 267 L~~ll~~--~~~~~LVF~~t~~~a~~l~~~L~~----------------------------------~--~~v~~lhg~~ 308 (1054)
T 1gku_B 267 LSSILEK--LGTGGIIYARTGEEAEEIYESLKN----------------------------------K--FRIGIVTATK 308 (1054)
T ss_dssp THHHHTT--SCSCEEEEESSHHHHHHHHHTTTT----------------------------------S--SCEEECTTSS
T ss_pred HHHHHhh--cCCCEEEEEcCHHHHHHHHHHHhh----------------------------------c--cCeeEEeccH
Confidence 1122222 267899999999999988855421 1 4589999998
Q ss_pred CHHHHHHHHHHHHcCCceEEEe----cCccccccCCCcc-EEEE
Q 000114 1644 NKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTAH-LVVV 1682 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdlp~~-~vVI 1682 (2158)
..+++.|++|+++|||| |+++++|||+|++ .+||
T Consensus 309 -----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI 347 (1054)
T 1gku_B 309 -----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV 347 (1054)
T ss_dssp -----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEE
T ss_pred -----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEE
Confidence 37889999999999999 9999999999994 6666
No 76
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=1.1e-29 Score=333.00 Aligned_cols=351 Identities=16% Similarity=0.178 Sum_probs=236.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|| .|+++|..+++.++.|+ |+.|+||+|||++|.+|++..... +..+++|+||++||.|.++.+
T Consensus 80 lG~-~pt~VQ~~~ip~ll~G~---Iaea~TGeGKTlaf~LP~~l~aL~-----------g~~vlVltptreLA~qd~e~~ 144 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALHDGN---IAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASRDAEQM 144 (844)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS---EEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCcHHHHHhhHHHhCCC---EEEccCCcHHHHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHH
Confidence 389 99999999999998875 999999999999999999854322 236999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh-hccccEEEcchhHH--HHHHhccC---CCccccccceEEeecccccc-cC-Chh-
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RGP- 641 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l~-d~-rg~- 641 (2158)
..++..+|++|+.++|+.+...+. ...++|+|+||+++ |.+..+.. ....++.+.++||||||.++ |. +.|
T Consensus 145 ~~l~~~lgl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 145 GKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHHHTTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 999999999999999998654332 34789999999997 66655431 23456889999999999876 53 322
Q ss_pred ----------hHHHHHHHHHHHHhhcc---------ccccEE-----------------EEccccCC-hHHHHHHHhcc-
Q 000114 642 ----------VLESIVARTVRQIETTK---------EHIRLV-----------------GLSATLPN-YEDVALFLRVN- 683 (2158)
Q Consensus 642 ----------~le~iv~r~~~~~~~~~---------~~~riv-----------------~lSATlpn-~~dv~~~l~~~- 683 (2158)
.+...+..+. ...+ ...+++ ++|||.+. ...+...+.+.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv---~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~ 301 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFV---RTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHV 301 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHH---TTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHH
T ss_pred hhcCCcccchhHHHHHHHHH---HhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHH
Confidence 1222222222 2222 234444 66777542 11221111100
Q ss_pred ----------------------------------------------c---------------------------------
Q 000114 684 ----------------------------------------------L--------------------------------- 684 (2158)
Q Consensus 684 ----------------------------------------------~--------------------------------- 684 (2158)
.
T Consensus 302 l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~ 381 (844)
T 1tf5_A 302 AMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 381 (844)
T ss_dssp TCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhH
Confidence 0
Q ss_pred -------cCceEEecCCccccccee--EEEeeccCChhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHH
Q 000114 685 -------EKGLFYFDNSYRPVPLSQ--QYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIR 754 (2158)
Q Consensus 685 -------~~~~~~f~~~~rpv~l~~--~~~~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~ 754 (2158)
.-.+ ...+..+|+.-.. .++.. ....++..+.. .+.+. ..+.++||||+|+..++.++..|.
T Consensus 382 ~e~~~iY~l~v-v~IPtn~p~~r~d~~d~v~~---~~~~K~~al~~----~i~~~~~~~~pvLVft~s~~~se~Ls~~L~ 453 (844)
T 1tf5_A 382 EEFRNIYNMQV-VTIPTNRPVVRDDRPDLIYR---TMEGKFKAVAE----DVAQRYMTGQPVLVGTVAVETSELISKLLK 453 (844)
T ss_dssp HHHHHHHCCCE-EECCCSSCCCCEECCCEEES---SHHHHHHHHHH----HHHHHHHHTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhCCce-EEecCCCCcccccCCcEEEe---CHHHHHHHHHH----HHHHHHhcCCcEEEEECCHHHHHHHHHHHH
Confidence 0000 1112222221110 01111 12233333332 22222 236789999999999999999998
Q ss_pred HHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhcc
Q 000114 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834 (2158)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GV 834 (2158)
..++.. ..+||++...+|..+.+.|+.| .|+|||++++||+
T Consensus 454 ~~gi~~-------------------------------------~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~ 494 (844)
T 1tf5_A 454 NKGIPH-------------------------------------QVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGT 494 (844)
T ss_dssp TTTCCC-------------------------------------EEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTC
T ss_pred HCCCCE-------------------------------------EEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCc
Confidence 766443 4559999999988777777666 6999999999999
Q ss_pred CCC--------ceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH-------HHHHHh--
Q 000114 835 NLP--------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL-------RYYLSL-- 897 (2158)
Q Consensus 835 dlP--------~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~-------~~y~~l-- 897 (2158)
|+| ++.+||+ |+.+. |...|.||+||+||.| ..|.++.+++..+. .....+
T Consensus 495 DI~l~~~V~~~ggl~VIn----~d~p~------s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD~l~r~f~~~~~~~~~~ 562 (844)
T 1tf5_A 495 DIKLGEGVKELGGLAVVG----TERHE------SRRIDNQLRGRSGRQG--DPGITQFYLSMEDELMRRFGAERTMAMLD 562 (844)
T ss_dssp CCCCCTTSGGGTSEEEEE----SSCCS------SHHHHHHHHTTSSGGG--CCEEEEEEEETTSSGGGSSHHHHHHHHHH
T ss_pred CccccchhhhcCCcEEEE----ecCCC------CHHHHHhhcCccccCC--CCCeEEEEecHHHHHHHHHhHHHHHHHHH
Confidence 999 8899999 66665 7789999999999987 77999988776441 112222
Q ss_pred ---hcCCCcccchhhHhhHHHHHH
Q 000114 898 ---MNQQLPIESQFVSKLADQLNA 918 (2158)
Q Consensus 898 ---l~~~~pieS~l~~~l~d~lna 918 (2158)
+....||++.......+....
T Consensus 563 ~~~~~~~~~i~~~~~~~~i~~aq~ 586 (844)
T 1tf5_A 563 RFGMDDSTPIQSKMVSRAVESSQK 586 (844)
T ss_dssp HHTCCSSSCBCCHHHHHHHHHHHH
T ss_pred hcCCCCccccchHHHHHHHHHHHH
Confidence 234567888777765554433
No 77
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=8.9e-30 Score=354.85 Aligned_cols=348 Identities=19% Similarity=0.253 Sum_probs=195.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|+..|+|+|.++++.++.+ .|+++++|||||||++|.+|++..+.......+.++|||+|+++|+.|+++.|++.+..
T Consensus 245 ~~~~~r~~Q~~ai~~il~g-~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~- 322 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER- 322 (936)
T ss_dssp ---CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-
T ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-
Confidence 4778999999999999875 56999999999999999999998877632211338999999999999999999966553
Q ss_pred CCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccc-cccceeEEEecccccccCCCCChHHHHHHHHHH
Q 000114 1418 LGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (2158)
.++++..++|+..... .....++|+|+||+++...+++ ... .+.++++|||||||++.... .+..++.++..
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~--~~~~~l~~~~liViDEaH~~~~~~--~~~~i~~~~~~ 398 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYLE 398 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEEETGGGCSTTC--HHHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHc--CccccccCCCEEEEECccccCCCc--cHHHHHHHHHH
Confidence 4889999999875442 2345679999999999887764 222 57889999999999987543 35555544432
Q ss_pred H-HhhcCCCceEEEeccCCCC--hH----------HHHHHhccCCCceEecCCC--------CcccccEEEEec------
Q 000114 1494 I-ASQVENKIRIVALSTSLAN--AK----------DLGEWIGATSHGLFNFPPG--------VRPVPLEIHIQG------ 1546 (2158)
Q Consensus 1494 i-~~~~~~~~riV~lSATl~n--~~----------dl~~wl~~~~~~i~~f~~~--------~rpv~l~~~i~~------ 1546 (2158)
. ........++++||||+.. .. .+...++... +...... .+|......+..
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~--i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~ 476 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQA--ISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHSCCCCEEEEECCCCSCCHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCce--eecccccHHHHHHhccCCcceEEecccccCcHH
Confidence 2 1112456899999999943 21 1222333210 0000000 011110110000
Q ss_pred -------------------------------ccccchHHHH---------------------------------------
Q 000114 1547 -------------------------------VDITNFEARM--------------------------------------- 1556 (2158)
Q Consensus 1547 -------------------------------~~~~~~~~~~--------------------------------------- 1556 (2158)
+....+....
T Consensus 477 ~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al 556 (936)
T 4a2w_A 477 AAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000
Q ss_pred ---------------Hh------------------------------------cChHHHHHHHHhH------hcCCCEEE
Q 000114 1557 ---------------QA------------------------------------MTKPTFTAIVQHA------KNEKPALV 1579 (2158)
Q Consensus 1557 ---------------~~------------------------------------~~k~~~~~i~~~~------~~~~~~IV 1579 (2158)
.. ...+....+...+ .++.++||
T Consensus 557 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLI 636 (936)
T 4a2w_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (936)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEE
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEE
Confidence 00 0011111111111 34688999
Q ss_pred EecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-C
Q 000114 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2158)
Q Consensus 1580 Fv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g 1658 (2158)
||++++.+..++..|.......+.... ...+.+...+||+|+..+|..+++.|++ |
T Consensus 637 F~~t~~~ae~L~~~L~~~~~l~~ik~~-----------------------~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 637 FAKTRALVSALKKCMEENPILNYIKPG-----------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp EESSHHHHHHHHHHHHHCSTTSSCCCE-----------------------EC----------------------------
T ss_pred EeCCHHHHHHHHHHHhhCcccccccee-----------------------EEecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 999999999999888653111110000 0124556778999999999999999999 9
Q ss_pred CceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChH
Q 000114 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2158)
Q Consensus 1659 ~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~ 1730 (2158)
.++|||||+++++|||+|++.+|| +++.|.++..|+||+|| ||. ..|.+++++.....
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI----------~yD~p~s~~~~iQr~GR-GR~---~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVV----------LYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSEEEEECC------CCCCSEEE----------EESCCSCSHHHHCC-----------CCCEEEEESCHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEE----------EeCCCCCHHHHHHhcCC-CCC---CCCEEEEEEeCCCH
Confidence 999999999999999999999999 55667799999999999 995 67889998877543
No 78
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=4.5e-31 Score=340.59 Aligned_cols=299 Identities=16% Similarity=0.170 Sum_probs=202.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
|+.+++|+|+ +++.++.++++++++||||||||++|++|++..+... +.++||++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR----------RLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc----------CCcEEEECCCHHHHHHHHHHhc
Confidence 6788999985 7999999988889999999999999999999876542 3479999999999999999874
Q ss_pred hhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART 650 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~ 650 (2158)
|..+....+... ........|.++|++.+ ..+.+. ..+.++++|||||||++.......++.+..+
T Consensus 70 ------g~~v~~~~~~~~--~~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~~~~~~~~~~~~~~~- 136 (451)
T 2jlq_A 70 ------GLPIRYQTPAVK--SDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFTDPCSVAARGYISTR- 136 (451)
T ss_dssp ------TSCEEECCTTCS--CCCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-
T ss_pred ------Cceeeeeecccc--ccCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccCCcchHHHHHHHHHh-
Confidence 333432222211 12234567999999986 333322 4577899999999998721222222222111
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHH
Q 000114 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV 730 (2158)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 730 (2158)
...+++++++||||+|+ .+..++... ....... +++|... + ..+.. .+.+
T Consensus 137 -----~~~~~~~~i~~SAT~~~--~~~~~~~~~--~~~~~~~---~~~p~~~-~------------~~~~~----~l~~- 186 (451)
T 2jlq_A 137 -----VEMGEAAAIFMTATPPG--STDPFPQSN--SPIEDIE---REIPERS-W------------NTGFD----WITD- 186 (451)
T ss_dssp -----HHTTSCEEEEECSSCTT--CCCSSCCCS--SCEEEEE---CCCCSSC-C------------SSSCH----HHHH-
T ss_pred -----hcCCCceEEEEccCCCc--cchhhhcCC--CceEecC---ccCCchh-h------------HHHHH----HHHh-
Confidence 13457999999999874 111111111 1111111 1111100 0 00111 1111
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH
Q 000114 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2158)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~ 810 (2158)
..+++||||+|++.|+.++..|...+ ..+..+|+.+ |.
T Consensus 187 -~~~~~lVF~~s~~~a~~l~~~L~~~g-------------------------------------~~~~~lh~~~----~~ 224 (451)
T 2jlq_A 187 -YQGKTVWFVPSIKAGNDIANCLRKSG-------------------------------------KRVIQLSRKT----FD 224 (451)
T ss_dssp -CCSCEEEECSSHHHHHHHHHHHHTTT-------------------------------------CCEEEECTTT----HH
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHcC-------------------------------------CeEEECCHHH----HH
Confidence 26799999999999999999887543 2345568865 46
Q ss_pred HHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccC------CCCCc----cccCCHHHHHHhhcccCCCCCCCcc
Q 000114 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN------PEKGA----WTELSPLDIMQMLGRAGRPQYDSYG 880 (2158)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd------~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2158)
.+++.|++|+++|||||+++++|||+|+ ++||+++..+. ....- -.+.|..+|+||+|||||.|.+ .|
T Consensus 225 ~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~-~g 302 (451)
T 2jlq_A 225 TEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ-ED 302 (451)
T ss_dssp HHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC-CC
T ss_pred HHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC-Cc
Confidence 7999999999999999999999999999 99998552211 11000 0456999999999999998842 58
Q ss_pred EEEEEcCC
Q 000114 881 EGIIITGH 888 (2158)
Q Consensus 881 ~~iil~~~ 888 (2158)
.+++++..
T Consensus 303 ~~~~~~~~ 310 (451)
T 2jlq_A 303 DQYVFSGD 310 (451)
T ss_dssp EEEEECSC
T ss_pred cEEEEeCC
Confidence 88888754
No 79
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=2e-29 Score=352.97 Aligned_cols=272 Identities=14% Similarity=0.143 Sum_probs=189.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|| .|+|+|.++++.++.+ .+++++||||||||++|+++++..+.. +. ++|||+||++||.|+++++++ |+ .
T Consensus 76 gf-~pt~iQ~~ai~~il~g-~dvlv~ApTGSGKTl~~l~~il~~~~~---~~--~~Lil~PtreLa~Q~~~~l~~-l~-~ 146 (1104)
T 4ddu_A 76 GK-DLTGYQRLWAKRIVQG-KSFTMVAPTGVGKTTFGMMTALWLARK---GK--KSALVFPTVTLVKQTLERLQK-LA-D 146 (1104)
T ss_dssp SS-CCCHHHHHHHHHHTTT-CCEEECCSTTCCHHHHHHHHHHHHHTT---TC--CEEEEESSHHHHHHHHHHHHT-TS-C
T ss_pred CC-CCCHHHHHHHHHHHcC-CCEEEEeCCCCcHHHHHHHHHHHHHhc---CC--eEEEEechHHHHHHHHHHHHH-hh-C
Confidence 46 6999999999999985 469999999999999998888877633 34 899999999999999999995 76 5
Q ss_pred CCcEEEEEcCCcchh-----hhccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHH-
Q 000114 1418 LGMRVVELTGETAMD-----LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS- 1489 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~-----~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~is- 1489 (2158)
.+++++.++|+.+.. .+.+. .++|+|+||+++..++.. ..++++++|||||||++.... ..+...+.
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~~~-r~~Dr~L~~ 221 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKAS-RNIDTLLMM 221 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTTSS-HHHHHHHHT
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCcccccc-ccchhhhHh
Confidence 688999999998752 22232 369999999999766553 346789999999999876521 11111111
Q ss_pred -----H-HHHHHhhcC-----------CCceEEEeccCC-CCh---HHHHHHhccCCCceEecCCCCcccccEEEEeccc
Q 000114 1490 -----R-MRYIASQVE-----------NKIRIVALSTSL-ANA---KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548 (2158)
Q Consensus 1490 -----r-l~~i~~~~~-----------~~~riV~lSATl-~n~---~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~ 1548 (2158)
. +..+...++ .+.|++++|||+ +.. ..+..+++..... ....+..+...+...
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~-----~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRISS- 295 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCB-----CCCCCCCEEEEEESC-
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEecc-----CCCCcCCceeEEEec-
Confidence 1 223333333 678999999994 432 2234444422111 111111222222211
Q ss_pred ccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHH
Q 000114 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEML 1628 (2158)
Q Consensus 1549 ~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L 1628 (2158)
... .....+... .++++||||++++.|+.++..|..
T Consensus 296 --~k~--------~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~-------------------------------- 331 (1104)
T 4ddu_A 296 --RSK--------EKLVELLEI--FRDGILIFAQTEEEGKELYEYLKR-------------------------------- 331 (1104)
T ss_dssp --CCH--------HHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHH--------------------------------
T ss_pred --CHH--------HHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHh--------------------------------
Confidence 111 111122222 358999999999999999876632
Q ss_pred HHHhcccEE-EecCCCCHHHHHHHHHHHHcCCceEEEe----cCccccccCCCc-cEEEE
Q 000114 1629 KATLRHGVG-YLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTA-HLVVV 1682 (2158)
Q Consensus 1629 ~~~l~~gv~-~~H~~l~~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdlp~-~~vVI 1682 (2158)
.+..+. .+|| +|+. ++.|++|+++|||| |+++++|||+|+ +.+||
T Consensus 332 ---~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI 382 (1104)
T 4ddu_A 332 ---FKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 382 (1104)
T ss_dssp ---TTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEE
T ss_pred ---CCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEE
Confidence 245577 8898 3555 99999999999999 999999999999 88888
No 80
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=6.2e-29 Score=350.43 Aligned_cols=308 Identities=17% Similarity=0.243 Sum_probs=224.8
Q ss_pred CCCCCHHHHHHHHHHhc----CC-CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYN----TD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~----~~-~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
| .++|+|.++++.++. +. .+++++||||||||++|+++++..+.. +. +++|++||++|+.|+++.+++.
T Consensus 602 ~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~--~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 602 F-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HK--QVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp S-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TC--EEEEECSSHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CC--eEEEEechHHHHHHHHHHHHHH
Confidence 5 469999999999886 32 379999999999999999998876544 34 9999999999999999999987
Q ss_pred hcCCCCcEEEEEcCCcchhh-----hccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHH
Q 000114 1414 FGQGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~ 1486 (2158)
|.. .++++..++|..+... +.+. ..+|+|+||+.+. ....++++++|||||+|+++. ..
T Consensus 676 ~~~-~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-------~~~~~~~l~lvIiDEaH~~g~----~~-- 741 (1151)
T 2eyq_A 676 FAN-WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-------SDVKFKDLGLLIVDEEHRFGV----RH-- 741 (1151)
T ss_dssp STT-TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-------SCCCCSSEEEEEEESGGGSCH----HH--
T ss_pred hhc-CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-------CCccccccceEEEechHhcCh----HH--
Confidence 765 3788999988655432 1122 4699999997542 234578999999999999742 11
Q ss_pred HHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhc-cCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHH
Q 000114 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG-ATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2158)
Q Consensus 1487 ~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~-~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~ 1565 (2158)
...++. +..+.++++||||+... .+...+. .....++...+ ....++...+..... .....
T Consensus 742 -~~~l~~----l~~~~~vl~lSATp~p~-~l~~~~~~~~~~~~i~~~~-~~r~~i~~~~~~~~~-----------~~i~~ 803 (1151)
T 2eyq_A 742 -KERIKA----MRANVDILTLTATPIPR-TLNMAMSGMRDLSIIATPP-ARRLAVKTFVREYDS-----------MVVRE 803 (1151)
T ss_dssp -HHHHHH----HHTTSEEEEEESSCCCH-HHHHHHTTTSEEEECCCCC-CBCBCEEEEEEECCH-----------HHHHH
T ss_pred -HHHHHH----hcCCCCEEEEcCCCChh-hHHHHHhcCCCceEEecCC-CCccccEEEEecCCH-----------HHHHH
Confidence 122222 24578999999997543 2322222 22111222222 222344443332221 12234
Q ss_pred HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCH
Q 000114 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2158)
Q Consensus 1566 ~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~ 1645 (2158)
.+...+..+++++|||++++.+..++..|... ..+.++..+||+|+.
T Consensus 804 ~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~---------------------------------~p~~~v~~lhg~~~~ 850 (1151)
T 2eyq_A 804 AILREILRGGQVYYLYNDVENIQKAAERLAEL---------------------------------VPEARIAIGHGQMRE 850 (1151)
T ss_dssp HHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH---------------------------------CTTSCEEECCSSCCH
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh---------------------------------CCCCeEEEEeCCCCH
Confidence 44555577899999999999999988766321 114569999999999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
.+|..+++.|++|+++|||||+++++|+|+|++++||. +...++++.+|.||+||+||.| ..|.|++++
T Consensus 851 ~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi---------~~~~~~~l~~l~Qr~GRvgR~g--~~g~~~ll~ 919 (1151)
T 2eyq_A 851 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII---------ERADHFGLAQLHQLRGRVGRSH--HQAYAWLLT 919 (1151)
T ss_dssp HHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE---------TTTTSSCHHHHHHHHTTCCBTT--BCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE---------eCCCCCCHHHHHHHHhccCcCC--CceEEEEEE
Confidence 99999999999999999999999999999999887772 1222468899999999999986 689999998
Q ss_pred cCC
Q 000114 1726 HAP 1728 (2158)
Q Consensus 1726 ~~~ 1728 (2158)
...
T Consensus 920 ~~~ 922 (1151)
T 2eyq_A 920 PHP 922 (1151)
T ss_dssp CCG
T ss_pred CCc
Confidence 764
No 81
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=4.3e-30 Score=340.80 Aligned_cols=298 Identities=22% Similarity=0.282 Sum_probs=209.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
+++++++||||||||..++ +.+.... +.+|++|+|+||.|+++++.+. |+++..++|+...
T Consensus 155 rk~vlv~apTGSGKT~~al----~~l~~~~-----------~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~ 215 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAI----QKYFSAK-----------SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERV 215 (677)
T ss_dssp CEEEEEECCTTSSHHHHHH----HHHHHSS-----------SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEE
T ss_pred CCEEEEEcCCCCCHHHHHH----HHHHhcC-----------CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeE
Confidence 3569999999999998443 3333321 3599999999999999999875 7889999998764
Q ss_pred CHhh-hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 591 TRQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 591 ~~~~-~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
-... ....+++++|++.++ ..+.+++|||||||++.+ ++|..++.++.++ ....++++++||
T Consensus 216 iv~TpGr~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l------~~~~i~il~~SA 279 (677)
T 3rc3_A 216 TVQPNGKQASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGL------CAEEVHLCGEPA 279 (677)
T ss_dssp CCSTTCCCCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHC------CEEEEEEEECGG
T ss_pred EecCCCcccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHcc------CccceEEEeccc
Confidence 2111 123678999988542 345689999999999987 6998888776654 236889999999
Q ss_pred ccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHH
Q 000114 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAK 748 (2158)
Q Consensus 669 Tlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~ 748 (2158)
|.+....+..+.+.. +.+....|+.++.... . .... +. .. .+..+|||+|+++++.
T Consensus 280 T~~~i~~l~~~~~~~-----~~v~~~~r~~~l~~~~-----~-~l~~---l~---------~~-~~g~iIf~~s~~~ie~ 335 (677)
T 3rc3_A 280 AIDLVMELMYTTGEE-----VEVRDYKRLTPISVLD-----H-ALES---LD---------NL-RPGDCIVCFSKNDIYS 335 (677)
T ss_dssp GHHHHHHHHHHHTCC-----EEEEECCCSSCEEECS-----S-CCCS---GG---------GC-CTTEEEECSSHHHHHH
T ss_pred hHHHHHHHHHhcCCc-----eEEEEeeecchHHHHH-----H-HHHH---HH---------hc-CCCCEEEEcCHHHHHH
Confidence 976555555444322 1222234444443210 0 0000 00 11 3345899999999999
Q ss_pred HHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhC--CCceEEEe
Q 000114 749 TARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD--GHVQVLVS 826 (2158)
Q Consensus 749 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~--g~i~VLVa 826 (2158)
++..|...+ .++++|||+|++.+|..+++.|++ |.++||||
T Consensus 336 la~~L~~~g-------------------------------------~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVA 378 (677)
T 3rc3_A 336 VSRQIEIRG-------------------------------------LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVA 378 (677)
T ss_dssp HHHHHHHTT-------------------------------------CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEE
T ss_pred HHHHHHhcC-------------------------------------CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEe
Confidence 999887632 468899999999999999999999 99999999
Q ss_pred chhhhhccCCCceEEEEecccc---cCCCCC-ccccCCHHHHHHhhcccCCCCCC-CccEEEEEcCCCcHHHHHHhh-cC
Q 000114 827 TATLAWGVNLPAHTVIIKGTQI---YNPEKG-AWTELSPLDIMQMLGRAGRPQYD-SYGEGIIITGHSELRYYLSLM-NQ 900 (2158)
Q Consensus 827 T~tla~GVdlP~v~vVI~~~~~---yd~~~g-~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil~~~~~~~~y~~ll-~~ 900 (2158)
|+++++|||+ .+++||+++.. ||+..+ +..++|..+|+||+|||||.|.+ ..|.|++++.. +...+.+++ ..
T Consensus 379 Tdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~ 456 (677)
T 3rc3_A 379 TDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRP 456 (677)
T ss_dssp CGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSC
T ss_pred CcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcC
Confidence 9999999999 67777774432 333211 34588999999999999999865 35777776655 444555554 44
Q ss_pred CCcccc
Q 000114 901 QLPIES 906 (2158)
Q Consensus 901 ~~pieS 906 (2158)
..+|++
T Consensus 457 ~~~i~~ 462 (677)
T 3rc3_A 457 VDPIRA 462 (677)
T ss_dssp CCCCCC
T ss_pred cchhhh
Confidence 556766
No 82
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=1.3e-29 Score=334.03 Aligned_cols=307 Identities=15% Similarity=0.201 Sum_probs=212.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
..+|+++|.++++.++.+ .++++++|||+|||++|++++...+... +.++|||+|+++|+.|++++|.+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp EECCCHHHHHHHHHHHHH-SEEEEECCSTTTHHHHHHHHHHHHHHHC----------SSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHHhCC----------CCeEEEEECcHHHHHHHHHHHHH
Confidence 348999999999999886 5699999999999999999998887643 23899999999999999999988
Q ss_pred hcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHH
Q 000114 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~ 652 (2158)
+....++++..++|+.....+.....+|+|+||+.+ .+.. ...+.++++|||||+|++.. ..++.+
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l---~~~~--~~~~~~~~liIiDE~H~~~~---~~~~~i------ 245 (510)
T 2oca_A 180 YRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTV---VKQP--KEWFSQFGMMMNDECHLATG---KSISSI------ 245 (510)
T ss_dssp TTSSCGGGEEECGGGCCTTGGGCTTCSEEEEEHHHH---TTSC--GGGGGGEEEEEEETGGGCCH---HHHHHH------
T ss_pred hhcCCccceEEEecCCccccccccCCcEEEEeHHHH---hhch--hhhhhcCCEEEEECCcCCCc---ccHHHH------
Confidence 755556788999998776665556789999999953 3321 24677899999999999864 223322
Q ss_pred HHhhccccccEEEEccccCChH-H---HHHHHhccccCceEEecCC-----cccccceeEEEeeccC----------Chh
Q 000114 653 QIETTKEHIRLVGLSATLPNYE-D---VALFLRVNLEKGLFYFDNS-----YRPVPLSQQYIGIQVK----------KPL 713 (2158)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~-d---v~~~l~~~~~~~~~~f~~~-----~rpv~l~~~~~~~~~~----------~~~ 713 (2158)
+.......++++||||+++.. + +..+++.. .+.+... -...+.....+.+... ...
T Consensus 246 -l~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (510)
T 2oca_A 246 -ISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEI----FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQ 320 (510)
T ss_dssp -GGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSE----ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHH
T ss_pred -HHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCe----EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchH
Confidence 233456779999999986431 1 22222211 1011110 0011111111111111 001
Q ss_pred HHHHH------hhHHHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccC
Q 000114 714 QRFQL------MNDLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785 (2158)
Q Consensus 714 ~~~~~------l~~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 785 (2158)
..+.. -...+.+.+.... +++++||||+ ++.+..++..|.+.+
T Consensus 321 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~---------------------------- 371 (510)
T 2oca_A 321 EEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEY---------------------------- 371 (510)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTC----------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcC----------------------------
Confidence 10100 1112233333332 2445666666 888888887776532
Q ss_pred cchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEec-hhhhhccCCCceEEEEecccccCCCCCccccCCHHHH
Q 000114 786 SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST-ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 786 ~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT-~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
..+..+||+|+..+|..+++.|++|.++||||| +++++|+|+|++++||. ++++. |+.+|
T Consensus 372 ---------~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~----~~~~~------s~~~~ 432 (510)
T 2oca_A 372 ---------DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL----AHGVK------SKIIV 432 (510)
T ss_dssp ---------SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE----SSCCC------SCCHH
T ss_pred ---------CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE----eCCCC------CHHHH
Confidence 136788999999999999999999999999999 99999999999999998 44443 55689
Q ss_pred HHhhcccCCCCCC
Q 000114 865 MQMLGRAGRPQYD 877 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d 877 (2158)
+||+|||||.|.+
T Consensus 433 ~Q~~GR~gR~g~~ 445 (510)
T 2oca_A 433 LQTIGRVLRKHGS 445 (510)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHhcccccCCC
Confidence 9999999998843
No 83
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=1.7e-30 Score=344.62 Aligned_cols=300 Identities=15% Similarity=0.191 Sum_probs=213.0
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
.+++++++||||||||+.+ +..+.. .+ +++|++|+|+||.|++++|++ . |+++..++|+...-...
T Consensus 154 ~rk~vlv~apTGSGKT~~a----l~~l~~---~~--~gl~l~PtR~LA~Qi~~~l~~-~----g~~v~lltG~~~~iv~T 219 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHA----IQKYFS---AK--SGVYCGPLKLLAHEIFEKSNA-A----GVPCDLVTGEERVTVQP 219 (677)
T ss_dssp CCEEEEEECCTTSSHHHHH----HHHHHH---SS--SEEEEESSHHHHHHHHHHHHH-T----TCCEEEECSSCEECCST
T ss_pred CCCEEEEEcCCCCCHHHHH----HHHHHh---cC--CeEEEeCHHHHHHHHHHHHHh-c----CCcEEEEECCeeEEecC
Confidence 3567999999999999844 333333 22 459999999999999999984 2 67899999986642111
Q ss_pred -ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1436 -LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1436 -l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
-...+++++|++.+. ..+.++++||||||++++. +|..++.++.++. ....+++++|||.+.
T Consensus 220 pGr~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~------~~~i~il~~SAT~~~ 283 (677)
T 3rc3_A 220 NGKQASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC------AEEVHLCGEPAAIDL 283 (677)
T ss_dssp TCCCCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC------EEEEEEEECGGGHHH
T ss_pred CCcccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHccC------ccceEEEeccchHHH
Confidence 113589999987643 3577899999999999764 5666665554432 257899999999765
Q ss_pred hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHH
Q 000114 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVD 1593 (2158)
Q Consensus 1514 ~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~ 1593 (2158)
...+..+.+.. +.+....|+.++........ . + . ......+|||+|++.|+.++..
T Consensus 284 i~~l~~~~~~~----~~v~~~~r~~~l~~~~~~l~--~---------------l-~--~~~~g~iIf~~s~~~ie~la~~ 339 (677)
T 3rc3_A 284 VMELMYTTGEE----VEVRDYKRLTPISVLDHALE--S---------------L-D--NLRPGDCIVCFSKNDIYSVSRQ 339 (677)
T ss_dssp HHHHHHHHTCC----EEEEECCCSSCEEECSSCCC--S---------------G-G--GCCTTEEEECSSHHHHHHHHHH
T ss_pred HHHHHHhcCCc----eEEEEeeecchHHHHHHHHH--H---------------H-H--hcCCCCEEEEcCHHHHHHHHHH
Confidence 66666655433 11222234544443211110 0 0 0 1134569999999999988866
Q ss_pred HHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc--CCceEEEecCcccc
Q 000114 1594 LMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA--GKIKVCVMSSSMCW 1671 (2158)
Q Consensus 1594 L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~--g~i~VLVaT~~la~ 1671 (2158)
|.. .+.+|+++||+|++++|..+++.|++ |.++|||||+++++
T Consensus 340 L~~-----------------------------------~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~ 384 (677)
T 3rc3_A 340 IEI-----------------------------------RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGM 384 (677)
T ss_dssp HHH-----------------------------------TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGS
T ss_pred HHh-----------------------------------cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHC
Confidence 632 24679999999999999999999999 99999999999999
Q ss_pred ccCCCccEEEEecceeec--CCC-CcCcCCCHHHHHHhhccCCCCCCC-CceEEEEEecCChHHHHHHHh-hCCCcccc
Q 000114 1672 GVPLTAHLVVVMGTQYYD--GQE-NAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHAPRKEYYKKFL-YDAFPVES 1745 (2158)
Q Consensus 1672 Gvdlp~~~vVI~gt~~yd--~~~-~~~~~~s~~~~lQr~GRaGR~g~d-~~G~~iil~~~~~~~~~~k~l-~~~~piES 1745 (2158)
|||++...||+.|...|+ +.. ....|++..+|+||+|||||.|.+ ..|.|++++.... ..+++++ ..+.++++
T Consensus 385 GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~-~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 385 GLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDL-SLLKEILKRPVDPIRA 462 (677)
T ss_dssp SCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHH-HHHHHHHHSCCCCCCC
T ss_pred CcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchH-HHHHHHHhcCcchhhh
Confidence 999987888888877642 211 135689999999999999999865 3588888876644 3455555 46777777
No 84
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=1e-28 Score=323.93 Aligned_cols=355 Identities=16% Similarity=0.140 Sum_probs=236.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|| .|+|+|.++++.++.|+ |+.|+||+|||++|.+|++..... +. .+++|+||++||.|.++.+. .+...
T Consensus 81 G~-~pt~VQ~~~ip~ll~G~---Iaea~TGeGKTlaf~LP~~l~aL~---g~--~vlVltptreLA~qd~e~~~-~l~~~ 150 (844)
T 1tf5_A 81 GM-FPFKVQLMGGVALHDGN---IAEMKTGEGKTLTSTLPVYLNALT---GK--GVHVVTVNEYLASRDAEQMG-KIFEF 150 (844)
T ss_dssp SC-CCCHHHHHHHHHHHTTS---EEECCTTSCHHHHHHHHHHHHHTT---SS--CEEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CC-CCcHHHHHhhHHHhCCC---EEEccCCcHHHHHHHHHHHHHHHc---CC--CEEEEeCCHHHHHHHHHHHH-HHHhh
Confidence 69 99999999999998865 999999999999999999844322 33 79999999999999998887 56666
Q ss_pred CCcEEEEEcCCcchhhhc-ccCCcEEEeCHHHH-HHHHhhh----hccccccceeEEEeccccccc-CCC-CCh------
Q 000114 1418 LGMRVVELTGETAMDLKL-LEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIG-GQG-GPV------ 1483 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~-l~~~~IIV~TPe~l-~~l~r~~----~~~~~l~~v~llIiDEaH~l~-~~~-g~~------ 1483 (2158)
+|++|+.+.|+.+...+. ...++|+|+||+++ .++++.. .....++.+.++|+||||.++ +.. .|.
T Consensus 151 lgl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred cCCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 799999999998765433 33579999999999 5555542 123457889999999999876 431 110
Q ss_pred --HHHHHHHHHHHHhhcC---------CCceEE-----------------EeccCCCC-hHHHHH-----Hh-ccCCCce
Q 000114 1484 --LEVIVSRMRYIASQVE---------NKIRIV-----------------ALSTSLAN-AKDLGE-----WI-GATSHGL 1528 (2158)
Q Consensus 1484 --~e~~isrl~~i~~~~~---------~~~riV-----------------~lSATl~n-~~dl~~-----wl-~~~~~~i 1528 (2158)
-..+...+..+..+++ +..++. ++|||.+. ...+.. .+ ......+
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 0124455566666664 345555 77888642 122211 11 1111111
Q ss_pred Ee---------c--------------------------------------------------------------------
Q 000114 1529 FN---------F-------------------------------------------------------------------- 1531 (2158)
Q Consensus 1529 ~~---------f-------------------------------------------------------------------- 1531 (2158)
+. |
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 00 0
Q ss_pred ----CCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCccccc
Q 000114 1532 ----PPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSA 1607 (2158)
Q Consensus 1532 ----~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~ 1607 (2158)
.|..+|+.-. .....-......+. ......+......+.|+||||+|++.|+.++..|..
T Consensus 391 ~vv~IPtn~p~~r~-d~~d~v~~~~~~K~----~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~----------- 454 (844)
T 1tf5_A 391 QVVTIPTNRPVVRD-DRPDLIYRTMEGKF----KAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKN----------- 454 (844)
T ss_dssp CEEECCCSSCCCCE-ECCCEEESSHHHHH----HHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHT-----------
T ss_pred ceEEecCCCCcccc-cCCcEEEeCHHHHH----HHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH-----------
Confidence 0000110000 00000000000111 011222222224678999999999999999976632
Q ss_pred ccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCC--------ccE
Q 000114 1608 FLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT--------AHL 1679 (2158)
Q Consensus 1608 ~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp--------~~~ 1679 (2158)
.+..+..+||+++..+|..+.+.|+.| .|+|||++++||+|++ +..
T Consensus 455 ------------------------~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl 508 (844)
T 1tf5_A 455 ------------------------KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGL 508 (844)
T ss_dssp ------------------------TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSE
T ss_pred ------------------------CCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCc
Confidence 244578899999999988777766665 6999999999999999 788
Q ss_pred EEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChH-------HHHHHHh-----hCCCccccch
Q 000114 1680 VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK-------EYYKKFL-----YDAFPVESHL 1747 (2158)
Q Consensus 1680 vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~-------~~~~k~l-----~~~~piES~L 1747 (2158)
+|| |++.|.+...|.||+||+||.| ..|.++.+++..+. +...+.+ .+..++++.+
T Consensus 509 ~VI----------n~d~p~s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~ 576 (844)
T 1tf5_A 509 AVV----------GTERHESRRIDNQLRGRSGRQG--DPGITQFYLSMEDELMRRFGAERTMAMLDRFGMDDSTPIQSKM 576 (844)
T ss_dssp EEE----------ESSCCSSHHHHHHHHTTSSGGG--CCEEEEEEEETTSSGGGSSHHHHHHHHHHHHTCCSSSCBCCHH
T ss_pred EEE----------EecCCCCHHHHHhhcCccccCC--CCCeEEEEecHHHHHHHHHhHHHHHHHHHhcCCCCccccchHH
Confidence 999 7788899999999999999998 78998888765431 2233332 3467888877
Q ss_pred hhHHHHHHH
Q 000114 1748 HHFLHDNFN 1756 (2158)
Q Consensus 1748 ~~~l~d~l~ 1756 (2158)
.....+...
T Consensus 577 ~~~~i~~aq 585 (844)
T 1tf5_A 577 VSRAVESSQ 585 (844)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655444433
No 85
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=9.6e-29 Score=325.79 Aligned_cols=306 Identities=17% Similarity=0.171 Sum_probs=213.2
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
..|+|+|.++++.++.+ .++++++|||||||++|++++...+.. ..+ +++||+|+++|+.|++++++ +++...+
T Consensus 112 ~~l~~~Q~~ai~~~~~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~--~vlvl~P~~~L~~Q~~~~~~-~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLEN--YEG--KILIIVPTTALTTQMADDFV-DYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHHH-SEEEEECCSTTTHHHHHHHHHHHHHHH--CSS--EEEEEESSHHHHHHHHHHHH-HTTSSCG
T ss_pred CCCCHHHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHHhC--CCC--eEEEEECcHHHHHHHHHHHH-HhhcCCc
Confidence 48999999999999875 569999999999999999998887765 234 99999999999999999997 6655556
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcC
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
.++..++|+.....+....++|+|+||+.+. +. ....++++++|||||+|++.. ..+..+...+.
T Consensus 186 ~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~---~~--~~~~~~~~~liIiDE~H~~~~----------~~~~~il~~~~ 250 (510)
T 2oca_A 186 AMIKKIGGGASKDDKYKNDAPVVVGTWQTVV---KQ--PKEWFSQFGMMMNDECHLATG----------KSISSIISGLN 250 (510)
T ss_dssp GGEEECGGGCCTTGGGCTTCSEEEEEHHHHT---TS--CGGGGGGEEEEEEETGGGCCH----------HHHHHHGGGCT
T ss_pred cceEEEecCCccccccccCCcEEEEeHHHHh---hc--hhhhhhcCCEEEEECCcCCCc----------ccHHHHHHhcc
Confidence 7889999987766555567799999999643 22 234578899999999999863 22334445556
Q ss_pred CCceEEEeccCCCChH----HHHHHhccCCCceEecCCCC-----cccccEEEEecccc----------cchHHHHHh--
Q 000114 1500 NKIRIVALSTSLANAK----DLGEWIGATSHGLFNFPPGV-----RPVPLEIHIQGVDI----------TNFEARMQA-- 1558 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~----dl~~wl~~~~~~i~~f~~~~-----rpv~l~~~i~~~~~----------~~~~~~~~~-- 1558 (2158)
...++++||||+++.. .+..+++.. ++.+.+.. ...+..+....... ..+...+..
T Consensus 251 ~~~~~l~lSATp~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (510)
T 2oca_A 251 NCMFKFGLSGSLRDGKANIMQYVGMFGEI---FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIIT 327 (510)
T ss_dssp TCCEEEEEESCGGGCSSCHHHHHHHHCSE---ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHH
T ss_pred cCcEEEEEEeCCCCCcccHHHhHHhhCCe---EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHh
Confidence 6789999999996531 223333321 22222210 01111111111111 122221110
Q ss_pred cC----hHHHHHHHHhHhcCC-CEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000114 1559 MT----KPTFTAIVQHAKNEK-PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2158)
Q Consensus 1559 ~~----k~~~~~i~~~~~~~~-~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2158)
.. ......+......++ ++||||+ .+.|..++..|.. .+
T Consensus 328 ~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~-----------------------------------~~ 371 (510)
T 2oca_A 328 GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKN-----------------------------------EY 371 (510)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHT-----------------------------------TC
T ss_pred ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHH-----------------------------------cC
Confidence 01 111222223223334 4566666 8888777655522 11
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEec-CccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS-SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT-~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
..+..+||+|+..+|..+++.|++|+++||||| +++++|+|+|++.+|| +...+.+..+|+||+|||||
T Consensus 372 ~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi----------~~~~~~s~~~~~Q~~GR~gR 441 (510)
T 2oca_A 372 DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVV----------LAHGVKSKIIVLQTIGRVLR 441 (510)
T ss_dssp SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEE----------ESSCCCSCCHHHHHHHHHHT
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEE----------EeCCCCCHHHHHHHHhcccc
Confidence 258999999999999999999999999999999 9999999999999998 34556688999999999999
Q ss_pred CCC
Q 000114 1713 PLL 1715 (2158)
Q Consensus 1713 ~g~ 1715 (2158)
.|.
T Consensus 442 ~g~ 444 (510)
T 2oca_A 442 KHG 444 (510)
T ss_dssp TTC
T ss_pred cCC
Confidence 883
No 86
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.96 E-value=1.5e-29 Score=326.49 Aligned_cols=300 Identities=14% Similarity=0.084 Sum_probs=201.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|+.+++|+|. +++.+++++++++++||||||||++|++|++..+.. .+. +++|++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~--~~lvl~Ptr~La~Q~~~~l~------ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--RRL--RTLILAPTRVVAAEMEEALR------ 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--cCC--cEEEECCCHHHHHHHHHHhc------
Confidence 5778999985 899999988888999999999999999999987765 233 89999999999999998764
Q ss_pred CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhh
Q 000114 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~ 1497 (2158)
|..+....+.... .......|.++|++.+...+.. ...++++++||+||||++. .........+... .
T Consensus 70 -g~~v~~~~~~~~~--~~~~~~~i~~~t~~~l~~~l~~---~~~l~~~~~iViDEah~~~----~~~~~~~~~~~~~--~ 137 (451)
T 2jlq_A 70 -GLPIRYQTPAVKS--DHTGREIVDLMCHATFTTRLLS---STRVPNYNLIVMDEAHFTD----PCSVAARGYISTR--V 137 (451)
T ss_dssp -TSCEEECCTTCSC--CCCSSCCEEEEEHHHHHHHHHH---CSCCCCCSEEEEETTTCCS----HHHHHHHHHHHHH--H
T ss_pred -Cceeeeeeccccc--cCCCCceEEEEChHHHHHHhhC---cccccCCCEEEEeCCccCC----cchHHHHHHHHHh--h
Confidence 3444332222111 1223447999999987655443 3567899999999999872 1122222222111 1
Q ss_pred cCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCE
Q 000114 1498 VENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~ 1577 (2158)
...+.++++||||+++. +..++.... .+.. .....+...+. . .+..+. ...+++
T Consensus 138 ~~~~~~~i~~SAT~~~~--~~~~~~~~~-~~~~------------~~~~~p~~~~~----~----~~~~l~---~~~~~~ 191 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGS--TDPFPQSNS-PIED------------IEREIPERSWN----T----GFDWIT---DYQGKT 191 (451)
T ss_dssp HTTSCEEEEECSSCTTC--CCSSCCCSS-CEEE------------EECCCCSSCCS----S----SCHHHH---HCCSCE
T ss_pred cCCCceEEEEccCCCcc--chhhhcCCC-ceEe------------cCccCCchhhH----H----HHHHHH---hCCCCE
Confidence 24579999999999652 111111110 0000 00111111110 0 011111 246799
Q ss_pred EEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc
Q 000114 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA 1657 (2158)
Q Consensus 1578 IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~ 1657 (2158)
||||+|++.|+.++..|.. .+..+..+|+.+ +..+++.|++
T Consensus 192 lVF~~s~~~a~~l~~~L~~-----------------------------------~g~~~~~lh~~~----~~~~~~~f~~ 232 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRK-----------------------------------SGKRVIQLSRKT----FDTEYPKTKL 232 (451)
T ss_dssp EEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECTTT----HHHHGGGGGS
T ss_pred EEEcCCHHHHHHHHHHHHH-----------------------------------cCCeEEECCHHH----HHHHHHhhcc
Confidence 9999999999999876632 134577888865 4678999999
Q ss_pred CCceEEEecCccccccCCCccEEEE-ecc---eeec--CCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecC
Q 000114 1658 GKIKVCVMSSSMCWGVPLTAHLVVV-MGT---QYYD--GQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727 (2158)
Q Consensus 1658 g~i~VLVaT~~la~Gvdlp~~~vVI-~gt---~~yd--~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~ 1727 (2158)
|+++|||||+++++|+|+|+ .+|| .|. ..|+ +.... ..|.+..+|+||+|||||.| ...|.|++++..
T Consensus 233 g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g-~~~g~~~~~~~~ 310 (451)
T 2jlq_A 233 TDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP-AQEDDQYVFSGD 310 (451)
T ss_dssp SCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEECSC
T ss_pred CCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCC-CCCccEEEEeCC
Confidence 99999999999999999999 6666 221 1121 11111 17889999999999999988 337888888754
No 87
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.96 E-value=3.4e-28 Score=317.60 Aligned_cols=353 Identities=16% Similarity=0.130 Sum_probs=224.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
|+ .|+++|..+++.++.|+ ++.++||+|||++|.+|++..... +..+++++||++||.|.++.+.
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~---Iaem~TGsGKTlaf~LP~l~~~l~-----------g~~vlVltPTreLA~Q~~e~~~ 136 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC---IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAENNR 136 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE---EEECCTTSCHHHHHHHHHHHHHTT-----------SSCCEEEESSHHHHHHHHHHHH
T ss_pred CC-CCChHHHhhcccccCCe---eeeecCCchHHHHHHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 44 89999999999988874 999999999999999999865432 2369999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHhh-hccccEEEcchhHH--HHHHhccC---CCccccccceEEeecccccc-cC-Ch---
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RG--- 640 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l~-d~-rg--- 640 (2158)
.++..+|++|+.++|+.+...+. ..+++|+|+||+++ |.+..+.. ....++.++++|+||||.++ |. +.
T Consensus 137 ~l~~~lgl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 137 PLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHHHhcCCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 99999999999999998754332 34789999999995 66665431 22456889999999999887 42 21
Q ss_pred ------------hhHHHHHHHHHHHH-------------hhccccccEE------------------------EEccccC
Q 000114 641 ------------PVLESIVARTVRQI-------------ETTKEHIRLV------------------------GLSATLP 671 (2158)
Q Consensus 641 ------------~~le~iv~r~~~~~-------------~~~~~~~riv------------------------~lSATlp 671 (2158)
..+..++..+.... ..-....+++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 23444544442100 0000122221 6788865
Q ss_pred C-hHHHHHHHhc-------------------------------------------------cccC---------------
Q 000114 672 N-YEDVALFLRV-------------------------------------------------NLEK--------------- 686 (2158)
Q Consensus 672 n-~~dv~~~l~~-------------------------------------------------~~~~--------------- 686 (2158)
. ...+...+.+ ....
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 2 1111110000 0000
Q ss_pred ----------------------ceEEecCCcccccceeE--EEeeccCChhHHHHHhhHHHHHHHHHH-hCCCeEEEEec
Q 000114 687 ----------------------GLFYFDNSYRPVPLSQQ--YIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVH 741 (2158)
Q Consensus 687 ----------------------~~~~f~~~~rpv~l~~~--~~~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~ 741 (2158)
--+..-+..+|+.-... ++. .....++..+. ..+.+. ..+.|+||||+
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~---~~~~~K~~al~----~~i~~~~~~gqpvLVft~ 449 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVY---MTEAEKIQAII----EDIKERTAKGQPVLVGTI 449 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEE---SSHHHHHHHHH----HHHHHHHTTTCCEEEEES
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEE---eCHHHHHHHHH----HHHHHHhcCCCCEEEEEC
Confidence 00011122223221110 111 11223333322 223333 34679999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCc
Q 000114 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821 (2158)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i 821 (2158)
|+..++.++..|...++.. .++||.+...+|..+.+.|+.|
T Consensus 450 sie~se~Ls~~L~~~gi~~-------------------------------------~vLnak~~~rEa~iia~agr~G-- 490 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKH-------------------------------------NVLNAKFHANEAAIVAQAGYPA-- 490 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCC-------------------------------------EECCTTCHHHHHHHHHTTTSTT--
T ss_pred cHHHHHHHHHHHHHCCCCE-------------------------------------EEecCChhHHHHHHHHhcCCCC--
Confidence 9999999999999877544 3459999999999999999988
Q ss_pred eEEEechhhhhccCCCc--------------------------------e-----EEEEecccccCCCCCccccCCHHHH
Q 000114 822 QVLVSTATLAWGVNLPA--------------------------------H-----TVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 822 ~VLVaT~tla~GVdlP~--------------------------------v-----~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
.|+|||++++||+|++. | .+||+ |+.+. |...|
T Consensus 491 ~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~----te~pe------s~riy 560 (853)
T 2fsf_A 491 AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG----TERHE------SRRID 560 (853)
T ss_dssp CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE----SSCCS------SHHHH
T ss_pred eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE----ccCCC------CHHHH
Confidence 69999999999999997 3 68999 66554 77899
Q ss_pred HHhhcccCCCCCCCccEEEEEcCCCcH-------HHHHHhh-----cCCCcccchhhHhhHHHHH
Q 000114 865 MQMLGRAGRPQYDSYGEGIIITGHSEL-------RYYLSLM-----NQQLPIESQFVSKLADQLN 917 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~-------~~y~~ll-----~~~~pieS~l~~~l~d~ln 917 (2158)
.||+||+||.| ..|.++.+++..+. ..+..++ ....||++....+..+...
T Consensus 561 ~qr~GRTGRqG--d~G~s~~fls~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aq 623 (853)
T 2fsf_A 561 NQLRGRSGRQG--DAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQ 623 (853)
T ss_dssp HHHHTTSSGGG--CCEEEEEEEETTSGGGGTTCCHHHHTTGGGGCCCTTCCCCCHHHHHHHHHHH
T ss_pred HhhccccccCC--CCeeEEEEecccHHHHHHhhHHHHHHHHHhhCCCCccccchHHHHHHHHHHH
Confidence 99999999987 77999888776541 2222222 2346788888776655443
No 88
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=4.5e-29 Score=325.71 Aligned_cols=302 Identities=20% Similarity=0.199 Sum_probs=205.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..|+|+|.++++.++.++ ++++++|||+|||++|++++... +.++||++|+++|+.|++++|.+
T Consensus 92 ~~l~~~Q~~ai~~i~~~~-~~ll~~~TGsGKT~~~l~~i~~~--------------~~~~Lvl~P~~~L~~Q~~~~~~~- 155 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGI- 155 (472)
T ss_dssp CCBCHHHHHHHHHHTTTT-EEEEECCTTSCHHHHHHHHHHHH--------------CSCEEEEESSHHHHHHHHHHGGG-
T ss_pred CCcCHHHHHHHHHHHhcC-CEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEECCHHHHHHHHHHHHh-
Confidence 379999999999988764 59999999999999999988764 12699999999999999999988
Q ss_pred cccCCcE-EEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHH
Q 000114 574 LQMYDVK-VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2158)
Q Consensus 574 ~~~~gi~-v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~ 652 (2158)
+ |++ ++.++|+... ..+|+|+||+.+...... ...++++|||||+|.+.+.. +..++.
T Consensus 156 ~---~~~~v~~~~g~~~~------~~~Ivv~T~~~l~~~~~~-----~~~~~~liIvDEaH~~~~~~---~~~~~~---- 214 (472)
T 2fwr_A 156 F---GEEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAES---YVQIAQ---- 214 (472)
T ss_dssp G---CGGGEEEBSSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEETGGGTTSTT---THHHHH----
T ss_pred C---CCcceEEECCCcCC------cCCEEEEEcHHHHHHHHH-----hcCCCCEEEEECCcCCCChH---HHHHHH----
Confidence 3 678 8999987653 478999999986333221 22458999999999987632 222211
Q ss_pred HHhhccccccEEEEccccCChH----HHHHHHhccccC-ceEEecCCcccccceeEEEeeccCCh---------------
Q 000114 653 QIETTKEHIRLVGLSATLPNYE----DVALFLRVNLEK-GLFYFDNSYRPVPLSQQYIGIQVKKP--------------- 712 (2158)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~----dv~~~l~~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~--------------- 712 (2158)
.....++++||||+++.+ .+..+++..... ....+...+-+ +.....+.+.....
T Consensus 215 ----~~~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (472)
T 2fwr_A 215 ----MSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLA-KYTIKRIFVPLAEDERVEYEKREKVYKQF 289 (472)
T ss_dssp ----TCCCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCC-SEEECCEEECCCHHHHHHTTTTTHHHHSC
T ss_pred ----hcCCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCC-CeEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 224678899999987422 233333211000 00000000000 00000000000000
Q ss_pred ------------------------------h---HHHH-------HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHH
Q 000114 713 ------------------------------L---QRFQ-------LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARA 752 (2158)
Q Consensus 713 ------------------------------~---~~~~-------~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~ 752 (2158)
. .... .-...+.+ ++....++++||||++++.+..++..
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-~l~~~~~~k~lvF~~~~~~~~~l~~~ 368 (472)
T 2fwr_A 290 LRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLRE-ILERHRKDKIIIFTRHNELVYRISKV 368 (472)
T ss_dssp SSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHH-HHHHTSSSCBCCBCSCHHHHHHHHHH
T ss_pred HHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHH-HHHhCCCCcEEEEECCHHHHHHHHHH
Confidence 0 0000 00011222 22334578999999999998888775
Q ss_pred HHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhh
Q 000114 753 IRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832 (2158)
Q Consensus 753 L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~ 832 (2158)
|. +..+||+++..+|..+++.|++|.++|||||+++++
T Consensus 369 l~------------------------------------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~ 406 (472)
T 2fwr_A 369 FL------------------------------------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDE 406 (472)
T ss_dssp TT------------------------------------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCS
T ss_pred hC------------------------------------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhc
Confidence 41 334699999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC-CccEEEEEcCCCc
Q 000114 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIIITGHSE 890 (2158)
Q Consensus 833 GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil~~~~~ 890 (2158)
|+|+|++++||+ |+++. |+..|+||+|||||.|.+ ....+|.+++.+.
