Query 000120
Match_columns 2151
No_of_seqs 241 out of 314
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:37:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2of3_A ZYG-9; multifunctional 86.9 1.9 6.4E-05 50.9 10.0 85 1109-1193 63-160 (266)
2 4fdd_A Transportin-1; heat rep 71.8 2.8E+02 0.0096 37.4 26.1 54 1557-1610 378-431 (852)
3 2qk2_A LP04448P; mini spindles 68.7 13 0.00046 42.2 9.5 128 1027-1195 72-206 (242)
4 4fdd_A Transportin-1; heat rep 65.0 3.7E+02 0.013 36.2 25.8 288 1705-2050 378-702 (852)
5 1b3u_A Protein (protein phosph 52.5 2.4E+02 0.0082 35.5 17.9 81 1110-1194 221-310 (588)
6 4ffb_C Protein STU2; tubulin f 51.2 58 0.002 37.9 10.8 85 1110-1194 121-212 (278)
7 2qk1_A Protein STU2; STU2P, XM 43.4 1.3E+02 0.0045 34.6 12.1 88 1109-1196 121-222 (249)
8 2qk2_A LP04448P; mini spindles 42.0 97 0.0033 34.9 10.6 122 1027-1193 30-161 (242)
9 4b8j_A Importin subunit alpha- 41.8 84 0.0029 39.7 11.1 28 817-844 161-188 (528)
10 2vgl_B AP-2 complex subunit be 38.6 7.5E+02 0.026 31.8 22.1 84 1927-2013 337-422 (591)
11 1u6g_C TIP120 protein, CAND1; 33.2 6E+02 0.021 35.7 18.7 243 1694-2033 56-308 (1230)
12 2jdq_A Importin alpha-1 subuni 30.0 4.3E+02 0.015 31.9 14.5 263 817-1192 108-388 (450)
13 2bpt_A Importin beta-1 subunit 28.3 1.2E+03 0.039 30.8 29.6 395 1556-2031 387-835 (861)
14 2bpt_A Importin beta-1 subunit 26.6 1.2E+03 0.042 30.6 34.5 430 1557-2048 243-712 (861)
15 1b3u_A Protein (protein phosph 24.1 2.8E+02 0.0096 34.9 11.6 87 1707-1798 147-233 (588)
16 2of3_A ZYG-9; multifunctional 23.0 1.4E+02 0.0048 35.0 7.6 82 1109-1194 149-236 (266)
17 3u0r_A Apoptosis inhibitor 5; 21.6 4.1E+02 0.014 33.8 11.6 117 1922-2045 7-124 (507)
No 1
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=86.88 E-value=1.9 Score=50.88 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHhCcc--------hHHHHHHHhhcCCccchhhHHHHHHHHH---hhcCCCCCch--HHHHHHHHHhcc
Q 000120 1109 VALAKLALKNLLLTNLD--------LFPACIDQCYYSDAAIADGYFSVLAEVY---MRQEIPKCEI--QRLLSLILYKVV 1175 (2151)
Q Consensus 1109 ~~lgr~AL~~LL~~N~d--------Ll~~~i~rCY~~~~~va~~yF~vl~~v~---~~~~~~~~~~--~~LL~L~L~~lg 1175 (2151)
|.-|-+.|...++.|++ ++.|+.-|.+.+++++...++.+|..++ .+++|.--++ ..++...+-|+|
T Consensus 63 ~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlG 142 (266)
T 2of3_A 63 HLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTG 142 (266)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhC
Confidence 45688888888888874 4889988888988888888888777655 5556543333 468888899999
Q ss_pred CCChhHHHHHHHHHHHHh
Q 000120 1176 DPSRQIRDDALQMLETLS 1193 (2151)
Q Consensus 1176 ~~~~~IR~~A~~LL~~L~ 1193 (2151)
|++..+|+.+.++|..+.