T Consensus 407 Gldlp~~~~Vi~----~~~~~------s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 407 GIDVPDANVGVI----MSGSG------SAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSCSCCBSEEEE----ECCSS------CCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CcccccCcEEEE----ECCCC------CHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 999999999999 55553 677899999999999854 4455655666543
No 89
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.96 E-value=2.3e-29 Score=325.20 Aligned_cols=289 Identities=16% Similarity=0.164 Sum_probs=183.4
Q ss_pred HHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEE
Q 000114 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584 (2158)
Q Consensus 505 ~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l 584 (2158)
+.++.++++++++||||||||++|++|+++.+... +.++||++||++||.|+++.+. |..+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~ 78 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------RLRTAVLAPTRVVAAEMAEALR------GLPVRYQ 78 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEECSHHHHHHHHHHTT------TSCEEEC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------CCcEEEECchHHHHHHHHHHhc------CceEeEE
Confidence 55677888999999999999999999999887642 3479999999999999999886 3334333
Q ss_pred eCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEE
Q 000114 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLV 664 (2158)
Q Consensus 585 ~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv 664 (2158)
.+... ........+.++|.+.+. +.......++++++|||||||.+.......+..+..+ ......|+|
T Consensus 79 ~~~~~--~~~t~~~~i~~~~~~~l~---~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~------~~~~~~~~i 147 (459)
T 2z83_A 79 TSAVQ--REHQGNEIVDVMCHATLT---HRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATK------VELGEAAAI 147 (459)
T ss_dssp C----------CCCSEEEEEHHHHH---HHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHH------HHTTSCEEE
T ss_pred ecccc--cCCCCCcEEEEEchHHHH---HHhhccccccCCcEEEEECCccCCchhhHHHHHHHHH------hccCCccEE
Confidence 22211 111234457778887642 2221224578899999999997521111112111111 123679999
Q ss_pred EEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChH
Q 000114 665 GLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRK 744 (2158)
Q Consensus 665 ~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~ 744 (2158)
+||||++.. +..+.. ...|+ ......+........+ . .+.+ .++++||||+|++
T Consensus 148 l~SAT~~~~--~~~~~~------------~~~pi--~~~~~~~~~~~~~~~~----~----~l~~--~~~~~LVF~~s~~ 201 (459)
T 2z83_A 148 FMTATPPGT--TDPFPD------------SNAPI--HDLQDEIPDRAWSSGY----E----WITE--YAGKTVWFVASVK 201 (459)
T ss_dssp EECSSCTTC--CCSSCC------------CSSCE--EEEECCCCSSCCSSCC----H----HHHH--CCSCEEEECSCHH
T ss_pred EEEcCCCcc--hhhhcc------------CCCCe--EEecccCCcchhHHHH----H----HHHh--cCCCEEEEeCChH
Confidence 999999742 111111 11111 1100011111111111 1 1111 2679999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEE
Q 000114 745 ETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824 (2158)
Q Consensus 745 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VL 824 (2158)
.++.++..|...+. .+..+||. +|..+++.|++|.++||
T Consensus 202 ~~~~l~~~L~~~g~-------------------------------------~v~~lh~~----~R~~~~~~f~~g~~~iL 240 (459)
T 2z83_A 202 MGNEIAMCLQRAGK-------------------------------------KVIQLNRK----SYDTEYPKCKNGDWDFV 240 (459)
T ss_dssp HHHHHHHHHHHTTC-------------------------------------CEEEESTT----CCCCCGGGSSSCCCSEE
T ss_pred HHHHHHHHHHhcCC-------------------------------------cEEecCHH----HHHHHHhhccCCCceEE
Confidence 99999999876532 24556774 78889999999999999
Q ss_pred EechhhhhccCCCceEEEEecccc------cCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 825 VSTATLAWGVNLPAHTVIIKGTQI------YNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 825 VaT~tla~GVdlP~v~vVI~~~~~------yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
|||+++++|||+|+ ++||+.... |+.... .-.+.|..+|+||+|||||.|. ..|.+++++...
T Consensus 241 VaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~-~~G~~~~~~~~~ 313 (459)
T 2z83_A 241 ITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN-QVGDEYHYGGAT 313 (459)
T ss_dssp EESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT-CCCEEEEECSCC
T ss_pred EECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCC-CCCeEEEEEccc
Confidence 99999999999999 888873311 111000 0034589999999999999873 269999998775
No 90
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=4.1e-29 Score=320.81 Aligned_cols=271 Identities=17% Similarity=0.153 Sum_probs=173.6
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCC
Q 000114 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd 587 (2158)
+..++|++++||||||||++|++|+++.+... +.+++|++||++||.|+++.+... .+...++.
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----------~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~ 68 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQA 68 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSC
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----------CCeEEEEcchHHHHHHHHHHHhcC------CeEEeccc
Confidence 45567899999999999999999999977653 348999999999999999988642 23332222
Q ss_pred CccCHhhhccccEEEcchhHH-H-----HHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccc
Q 000114 588 QTLTRQQIEETQIIVTTPEKW-D-----IITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHI 661 (2158)
Q Consensus 588 ~~~~~~~~~~~~IiV~TPekl-d-----~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~ 661 (2158)
.. .|+||+++ + .+.+.......++++++|||||+|++...+...+..+ .... ...+.
T Consensus 69 ~~-----------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~----~~~~--~~~~~ 131 (440)
T 1yks_A 69 FS-----------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWA----AHRA--RANES 131 (440)
T ss_dssp CC-----------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHH----HHHH--HTTSC
T ss_pred ce-----------eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHH----HHHh--ccCCc
Confidence 11 36677653 1 2222233334578899999999999821222222211 1111 13579
Q ss_pred cEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEec
Q 000114 662 RLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (2158)
Q Consensus 662 riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~ 741 (2158)
++++||||+++. +..+.. ...+ +......+........ +..+.+ .++++||||+
T Consensus 132 ~~l~~SAT~~~~--~~~~~~------------~~~~--~~~~~~~~~~~~~~~~--------~~~l~~--~~~~~lVF~~ 185 (440)
T 1yks_A 132 ATILMTATPPGT--SDEFPH------------SNGE--IEDVQTDIPSEPWNTG--------HDWILA--DKRPTAWFLP 185 (440)
T ss_dssp EEEEECSSCTTC--CCSSCC------------CSSC--EEEEECCCCSSCCSSS--------CHHHHH--CCSCEEEECS
T ss_pred eEEEEeCCCCch--hhhhhh------------cCCC--eeEeeeccChHHHHHH--------HHHHHh--cCCCEEEEeC
Confidence 999999998742 111111 0111 1111111111111111 111222 2679999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCc
Q 000114 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821 (2158)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i 821 (2158)
+++.+..++..|...+ ..++.+|| .+|..+++.|++|++
T Consensus 186 s~~~a~~l~~~L~~~~-------------------------------------~~v~~lhg----~~R~~~~~~F~~g~~ 224 (440)
T 1yks_A 186 SIRAANVMAASLRKAG-------------------------------------KSVVVLNR----KTFEREYPTIKQKKP 224 (440)
T ss_dssp CHHHHHHHHHHHHHTT-------------------------------------CCEEECCS----SSCC--------CCC
T ss_pred CHHHHHHHHHHHHHcC-------------------------------------CCEEEecc----hhHHHHHhhhcCCCc
Confidence 9999999999887642 23677898 468899999999999
Q ss_pred eEEEechhhhhccCCCceEEEEecccc---------------cCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEc
Q 000114 822 QVLVSTATLAWGVNLPAHTVIIKGTQI---------------YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886 (2158)
Q Consensus 822 ~VLVaT~tla~GVdlP~v~vVI~~~~~---------------yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~ 886 (2158)
+|||||+++++|||+| +++||+.... |+. +.+..+|+||+|||||.| +..|.|++++
T Consensus 225 ~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~------p~~~~~~~Qr~GR~GR~g-~~~g~~~~l~ 296 (440)
T 1yks_A 225 DFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL------RISASSAAQRRGRIGRNP-NRDGDSYYYS 296 (440)
T ss_dssp SEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE------ECCHHHHHHHHTTSSCCT-TCCCEEEEEC
T ss_pred eEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc------ccCHHHHHHhccccCCCC-CCCceEEEEe
Confidence 9999999999999999 9988863221 333 358999999999999963 2579999996
No 91
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.96 E-value=2.1e-29 Score=334.07 Aligned_cols=298 Identities=15% Similarity=0.131 Sum_probs=202.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
...++|+|+.+++.+ ..+++++++||||||||++|++|+++.+... +.++||++||++||.|+++.+..
T Consensus 169 ~~~~lpiq~~~i~~l-~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~----------~~~vLvl~PtreLa~Qi~~~l~~ 237 (618)
T 2whx_A 169 ERIGEPDYEVDEDIF-RKKRLTIMDLHPGAGKTKRILPSIVREALKR----------RLRTLILAPTRVVAAEMEEALRG 237 (618)
T ss_dssp CCCCCCCCCCCGGGG-STTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTT
T ss_pred cccCCCccccCHHHH-hcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEcChHHHHHHHHHHhcC
Confidence 567889988876654 4556799999999999999999999987652 34899999999999999988752
Q ss_pred hcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHH
Q 000114 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~ 652 (2158)
..+. +.+.. ..........+.++|.+.+....... ..+.++++|||||||++...+...+..+..++
T Consensus 238 ------~~v~-~~~~~-l~~~~tp~~~i~~~t~~~l~~~l~~~---~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l-- 304 (618)
T 2whx_A 238 ------LPIR-YQTPA-VKSDHTGREIVDLMCHATFTTRLLSS---TRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-- 304 (618)
T ss_dssp ------SCEE-ECCTT-SSCCCCSSSCEEEEEHHHHHHHHHHC---SSCCCCSEEEEESTTCCSHHHHHHHHHHHHHH--
T ss_pred ------Ccee-Eeccc-ceeccCCCceEEEEChHHHHHHHhcc---ccccCCeEEEEECCCCCCccHHHHHHHHHHHh--
Confidence 3344 22221 11111234567778888653222221 34788999999999998324555555554433
Q ss_pred HHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhC
Q 000114 653 QIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG 732 (2158)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 732 (2158)
...+.|+++||||+++. +..+...+ ...+..... +.... ...+. ..+.+ .
T Consensus 305 ----~~~~~q~il~SAT~~~~--~~~~~~~~--~~~~~v~~~------------~~~~~----~~~ll----~~l~~--~ 354 (618)
T 2whx_A 305 ----EMGEAAAIFMTATPPGS--TDPFPQSN--SPIEDIERE------------IPERS----WNTGF----DWITD--Y 354 (618)
T ss_dssp ----HHTSCEEEEECSSCTTC--CCSSCCCS--SCEEEEECC------------CCSSC----CSSSC----HHHHH--C
T ss_pred ----cccCccEEEEECCCchh--hhhhhccC--Cceeeeccc------------CCHHH----HHHHH----HHHHh--C
Confidence 12578999999999753 22222211 111111110 01110 01111 11222 2
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
.+++||||+|++.|+.++..|...+. .+..+||. +|..+
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~-------------------------------------~v~~lhg~----~R~~~ 393 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGK-------------------------------------RVIQLSRK----TFDTE 393 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTT----THHHH
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCC-------------------------------------cEEEEChH----HHHHH
Confidence 67999999999999999999986532 25667874 78889
Q ss_pred HHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCC-----CC-----ccccCCHHHHHHhhcccCCCCCCCccEE
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE-----KG-----AWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~-----~g-----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2158)
++.|++|+++|||||+++++|||+| +++||+....++|. .+ .-.+.|..+|+||+|||||.|. ..|.+
T Consensus 394 l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~-~~G~a 471 (618)
T 2whx_A 394 YPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QEDDQ 471 (618)
T ss_dssp TTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEE
T ss_pred HHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC-CCCeE
Confidence 9999999999999999999999998 88887765544421 00 0124699999999999999863 37899
Q ss_pred EEEcC
Q 000114 883 IIITG 887 (2158)
Q Consensus 883 iil~~ 887 (2158)
+++++
T Consensus 472 i~l~~ 476 (618)
T 2whx_A 472 YVFSG 476 (618)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99987
No 92
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=1.4e-27 Score=311.49 Aligned_cols=356 Identities=17% Similarity=0.145 Sum_probs=239.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|+ .|+++|..+++.++.|+ |+.|+||+|||++|.+|++.....+ ..+++|+||+.||.|.++.+
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~---Iaem~TGeGKTLa~~LP~~l~aL~g-----------~~v~VvTpTreLA~Qdae~m 172 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN---VAEMKTGEGKTLTCVLPAYLNALAG-----------NGVHIVTVNDYLAKRDSEWM 172 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE---EEECCTTSCHHHHTHHHHHHHHTTT-----------SCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC---EEEecCCCccHHHHHHHHHHHHHhC-----------CCeEEEeCCHHHHHHHHHHH
Confidence 377 89999999999988774 9999999999999999997544322 26999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh-hccccEEEcchhHH--HHHHhccC---CCccccccceEEeecccccc-cC-Chh-
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RGP- 641 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l~-d~-rg~- 641 (2158)
..++..+|++|+.++|+.+...+. ...++|+|+||+++ |.+..+.. ....++.+.++||||||.++ |. |.|
T Consensus 173 ~~l~~~lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 173 GRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 999999999999999988654332 34789999999996 77765531 23456789999999999887 42 322
Q ss_pred ----------hHHHHHHHHHHHHhh------ccccccEE-----------------EEccccCC-hHHHHHHHhcc----
Q 000114 642 ----------VLESIVARTVRQIET------TKEHIRLV-----------------GLSATLPN-YEDVALFLRVN---- 683 (2158)
Q Consensus 642 ----------~le~iv~r~~~~~~~------~~~~~riv-----------------~lSATlpn-~~dv~~~l~~~---- 683 (2158)
.+...+.++...+.. -....+++ ++|||.+. ...+...+...
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 122223333322210 01455666 78999764 23333222110
Q ss_pred -cc------CceEEecC---Ccc-----------------cccce---eEEE---------------ee-----------
Q 000114 684 -LE------KGLFYFDN---SYR-----------------PVPLS---QQYI---------------GI----------- 707 (2158)
Q Consensus 684 -~~------~~~~~f~~---~~r-----------------pv~l~---~~~~---------------~~----------- 707 (2158)
.. ..+...+. .+- .+.+. +..- |.
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 00 00111110 000 00000 0000 00
Q ss_pred -----------cc--------------CChhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhccc
Q 000114 708 -----------QV--------------KKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALEND 761 (2158)
Q Consensus 708 -----------~~--------------~~~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (2158)
+. .....++.. +...+.+. ..+.|+||||+|+..++.++..|...++..
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~a----l~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~- 487 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIA----VVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPH- 487 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHH----HHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC-
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHH----HHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCE-
Confidence 00 011122222 22233332 346789999999999999999999876543
Q ss_pred ccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCce--
Q 000114 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH-- 839 (2158)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v-- 839 (2158)
.++||++...+|..+.+.|+.| .|+|||++++||+|++..
T Consensus 488 ------------------------------------~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~ 529 (922)
T 1nkt_A 488 ------------------------------------NVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGN 529 (922)
T ss_dssp ------------------------------------EEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCC
T ss_pred ------------------------------------EEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCC
Confidence 3459999888888888888888 699999999999999974
Q ss_pred --------------------------------------------------EEEEecccccCCCCCccccCCHHHHHHhhc
Q 000114 840 --------------------------------------------------TVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2158)
Q Consensus 840 --------------------------------------------------~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2158)
.+||+ |+.+. |...|.||+|
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~----te~pe------s~riy~qr~G 599 (922)
T 1nkt_A 530 VDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG----TERHE------SRRIDNQLRG 599 (922)
T ss_dssp HHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE----CSCCS------SHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe----ccCCC------CHHHHHHHhc
Confidence 68999 66554 7789999999
Q ss_pred ccCCCCCCCccEEEEEcCCCcHH-------HHHHh-----hcCCCcccchhhHhhHHHH
Q 000114 870 RAGRPQYDSYGEGIIITGHSELR-------YYLSL-----MNQQLPIESQFVSKLADQL 916 (2158)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~-------~y~~l-----l~~~~pieS~l~~~l~d~l 916 (2158)
|+||.| ..|.++.+++..+.- ....+ +....||++...++..+..
T Consensus 600 RTGRqG--dpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~ie~a 656 (922)
T 1nkt_A 600 RSGRQG--DPGESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTRAIKSA 656 (922)
T ss_dssp TSSGGG--CCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTCCTTSCCCCHHHHHHHHHH
T ss_pred ccccCC--CCeeEEEEechhHHHHHHhhhHHHHHHHHHhCCCCCcccccHHHHHHHHHH
Confidence 999987 779999888765531 12222 2345689988877655543
No 93
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.95 E-value=1.5e-29 Score=337.07 Aligned_cols=296 Identities=16% Similarity=0.165 Sum_probs=188.0
Q ss_pred CCCHHHH-----HHHHHHH-----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 495 QLNRVQS-----RVYKSAL-----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 495 ~l~~iQ~-----~~i~~~l-----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
.|+++|+ ++++.++ ..++++|++||||||||++|++++++.+... +.+++|++||++||.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~----------~~~~lilaPTr~La~ 284 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK----------RLRTAVLAPTRVVAA 284 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCcEEEEccHHHHHH
Confidence 8999999 9998776 2567899999999999999999999887652 348999999999999
Q ss_pred HHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHH
Q 000114 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2158)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le 644 (2158)
|+++.+..+ ++. ..++... .....+.-+-+.+.+. +++.......++++++|||||+|++.... .
T Consensus 285 Q~~~~l~~~----~i~--~~~~~l~--~v~tp~~ll~~l~~~~---l~~~l~~~~~l~~l~lvViDEaH~~~~~~----~ 349 (673)
T 2wv9_A 285 EMAEALRGL----PVR--YLTPAVQ--REHSGNEIVDVMCHAT---LTHRLMSPLRVPNYNLFVMDEAHFTDPAS----I 349 (673)
T ss_dssp HHHHHTTTS----CCE--ECCC-----CCCCSCCCEEEEEHHH---HHHHHHSSSCCCCCSEEEEESTTCCCHHH----H
T ss_pred HHHHHHhcC----Cee--eeccccc--ccCCHHHHHHHHHhhh---hHHHHhcccccccceEEEEeCCcccCccH----H
Confidence 999888643 322 1111110 0000011122233332 22222222457889999999999982111 1
Q ss_pred HHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHH
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCY 724 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~ 724 (2158)
.....+.... ....+++++||||++.. +..+ .....| +......+........ +
T Consensus 350 ~~~~~l~~~~--~~~~~~vl~~SAT~~~~--i~~~------------~~~~~~--i~~v~~~~~~~~~~~~--------l 403 (673)
T 2wv9_A 350 AARGYIATRV--EAGEAAAIFMTATPPGT--SDPF------------PDTNSP--VHDVSSEIPDRAWSSG--------F 403 (673)
T ss_dssp HHHHHHHHHH--HTTSCEEEEECSSCTTC--CCSS------------CCCSSC--EEEEECCCCSSCCSSC--------C
T ss_pred HHHHHHHHhc--cccCCcEEEEcCCCChh--hhhh------------cccCCc--eEEEeeecCHHHHHHH--------H
Confidence 1112221111 12578999999998732 1111 111111 1110000111111111 1
Q ss_pred HHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCC
Q 000114 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (2158)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl 804 (2158)
..+.+ .++++||||++++.++.++..|...+ ..++.+||
T Consensus 404 ~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g-------------------------------------~~v~~lHg-- 442 (673)
T 2wv9_A 404 EWITD--YAGKTVWFVASVKMSNEIAQCLQRAG-------------------------------------KRVIQLNR-- 442 (673)
T ss_dssp HHHHS--CCSCEEEECSSHHHHHHHHHHHHTTT-------------------------------------CCEEEECS--
T ss_pred HHHHh--CCCCEEEEECCHHHHHHHHHHHHhCC-------------------------------------CeEEEeCh--
Confidence 11211 37899999999999999999887532 23677898
Q ss_pred CHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccc------cCCCCC----ccccCCHHHHHHhhcccCCC
Q 000114 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI------YNPEKG----AWTELSPLDIMQMLGRAGRP 874 (2158)
Q Consensus 805 ~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~------yd~~~g----~~~~~s~~~~~Qr~GRAGR~ 874 (2158)
.+|..+++.|++|+++|||||+++++|||+| +++||++... ||...+ .-.+.|..+|+||+|||||.
T Consensus 443 --~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~ 519 (673)
T 2wv9_A 443 --KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRN 519 (673)
T ss_dssp --SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCC
T ss_pred --HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCC
Confidence 3899999999999999999999999999999 9999985422 222100 01345899999999999997
Q ss_pred CCCCccEEEEEc
Q 000114 875 QYDSYGEGIIIT 886 (2158)
Q Consensus 875 g~d~~G~~iil~ 886 (2158)
+ +..|.|++++
T Consensus 520 ~-g~~G~ai~l~ 530 (673)
T 2wv9_A 520 P-SQIGDEYHYG 530 (673)
T ss_dssp S-SCCCEEEEEC
T ss_pred C-CCCCEEEEEE
Confidence 3 3679999995
No 94
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=7.4e-29 Score=324.27 Aligned_cols=284 Identities=19% Similarity=0.161 Sum_probs=191.6
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCc
Q 000114 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (2158)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi 579 (2158)
|++.++.++.++++++++||||||||.+|.+++++. +.+++|++|||+||.|+++.+.+.+ +.
T Consensus 221 ~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------g~~vLVl~PTReLA~Qia~~l~~~~---g~ 283 (666)
T 3o8b_A 221 DNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKAH---GI 283 (666)
T ss_dssp CCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------------TCCEEEEESCHHHHHHHHHHHHHHH---SC
T ss_pred HHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------------CCeEEEEcchHHHHHHHHHHHHHHh---CC
Confidence 344455566677889999999999999999988762 2379999999999999999887754 45
Q ss_pred EEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccc
Q 000114 580 KVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE 659 (2158)
Q Consensus 580 ~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~ 659 (2158)
.++..+|+... ..+++|+|+||+++ +.+. ...++++++|||||||++...+...+..++..+ .. ..
T Consensus 284 ~vg~~vG~~~~----~~~~~IlV~TPGrL--l~~~---~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l----~~-~~ 349 (666)
T 3o8b_A 284 DPNIRTGVRTI----TTGAPVTYSTYGKF--LADG---GCSGGAYDIIICDECHSTDSTTILGIGTVLDQA----ET-AG 349 (666)
T ss_dssp CCEEECSSCEE----CCCCSEEEEEHHHH--HHTT---SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHT----TT-TT
T ss_pred CeeEEECcEec----cCCCCEEEECcHHH--HhCC---CcccCcccEEEEccchhcCccHHHHHHHHHHhh----hh-cC
Confidence 67778887653 34689999999985 3222 245678999999999987444433344333322 21 22
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEE
Q 000114 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIF 739 (2158)
Q Consensus 660 ~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVF 739 (2158)
...++++|||+++. +... ..........+.+. ..+. ... .. .+...++++|||
T Consensus 350 ~~llil~SAT~~~~------i~~~-~p~i~~v~~~~~~~---i~~~---~~~-~~-------------l~~~~~~~vLVF 402 (666)
T 3o8b_A 350 ARLVVLATATPPGS------VTVP-HPNIEEVALSNTGE---IPFY---GKA-IP-------------IEAIRGGRHLIF 402 (666)
T ss_dssp CSEEEEEESSCTTC------CCCC-CTTEEEEECBSCSS---EEET---TEE-EC-------------GGGSSSSEEEEE
T ss_pred CceEEEECCCCCcc------cccC-CcceEEEeecccch---hHHH---Hhh-hh-------------hhhccCCcEEEE
Confidence 33478889999862 1110 00011111000000 0000 000 00 012247899999
Q ss_pred ecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCC
Q 000114 740 VHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG 819 (2158)
Q Consensus 740 v~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g 819 (2158)
|+|++.++.+++.|...+ ..+..+||+|++.+ |.++
T Consensus 403 v~Tr~~ae~la~~L~~~g-------------------------------------~~v~~lHG~l~q~e-------r~~~ 438 (666)
T 3o8b_A 403 CHSKKKCDELAAKLSGLG-------------------------------------INAVAYYRGLDVSV-------IPTI 438 (666)
T ss_dssp CSCHHHHHHHHHHHHTTT-------------------------------------CCEEEECTTSCGGG-------SCSS
T ss_pred eCCHHHHHHHHHHHHhCC-------------------------------------CcEEEecCCCCHHH-------HHhC
Confidence 999999999999987643 23678899999875 4566
Q ss_pred CceEEEechhhhhccCCCceEEEEeccc------c--cCCCCC---ccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 820 HVQVLVSTATLAWGVNLPAHTVIIKGTQ------I--YNPEKG---AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 820 ~i~VLVaT~tla~GVdlP~v~vVI~~~~------~--yd~~~g---~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
..+|||||+++++|||+| +++||+... - |||..+ ...+.|..+|+||+||||| | ..|. +.+++.
T Consensus 439 ~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~lvt~ 513 (666)
T 3o8b_A 439 GDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YRFVTP 513 (666)
T ss_dssp SCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EEESCC
T ss_pred CCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EEEEec
Confidence 779999999999999998 888885320 0 444322 1145689999999999999 6 6788 888877
Q ss_pred Cc
Q 000114 889 SE 890 (2158)
Q Consensus 889 ~~ 890 (2158)
.+
T Consensus 514 ~e 515 (666)
T 3o8b_A 514 GE 515 (666)
T ss_dssp CC
T ss_pred ch
Confidence 65
No 95
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=1.1e-27 Score=320.80 Aligned_cols=331 Identities=16% Similarity=0.131 Sum_probs=191.5
Q ss_pred CCCCHHHHHHHHHHHc----CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH-H
Q 000114 494 TQLNRVQSRVYKSALS----SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV-G 568 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~----~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~-~ 568 (2158)
..|+++|.++++.++. +.+++++++|||||||++++..+.+.+..+.... ......++|||+|+++|+.|+. +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~--~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRT--GDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSS--CSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccc--cccCCCeEEEEeCCHHHHHHHHHH
Confidence 4799999999999876 6677999999999999998766655544321000 0113468999999999999998 6
Q ss_pred HHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhcc--CCCccccccceEEeecccccccCChhhHHHH
Q 000114 569 NLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS--GDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~--~~~~~l~~v~lIIiDEaH~l~d~rg~~le~i 646 (2158)
.|.. ++..+..+.++. .....+|+|+||+++....+.. ........+++|||||||++....+..+..+
T Consensus 255 ~~~~----~~~~~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~i 325 (590)
T 3h1t_A 255 TFTP----FGDARHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREI 325 (590)
T ss_dssp CCTT----TCSSEEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHH
T ss_pred HHHh----cchhhhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHH
Confidence 5554 344455554432 2246799999999873332211 1112345689999999999865433444444
Q ss_pred HHHHHHHHhhccccccEEEEccccCChH--HHHHHHhccccCceEEecCC-----cccccceeEEEeec-----------
Q 000114 647 VARTVRQIETTKEHIRLVGLSATLPNYE--DVALFLRVNLEKGLFYFDNS-----YRPVPLSQQYIGIQ----------- 708 (2158)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATlpn~~--dv~~~l~~~~~~~~~~f~~~-----~rpv~l~~~~~~~~----------- 708 (2158)
+..+ +..++++||||+.+.. +...+++. ..+.+.-. ...+|.....+...
T Consensus 326 l~~~--------~~~~~l~lTATP~~~~~~~~~~~f~~----~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 393 (590)
T 3h1t_A 326 LEYF--------EPAFQIGMTATPLREDNRDTYRYFGN----PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKG 393 (590)
T ss_dssp HHHS--------TTSEEEEEESSCSCTTTHHHHHHSCS----CSEEECHHHHHHHTSSCCEEEEEEEETTCC--------
T ss_pred HHhC--------CcceEEEeccccccccchhHHHHcCC----ceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccc
Confidence 4332 3467999999976432 23334332 11111000 00011111111110
Q ss_pred ---------------cCChh------HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhccccccccc
Q 000114 709 ---------------VKKPL------QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767 (2158)
Q Consensus 709 ---------------~~~~~------~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~ 767 (2158)
..... .+...+.+.+.+.+......+++||||++++.|..++..|...+.....
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~----- 468 (590)
T 3h1t_A 394 DVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSR----- 468 (590)
T ss_dssp ---------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHT-----
T ss_pred cccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhc-----
Confidence 00000 0111112222222223333579999999999999999999876532110
Q ss_pred ccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCce---EEEechhhhhccCCCceEEEEe
Q 000114 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ---VLVSTATLAWGVNLPAHTVIIK 844 (2158)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~---VLVaT~tla~GVdlP~v~vVI~ 844 (2158)
..+..+..+||.++. +|..+++.|++|..+ |||||+++++|||+|++++||+
T Consensus 469 ------------------------~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~ 523 (590)
T 3h1t_A 469 ------------------------KHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL 523 (590)
T ss_dssp ------------------------TCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE
T ss_pred ------------------------cCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE
Confidence 011236677888763 799999999998876 8999999999999999999998
Q ss_pred cccccCCCCCccccCCHHHHHHhhcccCCCCCC-CccEEEEEcC
Q 000114 845 GTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIIITG 887 (2158)
Q Consensus 845 ~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil~~ 887 (2158)
++++. |...|+||+|||||.+.+ ....++++-.
T Consensus 524 ----~~~~~------s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 524 ----ARVVN------SMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp ----ESCCC------CHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred ----EecCC------ChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 66665 788999999999998753 2344444433
No 96
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=1.1e-27 Score=312.73 Aligned_cols=356 Identities=13% Similarity=0.091 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+|+|..+++.++.|+ ++.++||||||++|.+|++..... +. ++++++||++||.|.++.+. .+...+|+
T Consensus 74 ~p~~VQ~~~i~~ll~G~---Iaem~TGsGKTlaf~LP~l~~~l~---g~--~vlVltPTreLA~Q~~e~~~-~l~~~lgl 144 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC---IAEMRTGEGKTLTATLPAYLNALT---GK--GVHVVTVNDYLAQRDAENNR-PLFEFLGL 144 (853)
T ss_dssp CCCHHHHHHHHHHHSSE---EEECCTTSCHHHHHHHHHHHHHTT---SS--CCEEEESSHHHHHHHHHHHH-HHHHHTTC
T ss_pred CCChHHHhhcccccCCe---eeeecCCchHHHHHHHHHHHHHHc---CC--cEEEEcCCHHHHHHHHHHHH-HHHHhcCC
Confidence 89999999999998764 999999999999999999855433 23 79999999999999999888 56566799
Q ss_pred EEEEEcCCcchhhhc-ccCCcEEEeCHHHH-HHHHhhhh----ccccccceeEEEecccccccCCCC--------Ch--H
Q 000114 1421 RVVELTGETAMDLKL-LEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIGGQGG--------PV--L 1484 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~-l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~llIiDEaH~l~~~~g--------~~--~ 1484 (2158)
+|+.++|+.+...+. ...++|+|+||+++ .++++... ....++++.++|+||||.++.+.| +. -
T Consensus 145 ~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~ 224 (853)
T 2fsf_A 145 TVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDS 224 (853)
T ss_dssp CEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccc
Confidence 999999998765433 33579999999998 56665421 234578899999999998873222 10 0
Q ss_pred HHHHHHHHHHHhhcCC--------------------CceEE------------------------EeccCCCC-hHHHHH
Q 000114 1485 EVIVSRMRYIASQVEN--------------------KIRIV------------------------ALSTSLAN-AKDLGE 1519 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~--------------------~~riV------------------------~lSATl~n-~~dl~~ 1519 (2158)
..+...+..+...++. ..++. ++|||.+. ...+..
T Consensus 225 ~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~ 304 (853)
T 2fsf_A 225 SEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTA 304 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHH
Confidence 1112222222222221 23332 67888643 111111
Q ss_pred Hh------ccCCCceE---------ecCCCC-----------cc------ccc---EEEEecccccchH-----------
Q 000114 1520 WI------GATSHGLF---------NFPPGV-----------RP------VPL---EIHIQGVDITNFE----------- 1553 (2158)
Q Consensus 1520 wl------~~~~~~i~---------~f~~~~-----------rp------v~l---~~~i~~~~~~~~~----------- 1553 (2158)
.+ ......++ .|.... .+ +.+ ..........++.
T Consensus 305 al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTG 384 (853)
T 2fsf_A 305 ALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG 384 (853)
T ss_dssp ----------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEEC
T ss_pred HHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCC
Confidence 00 00000000 000000 00 000 0000000000000
Q ss_pred ------HH--------------------------HHhcChHHHHHHH----HhHhcCCCEEEEecChHHHHHHHHHHHhh
Q 000114 1554 ------AR--------------------------MQAMTKPTFTAIV----QHAKNEKPALVFVPSRKYVRLTAVDLMTY 1597 (2158)
Q Consensus 1554 ------~~--------------------------~~~~~k~~~~~i~----~~~~~~~~~IVFv~sr~~~~~~a~~L~~~ 1597 (2158)
.. ...-....+.++. .....+.|+||||+|++.++.++..|..
T Consensus 385 Ta~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~- 463 (853)
T 2fsf_A 385 TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTK- 463 (853)
T ss_dssp TTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHH-
T ss_pred CchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHH-
Confidence 00 0000112233333 2224678999999999999999876632
Q ss_pred cccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCc
Q 000114 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTA 1677 (2158)
Q Consensus 1598 ~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~ 1677 (2158)
.+..+..+||++...+|..+.+.|+.| .|+|||++++||+|++.
T Consensus 464 ----------------------------------~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l 507 (853)
T 2fsf_A 464 ----------------------------------AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVL 507 (853)
T ss_dssp ----------------------------------TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCT
T ss_pred ----------------------------------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccC
Confidence 244577899999999999999999988 69999999999999996
Q ss_pred --------------------------------c-----EEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1678 --------------------------------H-----LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1678 --------------------------------~-----~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
+ .+|| ++..|.+...|.||+||+||.| ..|.
T Consensus 508 ~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI----------~te~pes~riy~qr~GRTGRqG--d~G~ 575 (853)
T 2fsf_A 508 GGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHII----------GTERHESRRIDNQLRGRSGRQG--DAGS 575 (853)
T ss_dssp TCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEE----------ESSCCSSHHHHHHHHTTSSGGG--CCEE
T ss_pred CCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEE----------EccCCCCHHHHHhhccccccCC--CCee
Confidence 3 6888 6778889999999999999987 7888
Q ss_pred EEEEecCChH-------HHHHHHh-----hCCCccccchhhHHHHH
Q 000114 1721 CVILCHAPRK-------EYYKKFL-----YDAFPVESHLHHFLHDN 1754 (2158)
Q Consensus 1721 ~iil~~~~~~-------~~~~k~l-----~~~~piES~L~~~l~d~ 1754 (2158)
++.+++..+. +.+++++ .+..|+++.+.....+.
T Consensus 576 s~~fls~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 621 (853)
T 2fsf_A 576 SRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIAN 621 (853)
T ss_dssp EEEEEETTSGGGGTTCCHHHHTTGGGGCCCTTCCCCCHHHHHHHHH
T ss_pred EEEEecccHHHHHHhhHHHHHHHHHhhCCCCccccchHHHHHHHHH
Confidence 8888765541 2223333 24678888875554443
No 97
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=5.9e-27 Score=305.70 Aligned_cols=357 Identities=15% Similarity=0.115 Sum_probs=238.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|+ .|+|+|..+++.++.|+ |+.++||+|||++|.+|++..... +. .+++|+||++||.|.++.+. .+...
T Consensus 109 G~-rP~~VQ~~~ip~Ll~G~---Iaem~TGeGKTLa~~LP~~l~aL~---g~--~v~VvTpTreLA~Qdae~m~-~l~~~ 178 (922)
T 1nkt_A 109 DQ-RPFDVQVMGAAALHLGN---VAEMKTGEGKTLTCVLPAYLNALA---GN--GVHIVTVNDYLAKRDSEWMG-RVHRF 178 (922)
T ss_dssp SC-CCCHHHHHHHHHHHTTE---EEECCTTSCHHHHTHHHHHHHHTT---TS--CEEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CC-CCCHHHHHHHHhHhcCC---EEEecCCCccHHHHHHHHHHHHHh---CC--CeEEEeCCHHHHHHHHHHHH-HHHhh
Confidence 57 99999999999998754 999999999999999999744333 23 69999999999999999888 56666
Q ss_pred CCcEEEEEcCCcchhhh-cccCCcEEEeCHHHH-HHHHhhh----hccccccceeEEEecccccccC-C-CCC-------
Q 000114 1418 LGMRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIGG-Q-GGP------- 1482 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~----~~~~~l~~v~llIiDEaH~l~~-~-~g~------- 1482 (2158)
+|++|+.+.|+.+...+ ....++|+|+||+++ .++++.. .....++.+.++||||||.++. + +.|
T Consensus 179 lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred cCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 79999999998876533 334579999999998 5555543 1234577899999999998773 2 111
Q ss_pred -hHHHHHHHHHHHHhhcC---------CCceEE-----------------EeccCCCC-hHHHHHH-----h-ccCCCce
Q 000114 1483 -VLEVIVSRMRYIASQVE---------NKIRIV-----------------ALSTSLAN-AKDLGEW-----I-GATSHGL 1528 (2158)
Q Consensus 1483 -~~e~~isrl~~i~~~~~---------~~~riV-----------------~lSATl~n-~~dl~~w-----l-~~~~~~i 1528 (2158)
.-..+...+..+...++ +..++. ++|||.+. ...+... + ......+
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 11234555666666665 567777 78999765 2233221 1 1111111
Q ss_pred Ee------cCC-CCcc-------------------c---ccEEEEecccccchH-----------------HH-------
Q 000114 1529 FN------FPP-GVRP-------------------V---PLEIHIQGVDITNFE-----------------AR------- 1555 (2158)
Q Consensus 1529 ~~------f~~-~~rp-------------------v---~l~~~i~~~~~~~~~-----------------~~------- 1555 (2158)
+. ... ..|. + +-..........++. ..
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 00 000 0000 0 001111111100000 00
Q ss_pred -------------------HHhcChHHHHHHH----HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCC
Q 000114 1556 -------------------MQAMTKPTFTAIV----QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612 (2158)
Q Consensus 1556 -------------------~~~~~k~~~~~i~----~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~ 1612 (2158)
...-....+.++. .....+.|+||||+|++.++.++..|..
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~---------------- 482 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTK---------------- 482 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH----------------
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH----------------
Confidence 0000011232332 2224678999999999999999876632
Q ss_pred cccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCcc--------------
Q 000114 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH-------------- 1678 (2158)
Q Consensus 1613 ~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~-------------- 1678 (2158)
.+..+..+||++...++..+.+.|+.| .|+|||++++||+|++..
T Consensus 483 -------------------~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~ 541 (922)
T 1nkt_A 483 -------------------RRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRER 541 (922)
T ss_dssp -------------------TTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHT
T ss_pred -------------------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhc
Confidence 244578899999988888888888888 699999999999999953
Q ss_pred --------------------------------------EEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1679 --------------------------------------LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1679 --------------------------------------~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
.+|| ++..|.+...|.|++||+||.| ..|.
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI----------~te~pes~riy~qr~GRTGRqG--dpG~ 609 (922)
T 1nkt_A 542 GLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVL----------GTERHESRRIDNQLRGRSGRQG--DPGE 609 (922)
T ss_dssp TCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEE----------ECSCCSSHHHHHHHHHTSSGGG--CCEE
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEE----------eccCCCCHHHHHHHhcccccCC--CCee
Confidence 6788 6778889999999999999987 7888
Q ss_pred EEEEecCChHH-------HHHHHh-----hCCCccccchhhHHHH
Q 000114 1721 CVILCHAPRKE-------YYKKFL-----YDAFPVESHLHHFLHD 1753 (2158)
Q Consensus 1721 ~iil~~~~~~~-------~~~k~l-----~~~~piES~L~~~l~d 1753 (2158)
++.+++..+.- .+.+++ .+..|+++.+.....+
T Consensus 610 s~fflSleD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~ie 654 (922)
T 1nkt_A 610 SRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTRAIK 654 (922)
T ss_dssp EEEEEETTSHHHHHTTHHHHHHHHHHTTCCTTSCCCCHHHHHHHH
T ss_pred EEEEechhHHHHHHhhhHHHHHHHHHhCCCCCcccccHHHHHHHH
Confidence 88887765421 122222 3467888888555443
No 98
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.95 E-value=2.1e-28 Score=319.39 Aligned_cols=301 Identities=17% Similarity=0.188 Sum_probs=208.3
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+|+|.++++.++.++ ++++++|||+|||++|+.++... ++ +++|++|+++|+.|+++++.+ | |.
T Consensus 93 ~l~~~Q~~ai~~i~~~~-~~ll~~~TGsGKT~~~l~~i~~~------~~--~~Lvl~P~~~L~~Q~~~~~~~-~----~~ 158 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL------ST--PTLIVVPTLALAEQWKERLGI-F----GE 158 (472)
T ss_dssp CBCHHHHHHHHHHTTTT-EEEEECCTTSCHHHHHHHHHHHH------CS--CEEEEESSHHHHHHHHHHGGG-G----CG
T ss_pred CcCHHHHHHHHHHHhcC-CEEEEeCCCCCHHHHHHHHHHHc------CC--CEEEEECCHHHHHHHHHHHHh-C----CC
Confidence 79999999999998754 59999999999999998888753 33 899999999999999998885 5 56
Q ss_pred E-EEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcC
Q 000114 1421 R-VVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1421 ~-v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
+ ++.++|+... .++|+|+||+.+......+ .+++++|||||+|.+.+.. +..+ ...+
T Consensus 159 ~~v~~~~g~~~~------~~~Ivv~T~~~l~~~~~~~-----~~~~~liIvDEaH~~~~~~---~~~~-------~~~~- 216 (472)
T 2fwr_A 159 EYVGEFSGRIKE------LKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAES---YVQI-------AQMS- 216 (472)
T ss_dssp GGEEEBSSSCBC------CCSEEEEEHHHHHHTHHHH-----TTTCSEEEEETGGGTTSTT---THHH-------HHTC-
T ss_pred cceEEECCCcCC------cCCEEEEEcHHHHHHHHHh-----cCCCCEEEEECCcCCCChH---HHHH-------HHhc-
Confidence 7 8899987653 4689999999876554332 2468999999999987543 2222 2222
Q ss_pred CCceEEEeccCCCChH----HHHHHhccCCCc--eEe----cCCCCcccccEEEEeccc---------------------
Q 000114 1500 NKIRIVALSTSLANAK----DLGEWIGATSHG--LFN----FPPGVRPVPLEIHIQGVD--------------------- 1548 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~----dl~~wl~~~~~~--i~~----f~~~~rpv~l~~~i~~~~--------------------- 1548 (2158)
...++++||||+.+.. .+..+++..... ... +.+......+.+......
T Consensus 217 ~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (472)
T 2fwr_A 217 IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT 296 (472)
T ss_dssp CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT
T ss_pred CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3678999999997532 344444421100 000 001111111111100000
Q ss_pred ---ccchH----------------------HHHHhcChHHHHH---HHHhHhcCCCEEEEecChHHHHHHHHHHHhhccc
Q 000114 1549 ---ITNFE----------------------ARMQAMTKPTFTA---IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSM 1600 (2158)
Q Consensus 1549 ---~~~~~----------------------~~~~~~~k~~~~~---i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~ 1600 (2158)
...+. ............. +... ..++++||||++++.++.++..|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l------ 369 (472)
T 2fwr_A 297 LRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVF------ 369 (472)
T ss_dssp TTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHT------
T ss_pred ccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHh------
Confidence 00000 0000011111122 2222 45789999999999988777433
Q ss_pred CCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEE
Q 000114 1601 DGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLV 1680 (2158)
Q Consensus 1601 ~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~v 1680 (2158)
++..+||+++..+|..+++.|++|.++|||||+++++|+|+|++.+
T Consensus 370 ----------------------------------~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~ 415 (472)
T 2fwr_A 370 ----------------------------------LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANV 415 (472)
T ss_dssp ----------------------------------TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSE
T ss_pred ----------------------------------CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcE
Confidence 2567999999999999999999999999999999999999999998
Q ss_pred EEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCC-CceEEEEEecCC
Q 000114 1681 VVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHAP 1728 (2158)
Q Consensus 1681 VI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d-~~G~~iil~~~~ 1728 (2158)
|| +...+.++..|+||+|||||.|.+ +.+.++.++...
T Consensus 416 Vi----------~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 416 GV----------IMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp EE----------EECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred EE----------EECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 88 344566899999999999999855 466666677654
No 99
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.95 E-value=5e-28 Score=320.81 Aligned_cols=299 Identities=14% Similarity=0.084 Sum_probs=201.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
...++|+|.++++.+.+ +++++++||||||||++|++|++..+.. .+. ++||++||++||.|+++.++
T Consensus 169 ~~~~lpiq~~~i~~l~~-g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~--~vLvl~PtreLa~Qi~~~l~------- 236 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRK-KRLTIMDLHPGAGKTKRILPSIVREALK--RRL--RTLILAPTRVVAAEMEEALR------- 236 (618)
T ss_dssp CCCCCCCCCCCGGGGST-TCEEEECCCTTSSTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT-------
T ss_pred cccCCCccccCHHHHhc-CCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCC--eEEEEcChHHHHHHHHHHhc-------
Confidence 46788998887666654 6679999999999999999999988866 233 89999999999999998765
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhc
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~ 1498 (2158)
+..+. +.+... ....-....+.++|.+.+...+.. ...++++++||+||||++. ..+...+..+.....
T Consensus 237 ~~~v~-~~~~~l-~~~~tp~~~i~~~t~~~l~~~l~~---~~~l~~~~~iViDEah~~~----~~~~~~~~~i~~~l~-- 305 (618)
T 2whx_A 237 GLPIR-YQTPAV-KSDHTGREIVDLMCHATFTTRLLS---STRVPNYNLIVMDEAHFTD----PCSVAARGYISTRVE-- 305 (618)
T ss_dssp TSCEE-ECCTTS-SCCCCSSSCEEEEEHHHHHHHHHH---CSSCCCCSEEEEESTTCCS----HHHHHHHHHHHHHHH--
T ss_pred CCcee-Eecccc-eeccCCCceEEEEChHHHHHHHhc---cccccCCeEEEEECCCCCC----ccHHHHHHHHHHHhc--
Confidence 23343 222211 101112235778888876654332 3458899999999999982 122223333322221
Q ss_pred CCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEE
Q 000114 1499 ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPAL 1578 (2158)
Q Consensus 1499 ~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~I 1578 (2158)
..+.|+++||||+++.. ..+.... .+.+++... ++.... +..+..+. ...+++|
T Consensus 306 ~~~~q~il~SAT~~~~~--~~~~~~~----------~~~~~v~~~---~~~~~~--------~~ll~~l~---~~~~~~L 359 (618)
T 2whx_A 306 MGEAAAIFMTATPPGST--DPFPQSN----------SPIEDIERE---IPERSW--------NTGFDWIT---DYQGKTV 359 (618)
T ss_dssp HTSCEEEEECSSCTTCC--CSSCCCS----------SCEEEEECC---CCSSCC--------SSSCHHHH---HCCSCEE
T ss_pred ccCccEEEEECCCchhh--hhhhccC----------Cceeeeccc---CCHHHH--------HHHHHHHH---hCCCCEE
Confidence 25789999999997541 1111110 011111100 111110 11112222 3467999
Q ss_pred EEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcC
Q 000114 1579 VFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG 1658 (2158)
Q Consensus 1579 VFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g 1658 (2158)
|||+|++.|+.++..|.. .+..+..+||. +|..+++.|++|
T Consensus 360 VF~~s~~~a~~l~~~L~~-----------------------------------~g~~v~~lhg~----~R~~~l~~F~~g 400 (618)
T 2whx_A 360 WFVPSIKAGNDIANCLRK-----------------------------------SGKRVIQLSRK----TFDTEYPKTKLT 400 (618)
T ss_dssp EECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTT----THHHHTTHHHHS
T ss_pred EEECChhHHHHHHHHHHH-----------------------------------cCCcEEEEChH----HHHHHHHhhcCC
Confidence 999999999999977632 23458889984 788899999999
Q ss_pred CceEEEecCccccccCCCccEEEEecceee-----cCC----CCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEec
Q 000114 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYY-----DGQ----ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2158)
Q Consensus 1659 ~i~VLVaT~~la~Gvdlp~~~vVI~gt~~y-----d~~----~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~ 1726 (2158)
+++|||||+++++|+|+|...||..|..+. +.. .++..|.+..+|+||+|||||.| ...|.|++++.
T Consensus 401 ~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g-~~~G~ai~l~~ 476 (618)
T 2whx_A 401 DWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP-AQEDDQYVFSG 476 (618)
T ss_dssp CCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEECS
T ss_pred CcEEEEECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCC-CCCCeEEEEcc
Confidence 999999999999999999555555554322 111 35567889999999999999986 45889999986
No 100
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.95 E-value=8.7e-28 Score=308.48 Aligned_cols=276 Identities=16% Similarity=0.153 Sum_probs=174.9
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
..++|++++||||||||++|++|+++.+... +. +++|++||++||.|+++.++ ++.+...++...
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~--~~lil~Ptr~La~Q~~~~l~-------~~~v~~~~~~~~---- 70 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR--RL--RTLVLAPTRVVLSEMKEAFH-------GLDVKFHTQAFS---- 70 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TC--CEEEEESSHHHHHHHHHHTT-------TSCEEEESSCCC----
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CC--eEEEEcchHHHHHHHHHHHh-------cCCeEEecccce----
Confidence 4567899999999999999999999887652 33 89999999999999998776 223333322211
Q ss_pred cccCCcEEEeCHHHHHH------HHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEec
Q 000114 1435 LLEKGQIIISTPEKWDA------LSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~------l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lS 1508 (2158)
.++||+++.. +.+++.....+++++++|+||+|++. ..+...+..+..+.. ..+.++++||
T Consensus 71 -------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~----~~~~~~~~~~~~~~~--~~~~~~l~~S 137 (440)
T 1yks_A 71 -------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLD----PASIAARGWAAHRAR--ANESATILMT 137 (440)
T ss_dssp -------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCS----HHHHHHHHHHHHHHH--TTSCEEEEEC
T ss_pred -------eccCCccceeeecccchhHhhhCcccccCccEEEEECccccC----cchHHHHHHHHHHhc--cCCceEEEEe
Confidence 2555544321 22233334457899999999999982 122222222222221 3579999999
Q ss_pred cCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHH
Q 000114 1509 TSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVR 1588 (2158)
Q Consensus 1509 ATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~ 1588 (2158)
||+++.. ..+.. . +.++............ ...+..+. ..++++||||++++.|+
T Consensus 138 AT~~~~~--~~~~~-----------~--~~~~~~~~~~~~~~~~--------~~~~~~l~---~~~~~~lVF~~s~~~a~ 191 (440)
T 1yks_A 138 ATPPGTS--DEFPH-----------S--NGEIEDVQTDIPSEPW--------NTGHDWIL---ADKRPTAWFLPSIRAAN 191 (440)
T ss_dssp SSCTTCC--CSSCC-----------C--SSCEEEEECCCCSSCC--------SSSCHHHH---HCCSCEEEECSCHHHHH
T ss_pred CCCCchh--hhhhh-----------c--CCCeeEeeeccChHHH--------HHHHHHHH---hcCCCEEEEeCCHHHHH
Confidence 9996431 01110 0 1111111111111110 11112222 34789999999999999
Q ss_pred HHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCc
Q 000114 1589 LTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668 (2158)
Q Consensus 1589 ~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~ 1668 (2158)
.++..|.. .+..+..+|| ++|..+++.|++|+++|||||++
T Consensus 192 ~l~~~L~~-----------------------------------~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v 232 (440)
T 1yks_A 192 VMAASLRK-----------------------------------AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDI 232 (440)
T ss_dssp HHHHHHHH-----------------------------------TTCCEEECCS----SSCC--------CCCSEEEESSS
T ss_pred HHHHHHHH-----------------------------------cCCCEEEecc----hhHHHHHhhhcCCCceEEEECCh
Confidence 99876632 2456899999 57889999999999999999999
Q ss_pred cccccCCCccEEEE-eccee---e-cCC----CCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1669 MCWGVPLTAHLVVV-MGTQY---Y-DGQ----ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1669 la~Gvdlp~~~vVI-~gt~~---y-d~~----~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
+++|||+| +.+|| .|+.+ | +.. .++..|.+..+|+||+|||||.| ...|.|++++
T Consensus 233 ~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g-~~~g~~~~l~ 296 (440)
T 1yks_A 233 AEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP-NRDGDSYYYS 296 (440)
T ss_dssp TTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEEC
T ss_pred hheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCC-CCCceEEEEe
Confidence 99999999 66655 34422 1 111 12456789999999999999974 3689999996
No 101
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=9e-28 Score=307.74 Aligned_cols=280 Identities=17% Similarity=0.207 Sum_probs=177.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
++++|++||||||||++|++++++.+... +.+++|++||++||.|+++.+. |+.+..++|....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~----------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK----------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS 65 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc
Confidence 46799999999999999999999766542 3489999999999999988775 4566666665321
Q ss_pred CHhhhccccEEEcchhHHH-HHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 591 TRQQIEETQIIVTTPEKWD-IITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 591 ~~~~~~~~~IiV~TPekld-~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
....+..+.+.|.+.+. .+.. ...+.++++|||||+|++. +........+.... ....+++++||||
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~----~~~~~~l~~vViDEaH~~~----~~~~~~~~~l~~~~--~~~~~~~l~~SAT 133 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQ----GVRVPNYNLYIMDEAHFLD----PASVAARGYIETRV--SMGDAGAIFMTAT 133 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHH----TCCCCCCSEEEEESTTCCS----HHHHHHHHHHHHHH--HTTSCEEEEEESS
T ss_pred --cCCCCceEEEEchHHHHHHHhc----CccccCCCEEEEeCCccCC----ccHHHHHHHHHHHh--hCCCCcEEEEeCC
Confidence 11224556777888652 2222 2347789999999999862 22222222222221 2457999999999
Q ss_pred cCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHH
Q 000114 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKT 749 (2158)
Q Consensus 670 lpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~ 749 (2158)
+++. +.. +.....| +......+..... ..+ +..+.+ .++++||||++++.++.+
T Consensus 134 ~~~~--~~~------------~~~~~~~--i~~~~~~~~~~~~----~~~----~~~l~~--~~~~~lVF~~~~~~~~~l 187 (431)
T 2v6i_A 134 PPGT--TEA------------FPPSNSP--IIDEETRIPDKAW----NSG----YEWITE--FDGRTVWFVHSIKQGAEI 187 (431)
T ss_dssp CTTC--CCS------------SCCCSSC--CEEEECCCCSSCC----SSC----CHHHHS--CSSCEEEECSSHHHHHHH
T ss_pred CCcc--hhh------------hcCCCCc--eeeccccCCHHHH----HHH----HHHHHc--CCCCEEEEeCCHHHHHHH
Confidence 8741 111 1111111 1100000111110 111 111211 267899999999999999
Q ss_pred HHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechh
Q 000114 750 ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829 (2158)
Q Consensus 750 a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~t 829 (2158)
+..|...+ ..++.+||+ +|..+++.|++|+++|||||++
T Consensus 188 ~~~L~~~~-------------------------------------~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v 226 (431)
T 2v6i_A 188 GTCLQKAG-------------------------------------KKVLYLNRK----TFESEYPKCKSEKWDFVITTDI 226 (431)
T ss_dssp HHHHHHTT-------------------------------------CCEEEESTT----THHHHTTHHHHSCCSEEEECGG
T ss_pred HHHHHHcC-------------------------------------CeEEEeCCc----cHHHHHHhhcCCCCeEEEECch
Confidence 99887642 237788987 5888999999999999999999
Q ss_pred hhhccCCCceEEEEecccccCC---CC----CccccCCHHHHHHhhcccCCCCCCCccEEEEEcC
Q 000114 830 LAWGVNLPAHTVIIKGTQIYNP---EK----GAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2158)
Q Consensus 830 la~GVdlP~v~vVI~~~~~yd~---~~----g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2158)
+++|||+| +..||++...+.| .. ....+.+..+|+||+|||||.|.. .|.++++..
T Consensus 227 ~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~-~~~~~~~~~ 289 (431)
T 2v6i_A 227 SEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK-LGDIYAYSG 289 (431)
T ss_dssp GGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCCEEEECS
T ss_pred HHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCC-CCeEEEEcC
Confidence 99999999 5444432111100 00 001234889999999999997632 456666653
No 102
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.95 E-value=3.4e-28 Score=324.07 Aligned_cols=294 Identities=15% Similarity=0.121 Sum_probs=192.4
Q ss_pred CCCHHHH-----HHHHHHh-----cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHH
Q 000114 1341 HFNPIQT-----QVFTVLY-----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1341 ~~~~iQ~-----q~~~~l~-----~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
+|+|+|. ++++.++ ..+++++++||||||||++|++|+++.+.. .+. +++|++||++||.|+++.+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--~~~--~~lilaPTr~La~Q~~~~l 290 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--KRL--RTAVLAPTRVVAAEMAEAL 290 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCC--cEEEEccHHHHHHHHHHHH
Confidence 8999999 9998876 257789999999999999999999988765 233 8999999999999999877
Q ss_pred HHHhcCCCCcEEEEEcCCcchhhhcccC--CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1411 EIKFGQGLGMRVVELTGETAMDLKLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~~~~~~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
+ .+ ++ ...++... .... .-+-+.+.+.+ .+++.....++++++|||||+|++. .......
T Consensus 291 ~-~~----~i--~~~~~~l~----~v~tp~~ll~~l~~~~l---~~~l~~~~~l~~l~lvViDEaH~~~----~~~~~~~ 352 (673)
T 2wv9_A 291 R-GL----PV--RYLTPAVQ----REHSGNEIVDVMCHATL---THRLMSPLRVPNYNLFVMDEAHFTD----PASIAAR 352 (673)
T ss_dssp T-TS----CC--EECCC-------CCCCSCCCEEEEEHHHH---HHHHHSSSCCCCCSEEEEESTTCCC----HHHHHHH
T ss_pred h-cC----Ce--eeeccccc----ccCCHHHHHHHHHhhhh---HHHHhcccccccceEEEEeCCcccC----ccHHHHH
Confidence 6 22 22 22222111 0011 12333444432 3333334568899999999999982 1122222
Q ss_pred HHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHH
Q 000114 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIV 1568 (2158)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~ 1568 (2158)
..+..+.. ....++++||||++.. +..+..... ++......+..... ...+..+.