T Consensus 143 d~k~~vR~~~r~il~~l~ 160 (266)
T 2of3_A 143 EAKDNMRTSVRDIVNVLS 160 (266)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 999999999999999885
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=71.81 E-value=2.8e+02 Score=37.35 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=40.7
Q ss_pred HHHHHHHHhhccchhhhhhhhhHHHHHHhhcccCCchhHHHHHHHHHHHHHHHH
Q 000120 1557 IALILLAEIAYENDEDFREHLPLLFHVTFVSMDSSEDIVLEHCQHLLVNLLYSL 1610 (2151)
Q Consensus 1557 lalifL~dl~~~~~~d~~~~LP~LLH~v~ll~Dh~~~~Vre~~~~LLvnLih~L 1610 (2151)
-|+..|..++-........++|.++-.++-++.+..+.||..|-..+-++...+
T Consensus 378 aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp HHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 455556666544455667899999999999999999999998877777665444
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=68.73 E-value=13 Score=42.17 Aligned_cols=128 Identities=13% Similarity=0.152 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhh--cCCccCCcccccchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCcccccccC
Q 000120 1027 AIQWASMNAMASLL--YGPCFDDNARKMSGRVISWINSLFIEPAPRAPFGYSPADPRTPSYSKHAGEGGRGAASRDRHRG 1104 (2151)
Q Consensus 1027 ~L~~aAl~AMAaLc--~Gp~fd~~~~~~~g~ll~WId~lf~s~~~~~~~~~~p~~~~~~~~~k~~~e~~~~~~~~~~~~~ 1104 (2151)
+++.+|+.|+..|+ .|+-|. .++-.-+..|+..=.++
T Consensus 72 ~V~~~a~~~l~~la~~l~~~~~-------~~~~~ilp~ll~~l~d~---------------------------------- 110 (242)
T 2qk2_A 72 VLVAMAGKCLALLAKGLAKRFS-------NYASACVPSLLEKFKEK---------------------------------- 110 (242)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGH-------HHHHHHHHHHHHGGGCC----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHcCC----------------------------------
Confidence 46678888999888 455442 24445556666431110
Q ss_pred CcchhHHHHHHHHHHHHhCc--chHHHHHHHhhcCCccchhhHHHHHHHHHhhcC---CCCCchHHHHHHHHHhccCCCh
Q 000120 1105 GHHRVALAKLALKNLLLTNL--DLFPACIDQCYYSDAAIADGYFSVLAEVYMRQE---IPKCEIQRLLSLILYKVVDPSR 1179 (2151)
Q Consensus 1105 ~~~~~~lgr~AL~~LL~~N~--dLl~~~i~rCY~~~~~va~~yF~vl~~v~~~~~---~~~~~~~~LL~L~L~~lg~~~~ 1179 (2151)
.+..++-+..||.++...-+ ++++.+.......++.+.......|..++.... ...-...+++...+-.+.|++.
T Consensus 111 ~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~ 190 (242)
T 2qk2_A 111 KPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDP 190 (242)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCCh
Confidence 12235788999999987643 367777676666677787888888888776642 1111234677777778899999
Q ss_pred hHHHHHHHHHHHHhhh
Q 000120 1180 QIRDDALQMLETLSVR 1195 (2151)
Q Consensus 1180 ~IR~~A~~LL~~L~~r 1195 (2151)
+||..|...|..+...
T Consensus 191 ~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 191 TVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988644
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=64.99 E-value=3.7e+02 Score=36.15 Aligned_cols=288 Identities=9% Similarity=0.027 Sum_probs=148.5
Q ss_pred HHHHHHhhcCCCCCh---HHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhccCCCcccchhhHHHHHHhhccCCc
Q 000120 1705 RSHQIYRALRPSVTS---DTCVLLLRCLHRCLGNPIPPVLGFIMEILMTLQVMVENMEPEKVILYPQLFWGCVAMMHTDF 1781 (2151)
Q Consensus 1705 RSfQVfr~L~~~vd~---~~l~~lL~rL~~tis~~~~d~q~f~~eIL~TL~~iv~~L~~~~~~~~pQLFW~avA~L~s~~ 1781 (2151)
-+...++.|....+. ..+.+++..|.+.+.|+++.++.-+...+..+...+..-. .. .++++++=..+.+|+..+
T Consensus 378 aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~-~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP-PD-TYLKPLMTELLKRILDSN 455 (852)
T ss_dssp HHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC-TT-TTHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch-HH-HHHHHHHHHHHHHHhCCC
Confidence 345555666654332 2467788888888888877777666666555555443322 11 246666666677777666
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChhhHHHHhhcCCCCCcccCCCCCcccccccCCCCCCCCCCCCCCCcchHHHHhhccCC
Q 000120 1782 VHVYCQVLELFSRVIDRLSFRDRTTENVLLSSMPRDELDTDGDTGDFQRTESRGYELPPTSGTLPKFEGVQPLVLKGLMS 1861 (2151)
Q Consensus 1782 e~eF~~al~LL~~~L~~ld~~d~~~~~~Ll~~~P~~~~~~~~~~~~l~~l~~~G~~~~~~~~~~~~F~gLq~lllKGLrs 1861 (2151)
...=..|+.-|..+.+..+- .+ .+-++.+.+.+++.+..
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~---~l--------------------------------------~~~l~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACT---EL--------------------------------------VPYLAYILDTLVFAFSK 494 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGG---GG--------------------------------------GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhH---hh--------------------------------------HhHHHHHHHHHHHHHHH
Confidence 66666677777666654420 00 01234566666666654
Q ss_pred CCCh--hHHHHHHHHhhccCCCccccCCchhHHHHHHHHhhHHHHhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHhC
Q 000120 1862 TVSH--GVSIEVLSQITVHSCDSIFGDAETRLLMHITGLLPWLCLQLGKDAVVGPASPLQQQYQKACSVASNIALWCRAK 1939 (2151)
Q Consensus 1862 s~t~--~~Tl~~L~~L~~~~~~~lig~~~~rll~~~lalLP~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~la~~~~~~ 1939 (2151)
.... ...++.+..+... +|+.-.. .-++-.++|.++..+..-.. +.+. .. .+-+.|..+|...
T Consensus 495 ~~~~~~~~~~~ai~~l~~~-----~~~~~~~-~~~~~~l~p~l~~~~~~l~d---~~~~---~~---~~~~~l~~i~~~~ 559 (852)
T 4fdd_A 495 YQHKNLLILYDAIGTLADS-----VGHHLNK-PEYIQMLMPPLIQKWNMLKD---EDKD---LF---PLLECLSSVATAL 559 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHH-----HGGGGCC-HHHHHHHHHHHHHHHHHSCT---TCTT---HH---HHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHH-----hhhhhcc-HHHHHHHHHHHHHHHHhccc---ccHH---HH---HHHHHHHHHHHHH
Confidence 4322 2234555555432 2221100 12344667876654421100 1111 11 2234455555443
Q ss_pred CC---ChHHHHHH----HHhc-----------c-cccc-hhhHHH-------hHHHhhhhhccccc-chHHHHHHHHHHh
Q 000120 1940 SL---DELGTVFV----AYSR-----------G-EIKS-IDNLLA-------CVSPLLWNEWFPKH-SALAFGHLLRLLE 1991 (2151)
Q Consensus 1940 ~~---~~La~vl~----~ya~-----------~-~f~~-~~dfl~-------~~~~~l~~~~fp~~-~~~~l~~L~~lL~ 1991 (2151)
|. +-+..++. .+.. . .+.. .++|.. .++..+-..+.|-. +...+..++..+.
T Consensus 560 g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 639 (852)
T 4fdd_A 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ 639 (852)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTT
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhC
Confidence 31 22222222 1111 0 2222 234443 34444433332321 2346778888887
Q ss_pred cCChHHHHHHHHHHHHhhcCCCCC-CCCchhhHHHHHHHhcCcC---HHHHHHHHHHHHhccc
Q 000120 1992 KGPVEYQRVILLMLKALLQHTPMD-ASQSPHMYAIVSQLVESTL---CWEALSVLEALLQSCS 2050 (2151)
Q Consensus 1992 ~~~~~~~~~~l~iL~~ll~~~~~~-~~~~~~l~~~l~rll~t~~---~~eAL~VL~~v~~~s~ 2050 (2151)
......++.....|..+....+-. ....++++..+.+.|..+. +..|...+..+....+
T Consensus 640 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~ 702 (852)
T 4fdd_A 640 DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG 702 (852)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHG
T ss_pred CCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh
Confidence 656778888888888777655432 2234567767778886643 5677777877665543
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=52.50 E-value=2.4e+02 Score=35.53 Aligned_cols=81 Identities=14% Similarity=0.066 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCcc------hHHHHHHHhhcCCccc---hhhHHHHHHHHHhhcCCCCCchHHHHHHHHHhccCCChh
Q 000120 1110 ALAKLALKNLLLTNLD------LFPACIDQCYYSDAAI---ADGYFSVLAEVYMRQEIPKCEIQRLLSLILYKVVDPSRQ 1180 (2151)
Q Consensus 1110 ~lgr~AL~~LL~~N~d------Ll~~~i~rCY~~~~~v---a~~yF~vl~~v~~~~~~~~~~~~~LL~L~L~~lg~~~~~ 1180 (2151)
..+.++|..+.+..++ ++..+..-+...+..+ +...+..+++.+.... -...++...+-.+.|++.+
T Consensus 221 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~ 296 (588)
T 1b3u_A 221 LLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI----TKTDLVPAFQNLMKDCEAE 296 (588)
T ss_dssp TTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH----HHHTHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc----chhHHHHHHHHHhCCCcHH
Confidence 3566777777766432 3333333333334333 3444555554432110 0123455555556799999
Q ss_pred HHHHHHHHHHHHhh
Q 000120 1181 IRDDALQMLETLSV 1194 (2151)
Q Consensus 1181 IR~~A~~LL~~L~~ 1194 (2151)
+|..|..-|..+..