T Consensus 353 ~~l~~~~~--~~~~~vl~~SAT~~~~-------------i~~~~~~~~--~i~~v~~~~~~~~~--------~~~l~~l~ 407 (673)
T 2wv9_A 353 GYIATRVE--AGEAAAIFMTATPPGT-------------SDPFPDTNS--PVHDVSSEIPDRAW--------SSGFEWIT 407 (673)
T ss_dssp HHHHHHHH--TTSCEEEEECSSCTTC-------------CCSSCCCSS--CEEEEECCCCSSCC--------SSCCHHHH
T ss_pred HHHHHhcc--ccCCcEEEEcCCCChh-------------hhhhcccCC--ceEEEeeecCHHHH--------HHHHHHHH
Confidence 33333221 2579999999999643 111211111 22211111111111 11112221
Q ss_pred HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHH
Q 000114 1569 QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2158)
Q Consensus 1569 ~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR 1648 (2158)
..++++||||++++.|+.++..|.. .+..+..+|| ++|
T Consensus 408 ---~~~~~~lVF~~s~~~~e~la~~L~~-----------------------------------~g~~v~~lHg----~eR 445 (673)
T 2wv9_A 408 ---DYAGKTVWFVASVKMSNEIAQCLQR-----------------------------------AGKRVIQLNR----KSY 445 (673)
T ss_dssp ---SCCSCEEEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECS----SSH
T ss_pred ---hCCCCEEEEECCHHHHHHHHHHHHh-----------------------------------CCCeEEEeCh----HHH
Confidence 3578999999999999999876632 2445899999 489
Q ss_pred HHHHHHHHcCCceEEEecCccccccCCCccEEEE-eccee-----ecCC----CCcCcCCCHHHHHHhhccCCCCCCCCc
Q 000114 1649 EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQY-----YDGQ----ENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2158)
Q Consensus 1649 ~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI-~gt~~-----yd~~----~~~~~~~s~~~~lQr~GRaGR~g~d~~ 1718 (2158)
..+++.|++|+++|||||+++++|||+| +.+|| .|+.+ |++. ..+..|.+..+|+||+|||||.+ ...
T Consensus 446 ~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~-g~~ 523 (673)
T 2wv9_A 446 DTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP-SQI 523 (673)
T ss_dssp HHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS-SCC
T ss_pred HHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCC-CCC
Confidence 9999999999999999999999999999 55555 34321 3332 12457889999999999999984 478
Q ss_pred eEEEEEe
Q 000114 1719 GKCVILC 1725 (2158)
Q Consensus 1719 G~~iil~ 1725 (2158)
|.|++++
T Consensus 524 G~ai~l~ 530 (673)
T 2wv9_A 524 GDEYHYG 530 (673)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 9999995
No 103
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=6.5e-28 Score=311.63 Aligned_cols=289 Identities=15% Similarity=0.119 Sum_probs=187.2
Q ss_pred HHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcc
Q 000114 1351 TVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETA 1430 (2158)
Q Consensus 1351 ~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~ 1430 (2158)
+.++.++++++++||||||||++|++|++..+.. .+. ++||++||++|+.|+++.+. |..+....+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~--~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~ 83 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--QRL--RTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQ 83 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--TTC--CEEEEECSHHHHHHHHHHTT-------TSCEEECC----
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--CCC--cEEEECchHHHHHHHHHHhc-------CceEeEEecccc
Confidence 4566778889999999999999999999988765 233 89999999999999998776 334433333221
Q ss_pred hhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccC
Q 000114 1431 MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1431 ~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSAT 1510 (2158)
.. .-....+.++|.+.+... +.....++++++|||||||.+.... ......+..+. ...+.|+|+||||
T Consensus 84 ~~--~t~~~~i~~~~~~~l~~~---l~~~~~l~~~~~iViDEaH~~~~~~----~~~~~~~~~~~--~~~~~~~il~SAT 152 (459)
T 2z83_A 84 RE--HQGNEIVDVMCHATLTHR---LMSPNRVPNYNLFVMDEAHFTDPAS----IAARGYIATKV--ELGEAAAIFMTAT 152 (459)
T ss_dssp ------CCCSEEEEEHHHHHHH---HHSCC-CCCCSEEEESSTTCCSHHH----HHHHHHHHHHH--HTTSCEEEEECSS
T ss_pred cC--CCCCcEEEEEchHHHHHH---hhccccccCCcEEEEECCccCCchh----hHHHHHHHHHh--ccCCccEEEEEcC
Confidence 11 111235777888875433 2334568899999999999752111 11111112111 1358999999999
Q ss_pred CCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHH
Q 000114 1511 LANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLT 1590 (2158)
Q Consensus 1511 l~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~ 1590 (2158)
++.. +..+..... |+.......+...+. ..+..+. ...+++||||+|++.|+.+
T Consensus 153 ~~~~-------------~~~~~~~~~--pi~~~~~~~~~~~~~--------~~~~~l~---~~~~~~LVF~~s~~~~~~l 206 (459)
T 2z83_A 153 PPGT-------------TDPFPDSNA--PIHDLQDEIPDRAWS--------SGYEWIT---EYAGKTVWFVASVKMGNEI 206 (459)
T ss_dssp CTTC-------------CCSSCCCSS--CEEEEECCCCSSCCS--------SCCHHHH---HCCSCEEEECSCHHHHHHH
T ss_pred CCcc-------------hhhhccCCC--CeEEecccCCcchhH--------HHHHHHH---hcCCCEEEEeCChHHHHHH
Confidence 9742 111111111 222111111111110 0111121 2368999999999999999
Q ss_pred HHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccc
Q 000114 1591 AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670 (2158)
Q Consensus 1591 a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la 1670 (2158)
+..|.. .+..+..+|+. +|..+++.|++|+++|||||++++
T Consensus 207 ~~~L~~-----------------------------------~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~ 247 (459)
T 2z83_A 207 AMCLQR-----------------------------------AGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISE 247 (459)
T ss_dssp HHHHHH-----------------------------------TTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC-
T ss_pred HHHHHh-----------------------------------cCCcEEecCHH----HHHHHHhhccCCCceEEEECChHH
Confidence 876632 24457888984 788899999999999999999999
Q ss_pred cccCCCccEEEE-eccee-----ecCCCC----cCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1671 WGVPLTAHLVVV-MGTQY-----YDGQEN----AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1671 ~Gvdlp~~~vVI-~gt~~-----yd~~~~----~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
+|+|+|+ .+|| .|+.+ |++..+ +..|.+..+|+||+|||||.| ...|.|++++...
T Consensus 248 ~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g-~~~G~~~~~~~~~ 313 (459)
T 2z83_A 248 MGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNP-NQVGDEYHYGGAT 313 (459)
T ss_dssp --CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCT-TCCCEEEEECSCC
T ss_pred hCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCC-CCCCeEEEEEccc
Confidence 9999999 5555 34221 333322 457889999999999999987 3488999988775
No 104
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=6.7e-27 Score=299.68 Aligned_cols=282 Identities=16% Similarity=0.135 Sum_probs=187.0
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l 1436 (2158)
+++++++||||||||++|++|+++.+.. .+. +++|++||++|+.|+++.+. |..+..++|..... .-
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~--~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~--~~ 68 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK--KRL--RTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSE--RT 68 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT-------TSCEEEC-----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh--CCC--CEEEECcHHHHHHHHHHHhC-------CCeEEEEecCcccc--CC
Confidence 5679999999999999999999976655 233 89999999999999887654 45666666643211 11
Q ss_pred cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHH
Q 000114 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516 (2158)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~d 1516 (2158)
....+.+.|.+.+...+. ....+++++++||||+|+++ +.+......+..+. .+.+.++++||||+++.
T Consensus 69 ~~~~~~~~~~~~l~~~l~---~~~~~~~l~~vViDEaH~~~----~~~~~~~~~l~~~~--~~~~~~~l~~SAT~~~~-- 137 (431)
T 2v6i_A 69 GNEIVDFMCHSTFTMKLL---QGVRVPNYNLYIMDEAHFLD----PASVAARGYIETRV--SMGDAGAIFMTATPPGT-- 137 (431)
T ss_dssp CCCSEEEEEHHHHHHHHH---HTCCCCCCSEEEEESTTCCS----HHHHHHHHHHHHHH--HTTSCEEEEEESSCTTC--
T ss_pred CCceEEEEchHHHHHHHh---cCccccCCCEEEEeCCccCC----ccHHHHHHHHHHHh--hCCCCcEEEEeCCCCcc--
Confidence 123567778887643322 24457899999999999872 22333444444443 24579999999999752
Q ss_pred HHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHh
Q 000114 1517 LGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT 1596 (2158)
Q Consensus 1517 l~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~ 1596 (2158)
+..+.+...| +......++.... ...+..+. ..++++||||++++.|+.++..|..
T Consensus 138 -----------~~~~~~~~~~--i~~~~~~~~~~~~--------~~~~~~l~---~~~~~~lVF~~~~~~~~~l~~~L~~ 193 (431)
T 2v6i_A 138 -----------TEAFPPSNSP--IIDEETRIPDKAW--------NSGYEWIT---EFDGRTVWFVHSIKQGAEIGTCLQK 193 (431)
T ss_dssp -----------CCSSCCCSSC--CEEEECCCCSSCC--------SSCCHHHH---SCSSCEEEECSSHHHHHHHHHHHHH
T ss_pred -----------hhhhcCCCCc--eeeccccCCHHHH--------HHHHHHHH---cCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 1112222112 1111111111111 11112222 2367899999999999999866632
Q ss_pred hcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCC
Q 000114 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT 1676 (2158)
Q Consensus 1597 ~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp 1676 (2158)
.+..++.+||+ +|..+++.|++|+++|||||+++++|+|+|
T Consensus 194 -----------------------------------~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip 234 (431)
T 2v6i_A 194 -----------------------------------AGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK 234 (431)
T ss_dssp -----------------------------------TTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC
T ss_pred -----------------------------------cCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC
Confidence 14568999997 688899999999999999999999999999
Q ss_pred ccEEEEecceee---c---CCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEec
Q 000114 1677 AHLVVVMGTQYY---D---GQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2158)
Q Consensus 1677 ~~~vVI~gt~~y---d---~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~ 1726 (2158)
...||..|+.+. + -..++..|.+..+|+||+|||||.| ...|.++++..
T Consensus 235 ~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g-~~~~~~~~~~~ 289 (431)
T 2v6i_A 235 ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNP-EKLGDIYAYSG 289 (431)
T ss_dssp CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCCEEEECS
T ss_pred CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCC-CCCCeEEEEcC
Confidence 766665544331 1 0124567789999999999999987 34555666653
No 105
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.94 E-value=4.1e-27 Score=315.40 Aligned_cols=329 Identities=16% Similarity=0.134 Sum_probs=190.2
Q ss_pred CCCCHHHHHHHHHHhc----CCCcEEEEccCCchhHHHHHHHHHHHHHhhc----CCCceEEEEEcccHHHHHHHH-HHH
Q 000114 1340 KHFNPIQTQVFTVLYN----TDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEALAKERY-RDW 1410 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~----~~~nvli~ApTGSGKTl~a~l~il~~l~~~~----~~~~~~~v~IaP~raLa~q~~-~~~ 1410 (2158)
..++|+|.++++.+++ +++++++++|||||||++++..+.+.+.... .....++|||+|+++|+.|++ +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3799999999999876 6678999999999999998666555544310 002338999999999999998 655
Q ss_pred HHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhh--hhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1411 EIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR--WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~--~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
+ .|+ ..+..+.++. ....++|+|+||+++....+. +........+++||+||||++....+..+..++
T Consensus 257 ~-~~~----~~~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il 326 (590)
T 3h1t_A 257 T-PFG----DARHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREIL 326 (590)
T ss_dssp T-TTC----SSEEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHH
T ss_pred H-hcc----hhhhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHH
Confidence 5 443 3344444432 224569999999998765432 112234567999999999998754333444443
Q ss_pred HHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecC-----CCCcccccEEEEecc--------------
Q 000114 1489 SRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFP-----PGVRPVPLEIHIQGV-------------- 1547 (2158)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~-----~~~rpv~l~~~i~~~-------------- 1547 (2158)
.. ++ ..++++||||+.+. .+...+++.... .+.+. ....| ........
T Consensus 327 ~~-------~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~-~~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 395 (590)
T 3h1t_A 327 EY-------FE-PAFQIGMTATPLREDNRDTYRYFGNPIY-TYSLRQGIDDGFLAP--YRVHRVISEVDAAGWRPSKGDV 395 (590)
T ss_dssp HH-------ST-TSEEEEEESSCSCTTTHHHHHHSCSCSE-EECHHHHHHHTSSCC--EEEEEEEETTCC----------
T ss_pred Hh-------CC-cceEEEeccccccccchhHHHHcCCceE-ecCHHHHhhCCccCC--cEEEEeeeeeeccccccccccc
Confidence 32 22 47899999998753 345566654211 11000 00011 11110000
Q ss_pred ------------cccchHHHH--HhcChHHHHHHH---HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccC
Q 000114 1548 ------------DITNFEARM--QAMTKPTFTAIV---QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL 1610 (2158)
Q Consensus 1548 ------------~~~~~~~~~--~~~~k~~~~~i~---~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~ 1610 (2158)
....+.... ....+.....+. ....+.+++||||++++.|+.++..|.....
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~----------- 464 (590)
T 3h1t_A 396 DRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNS----------- 464 (590)
T ss_dssp -------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTH-----------
T ss_pred cccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhh-----------
Confidence 000111000 000111112222 2224567899999999999999987754211
Q ss_pred CCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCce---EEEecCccccccCCCccEEEEeccee
Q 000114 1611 WPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK---VCVMSSSMCWGVPLTAHLVVVMGTQY 1687 (2158)
Q Consensus 1611 ~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~---VLVaT~~la~Gvdlp~~~vVI~gt~~ 1687 (2158)
.........+..+||.++. +|..+++.|++|..+ |||||+++++|+|+|++.+||
T Consensus 465 ----------------~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi----- 522 (590)
T 3h1t_A 465 ----------------DLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVV----- 522 (590)
T ss_dssp ----------------HHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEE-----
T ss_pred ----------------hhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEE-----
Confidence 0001112237788998764 799999999998876 899999999999999999998
Q ss_pred ecCCCCcCcCCCHHHHHHhhccCCCCCCC-CceEEEEEecC
Q 000114 1688 YDGQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHA 1727 (2158)
Q Consensus 1688 yd~~~~~~~~~s~~~~lQr~GRaGR~g~d-~~G~~iil~~~ 1727 (2158)
+...+.+...|+||+|||||.+.+ +...++++-.-
T Consensus 523 -----~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 523 -----LARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp -----EESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred -----EEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 344566899999999999998742 34445555444
No 106
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.94 E-value=2.3e-27 Score=310.30 Aligned_cols=284 Identities=15% Similarity=0.075 Sum_probs=186.6
Q ss_pred HHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000114 1346 QTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL 1425 (2158)
Q Consensus 1346 Q~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~l 1425 (2158)
|++.+..++.++++++++||||||||.+|.+++++ .+. +++|++|||+||.|+++++.+.++ ..+...
T Consensus 221 ~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------~g~--~vLVl~PTReLA~Qia~~l~~~~g----~~vg~~ 288 (666)
T 3o8b_A 221 DNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------QGY--KVLVLNPSVAATLGFGAYMSKAHG----IDPNIR 288 (666)
T ss_dssp CCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------TTC--CEEEEESCHHHHHHHHHHHHHHHS----CCCEEE
T ss_pred HHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------CCC--eEEEEcchHHHHHHHHHHHHHHhC----CCeeEE
Confidence 33444445556778999999999999999998874 233 899999999999999998886664 356667
Q ss_pred cCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEE
Q 000114 1426 TGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIV 1505 (2158)
Q Consensus 1426 tG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV 1505 (2158)
+|+.. .....+|+|+||+++. +. ....++++++|||||||++.. .+...+.++...... .....++
T Consensus 289 vG~~~----~~~~~~IlV~TPGrLl---~~--~~l~l~~l~~lVlDEAH~l~~----~~~~~l~~Il~~l~~-~~~~lli 354 (666)
T 3o8b_A 289 TGVRT----ITTGAPVTYSTYGKFL---AD--GGCSGGAYDIIICDECHSTDS----TTILGIGTVLDQAET-AGARLVV 354 (666)
T ss_dssp CSSCE----ECCCCSEEEEEHHHHH---HT--TSCCTTSCSEEEETTTTCCSH----HHHHHHHHHHHHTTT-TTCSEEE
T ss_pred ECcEe----ccCCCCEEEECcHHHH---hC--CCcccCcccEEEEccchhcCc----cHHHHHHHHHHhhhh-cCCceEE
Confidence 77654 2346799999999972 22 234577899999999998742 222233333332211 1223478
Q ss_pred EeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChH
Q 000114 1506 ALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRK 1585 (2158)
Q Consensus 1506 ~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~ 1585 (2158)
++|||+++. +......+. .+.........+.. .... ... ...+++||||+|++
T Consensus 355 l~SAT~~~~------i~~~~p~i~-----------~v~~~~~~~i~~~~--~~~~-------l~~-~~~~~vLVFv~Tr~ 407 (666)
T 3o8b_A 355 LATATPPGS------VTVPHPNIE-----------EVALSNTGEIPFYG--KAIP-------IEA-IRGGRHLIFCHSKK 407 (666)
T ss_dssp EEESSCTTC------CCCCCTTEE-----------EEECBSCSSEEETT--EEEC-------GGG-SSSSEEEEECSCHH
T ss_pred EECCCCCcc------cccCCcceE-----------EEeecccchhHHHH--hhhh-------hhh-ccCCcEEEEeCCHH
Confidence 889999863 111110010 11100000000000 0000 011 35788999999999
Q ss_pred HHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEe
Q 000114 1586 YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665 (2158)
Q Consensus 1586 ~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVa 1665 (2158)
.|+.++..|.. .+..+..+||+|++++ |.++..+||||
T Consensus 408 ~ae~la~~L~~-----------------------------------~g~~v~~lHG~l~q~e-------r~~~~~~VLVA 445 (666)
T 3o8b_A 408 KCDELAAKLSG-----------------------------------LGINAVAYYRGLDVSV-------IPTIGDVVVVA 445 (666)
T ss_dssp HHHHHHHHHHT-----------------------------------TTCCEEEECTTSCGGG-------SCSSSCEEEEE
T ss_pred HHHHHHHHHHh-----------------------------------CCCcEEEecCCCCHHH-------HHhCCCcEEEE
Confidence 99999977632 2456899999999886 45677799999
Q ss_pred cCccccccCCCccEEEE-eccee-------ecCCCC---cCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1666 SSSMCWGVPLTAHLVVV-MGTQY-------YDGQEN---AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1666 T~~la~Gvdlp~~~vVI-~gt~~-------yd~~~~---~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
|+++++|||+| +.+|| .|... ||+... ...|.+..+|+||+||||| | ..|. +.|+...+
T Consensus 446 TdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~lvt~~e 515 (666)
T 3o8b_A 446 TDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YRFVTPGE 515 (666)
T ss_dssp CTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EEESCCCC
T ss_pred CChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EEEEecch
Confidence 99999999998 55555 33221 222211 1168899999999999999 5 6788 77776654
No 107
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.92 E-value=2.8e-24 Score=299.71 Aligned_cols=324 Identities=18% Similarity=0.177 Sum_probs=209.3
Q ss_pred CCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 494 TQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
.+|+|+|.+++..++.. ..++|+++|||+|||.+++..+...+..+. ..+++||+|+ +|+.|+..++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~---------~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA---------AERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS---------CCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC---------CCeEEEEeCH-HHHHHHHHHHHH
Confidence 47999999999988864 457999999999999999888877765542 2379999999 999999999987
Q ss_pred hcccCCcEEEEEeCCCccCH-----hhhccccEEEcchhHHHHHHhccC--CCccccccceEEeecccccccCC--hhhH
Q 000114 573 RLQMYDVKVRELSGDQTLTR-----QQIEETQIIVTTPEKWDIITRKSG--DRTYTQLVKLLIIDEIHLLHDNR--GPVL 643 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~-----~~~~~~~IiV~TPekld~l~r~~~--~~~~l~~v~lIIiDEaH~l~d~r--g~~l 643 (2158)
.+ ++++..++|+..... ......+|+|+|++.+ .+... .......+++|||||||++.... ....
T Consensus 222 ~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L---~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 222 RF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFA---RRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHH---HTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred Hh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHH---hhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 66 566777766442211 1134679999999964 22211 11223468999999999996522 1111
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHh---cccc-------------------------C-------
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLR---VNLE-------------------------K------- 686 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~---~~~~-------------------------~------- 686 (2158)
..++..+ .....++++||||+.. ..++...++ ...- .
T Consensus 296 ~~~l~~L------~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~ 369 (968)
T 3dmq_A 296 YQAIEQL------AEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDE 369 (968)
T ss_dssp HHHHHHH------HTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGG
T ss_pred HHHHHHH------hhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHH
Confidence 2222222 1234579999999632 222211111 0000 0
Q ss_pred --------------------------------------------ceEEecCCcccc---ccee-EEEeeccCC-------
Q 000114 687 --------------------------------------------GLFYFDNSYRPV---PLSQ-QYIGIQVKK------- 711 (2158)
Q Consensus 687 --------------------------------------------~~~~f~~~~rpv---~l~~-~~~~~~~~~------- 711 (2158)
+...+......+ |... ..+.+....
T Consensus 370 ~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~ 449 (968)
T 3dmq_A 370 LNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIK 449 (968)
T ss_dssp TTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHH
Confidence 000000000000 0000 000000000
Q ss_pred -------------------------------------hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHH
Q 000114 712 -------------------------------------PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754 (2158)
Q Consensus 712 -------------------------------------~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~ 754 (2158)
...+.. .+. .+.....++++||||+++..+..++..|.
T Consensus 450 ~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~----~L~-~ll~~~~~~k~iVF~~~~~~~~~l~~~L~ 524 (968)
T 3dmq_A 450 VSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVE----WLM-GYLTSHRSQKVLVICAKAATALQLEQVLR 524 (968)
T ss_dssp HHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHH----HHH-HHHHHTSSSCCCEECSSTHHHHHHHHHHH
T ss_pred HHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHH----HHH-HHHHhCCCCCEEEEeCcHHHHHHHHHHHH
Confidence 000111 112 22233457899999999999999998886
Q ss_pred HHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCC--ceEEEechhhhh
Q 000114 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH--VQVLVSTATLAW 832 (2158)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~--i~VLVaT~tla~ 832 (2158)
.. ....+..+||+|+..+|..+++.|++|. ++|||||+++++
T Consensus 525 ~~------------------------------------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~ 568 (968)
T 3dmq_A 525 ER------------------------------------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSE 568 (968)
T ss_dssp TT------------------------------------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTC
T ss_pred HH------------------------------------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhc
Confidence 42 1234778899999999999999999998 999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 833 GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
|+|+|++++||+ ||++. ++..|.||+||+||.|.......+.+.....
T Consensus 569 GlDl~~~~~VI~----~d~p~------~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 569 GRNFQFASHMVM----FDLPF------NPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp SSCCTTCCEEEC----SSCCS------SHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred CCCcccCcEEEE----ecCCC------CHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 999999999999 66653 7789999999999998554434444444443
No 108
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.91 E-value=4.2e-23 Score=287.95 Aligned_cols=340 Identities=14% Similarity=0.140 Sum_probs=216.2
Q ss_pred CCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1340 KHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
..|+|+|.+++..++.. ..++|++++||+|||+++..++...+.. ...+ +++||+|+ +|+.|+..++.+.|
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-g~~~--rvLIVvP~-sLl~Qw~~E~~~~f---- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-GAAE--RVLIIVPE-TLQHQWLVEMLRRF---- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-SSCC--CEEEECCT-TTHHHHHHHHHHHS----
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-CCCC--eEEEEeCH-HHHHHHHHHHHHHh----
Confidence 37999999999988763 4579999999999999997777766655 3334 89999999 99999999998777
Q ss_pred CcEEEEEcCCcchh-----hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHH
Q 000114 1419 GMRVVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (2158)
+.++..++|+.... ...+...+|+|+|++.+....... ......++++|||||||++....... ......+..
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~-~~l~~~~~dlVIvDEAH~~kn~~~~~-s~~~~~l~~ 301 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRL-EHLCEAEWDLLVVDEAHHLVWSEDAP-SREYQAIEQ 301 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTT-HHHHTSCCCEEEECCSSCCCCBTTBC-CHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHH-HHhhhcCCCEEEehhhHhhcCCCCcc-hHHHHHHHH
Confidence 45666776654322 123445699999998764211110 11224578999999999997543221 001122222
Q ss_pred HHhhcCCCceEEEeccCCCC--hHHH---HHHhccCCC--------------------------------------c---
Q 000114 1494 IASQVENKIRIVALSTSLAN--AKDL---GEWIGATSH--------------------------------------G--- 1527 (2158)
Q Consensus 1494 i~~~~~~~~riV~lSATl~n--~~dl---~~wl~~~~~--------------------------------------~--- 1527 (2158)
+. ....++++||||+.+ ..++ ..++..... .
T Consensus 302 L~---~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~ 378 (968)
T 3dmq_A 302 LA---EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG 378 (968)
T ss_dssp HH---TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC
T ss_pred Hh---hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence 32 235579999999843 2211 111110000 0
Q ss_pred --------------------------------------eEec-CCCCccc---ccEEEEecccccchHHHH---------
Q 000114 1528 --------------------------------------LFNF-PPGVRPV---PLEIHIQGVDITNFEARM--------- 1556 (2158)
Q Consensus 1528 --------------------------------------i~~f-~~~~rpv---~l~~~i~~~~~~~~~~~~--------- 1556 (2158)
++.. ....... .........+. .+....
T Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~-~~~~~~~~~~~~~~~ 457 (968)
T 3dmq_A 379 EQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPT-QYQTAIKVSGIMGAR 457 (968)
T ss_dssp TTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCH-HHHHHHHHHHHTTCC
T ss_pred chhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCH-HHHHHHHHHhhhhhh
Confidence 0000 0000000 00000000000 000000
Q ss_pred --------------------------HhcChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccc
Q 000114 1557 --------------------------QAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2158)
Q Consensus 1557 --------------------------~~~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~ 1608 (2158)
..........+...+ .+++++||||+++..+..++..|.
T Consensus 458 ~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~------------- 524 (968)
T 3dmq_A 458 KSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLR------------- 524 (968)
T ss_dssp SSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHH-------------
T ss_pred hhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHH-------------
Confidence 000011222222222 467899999999999988886552
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCC--ceEEEecCccccccCCCccEEEEecce
Q 000114 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGK--IKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2158)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~--i~VLVaT~~la~Gvdlp~~~vVI~gt~ 1686 (2158)
...+..+..+||+|+..+|..+++.|++|+ ++|||||+++++|+|+|++.+||
T Consensus 525 ---------------------~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI---- 579 (968)
T 3dmq_A 525 ---------------------EREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMV---- 579 (968)
T ss_dssp ---------------------TTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEE----
T ss_pred ---------------------HHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEE----
Confidence 123566899999999999999999999998 99999999999999999999998
Q ss_pred eecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC-hHHHHHHHh
Q 000114 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFL 1737 (2158)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~-~~~~~~k~l 1737 (2158)
+++.|.++..|.||+||+||.|..+...++.+.... ..+.+.+.+
T Consensus 580 ------~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 580 ------MFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp ------CSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred ------EecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 667788999999999999999855555555555444 334344444
No 109
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.91 E-value=5.9e-23 Score=269.85 Aligned_cols=324 Identities=16% Similarity=0.145 Sum_probs=204.8
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
..|+|+|.+++..+. ..+.++|+++|||+|||++++..+....... ...++|||+| .+|+.|+.+++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~---------~~~~~LIv~P-~~l~~qw~~e~ 105 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN---------ELTPSLVICP-LSVLKNWEEEL 105 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT---------CCSSEEEEEC-STTHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC---------CCCCEEEEcc-HHHHHHHHHHH
Confidence 379999999997654 4456799999999999999866555544322 1237999999 67999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART 650 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~ 650 (2158)
.+.+. ++++..++|+... ......+|+|+||+.+..... .....+++||+||||.+.+....... .+
T Consensus 106 ~~~~~--~~~v~~~~g~~~~--~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~~~~~-~l--- 172 (500)
T 1z63_A 106 SKFAP--HLRFAVFHEDRSK--IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFK-AV--- 172 (500)
T ss_dssp HHHCT--TSCEEECSSSTTS--CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHHH-HH---
T ss_pred HHHCC--CceEEEEecCchh--ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhHHHHH-HH---
Confidence 98764 4577777776532 234578999999997621111 11234789999999999653322222 11
Q ss_pred HHHHhhccccccEEEEccccC--ChHHHHH---HHhccc-----------------------------cCceEEecCCc-
Q 000114 651 VRQIETTKEHIRLVGLSATLP--NYEDVAL---FLRVNL-----------------------------EKGLFYFDNSY- 695 (2158)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlp--n~~dv~~---~l~~~~-----------------------------~~~~~~f~~~~- 695 (2158)
... ...+.++||||+. +..++.. |+.... -.+........
T Consensus 173 ----~~l-~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~ 247 (500)
T 1z63_A 173 ----KEL-KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYD 247 (500)
T ss_dssp ----HTS-CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTC
T ss_pred ----Hhh-ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccc
Confidence 112 2456799999963 2333322 221100 00111111000
Q ss_pred ----cccccee-EEEeeccCChhH-HHHH---------------------------hh----------------------
Q 000114 696 ----RPVPLSQ-QYIGIQVKKPLQ-RFQL---------------------------MN---------------------- 720 (2158)
Q Consensus 696 ----rpv~l~~-~~~~~~~~~~~~-~~~~---------------------------l~---------------------- 720 (2158)
...|-.. ..+.+....... .+.. +.
T Consensus 248 ~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~ 327 (500)
T 1z63_A 248 KAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKM 327 (500)
T ss_dssp HHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHH
T ss_pred cchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhH
Confidence 0111111 111111110000 0000 00
Q ss_pred HHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEE
Q 000114 721 DLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (2158)
Q Consensus 721 ~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~ 799 (2158)
..+.+.+.+.. .+.++||||+++..+..++..|.... ...+..
T Consensus 328 ~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~------------------------------------~~~~~~ 371 (500)
T 1z63_A 328 IRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL------------------------------------NTEVPF 371 (500)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH------------------------------------TCCCCE
T ss_pred HHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh------------------------------------CCCeEE
Confidence 01112222222 36799999999999988888876531 133567
Q ss_pred ecCCCCHHHHHHHHHHHhCC-Cce-EEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC
Q 000114 800 HHAGMTRGDRQLVEDLFGDG-HVQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2158)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g-~i~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2158)
+||+|+..+|..+++.|++| ..+ +||||.++++|+|+|++++||+++.++++. .+.||+||++|.|..
T Consensus 372 ~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~----------~~~Q~~gR~~R~Gq~ 441 (500)
T 1z63_A 372 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPA----------VEDQATDRVYRIGQT 441 (500)
T ss_dssp EETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC-------------CHHHHTTTTTTTT
T ss_pred EECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcc----------hHHHHHHHHHHcCCC
Confidence 79999999999999999998 565 799999999999999999999966666655 699999999999977
Q ss_pred CccEEEEEcCCCcH
Q 000114 878 SYGEGIIITGHSEL 891 (2158)
Q Consensus 878 ~~G~~iil~~~~~~ 891 (2158)
+...++.++..+..
T Consensus 442 ~~v~v~~lv~~~ti 455 (500)
T 1z63_A 442 RNVIVHKLISVGTL 455 (500)
T ss_dssp SCEEEEEEEETTSH
T ss_pred CeeEEEEEEeCCCH
Confidence 66666767666544
No 110
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.91 E-value=2.8e-23 Score=272.89 Aligned_cols=322 Identities=16% Similarity=0.168 Sum_probs=204.2
Q ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
..++|+|.+++..+. ..+.++++++|||+|||+++...+. .+......+ +++||+| .+|+.|+.+++++ +..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~~~~~--~~LIv~P-~~l~~qw~~e~~~-~~~ 110 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKENELT--PSLVICP-LSVLKNWEEELSK-FAP 110 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHTTCCS--SEEEEEC-STTHHHHHHHHHH-HCT
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhcCCCC--CEEEEcc-HHHHHHHHHHHHH-HCC
Confidence 479999999987653 4566799999999999999855444 444323334 7999999 5699999999984 443
Q ss_pred CCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHh
Q 000114 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~ 1496 (2158)
+.++..++|+... ......+|+|+|++.+..... .....+++||+||||.+.+.....+. .+ .
T Consensus 111 --~~~v~~~~g~~~~--~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~~~~~----~l----~ 173 (500)
T 1z63_A 111 --HLRFAVFHEDRSK--IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFK----AV----K 173 (500)
T ss_dssp --TSCEEECSSSTTS--CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHHH----HH----H
T ss_pred --CceEEEEecCchh--ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhHHHHH----HH----H
Confidence 4678888886532 334567999999998753322 12346899999999999754321111 11 1
Q ss_pred hcCCCceEEEeccCCCC--hHHHH---HHhccCC-------------------------------CceEecCC-C-----
Q 000114 1497 QVENKIRIVALSTSLAN--AKDLG---EWIGATS-------------------------------HGLFNFPP-G----- 1534 (2158)
Q Consensus 1497 ~~~~~~riV~lSATl~n--~~dl~---~wl~~~~-------------------------------~~i~~f~~-~----- 1534 (2158)
.+. ..+.++||||+.. ..++. .|+.... ..++.... .
T Consensus 174 ~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~ 252 (500)
T 1z63_A 174 ELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIIN 252 (500)
T ss_dssp TSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHT
T ss_pred hhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhh
Confidence 222 4577999999843 33332 2221110 00110000 0
Q ss_pred CcccccEEEEecccccc-----hHHHHHh---------------------------cC--------------hH----HH
Q 000114 1535 VRPVPLEIHIQGVDITN-----FEARMQA---------------------------MT--------------KP----TF 1564 (2158)
Q Consensus 1535 ~rpv~l~~~i~~~~~~~-----~~~~~~~---------------------------~~--------------k~----~~ 1564 (2158)
.-|......+ ..+... +...... .. .. ..
T Consensus 253 ~lp~~~~~~v-~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~ 331 (500)
T 1z63_A 253 DLPDKIETNV-YCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTM 331 (500)
T ss_dssp TSCSEEEEEE-EECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHH
T ss_pred cCCCCeEEEE-EcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHH
Confidence 0011111111 111100 0000000 00 00 11
Q ss_pred HHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCC
Q 000114 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (2158)
Q Consensus 1565 ~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~ 1644 (2158)
..+.....++.++||||.++..+..++..| ....+..+..+||+++
T Consensus 332 ~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l----------------------------------~~~~~~~~~~~~g~~~ 377 (500)
T 1z63_A 332 EIIEEALDEGDKIAIFTQFVDMGKIIRNII----------------------------------EKELNTEVPFLYGELS 377 (500)
T ss_dssp HHHHHHHTTTCCEEEECSCHHHHHHHHHHH----------------------------------HHHHTCCCCEEETTSC
T ss_pred HHHHHHHccCCcEEEEEehHHHHHHHHHHH----------------------------------HHhhCCCeEEEECCCC
Confidence 222233356789999999999887777544 2223566889999999
Q ss_pred HHHHHHHHHHHHcC-Cce-EEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEE
Q 000114 1645 KTDQEVVSALFEAG-KIK-VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2158)
Q Consensus 1645 ~~dR~~v~~~F~~g-~i~-VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~i 1722 (2158)
..+|..+++.|++| ..+ +|+||+++++|+|+|++.+|| +++.+.++..|.||+||++|.|..+...++
T Consensus 378 ~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi----------~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 378 KKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----------HFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE----------ESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE----------EeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 99999999999998 565 899999999999999988888 455677899999999999999977777777
Q ss_pred EEecCCh
Q 000114 1723 ILCHAPR 1729 (2158)
Q Consensus 1723 il~~~~~ 1729 (2158)
.++....
T Consensus 448 ~lv~~~t 454 (500)
T 1z63_A 448 KLISVGT 454 (500)
T ss_dssp EEEETTS
T ss_pred EEEeCCC
Confidence 7766553
No 111
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=252.18 Aligned_cols=227 Identities=18% Similarity=0.190 Sum_probs=142.7
Q ss_pred EEecccccCCCcccccccccccCCCCCCCCCcCCCCCCCccc------------ccChhHHHHHhc-CCCCCCHHHHHHH
Q 000114 1284 RVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVT------------ALRNPLYEALYQ-GFKHFNPIQTQVF 1350 (2158)
Q Consensus 1284 ~~vSd~wlg~e~~~~i~~~~l~lp~~~~~~t~lldl~p~~~~------------~L~~~~~~~l~~-gf~~~~~iQ~q~~ 1350 (2158)
+..||.|.+.+....-+..++..|+..........++..... .+.....+.+.. ||..|+|+|.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i 85 (262)
T 3ly5_A 6 HHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSI 85 (262)
T ss_dssp ----------------------------------------CCBSGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHH
T ss_pred ccccccCccchhHHHHhhcccCCCccccccccCCCCccccccccccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHH
Confidence 346899999887666666666555543333322222211111 155566666665 7999999999999
Q ss_pred HHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc--CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCC
Q 000114 1351 TVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGE 1428 (2158)
Q Consensus 1351 ~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~--~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~ 1428 (2158)
+.++.+ .|++++||||||||++|++|+++.+.... ...+.++||++||++|+.|+++.+++ +....+..+..++|+
T Consensus 86 ~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~g~ 163 (262)
T 3ly5_A 86 RPLLEG-RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKE-LMTHHVHTYGLIMGG 163 (262)
T ss_dssp HHHHHT-CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH-HTTTCCSCEEEECSS
T ss_pred HHHhCC-CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHH-HHhhcCceEEEEECC
Confidence 999986 55999999999999999999999887521 11234899999999999999999995 444458889999998
Q ss_pred cchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEE
Q 000114 1429 TAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIV 1505 (2158)
Q Consensus 1429 ~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV 1505 (2158)
...... ....++|+|+||++|..++++.. ...+++++++|+||||++.+++ +...+..+...++...|++
T Consensus 164 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~-~~~~~~l~~lViDEah~l~~~~------~~~~l~~i~~~~~~~~q~l 236 (262)
T 3ly5_A 164 SNRSAEAQKLGNGINIIVATPGRLLDHMQNTP-GFMYKNLQCLVIDEADRILDVG------FEEELKQIIKLLPTRRQTM 236 (262)
T ss_dssp SCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT-TCCCTTCCEEEECSHHHHHHTT------CHHHHHHHHHHSCSSSEEE
T ss_pred CCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC-CcccccCCEEEEcChHHHhhhh------HHHHHHHHHHhCCCCCeEE
Confidence 765422 22457999999999988877643 2357889999999999988653 2233444445557789999
Q ss_pred EeccCCCC-hHHHHH
Q 000114 1506 ALSTSLAN-AKDLGE 1519 (2158)
Q Consensus 1506 ~lSATl~n-~~dl~~ 1519 (2158)
+||||+++ .++++.
T Consensus 237 ~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 237 LFSATQTRKVEDLAR 251 (262)
T ss_dssp EECSSCCHHHHHHHH
T ss_pred EEEecCCHHHHHHHH
Confidence 99999986 344444
No 112
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.6e-23 Score=250.55 Aligned_cols=187 Identities=19% Similarity=0.231 Sum_probs=149.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+++.+...+ .||.+|+++|.++++.++.+ .|++++||||||||++|++|+++.+...... ...+.++||++||
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~----~~~~~~~lil~Pt 135 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEG-RDLLAAAKTGSGKTLAFLIPAVELIVKLRFM----PRNGTGVLILSPT 135 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHT-CCCEECCCTTSCHHHHHHHHHHHHHHHTTCC----GGGCCCEEEECSS
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CcEEEEccCCCCchHHHHHHHHHHHHhcccc----ccCCceEEEEeCC
Confidence 456666666 79999999999999999987 5599999999999999999999998764321 1245689999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++||.|+++.+++++...++.+..++|+....... ..+++|+|+||++|....+.... ..+.++++|||||||++.
T Consensus 136 ~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~-~~~~~l~~lViDEah~l~ 214 (262)
T 3ly5_A 136 RELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPG-FMYKNLQCLVIDEADRIL 214 (262)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTT-CCCTTCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCC-cccccCCEEEEcChHHHh
Confidence 99999999999999988899999999988765433 24689999999998555554432 357789999999999988
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
+ ++++.++.++.++ +..+|+++||||+| .++..+.+..
T Consensus 215 ~~~~~~~l~~i~~~~-------~~~~q~l~~SAT~~--~~v~~~~~~~ 253 (262)
T 3ly5_A 215 DVGFEEELKQIIKLL-------PTRRQTMLFSATQT--RKVEDLARIS 253 (262)
T ss_dssp HTTCHHHHHHHHHHS-------CSSSEEEEECSSCC--HHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhC-------CCCCeEEEEEecCC--HHHHHHHHHH
Confidence 7 5777777765543 56789999999998 4555555443
No 113
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.90 E-value=7.3e-23 Score=249.43 Aligned_cols=195 Identities=16% Similarity=0.265 Sum_probs=152.6
Q ss_pred CCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEE
Q 000114 1318 DLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVY 1395 (2158)
Q Consensus 1318 dl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~ 1395 (2158)
+...+.-..|.....+.+.. ||..|+|+|.++++.++.+ +.|++++||||||||++|++|++.++... ..++++||
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--~~~~~~li 167 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLC 167 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEE
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--CCCceEEE
Confidence 33444444567777777776 8999999999999999986 47799999999999999999999988763 23348999
Q ss_pred EcccHHHHHHHHHHHHHHhcCC-CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccc
Q 000114 1396 IAPLEALAKERYRDWEIKFGQG-LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1396 IaP~raLa~q~~~~~~~~f~~~-~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
++||++||.|+++.++ .++.. .++++..+.|+..........++|+|+||+++..++.+. ....++++++|||||||
T Consensus 168 l~PtreLa~Q~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 168 LSPTYELALQTGKVIE-QMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp ECSSHHHHHHHHHHHH-HHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEETTHH
T ss_pred EcCcHHHHHHHHHHHH-HHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEeCHH
Confidence 9999999999999998 45443 478888888887765555566799999999998887653 23357899999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1475 ~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
++.+..| +...+..+...++.+.|++++|||+++ ...++..+
T Consensus 246 ~l~~~~~-----~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 246 VMIATQG-----HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp HHHHSTT-----HHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred HHhhccC-----cHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence 9886433 334455556666788999999999987 34455444
No 114
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.89 E-value=3.2e-22 Score=275.78 Aligned_cols=351 Identities=13% Similarity=0.140 Sum_probs=196.0
Q ss_pred CCCHHHHHHHHHHHcC-------------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 495 QLNRVQSRVYKSALSS-------------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-------------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
.|+|+|.+|++.++.. +.+.++++|||||||+++ +++++.+.... ...++|||+|+++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~--------~~~rvLvlvpr~e 341 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD--------FIDKVFFVVDRKD 341 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT--------TCCEEEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC--------CCceEEEEeCcHH
Confidence 6999999999998762 356999999999999998 66666554321 2348999999999
Q ss_pred HHHHHHHHHHhhcccCCcEEEEEeCCCccCH--hhh--ccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc
Q 000114 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTR--QQI--EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 562 La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~--~~~--~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
|+.|+.+.|..+... . +.|..+... ..+ ...+|+|+||+++..+.+.......+....+||+||||+...
T Consensus 342 L~~Q~~~~f~~f~~~-~-----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPD-S-----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp CCHHHHHHHHTTSTT-C-----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHhccc-c-----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 999999999885432 1 122222111 112 368999999999854443322122455778999999998642
Q ss_pred CChhhHHHHHHHHHHHHhhccccccEEEEccccCChH------HHHHHHhccccCceEEecC-----CcccccceeEEEe
Q 000114 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE------DVALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIG 706 (2158)
Q Consensus 638 ~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~------dv~~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~ 706 (2158)
|..+..+. ...++.+++|||||+.... ....+++.. ++.+.- .-.-+|....+..
T Consensus 416 --~~~~~~I~--------~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~----i~~Y~l~~AI~dg~l~p~~v~y~~ 481 (1038)
T 2w00_A 416 --GEAQKNLK--------KKFKRYYQFGFTGTPIFPENALGSETTASVFGRE----LHSYVITDAIRDEKVLKFKVDYND 481 (1038)
T ss_dssp --HHHHHHHH--------HHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSE----EEEECHHHHHHHTSSCCEEEEECC
T ss_pred --hHHHHHHH--------HhCCcccEEEEeCCccccccchhhhHHHHHhCCe----eEeecHHHHHhCCCcCCeEEEEEe
Confidence 22222221 1234689999999976432 334444321 111100 0001122212221
Q ss_pred ecc-------C-C--------------hhHHHHHhhHHHHHHHHHHh-------CCCeEEEEecChHHHHHHHHHHHHHh
Q 000114 707 IQV-------K-K--------------PLQRFQLMNDLCYEKVVAVA-------GKHQVLIFVHSRKETAKTARAIRDTA 757 (2158)
Q Consensus 707 ~~~-------~-~--------------~~~~~~~l~~~~~~~i~~~~-------~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (2158)
+.. . . ...+...+...+........ .+.++||||+|+..|..++..|...+
T Consensus 482 v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 482 VRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhh
Confidence 100 0 0 00111111121222222221 24589999999999999999998875
Q ss_pred hcc-------cccc--cccccCchhHHH-----HHhh--hhccCcc----hhhhhcc-----CCeEEecC-CCCHHHHHH
Q 000114 758 LEN-------DTLG--RFLKEDSVSREI-----LQSH--TDMVKSN----DLKDLLP-----YGFAIHHA-GMTRGDRQL 811 (2158)
Q Consensus 758 ~~~-------~~~~--~~~~~~~~~~~~-----l~~~--~~~~~~~----~l~~ll~-----~gv~~hHa-gl~~~~R~~ 811 (2158)
... ..+. ..+.. ..+.+. +..+ .....+. .+...+. +|-.+.+. +-....|..
T Consensus 562 ~~~~~~~~~~~~~k~avv~s~-~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~ 640 (1038)
T 2w00_A 562 EEAANKSATYKPLRIATIFSF-AANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRD 640 (1038)
T ss_dssp HHHTTTSSSCCCCCEEEECCC-CC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHH
T ss_pred hhhcccccccccCcEEEEEeC-CCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 210 0000 00000 000000 0000 0000000 0000000 00000000 001235899
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC--CccEEEEEc
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD--SYGEGIIIT 886 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d--~~G~~iil~ 886 (2158)
+.+.|++|.++|||+|+.+.+|+|+|.+.+++ +|.+. +...|+||+||+||.+.+ ..|.++-+.
T Consensus 641 i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly-----lDkpl------~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 641 LAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF-----VDKNL------RYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp HHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE-----EESCC------CHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred HHHHHHcCCCeEEEEcchHHhCcCcccccEEE-----EccCC------CccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 99999999999999999999999999997655 55443 667899999999998753 234444443
No 115
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.89 E-value=6.8e-23 Score=242.50 Aligned_cols=188 Identities=19% Similarity=0.198 Sum_probs=148.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.+++.+...+ .||.+|+++|.++++.++.+. +++++||||||||++|++|++..+...... ....+.++||++|
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~-~~l~~apTGsGKT~~~~l~~l~~l~~~~~~---~~~~~~~~lil~P 110 (242)
T 3fe2_A 35 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGL-DMVGVAQTGSGKTLSYLLPAIVHINHQPFL---ERGDGPICLVLAP 110 (242)
T ss_dssp TCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHHHHHHTSCCC---CTTCCCSEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCcCHHHHHHHHHHHHHHHhcccc---ccCCCCEEEEEeC
Confidence 3567776666 689999999999999988774 599999999999999999999998754321 1124568999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
|++|+.|+++.+.+++...++++..++|+....... ..+++|+|+||+++..+.+... ..+.++++|||||||++
T Consensus 111 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l 188 (242)
T 3fe2_A 111 TRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK--TNLRRTTYLVLDEADRM 188 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS--CCCTTCCEEEETTHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CCcccccEEEEeCHHHH
Confidence 999999999999998888899999999988765432 3468999999999844433332 35788999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
.+ ++++.++.++.+ .++..|++++|||+|+ ++..+....
T Consensus 189 ~~~~~~~~~~~i~~~-------~~~~~q~~~~SAT~~~--~~~~~~~~~ 228 (242)
T 3fe2_A 189 LDMGFEPQIRKIVDQ-------IRPDRQTLMWSATWPK--EVRQLAEDF 228 (242)
T ss_dssp HHTTCHHHHHHHHTT-------SCSSCEEEEEESCCCH--HHHHHHHHH
T ss_pred hhhCcHHHHHHHHHh-------CCccceEEEEEeecCH--HHHHHHHHH
Confidence 87 577777766543 3568899999999984 455555543
No 116
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.89 E-value=7.7e-23 Score=249.22 Aligned_cols=185 Identities=18% Similarity=0.241 Sum_probs=145.4
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia 557 (2158)
.|++.+...+ .||.+|+++|.++++.++.+ +.|++++||||||||++|++|+++.+.... .++++||++
T Consensus 98 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~--------~~~~~lil~ 169 (300)
T 3fmo_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLS 169 (300)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC--------CCceEEEEc
Confidence 3567766666 79999999999999999887 467999999999999999999999875432 345899999
Q ss_pred ccHHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccc
Q 000114 558 PMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 558 P~kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
||++||.|+++.+..+.... ++.+..+.|+..........++|+|+||+++ +.+.+.. ...++++++|||||||++
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~--~~~l~~l~~lVlDEad~l 247 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVM 247 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTC--CCCGGGCSEEEETTHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcC--CCChhhceEEEEeCHHHH
Confidence 99999999999999887654 6889999998887766667889999999997 4443322 245789999999999998
Q ss_pred ccC--ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccc
Q 000114 636 HDN--RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL 684 (2158)
Q Consensus 636 ~d~--rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~ 684 (2158)
.+. ++..+..+ ....+..+|++++|||+++ ++..+.....
T Consensus 248 ~~~~~~~~~~~~i-------~~~~~~~~q~i~~SAT~~~--~v~~~a~~~l 289 (300)
T 3fmo_B 248 IATQGHQDQSIRI-------QRMLPRNCQMLLFSATFED--SVWKFAQKVV 289 (300)
T ss_dssp HHSTTHHHHHHHH-------HTTSCTTCEEEEEESCCCH--HHHHHHHHHS
T ss_pred hhccCcHHHHHHH-------HHhCCCCCEEEEEeccCCH--HHHHHHHHHC
Confidence 762 33333322 2334668999999999984 5555555443
No 117
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.89 E-value=4.5e-21 Score=244.88 Aligned_cols=347 Identities=16% Similarity=0.176 Sum_probs=232.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|...--.+..| . |..+.||+|||++|.+|++-....+ ..+.+++|+..||.+-++.+..++
T Consensus 75 r~~dvQligg~~L~~G-~--iaEM~TGEGKTLva~lp~~lnAL~G-----------~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 75 RPFDVQVMGGIALHEG-K--VAEMKTGEGKTLAATMPIYLNALIG-----------KGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp CCCHHHHHHHHHHHTT-C--EEECCTTSCHHHHTHHHHHHHHTTS-----------SCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCC-C--hhhccCCCCccHHHHHHHHHHHhcC-----------CceEEEeccHHHHHhHHHHHHHHH
Confidence 5788898877755544 2 8899999999999999987554332 358999999999999999999999
Q ss_pred ccCCcEEEEEeCC--------------------------------------------------Cc-cCHhhhccccEEEc
Q 000114 575 QMYDVKVRELSGD--------------------------------------------------QT-LTRQQIEETQIIVT 603 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd--------------------------------------------------~~-~~~~~~~~~~IiV~ 603 (2158)
..+|++|+.++++ .+ ..++..-.++|+.+
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYg 220 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYG 220 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEc
Confidence 9999999999872 11 12333457899999
Q ss_pred chhHH--HHHHhcc---CCCccccccceEEeecccccc-c-CChhh-----------HHHHHHHH---------------
Q 000114 604 TPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGPV-----------LESIVART--------------- 650 (2158)
Q Consensus 604 TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l~-d-~rg~~-----------le~iv~r~--------------- 650 (2158)
|..-+ |.|.-+. .+........+.||||+|.++ | .|.|. +-..+.++
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 99886 7766543 223345668899999999652 2 12111 00000000
Q ss_pred --------------------------------------HHHHhhc-----------------------------------
Q 000114 651 --------------------------------------VRQIETT----------------------------------- 657 (2158)
Q Consensus 651 --------------------------------------~~~~~~~----------------------------------- 657 (2158)
++.....
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 0000000
Q ss_pred --------------------------cccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeE--EEeecc
Q 000114 658 --------------------------KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQV 709 (2158)
Q Consensus 658 --------------------------~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~--~~~~~~ 709 (2158)
..-.++.|||+|+.. +-..|.... .-. +...+..+|+.-... .+..
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~t--e~~Ef~~iY-~l~-vv~IPtnkp~~R~d~~d~vy~-- 454 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKT--EESEFVQVY-GME-VVVIPTHKPMIRKDHDDLVFR-- 454 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGG--GHHHHHHHS-CCC-EEECCCSSCCCCEECCCEEES--
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCch--HHHHHHHHh-CCe-EEEECCCCCcceeecCcEEEe--
Confidence 001278999999874 233443332 222 333455566432221 1111
Q ss_pred CChhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcch
Q 000114 710 KKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2158)
Q Consensus 710 ~~~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 788 (2158)
....+...+.. .+.+. ..+.|+||||+|++.++.++..|...++.
T Consensus 455 -t~~eK~~al~~----~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~----------------------------- 500 (822)
T 3jux_A 455 -TQKEKYEKIVE----EIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIP----------------------------- 500 (822)
T ss_dssp -SHHHHHHHHHH----HHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCC-----------------------------
T ss_pred -cHHHHHHHHHH----HHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCC-----------------------------
Confidence 22233333332 23322 24789999999999999999999876543
Q ss_pred hhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCC--------ceEEEEecccccCCCCCccccCC
Q 000114 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP--------AHTVIIKGTQIYNPEKGAWTELS 860 (2158)
Q Consensus 789 l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP--------~v~vVI~~~~~yd~~~g~~~~~s 860 (2158)
...+||++...+|..+...|+.| .|+|||++++||+|++ +..+||+ |+.+. |
T Consensus 501 --------~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn----te~Pe------s 560 (822)
T 3jux_A 501 --------HQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG----TERHE------S 560 (822)
T ss_dssp --------CEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE----SSCCS------S
T ss_pred --------EEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe----cCCCC------C
Confidence 34569998777777777778777 6999999999999998 6679999 66655 7
Q ss_pred HHHHHHhhcccCCCCCCCccEEEEEcCCCcH-------HHHHHh-----hcCCCcccchhhHhhHHHHH
Q 000114 861 PLDIMQMLGRAGRPQYDSYGEGIIITGHSEL-------RYYLSL-----MNQQLPIESQFVSKLADQLN 917 (2158)
Q Consensus 861 ~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~-------~~y~~l-----l~~~~pieS~l~~~l~d~ln 917 (2158)
...|.||+||+||.| ..|.++.+++..+. +....+ +....||++.+.++..++..
T Consensus 561 ~r~y~qriGRTGRqG--~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~AQ 627 (822)
T 3jux_A 561 RRIDNQLRGRAGRQG--DPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIENIQ 627 (822)
T ss_dssp HHHHHHHHTTSSCSS--CCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHHHHHH
T ss_pred HHHHHHhhCccccCC--CCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCCceeccHHHHHHHHHHH
Confidence 889999999999988 77999998887652 122222 24567999988887655443
No 118
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=241.72 Aligned_cols=183 Identities=20% Similarity=0.229 Sum_probs=145.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++...+ .||..|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 50 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~il~~l~~~~--------~~~~~lil~Pt 120 (249)
T 3ber_A 50 VTDVLCEACDQLGWTKPTKIQIEAIPLALQG-RDIIGLAETGSGKTGAFALPILNALLETP--------QRLFALVLTPT 120 (249)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHSC--------CSSCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEEcCCCCCchhHhHHHHHHHHhcCC--------CCceEEEEeCC
Confidence 577777777 78999999999999998877 45999999999999999999999887642 24589999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+.|+++.++++....++++..++|+.....+. ..+++|+|+||+++....+.... ..+.++++||+||||++.
T Consensus 121 r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 121 RELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKG-FNLRALKYLVMDEADRIL 199 (249)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTT-CCCTTCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCC-cCccccCEEEEcChhhhh
Confidence 99999999999998888889999999987654332 35789999999998444333221 346789999999999887
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
+ .++..+..++. ..+...|++++|||+++ ++..+....
T Consensus 200 ~~~~~~~l~~i~~-------~~~~~~~~l~~SAT~~~--~v~~~~~~~ 238 (249)
T 3ber_A 200 NMDFETEVDKILK-------VIPRDRKTFLFSATMTK--KVQKLQRAA 238 (249)
T ss_dssp HTTCHHHHHHHHH-------SSCSSSEEEEEESSCCH--HHHHHHHHH
T ss_pred ccChHHHHHHHHH-------hCCCCCeEEEEeccCCH--HHHHHHHHH
Confidence 6 56666665543 23567899999999983 455555443
No 119
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=236.32 Aligned_cols=193 Identities=19% Similarity=0.226 Sum_probs=141.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.+++.+.+.+ .||.+|+++|.++++.++.+ .+++++||||||||++|++|++..+...... .....+.++||++|
T Consensus 26 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~--~~~~~~~~~lil~P 102 (228)
T 3iuy_A 26 QQYPDLLKSIIRVGILKPTPIQSQAWPIILQG-IDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS--REQRNGPGMLVLTP 102 (228)
T ss_dssp TTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHC-----------CCCSEEEECS
T ss_pred ccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhccch--hhccCCCcEEEEeC
Confidence 3556666665 68999999999999998876 4599999999999999999999887543211 01124568999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh---hhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
+++|+.|+++.+.+.. ..++++..++|+...... ...+++|+|+||+++..+.+... ..++++++|||||||++
T Consensus 103 t~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~--~~~~~~~~lViDEah~~ 179 (228)
T 3iuy_A 103 TRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS--VNLRSITYLVIDEADKM 179 (228)
T ss_dssp SHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC--CCCTTCCEEEECCHHHH
T ss_pred CHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--cCcccceEEEEECHHHH
Confidence 9999999999999864 457889999988765533 24578999999999855444432 45788999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL 688 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~ 688 (2158)
.+ +++..++.++.+ ...+.|++++|||+| .++..+.......+.