T Consensus 297 vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 297 VRAAASHKVKEFCE 310 (588)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887753
No 6
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=51.17 E-value=58 Score=37.87 Aligned_cols=85 Identities=8% Similarity=0.049 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhCc--c-hHHHHHHHhhcCCccchhhHHHHHHHHHhhcCCCCCchHHHHH----HHHHhccCCChhHH
Q 000120 1110 ALAKLALKNLLLTNL--D-LFPACIDQCYYSDAAIADGYFSVLAEVYMRQEIPKCEIQRLLS----LILYKVVDPSRQIR 1182 (2151)
Q Consensus 1110 ~lgr~AL~~LL~~N~--d-Ll~~~i~rCY~~~~~va~~yF~vl~~v~~~~~~~~~~~~~LL~----L~L~~lg~~~~~IR 1182 (2151)
+.+.+++..+.+.-. + +++.++.-.-..++.+...+...|++++.+.....+++...+. .+.--++|++.+||
T Consensus 121 ~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR 200 (278)
T 4ffb_C 121 TQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVR 200 (278)
T ss_dssp HHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHH
Confidence 456666666665422 2 4444443333357788899999999999886555555544333 23334689999999
Q ss_pred HHHHHHHHHHhh
Q 000120 1183 DDALQMLETLSV 1194 (2151)
Q Consensus 1183 ~~A~~LL~~L~~ 1194 (2151)
+.|.+++..+..
T Consensus 201 ~aA~~l~~~ly~ 212 (278)
T 4ffb_C 201 SQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
No 7
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=43.42 E-value=1.3e+02 Score=34.56 Aligned_cols=88 Identities=10% Similarity=0.099 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHh-Cc--------chHHHHHHHhhcCCccchhhHHHHHHHHHhhcCCCCC----ch-HHHHHHHHHhc
Q 000120 1109 VALAKLALKNLLLT-NL--------DLFPACIDQCYYSDAAIADGYFSVLAEVYMRQEIPKC----EI-QRLLSLILYKV 1174 (2151)
Q Consensus 1109 ~~lgr~AL~~LL~~-N~--------dLl~~~i~rCY~~~~~va~~yF~vl~~v~~~~~~~~~----~~-~~LL~L~L~~l 1174 (2151)
++-+..||.++.++ || ++++..+.-.-+.++++-......|+.++......+- .+ .+++....-.+
T Consensus 121 ~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l 200 (249)
T 2qk1_A 121 IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV 200 (249)
T ss_dssp HHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh
Confidence 46788999999986 42 2444444433335667888888888888876653211 12 34666666667
Q ss_pred cCCChhHHHHHHHHHHHHhhhh
Q 000120 1175 VDPSRQIRDDALQMLETLSVRE 1196 (2151)
Q Consensus 1175 g~~~~~IR~~A~~LL~~L~~r~ 1196 (2151)
.|++++||..|+..|..+....
T Consensus 201 ~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 201 NDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999996443
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=41.98 E-value=97 Score=34.91 Aligned_cols=122 Identities=11% Similarity=0.210 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhhcC-CccCCcccccchhHHHHHHHhhc-CCCCCCCCCCCCCCCCCCCCCcccCCCCCCCcccccccC
Q 000120 1027 AIQWASMNAMASLLYG-PCFDDNARKMSGRVISWINSLFI-EPAPRAPFGYSPADPRTPSYSKHAGEGGRGAASRDRHRG 1104 (2151)
Q Consensus 1027 ~L~~aAl~AMAaLc~G-p~fd~~~~~~~g~ll~WId~lf~-s~~~~~~~~~~p~~~~~~~~~k~~~e~~~~~~~~~~~~~ 1104 (2151)
+.+.+|+.++..++.| |-+.... -+.+..-+-.++. .++.