T Consensus 180 ~~~~~~~~~~~i~~~-------~~~~~~~l~~SAT~~--~~~~~~~~~~l~~p~ 224 (228)
T 3iuy_A 180 LDMEFEPQIRKILLD-------VRPDRQTVMTSATWP--DTVRQLALSYLKDPM 224 (228)
T ss_dssp HHTTCHHHHHHHHHH-------SCSSCEEEEEESCCC--HHHHHHHHTTCSSCE
T ss_pred hccchHHHHHHHHHh-------CCcCCeEEEEEeeCC--HHHHHHHHHHCCCCE
Confidence 76 577777766543 356889999999998 456666655443333
No 120
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=240.93 Aligned_cols=195 Identities=19% Similarity=0.297 Sum_probs=147.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.+++.+.+.+ .||.+|+++|.++++.++.++ +++++||||||||++|++|++..+.... ..+.++||++|
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~~-------~~~~~~lil~P 106 (245)
T 3dkp_A 35 KINSRLLQNILDAGFQMPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQLKQPA-------NKGFRALIISP 106 (245)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHHCSCC-------SSSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHHhhcc-------cCCceEEEEeC
Confidence 5677777766 699999999999999988875 5999999999999999999999885432 13568999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH----hhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR----QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~----~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
+++|+.|+++.+.+.+...++++..++|+..... ....+++|+|+||+++..+.+.......+.++++|||||||+
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~ 186 (245)
T 3dkp_A 107 TRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK 186 (245)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH
Confidence 9999999999999998888888888877543221 123578999999999866655543335678899999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL 688 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~ 688 (2158)
+.+ .++...+.+. ++.. .....+.|+++||||+| .++..|+......+.
T Consensus 187 ~~~~~~~~~~~~~~-~i~~--~~~~~~~~~~~~SAT~~--~~v~~~~~~~l~~p~ 236 (245)
T 3dkp_A 187 LFEDGKTGFRDQLA-SIFL--ACTSHKVRRAMFSATFA--YDVEQWCKLNLDNVI 236 (245)
T ss_dssp HHHHC--CHHHHHH-HHHH--HCCCTTCEEEEEESSCC--HHHHHHHHHHSSSCE
T ss_pred hcccccccHHHHHH-HHHH--hcCCCCcEEEEEeccCC--HHHHHHHHHhCCCCE
Confidence 876 2222233222 2221 12345789999999998 578888876654433
No 121
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.88 E-value=1.4e-22 Score=235.92 Aligned_cols=189 Identities=21% Similarity=0.340 Sum_probs=146.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++.+.+ .||.+|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 11 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--------~~~~~lil~Pt 81 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRG-ESMVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQAVITAPT 81 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHT-CCEEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhCc--------CCceEEEEcCc
Confidence 567777776 68999999999999999887 55999999999999999999999875431 34589999999
Q ss_pred HHHHHHHHHHHHhhcccC----CcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecc
Q 000114 560 KALVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~----gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEa 632 (2158)
++|+.|+++.+.+..... ++++..++|+....... ..+++|+|+||+++..+.+... ..+.++++||||||
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~lViDEa 159 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA--LDVHTAHILVVDEA 159 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC--CCGGGCCEEEECSH
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC--CCcCcceEEEEcCc
Confidence 999999999999887765 78899999987654332 2367999999999854444322 45678999999999
Q ss_pred ccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE
Q 000114 633 HLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY 690 (2158)
Q Consensus 633 H~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~ 690 (2158)
|.+.+ .++..++.++. ..+...|++++|||+|+ ++..++......+...
T Consensus 160 h~~~~~~~~~~l~~i~~-------~~~~~~~~l~~SAT~~~--~~~~~~~~~~~~p~~~ 209 (219)
T 1q0u_A 160 DLMLDMGFITDVDQIAA-------RMPKDLQMLVFSATIPE--KLKPFLKKYMENPTFV 209 (219)
T ss_dssp HHHHHTTCHHHHHHHHH-------TSCTTCEEEEEESCCCG--GGHHHHHHHCSSCEEE
T ss_pred hHHhhhChHHHHHHHHH-------hCCcccEEEEEecCCCH--HHHHHHHHHcCCCeEE
Confidence 99876 46555555443 23567899999999984 6666766554444433
No 122
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.88 E-value=4e-22 Score=229.76 Aligned_cols=182 Identities=20% Similarity=0.306 Sum_probs=143.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+...+ .||.+|+++|.++++.++.+ .+++++||||||||++|++|++..+.... .+.++||++|+
T Consensus 10 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~Pt 80 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSG-RDILARAKNGTGKSGAYLIPLLERLDLKK--------DNIQAMVIVPT 80 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHTT-CCEEEECCSSSTTHHHHHHHHHHHCCTTS--------CSCCEEEECSC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEECCCCCchHHHHHHHHHHHhcccC--------CCeeEEEEeCc
Confidence 567777766 68999999999999998877 56999999999999999999998865321 34589999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
++|+.|+++.+.+.+... ++++..++|+....... ...++|+|+||+++....++.. ..+.++++||+||||++
T Consensus 81 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 81 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV--AKVDHVQMIVLDEADKL 158 (206)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC--SCCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC--cCcccCCEEEEEChHHh
Confidence 999999999999988766 78999999987755432 3568999999999844443322 45678999999999988
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
.+ .++..++.++.. .+...|++++|||+| .++..++...
T Consensus 159 ~~~~~~~~l~~i~~~-------~~~~~~~l~~SAT~~--~~~~~~~~~~ 198 (206)
T 1vec_A 159 LSQDFVQIMEDIILT-------LPKNRQILLYSATFP--LSVQKFMNSH 198 (206)
T ss_dssp TSTTTHHHHHHHHHH-------SCTTCEEEEEESCCC--HHHHHHHHHH
T ss_pred HhhCcHHHHHHHHHh-------CCccceEEEEEeeCC--HHHHHHHHHH
Confidence 76 566666655433 345789999999998 4566666543
No 123
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.88 E-value=4.5e-22 Score=233.56 Aligned_cols=184 Identities=18% Similarity=0.249 Sum_probs=145.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++...+ .||..|+++|.++++.++.+ .|++++||||+|||++|+++++..+.... .+.++||++|+
T Consensus 31 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------~~~~~lil~Pt 101 (230)
T 2oxc_A 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCG-LDLIVQAKSGTGKTCVFSTIALDSLVLEN--------LSTQILILAPT 101 (230)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCceEEEEeCC
Confidence 577777766 78999999999999998876 56999999999999999999998875421 24589999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+.|+++.+.++.... ++++..++|+...... ...+++|+|+||+++..+.+... ..+.++++||+||||++.
T Consensus 102 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~--~~~~~~~~lViDEah~~~ 179 (230)
T 2oxc_A 102 REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDY--LNPGSIRLFILDEADKLL 179 (230)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTS--SCGGGCCEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCC--cccccCCEEEeCCchHhh
Confidence 999999999999987655 8899999998765443 34578999999999854444322 456789999999999987
Q ss_pred c-C-ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcccc
Q 000114 637 D-N-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685 (2158)
Q Consensus 637 d-~-rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~ 685 (2158)
+ + ++..++.++.+ .+...|++++|||+| .++..++.....
T Consensus 180 ~~~~~~~~~~~i~~~-------~~~~~~~l~lSAT~~--~~~~~~~~~~~~ 221 (230)
T 2oxc_A 180 EEGSFQEQINWIYSS-------LPASKQMLAVSATYP--EFLANALTKYMR 221 (230)
T ss_dssp STTSSHHHHHHHHHH-------SCSSCEEEEEESCCC--HHHHHHHTTTCS
T ss_pred cCcchHHHHHHHHHh-------CCCCCeEEEEEeccC--HHHHHHHHHHcC
Confidence 6 3 66666655443 355789999999988 567777765433
No 124
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.88 E-value=4.2e-22 Score=235.67 Aligned_cols=185 Identities=17% Similarity=0.221 Sum_probs=143.2
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc---CCCceEEEEEcccHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---~~~~~~~v~IaP~raL 1402 (2158)
++......+.. ||..|+|+|.++++.++.+ .+++++||||||||++|++|++..+.... ...++++||++|+++|
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g-~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L 114 (242)
T 3fe2_A 36 FPANVMDVIARQNFTEPTAIQAQGWPVALSG-LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL 114 (242)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHHT-CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHH
Confidence 55566666665 7999999999999999985 45999999999999999999999887531 1223489999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
+.|+++.+++ +....++++..++|+...... ....++|+|+||+++..++++. ...+++++++|+||||++.+.
T Consensus 115 ~~Q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 115 AQQVQQVAAE-YCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG--KTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp HHHHHHHHHH-HHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT--SCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHHHHHHH-HHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC--CCCcccccEEEEeCHHHHhhh
Confidence 9999999984 444457889999998765422 2345799999999998887663 345789999999999998865
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
+ +...+..+...++.+.|++++|||+++ .++++..+
T Consensus 192 ~------~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 192 G------FEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp T------CHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred C------cHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHH
Confidence 4 233344445566778999999999986 34444433
No 125
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=3.4e-21 Score=265.69 Aligned_cols=349 Identities=13% Similarity=0.194 Sum_probs=201.8
Q ss_pred CCCHHHHHHHHHHhcC-------------CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYNT-------------DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~-------------~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
.++|+|.+|++.++.. +.+.++++|||||||+++ +++++.+... +...++|||+|+++|+.|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--DFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--TTCCEEEEEECGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--CCCceEEEEeCcHHHHHHHH
Confidence 5999999999998751 356999999999999998 6666655442 22239999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcc-hh-hhcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1408 RDWEIKFGQGLGMRVVELTGETA-MD-LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~ltG~~~-~~-~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
+.+. .|... . +.|..+ .. .+.+ ..++|+|+||+++..++........+....+||+||||+... |.
T Consensus 348 ~~f~-~f~~~---~---v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~~- 417 (1038)
T 2w00_A 348 KEYQ-RFSPD---S---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--GE- 417 (1038)
T ss_dssp HHHH-TTSTT---C---SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--HH-
T ss_pred HHHH-Hhccc---c---cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--hH-
Confidence 9888 56532 1 122222 11 1222 356999999999988765422122356789999999998642 11
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCCh------HHHHHHhccCCCceEecCC-----CCcccccEEEEecccccch
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA------KDLGEWIGATSHGLFNFPP-----GVRPVPLEIHIQGVDITNF 1552 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n~------~dl~~wl~~~~~~i~~f~~-----~~rpv~l~~~i~~~~~~~~ 1552 (2158)
.... +...++ +.+++|||||+... .....++|.. ++.+.- ..--+|+.+....... .+
T Consensus 418 ---~~~~---I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~---i~~Y~l~~AI~dg~l~p~~v~y~~v~~-~~ 486 (1038)
T 2w00_A 418 ---AQKN---LKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRE---LHSYVITDAIRDEKVLKFKVDYNDVRP-QF 486 (1038)
T ss_dssp ---HHHH---HHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSE---EEEECHHHHHHHTSSCCEEEEECCCCG-GG
T ss_pred ---HHHH---HHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCe---eEeecHHHHHhCCCcCCeEEEEEeccc-hh
Confidence 2222 223333 57999999998753 2345555532 111110 0011222322221110 00
Q ss_pred H--------HHHHh-------cCh----HHHHHHHHhHh----------cCCCEEEEecChHHHHHHHHHHHhhccc---
Q 000114 1553 E--------ARMQA-------MTK----PTFTAIVQHAK----------NEKPALVFVPSRKYVRLTAVDLMTYSSM--- 1600 (2158)
Q Consensus 1553 ~--------~~~~~-------~~k----~~~~~i~~~~~----------~~~~~IVFv~sr~~~~~~a~~L~~~~~~--- 1600 (2158)
. ..... ... .....+..+.. .+.++||||+|+..|..++..|......
T Consensus 487 ~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~ 566 (1038)
T 2w00_A 487 KSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAAN 566 (1038)
T ss_dssp HHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcc
Confidence 0 00000 011 11222333221 2357999999999999999888664310
Q ss_pred --CCc--ccc-cccCCCc------------ccchhh-HhhhhHHH-------HHHHhcccEEEecC-CCCHHHHHHHHHH
Q 000114 1601 --DGD--QKS-AFLLWPA------------EEVEPF-IDNIQEEM-------LKATLRHGVGYLHE-GLNKTDQEVVSAL 1654 (2158)
Q Consensus 1601 --~~~--~~~-~~l~~~~------------~~l~~~-~~~i~d~~-------L~~~l~~gv~~~H~-~l~~~dR~~v~~~ 1654 (2158)
... ... ..++.+. +..... ...-.... ....++.. +.+. +-...+|..+.+.
T Consensus 567 ~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~--~~~~~~~~~~~R~~i~~~ 644 (1038)
T 2w00_A 567 KSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTN--FSTDSNGFQNYYRDLAQR 644 (1038)
T ss_dssp TSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCC--CCSSHHHHHHHHHHHHHH
T ss_pred cccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhccc--ccccchhhhHHHHHHHHH
Confidence 000 000 0111100 000000 00000000 11111110 0000 0113468999999
Q ss_pred HHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCC--CceEEEEEec
Q 000114 1655 FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD--NSGKCVILCH 1726 (2158)
Q Consensus 1655 F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d--~~G~~iil~~ 1726 (2158)
|++|.++|||+|+.+.+|+|+|.+.+++ .+.|.+...|+|++||+||.+.+ ..|.++-+..
T Consensus 645 Fk~g~i~ILIvvd~lltGfDiP~l~tly-----------lDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 645 VKNQDIDLLIVVGMFLTGFDAPTLNTLF-----------VDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHTTSSSEEEESSTTSSSCCCTTEEEEE-----------EESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHcCCCeEEEEcchHHhCcCcccccEEE-----------EccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999999999997765 23566788999999999998743 3466665554
No 126
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.88 E-value=6.7e-22 Score=233.07 Aligned_cols=186 Identities=17% Similarity=0.258 Sum_probs=143.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+++.+...+ .||..|+++|.++++.++.+ ++++++||||||||++|++|+++.+...... ...+.++||++|+
T Consensus 32 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----~~~~~~~lil~Pt 106 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLAFLVPVLEALYRLQWT----STDGLGVLIISPT 106 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHTTCC----GGGCCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEEeCCCCcHHHHHHHHHHHHHHhhccc----ccCCceEEEEeCC
Confidence 566666666 68999999999999998877 4599999999999999999999988653211 1235689999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+.|+++.+.+++...++++..++|+...... ...+++|+|+||+++ +.+.+... ..+.++++||+||||++.
T Consensus 107 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~--~~~~~~~~lViDEah~~~ 184 (236)
T 2pl3_A 107 RELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVS--FHATDLQMLVLDEADRIL 184 (236)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSS--CCCTTCCEEEETTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCC--cccccccEEEEeChHHHh
Confidence 9999999999999888888999999998765443 346789999999998 44433321 346789999999999887
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
+ +++..+..++.+ .+...|++++|||+++ ++..+....
T Consensus 185 ~~~~~~~~~~i~~~-------~~~~~~~l~~SAT~~~--~~~~~~~~~ 223 (236)
T 2pl3_A 185 DMGFADTMNAVIEN-------LPKKRQTLLFSATQTK--SVKDLARLS 223 (236)
T ss_dssp HTTTHHHHHHHHHT-------SCTTSEEEEEESSCCH--HHHHHHHHS
T ss_pred cCCcHHHHHHHHHh-------CCCCCeEEEEEeeCCH--HHHHHHHHh
Confidence 6 466666655443 3567899999999983 455555443
No 127
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.88 E-value=6.3e-22 Score=235.88 Aligned_cols=193 Identities=17% Similarity=0.242 Sum_probs=144.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCC-CCCCCCcEEEEEcc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG-SFNHSNYKIVYVAP 558 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~-~~~~~~~kil~iaP 558 (2158)
|++++...+ .||.+|+++|.++++.++.+ .+++++||||||||++|++|+++.+.......+ .....++++||++|
T Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~P 108 (253)
T 1wrb_A 30 LDPTIRNNILLASYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAP 108 (253)
T ss_dssp CCCSTTTTTTTTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEEC
Confidence 455555555 58999999999999998887 459999999999999999999998875431100 01123468999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
+++|+.|+++.+.++....++++..++|+....... ..+++|+|+||+++..+.+... ..+.++++||+||||++
T Consensus 109 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~~ 186 (253)
T 1wrb_A 109 TRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK--ISLEFCKYIVLDEADRM 186 (253)
T ss_dssp SHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS--BCCTTCCEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCC--CChhhCCEEEEeCHHHH
Confidence 999999999999998877788999999987655432 3468999999999854444332 35678999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~ 682 (2158)
.+ .++..+..++.++. .......|++++|||+++ ++..+...
T Consensus 187 ~~~~~~~~~~~i~~~~~---~~~~~~~q~l~~SAT~~~--~~~~~~~~ 229 (253)
T 1wrb_A 187 LDMGFEPQIRKIIEESN---MPSGINRQTLMFSATFPK--EIQKLAAD 229 (253)
T ss_dssp HHTTCHHHHHHHHHSSC---CCCGGGCEEEEEESSCCH--HHHHHHHH
T ss_pred HhCchHHHHHHHHhhcc---CCCCCCcEEEEEEEeCCH--HHHHHHHH
Confidence 76 57777777665321 011226899999999984 45555543
No 128
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=2.1e-21 Score=223.76 Aligned_cols=176 Identities=21% Similarity=0.300 Sum_probs=137.2
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|++...+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|++|++..+..... ++++||++|+++|+.|
T Consensus 10 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~apTGsGKT~~~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q 86 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSG-RDILARAKNGTGKSGAYLIPLLERLDLKKD--NIQAMVIVPTRELALQ 86 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHTT-CCEEEECCSSSTTHHHHHHHHHHHCCTTSC--SCCEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEECCCCCchHHHHHHHHHHHhcccCC--CeeEEEEeCcHHHHHH
Confidence 55666777766 7999999999999999875 569999999999999999999988765322 3489999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
+++.+++......+.++..++|+..... .....++|+|+||+++..++.+ ....+++++++|+||||++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~-- 162 (206)
T 1vec_A 87 VSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLSQD-- 162 (206)
T ss_dssp HHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTSTT--
T ss_pred HHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc--CCcCcccCCEEEEEChHHhHhhC--
Confidence 9999985443333788999999876542 2334579999999999877765 23457889999999999987643
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+...+..+...++.+.+++++|||+++
T Consensus 163 ----~~~~l~~i~~~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 163 ----FVQIMEDIILTLPKNRQILLYSATFPL 189 (206)
T ss_dssp ----THHHHHHHHHHSCTTCEEEEEESCCCH
T ss_pred ----cHHHHHHHHHhCCccceEEEEEeeCCH
Confidence 223333344445668999999999975
No 129
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.87 E-value=8e-22 Score=233.81 Aligned_cols=189 Identities=24% Similarity=0.364 Sum_probs=141.2
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.+.....+.+.. ||..|+|+|.++++.+++++ +++++||||||||++|++|++..+... ...++++||++|+++|+.
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~lil~Pt~~L~~ 112 (245)
T 3dkp_A 35 KINSRLLQNILDAGFQMPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQLKQP-ANKGFRALIISPTRELAS 112 (245)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHHCSC-CSSSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHHhhc-ccCCceEEEEeCCHHHHH
Confidence 355566666765 79999999999999999854 599999999999999999999988652 223348999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchhh----hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~~----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
|+++.+++ +....+.++..++|+..... .....++|+|+||+++..++++......+++++++|+||||++.++.
T Consensus 113 q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~ 191 (245)
T 3dkp_A 113 QIHRELIK-ISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDG 191 (245)
T ss_dssp HHHHHHHH-HTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC
T ss_pred HHHHHHHH-HhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccc
Confidence 99999995 44445788888877654332 22345699999999999888775444568899999999999997653
Q ss_pred -CChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhc
Q 000114 1481 -GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522 (2158)
Q Consensus 1481 -g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~ 1522 (2158)
+...+.+...+.. ..+.+.|+++||||+++ ++.+|+.
T Consensus 192 ~~~~~~~~~~i~~~---~~~~~~~~~~~SAT~~~--~v~~~~~ 229 (245)
T 3dkp_A 192 KTGFRDQLASIFLA---CTSHKVRRAMFSATFAY--DVEQWCK 229 (245)
T ss_dssp --CHHHHHHHHHHH---CCCTTCEEEEEESSCCH--HHHHHHH
T ss_pred cccHHHHHHHHHHh---cCCCCcEEEEEeccCCH--HHHHHHH
Confidence 2222333222222 22457899999999975 3444444
No 130
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=229.45 Aligned_cols=182 Identities=19% Similarity=0.286 Sum_probs=133.4
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc----CCCceEEEEEcccHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~----~~~~~~~v~IaP~ra 1401 (2158)
+.+...+.+.. ||..|+|+|.++++.++++ .|++++||||||||++|++|++..+.... ...++++||++|+++
T Consensus 27 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~ 105 (228)
T 3iuy_A 27 QYPDLLKSIIRVGILKPTPIQSQAWPIILQG-IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRE 105 (228)
T ss_dssp TCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHH
Confidence 44455666655 7999999999999999875 55999999999999999999998875421 112348999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
|+.|+++.++ .+.. .+.++..++|+..... .....++|+|+||+++..+... ....+++++++|+||||++.+
T Consensus 106 L~~q~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~ 181 (228)
T 3iuy_A 106 LALHVEAECS-KYSY-KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN--NSVNLRSITYLVIDEADKMLD 181 (228)
T ss_dssp HHHHHHHHHH-HHCC-TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT--TCCCCTTCCEEEECCHHHHHH
T ss_pred HHHHHHHHHH-Hhcc-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcCcccceEEEEECHHHHhc
Confidence 9999999998 4543 3778888888766542 2334569999999999887765 334578999999999999876
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHH
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGE 1519 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~ 1519 (2158)
.. +...+..+...++.+.|++++|||+++. ++++.
T Consensus 182 ~~------~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 182 ME------FEPQIRKILLDVRPDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp TT------CHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHH
T ss_pred cc------hHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHH
Confidence 53 2223333344456789999999999863 34433
No 131
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.87 E-value=1.6e-21 Score=227.84 Aligned_cols=180 Identities=23% Similarity=0.315 Sum_probs=137.9
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+...+ .||..|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTGsGKT~~~~~~~l~~l~~~~--------~~~~~lil~Pt 91 (224)
T 1qde_A 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAPT 91 (224)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTC--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHHhccC--------CCceEEEEECC
Confidence 567777666 58999999999999998877 45999999999999999999999875432 34589999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+.|+++.+.+.+...++++..++|+...... ....++|+|+||+++ +.+.+.. ..+.++++||+||||++.
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~---~~~~~~~~iViDEah~~~ 168 (224)
T 1qde_A 92 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEML 168 (224)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTS---SCCTTCCEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCC---cchhhCcEEEEcChhHHh
Confidence 9999999999999888888999999998765443 234589999999997 4444332 456789999999999987
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~ 682 (2158)
+ .++..+..++.. .+...|++++|||+++ ++..++..
T Consensus 169 ~~~~~~~l~~i~~~-------~~~~~~~i~lSAT~~~--~~~~~~~~ 206 (224)
T 1qde_A 169 SSGFKEQIYQIFTL-------LPPTTQVVLLSATMPN--DVLEVTTK 206 (224)
T ss_dssp HTTCHHHHHHHHHH-------SCTTCEEEEEESSCCH--HHHHHHHH
T ss_pred hhhhHHHHHHHHHh-------CCccCeEEEEEeecCH--HHHHHHHH
Confidence 6 466555554432 3568899999999984 44444443
No 132
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.87 E-value=2.1e-21 Score=226.11 Aligned_cols=175 Identities=20% Similarity=0.290 Sum_probs=136.7
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
+.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|.+|++..+.....+ .+++|++|+++|+.|
T Consensus 11 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~--~~~lil~Pt~~L~~q 87 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRG-ESMVGQSQTGTGKTHAYLLPIMEKIKPERAE--VQAVITAPTRELATQ 87 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHT-CCEEEECCSSHHHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhCcCC--ceEEEEcCcHHHHHH
Confidence 44455566655 7999999999999999985 5599999999999999999999988653223 389999999999999
Q ss_pred HHHHHHHHhcCCC----CcEEEEEcCCcchhhh--c-ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1406 RYRDWEIKFGQGL----GMRVVELTGETAMDLK--L-LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~----g~~v~~ltG~~~~~~~--~-l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
+++.+++ +.... +.++..+.|+...... . ...++|+|+||+++..++++ ....+.+++++|+||||++.+
T Consensus 88 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~ 164 (219)
T 1q0u_A 88 IYHETLK-ITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEADLMLD 164 (219)
T ss_dssp HHHHHHH-HHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSHHHHHH
T ss_pred HHHHHHH-HhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc--CCCCcCcceEEEEcCchHHhh
Confidence 9999985 44333 6788888888765422 2 23569999999999887765 234578899999999999876
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
.+ +...+..+...++.+.|++++|||+++
T Consensus 165 ~~------~~~~l~~i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 165 MG------FITDVDQIAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp TT------CHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred hC------hHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 43 233444555556778999999999976
No 133
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.87 E-value=1.9e-21 Score=228.12 Aligned_cols=184 Identities=20% Similarity=0.267 Sum_probs=140.8
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
+.....+.+.. ||..|+|+|.++++.++.+ .|++++||||||||++|.+|++..+.....+ .++||++|+++|+.|
T Consensus 31 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~lil~Pt~~L~~q 107 (230)
T 2oxc_A 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCG-LDLIVQAKSGTGKTCVFSTIALDSLVLENLS--TQILILAPTREIAVQ 107 (230)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcCCC--ceEEEEeCCHHHHHH
Confidence 55556666655 7999999999999999875 5699999999999999999999887653333 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
+++.+++......++++..++|+.... ...+..++|+|+||+++..+++. ....+++++++|+||||++.+.+ .
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~-~- 183 (230)
T 2oxc_A 108 IHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--DYLNPGSIRLFILDEADKLLEEG-S- 183 (230)
T ss_dssp HHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT--TSSCGGGCCEEEESSHHHHHSTT-S-
T ss_pred HHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc--CCcccccCCEEEeCCchHhhcCc-c-
Confidence 999998543333478899999987653 34556789999999999887765 23457899999999999997643 1
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhc
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~ 1522 (2158)
+.. .+..+...++...|++++|||+++. +.+++.
T Consensus 184 ~~~---~~~~i~~~~~~~~~~l~lSAT~~~~--~~~~~~ 217 (230)
T 2oxc_A 184 FQE---QINWIYSSLPASKQMLAVSATYPEF--LANALT 217 (230)
T ss_dssp SHH---HHHHHHHHSCSSCEEEEEESCCCHH--HHHHHT
T ss_pred hHH---HHHHHHHhCCCCCeEEEEEeccCHH--HHHHHH
Confidence 222 2233344456688999999998743 444443
No 134
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.86 E-value=2.5e-21 Score=226.18 Aligned_cols=176 Identities=23% Similarity=0.331 Sum_probs=134.7
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.+.....+.+.. ||..|+|+|.++++.++++ .|++++||||||||++|.+|++..+.....+ .+++|++|+++|+.
T Consensus 20 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~--~~~lil~Pt~~L~~ 96 (224)
T 1qde_A 20 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQRIDTSVKA--PQALMLAPTRELAL 96 (224)
T ss_dssp TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTCCS--CCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHHhccCCC--ceEEEEECCHHHHH
Confidence 355566666665 7999999999999999875 5599999999999999999999988663333 38999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
|+++.++ .+....++++..++|+.... ...+..++|+|+||+++...+.+ ....+.+++++|+||||++.+..
T Consensus 97 q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~-- 171 (224)
T 1qde_A 97 QIQKVVM-ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSG-- 171 (224)
T ss_dssp HHHHHHH-HHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTT--
T ss_pred HHHHHHH-HHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEcChhHHhhhh--
Confidence 9999998 45555588899999987643 33455689999999999877765 23457889999999999987543
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+...+..+...++.+.|++++|||+++
T Consensus 172 ----~~~~l~~i~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 172 ----FKEQIYQIFTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp ----CHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred ----hHHHHHHHHHhCCccCeEEEEEeecCH
Confidence 122333344445678999999999987
No 135
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.86 E-value=1.3e-21 Score=230.75 Aligned_cols=180 Identities=21% Similarity=0.325 Sum_probs=136.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++...+ .||..|+++|.++++.++.+ .|++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~li~apTGsGKT~~~~l~~l~~l~~~~--------~~~~~lil~Pt 107 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCIKG-YDVIAQAQSGTGKTATFAISILQQLEIEF--------KETQALVLAPT 107 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEECCCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCceEEEEECc
Confidence 567777666 68999999999999999877 45999999999999999999999875321 34589999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh----hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
++|+.|+++.+++++...++.+..++|+....... ...++|+|+||+++ +.+.+.. ..+..+++||+||||.
T Consensus 108 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 108 RELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY---LSPKWIKMFVLDEADE 184 (237)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS---SCSTTCCEEEEESHHH
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC---cCcccCcEEEECCchH
Confidence 99999999999998877788999999887654332 12389999999997 5554433 3467799999999998
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~ 682 (2158)
+.+ .++..+..++.+ .+...|++++|||+|+ ++..++..
T Consensus 185 ~~~~~~~~~l~~i~~~-------~~~~~~~i~~SAT~~~--~~~~~~~~ 224 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQK-------LNTSIQVVLLSATMPT--DVLEVTKK 224 (237)
T ss_dssp HHHTTCHHHHHHHHHH-------SCTTCEEEEECSSCCH--HHHHHHHH
T ss_pred hhccCcHHHHHHHHHh-------CCCCCeEEEEEEecCH--HHHHHHHH
Confidence 876 566666555433 3568899999999983 45454443
No 136
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=231.26 Aligned_cols=185 Identities=21% Similarity=0.272 Sum_probs=141.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.+.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|++|++..+.....+ ++++|++|+++|+.
T Consensus 49 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~--~~~lil~Ptr~L~~ 125 (249)
T 3ber_A 49 GVTDVLCEACDQLGWTKPTKIQIEAIPLALQG-RDIIGLAETGSGKTGAFALPILNALLETPQR--LFALVLTPTRELAF 125 (249)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHSCCS--SCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEEcCCCCCchhHhHHHHHHHHhcCCCC--ceEEEEeCCHHHHH
Confidence 355555666655 7999999999999999985 5599999999999999999999988773223 38999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+++.+++ +....++++..+.|+..... .....++|+|+||+++..++++.. ...+++++++|+||||++.+..
T Consensus 126 q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~l~~~~~lViDEah~l~~~~- 202 (249)
T 3ber_A 126 QISEQFEA-LGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK-GFNLRALKYLVMDEADRILNMD- 202 (249)
T ss_dssp HHHHHHHH-HHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST-TCCCTTCCEEEECSHHHHHHTT-
T ss_pred HHHHHHHH-HhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-CcCccccCEEEEcChhhhhccC-
Confidence 99999984 54445788999999876432 233567999999999988776532 2347889999999999887643
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
+...+..+...++.+.+++++|||+++ ..+++.++
T Consensus 203 -----~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~ 238 (249)
T 3ber_A 203 -----FETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA 238 (249)
T ss_dssp -----CHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 222334444555678999999999986 34444443
No 137
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.86 E-value=5.5e-20 Score=234.99 Aligned_cols=347 Identities=16% Similarity=0.148 Sum_probs=221.6
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.+.++|-..--.+.. +. |..+.||+|||++|.+|++-.... +. .+.+++|+..||.+-++.+. .+...+|+
T Consensus 75 r~~dvQligg~~L~~-G~--iaEM~TGEGKTLva~lp~~lnAL~---G~--~vhVvT~ndyLA~rdae~m~-~l~~~Lgl 145 (822)
T 3jux_A 75 RPFDVQVMGGIALHE-GK--VAEMKTGEGKTLAATMPIYLNALI---GK--GVHLVTVNDYLARRDALWMG-PVYLFLGL 145 (822)
T ss_dssp CCCHHHHHHHHHHHT-TC--EEECCTTSCHHHHTHHHHHHHHTT---SS--CEEEEESSHHHHHHHHHHHH-HHHHHTTC
T ss_pred CCcHHHHHHHHHHhC-CC--hhhccCCCCccHHHHHHHHHHHhc---CC--ceEEEeccHHHHHhHHHHHH-HHHHHhCC
Confidence 466677666655544 33 889999999999999998744333 33 68899999999999988777 45556799
Q ss_pred EEEEEcCC--------------------------------------------------cch-hhhcccCCcEEEeCHHHH
Q 000114 1421 RVVELTGE--------------------------------------------------TAM-DLKLLEKGQIIISTPEKW 1449 (2158)
Q Consensus 1421 ~v~~ltG~--------------------------------------------------~~~-~~~~l~~~~IIV~TPe~l 1449 (2158)
+|+.++++ .+. ..+..-.+||+++|..-+
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~Ef 225 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEF 225 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcch
Confidence 99988872 111 122334569999999877
Q ss_pred H-HHHhhh----hccccccceeEEEeccccccc-CC-C------CCh--HHHHHHHHHHHHhhcC---------------
Q 000114 1450 D-ALSRRW----KQRKYVQQVSLFIIDELHLIG-GQ-G------GPV--LEVIVSRMRYIASQVE--------------- 1499 (2158)
Q Consensus 1450 ~-~l~r~~----~~~~~l~~v~llIiDEaH~l~-~~-~------g~~--~e~~isrl~~i~~~~~--------------- 1499 (2158)
- +.+|-. ......+...+.||||+|.++ ++ + |+. -.....++..+...+.
T Consensus 226 gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~ 305 (822)
T 3jux_A 226 GFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTII 305 (822)
T ss_dssp HHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEE
T ss_pred hhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEE
Confidence 3 344431 112234668999999999553 11 1 210 0011111111111000
Q ss_pred -----------------------------------------C--------------------------------------
Q 000114 1500 -----------------------------------------N-------------------------------------- 1500 (2158)
Q Consensus 1500 -----------------------------------------~-------------------------------------- 1500 (2158)
.
T Consensus 306 lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaK 385 (822)
T 3jux_A 306 LTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAK 385 (822)
T ss_dssp ECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHH
Confidence 0
Q ss_pred -----------------------CceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHH
Q 000114 1501 -----------------------KIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (2158)
Q Consensus 1501 -----------------------~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~ 1556 (2158)
-.++.|||+|+.. ..++.+..+.. ++.. |..+|..-... ...-........
T Consensus 386 Egv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~---vv~I-Ptnkp~~R~d~-~d~vy~t~~eK~ 460 (822)
T 3jux_A 386 EGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME---VVVI-PTHKPMIRKDH-DDLVFRTQKEKY 460 (822)
T ss_dssp HSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC---EEEC-CCSSCCCCEEC-CCEEESSHHHHH
T ss_pred cCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe---EEEE-CCCCCcceeec-CcEEEecHHHHH
Confidence 2358889999866 34455555433 3333 44444322211 000001111111
Q ss_pred HhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccE
Q 000114 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2158)
Q Consensus 1557 ~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv 1636 (2158)
. .....+......+.|+||||+|++.|+.++..|.. .+..+
T Consensus 461 ~----al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~-----------------------------------~Gi~~ 501 (822)
T 3jux_A 461 E----KIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKK-----------------------------------KGIPH 501 (822)
T ss_dssp H----HHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHT-----------------------------------TTCCC
T ss_pred H----HHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHH-----------------------------------CCCCE
Confidence 1 22233333324688999999999999999976632 23447
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCC--------ccEEEEecceeecCCCCcCcCCCHHHHHHhhc
Q 000114 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT--------AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708 (2158)
Q Consensus 1637 ~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp--------~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~G 1708 (2158)
..+||+....+|..+.+.|+.| .|+|||++++||+|++ +..+|| ++..|-+...|.||+|
T Consensus 502 ~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVI----------nte~Pes~r~y~qriG 569 (822)
T 3jux_A 502 QVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCII----------GTERHESRRIDNQLRG 569 (822)
T ss_dssp EEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEE----------ESSCCSSHHHHHHHHT
T ss_pred EEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEE----------ecCCCCCHHHHHHhhC
Confidence 7899998777777777777766 6999999999999998 556888 6778889999999999
Q ss_pred cCCCCCCCCceEEEEEecCChH-------HHHHHHh-----hCCCccccchhhHHHHH
Q 000114 1709 HASRPLLDNSGKCVILCHAPRK-------EYYKKFL-----YDAFPVESHLHHFLHDN 1754 (2158)
Q Consensus 1709 RaGR~g~d~~G~~iil~~~~~~-------~~~~k~l-----~~~~piES~L~~~l~d~ 1754 (2158)
|+||.| ..|.++.++...+. +.+++++ .+..|+++.+.....+.
T Consensus 570 RTGRqG--~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~ 625 (822)
T 3jux_A 570 RAGRQG--DPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIEN 625 (822)
T ss_dssp TSSCSS--CCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHHHH
T ss_pred ccccCC--CCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCCceeccHHHHHHHHH
Confidence 999998 78998888876652 2222322 35778999886554433
No 138
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.86 E-value=4.2e-21 Score=226.34 Aligned_cols=181 Identities=21% Similarity=0.344 Sum_probs=134.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|.....+.+.. ||..|+|+|.++++.++.+ .|++++||||||||++|.+|+++.+.....+ .+++|++|+++|+.|
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~li~apTGsGKT~~~~l~~l~~l~~~~~~--~~~lil~Pt~~L~~q 113 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCIKG-YDVIAQAQSGTGKTATFAISILQQLEIEFKE--TQALVLAPTRELAQQ 113 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEECCCSSHHHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcCCC--ceEEEEECcHHHHHH
Confidence 55566666665 7999999999999999975 5599999999999999999999887653233 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhh--hcc-cC-CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL--KLL-EK-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~--~~l-~~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
+++.++ .++...+.++..+.|+..... ..+ .. ++|+|+||+++..++.+ ....+.+++++|+||||++.+.+
T Consensus 114 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~~- 189 (237)
T 3bor_A 114 IQKVIL-ALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--RYLSPKWIKMFVLDEADEMLSRG- 189 (237)
T ss_dssp HHHHHH-HHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHHTT-
T ss_pred HHHHHH-HHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--CCcCcccCcEEEECCchHhhccC-
Confidence 999998 565555788888888765432 222 22 69999999998877754 23457889999999999887543
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHH
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGE 1519 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~ 1519 (2158)
+...+..+...++.+.|++++|||+++ ..+++.
T Consensus 190 -----~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 190 -----FKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp -----CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHH
T ss_pred -----cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHH
Confidence 122233344445678999999999976 334443
No 139
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.86 E-value=5.9e-21 Score=222.45 Aligned_cols=184 Identities=21% Similarity=0.297 Sum_probs=142.3
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|++...+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|+++++..+... .++++++|++|+++|+.
T Consensus 20 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil~Pt~~L~~ 96 (220)
T 1t6n_A 20 LLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMCHTRELAF 96 (220)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEEECSCHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCchhhhhhHHHHHhhhcc--CCCEEEEEEeCCHHHHH
Confidence 355666777765 7999999999999999985 5599999999999999999999887652 22348999999999999
Q ss_pred HHHHHHHHHhcCC-CCcEEEEEcCCcchh--hhccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1405 ERYRDWEIKFGQG-LGMRVVELTGETAMD--LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1405 q~~~~~~~~f~~~-~g~~v~~ltG~~~~~--~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
|+++.+++ +... .++++..++|+.... .+.+. .++|+|+||+++..++++. ...+++++++|+||||++.++
T Consensus 97 q~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 97 QISKEYER-FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHHH-HTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHHH-HHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC--CCCcccCCEEEEcCHHHHhcc
Confidence 99999984 5443 378999999987643 22222 3599999999998887763 345789999999999998754
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHH
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEW 1520 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~w 1520 (2158)
.+ +...+..+....+.+.|++++|||+++ .+++++.
T Consensus 174 ~~-----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 174 LD-----MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp HH-----HHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred cC-----cHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 22 334445555556778999999999987 3455543
No 140
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.86 E-value=9.4e-21 Score=225.75 Aligned_cols=174 Identities=17% Similarity=0.287 Sum_probs=131.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-------CCCceEEEEEcccHHHHHHHHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-------ETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-------~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
||..|+|+|.++++.++.+ .+++++||||||||++|++|++..+.... ...++++||++|+++|+.|+++.+
T Consensus 42 g~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 42 SYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp TCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 6999999999999999885 55999999999999999999999886532 112248999999999999999999
Q ss_pred HHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC-CChHHH
Q 000114 1411 EIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEV 1486 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~-g~~~e~ 1486 (2158)
+ .+....++++..++|+..... .....++|+|+||+++..++++. ...+++++++|+||||++.+.+ +..++.
T Consensus 121 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 121 Q-KFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--KISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp H-HHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--SBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred H-HHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 8 455555788888888876442 22345699999999998887763 3457889999999999987653 333333
Q ss_pred HHHHHHHHHhhcCC--CceEEEeccCCCC-hHHHHHH
Q 000114 1487 IVSRMRYIASQVEN--KIRIVALSTSLAN-AKDLGEW 1520 (2158)
Q Consensus 1487 ~isrl~~i~~~~~~--~~riV~lSATl~n-~~dl~~w 1520 (2158)
++.++ ..+. +.|++++|||+++ ..+++..
T Consensus 198 i~~~~-----~~~~~~~~q~l~~SAT~~~~~~~~~~~ 229 (253)
T 1wrb_A 198 IIEES-----NMPSGINRQTLMFSATFPKEIQKLAAD 229 (253)
T ss_dssp HHHSS-----CCCCGGGCEEEEEESSCCHHHHHHHHH
T ss_pred HHhhc-----cCCCCCCcEEEEEEEeCCHHHHHHHHH
Confidence 22211 1222 6899999999976 3444443
No 141
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.85 E-value=4.9e-21 Score=220.74 Aligned_cols=174 Identities=22% Similarity=0.279 Sum_probs=136.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+++.+...+ .|+..|+++|.++++.++.+ .+++++||||+|||++|++++++.+..... ...+.+++|++|+
T Consensus 8 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-----~~~~~~~lil~P~ 81 (207)
T 2gxq_A 8 LKPEILEALHGRGLTTPTPIQAAALPLALEG-KDLIGQARTGTGKTLAFALPIAERLAPSQE-----RGRKPRALVLTPT 81 (207)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCCC-----TTCCCSEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCcEEEEECC
Confidence 566777666 68999999999999998887 459999999999999999999998754221 1235689999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+.|+++.+.+.+.. +++..++|+....... ..+++|+|+||+++..+.+... ..+.++++||+||||.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV--LDLSRVEVAVLDEADEML 157 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS--SCCTTCSEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC--cchhhceEEEEEChhHhh
Confidence 99999999999997654 6788888887654322 3578999999999844443322 356789999999999887
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn 672 (2158)
+ .++..++.++. ..+...|++++|||+|+
T Consensus 158 ~~~~~~~~~~i~~-------~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 158 SMGFEEEVEALLS-------ATPPSRQTLLFSATLPS 187 (207)
T ss_dssp HTTCHHHHHHHHH-------TSCTTSEEEEECSSCCH
T ss_pred ccchHHHHHHHHH-------hCCccCeEEEEEEecCH
Confidence 6 56666665543 23567899999999984
No 142
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=7.8e-20 Score=245.60 Aligned_cols=329 Identities=16% Similarity=0.181 Sum_probs=206.4
Q ss_pred CCCHHHHHHHHHHH--------cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 495 QLNRVQSRVYKSAL--------SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l--------~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
.|+|+|.+++..++ .+..+.|++.+||+|||++++..+...+...... .....++|+|+|+ +|+.|+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~----~p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC----KPEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS----SCSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc----cCCCCcEEEEecH-HHHHHH
Confidence 68999999999875 3445799999999999999988877766543211 1123469999997 899999
Q ss_pred HHHHHhhcccCCcEEEEEeCCCccCH-hhh----------ccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQTLTR-QQI----------EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~-~~~----------~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
.+++.+.+.. .+.+..+.|+..... ... ..++|+|+|++.+..... ......+++||+||+|.+
T Consensus 130 ~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~----~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 130 YNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE----VLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT----TTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH----HhhcCCccEEEEECceec
Confidence 9999987764 455666666543211 110 147899999997532211 122345789999999998
Q ss_pred ccCChhhHHHHHHHHHHHHhhccccccEEEEccccC-C-hHHH---HHHHhccc--------------------------
Q 000114 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP-N-YEDV---ALFLRVNL-------------------------- 684 (2158)
Q Consensus 636 ~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp-n-~~dv---~~~l~~~~-------------------------- 684 (2158)
.......... +.. . ...+.++||||+- | ..++ -.|+....
T Consensus 205 kn~~~~~~~a-l~~-------l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~ 275 (644)
T 1z3i_X 205 KNSDNQTYLA-LNS-------M-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDK 275 (644)
T ss_dssp CTTCHHHHHH-HHH-------H-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSH
T ss_pred CChhhHHHHH-HHh-------c-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHH
Confidence 6533222221 111 1 2346799999952 1 1111 11111000
Q ss_pred ---------------cCceEEecC-----CcccccceeEEEeeccCChh---------------------------HHHH
Q 000114 685 ---------------EKGLFYFDN-----SYRPVPLSQQYIGIQVKKPL---------------------------QRFQ 717 (2158)
Q Consensus 685 ---------------~~~~~~f~~-----~~rpv~l~~~~~~~~~~~~~---------------------------~~~~ 717 (2158)
-.+.+.... ..-|.... ..+.+...... ..+.
T Consensus 276 ~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~-~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~ 354 (644)
T 1z3i_X 276 DRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIE-QVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSIT 354 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEE-EEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceE-EEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHH
Confidence 000000000 00111111 11111100000 0000
Q ss_pred HhhH-------------------------------------------HHHHHHHHH---hCCCeEEEEecChHHHHHHHH
Q 000114 718 LMND-------------------------------------------LCYEKVVAV---AGKHQVLIFVHSRKETAKTAR 751 (2158)
Q Consensus 718 ~l~~-------------------------------------------~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~ 751 (2158)
.+.. .+...++.. ..+.++|||++.+..+..++.
T Consensus 355 ~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~ 434 (644)
T 1z3i_X 355 SLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEK 434 (644)
T ss_dssp HHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHH
Confidence 0000 011112221 236799999999999988888
Q ss_pred HHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCce---EEEech
Q 000114 752 AIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ---VLVSTA 828 (2158)
Q Consensus 752 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~---VLVaT~ 828 (2158)
.|...++ .+..+||+|+..+|..+++.|++|... +|+||.
T Consensus 435 ~l~~~g~-------------------------------------~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 435 LCRNRRY-------------------------------------LYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp HHHHHTC-------------------------------------CEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred HHHHCCC-------------------------------------CEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 8776542 355679999999999999999998764 899999
Q ss_pred hhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 829 tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
+++.|+|++++++||+ ||++- ++..+.|++||++|.|..+...++.++....
T Consensus 478 a~g~Glnl~~a~~Vi~----~d~~w------np~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVM----FDPDW------NPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp GSCTTCCCTTEEEEEE----CSCCS------SHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred cccCCcccccCCEEEE----ECCCC------CccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 9999999999999999 55543 6678999999999999776666776666654
No 143
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.85 E-value=7.6e-21 Score=224.03 Aligned_cols=186 Identities=20% Similarity=0.277 Sum_probs=141.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc--CCCceEEEEEcccHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~--~~~~~~~v~IaP~raLa 1403 (2158)
+.....+.+.. ||..|+|+|.++++.++++ ++++++||||||||++|++|++..+.... ...+++++|++|+++|+
T Consensus 32 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~ 110 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 110 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHH
Confidence 55556666655 7999999999999999875 55999999999999999999998876521 11234899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
.|+++.++ .++...++++..++|+.... ...+..++|+|+||+++...+.+. ....+.+++++|+||||++.+..
T Consensus 111 ~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~~~~~~- 187 (236)
T 2pl3_A 111 YQTFEVLR-KVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILDMG- 187 (236)
T ss_dssp HHHHHHHH-HHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHC-SSCCCTTCCEEEETTHHHHHHTT-
T ss_pred HHHHHHHH-HHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhc-CCcccccccEEEEeChHHHhcCC-
Confidence 99999998 55555578899999986543 344567899999999998776542 12356789999999999887543
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
+...+..+...++.+.|++++|||+++ ..+++...
T Consensus 188 -----~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 188 -----FADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp -----THHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred -----cHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 223344455556778999999999976 34555443
No 144
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.85 E-value=4.2e-21 Score=223.67 Aligned_cols=175 Identities=22% Similarity=0.271 Sum_probs=135.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+.+.+ .||..|+++|.++++.++.+ .+++++||||+|||++|+++++..+.... .+.++||++|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~Pt 91 (220)
T 1t6n_A 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCHT 91 (220)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCT--------TCCCEEEECSC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCchhhhhhHHHHHhhhccC--------CCEEEEEEeCC
Confidence 556666666 68999999999999999887 45999999999999999999998864321 24589999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh----hccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
++|+.|+++.+.++.... ++++..++|+....... ...++|+|+||+++..+.+... ..+.++++||+||||+
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~lViDEah~ 169 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS--LNLKHIKHFILDECDK 169 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEESHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC--CCcccCCEEEEcCHHH
Confidence 999999999999887665 78999999987654432 1346999999999855554432 4578899999999999
Q ss_pred cccCChhhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000114 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2158)
Q Consensus 635 l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn 672 (2158)
+.+..+ +...+.++ ....+...|++++|||+++
T Consensus 170 ~~~~~~--~~~~~~~i---~~~~~~~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 170 MLEQLD--MRRDVQEI---FRMTPHEKQVMMFSATLSK 202 (220)
T ss_dssp HHSSHH--HHHHHHHH---HHTSCSSSEEEEEESCCCT
T ss_pred HhcccC--cHHHHHHH---HHhCCCcCeEEEEEeecCH
Confidence 875322 22222222 2234568899999999985
No 145
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.4e-19 Score=249.26 Aligned_cols=327 Identities=17% Similarity=0.191 Sum_probs=208.6
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.+|+|+|.+++..++ ..+.+.|++.+||+|||++++..+...+..... ...+|||+| .+|+.|+.++|
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~--------~~~~LIV~P-~sll~qW~~E~ 305 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ--------NGPHIIVVP-LSTMPAWLDTF 305 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC--------CSCEEEECC-TTTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC--------CCCEEEEEC-chHHHHHHHHH
Confidence 379999999998654 355679999999999999987777655543321 236899999 78999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh---------------hhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ---------------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---------------~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
.+.+. ++++..++|+...... .....+|+|+|++.+..-... .....+++|||||||.+
T Consensus 306 ~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~----l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 306 EKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE----LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH----HHTSEEEEEEETTGGGG
T ss_pred HHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH----HhcCCcceeehhhhhhh
Confidence 98764 5678888886543221 123578999999976221111 11124689999999998
Q ss_pred ccCChhhHHHHHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCc-----eEEecCC--------------
Q 000114 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKG-----LFYFDNS-------------- 694 (2158)
Q Consensus 636 ~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp--n~~dv~~~l~~~~~~~-----~~~f~~~-------------- 694 (2158)
......... . +... ...+.++||||+- +..++...+..-.+.. .+.+...
T Consensus 380 kn~~s~~~~-~-------l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 450 (800)
T 3mwy_W 380 KNAESSLYE-S-------LNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRR 450 (800)
T ss_dssp CCSSSHHHH-H-------HTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHT
T ss_pred cCchhHHHH-H-------HHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHH
Confidence 643221111 1 1222 3345688999952 3444444333210000 0000000
Q ss_pred ccc-------------ccc-eeEEEeeccCChhHH---------------------------HHHhhH------------
Q 000114 695 YRP-------------VPL-SQQYIGIQVKKPLQR---------------------------FQLMND------------ 721 (2158)
Q Consensus 695 ~rp-------------v~l-~~~~~~~~~~~~~~~---------------------------~~~l~~------------ 721 (2158)
.+| .|- ....+.+........ +..+..
T Consensus 451 l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~ 530 (800)
T 3mwy_W 451 IQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAE 530 (800)
T ss_dssp TGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHH
T ss_pred HhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchH
Confidence 000 111 111111111100000 000000
Q ss_pred ----------------------------HHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCc
Q 000114 722 ----------------------------LCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS 771 (2158)
Q Consensus 722 ----------------------------~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 771 (2158)
.....++... .++++||||..+..+..++..|...++
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~------------- 597 (800)
T 3mwy_W 531 ERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGI------------- 597 (800)
T ss_dssp HHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCC-------------
Confidence 0011122221 367999999999999888888876543
Q ss_pred hhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCc---eEEEechhhhhccCCCceEEEEecccc
Q 000114 772 VSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV---QVLVSTATLAWGVNLPAHTVIIKGTQI 848 (2158)
Q Consensus 772 ~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i---~VLVaT~tla~GVdlP~v~vVI~~~~~ 848 (2158)
.+..+||+++..+|..+++.|++|.. .+|+||.+++.|+|+|++++||.++.+
T Consensus 598 ------------------------~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 598 ------------------------NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSD 653 (800)
T ss_dssp ------------------------CCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCC
T ss_pred ------------------------CEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCC
Confidence 34567999999999999999998655 499999999999999999999995555
Q ss_pred cCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 849 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 849 yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
+ ++..+.|++||++|.|..+...++.++.....
T Consensus 654 w----------np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 654 W----------NPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp S----------CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred C----------ChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 4 45579999999999998777777777777644
No 146
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.84 E-value=1.9e-19 Score=241.27 Aligned_cols=118 Identities=18% Similarity=0.227 Sum_probs=99.8
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.+.++||||+|++.++.++..|.+.+. .+.++||+|++.+|..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~lh~~~~~~~R~~ 480 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGI-------------------------------------RARYLHHELDAFKRQA 480 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTCCHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC-------------------------------------CceeecCCCCHHHHHH
Confidence 477999999999999999999987542 3567799999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
+++.|++|.++|||||+++++|+|+|++++||+ |+.+..++ +.|..+|+||+|||||.+ .|.++++++..+.
T Consensus 481 ~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~----~d~d~~G~-p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 481 LIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARNA---RGEVWLYADRVSE 552 (664)
T ss_dssp HHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCSG-GGSHHHHHHHHGGGTTST---TCEEEEECSSCCH
T ss_pred HHHHhhcCCceEEEccChhhcCccCCCCCEEEE----eCCcccCC-CCCHHHHHHHHCccCcCC---CCEEEEEEcCCCH
Confidence 999999999999999999999999999999998 55432111 238889999999999974 6999999988765
Q ss_pred HHH
Q 000114 892 RYY 894 (2158)
Q Consensus 892 ~~y 894 (2158)
...
T Consensus 553 ~~~ 555 (664)
T 1c4o_A 553 AMQ 555 (664)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 147
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.84 E-value=2.1e-20 Score=215.46 Aligned_cols=184 Identities=22% Similarity=0.278 Sum_probs=138.4
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~ 1404 (2158)
+.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|.++++..+.... ...+++++|++|+++|+.
T Consensus 8 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~ 86 (207)
T 2gxq_A 8 LKPEILEALHGRGLTTPTPIQAAALPLALEG-KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELAL 86 (207)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHH
Confidence 44455556555 7999999999999999885 55999999999999999999998876421 122348999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+++.+++.+. +.++..++|+.... ......++|+|+||+++..++++ ....+++++++|+||||++.+..
T Consensus 87 q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~- 160 (207)
T 2gxq_A 87 QVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--GVLDLSRVEVAVLDEADEMLSMG- 160 (207)
T ss_dssp HHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--TSSCCTTCSEEEEESHHHHHHTT-
T ss_pred HHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--CCcchhhceEEEEEChhHhhccc-
Confidence 99999995443 36778888876543 22334679999999999887765 34457889999999999887543
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhc
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIG 1522 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~ 1522 (2158)
+...+..+....+.+.|++++|||+++ .+++.+++.
T Consensus 161 -----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 161 -----FEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM 197 (207)
T ss_dssp -----CHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC
T ss_pred -----hHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc
Confidence 122233344455678999999999987 455655543
No 148
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.5e-19 Score=246.76 Aligned_cols=325 Identities=14% Similarity=0.141 Sum_probs=207.2
Q ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
..++|+|.+++..++ ..+.+.|++.+||+|||+.+...+...+......+ .+|||+| .+|+.|+.+++.+ +..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~--~~LIV~P-~sll~qW~~E~~~-~~p 310 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNG--PHIIVVP-LSTMPAWLDTFEK-WAP 310 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCS--CEEEECC-TTTHHHHHHHHHH-HST
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCC--CEEEEEC-chHHHHHHHHHHH-HCC
Confidence 479999999998654 45678999999999999998666655544433344 7899999 7889999999884 432
Q ss_pred CCCcEEEEEcCCcchhh---------------hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1417 GLGMRVVELTGETAMDL---------------KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~---------------~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
+.++..++|+..... ......+|+|+|++.+....... .-..+++|||||||++.+...