T Consensus 30 ~~R~~a~~~L~~l~~~~~~~~~~~---~~~i~~~L~~~l~kd~~~----------------------------------- 71 (242)
T 2qk2_A 30 TLRKESLEVLEKLLTDHPKLENGE---YGALVSALKKVITKDSNV----------------------------------- 71 (242)
T ss_dssp HHHHHHHHHHHHHHHHCSSBCCCC---CHHHHHHHHHHHHHCSCH-----------------------------------
T ss_pred HHHHHHHHHHHHHHccCCCCCCCC---HHHHHHHHHHHhccCCCH-----------------------------------
Confidence 4567899999999965 5332211 2356666666663 3221
Q ss_pred CcchhHHHHHHHHHHHHhCc--------chHHHHHHHhhcCCccchhhHHHHHHHHHhhcCCCCCchHHHHHHHHHhccC
Q 000120 1105 GHHRVALAKLALKNLLLTNL--------DLFPACIDQCYYSDAAIADGYFSVLAEVYMRQEIPKCEIQRLLSLILYKVVD 1176 (2151)
Q Consensus 1105 ~~~~~~lgr~AL~~LL~~N~--------dLl~~~i~rCY~~~~~va~~yF~vl~~v~~~~~~~~~~~~~LL~L~L~~lg~ 1176 (2151)
..+..|..+|..|...-. .++..+++++-..+..+.+....++..++.. +++..++...+-.+.|
T Consensus 72 --~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~ll~~l~~~l~~ 144 (242)
T 2qk2_A 72 --VLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS-----TSLEAQQESIVESLSN 144 (242)
T ss_dssp --HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-----SCHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcC
Confidence 123577788877775411 2556666665555667888888888888743 3456778888888889
Q ss_pred CChhHHHHHHHHHHHHh
Q 000120 1177 PSRQIRDDALQMLETLS 1193 (2151)
Q Consensus 1177 ~~~~IR~~A~~LL~~L~ 1193 (2151)
.++.+|..++..|..+-
T Consensus 145 ~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 145 KNPSVKSETALFIARAL 161 (242)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 99999999999999863
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=41.82 E-value=84 Score=39.74 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=23.7
Q ss_pred HHHHHcccccCCChhHHHHHHHHhCCCC
Q 000120 817 LYHFIFPSLKSGSEAHIHAATMALGHSH 844 (2151)
Q Consensus 817 LFk~vvPlL~se~~~iRdAvV~aLG~in 844 (2151)
....++.+|++++..+|+.++.+||.+.
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVA 188 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 3457778889999999999999999884
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=38.61 E-value=7.5e+02 Score=31.76 Aligned_cols=84 Identities=6% Similarity=0.069 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHhcccccchhhHHHhHHHhhhh--hcccccchHHHHHHHHHHhcCChHHHHHHHHH
Q 000120 1927 SVASNIALWCRAKSLDELGTVFVAYSRGEIKSIDNLLACVSPLLWN--EWFPKHSALAFGHLLRLLEKGPVEYQRVILLM 2004 (2151)
Q Consensus 1927 ~~A~~la~~~~~~~~~~La~vl~~ya~~~f~~~~dfl~~~~~~l~~--~~fp~~~~~~l~~L~~lL~~~~~~~~~~~l~i 2004 (2151)
...+.|..+|++.+...+-.-|..|.+. ...+|-+.++..|+. .-||.....++.+|+.+|..........+...
T Consensus 337 ~al~~L~~l~~~~nv~~iv~~L~~~l~~---~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~ 413 (591)
T 2vgl_B 337 EKLDIMIRLASQANIAQVLAELKEYATE---VDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVV 413 (591)
T ss_dssp HHHHHHHHTCCSSTHHHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCChhhHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 3345566666555544444445556543 246777777666642 22455556788999999987766666666777
Q ss_pred HHHhhcCCC
Q 000120 2005 LKALLQHTP 2013 (2151)
Q Consensus 2005 L~~ll~~~~ 2013 (2151)
|+.+++..+
T Consensus 414 l~~ii~~~p 422 (591)
T 2vgl_B 414 IRDIFRKYP 422 (591)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHCc
Confidence 777776533
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=33.19 E-value=6e+02 Score=35.68 Aligned_cols=243 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred HhhcCCccchhHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhccCCC------cccchh
Q 000120 1694 AMECTSRHLACRSHQIYRALRPSVTSDTCVLLLRCLHRCLGNPIPPVLGFIMEILMTLQVMVENMEPE------KVILYP 1767 (2151)
Q Consensus 1694 Atsc~~RhlA~RSfQVfr~L~~~vd~~~l~~lL~rL~~tis~~~~d~q~f~~eIL~TL~~iv~~L~~~------~~~~~p 1767 (2151)
+..-++..+.--+...++.|...+....+..++..|.+.+.++++.++.-+.. +|..++..+.+. ...+.+
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~---~L~~i~~~l~~~~~~~~~~~~~~~ 132 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSI---GLKTVIGELPPASSGSALAANVCK 132 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHH---HHHHHHHHCC-----CCTHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHH---HHHHHHHhCCCcccccchHHHHHH
Q ss_pred hHHHHHHhhcc-CCcHHHHHHHHHHHHHHhhhcCCCChhhHHHHhhcCCCCCcccCCCCCcccccccCCCCCCCCCCCCC
Q 000120 1768 QLFWGCVAMMH-TDFVHVYCQVLELFSRVIDRLSFRDRTTENVLLSSMPRDELDTDGDTGDFQRTESRGYELPPTSGTLP 1846 (2151)
Q Consensus 1768 QLFW~avA~L~-s~~e~eF~~al~LL~~~L~~ld~~d~~~~~~Ll~~~P~~~~~~~~~~~~l~~l~~~G~~~~~~~~~~~ 1846 (2151)
+++=....+++ +.....=..|+..|..++... +....+
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~-----------------------------------------~~~l~~ 171 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ-----------------------------------------GGLLVN 171 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT-----------------------------------------CSSCTT
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh-----------------------------------------HhHHHH
Q ss_pred CCcchHHHHhhccCCCCCh--hHHHHHHHHhhccCCCccccCCchhHHHHHHHHhhHHHHhhccCCCCCCCCchhHHHHH
Q 000120 1847 KFEGVQPLVLKGLMSTVSH--GVSIEVLSQITVHSCDSIFGDAETRLLMHITGLLPWLCLQLGKDAVVGPASPLQQQYQK 1924 (2151)
Q Consensus 1847 ~F~gLq~lllKGLrss~t~--~~Tl~~L~~L~~~~~~~lig~~~~rll~~~lalLP~~l~~~~~~~~~~~~~~~~~~~~~ 1924 (2151)
.++.+.+.++++|.++... ..+++.|..+.....+..+.. .+|.++..+.++.......