T Consensus 311 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l----~~~~w~~vIvDEaH~lkn~~s 384 (800)
T 3mwy_W 311 --DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL----GSIKWQFMAVDEAHRLKNAES 384 (800)
T ss_dssp --TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH----HTSEEEEEEETTGGGGCCSSS
T ss_pred --CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH----hcCCcceeehhhhhhhcCchh
Confidence 578888888754321 12235589999999875432221 123689999999999964332
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHH---HHhccCCCc---eEecCCC--------------Ccc--
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLG---EWIGATSHG---LFNFPPG--------------VRP-- 1537 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~---~wl~~~~~~---i~~f~~~--------------~rp-- 1537 (2158)
.+ . .....+. ..+.++||||+-. ..++. .|+...... .+.+... .+|
T Consensus 385 -~~---~----~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 455 (800)
T 3mwy_W 385 -SL---Y----ESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFI 455 (800)
T ss_dssp -HH---H----HHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGE
T ss_pred -HH---H----HHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHH
Confidence 11 1 1112222 4456889999732 33332 333221100 0000000 000
Q ss_pred -----------cc-cEEEEecccccch-----HHHHH-------------------------------------------
Q 000114 1538 -----------VP-LEIHIQGVDITNF-----EARMQ------------------------------------------- 1557 (2158)
Q Consensus 1538 -----------v~-l~~~i~~~~~~~~-----~~~~~------------------------------------------- 1557 (2158)
.| ....+........ ...+.
T Consensus 456 lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~ 535 (800)
T 3mwy_W 456 LRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQ 535 (800)
T ss_dssp EECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCC
T ss_pred hhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHH
Confidence 00 0111111110000 00000
Q ss_pred ----------------hcChHH---HH-HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccch
Q 000114 1558 ----------------AMTKPT---FT-AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2158)
Q Consensus 1558 ----------------~~~k~~---~~-~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2158)
...... +. .+......+.++||||..+..+..++..|.
T Consensus 536 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~---------------------- 593 (800)
T 3mwy_W 536 KFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS---------------------- 593 (800)
T ss_dssp CC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH----------------------
T ss_pred hcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH----------------------
Confidence 000001 11 111222457799999999988877765542
Q ss_pred hhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCc---eEEEecCccccccCCCccEEEEecceeecCCCCc
Q 000114 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI---KVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENA 1694 (2158)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i---~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~ 1694 (2158)
..+..+..+||+++..+|..+++.|++|.. .+|++|.+++.|+|+++..+|| ++
T Consensus 594 -------------~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI----------~~ 650 (800)
T 3mwy_W 594 -------------IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV----------IF 650 (800)
T ss_dssp -------------HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE----------ES
T ss_pred -------------hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEE----------Ee
Confidence 125568899999999999999999998654 4999999999999999888888 45
Q ss_pred CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1695 HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1695 ~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
+.+.++..+.|++||++|.|..+...++.++...
T Consensus 651 D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 651 DSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp SCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred cCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 6677899999999999999987788888777665
No 149
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.83 E-value=1.1e-18 Score=234.43 Aligned_cols=327 Identities=15% Similarity=0.161 Sum_probs=204.4
Q ss_pred CCCCHHHHHHHHHHh--------cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCC--CceEEEEEcccHHHHHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLY--------NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET--GVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~--------~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~--~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
..++|+|.+++..++ .++.+.|++.+||+|||+.+...+...+...... ...++|||+|+ +|+.|+.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 379999999999876 3456799999999999999977766655542111 11268999997 899999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcchhh-----hcc------cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMDL-----KLL------EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~~-----~~l------~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
+.+.++. .+.+..+.|+..... ..+ ...+|+|+|++.+..... ......+++||+||||++.+
T Consensus 133 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~----~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 133 VGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE----VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT----TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH----HhhcCCccEEEEECceecCC
Confidence 9855543 345666666543321 111 136899999998654322 12234688999999999965
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--H------------------HHHHHhccC------CC------
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--K------------------DLGEWIGAT------SH------ 1526 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~------------------dl~~wl~~~------~~------ 1526 (2158)
.....+ ..+..+ . ..+.++||||+-.- . .+..++... ..
T Consensus 207 ~~~~~~----~al~~l----~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 277 (644)
T 1z3i_X 207 SDNQTY----LALNSM----N-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDR 277 (644)
T ss_dssp TCHHHH----HHHHHH----C-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHH
T ss_pred hhhHHH----HHHHhc----c-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHH
Confidence 331111 111222 2 45779999997321 1 111111100 00
Q ss_pred ----------------ceEecC----CCCcccccEEEEecccccc-----hH-------------------HHHH---h-
Q 000114 1527 ----------------GLFNFP----PGVRPVPLEIHIQGVDITN-----FE-------------------ARMQ---A- 1558 (2158)
Q Consensus 1527 ----------------~i~~f~----~~~rpv~l~~~i~~~~~~~-----~~-------------------~~~~---~- 1558 (2158)
.+..-. ...-|...+..+ ...... |. ..+. .
T Consensus 278 ~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v-~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~L 356 (644)
T 1z3i_X 278 AAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVV-CCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSL 356 (644)
T ss_dssp HHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEE-EECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEE-EeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHH
Confidence 000000 000111111111 000000 00 0000 0
Q ss_pred ----------------------------------------cC-h-HHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHH
Q 000114 1559 ----------------------------------------MT-K-PTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDL 1594 (2158)
Q Consensus 1559 ----------------------------------------~~-k-~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L 1594 (2158)
.. + .....+.... ..+.++|||+..+..+..++..|
T Consensus 357 rk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l 436 (644)
T 1z3i_X 357 KKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLC 436 (644)
T ss_dssp HHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHH
Confidence 00 0 0111222221 24678999999999887776544
Q ss_pred HhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCce---EEEecCcccc
Q 000114 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK---VCVMSSSMCW 1671 (2158)
Q Consensus 1595 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~---VLVaT~~la~ 1671 (2158)
. ..+..+..+||+++..+|..+++.|++|... +|++|.+++.
T Consensus 437 ~-----------------------------------~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~ 481 (644)
T 1z3i_X 437 R-----------------------------------NRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGC 481 (644)
T ss_dssp H-----------------------------------HHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCT
T ss_pred H-----------------------------------HCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccC
Confidence 1 1345688999999999999999999998764 8999999999
Q ss_pred ccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1672 GVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1672 Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
|+|++++.+|| +++.+.++..+.|++||++|.|..+...++.++...
T Consensus 482 Glnl~~a~~Vi----------~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 482 GLNLIGANRLV----------MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp TCCCTTEEEEE----------ECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CcccccCCEEE----------EECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999998 566778999999999999999977777777676665
No 150
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.83 E-value=6.6e-19 Score=236.09 Aligned_cols=211 Identities=16% Similarity=0.173 Sum_probs=140.4
Q ss_pred cceeEEEecccccccCCCCChHHHHHHHHHHHHhh------------------cCCCceEEEeccCCCChHHHHHHhccC
Q 000114 1463 QQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ------------------VENKIRIVALSTSLANAKDLGEWIGAT 1524 (2158)
Q Consensus 1463 ~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~------------------~~~~~riV~lSATl~n~~dl~~wl~~~ 1524 (2158)
.+-.++|+||+|.+.+..+..++....+....... .+...+++++|||+++.. +.. .
T Consensus 324 ~~~~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~-~~~--~-- 398 (664)
T 1c4o_A 324 PEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFE-LAH--S-- 398 (664)
T ss_dssp CTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHH-HHH--C--
T ss_pred hhccEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHH-HHh--h--
Confidence 34568999999987654444455444444332211 113578999999986432 221 0
Q ss_pred CCceEe--cCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCC
Q 000114 1525 SHGLFN--FPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDG 1602 (2158)
Q Consensus 1525 ~~~i~~--f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~ 1602 (2158)
..+.. ..+.....|. +.+..+. ... ......+......+.++||||+|++.|+.++..|..
T Consensus 399 -~~~~~~~~r~~~l~~p~-i~v~~~~-----~~~----~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~------ 461 (664)
T 1c4o_A 399 -GRVVEQIIRPTGLLDPL-VRVKPTE-----NQI----LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVE------ 461 (664)
T ss_dssp -SEEEEECSCTTCCCCCE-EEEECST-----THH----HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHH------
T ss_pred -hCeeeeeeccCCCCCCe-EEEeccc-----chH----HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh------
Confidence 11111 1121111221 2222221 111 122334444445788999999999999999876632
Q ss_pred cccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEE
Q 000114 1603 DQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV 1682 (2158)
Q Consensus 1603 ~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI 1682 (2158)
.+..+.++||+|+..+|..+++.|++|.++|||||+++++|+|+|.+.+||
T Consensus 462 -----------------------------~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI 512 (664)
T 1c4o_A 462 -----------------------------HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA 512 (664)
T ss_dssp -----------------------------TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEE
T ss_pred -----------------------------cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEE
Confidence 234588899999999999999999999999999999999999999988777
Q ss_pred ecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHH
Q 000114 1683 MGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2158)
Q Consensus 1683 ~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~ 1732 (2158)
.|+.. ....|.+..+|+||+|||||. +.|.|++++.......
T Consensus 513 ----~~d~d-~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 513 ----ILDAD-KEGFLRSERSLIQTIGRAARN---ARGEVWLYADRVSEAM 554 (664)
T ss_dssp ----ETTTT-SCSGGGSHHHHHHHHGGGTTS---TTCEEEEECSSCCHHH
T ss_pred ----EeCCc-ccCCCCCHHHHHHHHCccCcC---CCCEEEEEEcCCCHHH
Confidence 23322 123467899999999999996 4799999998765443
No 151
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.80 E-value=1.7e-17 Score=215.76 Aligned_cols=131 Identities=18% Similarity=0.108 Sum_probs=108.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|+ .|+++|..+++.++.|+ |+.|+||+|||++|.+|++..... +..+++++||+.||.|.+..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~---IaeakTGeGKTLvf~Lp~~L~aL~-----------G~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK---IAEMKTGEGKTLVATLAVALNALT-----------GKGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS---EEECCSTHHHHHHHHHHHHHHHTT-----------CSCCEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc---eeeccCCCchHHHHHHHHHHHHHh-----------CCCEEEEeCCHHHHHHHHHHH
Confidence 478 89999999999988875 999999999999999999654432 236999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhcc---CCCcccc---ccceEEeecccccc
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQ---LVKLLIIDEIHLLH 636 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~---~v~lIIiDEaH~l~ 636 (2158)
..++..+|++|+.++|+.+...+ ....++|+|+||+.+ |.+..+. .....++ .++++||||+|.++
T Consensus 141 ~~l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 141 GPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHTTTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999999998864432 245789999999996 6666653 1224456 89999999999875
No 152
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.78 E-value=2.3e-17 Score=221.00 Aligned_cols=210 Identities=17% Similarity=0.180 Sum_probs=138.3
Q ss_pred eeEEEecccccccCCCCChHHHHHHHHHHHHhh------------------cCCCceEEEeccCCCChHHHHHHhccCCC
Q 000114 1465 VSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ------------------VENKIRIVALSTSLANAKDLGEWIGATSH 1526 (2158)
Q Consensus 1465 v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~------------------~~~~~riV~lSATl~n~~dl~~wl~~~~~ 1526 (2158)
-.++|+||+|.+.+..+..++.+..+....... .+...+++++|||+++.. +.. ....
T Consensus 332 ~~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~-~~~---~~~~ 407 (661)
T 2d7d_A 332 DFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE-IEH---TDEM 407 (661)
T ss_dssp SCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEECSSCCHHH-HHH---CSSC
T ss_pred CcEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEEecCCChhH-HHh---hhCe
Confidence 358999999987654333444443333222111 123678999999986432 211 0110
Q ss_pred ceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccc
Q 000114 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2158)
Q Consensus 1527 ~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~ 1606 (2158)
.-....+.....|. +.+..+. ... ...+..+......+.++||||+|++.|+.++..|..
T Consensus 408 ~~~~~r~~~l~~p~-i~v~~~~-----~~~----~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~---------- 467 (661)
T 2d7d_A 408 VEQIIRPTGLLDPL-IDVRPIE-----GQI----DDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKE---------- 467 (661)
T ss_dssp EEECCCTTCCCCCE-EEEECST-----THH----HHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH----------
T ss_pred eeeeecccCCCCCe-EEEeccc-----chH----HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHh----------
Confidence 01112222222222 2222221 111 122344445545678999999999999999866632
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecce
Q 000114 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2158)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~ 1686 (2158)
.+..+.++||++++.+|..+++.|++|.++|||||+++++|+|+|.+.+||
T Consensus 468 -------------------------~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi---- 518 (661)
T 2d7d_A 468 -------------------------IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA---- 518 (661)
T ss_dssp -------------------------TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEE----
T ss_pred -------------------------cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEE----
Confidence 234578899999999999999999999999999999999999999988777
Q ss_pred eecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
.|+.. ....|.+..+|+||+|||||. ..|.|++++......
T Consensus 519 ~~d~d-~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~~ 559 (661)
T 2d7d_A 519 ILDAD-KEGFLRSERSLIQTIGRAARN---AEGRVIMYADKITKS 559 (661)
T ss_dssp ETTTT-CCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCHH
T ss_pred EeCcc-cccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCHH
Confidence 23321 122467899999999999995 589999999886543
No 153
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.78 E-value=2.5e-17 Score=220.71 Aligned_cols=122 Identities=18% Similarity=0.269 Sum_probs=101.1
Q ss_pred HHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCC
Q 000114 727 VVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMT 805 (2158)
Q Consensus 727 i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~ 805 (2158)
+.... .+.++||||+|++.++.++..|.+.+. .+.++||+|+
T Consensus 438 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~lh~~~~ 480 (661)
T 2d7d_A 438 IQARIERNERVLVTTLTKKMSEDLTDYLKEIGI-------------------------------------KVNYLHSEIK 480 (661)
T ss_dssp HHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTCC
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCC-------------------------------------CeEEEeCCCC
Confidence 44433 467999999999999999999987542 2566799999
Q ss_pred HHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 806 RGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 806 ~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
+.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+.+..++ +.|..+|+||+|||||. ..|.++++
T Consensus 481 ~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~----~d~d~~G~-p~s~~~~iQr~GRagR~---~~G~~i~~ 552 (661)
T 2d7d_A 481 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARN---AEGRVIMY 552 (661)
T ss_dssp HHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE----TTTTCCTT-TTSHHHHHHHHHTTTTS---TTCEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE----eCcccccC-CCCHHHHHHHhCcccCC---CCCEEEEE
Confidence 999999999999999999999999999999999999998 55422111 23889999999999996 47999999
Q ss_pred cCCCcHHH
Q 000114 886 TGHSELRY 893 (2158)
Q Consensus 886 ~~~~~~~~ 893 (2158)
++..+...
T Consensus 553 ~~~~~~~~ 560 (661)
T 2d7d_A 553 ADKITKSM 560 (661)
T ss_dssp CSSCCHHH
T ss_pred EeCCCHHH
Confidence 98876543
No 154
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.76 E-value=1.3e-16 Score=207.59 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=105.4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|+ .|+++|..+++.++.|+ |+.++||+|||++|.+|++..... +. .+++++||++||.|.++.+. .+...
T Consensus 77 G~-~Pt~VQ~~~ip~LlqG~---IaeakTGeGKTLvf~Lp~~L~aL~---G~--qv~VvTPTreLA~Qdae~m~-~l~~~ 146 (997)
T 2ipc_A 77 GM-RHFDVQLIGGAVLHEGK---IAEMKTGEGKTLVATLAVALNALT---GK--GVHVVTVNDYLARRDAEWMG-PVYRG 146 (997)
T ss_dssp CC-CCCHHHHHHHHHHHTTS---EEECCSTHHHHHHHHHHHHHHHTT---CS--CCEEEESSHHHHHHHHHHHH-HHHHT
T ss_pred CC-CCcHHHHhhcccccCCc---eeeccCCCchHHHHHHHHHHHHHh---CC--CEEEEeCCHHHHHHHHHHHH-HHHHh
Confidence 57 89999999999998865 899999999999999999644333 33 68999999999999999888 55566
Q ss_pred CCcEEEEEcCCcchhhh-cccCCcEEEeCHHHH-HHHHhhhh----cccccc---ceeEEEeccccccc
Q 000114 1418 LGMRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWK----QRKYVQ---QVSLFIIDELHLIG 1477 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~---~v~llIiDEaH~l~ 1477 (2158)
+|++|+.++|+.+...+ ....++|+|+||+.+ .++++... ....++ ++.++||||+|.++
T Consensus 147 lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred cCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 79999999998876533 334679999999998 56666532 123466 89999999999776
No 155
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.73 E-value=1e-16 Score=210.85 Aligned_cols=127 Identities=24% Similarity=0.229 Sum_probs=85.7
Q ss_pred CCCCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
.|| .++|+|.+++..+ +..+.++++.||||+|||++|++|++.. +.+++|++||++|+.|+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~ 68 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIY 68 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHH
Confidence 467 8999999987654 4556789999999999999999998753 138999999999999999
Q ss_pred HHHHhhcccCCcEEEEEeCCCcc--------------------------------------------------CHhhhcc
Q 000114 568 GNLSNRLQMYDVKVRELSGDQTL--------------------------------------------------TRQQIEE 597 (2158)
Q Consensus 568 ~~~~~~~~~~gi~v~~l~Gd~~~--------------------------------------------------~~~~~~~ 597 (2158)
+.+..+ ++++..+.|.... .......
T Consensus 69 ~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~ 144 (540)
T 2vl7_A 69 KNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKD 144 (540)
T ss_dssp HHHGGG----TCCEEEC---------------------------------------------------------CTTGGG
T ss_pred HHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhc
Confidence 888763 4555555542210 0111356
Q ss_pred ccEEEcchhHH-HHHHhcc-C---CCccccccceEEeecccccc
Q 000114 598 TQIIVTTPEKW-DIITRKS-G---DRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 598 ~~IiV~TPekl-d~l~r~~-~---~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+|+|+..+ +...++. . ....+....++||||||.+.
T Consensus 145 adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 145 KDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp CSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 79999999986 4333332 1 01134567899999999983
No 156
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=191.35 Aligned_cols=169 Identities=26% Similarity=0.327 Sum_probs=114.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH-HHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE-VVGNL 570 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q-~~~~~ 570 (2158)
+...|+++|.++++.++.+ .++++++|||+|||++|++++++.+...... ..+.++||++|+++|+.| +.+.+
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-----~~~~~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEG-KNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-----TCCCCEEEEESSHHHHHHHHHHTH
T ss_pred CCCCchHHHHHHHHHHhcC-CCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-----cCCCcEEEEECHHHHHHHHHHHHH
Confidence 3458999999999998876 5699999999999999999999877654211 124589999999999999 66667
Q ss_pred HhhcccCCcEEEEEeCCCccCH---hhhccccEEEcchhHHHHHHhccCC----CccccccceEEeecccccccCChhhH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIITRKSGD----RTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPekld~l~r~~~~----~~~l~~v~lIIiDEaH~l~d~rg~~l 643 (2158)
.++.. .++++..++|+..... .....++|+|+||+++......... ...+.++++|||||||++.+. ..+
T Consensus 104 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~--~~~ 180 (216)
T 3b6e_A 104 QPFLK-KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE--AVY 180 (216)
T ss_dssp HHHHT-TTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---------CH
T ss_pred HHHhc-cCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC--CcH
Confidence 66544 3788999999876543 2245789999999998544443321 135678999999999998642 224
Q ss_pred HHHHHHHHHHH-hhc---------cccccEEEEccc
Q 000114 644 ESIVARTVRQI-ETT---------KEHIRLVGLSAT 669 (2158)
Q Consensus 644 e~iv~r~~~~~-~~~---------~~~~riv~lSAT 669 (2158)
..++.+++... ... .+.+++|+||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 44444332211 111 157899999998
No 157
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.72 E-value=7.5e-17 Score=178.29 Aligned_cols=144 Identities=22% Similarity=0.395 Sum_probs=115.4
Q ss_pred cccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHH
Q 000114 697 PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (2158)
Q Consensus 697 pv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 776 (2158)
+..+.+.++.+... .++..+.++ +....++++||||++++.+..++..|...+
T Consensus 7 ~~~i~~~~~~~~~~---~K~~~L~~l-----l~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------------------- 59 (163)
T 2hjv_A 7 TRNIEHAVIQVREE---NKFSLLKDV-----LMTENPDSCIIFCRTKEHVNQLTDELDDLG------------------- 59 (163)
T ss_dssp CCCEEEEEEECCGG---GHHHHHHHH-----HHHHCCSSEEEECSSHHHHHHHHHHHHHTT-------------------
T ss_pred cccceEEEEECChH---HHHHHHHHH-----HHhcCCCcEEEEECCHHHHHHHHHHHHHcC-------------------
Confidence 33456666555432 233333322 233457799999999999999999887643
Q ss_pred HHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCcc
Q 000114 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (2158)
Q Consensus 777 l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~ 856 (2158)
..+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++.
T Consensus 60 ------------------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~----~~~p~--- 114 (163)
T 2hjv_A 60 ------------------YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN----YDLPL--- 114 (163)
T ss_dssp ------------------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE----SSCCS---
T ss_pred ------------------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE----eCCCC---
Confidence 34778899999999999999999999999999999999999999999999 66654
Q ss_pred ccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
++.+|+||+|||||.| ..|.++++++..+..++.++
T Consensus 115 ---~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~i 150 (163)
T 2hjv_A 115 ---EKESYVHRTGRTGRAG--NKGKAISFVTAFEKRFLADI 150 (163)
T ss_dssp ---SHHHHHHHTTTSSCTT--CCEEEEEEECGGGHHHHHHH
T ss_pred ---CHHHHHHhccccCcCC--CCceEEEEecHHHHHHHHHH
Confidence 7889999999999987 67999999998887776654
No 158
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=182.63 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=103.1
Q ss_pred HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHH
Q 000114 730 VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2158)
Q Consensus 730 ~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R 809 (2158)
....+++||||++++.+..++..|...+ .++..+||+|++.+|
T Consensus 31 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~~g~~~~~~R 73 (175)
T 2rb4_A 31 SITIGQAIIFCQTRRNAKWLTVEMIQDG-------------------------------------HQVSLLSGELTVEQR 73 (175)
T ss_dssp TSCCSEEEEECSCHHHHHHHHHHHHTTT-------------------------------------CCEEEECSSCCHHHH
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHcC-------------------------------------CcEEEEeCCCCHHHH
Confidence 3456799999999999999999887532 357889999999999
Q ss_pred HHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
..+++.|++|.++|||||+++++|+|+|++++||+++.|+++. .+.+..+|+||+|||||.| ..|.++++++..
T Consensus 74 ~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~----~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~ 147 (175)
T 2rb4_A 74 ASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQG----EEPDYETYLHRIGRTGRFG--KKGLAFNMIEVD 147 (175)
T ss_dssp HHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--C----CSCCHHHHHHHHCBC------CCEEEEEEECGG
T ss_pred HHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCcc----ccCCHHHHHHHhcccccCC--CCceEEEEEccc
Confidence 9999999999999999999999999999999999965554432 3469999999999999987 679999999998
Q ss_pred cHHHHHHh
Q 000114 890 ELRYYLSL 897 (2158)
Q Consensus 890 ~~~~y~~l 897 (2158)
+...+.++
T Consensus 148 ~~~~~~~i 155 (175)
T 2rb4_A 148 ELPSLMKI 155 (175)
T ss_dssp GHHHHHHH
T ss_pred hHHHHHHH
Confidence 87666543
No 159
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.71 E-value=9.9e-17 Score=185.16 Aligned_cols=119 Identities=24% Similarity=0.401 Sum_probs=104.1
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
....++++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~lhg~~~~~~ 69 (212)
T 3eaq_A 27 YVASPDRAMVFTRTKAETEEIAQGLLRLG-------------------------------------HPAQALHGDLSQGE 69 (212)
T ss_dssp HHHCCSCEEEECSSHHHHHHHHHHHHHHT-------------------------------------CCEEEECSSSCHHH
T ss_pred HhCCCCeEEEEeCCHHHHHHHHHHHHHcC-------------------------------------CCEEEEECCCCHHH
Confidence 34457899999999999999999987653 34678899999999
Q ss_pred HHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+|||||.| ..|.|+++++.
T Consensus 70 r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~----~~~p~------~~~~~~qr~GR~gR~g--~~g~~~~l~~~ 137 (212)
T 3eaq_A 70 RERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRLPD------RAEAYQHRSGRTGRAG--RGGRVVLLYGP 137 (212)
T ss_dssp HHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE----SSCCS------SHHHHHHHHTTBCCCC----BEEEEEECG
T ss_pred HHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE----CCCCc------CHHHHHHHhcccCCCC--CCCeEEEEEch
Confidence 999999999999999999999999999999999999 66664 7889999999999987 56999999999
Q ss_pred CcHHHHHH
Q 000114 889 SELRYYLS 896 (2158)
Q Consensus 889 ~~~~~y~~ 896 (2158)
.+...+..
T Consensus 138 ~~~~~~~~ 145 (212)
T 3eaq_A 138 RERRDVEA 145 (212)
T ss_dssp GGHHHHHH
T ss_pred hHHHHHHH
Confidence 88666554
No 160
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.70 E-value=2.3e-17 Score=199.60 Aligned_cols=153 Identities=18% Similarity=0.277 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
+|+++|.++++.++.+ .+.+++||||+|||+++++++...+... ..++||++|+++|+.|+.+++.+++
T Consensus 113 ~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHHC----------SSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHHHcC----------CCeEEEEECCHHHHHHHHHHHHHhc
Confidence 7999999999998887 4588899999999999998888776542 2389999999999999999999887
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~ 654 (2158)
...+..+..++|+...........+|+|+||+.+ .+.. ...+.++++||+||||++. ++.++.++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l---~~~~--~~~~~~~~~vIiDEaH~~~---~~~~~~il~------ 247 (282)
T 1rif_A 182 LFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTV---VKQP--KEWFSQFGMMMNDECHLAT---GKSISSIIS------ 247 (282)
T ss_dssp SCCGGGEEECSTTCSSTTCCCTTCSEEEECHHHH---TTSC--GGGGGGEEEEEEETGGGCC---HHHHHHHTT------
T ss_pred ccccceEEEEeCCCcchhhhccCCcEEEEchHHH---HhhH--HHHHhhCCEEEEECCccCC---cccHHHHHH------
Confidence 6666778888887665443346789999999853 3332 1457789999999999986 334444433
Q ss_pred hhccccccEEEEccccCCh
Q 000114 655 ETTKEHIRLVGLSATLPNY 673 (2158)
Q Consensus 655 ~~~~~~~riv~lSATlpn~ 673 (2158)
......++++||||+++.
T Consensus 248 -~~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 248 -GLNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp -TCTTCCEEEEECSSCCTT
T ss_pred -HhhcCCeEEEEeCCCCCc
Confidence 234578999999999864
No 161
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.70 E-value=5.1e-17 Score=188.17 Aligned_cols=167 Identities=22% Similarity=0.299 Sum_probs=114.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHH-HHHHHHHHhcC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKE-RYRDWEIKFGQ 1416 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q-~~~~~~~~f~~ 1416 (2158)
...|+|+|.++++.++.+ .++++++|||+|||+++.++++..+.... ...+.+++|++|+++|+.| +.+.+. .+..
T Consensus 31 ~~~l~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~~~ 108 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEG-KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ-PFLK 108 (216)
T ss_dssp CCCCCHHHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH-HHHT
T ss_pred CCCchHHHHHHHHHHhcC-CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH-HHhc
Confidence 458999999999999874 56999999999999999999988776532 1112389999999999999 555565 5544
Q ss_pred CCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhc----cccccceeEEEecccccccCCCCChHHHHHH
Q 000114 1417 GLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQ----RKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~----~~~l~~v~llIiDEaH~l~~~~g~~~e~~is 1489 (2158)
. +.++..++|+..... .....++|+|+||+++...+..... ...+.++++||+||||++.+ +..++.++.
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~--~~~~~~~~~ 185 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK--EAVYNNIMR 185 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---------CHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc--CCcHHHHHH
Confidence 3 678888988765432 2334679999999999887766432 13578899999999999863 234555544
Q ss_pred HHHHHH-hh---------cCCCceEEEeccC
Q 000114 1490 RMRYIA-SQ---------VENKIRIVALSTS 1510 (2158)
Q Consensus 1490 rl~~i~-~~---------~~~~~riV~lSAT 1510 (2158)
++.... .. .....++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 432211 10 0157899999998
No 162
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.69 E-value=5.9e-17 Score=180.66 Aligned_cols=114 Identities=22% Similarity=0.302 Sum_probs=100.9
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
.....+++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~hg~~~~~~ 69 (172)
T 1t5i_A 27 DVLEFNQVVIFVKSVQRCIALAQLLVEQN-------------------------------------FPAIAIHRGMPQEE 69 (172)
T ss_dssp HHSCCSSEEEECSSHHHHHHHHHHHHHTT-------------------------------------CCEEEECTTSCHHH
T ss_pred HhCCCCcEEEEECCHHHHHHHHHHHHhcC-------------------------------------CCEEEEECCCCHHH
Confidence 34457899999999999999999987643 34678899999999
Q ss_pred HHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. ++.+|+||+|||||.| ..|.++++++.
T Consensus 70 r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~----~d~p~------~~~~~~qr~GR~~R~g--~~g~~~~~~~~ 137 (172)
T 1t5i_A 70 RLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMPE------DSDTYLHRVARAGRFG--TKGLAITFVSD 137 (172)
T ss_dssp HHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSCCS------SHHHHHHHHHHHTGGG--CCCEEEEEECS
T ss_pred HHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE----ECCCC------CHHHHHHHhcccccCC--CCcEEEEEEcC
Confidence 999999999999999999999999999999999999 66664 7889999999999987 67999999987
Q ss_pred CcH
Q 000114 889 SEL 891 (2158)
Q Consensus 889 ~~~ 891 (2158)
.+.
T Consensus 138 ~~~ 140 (172)
T 1t5i_A 138 END 140 (172)
T ss_dssp HHH
T ss_pred hhH
Confidence 643
No 163
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.69 E-value=1.5e-16 Score=176.23 Aligned_cols=120 Identities=19% Similarity=0.374 Sum_probs=100.0
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
+....+++||||++++.+..++..|...+ .++..+||+|+..+
T Consensus 26 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~~~~~~~~~ 68 (165)
T 1fuk_A 26 DSISVTQAVIFCNTRRKVEELTTKLRNDK-------------------------------------FTVSAIYSDLPQQE 68 (165)
T ss_dssp HHTTCSCEEEEESSHHHHHHHHHHHHHTT-------------------------------------CCEEEECTTSCHHH
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHHHcC-------------------------------------CCEEEEECCCCHHH
Confidence 33457899999999999999999887632 34778899999999
Q ss_pred HHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. ++.+|+||+|||||.| ..|.++++++.
T Consensus 69 r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~----~~~p~------~~~~~~qr~GR~gR~g--~~g~~~~~~~~ 136 (165)
T 1fuk_A 69 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLPA------NKENYIHRIGRGGRFG--RKGVAINFVTN 136 (165)
T ss_dssp HHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSCCS------SGGGGGGSSCSCC-------CEEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE----eCCCC------CHHHHHHHhcccccCC--CCceEEEEEcc
Confidence 999999999999999999999999999999999999 55443 5668999999999987 67999999998
Q ss_pred CcHHHHHHh
Q 000114 889 SELRYYLSL 897 (2158)
Q Consensus 889 ~~~~~y~~l 897 (2158)
.+...+..+
T Consensus 137 ~~~~~~~~~ 145 (165)
T 1fuk_A 137 EDVGAMREL 145 (165)
T ss_dssp TTHHHHHHH
T ss_pred hHHHHHHHH
Confidence 887666543
No 164
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.69 E-value=2.8e-17 Score=193.08 Aligned_cols=200 Identities=22% Similarity=0.270 Sum_probs=135.8
Q ss_pred cccccccCCcccccccccCCC-------CCcccccCcceEEecCCCCCCCCCCCCcccccCCCChhhHhhcCCCCCCCHH
Q 000114 427 DTLAFQQGGLFMANRKCDLPE-------GSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRV 499 (2158)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~lp~-------~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~~i 499 (2158)
..++|++|+++++ .++.+|. ++.+...+.|+++. +......++..+......++| .+.....|+++
T Consensus 25 ~~~~~~~g~~~~~-~~~~l~~~~w~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~p-----~~~~~~~l~~~ 97 (237)
T 2fz4_A 25 AEIYYERGTIVVK-GDAHVPHAKFDSRSGTYRALAFRYRDII-EYFESNGIEFVDNAADPIPTP-----YFDAEISLRDY 97 (237)
T ss_dssp EEEEEETTEEEEE-SCSCCTTCEEETTTTEEEEEGGGHHHHH-HHHHHTTCCEEEESCCCCCCC-----CCCCCCCCCHH
T ss_pred eEEEEecceEEEe-ccccCCCceeccccchhhcchhhHHHHH-HHHHHcCCCccccccccCCCc-----cccCCCCcCHH
Confidence 4689999999985 6778887 55555555555443 211112222111222222332 22334589999
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCc
Q 000114 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (2158)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi 579 (2158)
|.+++..++.+ .++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.+ + ++
T Consensus 98 Q~~ai~~~~~~-~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~-~---~~ 158 (237)
T 2fz4_A 98 QEKALERWLVD-KRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGI-F---GE 158 (237)
T ss_dssp HHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGG-G---CG
T ss_pred HHHHHHHHHhC-CCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHh-C---CC
Confidence 99999988776 459999999999999998887653 12699999999999999999987 3 67
Q ss_pred E-EEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhcc
Q 000114 580 K-VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (2158)
Q Consensus 580 ~-v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~ 658 (2158)
+ +..++|+... ..+|+|+||+.+..... .....+++|||||+|++.+.. +..++. ..
T Consensus 159 ~~v~~~~g~~~~------~~~i~v~T~~~l~~~~~-----~~~~~~~llIiDEaH~l~~~~---~~~i~~--------~~ 216 (237)
T 2fz4_A 159 EYVGEFSGRIKE------LKPLTVSTYDSAYVNAE-----KLGNRFMLLIFDEVHHLPAES---YVQIAQ--------MS 216 (237)
T ss_dssp GGEEEESSSCBC------CCSEEEEEHHHHHHTHH-----HHTTTCSEEEEECSSCCCTTT---HHHHHH--------TC
T ss_pred CeEEEEeCCCCC------cCCEEEEeHHHHHhhHH-----HhcccCCEEEEECCccCCChH---HHHHHH--------hc
Confidence 7 8888887643 57899999997532222 122458999999999987532 333222 12
Q ss_pred ccccEEEEccccCChH
Q 000114 659 EHIRLVGLSATLPNYE 674 (2158)
Q Consensus 659 ~~~riv~lSATlpn~~ 674 (2158)
...++++||||+++.+
T Consensus 217 ~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 217 IAPFRLGLTATFERED 232 (237)
T ss_dssp CCSEEEEEEESCC---
T ss_pred cCCEEEEEecCCCCCC
Confidence 3678899999987543
No 165
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=185.43 Aligned_cols=170 Identities=15% Similarity=0.164 Sum_probs=125.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++++|.++++.+..+ ++++++||||||||+++.++++...........+++++++|+++|+.|+++.+...++...|.
T Consensus 61 p~~~~q~~~i~~i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 61 PVKKFESEILEAISQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp GGGGGHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred ChHHHHHHHHHHHhcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 5789999999999874 569999999999999999999887765333234589999999999999999998777655555
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~ 1500 (2158)
.++.-.... .......++|+|+||+++..+++. .+++++++|+||||..+ .........++.+.... .
T Consensus 140 ~~g~~~~~~--~~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~~----~~~~~~~~~l~~i~~~~-~ 207 (235)
T 3llm_A 140 SCGYSVRFE--SILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHERD----INTDFLLVVLRDVVQAY-P 207 (235)
T ss_dssp SEEEEETTE--EECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSCC----HHHHHHHHHHHHHHHHC-T
T ss_pred eEEEeechh--hccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccCC----cchHHHHHHHHHHHhhC-C
Confidence 554322111 111114568999999999877654 37899999999999742 22233334555555443 4
Q ss_pred CceEEEeccCCCChHHHHHHhccC
Q 000114 1501 KIRIVALSTSLANAKDLGEWIGAT 1524 (2158)
Q Consensus 1501 ~~riV~lSATl~n~~dl~~wl~~~ 1524 (2158)
+.|++++|||+++.. +++|++..
T Consensus 208 ~~~~il~SAT~~~~~-~~~~~~~~ 230 (235)
T 3llm_A 208 EVRIVLMSATIDTSM-FCEYFFNC 230 (235)
T ss_dssp TSEEEEEECSSCCHH-HHHHTTSC
T ss_pred CCeEEEEecCCCHHH-HHHHcCCC
Confidence 789999999998765 99998754
No 166
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.68 E-value=2.6e-16 Score=190.43 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++|+|.++++.++.+ .+.++++|||+|||+++.+++...+.. ..+ +++|++|+++|+.|++++++ ++....+.
T Consensus 113 ~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~--~~lil~Pt~~L~~q~~~~l~-~~~~~~~~ 186 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLEN--YEG--KILIIVPTTALTTQMADDFV-DYRLFSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHH--CSS--EEEEECSSHHHHHHHHHHHH-HHTSCCGG
T ss_pred CccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHHHc--CCC--eEEEEECCHHHHHHHHHHHH-Hhcccccc
Confidence 7999999999999875 558889999999999998888776654 233 89999999999999999998 55544456
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~ 1500 (2158)
.+..+.|+..........++|+|+||+.+. +. ....+++++++|+||||++.+ + .+..+...+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~---~~--~~~~~~~~~~vIiDEaH~~~~---~-------~~~~il~~~~~ 251 (282)
T 1rif_A 187 MIKKIGGGASKDDKYKNDAPVVVGTWQTVV---KQ--PKEWFSQFGMMMNDECHLATG---K-------SISSIISGLNN 251 (282)
T ss_dssp GEEECSTTCSSTTCCCTTCSEEEECHHHHT---TS--CGGGGGGEEEEEEETGGGCCH---H-------HHHHHTTTCTT
T ss_pred eEEEEeCCCcchhhhccCCcEEEEchHHHH---hh--HHHHHhhCCEEEEECCccCCc---c-------cHHHHHHHhhc
Confidence 777887776554444567899999998753 22 223578899999999999862 1 23344445555
Q ss_pred CceEEEeccCCCCh
Q 000114 1501 KIRIVALSTSLANA 1514 (2158)
Q Consensus 1501 ~~riV~lSATl~n~ 1514 (2158)
..++++||||+++.
T Consensus 252 ~~~~l~lSATp~~~ 265 (282)
T 1rif_A 252 CMFKFGLSGSLRDG 265 (282)
T ss_dssp CCEEEEECSSCCTT
T ss_pred CCeEEEEeCCCCCc
Confidence 89999999999874
No 167
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=178.64 Aligned_cols=116 Identities=19% Similarity=0.317 Sum_probs=88.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.++++||||++++.+..++..|...+ .++..+||+|++.+|..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g-------------------------------------~~~~~lhg~~~~~~r~~ 87 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEG-------------------------------------YACTSIHGDRSQRDREE 87 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTT-------------------------------------CCEEEEC--------CH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcC-------------------------------------CceEEEeCCCCHHHHHH
Confidence 47899999999999999999887643 34778899999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
+++.|++|.++|||||+++++|+|+|++++||+ ||++. ++.+|+||+|||||.| ..|.++++++..+.
T Consensus 88 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~----~d~p~------s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 88 ALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDLPS------DIEEYVHRIGRTGRVG--NLGLATSFFNERNI 155 (185)
T ss_dssp HHHHHHHTSSSEEEEEC------CCCSBSEEEE----SSCCS------SHHHHHHHHTTBCCTT--SCEEEEEEECGGGG
T ss_pred HHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE----eCCCC------CHHHHHHHccccCCCC--CCcEEEEEEchhhH
Confidence 999999999999999999999999999999999 66664 7889999999999987 67999999988775
Q ss_pred HHHHH
Q 000114 892 RYYLS 896 (2158)
Q Consensus 892 ~~y~~ 896 (2158)
..+.+
T Consensus 156 ~~~~~ 160 (185)
T 2jgn_A 156 NITKD 160 (185)
T ss_dssp GGHHH
T ss_pred HHHHH
Confidence 55443
No 168
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.66 E-value=1.3e-15 Score=200.37 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=85.9
Q ss_pred CCCCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000114 1338 GFKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f 1414 (2158)
|| .++|+|.+++..++ ..+.++++.||||+|||++|++|++.. .+ +++|++||++|+.|+++++.. +
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~--~~~~~~~t~~l~~q~~~~~~~-l 74 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KK--KVLIFTRTHSQLDSIYKNAKL-L 74 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TC--EEEEEESCHHHHHHHHHHHGG-G
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CC--cEEEEcCCHHHHHHHHHHHHh-c
Confidence 46 79999999877653 356789999999999999999998742 33 899999999999999988873 3
Q ss_pred cCCCCcEEEEEcCCcch--------------------------------------------------hhhcccCCcEEEe
Q 000114 1415 GQGLGMRVVELTGETAM--------------------------------------------------DLKLLEKGQIIIS 1444 (2158)
Q Consensus 1415 ~~~~g~~v~~ltG~~~~--------------------------------------------------~~~~l~~~~IIV~ 1444 (2158)
++++..+.|.... ..+....++|||+
T Consensus 75 ----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAM 150 (540)
T ss_dssp ----TCCEEEC---------------------------------------------------------CTTGGGCSEEEE
T ss_pred ----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEE
Confidence 3444444442100 0122456799999
Q ss_pred CHHHHHH-HHhhhhc----cccccceeEEEeccccccc
Q 000114 1445 TPEKWDA-LSRRWKQ----RKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1445 TPe~l~~-l~r~~~~----~~~l~~v~llIiDEaH~l~ 1477 (2158)
|+..+.+ ..++... ...+....++||||||.+.
T Consensus 151 n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 151 TYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp ETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred ChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999865 3332111 1134677899999999884
No 169
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=5.8e-16 Score=173.27 Aligned_cols=124 Identities=18% Similarity=0.245 Sum_probs=99.1
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHH
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~ 1652 (2158)
+.+++||||++++.|..++..|.. .+.++..+||+|++.+|..++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~g~~~~~~R~~~~ 77 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQ-----------------------------------DGHQVSLLSGELTVEQRASII 77 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHT-----------------------------------TTCCEEEECSSCCHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-----------------------------------cCCcEEEEeCCCCHHHHHHHH
Confidence 567899999999999999876632 245699999999999999999
Q ss_pred HHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHH
Q 000114 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2158)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~ 1732 (2158)
+.|++|.++|||||+++++|+|+|++.+|| .|+...+.....+..+|+||+|||||.| ..|.|++++...+..+
T Consensus 78 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi----~~d~p~~~~~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~ 151 (175)
T 2rb4_A 78 QRFRDGKEKVLITTNVCARGIDVKQVTIVV----NFDLPVKQGEEPDYETYLHRIGRTGRFG--KKGLAFNMIEVDELPS 151 (175)
T ss_dssp HHHHTTSCSEEEECCSCCTTTCCTTEEEEE----ESSCCC--CCSCCHHHHHHHHCBC------CCEEEEEEECGGGHHH
T ss_pred HHHHcCCCeEEEEecchhcCCCcccCCEEE----EeCCCCCccccCCHHHHHHHhcccccCC--CCceEEEEEccchHHH
Confidence 999999999999999999999999999999 2222111111278999999999999987 7899999999888766
Q ss_pred HHHHh
Q 000114 1733 YKKFL 1737 (2158)
Q Consensus 1733 ~~k~l 1737 (2158)
++++.
T Consensus 152 ~~~i~ 156 (175)
T 2rb4_A 152 LMKIQ 156 (175)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 170
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.66 E-value=7.2e-16 Score=170.35 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=105.3
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
...+++||||++++.+..++..|.. .+..+..+||+|++.+|..+
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~hg~~~~~~r~~~ 77 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDD-----------------------------------LGYPCDKIHGGMIQEDRFDV 77 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHH-----------------------------------cCCcEEEEeCCCCHHHHHHH
Confidence 4577999999999999999866632 34569999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+||+||.| ..|.|++++...+..
T Consensus 78 ~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi----------~~~~p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 78 MNEFKRGEYRYLVATDVAARGIDIENISLVI----------NYDLPLEKESYVHRTGRTGRAG--NKGKAISFVTAFEKR 145 (163)
T ss_dssp HHHHHTTSCSEEEECGGGTTTCCCSCCSEEE----------ESSCCSSHHHHHHHTTTSSCTT--CCEEEEEEECGGGHH
T ss_pred HHHHHcCCCeEEEECChhhcCCchhcCCEEE----------EeCCCCCHHHHHHhccccCcCC--CCceEEEEecHHHHH
Confidence 9999999999999999999999999999998 5677889999999999999987 689999999988877
Q ss_pred HHHHHh
Q 000114 1732 YYKKFL 1737 (2158)
Q Consensus 1732 ~~~k~l 1737 (2158)
+++++.
T Consensus 146 ~~~~i~ 151 (163)
T 2hjv_A 146 FLADIE 151 (163)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766553
No 171
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.66 E-value=5e-15 Score=195.66 Aligned_cols=343 Identities=18% Similarity=0.175 Sum_probs=208.1
Q ss_pred CCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
+++|.|.+++..++ ..+.++++.||||+|||++|++|++. . .. +++|++||++|+.|+.+++. .+...
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~---~~--~v~i~~pt~~l~~q~~~~~~-~l~~~ 73 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---V---KP--KVLFVVRTHNEFYPIYRDLT-KIREK 73 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---H---CS--EEEEEESSGGGHHHHHHHHT-TCCCS
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---C---CC--eEEEEcCCHHHHHHHHHHHH-HHhhh
Confidence 68999999887654 35677999999999999999999996 1 33 99999999999999998887 66655
Q ss_pred CCcEEEEEcCCcchh------------------------------------------------------hhcccCCcEEE
Q 000114 1418 LGMRVVELTGETAMD------------------------------------------------------LKLLEKGQIII 1443 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~------------------------------------------------------~~~l~~~~IIV 1443 (2158)
.++++..+.|....- .+....++|||
T Consensus 74 ~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV 153 (551)
T 3crv_A 74 RNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIA 153 (551)
T ss_dssp SCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEE
T ss_pred cCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEE
Confidence 678888888732210 11234679999
Q ss_pred eCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC-----------------------------------------
Q 000114 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP----------------------------------------- 1482 (2158)
Q Consensus 1444 ~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~----------------------------------------- 1482 (2158)
+|+..+.+...+-. ........++||||||.+.+ -..
T Consensus 154 ~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~ 231 (551)
T 3crv_A 154 LTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPD 231 (551)
T ss_dssp EETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred eCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999865432211 11224678999999998765 100
Q ss_pred ------------hH---HHHHH---------------------HH----HHHHh------------------------hc
Q 000114 1483 ------------VL---EVIVS---------------------RM----RYIAS------------------------QV 1498 (2158)
Q Consensus 1483 ------------~~---e~~is---------------------rl----~~i~~------------------------~~ 1498 (2158)
.. ..+.. .+ ..+.. .+
T Consensus 232 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~ 311 (551)
T 3crv_A 232 EKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLL 311 (551)
T ss_dssp SSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGG
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHH
Confidence 00 00110 00 00000 11
Q ss_pred CCC-ceEEEeccCCCChHHHHHHhccCCCc-----eEecCCCCcccccEEEEec-ccccchHHHHHhcChHHHHHHHHhH
Q 000114 1499 ENK-IRIVALSTSLANAKDLGEWIGATSHG-----LFNFPPGVRPVPLEIHIQG-VDITNFEARMQAMTKPTFTAIVQHA 1571 (2158)
Q Consensus 1499 ~~~-~riV~lSATl~n~~dl~~wl~~~~~~-----i~~f~~~~rpv~l~~~i~~-~~~~~~~~~~~~~~k~~~~~i~~~~ 1571 (2158)
... ..+|++|||+.....+.+.+|..... .+.+.+.+ +-...+.+.. .+.+ +..+...+.......+....
T Consensus 312 ~~~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~-~~~r~~~~~~~l~~~i~~l~ 389 (551)
T 3crv_A 312 NDNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSK-YDMRSDNMWKRYADYLLKIY 389 (551)
T ss_dssp GCTTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCC-TTTCCHHHHHHHHHHHHHHH
T ss_pred hccCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCc-cccCCHHHHHHHHHHHHHHH
Confidence 123 68999999999888888888876322 12233333 2223333321 1111 11000011122222222221
Q ss_pred -hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHH
Q 000114 1572 -KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2158)
Q Consensus 1572 -~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~ 1650 (2158)
...+.++||++|.+..+.++.. .+..+..-..+++ +..
T Consensus 390 ~~~~g~~lvlF~Sy~~l~~v~~~--------------------------------------~~~~v~~q~~~~~---~~~ 428 (551)
T 3crv_A 390 FQAKANVLVVFPSYEIMDRVMSR--------------------------------------ISLPKYVESEDSS---VED 428 (551)
T ss_dssp HHCSSEEEEEESCHHHHHHHHTT--------------------------------------CCSSEEECCSSCC---HHH
T ss_pred HhCCCCEEEEecCHHHHHHHHHh--------------------------------------cCCcEEEcCCCCC---HHH
Confidence 2356799999999988776620 1122333233444 345
Q ss_pred HHHHHHcCCceEEEec--CccccccCCC---c---cEEEEecceeecC-------------CCCc--C-cCC---CHHHH
Q 000114 1651 VSALFEAGKIKVCVMS--SSMCWGVPLT---A---HLVVVMGTQYYDG-------------QENA--H-TDY---PVTDL 1703 (2158)
Q Consensus 1651 v~~~F~~g~i~VLVaT--~~la~Gvdlp---~---~~vVI~gt~~yd~-------------~~~~--~-~~~---s~~~~ 1703 (2158)
+++.|+.+.-.||+|| ..+..|||+| + ..|||.|.++-.+ ..+. . ..| -+..+
T Consensus 429 ~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l 508 (551)
T 3crv_A 429 LYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTI 508 (551)
T ss_dssp HHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 6777754344899998 5899999999 3 5677777655332 1011 0 112 35667
Q ss_pred HHhhccCCCCCCCCceEEEEEecCChHHHHHHHhh
Q 000114 1704 LQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1704 lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
.|-+||+-|.. +..|.++++-..-....|.+.+.
T Consensus 509 ~Qa~GRlIR~~-~D~G~v~llD~R~~~~~~~~~~~ 542 (551)
T 3crv_A 509 KQAIGRAIRDV-NDKCNVWLLDKRFESLYWKKNLK 542 (551)
T ss_dssp HHHHHTTCCST-TCEEEEEEESGGGGSHHHHHHTT
T ss_pred HHHhccCccCC-CccEEEEEeehhcccchhhhhce
Confidence 79999999975 45787777655555556666654
No 172
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.66 E-value=5.4e-15 Score=195.31 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+++|.|.+++..+ +..+.++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------------CCeEEEEcCCHHHHHHHHHHHH
Confidence 6899999977754 4456789999999999999999999971 2389999999999999999998
Q ss_pred hhcccCCcEEEEEeCCCccC------------------------------------------------------Hhhhcc
Q 000114 572 NRLQMYDVKVRELSGDQTLT------------------------------------------------------RQQIEE 597 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~------------------------------------------------------~~~~~~ 597 (2158)
.+....++++..+.|..+.- +.....
T Consensus 69 ~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ 148 (551)
T 3crv_A 69 KIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYK 148 (551)
T ss_dssp TCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGG
T ss_pred HHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhc
Confidence 87666688888888732210 111347
Q ss_pred ccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc
Q 000114 598 TQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 598 ~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
++|||+|+..+ +...+... .......++||||||.+.+
T Consensus 149 adIVV~~~~~l~~~~~~~~~--~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 149 ADVIALTYPYFFIDRYREFI--DIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CSEEEEETHHHHCHHHHTTS--CCCSTTEEEEETTGGGGGG
T ss_pred CCEEEeCchHhcCHHHHHhc--CCCcCCeEEEEecccchHH
Confidence 89999999997 44444431 1224567899999998765
No 173
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.64 E-value=7.4e-16 Score=186.05 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=98.9
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
....++++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 24 ~~~~~~~~LVF~~t~~~~~~l~~~L~~~g-------------------------------------~~~~~lhg~l~~~~ 66 (300)
T 3i32_A 24 YVASPDRAMVFTRTKAETEEIAQGLLRLG-------------------------------------HPAQALHGDMSQGE 66 (300)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHTTT-------------------------------------CCEEEECSCCCTHH
T ss_pred HhcCCCCEEEEECCHHHHHHHHHHHHhCC-------------------------------------CCEEEEeCCCCHHH
Confidence 33447899999999999999998886532 45778899999999
Q ss_pred HHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
|..+++.|++|.++|||||+++++|+|+|++++||+++.|. +..+|+||+|||||.| ..|.|+++++.
T Consensus 67 r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~----------s~~~y~Qr~GRagR~g--~~G~~i~l~~~ 134 (300)
T 3i32_A 67 RERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPD----------RAEAYQHRSGRTGRAG--RGGRVVLLYGP 134 (300)
T ss_dssp HHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCS----------STTHHHHHHTCCC-------CEEEEEECS
T ss_pred HHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCC----------CHHHHHHHccCcCcCC--CCceEEEEeCh
Confidence 99999999999999999999999999999999999944443 5558999999999987 56999999999
Q ss_pred CcHHHHHH
Q 000114 889 SELRYYLS 896 (2158)
Q Consensus 889 ~~~~~y~~ 896 (2158)
.+...+..
T Consensus 135 ~e~~~~~~ 142 (300)
T 3i32_A 135 RERRDVEA 142 (300)
T ss_dssp STHHHHHH
T ss_pred HHHHHHHH
Confidence 88766554
No 174
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=178.93 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|.++++.+..+ ++++++||||||||.++.++++........ ..+.++++++|+++|+.|+++++...+
T Consensus 61 p~~~~q~~~i~~i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 61 PVKKFESEILEAISQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp GGGGGHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHhcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchHHHHHHHHHHHHHh
Confidence 5789999999988766 569999999999999999998887655321 134589999999999999999998765
Q ss_pred c-cCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHH
Q 000114 575 Q-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (2158)
Q Consensus 575 ~-~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~ 653 (2158)
. ..|..++.-...... .....++|+|+||+++....+. .++++++|||||||.+ +.........+...
T Consensus 134 ~~~~~~~~g~~~~~~~~--~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~----~~~~~~~~~~l~~i 202 (235)
T 3llm_A 134 GEEPGKSCGYSVRFESI--LPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHER----DINTDFLLVVLRDV 202 (235)
T ss_dssp TCCTTSSEEEEETTEEE--CCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSC----CHHHHHHHHHHHHH
T ss_pred ccccCceEEEeechhhc--cCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccC----CcchHHHHHHHHHH
Confidence 4 334445433222111 1124688999999997333332 3678999999999974 22222222222222
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 654 IETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
.. ..++.|++++|||+++.. +++|+...
T Consensus 203 ~~-~~~~~~~il~SAT~~~~~-~~~~~~~~ 230 (235)
T 3llm_A 203 VQ-AYPEVRIVLMSATIDTSM-FCEYFFNC 230 (235)
T ss_dssp HH-HCTTSEEEEEECSSCCHH-HHHHTTSC
T ss_pred Hh-hCCCCeEEEEecCCCHHH-HHHHcCCC
Confidence 22 235789999999998754 88888643
No 175
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.64 E-value=1.3e-15 Score=175.68 Aligned_cols=118 Identities=20% Similarity=0.289 Sum_probs=103.1
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+++++||||++++.++.++..|.. .+.++..+||+|++.+|..+
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~lhg~~~~~~r~~~ 73 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLR-----------------------------------LGHPAQALHGDLSQGERERV 73 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHH-----------------------------------HTCCEEEECSSSCHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHH-----------------------------------cCCCEEEEECCCCHHHHHHH
Confidence 5678999999999999988866522 35679999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|.|++++...+..
T Consensus 74 ~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi----------~~~~p~~~~~~~qr~GR~gR~g--~~g~~~~l~~~~~~~ 141 (212)
T 3eaq_A 74 LGAFRQGEVRVLVATDVAARGLDIPQVDLVV----------HYRLPDRAEAYQHRSGRTGRAG--RGGRVVLLYGPRERR 141 (212)
T ss_dssp HHHHHSSSCCEEEECTTTTCSSSCCCBSEEE----------ESSCCSSHHHHHHHHTTBCCCC----BEEEEEECGGGHH
T ss_pred HHHHHCCCCeEEEecChhhcCCCCccCcEEE----------ECCCCcCHHHHHHHhcccCCCC--CCCeEEEEEchhHHH
Confidence 9999999999999999999999999999999 5677889999999999999987 679999999988766
Q ss_pred HHHHH
Q 000114 1732 YYKKF 1736 (2158)
Q Consensus 1732 ~~~k~ 1736 (2158)
+++.+
T Consensus 142 ~~~~i 146 (212)
T 3eaq_A 142 DVEAL 146 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 176
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.63 E-value=6.9e-16 Score=172.01 Aligned_cols=115 Identities=13% Similarity=0.106 Sum_probs=100.8
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+.+++||||++++.|..++..|.. .+.++..+||+|++.+|..+
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~hg~~~~~~r~~~ 73 (172)
T 1t5i_A 29 LEFNQVVIFVKSVQRCIALAQLLVE-----------------------------------QNFPAIAIHRGMPQEERLSR 73 (172)
T ss_dssp SCCSSEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHh-----------------------------------cCCCEEEEECCCCHHHHHHH
Confidence 4567999999999999999876632 24568999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||.| ..|.|++++.+.+..