T Consensus 172 ~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~-----------~l~~l~~~L~~~~~~~~r~-------- 232 (1230)
T 1u6g_C 172 FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVD-----------LIEHLLSELSKNDSMSTTR-------- 232 (1230)
T ss_dssp THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTT-----------HHHHHHHHHHHTCSSCSCT--------
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHHhccCCchhHHH--------
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHhcccccchhhHHHhHHHhhhhhcccccchHHHHHHHHHHhcCChHHHHHHHHH
Q 000120 1925 ACSVASNIALWCRAKSLDELGTVFVAYSRGEIKSIDNLLACVSPLLWNEWFPKHSALAFGHLLRLLEKGPVEYQRVILLM 2004 (2151)
Q Consensus 1925 ~~~~A~~la~~~~~~~~~~La~vl~~ya~~~f~~~~dfl~~~~~~l~~~~fp~~~~~~l~~L~~lL~~~~~~~~~~~l~i 2004 (2151)
.+++.+..++... ...|..|-..++.+++..+.......+...++.
T Consensus 233 --~a~~~l~~l~~~~--------------------------------~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~ 278 (1230)
T 1u6g_C 233 --TYIQCIAAISRQA--------------------------------GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQA 278 (1230)
T ss_dssp --THHHHHHHHHHHS--------------------------------SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH
T ss_pred --HHHHHHHHHHHHh--------------------------------HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q ss_pred HHHhhcCCCCC-CCCchhhHHHHHHHhcCc
Q 000120 2005 LKALLQHTPMD-ASQSPHMYAIVSQLVEST 2033 (2151)
Q Consensus 2005 L~~ll~~~~~~-~~~~~~l~~~l~rll~t~ 2033 (2151)
+..+....+-. ....++++.++++.+..+
T Consensus 279 l~~l~~~~~~~~~~~l~~li~~ll~~l~~d 308 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPHVSTIINICLKYLTYD 308 (1230)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHChHHHHHhHHHHHHHHHHHhCCC
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=30.01 E-value=4.3e+02 Score=31.92 Aligned_cols=263 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHcccccCCChhHHHHHHHHhCCC---CHHHHHHHHH--HHHHHHHhhccccccCcccccccchhhHHHHHHHHHHH
Q 000120 817 LYHFIFPSLKSGSEAHIHAATMALGHS---HLEACEIMFS--ELTSFIDEVSSETEFKPKWKMQSQKLRREELRVHIANI 891 (2151)
Q Consensus 817 LFk~vvPlL~se~~~iRdAvV~aLG~i---n~~~~~~Lle--eL~~~i~e~~~~~~~~~~~~~~~rr~rrd~LR~~v~~I 891 (2151)
+...++.+|+++++.+|+.++.+||.+ ++..-..+++ .+..+++-. .....+. +|...+..
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l----~~~~~~~----------v~~~a~~~ 173 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLF----SKQNRLT----------MTRNAVWA 173 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT----TSCCCHH----------HHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh----cCCCCHH----------HHHHHHHH
Q ss_pred HHHHhhhc-CCCCcCCchhhHHHHHHHHHHHhHhhcCcccccccchHHHHHHHHHHHHhhchhcccccCccCCHHHHHHH
Q 000120 892 YRTVAENI-WPGLLSRKPVFRLHYLKFIDDTTRHILTASAESFHETQPLRYALASVLRSLAPEFVDSKSEKFDIRTRKKL 970 (2151)
Q Consensus 892 ~~l~a~~~-~~~~L~~~~~l~~~~l~FI~~~~~~l~~~e~~~~~e~q~LR~~fc~li~~l~~~~~~~~~~~fp~e~R~sl 970 (2151)
+..++... ..........+.+.+++.+. .+-..+|...|..+.++. .........-....+
T Consensus 174 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~--------------~~~~~v~~~a~~~L~~l~----~~~~~~~~~~~~~~~ 235 (450)
T 2jdq_A 174 LSNLCRGKSPPPEFAKVSPCLNVLSWLLF--------------VSDTDVLADACWALSYLS----DGPNDKIQAVIDAGV 235 (450)
T ss_dssp HHHHHCCSSSCCCGGGTGGGHHHHHHHTT--------------CCCHHHHHHHHHHHHHHT----SSSHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHHHc--------------cCCHHHHHHHHHHHHHHH----CCCcHHHHHHHHcCc
Q ss_pred HHHHhhhcCCCCCCCCCCCCchhhhHHHHHhhhhhccccCcchhhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccCCccc
Q 000120 971 FDLLLSWSDDTGSTWGQDGVNDYRREVERYKASQHTRSKDSVDKISFDKELSEQVEAIQWASMNAMASLLYGPCFDDNAR 1050 (2151)
Q Consensus 971 F~l~~eWcg~~~~~~g~~~~s~~~~~~~r~~~~~~~~~k~~~~~~~~~~~~~~q~~~L~~aAl~AMAaLc~Gp~fd~~~~ 1050 (2151)
+..+.+--.... ..++..|+.|+..|+.|.--.....
T Consensus 236 i~~L~~ll~~~~-------------------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~ 272 (450)
T 2jdq_A 236 CRRLVELLMHND-------------------------------------------YKVVSPALRAVGNIVTGDDIQTQVI 272 (450)
T ss_dssp HHHHHHHTTCSC-------------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHCCCc-------------------------------------------hhHHHHHHHHHHHHhhCChHHHHHH
Q ss_pred ccchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCcccccccCCcchhHHHHHHHHHHHHhCcc-----
Q 000120 1051 KMSGRVISWINSLFIEPAPRAPFGYSPADPRTPSYSKHAGEGGRGAASRDRHRGGHHRVALAKLALKNLLLTNLD----- 1125 (2151)
Q Consensus 1051 ~~~g~ll~WId~lf~s~~~~~~~~~~p~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~lgr~AL~~LL~~N~d----- 1125 (2151)
...| ++..|-.++.+++..+ +.-+..+|.|+...+++
T Consensus 273 ~~~~-~l~~L~~ll~~~~~~v-------------------------------------r~~a~~~L~~l~~~~~~~~~~~ 314 (450)
T 2jdq_A 273 LNCS-ALQSLLHLLSSPKESI-------------------------------------KKEACWTISNITAGNRAQIQTV 314 (450)
T ss_dssp HTTT-HHHHHHHHTTCSSHHH-------------------------------------HHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHCc-cHHHHHHHHcCCCHHH-------------------------------------HHHHHHHHHHHHcCCHHHHHHH
Q ss_pred ----hHHHHHHHhhcCCccchhhHHHHHHHHHhhcCCCCCchH---HHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000120 1126 ----LFPACIDQCYYSDAAIADGYFSVLAEVYMRQEIPKCEIQ---RLLSLILYKVVDPSRQIRDDALQMLETL 1192 (2151)
Q Consensus 1126 ----Ll~~~i~rCY~~~~~va~~yF~vl~~v~~~~~~~~~~~~---~LL~L~L~~lg~~~~~IR~~A~~LL~~L 1192 (2151)
++...++..-.+++.+......+|+.+....+....... .++...+-.+.+++.++|..|...|..+
T Consensus 315 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 388 (450)
T 2jdq_A 315 IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388 (450)
T ss_dssp HHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=28.27 E-value=1.2e+03 Score=30.83 Aligned_cols=395 Identities=10% Similarity=0.020 Sum_probs=183.5
Q ss_pred HHHHHHHHHhhccch-hhhhhhhhHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHccccccccccCCCChh-hHHHHH
Q 000120 1556 DIALILLAEIAYEND-EDFREHLPLLFHVTFVSMDSSEDIVLEHCQHLLVNLLYSLAGRHLELYEVENSDGEN-KQQVVS 1633 (2151)
Q Consensus 1556 qlalifL~dl~~~~~-~d~~~~LP~LLH~v~ll~Dh~~~~Vre~~~~LLvnLih~L~~~~l~l~~~~~~~~~~-~~~v~~ 1633 (2151)
+-|+..+..++-... .....+++.++..++-.+.+..+.||..+-..|-++...+...... ... .+-+..