T Consensus 74 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi----------~~d~p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~ 141 (172)
T 1t5i_A 74 YQQFKDFQRRILVATNLFGRGMDIERVNIAF----------NYDMPEDSDTYLHRVARAGRFG--TKGLAITFVSDENDA 141 (172)
T ss_dssp HHHHHTTSCSEEEESSCCSTTCCGGGCSEEE----------ESSCCSSHHHHHHHHHHHTGGG--CCCEEEEEECSHHHH
T ss_pred HHHHHCCCCcEEEECCchhcCcchhhCCEEE----------EECCCCCHHHHHHHhcccccCC--CCcEEEEEEcChhHH
Confidence 9999999999999999999999999999999 5677889999999999999987 689999999876443
Q ss_pred HH
Q 000114 1732 YY 1733 (2158)
Q Consensus 1732 ~~ 1733 (2158)
.+
T Consensus 142 ~~ 143 (172)
T 1t5i_A 142 KI 143 (172)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 177
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=171.69 Aligned_cols=108 Identities=20% Similarity=0.328 Sum_probs=95.0
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
++++||||+++..+..++..|...+ ..+..+||+|++.+|..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g-------------------------------------~~~~~lhg~~~~~~R~~~ 96 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG-------------------------------------VEAVAIHGGKDQEERTKA 96 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT-------------------------------------CCEEEECTTSCHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------------------------------------CcEEEEeCCCCHHHHHHH
Confidence 5689999999999999999987654 246678999999999999
Q ss_pred HHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
++.|++|.++|||||+++++|+|+|++++||+ ||++. ++.+|+||+|||||.| ..|.++++++..
T Consensus 97 l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d~p~------~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 97 IEAFREGKKDVLVATDVASKGLDFPAIQHVIN----YDMPE------EIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp HHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE----SSCCS------SHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred HHHHhcCCCEEEEEcCchhcCCCcccCCEEEE----eCCCC------CHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 99999999999999999999999999999999 66664 7889999999999987 579999998875
No 178
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.62 E-value=1.2e-15 Score=168.87 Aligned_cols=118 Identities=13% Similarity=0.230 Sum_probs=99.8
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+.+++||||++++.|..++..|.. .+.++..+||+|+..+|..+
T Consensus 28 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~~~~~~~~r~~~ 72 (165)
T 1fuk_A 28 ISVTQAVIFCNTRRKVEELTTKLRN-----------------------------------DKFTVSAIYSDLPQQERDTI 72 (165)
T ss_dssp TTCSCEEEEESSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHH-----------------------------------cCCCEEEEECCCCHHHHHHH
Confidence 3568899999999999998866632 24568999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||.| ..|.|++++...+..
T Consensus 73 ~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi----------~~~~p~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 73 MKEFRSGSSRILISTDLLARGIDVQQVSLVI----------NYDLPANKENYIHRIGRGGRFG--RKGVAINFVTNEDVG 140 (165)
T ss_dssp HHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE----------ESSCCSSGGGGGGSSCSCC-------CEEEEEEETTTHH
T ss_pred HHHHHcCCCEEEEEcChhhcCCCcccCCEEE----------EeCCCCCHHHHHHHhcccccCC--CCceEEEEEcchHHH
Confidence 9999999999999999999999999999998 5667889999999999999987 789999999988776
Q ss_pred HHHHH
Q 000114 1732 YYKKF 1736 (2158)
Q Consensus 1732 ~~~k~ 1736 (2158)
.+.++
T Consensus 141 ~~~~~ 145 (165)
T 1fuk_A 141 AMREL 145 (165)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 179
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=171.92 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=89.5
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+++++||||++++.|..++..|.. .+.++..+||+|+..+|..+
T Consensus 44 ~~~~k~lVF~~~~~~~~~l~~~L~~-----------------------------------~g~~~~~lhg~~~~~~r~~~ 88 (185)
T 2jgn_A 44 GKDSLTLVFVETKKGADSLEDFLYH-----------------------------------EGYACTSIHGDRSQRDREEA 88 (185)
T ss_dssp -CCSCEEEEESCHHHHHHHHHHHHH-----------------------------------TTCCEEEEC--------CHH
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHH-----------------------------------cCCceEEEeCCCCHHHHHHH
Confidence 4678899999999999999866622 24569999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.++.+|+||+|||||.| ..|.|++++...+..
T Consensus 89 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI----------~~d~p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 89 LHQFRSGKSPILVATAVAARGLDISNVKHVI----------NFDLPSDIEEYVHRIGRTGRVG--NLGLATSFFNERNIN 156 (185)
T ss_dssp HHHHHHTSSSEEEEEC------CCCSBSEEE----------ESSCCSSHHHHHHHHTTBCCTT--SCEEEEEEECGGGGG
T ss_pred HHHHHcCCCeEEEEcChhhcCCCcccCCEEE----------EeCCCCCHHHHHHHccccCCCC--CCcEEEEEEchhhHH
Confidence 9999999999999999999999999999999 5667789999999999999987 689999999887765
Q ss_pred HHHHHh
Q 000114 1732 YYKKFL 1737 (2158)
Q Consensus 1732 ~~~k~l 1737 (2158)
.++++.
T Consensus 157 ~~~~l~ 162 (185)
T 2jgn_A 157 ITKDLL 162 (185)
T ss_dssp GHHHHH
T ss_pred HHHHHH
Confidence 555443
No 180
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.57 E-value=8.5e-15 Score=165.82 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=95.0
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHH
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~ 1652 (2158)
.++++||||++++.+..++..|.. .+..+..+||+|++.+|..++
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~g~~~~~lhg~~~~~~R~~~l 97 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLL-----------------------------------KGVEAVAIHGGKDQEERTKAI 97 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHH-----------------------------------HTCCEEEECTTSCHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-----------------------------------cCCcEEEEeCCCCHHHHHHHH
Confidence 356899999999999998866621 245689999999999999999
Q ss_pred HHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
+.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||.| ..|.|++++...
T Consensus 98 ~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI----------~~d~p~~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 98 EAFREGKKDVLVATDVASKGLDFPAIQHVI----------NYDMPEEIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp HHHHHTSCSEEEECHHHHTTCCCCCCSEEE----------ESSCCSSHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred HHHhcCCCEEEEEcCchhcCCCcccCCEEE----------EeCCCCCHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 999999999999999999999999999999 5667889999999999999987 678999998875
No 181
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.57 E-value=8.1e-15 Score=176.98 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=100.0
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
..++++||||++++.++.++..|.. .+..+..+||+|++.+|..+
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~-----------------------------------~g~~~~~lhg~l~~~~r~~~ 70 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLR-----------------------------------LGHPAQALHGDMSQGERERV 70 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECSCCCTHHHHHH
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHh-----------------------------------CCCCEEEEeCCCCHHHHHHH
Confidence 4578999999999999988866632 24568999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|.|++++...+..
T Consensus 71 ~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI----------~~d~p~s~~~y~Qr~GRagR~g--~~G~~i~l~~~~e~~ 138 (300)
T 3i32_A 71 MGAFRQGEVRVLVATDVAARGLDIPQVDLVV----------HYRMPDRAEAYQHRSGRTGRAG--RGGRVVLLYGPRERR 138 (300)
T ss_dssp HHHHHHTSCCEEEECSTTTCSTTCCCCSEEE----------ESSCCSSTTHHHHHHTCCC-------CEEEEEECSSTHH
T ss_pred HHHhhcCCceEEEEechhhcCccccceeEEE----------EcCCCCCHHHHHHHccCcCcCC--CCceEEEEeChHHHH
Confidence 9999999999999999999999999999999 5667888999999999999987 679999999988766
Q ss_pred HHHHH
Q 000114 1732 YYKKF 1736 (2158)
Q Consensus 1732 ~~~k~ 1736 (2158)
+++.+
T Consensus 139 ~~~~i 143 (300)
T 3i32_A 139 DVEAL 143 (300)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 182
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.34 E-value=2.3e-16 Score=175.57 Aligned_cols=115 Identities=20% Similarity=0.290 Sum_probs=99.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.++++||||++++.+..++..|...+ .++..+||+|++.+|..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~~g~~~~~~r~~ 71 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAG-------------------------------------INNCYLEGEMVQGKRNE 71 (170)
Confidence 46789999999999999998887643 24567799999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
+++.|++|.++|||||+++++|+|+|++++||+++.|+ ++.+|+||+|||||.| ..|.++++++..+.
T Consensus 72 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~----------~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 72 AIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPR----------SGDTYLHRIGRTARAG--RKGTAISLVEAHDH 139 (170)
Confidence 99999999999999999999999999999999944443 5567999999999987 67999999988776
Q ss_pred HHHH
Q 000114 892 RYYL 895 (2158)
Q Consensus 892 ~~y~ 895 (2158)
..+.
T Consensus 140 ~~~~ 143 (170)
T 2yjt_D 140 LLLG 143 (170)
Confidence 5544
No 183
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.52 E-value=3.3e-13 Score=179.43 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
.++|.|.+.+..++ ..+.++++.||||+|||++|++|++..+... +. +++|++||++|+.|+.+++. ++...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~--kvli~t~T~~l~~Qi~~el~-~l~~~ 77 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KL--KVLYLVRTNSQEEQVIKELR-SLSST 77 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TC--EEEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CC--eEEEECCCHHHHHHHHHHHH-HHhhc
Confidence 57999999988654 3467799999999999999999999887652 33 99999999999999999988 45433
Q ss_pred CCcEEEEEcC
Q 000114 1418 LGMRVVELTG 1427 (2158)
Q Consensus 1418 ~g~~v~~ltG 1427 (2158)
.++++..++|
T Consensus 78 ~~~~~~~l~g 87 (620)
T 4a15_A 78 MKIRAIPMQG 87 (620)
T ss_dssp SCCCEEECCC
T ss_pred cCeEEEEEEC
Confidence 3556655554
No 184
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.52 E-value=4.3e-14 Score=165.95 Aligned_cols=140 Identities=22% Similarity=0.245 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
..++++|.+++..++.++ ++++++|||+|||.++..++... ++ +++|++|+++|+.|+++.+.+ | +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~-~~ll~~~tG~GKT~~a~~~~~~~------~~--~~liv~P~~~L~~q~~~~~~~-~----~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL------ST--PTLIVVPTLALAEQWKERLGI-F----G 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS-EEEEEESSSTTHHHHHHHHHHHS------CS--CEEEEESSHHHHHHHHHHHGG-G----C
T ss_pred CCcCHHHHHHHHHHHhCC-CEEEEeCCCCCHHHHHHHHHHHc------CC--CEEEEeCCHHHHHHHHHHHHh-C----C
Confidence 479999999999988754 59999999999999998777642 33 799999999999999988874 5 5
Q ss_pred cE-EEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhc
Q 000114 1420 MR-VVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2158)
Q Consensus 1420 ~~-v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~ 1498 (2158)
.+ +..++|+.. ...+|+|+||+.+...... ...++++|||||+|++.+.. ++.+ ...+
T Consensus 158 ~~~v~~~~g~~~------~~~~i~v~T~~~l~~~~~~-----~~~~~~llIiDEaH~l~~~~---~~~i-------~~~~ 216 (237)
T 2fz4_A 158 EEYVGEFSGRIK------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAES---YVQI-------AQMS 216 (237)
T ss_dssp GGGEEEESSSCB------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTTT---HHHH-------HHTC
T ss_pred CCeEEEEeCCCC------CcCCEEEEeHHHHHhhHHH-----hcccCCEEEEECCccCCChH---HHHH-------HHhc
Confidence 67 888888764 2568999999987644332 12468999999999996532 3322 2222
Q ss_pred CCCceEEEeccCCCChH
Q 000114 1499 ENKIRIVALSTSLANAK 1515 (2158)
Q Consensus 1499 ~~~~riV~lSATl~n~~ 1515 (2158)
...++++||||+.+.+
T Consensus 217 -~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 217 -IAPFRLGLTATFERED 232 (237)
T ss_dssp -CCSEEEEEEESCC---
T ss_pred -cCCEEEEEecCCCCCC
Confidence 3678899999997653
No 185
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.52 E-value=2.4e-13 Score=180.67 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+++|.|.+.+..+ +..+.++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------~~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----------KLKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------CCeEEEECCCHHHHHHHHHHHH
Confidence 5799999998754 45567899999999999999999999987642 2489999999999999999998
Q ss_pred hhcccCCcEEEEEeC
Q 000114 572 NRLQMYDVKVRELSG 586 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~G 586 (2158)
.+....++++..++|
T Consensus 73 ~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 73 SLSSTMKIRAIPMQG 87 (620)
T ss_dssp HHHHHSCCCEEECCC
T ss_pred HHhhccCeEEEEEEC
Confidence 866555666666655
No 186
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.26 E-value=1.3e-15 Score=169.60 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=101.3
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+++++||||++++.|..++..|.. .+.++..+||+|+..+|..+
T Consensus 28 ~~~~~~iVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~g~~~~~~r~~~ 72 (170)
T 2yjt_D 28 PEATRSIVFVRKRERVHELANWLRE-----------------------------------AGINNCYLEGEMVQGKRNEA 72 (170)
Confidence 3467899999999999888865521 24568899999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||.| ..|.|++++...+..
T Consensus 73 ~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi----------~~~~p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 73 IKRLTEGRVNVLVATDVAARGIDIPDVSHVF----------NFDMPRSGDTYLHRIGRTARAG--RKGTAISLVEAHDHL 140 (170)
Confidence 9999999999999999999999999999999 5677889999999999999986 689999998877655
Q ss_pred HHHHH
Q 000114 1732 YYKKF 1736 (2158)
Q Consensus 1732 ~~~k~ 1736 (2158)
+++++
T Consensus 141 ~~~~~ 145 (170)
T 2yjt_D 141 LLGKV 145 (170)
Confidence 54433
No 187
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.11 E-value=2e-10 Score=137.02 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=81.5
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHH-hhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDT-ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~ 810 (2158)
.+.++||||+++..+..++..|... +. .+..+||+++..+|.
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~g~-------------------------------------~~~~l~G~~~~~~R~ 153 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKELNT-------------------------------------EVPFLYGELSKKERD 153 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHCS-------------------------------------CCCEECTTSCHHHHH
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhcCC-------------------------------------cEEEEECCCCHHHHH
Confidence 4789999999999999988888763 32 245679999999999
Q ss_pred HHHHHHhCC-Cce-EEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 811 LVEDLFGDG-HVQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 811 ~v~~~F~~g-~i~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
.+++.|++| .++ +|+||.++++|+|++++++||+++.+|+|. .+.|++||++|.|......++.+...
T Consensus 154 ~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~----------~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 154 DIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPA----------VEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp HHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTT----------TC--------------CCEEEEEEET
T ss_pred HHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChh----------HHHHHHHhccccCCCCceEEEEEeeC
Confidence 999999998 777 789999999999999999999977777776 49999999999986655556666665
Q ss_pred Cc
Q 000114 889 SE 890 (2158)
Q Consensus 889 ~~ 890 (2158)
..
T Consensus 224 ~T 225 (271)
T 1z5z_A 224 GT 225 (271)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 188
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.02 E-value=6.6e-10 Score=132.57 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=81.6
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
..+.++||||+++..+..++..|. ...+..+..+||+++..+|..+
T Consensus 110 ~~~~kvlIFs~~~~~~~~l~~~L~----------------------------------~~~g~~~~~l~G~~~~~~R~~~ 155 (271)
T 1z5z_A 110 DEGDKIAIFTQFVDMGKIIRNIIE----------------------------------KELNTEVPFLYGELSKKERDDI 155 (271)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHH----------------------------------HHHCSCCCEECTTSCHHHHHHH
T ss_pred hCCCeEEEEeccHHHHHHHHHHHH----------------------------------HhcCCcEEEEECCCCHHHHHHH
Confidence 568899999999998877775442 2235568889999999999999
Q ss_pred HHHHHcC-Cce-EEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1652 SALFEAG-KIK-VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1652 ~~~F~~g-~i~-VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
++.|++| .++ +|+||+++++|+|++++.+|| +++.|.++..|.|++||++|.|..+...++.++...
T Consensus 156 i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI----------~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 156 ISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----------HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp HHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEE----------ECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred HHHhcCCCCCCEEEEehhhhcCCcCcccCCEEE----------EECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999 777 799999999999999988888 566777899999999999999966666666666554
No 189
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.87 E-value=1.2e-05 Score=107.00 Aligned_cols=145 Identities=18% Similarity=0.254 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHcCCCcEEEEccCCCchH--HHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 497 NRVQSRVYKSALSSADNILLCAPTGAGKT--NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 497 ~~iQ~~~i~~~l~~~~nvlv~APTGsGKT--~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
++.|.++++.++.+ ..++++||+|+||| .+++++++..+... .+.++++++||..+|.++.+.+....
T Consensus 151 ~~~Q~~Ai~~~l~~-~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~---------~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLAALIQMADG---------ERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTB-SEEEEECCTTSTHHHHHHHHHHHHHHTCSS---------CCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcC-CCEEEEeCCCCCHHHHHHHHHHHHHHhhhc---------CCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 78999999998865 56999999999999 55666666543211 23579999999999999988877655
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~ 654 (2158)
..+++...... ........ -..++-.+|+... + +.... .. ..+++|||||++++. .+.++.++.
T Consensus 221 ~~l~l~~~~~~-~~~~~~~T--ih~ll~~~~~~~~-~-~~~~~-~~-l~~d~lIIDEAsml~---~~~~~~Ll~------ 284 (608)
T 1w36_D 221 RQLPLTDEQKK-RIPEDAST--LHRLLGAQPGSQR-L-RHHAG-NP-LHLDVLVVDEASMID---LPMMSRLID------ 284 (608)
T ss_dssp HHSSCCSCCCC-SCSCCCBT--TTSCC-------------CTT-SC-CSCSEEEECSGGGCB---HHHHHHHHH------
T ss_pred hcCCCCHHHHh-ccchhhhh--hHhhhccCCCchH-H-HhccC-CC-CCCCEEEEechhhCC---HHHHHHHHH------
Confidence 44443211100 00000000 0112223343211 1 11111 11 268999999999763 223333332
Q ss_pred hhccccccEEEEcc
Q 000114 655 ETTKEHIRLVGLSA 668 (2158)
Q Consensus 655 ~~~~~~~riv~lSA 668 (2158)
..+...|+|++.-
T Consensus 285 -~l~~~~~liLvGD 297 (608)
T 1w36_D 285 -ALPDHARVIFLGD 297 (608)
T ss_dssp -TCCTTCEEEEEEC
T ss_pred -hCCCCCEEEEEcc
Confidence 2355677777643
No 190
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.70 E-value=6.2e-05 Score=100.01 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHhcCCCcEEEEccCCchhH--HHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKT--ICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1343 ~~iQ~q~~~~l~~~~~nvli~ApTGSGKT--l~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
++.|.+++..++. +..+++.||+||||| +.+.++.+..+.. ..+.++++++||..++.++.+.+...... +++
T Consensus 151 ~~~Q~~Ai~~~l~-~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~~~~~-l~l 225 (608)
T 1w36_D 151 INWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGKALRQ-LPL 225 (608)
T ss_dssp CCHHHHHHHHHHT-BSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTHHHHH-SSC
T ss_pred CHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHHHHhc-CCC
Confidence 7899999999886 566999999999999 5566666654422 22238999999999999988776532221 122
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~ 1500 (2158)
..... .........+ ..++-.+|+... ++.. ......++++||||++++.. ..+..+...++.
T Consensus 226 ~~~~~-~~~~~~~~Ti--h~ll~~~~~~~~--~~~~--~~~~l~~d~lIIDEAsml~~----------~~~~~Ll~~l~~ 288 (608)
T 1w36_D 226 TDEQK-KRIPEDASTL--HRLLGAQPGSQR--LRHH--AGNPLHLDVLVVDEASMIDL----------PMMSRLIDALPD 288 (608)
T ss_dssp CSCCC-CSCSCCCBTT--TSCC-------------C--TTSCCSCSEEEECSGGGCBH----------HHHHHHHHTCCT
T ss_pred CHHHH-hccchhhhhh--HhhhccCCCchH--HHhc--cCCCCCCCEEEEechhhCCH----------HHHHHHHHhCCC
Confidence 11000 0000000000 022223343211 1111 11223789999999997741 122333344566
Q ss_pred CceEEEecc
Q 000114 1501 KIRIVALST 1509 (2158)
Q Consensus 1501 ~~riV~lSA 1509 (2158)
..|+|++.-
T Consensus 289 ~~~liLvGD 297 (608)
T 1w36_D 289 HARVIFLGD 297 (608)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEcc
Confidence 788888764
No 191
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.52 E-value=0.00019 Score=96.53 Aligned_cols=69 Identities=30% Similarity=0.371 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..||+-|.+|+..++..++-.||.||.|+|||.+..-.|.+.+.. +.+|++++||..-|.++.+++...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-----------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-----------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC-----------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 468999999999999877778999999999998876666665543 237999999999999999888653
No 192
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.41 E-value=0.00055 Score=88.09 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHhcC----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNT----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
|..+|+-|.+++..++.. +.+++|.||.|||||.+. ..++..+... ... ++++++||...+..+...
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-~~~--~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-GET--GIILAAPTHAAKKILSKL 93 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-TCC--CEEEEESSHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-CCc--eEEEecCcHHHHHHHHhh
Confidence 889999999999987543 448999999999999766 4555555552 222 689999999888766553
No 193
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.31 E-value=0.0033 Score=84.66 Aligned_cols=82 Identities=24% Similarity=0.269 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..||+-|.+++. ..+.+++|.||.|||||.+..--+.+.+..+.. ...+++++++|+..+.++.+++.+.
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~-------~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC-------SPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC-------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC-------ChhhEEEEeccHHHHHHHHHHHHHH
Confidence 478999999997 345679999999999999887777776654321 2347999999999999999999987
Q ss_pred ccc--CCcEEEEEe
Q 000114 574 LQM--YDVKVRELS 585 (2158)
Q Consensus 574 ~~~--~gi~v~~l~ 585 (2158)
++. .++.|..++
T Consensus 78 ~~~~~~~~~v~Tfh 91 (647)
T 3lfu_A 78 MGTSQGGMWVGTFH 91 (647)
T ss_dssp HCSCCTTCEEEEHH
T ss_pred hccccCCcEEEcHH
Confidence 643 345555543
No 194
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.31 E-value=0.00029 Score=94.71 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
..+|+-|.+|+..++..++-.||.||+|||||.+..-.|.+.+.+ +. ++++++||..-|+++.+++.
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~--~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GL--KVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TC--CEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CC--eEEEEcCchHHHHHHHHHHH
Confidence 479999999999998877778999999999998875555544443 34 89999999999999998886
No 195
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.24 E-value=0.0011 Score=85.25 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHcC----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
.|..||+-|.+++..++.. +.+++|.||.|+|||.+.. .++..+.... ...+++++||...+.++.
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~---------~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTG---------ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTT---------CCCEEEEESSHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcC---------CceEEEecCcHHHHHHHH
Confidence 5788999999999977543 4589999999999997663 4444444321 126999999999888776
Q ss_pred HHH
Q 000114 568 GNL 570 (2158)
Q Consensus 568 ~~~ 570 (2158)
...
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 654
No 196
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.14 E-value=0.00098 Score=89.02 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+..+|+.|.+|+..++. +..++|.||+|+|||.+..- ++..+.. ..+. ++++++||...+.++.+++.
T Consensus 178 ~~~ln~~Q~~av~~~l~-~~~~li~GppGTGKT~~~~~-~i~~l~~-~~~~--~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSAT-IVYHLAR-QGNG--PVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SCCCCHHHHHHHHHHHT-CSEEEEECCTTSCHHHHHHH-HHHHHHT-SSSC--CEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhc-CCCeEEECCCCCCHHHHHHH-HHHHHHH-cCCC--eEEEEeCcHHHHHHHHHHHH
Confidence 56799999999999886 45689999999999987643 3444443 1233 89999999999999988776
No 197
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.13 E-value=0.0011 Score=88.59 Aligned_cols=71 Identities=25% Similarity=0.372 Sum_probs=54.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
....+|+.|.+|+..++.+ ..++|.||+|+|||.+..-.+. .+... .+.++++++||...|.++.+.+.
T Consensus 177 ~~~~ln~~Q~~av~~~l~~-~~~li~GppGTGKT~~~~~~i~-~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 177 GLPDLNHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSATIVY-HLARQ---------GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp TSCCCCHHHHHHHHHHHTC-SEEEEECCTTSCHHHHHHHHHH-HHHTS---------SSCCEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcC-CCeEEECCCCCCHHHHHHHHHH-HHHHc---------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 3567999999999998864 5689999999999987654443 33321 13479999999999999998886
Q ss_pred hh
Q 000114 572 NR 573 (2158)
Q Consensus 572 ~~ 573 (2158)
+.
T Consensus 246 ~~ 247 (624)
T 2gk6_A 246 QT 247 (624)
T ss_dssp TT
T ss_pred hc
Confidence 53
No 198
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0012 Score=89.88 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=55.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
.+..||+.|.+|+..++.+ ..++|.||.|+|||.+..-.+.+.+... +.++++++||...|.++.+++.
T Consensus 357 ~~~~Ln~~Q~~Av~~~l~~-~~~lI~GppGTGKT~~i~~~i~~l~~~~----------~~~ILv~a~tn~A~d~l~~rL~ 425 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVLQR-PLSLIQGPPGTGKTVTSATIVYHLSKIH----------KDRILVCAPSNVAVDHLAAKLR 425 (802)
T ss_dssp TSCCCCHHHHHHHHHHTTC-SEEEEECSTTSSHHHHHHHHHHHHHHHH----------CCCEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhcC-CCEEEECCCCCCHHHHHHHHHHHHHhCC----------CCeEEEEcCcHHHHHHHHHHHH
Confidence 4568999999999998764 5689999999999987655444433321 2379999999999999999887
Q ss_pred hh
Q 000114 572 NR 573 (2158)
Q Consensus 572 ~~ 573 (2158)
+.
T Consensus 426 ~~ 427 (802)
T 2xzl_A 426 DL 427 (802)
T ss_dssp HT
T ss_pred hh
Confidence 64
No 199
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.0016 Score=88.93 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
+..+|+.|.+|+..++. +..++|.||+|||||.+..-.+ ..+... .+. ++++++||...++++.+++.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~~i~~~i-~~l~~~-~~~--~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQ-RPLSLIQGPPGTGKTVTSATIV-YHLSKI-HKD--RILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp SCCCCHHHHHHHHHHTT-CSEEEEECSTTSSHHHHHHHHH-HHHHHH-HCC--CEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHH-HHHHhC-CCC--eEEEEcCcHHHHHHHHHHHHh
Confidence 56899999999999886 4568999999999998764433 333321 234 899999999999999998873
No 200
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.88 E-value=0.0019 Score=88.03 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=53.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
...+|+.|.+|+..++. +..++|.||+|+|||.+.. .++..+.. ..+. ++++++||...+.++.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~ti~-~~i~~l~~-~~~~--~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSA-TIVYHLAR-QGNG--PVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp SCCCCHHHHHHHHHHHT-SSEEEEECCTTSCHHHHHH-HHHHHHHT-TCSS--CEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhcc-CCeEEEEcCCCCCHHHHHH-HHHHHHHH-cCCC--cEEEEcCcHHHHHHHHHHHH
Confidence 56799999999999886 4568999999999998763 44444443 1233 89999999999999888776
No 201
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.86 E-value=0.0025 Score=86.82 Aligned_cols=71 Identities=25% Similarity=0.358 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
....||+.|.+|+..++.+ ...+|.||.|+|||.+..-. +..+... .+.++++++||...|.++.+.+.
T Consensus 353 ~~~~Ln~~Q~~Av~~~l~~-~~~lI~GppGTGKT~ti~~~-i~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 353 GLPDLNHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSATI-VYHLARQ---------GNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp TSCCCCHHHHHHHHHHHTS-SEEEEECCTTSCHHHHHHHH-HHHHHTT---------CSSCEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHhccC-CeEEEEcCCCCCHHHHHHHH-HHHHHHc---------CCCcEEEEcCcHHHHHHHHHHHH
Confidence 3457999999999998864 56899999999999876443 3343321 12379999999999999988876
Q ss_pred hh
Q 000114 572 NR 573 (2158)
Q Consensus 572 ~~ 573 (2158)
..
T Consensus 422 ~~ 423 (800)
T 2wjy_A 422 QT 423 (800)
T ss_dssp TT
T ss_pred Hh
Confidence 53
No 202
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.86 E-value=0.0029 Score=83.21 Aligned_cols=62 Identities=18% Similarity=0.131 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
.+++.|.+++..++. +..++|.||.|+|||.+. ..++..+.. .+. ++++++||...+....+
T Consensus 189 ~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i-~~l~~~l~~--~g~--~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTT-KAVADLAES--LGL--EVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHH-HHHHHHHHH--TTC--CEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHH-HHHHHHHHh--cCC--eEEEecCcHHHHHHhHh
Confidence 689999999999876 567999999999999765 445555554 233 78999999998876654
No 203
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.70 E-value=0.0055 Score=80.49 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.+++.|.+++..++. +..+++.||.|+|||.+.. .++..+... +.++++++||...+..+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i~-~l~~~l~~~----------g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTTK-AVADLAESL----------GLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHHH-HHHHHHHHT----------TCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHHH-HHHHHHHhc----------CCeEEEecCcHHHHHHhHhhh
Confidence 689999999998875 4679999999999997643 344444332 347999999999888776543
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.71 E-value=0.046 Score=60.38 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=29.6
Q ss_pred cCCCCCCCHHHHHHHHHHH--------cCCCcEEEEccCCCchHHHHHH
Q 000114 490 FKGMTQLNRVQSRVYKSAL--------SSADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 490 f~g~~~l~~iQ~~~i~~~l--------~~~~nvlv~APTGsGKT~~a~l 530 (2158)
|.+|..-++-|.+++..+. ..+.+++++||+|+|||..+..
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH
Confidence 3445444678888887664 2356799999999999977643
No 205
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.35 E-value=0.095 Score=57.79 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHh--------cCCCcEEEEccCCchhHHHHHHHHHHHHH
Q 000114 1343 NPIQTQVFTVLY--------NTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2158)
Q Consensus 1343 ~~iQ~q~~~~l~--------~~~~nvli~ApTGSGKTl~a~l~il~~l~ 1383 (2158)
++.|.+++..+. ..+.++++.||+|+|||..+. ++...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~-~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV-ATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH-HHHHHHH
Confidence 557887777653 245789999999999998773 3444443
No 206
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.23 E-value=0.078 Score=70.22 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+|+|...+..+ .+...+++.+|-|+|||.+....++..+... .+..+++++|++..|.++...++..+
T Consensus 163 ~l~p~Q~~i~~~l-~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---------~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIM-SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHH-HHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhh-ccccEEEEEEcCccChHHHHHHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 5899999999876 3345589999999999988765555554432 23479999999999999998888776
Q ss_pred ccC
Q 000114 575 QMY 577 (2158)
Q Consensus 575 ~~~ 577 (2158)
...
T Consensus 233 ~~~ 235 (592)
T 3cpe_A 233 ELL 235 (592)
T ss_dssp TTS
T ss_pred HhC
Confidence 543
No 207
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.12 E-value=0.098 Score=64.75 Aligned_cols=70 Identities=9% Similarity=0.050 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f 1414 (2158)
.++|+|...+..+.. .+-+++..+-+.|||.++...++..+.. .++. .+++++|++..|..+++.++..+
T Consensus 163 ~L~p~Qk~il~~l~~-~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~--~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDK--AVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHH-SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSC--EEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc-CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCC--eEEEEeCCHHHHHHHHHHHHHHH
Confidence 689999999988753 3458999999999998876655544333 2333 89999999999998887777544
No 208
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.99 E-value=0.036 Score=74.56 Aligned_cols=93 Identities=20% Similarity=0.167 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
+..+|+-|.+++. ..+.+++|.|+.|||||.+..--+...+.... ...-+++++++|+..+.++.+++.+.++..
T Consensus 7 ~~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~~~~- 81 (647)
T 3lfu_A 7 LDSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLMGTS- 81 (647)
T ss_dssp HTTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHHCSC-
T ss_pred hhcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHhccc-
Confidence 3579999999997 34667999999999999887666665555421 111279999999999999999998655421
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHH-HHhh
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDA-LSRR 1455 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~-l~r~ 1455 (2158)
...+-|+|...|.. +++.
T Consensus 82 -------------------~~~~~v~Tfhs~~~~il~~ 100 (647)
T 3lfu_A 82 -------------------QGGMWVGTFHGLAHRLLRA 100 (647)
T ss_dssp -------------------CTTCEEEEHHHHHHHHHHH
T ss_pred -------------------cCCcEEEcHHHHHHHHHHH
Confidence 13578889887743 4443
No 209
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.79 E-value=0.26 Score=61.04 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+|+|...+..+. ....+++..|-+.|||.++...++..+... .+..+++++|++.-|.++.+.+...+
T Consensus 163 ~L~p~Qk~il~~l~-~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~---------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHH-HSSEEEEEECSSSCHHHHHHHHHHHHHHSS---------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc-cCcEEEEEEcCcCChhHHHHHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 78999999998654 334589999999999988766665544332 23479999999999998888777665
Q ss_pred c
Q 000114 575 Q 575 (2158)
Q Consensus 575 ~ 575 (2158)
.
T Consensus 233 ~ 233 (385)
T 2o0j_A 233 E 233 (385)
T ss_dssp H
T ss_pred H
Confidence 4
No 210
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=94.63 E-value=0.041 Score=50.39 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=52.0
Q ss_pred CccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHcc
Q 000114 1977 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 2035 (2158)
Q Consensus 1977 s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~ 2035 (2158)
.+|.+|||++...+.+|.++| |.|+.+|..++.++...+.++++....++...++.
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e~G---i~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAARG---VCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHTTT---CCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHHcC---CCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 458899999999999999999 99999999999999999999999999999888775
No 211
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.27 Score=59.30 Aligned_cols=130 Identities=13% Similarity=0.145 Sum_probs=64.9
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCC---ceEEEEEcccH-HHHHHHHHHHHHHhcCCCCcEEEEEcCCcch
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETG---VMRAVYIAPLE-ALAKERYRDWEIKFGQGLGMRVVELTGETAM 1431 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~---~~~~v~IaP~r-aLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~ 1431 (2158)
...+++|.||+|+|||.++- .+++.+......+ .+..++|--.. .--.+.+..+.+.+. |.++ +++.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~-~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~---g~~~---~~~~-- 114 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN-DVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS---KENL---CGDI-- 114 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH-HHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS---CCC-----CCC--
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc---CCCC---CchH--
Confidence 45689999999999998874 4455554322111 24566664211 111233333333442 2111 1100
Q ss_pred hhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCC
Q 000114 1432 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2158)
Q Consensus 1432 ~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl 1511 (2158)
+-+.+..++.... ..-...-++++||+|.+.+. + ++-.+..+...-..+.-+|+.++|+
T Consensus 115 -------------~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~~q-----~-~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 115 -------------SLEALNFYITNVP--KAKKRKTLILIQNPENLLSE-----K-ILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp -------------CHHHHHHHHHHSC--GGGSCEEEEEEECCSSSCCT-----H-HHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred -------------HHHHHHHHHHHhh--hccCCceEEEEecHHHhhcc-----h-HHHHHHhcccccCCcEEEEEEecCc
Confidence 1223333333210 11245678999999998721 1 2222222322223467788889998
Q ss_pred CChH
Q 000114 1512 ANAK 1515 (2158)
Q Consensus 1512 ~n~~ 1515 (2158)
.+..
T Consensus 174 d~~~ 177 (318)
T 3te6_A 174 VTIR 177 (318)
T ss_dssp CCCH
T ss_pred ccch
Confidence 6643
No 212
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.45 E-value=0.035 Score=75.00 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.||+-|.+++.. .+.+++|.|+.|||||.+..--+.+.+..... ...++++|+.|+..+.++.+++.+.+
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-------~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-------CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 589999999874 35679999999999999887777777665321 23479999999999999999998875
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl 608 (2158)
+..+ ...+-|+|-..|
T Consensus 72 ~~~~------------------~~~~~v~Tfhs~ 87 (673)
T 1uaa_A 72 GRKE------------------ARGLMISTFHTL 87 (673)
T ss_dssp CTTT------------------TTTSEEEEHHHH
T ss_pred Cccc------------------ccCCEEEeHHHH
Confidence 4311 124678888876
No 213
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.30 E-value=0.19 Score=66.40 Aligned_cols=72 Identities=8% Similarity=0.038 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
.++|+|...+..+.. ...+++.+|-|+|||.+....++..+.. .++. ++++++|++..+.+.+..++..+..
T Consensus 163 ~l~p~Q~~i~~~l~~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-~~~~--~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDK--AVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHH-CSEEEEEECSSSCHHHHHHHHHHHHHHT-SSSC--EEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhcc-ccEEEEEEcCccChHHHHHHHHHHHHHh-CCCC--eEEEEECCHHHHHHHHHHHHHHHHh
Confidence 589999999988743 4558999999999998876554444443 2333 8999999999999999888755543
No 214
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.26 E-value=0.051 Score=73.79 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=75.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..||+-|.+++.. .+.+++|.|+.|||||.+..--+.+.+..... ...++++|+.|+..|.++.+++.+.
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~-------~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-------APWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4789999999874 35679999999999999887777777664211 2347999999999999999999886
Q ss_pred cccCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
++.. ...+-|+|-..| ..+.|......-+ .-..-|+|+.+
T Consensus 80 l~~~-------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~-~~~f~i~d~~d 120 (724)
T 1pjr_A 80 LGGA-------------------AEDVWISTFHSMCVRILRRDIDRIGI-NRNFSILDPTD 120 (724)
T ss_dssp HGGG-------------------GTTSEEEEHHHHHHHHHHHHGGGGTC-CTTCEECCHHH
T ss_pred hccc-------------------ccCcEEeeHHHHHHHHHHHHHHHhCC-CCCCEECCHHH
Confidence 5421 124678888876 3333332111100 12356777654
No 215
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.62 E-value=0.37 Score=58.08 Aligned_cols=127 Identities=9% Similarity=0.123 Sum_probs=62.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH-----HHHHHHHHHHHhhcccCCcEEEEEe
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK-----ALVAEVVGNLSNRLQMYDVKVRELS 585 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~k-----aLa~q~~~~~~~~~~~~gi~v~~l~ 585 (2158)
..+++++||+|+|||.++-.. ++.+...... .....+..++|--+. ....++++.+ . |.++ +
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v-~~~L~~~~~~---~~~~~~~~v~INc~~~~t~~~~~~~I~~~L----~--g~~~---~ 111 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDV-MDELITSSAR---KELPIFDYIHIDALELAGMDALYEKIWFAI----S--KENL---C 111 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHH-HHHHHHTTTT---TSSCCEEEEEEETTCCC--HHHHHHHHHHH----S--CCC-----
T ss_pred CCeEEEECCCCCCHHHHHHHH-HHHHHHHhhh---ccCCceEEEEEeccccCCHHHHHHHHHHHh----c--CCCC---C
Confidence 457999999999999877544 4555432111 011246777775332 2223333332 1 1111 0
Q ss_pred CCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEE
Q 000114 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG 665 (2158)
Q Consensus 586 Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~ 665 (2158)
++. +-+.+..+..... ..-...-+|++||+|.+. . ... +-.+.++......++-+|+
T Consensus 112 ~~~---------------~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~-~-q~~----L~~l~~~~~~~~s~~~vI~ 168 (318)
T 3te6_A 112 GDI---------------SLEALNFYITNVP--KAKKRKTLILIQNPENLL-S-EKI----LQYFEKWISSKNSKLSIIC 168 (318)
T ss_dssp CCC---------------CHHHHHHHHHHSC--GGGSCEEEEEEECCSSSC-C-THH----HHHHHHHHHCSSCCEEEEE
T ss_pred chH---------------HHHHHHHHHHHhh--hccCCceEEEEecHHHhh-c-chH----HHHHHhcccccCCcEEEEE
Confidence 100 1122322222110 011234689999999987 2 222 2233333333344677888
Q ss_pred EccccCCh
Q 000114 666 LSATLPNY 673 (2158)
Q Consensus 666 lSATlpn~ 673 (2158)
.++|+.+.
T Consensus 169 i~n~~d~~ 176 (318)
T 3te6_A 169 VGGHNVTI 176 (318)
T ss_dssp ECCSSCCC
T ss_pred EecCcccc
Confidence 99997654
No 216
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.43 E-value=0.084 Score=71.23 Aligned_cols=91 Identities=23% Similarity=0.221 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
.+||-|.+++.. .+.+++|.|+.|||||.+..--+.+.+.... +.. ++++|+.|+..+.++.+++.+.++..
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~--~IL~lTfT~~Aa~em~~Rl~~~l~~~-- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVGQTLGRK-- 74 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG--GEEEEESSHHHHHHHHHHHHHHSCTT--
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHH--HeEEEeccHHHHHHHHHHHHHHcCcc--
Confidence 589999999874 3677999999999999887666665555421 223 79999999999999999888655421
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHH-HHHhh
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRR 1455 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~-~l~r~ 1455 (2158)
....+-|+|...|. .+++.
T Consensus 75 -----------------~~~~~~v~Tfhs~~~~il~~ 94 (673)
T 1uaa_A 75 -----------------EARGLMISTFHTLGLDIIKR 94 (673)
T ss_dssp -----------------TTTTSEEEEHHHHHHHHHHH
T ss_pred -----------------cccCCEEEeHHHHHHHHHHH
Confidence 01257788887774 34443
No 217
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=92.91 E-value=0.14 Score=69.45 Aligned_cols=110 Identities=22% Similarity=0.182 Sum_probs=73.2
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
..+||-|.+++.. .+.+++|.|+.|||||.+..--+...+.... -..-++++|+.|+..|.++.+++.+.++..
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~-- 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSLLGGA-- 83 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHHHGGG--
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhccc--
Confidence 5799999999864 3567999999999999887666665555321 111279999999999999999888655421
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHH-HHHhhhhccccccceeEEEecccc
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
...+-|+|-..|. .+++.......+ .-++-|+|+.+
T Consensus 84 ------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~-~~~f~i~d~~d 120 (724)
T 1pjr_A 84 ------------------AEDVWISTFHSMCVRILRRDIDRIGI-NRNFSILDPTD 120 (724)
T ss_dssp ------------------GTTSEEEEHHHHHHHHHHHHGGGGTC-CTTCEECCHHH
T ss_pred ------------------ccCcEEeeHHHHHHHHHHHHHHHhCC-CCCCEECCHHH
Confidence 1246788877764 344442221111 11245677655
No 218
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.61 E-value=0.35 Score=58.75 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=78.8
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE-EEcCCcchh-
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV-ELTGETAMD- 1432 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~-~ltG~~~~~- 1432 (2158)
..++-++|+|++|+|||..++-.+...... +. +++|++.- .-..|+..++....... ... ...|..+..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~--~Vl~fSlE-ms~~ql~~Rlls~~~~v---~~~~l~~g~Ls~~e 114 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALND---DR--GVAVFSLE-MSAEQLALRALSDLTSI---NMHDLESGRLDDDQ 114 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC--EEEEEESS-SCHHHHHHHHHHHHHCC---CHHHHHHTCCCHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCC-CCHHHHHHHHHHHhhCC---CHHHHhcCCCCHHH
Confidence 456779999999999998775544443332 33 67777542 22334444433222211 100 011222111
Q ss_pred -------hhcccCCcEEE-e----CHHHHHHHHhhhhccccccceeEEEecccccccCC-----CCChHHHHHHHHHHHH
Q 000114 1433 -------LKLLEKGQIII-S----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-----GGPVLEVIVSRMRYIA 1495 (2158)
Q Consensus 1433 -------~~~l~~~~IIV-~----TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-----~g~~~e~~isrl~~i~ 1495 (2158)
...+...++.| - |+..+....+++... ...+++||||-++.+... +...+..+...++.++
T Consensus 115 ~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~--~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lA 192 (338)
T 4a1f_A 115 WENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQ--HKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLA 192 (338)
T ss_dssp HHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHH--CTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHh--cCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 11223345555 2 345555555554322 116999999999988542 2344666777788777
Q ss_pred hhcCCCceEEEeccC
Q 000114 1496 SQVENKIRIVALSTS 1510 (2158)
Q Consensus 1496 ~~~~~~~riV~lSAT 1510 (2158)
+.+ ++.+|++|-.
T Consensus 193 kel--~vpVi~lsQl 205 (338)
T 4a1f_A 193 REL--EIPIIALVQL 205 (338)
T ss_dssp HHH--TSCEEEEEEC
T ss_pred HHc--CCeEEEEEec
Confidence 654 6788888764
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.51 E-value=0.14 Score=54.72 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2158)
..+.+++++|+|+|||..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999997653
No 220
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.29 E-value=0.34 Score=53.71 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=26.6
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccH
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~r 1400 (2158)
.-.++.||.|+|||..++-.+.+.... +. +++++.|..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~--~v~~~~~~~ 41 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG---KK--KVAVFKPKI 41 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT---TC--EEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC---CC--eEEEEeecc
Confidence 347899999999998875444444332 33 788998884
No 221
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.23 E-value=0.34 Score=60.19 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=19.0
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNH 1382 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l 1382 (2158)
..++++.||+|+|||.++ ..+.+.+
T Consensus 45 ~~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 457999999999999887 3444444
No 222
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.22 E-value=0.37 Score=55.30 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=21.7
Q ss_pred HHHHHHHHHHc--CCCcEEEEccCCCchHHHHHH
Q 000114 499 VQSRVYKSALS--SADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 499 iQ~~~i~~~l~--~~~nvlv~APTGsGKT~~a~l 530 (2158)
...+.+..+.. ...+++++||+|+|||..+..
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHH
Confidence 33334444443 356899999999999987643
No 223
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.96 E-value=0.6 Score=57.83 Aligned_cols=20 Identities=55% Similarity=0.650 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2158)
..+++++||+|+|||..+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 45799999999999987643
No 224
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.91 E-value=0.38 Score=55.58 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=26.7
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
..+..++|.||+|+|||..+...+...... ++ +++|+.-
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~--~v~~~~~ 59 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GE--PGIYVAL 59 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TC--CEEEEES
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CC--eEEEEEc
Confidence 346779999999999998875444443332 34 6777754
No 225
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=91.76 E-value=0.14 Score=73.58 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
.++|+-|.+++.. .+.+++|.|+-|||||.+..--+++.+..+.. ..+.-+++++++|++.|.++.+++...
T Consensus 9 ~~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-----~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEEN-----PIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-----CCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-----CCCccceEEEeccHHHHHHHHHHHHHH
Confidence 3689999999874 35689999999999999988777777765321 112347999999999999999999886
Q ss_pred cc
Q 000114 574 LQ 575 (2158)
Q Consensus 574 ~~ 575 (2158)
+.
T Consensus 81 l~ 82 (1232)
T 3u4q_A 81 LE 82 (1232)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 226
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.58 E-value=0.55 Score=52.86 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.6
Q ss_pred CcEEEEccCCchhHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~ 1375 (2158)
.++++.||+|+|||..+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 369999999999998763
No 227
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.55 E-value=0.45 Score=57.22 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.5
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++.
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4479999999999998884
No 228
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.37 E-value=0.22 Score=56.81 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=28.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
.-++++||+|+|||..++-.+.+....+ .+++++.|.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g-----------~kVli~~~~~d 51 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYAD-----------VKYLVFKPKID 51 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTT-----------CCEEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcC-----------CEEEEEEeccC
Confidence 3478899999999988776666654432 37899988763
No 229
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.22 E-value=0.48 Score=57.32 Aligned_cols=142 Identities=17% Similarity=0.162 Sum_probs=74.5
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE-------EcC
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE-------LTG 1427 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~-------ltG 1427 (2158)
..++-++|+|++|+|||..+.-.+.....+ +. +++|++-- .-..|+..++..... ++.... +++
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~--~vl~~slE-~s~~~l~~R~~~~~~---~i~~~~l~~~~~~l~~ 136 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD--VVNLHSLE-MGKKENIKRLIVTAG---SINAQKIKAARRDFAS 136 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TC--EEEEEESS-SCHHHHHHHHHHHHT---TCCHHHHHSCHHHHCS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC--eEEEEECC-CCHHHHHHHHHHHHc---CCCHHHHhcCCCCCCH
Confidence 346779999999999998775555444333 23 78887633 223333344332221 111100 111
Q ss_pred Ccchh----hhcccCCcEEEe-----CHHHHHHHHhhhhcccccccee--EEEecccccccCCC--C---ChHHHHHHHH
Q 000114 1428 ETAMD----LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVS--LFIIDELHLIGGQG--G---PVLEVIVSRM 1491 (2158)
Q Consensus 1428 ~~~~~----~~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~--llIiDEaH~l~~~~--g---~~~e~~isrl 1491 (2158)
+.... ...+....|.+. |++.+...++++... ..++ +||||-++.+.... . ..+..+...+
T Consensus 137 ~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~---~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~L 213 (315)
T 3bh0_A 137 EDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL 213 (315)
T ss_dssp SCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHT---SSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHH
Confidence 11000 112223455553 455555555554322 3578 99999999886421 1 2234456666
Q ss_pred HHHHhhcCCCceEEEeccC
Q 000114 1492 RYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1492 ~~i~~~~~~~~riV~lSAT 1510 (2158)
+.+++.+ ++.++++|-.
T Consensus 214 k~lAk~~--~i~vi~lsql 230 (315)
T 3bh0_A 214 KKMAREL--DVVVIALSQL 230 (315)
T ss_dssp HHHHHHH--TCEEEEEECC
T ss_pred HHHHHHh--CCeEEEEeec
Confidence 6665543 5677777653
No 230
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.19 E-value=0.16 Score=63.47 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=52.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2158)
-.++.|+.|||||.... +.+.. .+.++++||++++.++.+.+.+. |. .
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~~------------~~~lVlTpT~~aa~~l~~kl~~~----~~--------~---- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVNF------------EEDLILVPGRQAAEMIRRRANAS----GI--------I---- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCCT------------TTCEEEESCHHHHHHHHHHHTTT----SC--------C----
T ss_pred EEEEEcCCCCCHHHHHH----HHhcc------------CCeEEEeCCHHHHHHHHHHhhhc----Cc--------c----
Confidence 35899999999997542 22211 14699999999999888777432 11 0
Q ss_pred hhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 593 ~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
.....-|.|-+++ +.+... ...-..++|||||+-+++
T Consensus 211 ---~~~~~~V~T~dsf--L~~~~~--~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 211 ---VATKDNVRTVDSF--LMNYGK--GARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp ---CCCTTTEEEHHHH--HHTTTS--SCCCCCSEEEEETGGGSC
T ss_pred ---ccccceEEEeHHh--hcCCCC--CCCCcCCEEEEeCcccCC
Confidence 1122346777763 222211 111237899999999774
No 231
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=91.16 E-value=0.18 Score=72.41 Aligned_cols=74 Identities=23% Similarity=0.204 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
..+|+-|.+++.. .+.|++|.|..|||||.+..--+++.+.... +-..-+++++++|++.+.++.+++.+.++.
T Consensus 9 ~~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~ 83 (1232)
T 3u4q_A 9 STWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEK 83 (1232)
T ss_dssp -CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHH
Confidence 3689999999875 3668999999999999988777777766532 011127999999999999999999876653
No 232
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.08 E-value=0.5 Score=53.94 Aligned_cols=40 Identities=15% Similarity=0.009 Sum_probs=28.1
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~r 1400 (2158)
.+.-+++.||+|+|||..++-.+.+.... +. +++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~--kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA---DV--KYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TC--CEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc---CC--EEEEEEecc
Confidence 34457889999999998885555544433 33 788887764
No 233
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.07 E-value=0.56 Score=54.13 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=32.4
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
..++.++++||+|+|||..++..+......+ .+++|+.-... ..++.+++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~-----------~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMG-----------EPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSSC-HHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-----------CeEEEEEccCC-HHHHHHHHH
Confidence 4456789999999999988765555544321 25777764332 345544444
No 234
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.00 E-value=0.32 Score=54.17 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=27.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~k 560 (2158)
-.++++|.|||||..++-.+.+.... +.+++++.|.+
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~-----------g~kV~v~k~~~ 46 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIA-----------KQKIQVFKPEI 46 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-----------TCCEEEEEEC-
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-----------CCEEEEEEecc
Confidence 36889999999998876665555433 34799999984
No 235
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.99 E-value=0.62 Score=55.22 Aligned_cols=20 Identities=45% Similarity=0.672 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2158)
...+++++||+|+|||..+-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 45679999999999997763
No 236
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.97 E-value=0.48 Score=58.84 Aligned_cols=20 Identities=35% Similarity=0.295 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2158)
..+++++||+|+|||..+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 34699999999999987643
No 237
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.97 E-value=1.3 Score=53.74 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.1
Q ss_pred CcEEEEccCCCchHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l 530 (2158)
.+++++||+|+|||..+-.
T Consensus 38 ~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp SSEEEECSSSSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 4799999999999987643
No 238
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.79 E-value=0.16 Score=56.31 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=26.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~k 560 (2158)
-.+++||.|+|||..++-.+.+.... +.+++++.|..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~-----------g~~v~~~~~~~ 41 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLG-----------KKKVAVFKPKI 41 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-----------TCEEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-----------CCeEEEEeecc
Confidence 46899999999998876555554432 23789998884
No 239
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.69 E-value=1.7 Score=52.49 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=24.4
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
.++++.||+|+|||.++. ++...+... +. .++|+..
T Consensus 38 ~~lll~G~~GtGKT~la~-~i~~~~~~~--~~--~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ-AAGNEAKKR--GY--RVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHH-HHHHHHHHT--TC--CEEEEEH
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHC--CC--EEEEEEH
Confidence 579999999999998873 444444431 22 5666653
No 240
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.67 E-value=0.51 Score=56.74 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=16.2
Q ss_pred CcEEEEccCCCchHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l 530 (2158)
.+++++||+|+|||.++..
T Consensus 68 ~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999987743
No 241
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.55 E-value=0.51 Score=60.06 Aligned_cols=143 Identities=24% Similarity=0.171 Sum_probs=73.9
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh---
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--- 1432 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--- 1432 (2158)
.++-++|+|++|+|||..++-.+...... .+. +++|+..-- -..|+..++..........++ ..|..+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~--~vl~~slE~-~~~~l~~R~~~~~~~i~~~~l--~~g~l~~~~~~ 271 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--EGV--GVGIYSLEM-PAAQLTLRMMCSEARIDMNRV--RLGQLTDRDFS 271 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCC--CEEEEESSS-CHHHHHHHHHHHHTTCCTTTC--CGGGCCHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCC--eEEEEECCC-CHHHHHHHHHHHHcCCCHHHH--hCCCCCHHHHH
Confidence 46679999999999998775544444332 122 577765421 122334433222221100000 12322211
Q ss_pred -----hhcccCCcEEEe-----CHHHHHHHHhhhhccccccceeEEEecccccccCC--C---CC---hHHHHHHHHHHH
Q 000114 1433 -----LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--G---GP---VLEVIVSRMRYI 1494 (2158)
Q Consensus 1433 -----~~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~--~---g~---~~e~~isrl~~i 1494 (2158)
...+...++.+- |++.+....+++... ..+++||||.++.+... . .. .+..+...++.+
T Consensus 272 ~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~---~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~l 348 (444)
T 2q6t_A 272 RLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQ---NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKAL 348 (444)
T ss_dssp HHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHH---SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 111233456553 455555555554322 36899999999988643 1 11 233455566666
Q ss_pred HhhcCCCceEEEeccC
Q 000114 1495 ASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2158)
+..+ ++.+|++|-.
T Consensus 349 Ake~--~v~vi~lsql 362 (444)
T 2q6t_A 349 AREL--GIPIIALSQL 362 (444)
T ss_dssp HHHH--TSCEEEEEEC
T ss_pred HHHh--CCeEEEEecC
Confidence 5543 5777887743
No 242
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.50 E-value=1.2 Score=56.43 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=25.9
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEccc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ 1399 (2158)
.++++.||+|+|||..+. ++...+....++. +++|+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~-aia~~l~~~~~~~--~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDL--RVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHHHH-HHHHHHHHHCCSS--CEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCC--eEEEeeHH
Confidence 579999999999998873 4444444422233 56666543
No 243
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.27 E-value=2 Score=48.17 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=20.0
Q ss_pred HHHHHHHHcCC--CcEEEEccCCCchHHHHH
Q 000114 501 SRVYKSALSSA--DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 501 ~~~i~~~l~~~--~nvlv~APTGsGKT~~a~ 529 (2158)
.+.+...+... .+++++||+|+|||..+.
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 33444444433 369999999999997664
No 244
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.27 E-value=0.47 Score=60.55 Aligned_cols=140 Identities=23% Similarity=0.260 Sum_probs=71.5
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH-HhcCCCCcEEEE-EcCCcch-h
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI-KFGQGLGMRVVE-LTGETAM-D 1432 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~-~f~~~~g~~v~~-ltG~~~~-~ 1432 (2158)
.++-++|.|++|+|||..+...+...... .+. +++|+..--. ..|+..++.. .++ +.... ..|.... +
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~--~Vl~~s~E~s-~~~l~~r~~~~~~~----~~~~~l~~g~l~~~~ 272 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--TNE--NVAIFSLEMS-AQQLVMRMLCAEGN----INAQNLRTGKLTPED 272 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSC--CEEEEESSSC-HHHHHHHHHHHHHT----CCHHHHHTSCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCC--cEEEEECCCC-HHHHHHHHHHHHcC----CCHHHHhcCCCCHHH
Confidence 46779999999999998775544444332 122 5777653211 1333333321 111 11000 1122211 1
Q ss_pred h-------hcccCCcEEEe-----CHHHHHHHHhhhhccccccceeEEEecccccccCCC----C--ChHHHHHHHHHHH
Q 000114 1433 L-------KLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG----G--PVLEVIVSRMRYI 1494 (2158)
Q Consensus 1433 ~-------~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~----g--~~~e~~isrl~~i 1494 (2158)
. ..+...++.+. |++.+....++.... ..+++||||+++.+.... + ..+..+...++.+
T Consensus 273 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~---~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~l 349 (454)
T 2r6a_A 273 WGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQE---SGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKAL 349 (454)
T ss_dssp HHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTT---TCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 1 11223455553 445555444443322 368999999999886421 1 1234455556666
Q ss_pred HhhcCCCceEEEecc
Q 000114 1495 ASQVENKIRIVALST 1509 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSA 1509 (2158)
...+ ++.+|++|-
T Consensus 350 Ake~--~i~vi~~sq 362 (454)
T 2r6a_A 350 AREL--EVPVIALSQ 362 (454)
T ss_dssp HHHH--TCCEEEEEC
T ss_pred HHHh--CCeEEEEec
Confidence 5433 567777764
No 245
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.23 E-value=0.91 Score=58.90 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=25.3
Q ss_pred ccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 623 ~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
.-.+|||||+|.+.......+..+.. .++ ....++|+.+++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~----~l~--~~~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQ----FCR--KTSTPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHH----HHH--HCSSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHH----HHH--hcCCCEEEEEcCC
Confidence 34699999999987633222333322 222 2456788888774
No 246
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.19 E-value=0.61 Score=54.47 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2158)
...+++++||+|+|||..+-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34579999999999998764
No 247
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.03 E-value=0.8 Score=50.95 Aligned_cols=38 Identities=18% Similarity=0.038 Sum_probs=26.8
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccH
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~r 1400 (2158)
.-.++.+|.|||||..++-.+.+.... +. +++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~--kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIA---KQ--KIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT---TC--CEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC---CC--EEEEEEecc
Confidence 347789999999998876555544333 33 788898884
No 248
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.96 E-value=2.9 Score=47.36 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCC---cEEEEccCCCchHHHHH
Q 000114 500 QSRVYKSALSSAD---NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 500 Q~~~i~~~l~~~~---nvlv~APTGsGKT~~a~ 529 (2158)
..+.+..++..+. .++++||+|+|||..+.
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 3334444444333 68999999999997764
No 249
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.94 E-value=1.3 Score=54.88 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=19.4
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNH 1382 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l 1382 (2158)
...++++.||+|+|||.++. .+.+.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~-~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR-LVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH-HHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH-HHHHHH
Confidence 45689999999999998874 333433
No 250
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.87 E-value=0.18 Score=53.88 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCchhHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a 1374 (2158)
.+..+++.+|+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999776
No 251
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.85 E-value=1.9 Score=54.60 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=18.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQL 536 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l 536 (2158)
.+++++||+|+|||..+. ++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~-aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ-SIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 479999999999998764 333444
No 252
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.70 E-value=0.39 Score=60.15 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=51.5
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhccc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~ 1437 (2158)
.-.+|.|+.|||||.... +.+. .. +.++++||++++.++.+++. .. |. ..
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~~----~~--~~lVlTpT~~aa~~l~~kl~----~~-~~---------------~~ 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRVN----FE--EDLILVPGRQAAEMIRRRAN----AS-GI---------------IV 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHCC----TT--TCEEEESCHHHHHHHHHHHT----TT-SC---------------CC
T ss_pred cEEEEEcCCCCCHHHHHH----HHhc----cC--CeEEEeCCHHHHHHHHHHhh----hc-Cc---------------cc
Confidence 346789999999997652 2121 12 56999999999977665543 11 11 01
Q ss_pred CCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
..+.-|.|-+++. .+. .....-..+++||||+-++.
T Consensus 212 ~~~~~V~T~dsfL---~~~-~~~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 212 ATKDNVRTVDSFL---MNY-GKGARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp CCTTTEEEHHHHH---HTT-TSSCCCCCSEEEEETGGGSC
T ss_pred cccceEEEeHHhh---cCC-CCCCCCcCCEEEEeCcccCC
Confidence 1233467766543 221 11111247899999999773
No 253
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=89.59 E-value=0.66 Score=51.44 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=27.2
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
=.+++||.|||||.-.+-.+-+....+ .+++|+.|.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~-----------~kvl~~kp~ 57 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQ-----------YKCLVIKYA 57 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT-----------CCEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC-----------CeEEEEccc
Confidence 368899999999977766666555432 379999887
No 254
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.55 E-value=1.5 Score=49.88 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=27.2
Q ss_pred cee--EEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCC
Q 000114 1464 QVS--LFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2158)
Q Consensus 1464 ~v~--llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl 1511 (2158)
+.+ ++|+||...+..........++..++.+... .+..+|+.|-..
T Consensus 121 ~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~ 168 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNK--WNFTIYATSQYA 168 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHH--TTEEEEEEEC--
T ss_pred CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHh--CCCeEEEEeccC
Confidence 567 9999999977532222345566666665443 255666666554
No 255
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.47 E-value=0.81 Score=54.21 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=17.6
Q ss_pred cCCCcEEEEccCCchhHHHHH
Q 000114 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~ 1375 (2158)
....++++.||+|+|||.++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 345679999999999998773
No 256
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=89.40 E-value=0.21 Score=58.78 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhH
Q 000114 969 ADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE 1048 (2158)
Q Consensus 969 ~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e 1048 (2158)
.+.+..|+..|...|+|+.+ ..+|++|+.++.++++|...+++..+....+. .+++.|.|+-++ .++.+|+.+
T Consensus 17 ~~~l~~A~~~L~~LgAld~~-----g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~-~~~l~iaA~Ls~-~~~f~~p~~ 89 (270)
T 3i4u_A 17 METLITAMEQLYTLGALDDE-----GLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCS-EEMLTIVSMLSV-QNVFYRPKD 89 (270)
T ss_dssp HHHHHHHHHHHHHHTSBCTT-----SCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCH-HHHHHHHHHHTS-SCCBCCCGG
T ss_pred HHHHHHHHHHHHHcCCcCCC-----CCccHHHHHHHhCCCCHHHHHHHHHhhhcCCH-HHHHHHHHHHCC-CccccCCch
Confidence 35788999999999999633 37899999999999999999999887665554 566666554433 577788776
Q ss_pred HHHHH
Q 000114 1049 KMELA 1053 (2158)
Q Consensus 1049 ~~~l~ 1053 (2158)
+.+..
T Consensus 90 ~~~~a 94 (270)
T 3i4u_A 90 KQALA 94 (270)
T ss_dssp GHHHH
T ss_pred hHHHH
Confidence 65543
No 257
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.37 E-value=0.61 Score=53.42 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCchhHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~ 1375 (2158)
...++++.||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999998773
No 258
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.35 E-value=2.6 Score=45.71 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2158)
..+++++||+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 45799999999999987643
No 259
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.33 E-value=1.6 Score=54.36 Aligned_cols=19 Identities=47% Similarity=0.695 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
..++|++||+|+|||.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998764
No 260
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.97 E-value=1.2 Score=54.02 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=26.5
Q ss_pred cceEEeecccccccCCh----hhHHHHHHHHHHHHhhcc-ccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNRG----PVLESIVARTVRQIETTK-EHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~rg----~~le~iv~r~~~~~~~~~-~~~riv~lSAT 669 (2158)
..+|+|||+|.+...++ .....++..++..+.... ...+++.+.||
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~at 156 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 156 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEE
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEec
Confidence 46999999999854332 234445555555444332 23455666566
No 261
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.89 E-value=0.69 Score=57.71 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=17.2
Q ss_pred CCcEEEEccCCchhHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l 1376 (2158)
..++|+.||+|+|||.++..
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999988743
No 262
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.83 E-value=0.8 Score=55.52 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=16.5
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++.
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4579999999999998873
No 263
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.78 E-value=0.99 Score=55.01 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=24.4
Q ss_pred CHHHHHHHHHH---HcCCC---cEEEEccCCCchHHHHHHHH
Q 000114 497 NRVQSRVYKSA---LSSAD---NILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 497 ~~iQ~~~i~~~---l~~~~---nvlv~APTGsGKT~~a~l~i 532 (2158)
.|+|.+++..+ +.+++ .+|++||.|+|||.++...+
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 46676666543 33332 48999999999998775433
No 264
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.63 E-value=0.99 Score=54.65 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=18.8
Q ss_pred HHHHHHHhcCC---CcEEEEccCCchhHHHHH
Q 000114 1347 TQVFTVLYNTD---DNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1347 ~q~~~~l~~~~---~nvli~ApTGSGKTl~a~ 1375 (2158)
.+.+..++..+ ..+++++|+|+|||.++.
T Consensus 35 ~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 35 KETFKSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 34444444433 345778889999998873
No 265
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.60 E-value=0.89 Score=56.24 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=29.2
Q ss_pred ceEEeecccccccCC-------hhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 625 KLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 625 ~lIIiDEaH~l~d~r-------g~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
.+|.|||+|.+...| .......+..++..+......-.++.+-||
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEecc
Confidence 578899999886432 123455666666666655555666666677
No 266
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.51 E-value=1.6 Score=56.06 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.7
Q ss_pred cCCCcEEEEccCCchhHHHHH
Q 000114 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~ 1375 (2158)
....++++.||+|+|||+++-
T Consensus 236 ~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHH
Confidence 345689999999999998873
No 267
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.37 E-value=4.1 Score=44.08 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.6
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 5689999999999998774
No 268
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.37 E-value=0.88 Score=53.62 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2158)
.+++++||+|+|||.++.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 479999999999998764
No 269
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=87.96 E-value=0.34 Score=43.41 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=46.2
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchh-HHHHHHHHhc
Q 000114 1141 QTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM-GRTLHKFVHQ 1195 (2158)
Q Consensus 1141 ~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 1195 (2158)
.+.|..+||||+...++|-++==+++.+...+.+||.++++ ++. ++.|++++|.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig-~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC-chHHHHHHHHHHhc
Confidence 45688999999999999877544788999999999999988 566 9999999974
No 270
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.79 E-value=0.82 Score=52.00 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=28.9
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
-.+++||-|||||..++-.+.+.... +.+++++.|.+.
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~-----------g~kvli~kp~~D 58 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIA-----------QYKCLVIKYAKD 58 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTT-----------TCCEEEEEETTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-----------CCeEEEEeecCC
Confidence 35788999999998877776666543 347999999874
No 271
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.77 E-value=1.7 Score=54.60 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=67.9
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia--P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
..+++++|+|+|||..+.--+ ..+.. .++ +++++. +.+.-+.++...|.... |+.+.. ....
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~--~G~--kVllv~~D~~r~~a~eqL~~~~~~~----gv~~~~--~~~~----- 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK--RGY--KVGLVAADVYRPAAYDQLLQLGNQI----GVQVYG--EPNN----- 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH--TTC--CEEEEEECCSCHHHHHHHHHHHHTT----TCCEEC--CTTC-----
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH--cCC--eEEEEecCccchhHHHHHHHHHHhc----CCceee--cccc-----
Confidence 357888999999998763322 23333 234 555444 56665666666665432 333321 1111
Q ss_pred ccCCcEEEeCHHHHH-HHHhhhhccccccceeEEEeccccccc--CCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1436 LEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELHLIG--GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1436 l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~llIiDEaH~l~--~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
..|..+. ..+.. ...+..+++|||++-++. ... ..+..+..+.....+..-++.++|+..
T Consensus 162 --------~dp~~i~~~al~~----a~~~~~DvvIIDTaGr~~~~~d~-----~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 162 --------QNPIEIAKKGVDI----FVKNKMDIIIVDTAGRHGYGEET-----KLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp --------SCHHHHHHHHHHH----TTTTTCSEEEEEECCCSSSCCTT-----HHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred --------CCHHHHHHHHHHH----HHhcCCCEEEEECCCCccccCCH-----HHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 1133221 11111 112578999999997654 221 244445544444455666777787754
Q ss_pred C-hHHHHHHh
Q 000114 1513 N-AKDLGEWI 1521 (2158)
Q Consensus 1513 n-~~dl~~wl 1521 (2158)
. +..++..+
T Consensus 225 q~a~~~a~~f 234 (433)
T 3kl4_A 225 QKAYDLASRF 234 (433)
T ss_dssp GGGHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 2 33444433
No 272
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=87.59 E-value=1.2 Score=57.27 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=31.0
Q ss_pred ceEEeecccccccCC----hhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 625 KLLIIDEIHLLHDNR----GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 625 ~lIIiDEaH~l~d~r----g~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
.+|+|||+|.+...+ +..-..+...+++.+........++.+.||
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaT 347 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEE
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEec
Confidence 689999999886533 444455666666666655556667777777
No 273
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.35 E-value=3 Score=50.71 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHh---cCC---CcEEEEccCCchhHHHHHHHHHHHHH
Q 000114 1342 FNPIQTQVFTVLY---NTD---DNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~---~~~---~nvli~ApTGSGKTl~a~l~il~~l~ 1383 (2158)
+.|+|.+++..+. .++ ..+++.||.|+|||.++. .+.+.+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 3577877776653 232 248999999999998884 3444443
No 274
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=87.34 E-value=0.84 Score=59.96 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
.+|.-|.+++..++.- ....++.|+-|.|||.+.-+.+-... . .+++.+|+++-+....+ |...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~--~------------~~~vtAP~~~a~~~l~~-~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA--G------------RAIVTAPAKASTDVLAQ-FAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS--S------------CEEEECSSCCSCHHHHH-HHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH--h------------CcEEECCCHHHHHHHHH-HhhC
Confidence 6899999999987763 23579999999999966655554331 1 36999999986664333 2210
Q ss_pred cccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHH
Q 000114 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~ 653 (2158)
.|-+..|+. +.. .....+++|||||=.+. -+.++.++.
T Consensus 240 -------------------------~i~~~~Pd~---~~~------~~~~~dlliVDEAAaIp---~pll~~ll~----- 277 (671)
T 2zpa_A 240 -------------------------KFRFIAPDA---LLA------SDEQADWLVVDEAAAIP---APLLHQLVS----- 277 (671)
T ss_dssp -------------------------GCCBCCHHH---HHH------SCCCCSEEEEETGGGSC---HHHHHHHHT-----
T ss_pred -------------------------CeEEeCchh---hhh------CcccCCEEEEEchhcCC---HHHHHHHHh-----
Confidence 133445653 211 12347999999998874 233333221
Q ss_pred HhhccccccEEEEccccCChH
Q 000114 654 IETTKEHIRLVGLSATLPNYE 674 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~ 674 (2158)
....|+||.|+..|+
T Consensus 278 ------~~~~v~~~tTv~GYE 292 (671)
T 2zpa_A 278 ------RFPRTLLTTTVQGYE 292 (671)
T ss_dssp ------TSSEEEEEEEBSSTT
T ss_pred ------hCCeEEEEecCCcCC
Confidence 334588899988776
No 275
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.02 E-value=2.3 Score=47.92 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=26.8
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHH
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ra 1401 (2158)
-.++.+|-|||||..++-.+.+.... +. +++++.|.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~---g~--kVli~k~~~d 67 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFA---KQ--HAIVFKPCID 67 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT---TC--CEEEEECC--
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC---CC--EEEEEEeccC
Confidence 35688999999998886665555443 33 7899999864
No 276
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.91 E-value=1 Score=57.14 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=76.0
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE-EcCC--cch
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE-LTGE--TAM 1431 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~-ltG~--~~~ 1431 (2158)
..++-++|+|++|+|||..++-.+.....+ +. +++|++-- .-..|+..++..... |+.... ..|. ...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~--~vl~fSlE-ms~~ql~~R~~~~~~---~i~~~~l~~g~~~l~~ 265 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD--VVNLHSLE-MGKKENIKRLIVTAG---SINAQKIKAARRDFAS 265 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TC--EEEEECSS-SCTTHHHHHHHHHHS---CCCHHHHHHTGGGTCC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CC--EEEEEECC-CCHHHHHHHHHHHHc---CCCHHHHhcccCCCCH
Confidence 346779999999999998875555544433 33 78887643 222333333332221 111100 1121 110
Q ss_pred -h-------hhcccCCcEEE-----eCHHHHHHHHhhhhcccccccee--EEEecccccccCCC--CC---hHHHHHHHH
Q 000114 1432 -D-------LKLLEKGQIII-----STPEKWDALSRRWKQRKYVQQVS--LFIIDELHLIGGQG--GP---VLEVIVSRM 1491 (2158)
Q Consensus 1432 -~-------~~~l~~~~IIV-----~TPe~l~~l~r~~~~~~~l~~v~--llIiDEaH~l~~~~--g~---~~e~~isrl 1491 (2158)
+ ...+...++.| .|++.+....+++... ..++ +||||=++.+.... .. .+..+...+
T Consensus 266 ~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~---~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~L 342 (444)
T 3bgw_A 266 EDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL 342 (444)
T ss_dssp SCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHH---SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHH
Confidence 0 11222445655 2556665555554332 2578 99999999886432 11 233455566
Q ss_pred HHHHhhcCCCceEEEeccC
Q 000114 1492 RYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1492 ~~i~~~~~~~~riV~lSAT 1510 (2158)
+.+++.+ ++.+|++|-.
T Consensus 343 k~lAke~--~v~vi~lsql 359 (444)
T 3bgw_A 343 KKMAREL--DVVVIALSQL 359 (444)
T ss_dssp HHHHHHH--TCEEEEEEEC
T ss_pred HHHHHHh--CCeEEEEecC
Confidence 6665543 6778887764
No 277
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=86.87 E-value=2.1 Score=51.72 Aligned_cols=31 Identities=35% Similarity=0.447 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCC---cEEEEccCCCchHHHHH
Q 000114 499 VQSRVYKSALSSAD---NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 499 iQ~~~i~~~l~~~~---nvlv~APTGsGKT~~a~ 529 (2158)
...+.+..++..+. .+|+.+|+|+|||.++.
T Consensus 33 ~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 33 FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 33445555555432 35777889999997763
No 278
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=86.76 E-value=2.4 Score=50.64 Aligned_cols=94 Identities=11% Similarity=0.059 Sum_probs=53.7
Q ss_pred CCCceEEEechhhhhccC-----CCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC--CCccEEEEEcCCCc
Q 000114 818 DGHVQVLVSTATLAWGVN-----LPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY--DSYGEGIIITGHSE 890 (2158)
Q Consensus 818 ~g~i~VLVaT~tla~GVd-----lP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~--d~~G~~iil~~~~~ 890 (2158)
+....|.+.|+...-|+| +-+.++||-++.-|||.. +.+|.+-||-|.|. .+.-.+|.+++...
T Consensus 168 ~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~---------d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 168 DFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQ---------KDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTS---------HHHHHHHCCC---------CCEEEEEETTS
T ss_pred cCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCC---------hHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 445566555665556676 567788888777777764 56787777777632 45567888888777
Q ss_pred HHHHHHhhcCCCcccchhhHhhHHHHHHHHHh
Q 000114 891 LRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922 (2158)
Q Consensus 891 ~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~ 922 (2158)
.+...-.+... .++.-...+...+++-+++
T Consensus 239 iEh~~l~~~~~--~~~~~~~~l~k~i~a~v~l 268 (328)
T 3hgt_A 239 IDHCRLFFGKK--FDKNSREYLENVTAAMVIL 268 (328)
T ss_dssp HHHHHHHHHHH--TCTTCHHHHHHHHHHHHHG
T ss_pred HHHHHHHccCC--CCcchHHHHHHHHHHHHHH
Confidence 66544333221 1223334555666664443
No 279
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.69 E-value=1.3 Score=54.78 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia 1397 (2158)
+++|.||+|+|||..+. .+.+.+.. ..+..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~~~---~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELYKD---KTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHTT---SCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhh---hcCeeEEEEe
Confidence 79999999999998873 34444332 1022666664
No 280
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.62 E-value=2.9 Score=47.34 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=15.1
Q ss_pred cEEEEccCCchhHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~ 1375 (2158)
.+++.||+|+|||..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999998763
No 281
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.61 E-value=2.6 Score=52.14 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=16.1
Q ss_pred CCcEEEEccCCchhHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a 1374 (2158)
...+|+.||+|+|||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 456999999999999887
No 282
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=86.51 E-value=1.3 Score=41.80 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHc
Q 000114 1982 LPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 2034 (2158)
Q Consensus 1982 LP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~ 2034 (2158)
.|++++..++.|.++| |.|+.|++..++.+..++++++-+...++.+.+.
T Consensus 9 ~p~Lse~~~~~L~~~~---I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~ 58 (83)
T 2kz3_A 9 CPGLTEEMIQLLRSHR---IKTVVDLVSADLEEVAQKCGLSYKALVALRRVLL 58 (83)
T ss_dssp STTCCHHHHHHHHHTT---CCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCC---CCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4999999999999999 9999999999999999999998877666555443
No 283
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.45 E-value=1.2 Score=53.78 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=15.4
Q ss_pred cEEEEccCCchhHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~ 1375 (2158)
++++.||+|+|||.++.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999998873
No 284
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.43 E-value=1.1 Score=55.12 Aligned_cols=90 Identities=13% Similarity=0.241 Sum_probs=50.4
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
.+..++|.+|+|+|||..++-.+...... ++ +++|+..-..+- +.+ .++++-. .
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~--~vlyi~~E~s~~-~~~---a~~~g~d-------------~---- 126 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GG--TCAFIDAEHALD-PVY---ARALGVN-------------T---- 126 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--CEEEEESSCCCC-HHH---HHHTTCC-------------G----
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CC--eEEEEECCCChh-HHH---HHHcCCC-------------H----
Confidence 45679999999999998875544443322 33 678876543222 111 1233210 0
Q ss_pred ccCCcEEE---eCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1436 LEKGQIII---STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1436 l~~~~IIV---~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
.+++| .|.+.+...++.... -..+++||||.+..+.
T Consensus 127 ---~~l~i~~~~~~e~~l~~l~~l~~---~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 127 ---DELLVSQPDNGEQALEIMELLVR---SGAIDVVVVDSVAALT 165 (366)
T ss_dssp ---GGCEEECCSSHHHHHHHHHHHHT---TTCCSEEEEECTTTCC
T ss_pred ---HHceeecCCcHHHHHHHHHHHHh---cCCCCEEEEeChHHhc
Confidence 01222 244555444443221 2468999999999875
No 285
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.32 E-value=1.3 Score=49.17 Aligned_cols=38 Identities=16% Similarity=0.049 Sum_probs=27.3
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEccc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ 1399 (2158)
..-.++.||.|||||.-.+-++-+.... +. +++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~--kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QY--KCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TC--CEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CC--eEEEEccc
Confidence 3457889999999997665565555443 33 78898887
No 286
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=86.28 E-value=0.82 Score=55.45 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2158)
.++|++||+|+|||.++-
T Consensus 52 ~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CEEEEECSSSSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 469999999999998764
No 287
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.22 E-value=0.7 Score=56.92 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCchhHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~ 1375 (2158)
...++++.||+|+|||.++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999998874
No 288
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.15 E-value=1.9 Score=53.35 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=15.1
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
+++++||+|+|||..+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999998764
No 289
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.12 E-value=2.7 Score=54.38 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=16.1
Q ss_pred CcEEEEccCCchhHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++||+|+|||.++.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 579999999999998874
No 290
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.98 E-value=1.1 Score=56.41 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=26.7
Q ss_pred cceEEeecccccccCC-------hhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~r-------g~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
-.+|.|||+|.+...| .......+..++..+......-+++.+-||
T Consensus 275 P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~AT 327 (437)
T 4b4t_L 275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327 (437)
T ss_dssp SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEE
T ss_pred CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEec
Confidence 3688999999886432 223444555555555544444444555566
No 291
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.85 E-value=3.6 Score=50.56 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.8
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
.++++||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999998764
No 292
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.58 E-value=0.68 Score=56.83 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=27.4
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
.+..++|.+|+|+|||..++-.+...... ++ +++|+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~--~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK--TCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC--CEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CC--eEEEEeC
Confidence 45679999999999999885555444332 33 6888875
No 293
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=85.48 E-value=1.8 Score=55.22 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=25.8
Q ss_pred cceEEeecccccccCChh-------hHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNRGP-------VLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~rg~-------~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
..+|+|||+|.+...++. ..+..+..++..+........++.+.||
T Consensus 109 p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 109 PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEec
Confidence 468999999998664432 2233445555444433334456666666
No 294
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=85.47 E-value=0.82 Score=53.88 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=16.5
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++.
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3579999999999998874
No 295
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.46 E-value=2 Score=52.49 Aligned_cols=26 Identities=38% Similarity=0.650 Sum_probs=18.8
Q ss_pred HHHHHcCC--CcEEEEccCCCchHHHHH
Q 000114 504 YKSALSSA--DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 504 i~~~l~~~--~nvlv~APTGsGKT~~a~ 529 (2158)
+..++..+ .+++++||+|+|||..+.
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 33344443 469999999999998764
No 296
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.42 E-value=1.1 Score=56.03 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=28.3
Q ss_pred cceEEeecccccccCC-------hhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~r-------g~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
-.+|+|||+|.+...| ......++..++..+........++.+-||
T Consensus 266 P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 266 PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 3688999999875432 223455666666665554445556666666
No 297
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.30 E-value=1.3 Score=56.58 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=27.8
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
+..++-++|.||+|+|||..++..+....... +.+++|+..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~----------g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKT----------NENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS----------SCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC----------CCcEEEEEC
Confidence 34456789999999999987766555554332 125777764
No 298
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.21 E-value=1.8 Score=48.84 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=24.6
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
.+.-+++.||+|+|||..+...+. .. ++ +++|+.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~---~~--~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LS---GK--KVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HH---CS--EEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---Hc---CC--cEEEEEC
Confidence 356689999999999987754443 22 34 6777753
No 299
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=85.16 E-value=2.8 Score=50.36 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCC--cEEEEccCCCchHHHHH
Q 000114 500 QSRVYKSALSSAD--NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 500 Q~~~i~~~l~~~~--nvlv~APTGsGKT~~a~ 529 (2158)
..+.+..++.++. +++++||+|+|||.++.
T Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 33 IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp HHHHHHHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 3334444444433 69999999999998764
No 300
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.11 E-value=1.9 Score=50.24 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCchhHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~ 1375 (2158)
...++++.||+|+|||.++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45679999999999998874
No 301
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.10 E-value=1.9 Score=54.13 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=60.5
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia--P~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
.+++++|+|+|||.++...+.. +... +.+++++. +.+.-+.++...+... .|+.+. ......
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~-l~~~----------G~kVllv~~D~~r~~a~eqL~~~~~~---~gv~~~--~~~~~~ 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYF-YKKR----------GYKVGLVAADVYRPAAYDQLLQLGNQ---IGVQVY--GEPNNQ 162 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH-HHHT----------TCCEEEEEECCSCHHHHHHHHHHHHT---TTCCEE--CCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHc----------CCeEEEEecCccchhHHHHHHHHHHh---cCCcee--eccccC
Confidence 4788999999999876443332 2221 22565554 5565555555555443 344332 111111
Q ss_pred CHhhhccccEEEcchhHH--HHHHhccCCCccccccceEEeecccccc--cCChhhHHHHHHHHHHHHhhccccccEEEE
Q 000114 591 TRQQIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLH--DNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (2158)
Q Consensus 591 ~~~~~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~lIIiDEaH~l~--d~rg~~le~iv~r~~~~~~~~~~~~riv~l 666 (2158)
.|..+ +.+.. . .....++||||++-+++ .... .+.. +..+ .....+..-++.+
T Consensus 163 -------------dp~~i~~~al~~-a----~~~~~DvvIIDTaGr~~~~~d~~-lm~e-l~~i---~~~~~pd~vlLVl 219 (433)
T 3kl4_A 163 -------------NPIEIAKKGVDI-F----VKNKMDIIIVDTAGRHGYGEETK-LLEE-MKEM---YDVLKPDDVILVI 219 (433)
T ss_dssp -------------CHHHHHHHHHHH-T----TTTTCSEEEEEECCCSSSCCTTH-HHHH-HHHH---HHHHCCSEEEEEE
T ss_pred -------------CHHHHHHHHHHH-H----HhcCCCEEEEECCCCccccCCHH-HHHH-HHHH---HHhhCCcceEEEE
Confidence 12221 11211 1 12457999999998765 3221 1221 2222 2223445566778
Q ss_pred ccccC
Q 000114 667 SATLP 671 (2158)
Q Consensus 667 SATlp 671 (2158)
+|+..
T Consensus 220 Da~~g 224 (433)
T 3kl4_A 220 DASIG 224 (433)
T ss_dssp EGGGG
T ss_pred eCccc
Confidence 88754
No 302
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=85.06 E-value=1.4 Score=53.56 Aligned_cols=144 Identities=13% Similarity=0.166 Sum_probs=72.8
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCC
Q 000114 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd 587 (2158)
+..++-+++.|++|+|||..++-.+...... +.+++|++.--. ..|+..++.......+..- ...|.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-----------g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~-l~~g~ 109 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND-----------DRGVAVFSLEMS-AEQLALRALSDLTSINMHD-LESGR 109 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSSC-HHHHHHHHHHHHHCCCHHH-HHHTC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHH-HhcCC
Confidence 3445678999999999998776555554432 236787764322 3455544433222111100 01122
Q ss_pred CccCHh--------hhccccEEE-cch----hHHHHHHhccCCCcccc-ccceEEeeccccccc-----CChhhHHHHHH
Q 000114 588 QTLTRQ--------QIEETQIIV-TTP----EKWDIITRKSGDRTYTQ-LVKLLIIDEIHLLHD-----NRGPVLESIVA 648 (2158)
Q Consensus 588 ~~~~~~--------~~~~~~IiV-~TP----ekld~l~r~~~~~~~l~-~v~lIIiDEaH~l~d-----~rg~~le~iv~ 648 (2158)
.+.... ......+.| .+| +.+....++.. .-. .+++||||-++++.. .+...+..+..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~---~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr 186 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLK---SQHKELGIAFIDYLQLMSGSKATKERHEQIAEISR 186 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHH---HHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHH---HhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHH
Confidence 211110 112344555 344 33322222211 112 589999999998854 13334555555
Q ss_pred HHHHHHhhccccccEEEEccc
Q 000114 649 RTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 649 r~~~~~~~~~~~~riv~lSAT 669 (2158)
.+..... ..++.+|++|-.
T Consensus 187 ~LK~lAk--el~vpVi~lsQl 205 (338)
T 4a1f_A 187 ELKTLAR--ELEIPIIALVQL 205 (338)
T ss_dssp HHHHHHH--HHTSCEEEEEEC
T ss_pred HHHHHHH--HcCCeEEEEEec
Confidence 5544333 346778888765
No 303
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=85.02 E-value=2.1 Score=53.68 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=62.3
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia--P~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
.+++++|+|+|||.++.-.+. .+... +.+++++. |.++-+.++...+... .|+.+... +..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~~~----------G~kVllv~~D~~R~aa~eqL~~~~~~---~gvpv~~~--~~~- 164 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQKR----------GYKVGVVCSDTWRPGAYHQLRQLLDR---YHIEVFGN--PQE- 164 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHTT----------TCCEEEEECCCSSTHHHHHHHHHHGG---GTCEEECC--TTC-
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHHHC----------CCeEEEEeCCCcchhHHHHHHHHHHh---cCCcEEec--CCC-
Confidence 488999999999987643332 23221 23566665 6677676666666553 34544321 111
Q ss_pred CHhhhccccEEEcchhHH--HHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 591 TRQQIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 591 ~~~~~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
..|..+ +.+... .-..+++||||.+=+++... .++..+........+..-++.++|
T Consensus 165 ------------~dp~~i~~~al~~a-----~~~~~DvVIIDTaGrl~~d~-----~lm~el~~i~~~~~pd~vlLVvDA 222 (443)
T 3dm5_A 165 ------------KDAIKLAKEGVDYF-----KSKGVDIIIVDTAGRHKEDK-----ALIEEMKQISNVIHPHEVILVIDG 222 (443)
T ss_dssp ------------CCHHHHHHHHHHHH-----HHTTCSEEEEECCCCSSCCH-----HHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred ------------CCHHHHHHHHHHHH-----HhCCCCEEEEECCCcccchH-----HHHHHHHHHHHhhcCceEEEEEeC
Confidence 123221 111111 11237899999996544221 122222222222344556777888
Q ss_pred ccC
Q 000114 669 TLP 671 (2158)
Q Consensus 669 Tlp 671 (2158)
|..
T Consensus 223 ~~g 225 (443)
T 3dm5_A 223 TIG 225 (443)
T ss_dssp GGG
T ss_pred CCc
Confidence 864
No 304
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.98 E-value=2.5 Score=50.30 Aligned_cols=19 Identities=47% Similarity=0.690 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
..+++++||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999998764
No 305
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=84.88 E-value=0.49 Score=44.92 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=45.9
Q ss_pred CCccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchh-HHHHHHHHhc
Q 000114 1142 TPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM-GRTLHKFVHQ 1195 (2158)
Q Consensus 1142 ~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 1195 (2158)
+.|..+||||+...++|-++==+++.+...+.+||.++++ .+. ++.|++++|.
T Consensus 18 s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig-~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS-CHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC-chHHHHHHHHHHHh
Confidence 5689999999999999987644788999999999999998 556 9999999974
No 306
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.85 E-value=1.3 Score=53.02 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=17.6
Q ss_pred cCCCcEEEEccCCchhHHHHH
Q 000114 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~ 1375 (2158)
.....+++.||+|+|||.++-
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHH
Confidence 345679999999999998874
No 307
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=84.74 E-value=2 Score=52.75 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=16.5
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4579999999999998873
No 308
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.73 E-value=1.3 Score=55.14 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=27.8
Q ss_pred ceEEeecccccccCC-------hhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 625 KLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 625 ~lIIiDEaH~l~d~r-------g~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
.+|.|||+|.+...| .......+..++..+......-.++.+-||
T Consensus 277 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaAT 328 (437)
T 4b4t_I 277 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMAT 328 (437)
T ss_dssp EEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEE
T ss_pred cEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeC
Confidence 589999999886433 123444555555555544455566666677
No 309
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.71 E-value=2.2 Score=48.93 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=26.0
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhc---CCCceEEEEEcc
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAP 1398 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---~~~~~~~v~IaP 1398 (2158)
.+..+++.+|+|+|||..+...+...+.... ..+ .++|+.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~--~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG--KAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSS--EEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCC--eEEEEEC
Confidence 4667999999999999887554433222100 123 6787754
No 310
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.66 E-value=1.5 Score=52.82 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=15.5
Q ss_pred cEEEEccCCchhHHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l 1376 (2158)
++++.||+|+|||.++..
T Consensus 44 ~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp CEEEECSTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 599999999999987743
No 311
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=84.39 E-value=1.8 Score=48.00 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=33.1
Q ss_pred HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000114 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2158)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~k 560 (2158)
+-....++++..++|.|||.+|+-..++.+..+ .+|+++.-.+
T Consensus 24 ~~~~~g~i~v~tG~GkGKTTaA~GlalRA~g~G-----------~rV~~vQF~K 66 (196)
T 1g5t_A 24 AQEERGIIIVFTGNGKGKTTAAFGTAARAVGHG-----------KNVGVVQFIK 66 (196)
T ss_dssp ---CCCCEEEEESSSSCHHHHHHHHHHHHHHTT-----------CCEEEEESSC
T ss_pred ccccCceEEEECCCCCCHHHHHHHHHHHHHHCC-----------CeEEEEEeeC
Confidence 333456899999999999999998889988764 3788886555
No 312
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=84.34 E-value=2.6 Score=52.84 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=65.8
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia--P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
..+++++|+|+|||..+.- +...+.. .+. +++++. |.|.-+.++...|.... |+.+..... .
T Consensus 101 ~vIlivG~~G~GKTTt~~k-LA~~l~~--~G~--kVllv~~D~~R~aa~eqL~~~~~~~----gvpv~~~~~--~----- 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK-LARYFQK--RGY--KVGVVCSDTWRPGAYHQLRQLLDRY----HIEVFGNPQ--E----- 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH-HHHHHHT--TTC--CEEEEECCCSSTHHHHHHHHHHGGG----TCEEECCTT--C-----
T ss_pred eEEEEECcCCCCHHHHHHH-HHHHHHH--CCC--eEEEEeCCCcchhHHHHHHHHHHhc----CCcEEecCC--C-----
Confidence 3578899999999987733 3333433 233 555554 66776777777666433 444432111 1
Q ss_pred ccCCcEEEeCHHHHH-HHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1436 LEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1436 l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
..|..+. ..+.... -...+++|||.+=.+.. -+.....++.+.....+..-++.++|+..
T Consensus 165 --------~dp~~i~~~al~~a~----~~~~DvVIIDTaGrl~~-----d~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 165 --------KDAIKLAKEGVDYFK----SKGVDIIIVDTAGRHKE-----DKALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp --------CCHHHHHHHHHHHHH----HTTCSEEEEECCCCSSC-----CHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred --------CCHHHHHHHHHHHHH----hCCCCEEEEECCCcccc-----hHHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 1233221 1222211 13478999998854421 12244445544444445666777888754
No 313
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.33 E-value=2 Score=52.57 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=27.6
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEccc
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ 1399 (2158)
.+..++|.+|+|||||..+...+...... ++ +++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~--~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GG--IAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--CEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC--eEEEEECC
Confidence 45679999999999998886555444332 44 67887643
No 314
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.29 E-value=0.85 Score=57.22 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=27.7
Q ss_pred cceEEeecccccccCCh-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~rg-------~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
-.+|.|||+|.+...|+ ......+..++..+......-+++.+-||
T Consensus 275 P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaT 327 (434)
T 4b4t_M 275 PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAAT 327 (434)
T ss_dssp SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEEC
T ss_pred CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeC
Confidence 36889999998864331 23344555555555554445556666666
No 315
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.13 E-value=1.7 Score=50.08 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=64.9
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC-------CCcEEEEEcCC
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG-------LGMRVVELTGE 1428 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~-------~g~~v~~ltG~ 1428 (2158)
.+..++|+|++|+|||..++-.+.+...+. +. .++|+.-. .-..+..+++. .++.. ..+.+......
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~--~v~~~s~E-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~ 102 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GE--PGVFVTLE-ERARDLRREMA-SFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CC--CEEEEESS-SCHHHHHHHHH-TTTCCHHHHHHTTSEEEEC----
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CC--Cceeeccc-CCHHHHHHHHH-HcCCChHHHHhcCcchhhhhHHH
Confidence 467799999999999987765555444431 23 56776532 12333333333 11110 01111111000
Q ss_pred cchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC--CCCChHHHHHHHHHHHHhhcCCCceEEE
Q 000114 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEVIVSRMRYIASQVENKIRIVA 1506 (2158)
Q Consensus 1429 ~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~--~~g~~~e~~isrl~~i~~~~~~~~riV~ 1506 (2158)
..............-.+++.+....+... .....+++|+|-...+.. ..-..+..++..++.+.... ++.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~--~i~vi~ 177 (251)
T 2zts_A 103 VVGLPSEEKFVLEDRFNVDNFLRYIYRVV---KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM--GVTTIL 177 (251)
T ss_dssp ---------------CCHHHHHHHHHHHH---HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH--CCEEEE
T ss_pred HhhcccchhccccccccHHHHHHHHHHHH---HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc--CCCeEE
Confidence 00000000000111123333333222221 224578999999987643 22334555666666665543 566666
Q ss_pred ecc
Q 000114 1507 LST 1509 (2158)
Q Consensus 1507 lSA 1509 (2158)
++-
T Consensus 178 ~~q 180 (251)
T 2zts_A 178 TTE 180 (251)
T ss_dssp EEC
T ss_pred EEE
Confidence 654
No 316
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.01 E-value=0.69 Score=55.32 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2158)
..++++||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358999999999998764
No 317
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.99 E-value=1.6 Score=55.36 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=31.4
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
..++-++|+|++|+|||..++-.+....... +.+++|+..--. ..|+..++
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~----------g~~vl~~slE~~-~~~l~~R~ 248 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKE----------GVGVGIYSLEMP-AAQLTLRM 248 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTT----------CCCEEEEESSSC-HHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEECCCC-HHHHHHHH
Confidence 3456689999999999987766555554321 225788765322 23444443
No 318
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.92 E-value=3.9 Score=46.95 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=33.1
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
.+.-++++|++|+|||..++-.+.+...... .+++|+.-.-. ..++.+++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~----------~~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG----------EPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC----------CCEEEEESSSC-HHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC----------CCceeecccCC-HHHHHHHHHH
Confidence 3567899999999999887766665544431 24777764322 4455555443
No 319
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.92 E-value=1.1 Score=54.42 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=16.4
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3579999999999998873
No 320
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.86 E-value=2.2 Score=50.90 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=16.0
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
...+++.||+|+|||..+.
T Consensus 36 p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CSEEEEEECTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468999999999998874
No 321
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.78 E-value=1.1 Score=55.01 Aligned_cols=19 Identities=42% Similarity=0.684 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
..++|++||+|+|||.++-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999998764
No 322
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.59 E-value=3.2 Score=51.09 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=24.6
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia 1397 (2158)
..+++|.||+|+|||..+.. +.+.+...... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~-l~~~~~~~~~~-~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF-VLSKLHKKFLG-KFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH-HHHHHHHHTCS-SCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHHhcC-CceEEEEE
Confidence 46799999999999987743 44444331110 22566665
No 323
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.58 E-value=0.9 Score=54.90 Aligned_cols=52 Identities=15% Similarity=0.038 Sum_probs=32.8
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
..++-++|+|++|+|||..++..+......+ .+++|++-- .=..|+..++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-----------~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND-----------DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-----------CEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEECC-CCHHHHHHHHHH
Confidence 3456789999999999987766555544321 368888643 223444444443
No 324
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.57 E-value=1.6 Score=53.65 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=28.8
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
....++|.+|+|+|||..++-.+......+ .+++|+..-.++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g-----------~~vlyi~~E~s~ 114 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG-----------GTCAFIDAEHAL 114 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSCCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC-----------CeEEEEECCCCh
Confidence 346689999999999987766555544321 268888765443
No 325
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.54 E-value=2.9 Score=51.49 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2158)
..+++++||+|+|||..+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45799999999999987643
No 326
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.52 E-value=1.1 Score=53.37 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCchhHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~ 1375 (2158)
...++++.||+|+|||.++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 35689999999999998873
No 327
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.39 E-value=6.9 Score=44.16 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=17.8
Q ss_pred CCCcEEEEccCCCchHHHHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~i 532 (2158)
.++.+++.||+|||||..+...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 35678999999999997665444
No 328
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.36 E-value=1.6 Score=53.47 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=29.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
....+++.+|+|+|||..++..+......+ .+++|+..--++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g-----------~~vlyid~E~s~ 103 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG-----------KTCAFIDAEHAL 103 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-----------CeEEEEeCCCCc
Confidence 356789999999999998876665554322 268888764433
No 329
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=83.14 E-value=0.97 Score=40.45 Aligned_cols=54 Identities=15% Similarity=0.333 Sum_probs=44.3
Q ss_pred CCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHH-HHHHHHHHcc
Q 000114 1976 DSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQ-LLDIARFCNR 2035 (2158)
Q Consensus 1976 ~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~-~~~v~~~~~~ 2035 (2158)
.+.|..|||||+...+.|-++ +.|+.++..++.++..++++ ... .+.|.++++.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~----Fgs~~~i~~As~eeL~~vig--~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHH----VKNIAELAALSQDELTSILG--NAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHH----CSSHHHHHTCCHHHHHHHHS--CHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHH----cCCHHHHHHCCHHHHHHHcC--chHHHHHHHHHHhc
Confidence 356889999999999987654 67999999999999999844 555 7888988863
No 330
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.05 E-value=1.8 Score=51.90 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHHcCC--CcEEEEccCCCchHHHHHH
Q 000114 503 VYKSALSSA--DNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 503 ~i~~~l~~~--~nvlv~APTGsGKT~~a~l 530 (2158)
.+..++..+ .+++++||+|+|||..+..
T Consensus 32 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 32 RLQQIAKDGNMPHMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHH
Confidence 344444433 3599999999999977643
No 331
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=83.00 E-value=5.4 Score=49.62 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=16.4
Q ss_pred CCcEEE--EccCCchhHHHHHH
Q 000114 1357 DDNVLV--AAPTGSGKTICSEF 1376 (2158)
Q Consensus 1357 ~~nvli--~ApTGSGKTl~a~l 1376 (2158)
..+++| .||+|+|||.++..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHH
Confidence 457888 99999999987743
No 332
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=82.92 E-value=1.3 Score=58.31 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1341 HFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
.+|.-|.+++..++.- ....++.|+-|.|||.+.-+++-. + .+ ++++.+|+.+-+....+ +. +.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~-----~~--~~~vtAP~~~a~~~l~~-~~---~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-I-----AG--RAIVTAPAKASTDVLAQ-FA---GE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-S-----SS--CEEEECSSCCSCHHHHH-HH---GG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-H-----Hh--CcEEECCCHHHHHHHHH-Hh---hC---
Confidence 6899999999998762 235789999999999665444432 2 12 46999999886654332 11 10
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcC
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
.|-+..|..+ .. ...+.+++|||||=.|. +..++.+..
T Consensus 240 --------------------~i~~~~Pd~~---~~------~~~~~dlliVDEAAaIp----------~pll~~ll~--- 277 (671)
T 2zpa_A 240 --------------------KFRFIAPDAL---LA------SDEQADWLVVDEAAAIP----------APLLHQLVS--- 277 (671)
T ss_dssp --------------------GCCBCCHHHH---HH------SCCCCSEEEEETGGGSC----------HHHHHHHHT---
T ss_pred --------------------CeEEeCchhh---hh------CcccCCEEEEEchhcCC----------HHHHHHHHh---
Confidence 1334456542 11 23458999999999885 222333322
Q ss_pred CCceEEEeccCCCCh
Q 000114 1500 NKIRIVALSTSLANA 1514 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~ 1514 (2158)
....|+||.|+...
T Consensus 278 -~~~~v~~~tTv~GY 291 (671)
T 2zpa_A 278 -RFPRTLLTTTVQGY 291 (671)
T ss_dssp -TSSEEEEEEEBSST
T ss_pred -hCCeEEEEecCCcC
Confidence 34458888888654
No 333
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.85 E-value=1.7 Score=54.63 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=27.5
Q ss_pred cceEEeecccccccCCh-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~rg-------~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
-.+|+|||++.+...|+ ......+..++..+......-.++.+-||
T Consensus 303 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaAT 355 (467)
T 4b4t_H 303 ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFAT 355 (467)
T ss_dssp SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEEC
T ss_pred CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 36899999998865331 22333444455555444455566777677
No 334
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=82.82 E-value=0.85 Score=41.74 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=44.6
Q ss_pred CccccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcCc-hhHHHHHHHHhcCC
Q 000114 1143 PLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFP 1197 (2158)
Q Consensus 1143 ~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~P 1197 (2158)
+|.+++|+++..+.+|..+|+ +++++...+.++|..+.+.. ..+..|...++..|
T Consensus 8 ~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~~~ 64 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNIC 64 (70)
T ss_dssp HHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHHcc
Confidence 588999999999999999998 89999999999999998864 34456665555433
No 335
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=82.52 E-value=1.1 Score=54.95 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2158)
.++|++||+|+|||.++-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 469999999999998774
No 336
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=82.48 E-value=1.6 Score=53.42 Aligned_cols=41 Identities=34% Similarity=0.310 Sum_probs=27.7
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raL 1402 (2158)
+..++|.+|+|||||..+...+. .+.. .++ +++|+..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~-~~~~--~gg--~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIA-EAQK--MGG--VAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH-HHHH--TTC--CEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-HHHh--cCC--eEEEEeccccc
Confidence 56789999999999987744443 3332 244 78888765443
No 337
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.34 E-value=3.8 Score=51.32 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=16.0
Q ss_pred CCcEEEEccCCchhHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a 1374 (2158)
...+|+.||+|+|||+.+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999887
No 338
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.94 E-value=4.1 Score=45.75 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTIL 533 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il 533 (2158)
++-+++.||+|+|||..+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999987655444
No 339
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=81.92 E-value=1.2 Score=52.95 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=53.5
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccC
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~ 1438 (2158)
.++|.+|+|+|||..++-.+...... ..++ +++||..-.++.... ++ +++ +. .
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~--~vlyId~E~s~~~~r---a~-~lG----vd----------------~ 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDA--VCLFYDSEFGITPAY---LR-SMG----VD----------------P 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTC--EEEEEESSCCCCHHH---HH-HTT----CC----------------G
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCc--eEEEEeccchhhHHH---HH-HhC----CC----------------H
Confidence 58999999999999887666655543 2244 899998766654332 22 443 11 0
Q ss_pred CcEEEeCH---HHH-HHHHhhhhccccccceeEEEeccccccc
Q 000114 1439 GQIIISTP---EKW-DALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1439 ~~IIV~TP---e~l-~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
.+++++.| +.. ..+...... ..-..+++||||=+..+.
T Consensus 83 d~llv~~~~~~E~~~l~i~~~l~~-i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ERVIHTPVQSLEQLRIDMVNQLDA-IERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp GGEEEEECSBHHHHHHHHHHHHHT-CCTTCCEEEEEECSTTCB
T ss_pred HHeEEEcCCCHHHHHHHHHHHHHH-hhccCceEEEEecccccc
Confidence 13444444 333 222222100 112468999999999774
No 340
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.74 E-value=1.3 Score=53.13 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2158)
....++++||+|+|||..+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 34579999999999998764
No 341
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.42 E-value=2.1 Score=52.21 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.8
Q ss_pred CcEEEEccCCchhHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~ 1375 (2158)
.++++.||+|+|||.++.
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999998873
No 342
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=81.16 E-value=3.4 Score=49.49 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=25.3
Q ss_pred cccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEc
Q 000114 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2158)
Q Consensus 620 ~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lS 667 (2158)
.....+++||||+|.+... ..+ .+++.++..++...+|+.+
T Consensus 79 ~~~~~kvviIdead~lt~~---a~n----aLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 79 ELYTRKYVIVHDCERMTQQ---AAN----AFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSSEEEEETTGGGBCHH---HHH----HTHHHHHSCCTTEEEEEEE
T ss_pred ccCCceEEEeccHHHhCHH---HHH----HHHHHHhCCCCCeEEEEEE
Confidence 3456789999999998532 222 2344455555566666654
No 343
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.15 E-value=4.2 Score=51.03 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=16.2
Q ss_pred CCcEEEEccCCchhHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a 1374 (2158)
...+|+.||+|+|||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 466999999999999887
No 344
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.11 E-value=4 Score=51.19 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=16.2
Q ss_pred CCcEEEEccCCchhHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a 1374 (2158)
...+|+.||+|+|||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 467999999999999887
No 345
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.97 E-value=2.6 Score=51.51 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=28.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
.++.+++.+|.|+|||..++..+......+ .+++|+.--..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g-----------~~vlyi~~E~~ 100 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG-----------GIAAFIDAEHA 100 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC-----------CeEEEEECCCC
Confidence 356689999999999988776665554322 26888765433
No 346
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.60 E-value=6 Score=49.20 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=16.1
Q ss_pred CCcEEEEccCCchhHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a 1374 (2158)
...+|+.||+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 456999999999999887
No 347
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=80.44 E-value=2.3 Score=48.29 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=28.6
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ra 1401 (2158)
+.-.++.||-|||||..++-.+.+.... +. +++++.|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~---g~--kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA---QY--KCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT---TC--CEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---CC--eEEEEeecCC
Confidence 3446788999999998876666655433 33 7888888753
No 348
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=80.33 E-value=2.5 Score=51.61 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred CccccC--CCCHHHHHHHHhCCC-CchhhccCChHHhhhhhc
Q 000114 1143 PLRQFN--GIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (2158)
Q Consensus 1143 ~l~q~~--~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 1181 (2158)
|+.+++ |+++..+.+|.++|+ +++++...++.+|.++.+
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~ 67 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKG 67 (343)
T ss_dssp ------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhC
Confidence 677777 899999999999997 566666667777766654
No 349
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=80.16 E-value=1.7 Score=55.24 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
..++|++||+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998764
No 350
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=80.07 E-value=1.3 Score=42.10 Aligned_cols=53 Identities=15% Similarity=0.333 Sum_probs=44.0
Q ss_pred CccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHH-HHHHHHHHcc
Q 000114 1977 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQ-LLDIARFCNR 2035 (2158)
Q Consensus 1977 s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~-~~~v~~~~~~ 2035 (2158)
+.|..|||||+...++|-++ +.++.+|..++.++...+++ ... .+.|.+|++.
T Consensus 18 s~L~~IpGIG~kr~~~LL~~----FgSl~~i~~AS~eEL~~vig--~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHH----VKNIAELAALSQDELTSILG--NAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHHH----SSCHHHHHHSCHHHHHHHHS--CHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHHHHH----cCCHHHHHHCCHHHHHHHhC--chHHHHHHHHHHHh
Confidence 45889999999999987654 67999999999999999854 555 7888998863
No 351
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=80.03 E-value=3.2 Score=52.53 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=71.0
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEE-EeC
Q 000114 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE-LSG 586 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~-l~G 586 (2158)
+..++-++|+|++|+|||..++-.+.+....+ .+++|++---. ..|+..++..... |+.... ..|
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g-----------~~vl~fSlEms-~~ql~~R~~~~~~--~i~~~~l~~g 259 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND-----------DVVNLHSLEMG-KKENIKRLIVTAG--SINAQKIKAA 259 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTT-----------CEEEEECSSSC-TTHHHHHHHHHHS--CCCHHHHHHT
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcC-----------CEEEEEECCCC-HHHHHHHHHHHHc--CCCHHHHhcc
Confidence 34456789999999999988776666655431 26888864322 2344444332211 111100 112
Q ss_pred C--CccCH--------hhhccccEEE-c----chhHHHHHHhccCCCccccccc--eEEeecccccccC-----ChhhHH
Q 000114 587 D--QTLTR--------QQIEETQIIV-T----TPEKWDIITRKSGDRTYTQLVK--LLIIDEIHLLHDN-----RGPVLE 644 (2158)
Q Consensus 587 d--~~~~~--------~~~~~~~IiV-~----TPekld~l~r~~~~~~~l~~v~--lIIiDEaH~l~d~-----rg~~le 644 (2158)
. ..... .......+.| - |++.+....++.. .-..++ +||||=++.+... +...+.
T Consensus 260 ~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~---~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~ 336 (444)
T 3bgw_A 260 RRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTK---RKNPGKRVIVMIDYLQLLEPAKANDSRTNQIS 336 (444)
T ss_dssp GGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHH---HHSCSSCEEEEEECSTTSBCSCSSSCHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH---HHhCCCCeEEEEecHHhccCCCCCCCHHHHHH
Confidence 1 11110 0112345554 2 3343322222221 112578 9999999988532 222344
Q ss_pred HHHHHHHHHHhhccccccEEEEccc
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
.+...+..... ..++.++++|-.
T Consensus 337 ~i~~~Lk~lAk--e~~v~vi~lsql 359 (444)
T 3bgw_A 337 QISRDLKKMAR--ELDVVVIALSQL 359 (444)
T ss_dssp HHHHHHHHHHH--HHTCEEEEEEEC
T ss_pred HHHHHHHHHHH--HhCCeEEEEecC
Confidence 44444433322 346777777764
No 352
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=80.03 E-value=2.1 Score=54.25 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.9
Q ss_pred CcEEEEccCCchhHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~ 1375 (2158)
.++++.||+|+|||.++.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999998874
No 353
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=79.97 E-value=2.2 Score=51.67 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred hcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC-----CCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCC
Q 000114 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-----TGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGE 1428 (2158)
Q Consensus 1354 ~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~-----~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~ 1428 (2158)
+..+..++|.||+|+|||..+...+...... . ++ +++|+.--..+-.+....+.+.++-.
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~--~~~gg~~~--~vlyi~~e~~~~~~~l~~~~~~~g~~----------- 168 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLP--PEKGGLSG--KAVYIDTEGTFRWERIENMAKALGLD----------- 168 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSC--GGGTCCSC--EEEEEESSSCCCHHHHHHHHHHTTCC-----------
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcc--cccCCCCC--eEEEEECCCCCCHHHHHHHHHHhCCC-----------
Q ss_pred cchhhhcccCCcEEEe-CHHHHHHHHhhhhccccc-cceeEEEecccccccC----------CCCChHHHHHHHHHHHHh
Q 000114 1429 TAMDLKLLEKGQIIIS-TPEKWDALSRRWKQRKYV-QQVSLFIIDELHLIGG----------QGGPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1429 ~~~~~~~l~~~~IIV~-TPe~l~~l~r~~~~~~~l-~~v~llIiDEaH~l~~----------~~g~~~e~~isrl~~i~~ 1496 (2158)
....+.+-.+.=. +++.+..++........- .++++||||.+..+.. .+...+..++..++.+..
T Consensus 169 ---~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~ 245 (324)
T 2z43_A 169 ---IDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAE 245 (324)
T ss_dssp ---HHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCCceEEEec
Q 000114 1497 QVENKIRIVALS 1508 (2158)
Q Consensus 1497 ~~~~~~riV~lS 1508 (2158)
.. ++.+|+.+
T Consensus 246 ~~--~~~Vi~~n 255 (324)
T 2z43_A 246 VY--DIAVIITN 255 (324)
T ss_dssp HH--TCEEEEEE
T ss_pred Hh--CCEEEEEc
No 354
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.60 E-value=5.5 Score=48.51 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=15.1
Q ss_pred cEEEEccCCchhHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~ 1375 (2158)
++++.||+|+|||..+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999998773
No 355
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=79.49 E-value=3.3 Score=46.56 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=25.8
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
-.++++|-|||||..++-.+.+.... +.+++++.|.+.
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~-----------g~kvli~kp~~D 67 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYA-----------KQKVVVFKPAID 67 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-----------TCCEEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-----------CCceEEEEeccC
Confidence 35889999999997666555444332 247899999764
No 356
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=79.43 E-value=18 Score=43.56 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEccCCchhHHHHH
Q 000114 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1344 ~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~ 1375 (2158)
.-+.+.+.. +.. ..++|.||.|+|||....
T Consensus 19 ~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 19 EKEIEKLKG-LRA-PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp HHHHHHHHH-TCS-SEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHH-hcC-CcEEEECCCCCCHHHHHH
Confidence 334444555 554 579999999999997763
No 357
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.20 E-value=2 Score=63.04 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=35.1
Q ss_pred HHHHhc-----CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1350 FTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1350 ~~~l~~-----~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
+..++. .+.++++++|+|+|||..+...+.....+ +. +++|+..-.++..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~---G~--~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK--TCAFIDAEHALDP 1469 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TC--CEEEECTTSCCCH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CC--cEEEEEcccccCH
Confidence 566655 57899999999999999985555544332 44 7888886644333
No 358
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=79.03 E-value=6.5 Score=44.18 Aligned_cols=40 Identities=15% Similarity=-0.028 Sum_probs=26.3
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ra 1401 (2158)
+.-.++++|-|||||...+-.+.+.... +. +++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~--kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA---KQ--KVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TC--CEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc---CC--ceEEEEeccC
Confidence 4447889999999997665444443322 33 7899999764
No 359
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.81 E-value=2.9 Score=50.96 Aligned_cols=116 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhcCCCc--EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1343 NPIQTQVFTVLYNTDDN--VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1343 ~~iQ~q~~~~l~~~~~n--vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.....+.+...+..++- +++.||+|+|||.++ .++.+.+....... .++.+-+....-....+.....+...
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla-~~la~~l~~~~~~~--~~~~~~~~~~~~~~~ir~~i~~~~~~--- 103 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTI-VALAREIYGKNYSN--MVLELNASDDRGIDVVRNQIKDFAST--- 103 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHH-HHHHHHHHTTSHHH--HEEEECTTSCCSHHHHHTHHHHHHHB---
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHH-HHHHHHHcCCCccc--eEEEEcCcccccHHHHHHHHHHHHhh---
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~ 1500 (2158)
........+++|+||+|.+... ....+.......+.
T Consensus 104 -------------------------------------~~~~~~~~~viiiDe~~~l~~~-------~~~~L~~~le~~~~ 139 (340)
T 1sxj_C 104 -------------------------------------RQIFSKGFKLIILDEADAMTNA-------AQNALRRVIERYTK 139 (340)
T ss_dssp -------------------------------------CCSSSCSCEEEEETTGGGSCHH-------HHHHHHHHHHHTTT
T ss_pred -------------------------------------cccCCCCceEEEEeCCCCCCHH-------HHHHHHHHHhcCCC
Q ss_pred CceEEEec
Q 000114 1501 KIRIVALS 1508 (2158)
Q Consensus 1501 ~~riV~lS 1508 (2158)
..++++.+
T Consensus 140 ~~~~il~~ 147 (340)
T 1sxj_C 140 NTRFCVLA 147 (340)
T ss_dssp TEEEEEEE
T ss_pred CeEEEEEe
No 360
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=78.65 E-value=1.3 Score=46.72 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.5
Q ss_pred HhcCCCcEEEEccCCchhHHHHH
Q 000114 1353 LYNTDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1353 l~~~~~nvli~ApTGSGKTl~a~ 1375 (2158)
+..++.++++.||+|+|||.++.
T Consensus 20 ~a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 20 LSETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp HTTCCSCEEEESSTTSSHHHHHH
T ss_pred HhCCCCCEEEECCCCCCHHHHHH
Confidence 34567889999999999998884
No 361
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=78.45 E-value=1.3 Score=46.84 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=19.1
Q ss_pred HHcCCCcEEEEccCCCchHHHHH
Q 000114 507 ALSSADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~ 529 (2158)
+...+.++++.||+|+|||.++-
T Consensus 20 ~a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 20 LSETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp HTTCCSCEEEESSTTSSHHHHHH
T ss_pred HhCCCCCEEEECCCCCCHHHHHH
Confidence 34567789999999999998774
No 362
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=78.26 E-value=5.1 Score=50.99 Aligned_cols=19 Identities=32% Similarity=0.712 Sum_probs=16.3
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
...+++.+|+|+|||+.+-
T Consensus 49 p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999998873
No 363
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.20 E-value=1.3 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=18.2
Q ss_pred HHcCCCcEEEEccCCCchHHHH
Q 000114 507 ALSSADNILLCAPTGAGKTNVA 528 (2158)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a 528 (2158)
+...+.++++++|+|+|||.++
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHH
T ss_pred HhCCCCcEEEECCCCccHHHHH
Confidence 3456778999999999999765
No 364
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=78.04 E-value=2.5 Score=53.68 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=16.6
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998873
No 365
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=77.95 E-value=1.3 Score=46.60 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=18.3
Q ss_pred hcCCCcEEEEccCCchhHHHH
Q 000114 1354 YNTDDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1354 ~~~~~nvli~ApTGSGKTl~a 1374 (2158)
..++.++++.+|+|+|||.++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 456788999999999999876
No 366
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.66 E-value=7.7 Score=48.71 Aligned_cols=19 Identities=37% Similarity=0.894 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCchhHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a 1374 (2158)
....+|+.||+|+|||+.+
T Consensus 242 pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCSEEEECSCTTSSHHHHH
T ss_pred CCCceEeeCCCCCcHHHHH
Confidence 4567999999999999887
No 367
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=77.17 E-value=4.7 Score=48.83 Aligned_cols=19 Identities=47% Similarity=0.836 Sum_probs=16.1
Q ss_pred CcEEEEccCCCchHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l 530 (2158)
.+++++||+|+|||.++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4799999999999987643
No 368
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.10 E-value=7.9 Score=47.10 Aligned_cols=17 Identities=35% Similarity=0.741 Sum_probs=14.8
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
+++++||+|+|||..+-
T Consensus 38 ~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 59999999999997654
No 369
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.08 E-value=2 Score=63.18 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=37.5
Q ss_pred HHHHHc-----CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 504 YKSALS-----SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 504 i~~~l~-----~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
++.++. ...++++++|+|+|||..+...+...... +.+++|+..--++....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~-----------G~~v~Fi~~e~~~~~l~ 1471 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----------GKTCAFIDAEHALDPIY 1471 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-----------TCCEEEECTTSCCCHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-----------CCcEEEEEcccccCHHH
Confidence 666665 46789999999999999887666655433 23789998775554444
No 370
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=76.95 E-value=5.4 Score=54.47 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=28.8
Q ss_pred cceEEeecccccccC----ChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 624 VKLLIIDEIHLLHDN----RGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~----rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
..++++||+|.+... .+.....++..++..+........++.+.||-
T Consensus 298 p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn 348 (806)
T 1ypw_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp SEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECS
T ss_pred CcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccC
Confidence 468999999988653 23344455555555555444445566666663
No 371
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=76.82 E-value=4.5 Score=48.24 Aligned_cols=44 Identities=9% Similarity=0.161 Sum_probs=33.0
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
.+++.+|.|+|||..++..+.+....+ .+.+++|+..--++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g---------~g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY---------PDAVCLFYDSEFGITPA 73 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC---------TTCEEEEEESSCCCCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC---------CCceEEEEeccchhhHH
Confidence 589999999999998887776665432 12389999887776543
No 372
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=76.81 E-value=3.7 Score=45.65 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=19.8
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHh
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQK 1384 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~ 1384 (2158)
.++++.||+|+|||..+. ++...+..
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 689999999999998873 44444443
No 373
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=76.67 E-value=6.3 Score=49.01 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=16.4
Q ss_pred CCcEEE--EccCCCchHHHHHHH
Q 000114 511 ADNILL--CAPTGAGKTNVAVLT 531 (2158)
Q Consensus 511 ~~nvlv--~APTGsGKT~~a~l~ 531 (2158)
...++| +||.|+|||..+...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~ 72 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFT 72 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHH
Confidence 346888 999999999876433
No 374
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=76.66 E-value=6.2 Score=46.84 Aligned_cols=48 Identities=8% Similarity=0.251 Sum_probs=25.7
Q ss_pred cccceeEEEecccccccCC-----CCChHHHHHHHHHHHHhhcCCCceEEEeccC
Q 000114 1461 YVQQVSLFIIDELHLIGGQ-----GGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1461 ~l~~v~llIiDEaH~l~~~-----~g~~~e~~isrl~~i~~~~~~~~riV~lSAT 1510 (2158)
...+.++||+||...+.+. .......++..++.+.... ++.+|++|-.
T Consensus 144 ~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~--~~~vi~vsh~ 196 (296)
T 1cr0_A 144 SGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKST--GVVLVVICHL 196 (296)
T ss_dssp HTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHH--CCEEEEEEEC
T ss_pred HhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHh--CCeEEEEEec
Confidence 3457899999999986421 1123344555566554432 4566666544
No 375
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=76.17 E-value=11 Score=44.75 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLT 531 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~ 531 (2158)
...+++++|+|+|||..+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~L 125 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKL 125 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 356889999999999766443
No 376
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.46 E-value=16 Score=42.78 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.0
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHH
Q 000114 508 LSSADNILLCAPTGAGKTNVAVLTIL 533 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il 533 (2158)
+..++-+++.||+|||||..+...+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34556789999999999987765544
No 377
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=75.40 E-value=4.9 Score=45.91 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=19.3
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQ 534 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~ 534 (2158)
.++.+++.+|+|+|||..+...+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3567899999999999877655443
No 378
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.29 E-value=13 Score=43.77 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=20.0
Q ss_pred hcCCCcEEEEccCCchhHHHHHHHHH
Q 000114 1354 YNTDDNVLVAAPTGSGKTICSEFAIL 1379 (2158)
Q Consensus 1354 ~~~~~nvli~ApTGSGKTl~a~l~il 1379 (2158)
+..++-++|.||+|||||..+...+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34567799999999999988755443
No 379
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.15 E-value=3 Score=56.35 Aligned_cols=47 Identities=21% Similarity=0.411 Sum_probs=27.2
Q ss_pred ceeEEEecccccccCCC----CChHHHHHHHHHHHHhhcCCCceEEEeccC
Q 000114 1464 QVSLFIIDELHLIGGQG----GPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1464 ~v~llIiDEaH~l~~~~----g~~~e~~isrl~~i~~~~~~~~riV~lSAT 1510 (2158)
.-.+|+|||+|.+...+ +..-..+++.+......+....+++.+.||
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 45789999999987532 333344555544333333344456666666
No 380
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=75.13 E-value=8.4 Score=46.05 Aligned_cols=18 Identities=17% Similarity=-0.060 Sum_probs=15.4
Q ss_pred cEEEEccCCchhHHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l 1376 (2158)
+.++.||.|+|||.++..
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 20 SILINGEDLSYPREVSLE 37 (305)
T ss_dssp EEEEECSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999987743
No 381
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=74.28 E-value=9 Score=47.59 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred hcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc----CCCceEEEEEcccHHHHHHHHHHHHHHhcCCC-----CcEEEE
Q 000114 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEALAKERYRDWEIKFGQGL-----GMRVVE 1424 (2158)
Q Consensus 1354 ~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~----~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~-----g~~v~~ 1424 (2158)
+..+.-+.|.+|+|||||..+...++..... . ..+ +++|+.-...+-......+.++++-.. .+.+..
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p-~~~Gg~~~--~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~ 251 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIP-LDIGGGEG--KCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYAR 251 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSC-GGGTCCSS--EEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccC-cccCCCCC--cEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEec
Q ss_pred EcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC----------hHHHHHHHHHHH
Q 000114 1425 LTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP----------VLEVIVSRMRYI 1494 (2158)
Q Consensus 1425 ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~----------~~e~~isrl~~i 1494 (2158)
... .+....+..+......-.++++||+||+-.+....-. .+..++..++.+
T Consensus 252 ~~~------------------~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~l 313 (400)
T 3lda_A 252 AYN------------------ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRL 313 (400)
T ss_dssp CCS------------------HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred cCC------------------hHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHH
Q ss_pred HhhcCCCceEEEec
Q 000114 1495 ASQVENKIRIVALS 1508 (2158)
Q Consensus 1495 ~~~~~~~~riV~lS 1508 (2158)
.+.. ++-+|+.+
T Consensus 314 ake~--gitVIlv~ 325 (400)
T 3lda_A 314 ADQF--GVAVVVTN 325 (400)
T ss_dssp HHHH--CCEEEEEE
T ss_pred HHHc--CCEEEEEE
No 382
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=74.23 E-value=6.7 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=17.3
Q ss_pred cEEEEccCCchhHHHHHHHHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNH 1382 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l 1382 (2158)
.+++.||+|+|||.++. .+.+.+
T Consensus 40 ~~ll~G~~G~GKT~la~-~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR-LLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 47999999999998874 333443
No 383
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=74.07 E-value=1.8 Score=39.49 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=48.2
Q ss_pred cccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccC
Q 000114 1979 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 2036 (2158)
Q Consensus 1979 L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~ 2036 (2158)
+.+.++|++..+++|...| +.|+.++...+.++...+-++++....++.+.++.+
T Consensus 8 f~~~lgI~e~~a~~L~~~G---f~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~ 62 (70)
T 1u9l_A 8 FTKYLDIDEDFATVLVEEG---FSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 62 (70)
T ss_dssp HHHHHTCCHHHHHHHHHTT---CCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHcC---cCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 4566799999999999999 999999999999988888889999988888777643
No 384
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=73.86 E-value=4.8 Score=44.72 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=18.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQL 536 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l 536 (2158)
.+++++||+|+|||..+. ++...+
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 689999999999998764 334444
No 385
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=73.58 E-value=8 Score=49.48 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=26.5
Q ss_pred cceEEeecccccccCCh-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~rg-------~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
..+++|||+|.+...++ ...+..+..++..+........++.+.||
T Consensus 124 p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 124 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECC
T ss_pred CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEec
Confidence 46899999998864332 23344455555444433334445666666
No 386
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=73.55 E-value=4.8 Score=47.22 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchH
Q 000114 1805 SELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEE 1884 (2158)
Q Consensus 1805 ~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~ 1884 (2158)
.+.+..++..|...|+|. + +-..|.+|+.+|.++++|...+++..+....+ ...++.|.|.-+ ..++.+|+.++
T Consensus 17 ~~~l~~A~~~L~~LgAld--~--~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c-~~~~l~iaA~Ls-~~~~f~~p~~~ 90 (270)
T 3i4u_A 17 METLITAMEQLYTLGALD--D--EGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGC-SEEMLTIVSMLS-VQNVFYRPKDK 90 (270)
T ss_dssp HHHHHHHHHHHHHHTSBC--T--TSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTC-HHHHHHHHHHHT-SSCCBCCCGGG
T ss_pred HHHHHHHHHHHHHcCCcC--C--CCCccHHHHHHHhCCCCHHHHHHHHHhhhcCC-HHHHHHHHHHHC-CCccccCCchh
Confidence 367899999999999993 3 33577889999999999999999987655444 466666655433 35666676655
Q ss_pred H
Q 000114 1885 E 1885 (2158)
Q Consensus 1885 ~ 1885 (2158)
.
T Consensus 91 ~ 91 (270)
T 3i4u_A 91 Q 91 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 387
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=72.43 E-value=5.7 Score=48.47 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=29.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
+.-++|.+|+|+|||..++..+...... +.+++|+..-.++-..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~-----------gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM-----------GGVAAFIDAEHALDPV 104 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT-----------TCCEEEEESSCCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-----------CCeEEEEecccccchH
Confidence 4568999999999998765544443322 2268898776555444
No 388
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=72.34 E-value=3.1 Score=47.81 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=18.9
Q ss_pred cCCCcEEEEccCCchhHHHHHHHH
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAI 1378 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~i 1378 (2158)
..++.+.+.+|+|||||..+...+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 456779999999999998775433
No 389
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=71.56 E-value=17 Score=43.16 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.1
Q ss_pred CCcEEEEccCCchhHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l 1376 (2158)
+..+++.+|+|+|||..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45788999999999977643
No 390
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=71.08 E-value=2.9 Score=53.85 Aligned_cols=36 Identities=17% Similarity=0.029 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a 1374 (2158)
+..+++.+.+-+......+.+++|+||||||||...
T Consensus 242 ~G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 242 KGTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp TTSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 445777777777777777888999999999999765
No 391
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=70.88 E-value=8.3 Score=49.64 Aligned_cols=142 Identities=9% Similarity=0.091 Sum_probs=70.2
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE----EEcCCcch
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV----ELTGETAM 1431 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~----~ltG~~~~ 1431 (2158)
.++-++|+|++|+|||..++-.+.....+ .+. +++|+.--- -..|+..++..... |+... ...|....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~--~vl~~s~E~-s~~~l~~r~~~~~~---~~~~~~~~~~~~g~l~~ 312 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGK--KVGLAMLEE-SVEETAEDLIGLHN---RVRLRQSDSLKREIIEN 312 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCC--CEEEEESSS-CHHHHHHHHHHHHT---TSCCTTCHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh--cCC--cEEEEeccC-CHHHHHHHHHHHHc---CCChhhccccccCCCCH
Confidence 46679999999999998875554443322 123 677775421 13344444322221 11110 00011000
Q ss_pred h-h-----hcccCCcEEEe------CHHHHHHHHhhhhccccccceeEEEecccccccCCC-C-C---hHHHHHHHHHHH
Q 000114 1432 D-L-----KLLEKGQIIIS------TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-G-P---VLEVIVSRMRYI 1494 (2158)
Q Consensus 1432 ~-~-----~~l~~~~IIV~------TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~-g-~---~~e~~isrl~~i 1494 (2158)
+ . ..+...++.+. |++.+...+++.... ..+++||||=++.+.... + . .+..++..++.+
T Consensus 313 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~---~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~l 389 (503)
T 1q57_A 313 GKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSG---LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGF 389 (503)
T ss_dssp SHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHT---TCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHh---cCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 0 0 01123445443 334444444433222 368999999999775321 1 1 223455666666
Q ss_pred HhhcCCCceEEEeccC
Q 000114 1495 ASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2158)
+..+ ++.++++|-.
T Consensus 390 ak~~--~i~vi~~~q~ 403 (503)
T 1q57_A 390 AKST--GVVLVVICHL 403 (503)
T ss_dssp HHHH--TCEEEEEEEC
T ss_pred HHHH--CCeEEEEEcC
Confidence 5543 5677776543
No 392
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=70.78 E-value=1.4 Score=44.39 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=51.2
Q ss_pred ccccCC--CCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccC
Q 000114 1978 MLLQLP--HFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 2036 (2158)
Q Consensus 1978 ~L~QLP--~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~ 2036 (2158)
++-.|| |+++..+++|.+.| +.|+.++...++++...+.++++....+|...++.+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG---~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAG---FHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTC---CSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred cHHHHHhcCCCHHHHHHHHHcC---cCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 566777 99999999999999 999999999999999888899999999999999876
No 393
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.39 E-value=5.4 Score=57.95 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=32.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
..++++++|+|+|||..++..+...+..+ .+++|+.-....-.
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G-----------~~vlYI~te~~~~~ 76 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREG-----------KTCAFIDAEHALDP 76 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT-----------CCEEEECTTSCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCC-----------CceEEEEecCccHH
Confidence 56899999999999998887777666542 26899876654433
No 394
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=69.58 E-value=3.3 Score=53.34 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHH
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a 528 (2158)
..+++.+..-+...+..+.+++++||||||||...
T Consensus 243 G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 243 GTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp TSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34677777777777788888999999999999653
No 395
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=68.86 E-value=7 Score=52.79 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=30.2
Q ss_pred cceEEeecccccccC----ChhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDN----RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~----rg~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
-.+|+|||+|.+... .+..-..+++.++..+......-+++.+-||
T Consensus 298 PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp SEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred CeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 368999999988642 3344455666666555555555567777677
No 396
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=68.49 E-value=4.9 Score=54.93 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCchhHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~ 1375 (2158)
.+.++++++|+|||||.++-
T Consensus 237 ~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 46689999999999998773
No 397
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=67.55 E-value=10 Score=48.56 Aligned_cols=19 Identities=37% Similarity=0.587 Sum_probs=16.0
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
...+++.+|+|+|||+.+-
T Consensus 64 p~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CSEEEEECSSSSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3459999999999998873
No 398
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=67.29 E-value=5.3 Score=49.98 Aligned_cols=40 Identities=30% Similarity=0.435 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHhc-CCCcEEEEccCCchhHHHHHHHHHHHH
Q 000114 1342 FNPIQTQVFTVLYN-TDDNVLVAAPTGSGKTICSEFAILRNH 1382 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~-~~~nvli~ApTGSGKTl~a~l~il~~l 1382 (2158)
+.+-+..+|..++. .+..++|++|||||||... -+++..+
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l 191 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQEL 191 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhc
Confidence 34556667776654 3456899999999999765 3344444
No 399
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=66.74 E-value=5 Score=48.41 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=48.5
Q ss_pred ccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHcc
Q 000114 1978 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 2035 (2158)
Q Consensus 1978 ~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~ 2035 (2158)
+|..|||+++..+++|+++| +.|+.+++..++++...+.++++....++...+..
T Consensus 4 ~~~~l~gi~~~~~~kL~~~g---i~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAG---YIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHT---CCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHHHHcC---CCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHH
Confidence 68899999999999999999 99999999999999888888999888887776654
No 400
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=66.37 E-value=11 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCchHHHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~i 532 (2158)
..|++++||+|+|||.++....
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHH
Confidence 4579999999999998765433
No 401
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=65.70 E-value=22 Score=42.32 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l 530 (2158)
..+++++|+|+|||..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 4578999999999976543
No 402
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=65.06 E-value=13 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=17.8
Q ss_pred CCcEEEEccCCchhHHHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAI 1378 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~i 1378 (2158)
..|+++.||+|+|||.++....
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHH
Confidence 4579999999999998874433
No 403
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=64.18 E-value=9.1 Score=45.83 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=19.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLA 537 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~ 537 (2158)
..++++.||||+|||..+.. +...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~a-ia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA-MAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 46899999999999987653 334433
No 404
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=63.94 E-value=7.2 Score=56.69 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=56.8
Q ss_pred HHHHHHhc-----CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000114 1348 QVFTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (2158)
Q Consensus 1348 q~~~~l~~-----~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v 1422 (2158)
..+..++. .+.-++|+||+|+|||..++-.+...... ++ +++|+.---++-... . +.++ +..
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~---G~--~vlyis~E~s~~~~~---a-~~lG----vd~ 435 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK--TCAFIDAEHALDPIY---A-RKLG----VDI 435 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC--CEEEECTTSCCCHHH---H-HHTT----CCG
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC--CeEEEEccCchHHHH---H-HHcC----CCH
Confidence 34666665 46779999999999999886666655433 44 788886544332221 1 2332 110
Q ss_pred EEEcCCcchhhhcccCCcEEEe---CHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1423 VELTGETAMDLKLLEKGQIIIS---TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1423 ~~ltG~~~~~~~~l~~~~IIV~---TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+ ++.+. +.+.+....+.... -..+++||||.+..+.
T Consensus 436 ---------~-------~L~i~~~~~~e~~l~~l~~lv~---~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 436 ---------D-------NLLCSQPDTGEQALEICDALAR---SGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ---------G-------GCEEECCSSHHHHHHHHHHHHH---HTCCSEEEESCSTTCC
T ss_pred ---------H-------HeEEcCCCCHHHHHHHHHHHHH---hcCCCEEEECCHHHhh
Confidence 0 11122 34554444443221 1368899999999875
No 405
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=63.49 E-value=5.6 Score=50.21 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=31.1
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
+.|++|.||||||||... -.++..+.. .+. .++++=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~--~g~--~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL--RGD--RMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH--TTC--EEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH--CCC--cEEEEeCCCchhH
Confidence 467999999999999975 334433333 234 7899999988854
No 406
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=63.25 E-value=6.7 Score=47.02 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=20.2
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~ 1383 (2158)
..++++.||+|+|||..+. ++...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5789999999999998874 4444454
No 407
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=62.08 E-value=17 Score=46.65 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=32.1
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
..++-++|.|++|+|||..++-.+.+..... +.+++|+.---. ..|+..++
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~----------g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAM----------GKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTS----------CCCEEEEESSSC-HHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhc----------CCcEEEEeccCC-HHHHHHHH
Confidence 3456689999999999988766665554321 235787764322 34554444
No 408
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=61.93 E-value=4.7 Score=37.58 Aligned_cols=55 Identities=11% Similarity=-0.062 Sum_probs=44.3
Q ss_pred CCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHc
Q 000114 1976 DSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 2034 (2158)
Q Consensus 1976 ~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~ 2034 (2158)
.+.|..+||+++..++++.+. +.++.++...+.++...+-++++.....+..+++
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~----fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY----MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH----HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHHHhcCCCCCHHHHHHHHHH----cCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 456889999999999987664 4578899998888777776788888888887764
No 409
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=59.85 E-value=5.2 Score=46.63 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=18.9
Q ss_pred HhcCCCcEEEEccCCchhHHHHH
Q 000114 1353 LYNTDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1353 l~~~~~nvli~ApTGSGKTl~a~ 1375 (2158)
+...+.++++.||+|+|||.++.
T Consensus 25 ~~~~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 25 LAPLDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp HTTSCSCEEEECCTTSCHHHHHH
T ss_pred HhCCCCCEEEECCCCCcHHHHHH
Confidence 34567789999999999998773
No 410
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=59.80 E-value=12 Score=45.66 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=48.9
Q ss_pred CccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHcc
Q 000114 1977 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 2035 (2158)
Q Consensus 1977 s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~ 2035 (2158)
.+|-+|||+++..+++|.++| +.|+.+++..++.+...+.++++....++.+.+..
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag---~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~ 90 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAG---YDTLEAIAVASPIELKEVAGISEGTALKIIQAARK 90 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTT---CCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccHHHcCCCCHHHHHHHHHcC---CCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhh
Confidence 368899999999999999999 99999999999999988889988877777666543
No 411
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=59.73 E-value=5.1 Score=46.69 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.1
Q ss_pred HHcCCCcEEEEccCCCchHHHH
Q 000114 507 ALSSADNILLCAPTGAGKTNVA 528 (2158)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a 528 (2158)
+...+.+++++||+|+|||.++
T Consensus 25 ~~~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 25 LAPLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp HTTSCSCEEEECCTTSCHHHHH
T ss_pred HhCCCCCEEEECCCCCcHHHHH
Confidence 3455678999999999999766
No 412
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=57.88 E-value=47 Score=39.64 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=50.0
Q ss_pred cCCceEEEecCccccccC-----CC-ccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC--CCCceEEEEEecCC
Q 000114 1657 AGKIKVCVMSSSMCWGVP-----LT-AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL--LDNSGKCVILCHAP 1728 (2158)
Q Consensus 1657 ~g~i~VLVaT~~la~Gvd-----lp-~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g--~d~~G~~iil~~~~ 1728 (2158)
+....+.+.|+...-|+| +. +..||+ ||+.-+ +-.+.+|.+-||.|.| ..+.-.++.++...
T Consensus 168 ~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~-----~DsdwN-----p~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 168 DFSCTVHLFSSEGINFTKYPIKSKARFDMLIC-----LDTTVD-----TSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEE-----CSTTCC-----TTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred cCCceEEEEECCCCCCcCcccccCCCCCEEEE-----ECCCCC-----CCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 456666666776666786 33 555555 554432 2344677677777753 24566788888877
Q ss_pred hHHHHHHHhhCCCccccchhhHHHHHHHHHHh
Q 000114 1729 RKEYYKKFLYDAFPVESHLHHFLHDNFNAEIV 1760 (2158)
Q Consensus 1729 ~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~ 1760 (2158)
..+...-++.+. .++.....+...+++-++
T Consensus 238 TiEh~~l~~~~~--~~~~~~~~l~k~i~a~v~ 267 (328)
T 3hgt_A 238 SIDHCRLFFGKK--FDKNSREYLENVTAAMVI 267 (328)
T ss_dssp SHHHHHHHHHHH--TCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHccCC--CCcchHHHHHHHHHHHHH
Confidence 666555444332 233444566666666444
No 413
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=57.53 E-value=19 Score=33.06 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=45.7
Q ss_pred CccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccC
Q 000114 1977 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 2036 (2158)
Q Consensus 1977 s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~ 2036 (2158)
.|+-+| .++.....-|++.| |.|+.||+..+.++..++-++...-+++|.+.+..+
T Consensus 9 ~~Ie~L-~LS~Ra~NcLkrag---I~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 9 MTIEEL-DLSVRSYNCLKRAG---INTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp CBGGGS-CCBHHHHHHHHHTT---CCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CcHHHh-CCCHHHHHHHHHcC---CCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 345555 46666666678899 999999999999988777789999999999888865
No 414
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=57.33 E-value=9.8 Score=41.09 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
..+++++||+|+|||..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3579999999999998764
No 415
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=56.70 E-value=9.2 Score=48.20 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=30.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
+.|++|.||||||||... ..++..+... +..++++=|--++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~----------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLR----------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHT----------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHC----------CCcEEEEeCCCchhH
Confidence 357999999999999875 3344443332 236888889887753
No 416
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=55.73 E-value=9.1 Score=46.78 Aligned_cols=29 Identities=38% Similarity=0.439 Sum_probs=20.5
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHh
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQK 1384 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~ 1384 (2158)
..+..++|+||||||||... -+++..+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL-~~l~g~~~~ 149 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL-AAMLDYLNN 149 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH-HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHhcccC
Confidence 34557999999999999765 334444443
No 417
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=55.56 E-value=11 Score=40.83 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=18.9
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNH 1382 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l 1382 (2158)
..++++.||+|+|||.++. .+.+.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~-~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE-GLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH-HHHHHH
T ss_pred CCceEEECCCCCCHHHHHH-HHHHHH
Confidence 4679999999999998873 334443
No 418
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=55.09 E-value=27 Score=37.97 Aligned_cols=61 Identities=8% Similarity=0.027 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHcCCCc-EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 497 NRVQSRVYKSALSSADN-ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 497 ~~iQ~~~i~~~l~~~~n-vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
++.|+.++..++.+.+. .+|.++-|++||...+..++..... .+.+|.+++|+..-..+..
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~----------~Gr~V~vLAp~~~s~~~l~ 97 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE----------QGREVQIIAADRRSQMNMK 97 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH----------TTCCEEEECSTTHHHHHHS
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh----------cCeEEEEEcCchHHHHHHH
Confidence 46799999988877654 4788999999998755444444333 2457999999987655543
No 419
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=54.92 E-value=13 Score=35.45 Aligned_cols=54 Identities=6% Similarity=0.006 Sum_probs=44.7
Q ss_pred ccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHcc
Q 000114 1978 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 2035 (2158)
Q Consensus 1978 ~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~ 2035 (2158)
.|..+||+|+..++++.+. +.++.+++..+.++...+-++++.....+..+++.
T Consensus 20 ~L~~IpgIG~~~A~~Ll~~----fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 20 CLTTVKSVNKTDSQTLLTT----FGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHTTSSSCCHHHHHHHHHH----TCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHcCCCCCHHHHHHHHHH----CCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3678999999999987653 45789999999888877777999988899888864
No 420
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=54.85 E-value=6.7 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=18.7
Q ss_pred hcCCCcEEEEccCCchhHHHHH
Q 000114 1354 YNTDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1354 ~~~~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++.++++.||||+|||.++.
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHH
T ss_pred hCCCCcEEEECCCCchHHHHHH
Confidence 3567789999999999998873
No 421
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=54.60 E-value=7.6 Score=46.11 Aligned_cols=19 Identities=53% Similarity=0.847 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
..+++++||+|+|||.++-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998764
No 422
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=54.58 E-value=6.5 Score=47.03 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=18.2
Q ss_pred HcCCCcEEEEccCCCchHHHHH
Q 000114 508 LSSADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~ 529 (2158)
...+.+++++||||+|||.++-
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHH
T ss_pred hCCCCcEEEECCCCchHHHHHH
Confidence 3456789999999999998763
No 423
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=54.20 E-value=5.8 Score=47.81 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=14.6
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
.++|+||||||||.++.
T Consensus 42 lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 424
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=54.13 E-value=6 Score=47.11 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=14.0
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
-++|+||||||||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36889999999997653
No 425
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=53.87 E-value=10 Score=47.49 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHH
Q 000114 496 LNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVA 528 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a 528 (2158)
+.+-+..++..++.. ++.++|++|||||||...
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 355666777766543 346899999999999653
No 426
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=53.83 E-value=9.4 Score=47.36 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=28.9
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ra 1401 (2158)
.+.|++|.||||||||...-.-+.+.. . .+. +++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~--~~~--~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-M--QGS--RVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-T--TTC--CEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-H--CCC--EEEEEeCCcC
Confidence 466899999999999987655444333 2 234 7788888754
No 427
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=53.61 E-value=8.4 Score=47.28 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=19.8
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHH
Q 000114 504 YKSALSSADNILLCAPTGAGKTNVA 528 (2158)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a 528 (2158)
+...+..+++++++||||||||...
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHH
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHH
Confidence 4445667788999999999999643
No 428
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=53.34 E-value=13 Score=35.60 Aligned_cols=52 Identities=6% Similarity=0.010 Sum_probs=43.0
Q ss_pred cccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHc
Q 000114 1979 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 2034 (2158)
Q Consensus 1979 L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~ 2034 (2158)
|..+||+|+..++++.+. +.++.+++..+.++...+-++++.....+..+++
T Consensus 34 L~~IpgIG~~~A~~Ll~~----fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTT----FGSLEQLIAASREDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HTTSTTCCHHHHHHHHHH----HSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHH----CCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHh
Confidence 668999999999987653 5578999999888887777788888888888875
No 429
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=53.32 E-value=6.2 Score=47.01 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=14.1
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
-++|+||||||||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 36889999999997653
No 430
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=53.00 E-value=16 Score=42.47 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=32.6
Q ss_pred HHHHhcCCCCCCHHHHHH-HHHHhcCC---C-cEEEEccCCchhHHHHHHHHH
Q 000114 1332 YEALYQGFKHFNPIQTQV-FTVLYNTD---D-NVLVAAPTGSGKTICSEFAIL 1379 (2158)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~-~~~l~~~~---~-nvli~ApTGSGKTl~a~l~il 1379 (2158)
+-.++. +...+|++-.. +..++++. . .+++.||.|+|||..+. ++.
T Consensus 75 i~~~l~-~qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~-ala 125 (267)
T 1u0j_A 75 IYKILE-LNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE-AIA 125 (267)
T ss_dssp HHHHHH-HTTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH-HHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH-HHH
Confidence 444555 66788988544 66677654 3 49999999999998884 444
No 431
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=52.81 E-value=15 Score=43.43 Aligned_cols=19 Identities=42% Similarity=0.662 Sum_probs=16.8
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++.
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999998874
No 432
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=51.94 E-value=1.9e+02 Score=29.51 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=55.0
Q ss_pred ccCCceEEEEEEeccccccCCCeEEEEEEEEEcCCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccce
Q 000114 2034 NRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKS 2113 (2158)
Q Consensus 2034 ~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~ 2113 (2158)
...|.+.+ ++.....+.+|+.++++|+++-. +. .-++-|. -.| ++ .|+++.-..++|....
T Consensus 14 ~~~pDL~V--~is~P~~v~~G~~~ti~vtV~N~--G~-----~~a~~~~----V~l--yv----ng~~v~t~~v~La~G~ 74 (127)
T 3idu_A 14 FEFPDLTV--EIKGPDVVGVNKLAEYEVHVKNL--GG-----IGVPSTK----VRV--YI----NGTLYKNWTVSLGPKE 74 (127)
T ss_dssp CSSCCEEE--EEESCSEECTTCCEEEEEEEEEC--SS-----SCEEEEE----EEE--EE----TTEEEEEEEEEECTTC
T ss_pred ccCCCeEE--EecCCCcccCCCEEEEEEEEEEC--CC-----CccCCcE----EEE--EE----CCEEEeeEEeccCCCC
Confidence 55788877 45556678999999999999873 21 1111111 112 22 5677776666776544
Q ss_pred EEEEEEEe-cCCCCceEEEEEEEeCCcc
Q 000114 2114 RVKLDFAA-PAEAGKKTYTLYFMCDSYM 2140 (2158)
Q Consensus 2114 ~~~l~f~~-P~~~G~~~~~l~~~sDsY~ 2140 (2158)
+..+.|.. |..+|.|.+++.+-++.-+
T Consensus 75 s~tv~f~~~~~~~G~~~v~AvVD~~n~I 102 (127)
T 3idu_A 75 EKVLTFNWTPTQEGMYRINATVDEENTV 102 (127)
T ss_dssp EEEEEEEECCSSCEEEEEEEEESTTCCS
T ss_pred eEEEEEEEEcCCCcEEEEEEEEcCCCcE
Confidence 44444443 4468989888877777655
No 433
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=51.69 E-value=7.2 Score=47.84 Aligned_cols=21 Identities=52% Similarity=0.695 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l 530 (2158)
...+++++||+|+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 345799999999999987643
No 434
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=51.48 E-value=11 Score=46.55 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=24.0
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEE
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~I 1396 (2158)
..+..++|+||||||||...- .++..+.. ...+ +++++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~-~l~~~~~~-~~~g--~I~~~ 171 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA-SMIDYINQ-TKSY--HIITI 171 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH-HHHHHHHH-HSCC--EEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHH-HHHhhcCc-CCCc--EEEEe
Confidence 456679999999999997653 33444433 1134 55544
No 435
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=51.45 E-value=7.4 Score=47.75 Aligned_cols=21 Identities=48% Similarity=0.751 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCchhHHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l 1376 (2158)
...++++.||+|+|||.++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356899999999999988733
No 436
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=50.51 E-value=7.1 Score=45.57 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=17.0
Q ss_pred HcCCCcEEEEccCCCchHHHH
Q 000114 508 LSSADNILLCAPTGAGKTNVA 528 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a 528 (2158)
+..++.++++||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 455667899999999999764
No 437
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=50.51 E-value=9.9 Score=46.62 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=19.5
Q ss_pred HHHhcCCCcEEEEccCCchhHHHH
Q 000114 1351 TVLYNTDDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1351 ~~l~~~~~nvli~ApTGSGKTl~a 1374 (2158)
......+.+++|+||||||||...
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHH
T ss_pred HHHHhcCCEEEEECCCCCCHHHHH
Confidence 344567888999999999999765
No 438
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=50.00 E-value=57 Score=38.54 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=14.2
Q ss_pred CcEEEEccCCchhHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~ 1375 (2158)
..+.+++++|+|||..+.
T Consensus 99 ~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp EEEEEECCTTTTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999997653
No 439
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=49.89 E-value=11 Score=41.97 Aligned_cols=35 Identities=9% Similarity=0.266 Sum_probs=23.9
Q ss_pred HHHHHHHhcCC---CcEEEEccCCchhHHHHHHHHHHHH
Q 000114 1347 TQVFTVLYNTD---DNVLVAAPTGSGKTICSEFAILRNH 1382 (2158)
Q Consensus 1347 ~q~~~~l~~~~---~nvli~ApTGSGKTl~a~l~il~~l 1382 (2158)
..++..++.+- .++++.+|.|+|||..+ .++.+.+
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 34455555542 35999999999999877 5555443
No 440
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=49.71 E-value=16 Score=33.43 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=43.3
Q ss_pred ccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHcc
Q 000114 1978 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 2035 (2158)
Q Consensus 1978 ~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~ 2035 (2158)
.|.++||++...++++.+. +.++.+++..+.++...+-++++.....+..+++.
T Consensus 15 ~L~~i~giG~~~a~~Ll~~----fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 15 IVEGLPHVSATLARRLLKH----FGSVERVFTASVAELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHH----HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHcCCCCCCHHHHHHHHHH----cCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 3678999999999888763 56788999888887766667888888888887754
No 441
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=49.65 E-value=28 Score=32.98 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=46.1
Q ss_pred ccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccC
Q 000114 1978 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 2036 (2158)
Q Consensus 1978 ~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~ 2036 (2158)
|+-+| .++.....-|++.| |+|+.||+..+.++..++-++...-+++|.+.+..+
T Consensus 13 ~I~~L-~LSvRa~NcLkrag---I~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 13 PVDDL-ELTVRSANCLXAEA---IHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASR 67 (86)
T ss_dssp BGGGG-CCCHHHHHHHHHTT---CCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTT
T ss_pred cHHHh-CCCHHHHHHHHHcC---CCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHc
Confidence 44555 56666667788999 999999999999988787789999999999998876
No 442
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=49.51 E-value=16 Score=46.80 Aligned_cols=42 Identities=33% Similarity=0.370 Sum_probs=26.6
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEccc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ 1399 (2158)
..+++|.++||||||.+.-..++..+....+ +..+.+.+=|.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p-~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQP-EDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCT-TTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCC-ceEEEEEECCc
Confidence 4569999999999998875555544444222 33344444443
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=49.39 E-value=6.8 Score=46.61 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=13.9
Q ss_pred cEEEEccCCchhHHHH
Q 000114 1359 NVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a 1374 (2158)
-++|+||||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3788999999999776
No 444
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=49.27 E-value=6.7 Score=42.75 Aligned_cols=21 Identities=43% Similarity=0.466 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLT 531 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~ 531 (2158)
..+++++||+|||||.++-..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357999999999999877543
No 445
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=49.18 E-value=7.9 Score=46.69 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=15.0
Q ss_pred CcEEEEccCCchhHHHH
Q 000114 1358 DNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a 1374 (2158)
..++|+||||||||.++
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36899999999999877
No 446
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=49.12 E-value=6.8 Score=41.91 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=15.1
Q ss_pred cEEEEccCCCchHHHHHH
Q 000114 513 NILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l 530 (2158)
.++++||+|||||.++-.
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987643
No 447
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=49.00 E-value=7.9 Score=45.17 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=17.0
Q ss_pred cCCCcEEEEccCCchhHHHH
Q 000114 1355 NTDDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a 1374 (2158)
..++.++|++|||||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 45667999999999999775
No 448
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=48.91 E-value=7 Score=46.59 Aligned_cols=16 Identities=44% Similarity=0.509 Sum_probs=14.0
Q ss_pred cEEEEccCCchhHHHH
Q 000114 1359 NVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a 1374 (2158)
-++|+||||||||.++
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4788999999999776
No 449
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=48.83 E-value=8 Score=44.85 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=14.4
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
.++++||||||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999998763
No 450
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=48.68 E-value=8.6 Score=42.70 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=14.3
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
-+++++|||+|||..+.
T Consensus 36 ~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 36 GVLITGDSGVGKSETAL 52 (205)
T ss_dssp EEEEECCCTTTTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999986653
No 451
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=48.50 E-value=13 Score=46.15 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=28.5
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
.+.|++|+||||||||...-..+.+.... +.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-----------~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-----------GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-----------TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-----------CCEEEEEeCCcC
Confidence 45689999999999998765544444321 236777877655
No 452
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=48.48 E-value=8.5 Score=46.56 Aligned_cols=24 Identities=33% Similarity=0.700 Sum_probs=19.0
Q ss_pred HHHHHcCCCcEEEEccCCCchHHH
Q 000114 504 YKSALSSADNILLCAPTGAGKTNV 527 (2158)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~ 527 (2158)
+...+..++++++++|||||||..
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHH
T ss_pred hhhhccCCCEEEEECCCCCCHHHH
Confidence 344456678899999999999964
No 453
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=48.29 E-value=8.6 Score=46.53 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=19.2
Q ss_pred HHHHhcCCCcEEEEccCCchhHHHH
Q 000114 1350 FTVLYNTDDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1350 ~~~l~~~~~nvli~ApTGSGKTl~a 1374 (2158)
+......+++++|++|||||||...
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHH
T ss_pred hhhhccCCCEEEEECCCCCCHHHHH
Confidence 3334456778999999999999754
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=48.01 E-value=8.4 Score=46.26 Aligned_cols=17 Identities=53% Similarity=0.835 Sum_probs=14.6
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
.++|+||||||||.++.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 455
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=47.86 E-value=7.9 Score=42.17 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=16.9
Q ss_pred CCcEEEEccCCchhHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l 1376 (2158)
..+++++||+|||||.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45799999999999988844
No 456
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=47.67 E-value=9.9 Score=42.12 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l 530 (2158)
....++++||+|||||.++-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 456799999999999987643
No 457
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=47.65 E-value=12 Score=37.54 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=44.8
Q ss_pred CCccccC--CCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcCc-hhHHHHHHHHhcC
Q 000114 1142 TPLRQFN--GIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQF 1196 (2158)
Q Consensus 1142 ~~l~q~~--~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~ 1196 (2158)
.|+-.++ |+++..+++|..+|| +++++...++.+|.++-+.. .-..+|...++++
T Consensus 23 ~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 23 QPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4666777 999999999999998 78888888999999998753 4456777777765
No 458
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=47.60 E-value=15 Score=41.18 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=27.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
.++++|-|||||..++-.+.+....+ .+++++.|.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g-----------~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAK-----------QHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT-----------CCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC-----------CEEEEEEeccC
Confidence 46899999999988877766665443 47999999864
No 459
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=47.53 E-value=13 Score=35.79 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=32.4
Q ss_pred CCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHH
Q 000114 1976 DSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDE 2014 (2158)
Q Consensus 1976 ~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~ 2014 (2158)
-+.|..||.+++...+.|.+.| |.|+.+|..+...+
T Consensus 3 m~~L~dLPNig~~~e~~L~~~G---I~t~~~Lr~~Ga~~ 38 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIKAG---IKTPVELKDVGSKE 38 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHHTT---CCSHHHHHHHCHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHH
Confidence 3679999999999999999999 99999999887664
No 460
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=46.97 E-value=10 Score=41.22 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2158)
.-++++||+|||||..+-
T Consensus 6 ~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 458899999999997653
No 461
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=46.91 E-value=7.7 Score=41.47 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=15.4
Q ss_pred cEEEEccCCchhHHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l 1376 (2158)
.++++||+|||||.++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999988753
No 462
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=46.86 E-value=7.5 Score=45.10 Aligned_cols=17 Identities=41% Similarity=0.329 Sum_probs=14.7
Q ss_pred cEEEEccCCchhHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~ 1375 (2158)
.++|+||||||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999998773
No 463
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=46.60 E-value=10 Score=42.50 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCchhHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~ 1375 (2158)
.+.-++++||+|||||..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45568899999999998764
No 464
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=46.51 E-value=14 Score=47.22 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=50.1
Q ss_pred CCccccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcCchhHHHHHHHHhcCCcceE
Q 000114 1142 TPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLIL 1201 (2158)
Q Consensus 1142 ~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~ 1201 (2158)
.|+..|+|||+...++|.+.|| ++.++..++...|...++ +..|..+++.++-...-.+
T Consensus 315 LPV~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~fG-~~~g~~L~~~a~GiD~~pV 374 (504)
T 3gqc_A 315 QLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFG-PKTGQMLYRFCRGLDDRPV 374 (504)
T ss_dssp SBGGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHC-HHHHHHHHHHTTTCCCCCC
T ss_pred CChhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhhC-hhHHHHHHHHhcCCCcccc
Confidence 7999999999999999999998 788899899999988887 5678889888776654433
No 465
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=46.40 E-value=11 Score=41.07 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=16.0
Q ss_pred CCcEEEEccCCchhHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l 1376 (2158)
+.-++++||+|||||...-.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45588999999999987633
No 466
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=46.31 E-value=9.4 Score=48.87 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=19.0
Q ss_pred HHHHcCCCcEEEEccCCCchHHHH
Q 000114 505 KSALSSADNILLCAPTGAGKTNVA 528 (2158)
Q Consensus 505 ~~~l~~~~nvlv~APTGsGKT~~a 528 (2158)
-.++.++.+++++||+|+|||..+
T Consensus 35 ~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 35 LLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHhcCCeeEeecCchHHHHHHH
Confidence 334455678999999999999765
No 467
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=46.29 E-value=10 Score=45.72 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=19.1
Q ss_pred HHHHcCCCcEEEEccCCCchHHHHH
Q 000114 505 KSALSSADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 505 ~~~l~~~~nvlv~APTGsGKT~~a~ 529 (2158)
..++..+.++++.||+|+|||..+-
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHHH
Confidence 3344456789999999999997664
No 468
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=46.04 E-value=9.7 Score=46.54 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=16.6
Q ss_pred HcCCCcEEEEccCCCchHHHH
Q 000114 508 LSSADNILLCAPTGAGKTNVA 528 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a 528 (2158)
...++.++|+||||||||...
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHH
Confidence 344557999999999999654
No 469
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=45.86 E-value=9.7 Score=42.59 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
+.-++++||+|||||.++-
T Consensus 8 g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHH
Confidence 4557899999999997653
No 470
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=45.86 E-value=11 Score=41.75 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCchhHHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l 1376 (2158)
...+++++||+|||||.++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 456799999999999988743
No 471
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=45.52 E-value=29 Score=32.70 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=41.0
Q ss_pred cccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcCchh-----HHHHHHHHhcCCc
Q 000114 1145 RQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFPKM-----GRTLHKFVHQFPK 1198 (2158)
Q Consensus 1145 ~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~P~ 1198 (2158)
.-.|++++..+++|.++|| ++.++...++.|+.++.+.+-. .+.+.+.+.-+|.
T Consensus 7 ~~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~~~~ 66 (83)
T 2kz3_A 7 GLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPV 66 (83)
T ss_dssp TSSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCSSCC
T ss_pred ccCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCcC
Confidence 3458999999999999998 7899999999999999876422 2344455555554
No 472
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=45.25 E-value=11 Score=45.65 Aligned_cols=17 Identities=35% Similarity=0.726 Sum_probs=14.6
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
.++|+||||||||.++.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999998763
No 473
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=45.03 E-value=16 Score=40.88 Aligned_cols=23 Identities=17% Similarity=0.667 Sum_probs=17.9
Q ss_pred cEEEEccCCCchHHHHHHHHHHHH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQL 536 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l 536 (2158)
++++.+|.|+|||..+ +++++.+
T Consensus 60 ~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5999999999999876 4455544
No 474
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=44.88 E-value=17 Score=37.14 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=34.9
Q ss_pred ccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHc
Q 000114 1978 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 2034 (2158)
Q Consensus 1978 ~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~ 2034 (2158)
.|.|||||++..++++.++| +.+++.||++. -++++.+.+.+.+...
T Consensus 64 eL~~LpGiGp~~A~~II~~G--pF~svedL~~V--------~GIg~k~~e~l~~~~~ 110 (134)
T 1s5l_U 64 AFIQYRGLYPTLAKLIVKNA--PYESVEDVLNI--------PGLTERQKQILRENLE 110 (134)
T ss_dssp GGGGSTTCTHHHHHHHHHTC--CCSSGGGGGGC--------TTCCHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHcC--CCCCHHHHHhC--------CCCCHHHHHHHHHhhc
Confidence 48999999999999988877 58888888753 3466666555555544
No 475
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=44.20 E-value=9 Score=42.19 Aligned_cols=16 Identities=31% Similarity=0.771 Sum_probs=13.6
Q ss_pred cEEEEccCCCchHHHH
Q 000114 513 NILLCAPTGAGKTNVA 528 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a 528 (2158)
-++++||+|+|||.+.
T Consensus 3 pIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999653
No 476
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=44.11 E-value=12 Score=45.13 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCchhHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~ 1375 (2158)
.+.++++.||+|+|||..+.
T Consensus 45 ~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHHH
Confidence 46689999999999998773
No 477
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=44.08 E-value=9 Score=41.34 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2158)
..++++||.|||||.++-
T Consensus 4 ~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358999999999998763
No 478
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=43.98 E-value=24 Score=32.87 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=43.8
Q ss_pred ccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccC
Q 000114 1978 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 2036 (2158)
Q Consensus 1978 ~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~ 2036 (2158)
++-+| .++.....-|++.| |+|+.||+.++.++..++-++...-+++|.+.+..+
T Consensus 17 ~Ie~L-~LS~Ra~NcLk~ag---I~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e~ 71 (79)
T 3gfk_B 17 TIEEL-DLSVRSYNCLKRAG---INTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 71 (79)
T ss_dssp BGGGS-CCBHHHHHHHHHTT---CCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHHT
T ss_pred cHHHh-CCCHHHHHHHHHhC---CCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHHc
Confidence 34455 56666667788999 999999999999887777779888888888888754
No 479
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=43.91 E-value=11 Score=41.79 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.0
Q ss_pred CCcEEEEccCCchhHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a 1374 (2158)
+.-++|.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345899999999999766
No 480
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=43.48 E-value=11 Score=45.32 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=14.5
Q ss_pred cEEEEccCCchhHHHH
Q 000114 1359 NVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a 1374 (2158)
.++|+||||||||.++
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999877
No 481
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=43.06 E-value=10 Score=40.85 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=15.6
Q ss_pred CcEEEEccCCchhHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++|+.|||||.++-
T Consensus 4 ~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999998873
No 482
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=42.86 E-value=20 Score=40.14 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHH
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~ 529 (2158)
+.--+.-|..++..+ ..++-+.+.+|.|||||..+-
T Consensus 5 i~pk~~g~~~~l~~i-~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 5 IRPKTLGQKHYVDAI-DTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCCCSHHHHHHHHHH-HHCSEEEEECCTTSSTTHHHH
T ss_pred cccCCHhHHHHHHhc-cCCCEEEEECCCCCCHHHHHH
Confidence 333455677788775 455668899999999997543
No 483
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=42.51 E-value=13 Score=46.00 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=14.1
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
-++|+||||||||.++.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 47899999999997653
No 484
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=42.23 E-value=13 Score=41.29 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2158)
.-+.++||+|||||...-
T Consensus 5 ~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 458999999999997653
No 485
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=42.15 E-value=16 Score=35.30 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=31.5
Q ss_pred CCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHH
Q 000114 1976 DSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDE 2014 (2158)
Q Consensus 1976 ~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~ 2014 (2158)
-..|..||.|++...+.|.+.| |.|+.||..+...+
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vG---I~s~e~L~~~Ga~~ 38 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAG---IKTPVELKDVGSKE 38 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTT---CCSHHHHHHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHH
Confidence 3568999999999999999999 99999998876554
No 486
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=42.11 E-value=13 Score=39.86 Aligned_cols=19 Identities=26% Similarity=0.643 Sum_probs=16.1
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
+..+++.||.|||||.++-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999998763
No 487
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=42.06 E-value=5.4 Score=45.71 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHcc
Q 000114 1976 DSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 2035 (2158)
Q Consensus 1976 ~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~ 2035 (2158)
.+.|.+|||||+..+++|.+.| +.++.+|...+.++...+-++++...+.|...++.
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~g---f~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREAG---FESVEDVRGADQSALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp ------------------------------------------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3679999999999999988778 89999998888888777777777776777666543
No 488
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=41.83 E-value=13 Score=41.18 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=15.8
Q ss_pred CCcEEEEccCCchhHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l 1376 (2158)
+..+.++||+|||||...-+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45589999999999977643
No 489
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=41.78 E-value=11 Score=48.16 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=17.4
Q ss_pred cCCCcEEEEccCCchhHHHH
Q 000114 1355 NTDDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a 1374 (2158)
.++.++++.||+|+|||..+
T Consensus 39 ~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHH
T ss_pred hcCCeeEeecCchHHHHHHH
Confidence 34678999999999999877
No 490
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=41.68 E-value=11 Score=43.66 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=16.4
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4579999999999998873
No 491
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=41.59 E-value=11 Score=43.60 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
..+++++||+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4569999999999997764
No 492
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=41.43 E-value=12 Score=40.11 Aligned_cols=18 Identities=44% Similarity=0.833 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchHHHH
Q 000114 511 ADNILLCAPTGAGKTNVA 528 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a 528 (2158)
...++++||.|||||.++
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356899999999999765
No 493
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=41.34 E-value=12 Score=45.13 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=14.4
Q ss_pred cEEEEccCCchhHHHH
Q 000114 1359 NVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a 1374 (2158)
.++|+||||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5889999999999877
No 494
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=41.33 E-value=13 Score=45.81 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.9
Q ss_pred cEEEEccCCchhHHHH
Q 000114 1359 NVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a 1374 (2158)
.++|+||||||||.++
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 4789999999999776
No 495
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=41.24 E-value=31 Score=41.13 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=29.0
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc--ccHHHHHHHHHHHHHHh
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKF 1414 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia--P~raLa~q~~~~~~~~f 1414 (2158)
..+++.+|+|+|||..+..-+ ..+.. .++ +++++. +.+.-+.++...|.++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA-~~l~~--~g~--kV~lv~~D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA-KMFVD--EGK--SVVLAAADTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHH--TTC--CEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH-HHHHh--cCC--EEEEEccccccHHHHHHHHHHHHHc
Confidence 457789999999997653322 22222 233 454443 44544555555565443
No 496
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=41.17 E-value=32 Score=37.44 Aligned_cols=62 Identities=10% Similarity=-0.003 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHhcCC-CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1342 FNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~~~-~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
-.+.|..++..++.+. .-.+|.++-|++||......++..-.. .+. ++.+|+|+..-.....
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--~Gr--~V~vLAp~~~s~~~l~ 97 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--QGR--EVQIIAADRRSQMNMK 97 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--TTC--CEEEECSTTHHHHHHS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--cCe--EEEEEcCchHHHHHHH
Confidence 3467999999987644 456778999999998754444433333 233 8999999987655443
No 497
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=41.12 E-value=12 Score=34.86 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=38.0
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcC-chhHHHHHHHHh
Q 000114 1141 QTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRF-PKMGRTLHKFVH 1194 (2158)
Q Consensus 1141 ~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 1194 (2158)
.+.|.++||+|+..+++|.+.=-+++.+.+.+.+++.++-+. ++.+..|..+++
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 467899999999999998765115677888888888777322 455566665543
No 498
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=41.02 E-value=11 Score=40.68 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=14.5
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
.++++||.|||||.++-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 47899999999998763
No 499
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=40.97 E-value=11 Score=40.30 Aligned_cols=18 Identities=33% Similarity=0.283 Sum_probs=15.2
Q ss_pred cEEEEccCCCchHHHHHH
Q 000114 513 NILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l 530 (2158)
.++++||.|||||.++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987643
No 500
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=40.81 E-value=11 Score=46.26 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=17.0
Q ss_pred HcCCCcEEEEccCCCchHHHH
Q 000114 508 LSSADNILLCAPTGAGKTNVA 528 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a 528 (2158)
...++.++++||||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345567999999999999754
Done!