T Consensus 387 ~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--------~~~~~~~l~~ 458 (861)
T 2bpt_A 387 EAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP--------QQHLPGVVQA 458 (861)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT--------TTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC--------HHHHHHHHHH
Confidence 345666776664332 5677889988888877777889999998876666665544321000 011 122233
Q ss_pred HHHHHHhcCCCCCCCCCCcccccCCCCcHHHHHHHHHHHHH--hhccCcchHHHHHHHHHHHHhhcCC--ccchhHHHHH
Q 000120 1634 LIKYVQSKRGSMMWENEDPTVVRTELPSAALLSALVQSMVD--AIFFQGDLRETWGAEALKWAMECTS--RHLACRSHQI 1709 (2151)
Q Consensus 1634 li~~l~~~~~~~~W~~ed~~~~~~~~~s~~~L~~~v~~i~e--~~~~~~~l~~~W~~~AL~wAtsc~~--RhlA~RSfQV 1709 (2151)
+++.+. ++. .. .......+..++...-+ .-...|-+.+-+... --.+..+. .++....+..
T Consensus 459 l~~~l~----------~~~-~v--~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L--~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 459 CLIGLQ----------DHP-KV--ATNCSWTIINLVEQLAEATPSPIYNFYPALVDGL--IGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp HHHHHT----------SCH-HH--HHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHH--HHHHTCSCCGGGHHHHHHHH
T ss_pred HHHHhc----------cCh-HH--HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH--HHHHhCcCcchHHHHHHHHH
Confidence 333331 110 00 00111222222222110 000012333333322 12222222 2232233444
Q ss_pred HhhcCCCCC---h----HHHHHHHHHHHHhhcCC-------C-CChhhHHHHHHHHHHHHHhccCCCcccchhhHHHHHH
Q 000120 1710 YRALRPSVT---S----DTCVLLLRCLHRCLGNP-------I-PPVLGFIMEILMTLQVMVENMEPEKVILYPQLFWGCV 1774 (2151)
Q Consensus 1710 fr~L~~~vd---~----~~l~~lL~rL~~tis~~-------~-~d~q~f~~eIL~TL~~iv~~L~~~~~~~~pQLFW~av 1774 (2151)
++.|..... . ..+..++..|.+++.-. + ++....-..++.+|..++..+..+-..+.++++=...
T Consensus 524 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 603 (861)
T 2bpt_A 524 LTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFF 603 (861)
T ss_dssp HHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred HHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 444432222 1 23333455555542110 0 0111223356667777777776543345677777777
Q ss_pred hhccCCcH-HHHHHHHHHHHHHhhhcCCCChhhHHHHhhcCCCCCcccCCCCCcccccccCCCCCCCCCCCCCCCcchHH
Q 000120 1775 AMMHTDFV-HVYCQVLELFSRVIDRLSFRDRTTENVLLSSMPRDELDTDGDTGDFQRTESRGYELPPTSGTLPKFEGVQP 1853 (2151)
Q Consensus 1775 A~L~s~~e-~eF~~al~LL~~~L~~ld~~d~~~~~~Ll~~~P~~~~~~~~~~~~l~~l~~~G~~~~~~~~~~~~F~gLq~ 1853 (2151)
.+|+.... ..-..++..+..+...++ .+ +.+-++.+-+
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~---------------~~--------------------------~~~~l~~i~~ 642 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLG---------------KG--------------------------FEKYLETFSP 642 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHG---------------GG--------------------------GHHHHHHHHH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHh---------------hh--------------------------HHHHHHHHHH
Confidence 77776544 444555556655444331 00 0111346777
Q ss_pred HHhhccCCCC--ChhHHHHHHHHhhccCCCccccCCchhHHHHHHHHhhHHHHhhccCCCCCCCCchhHHHHHHHHHHHH
Q 000120 1854 LVLKGLMSTV--SHGVSIEVLSQITVHSCDSIFGDAETRLLMHITGLLPWLCLQLGKDAVVGPASPLQQQYQKACSVASN 1931 (2151)
Q Consensus 1854 lllKGLrss~--t~~~Tl~~L~~L~~~~~~~lig~~~~rll~~~lalLP~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 1931 (2151)
.+++++.+.. ....++.++..+... +|. .+.-.+-.++|.++..+.+... +... .+.+.. .
T Consensus 643 ~l~~~l~~~~~~vr~~a~~~l~~l~~~-----~~~---~~~~~~~~l~~~l~~~l~~~~~---~~~v---r~~~~~---~ 705 (861)
T 2bpt_A 643 YLLKALNQVDSPVSITAVGFIADISNS-----LEE---DFRRYSDAMMNVLAQMISNPNA---RREL---KPAVLS---V 705 (861)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHH-----TGG---GGHHHHHHHHHHHHHHHHCTTC---CTTH---HHHHHH---H
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHH-----hch---hccchHHHHHHHHHHHhCCccc---cHhh---hHHHHH---H
Confidence 8888886443 345666777776542 222 2333345667776666543211 1111 122333 3
Q ss_pred HHHHHHhCC---CChHHHHHHHHh---ccccc-chh--------------hHHHhHHHhhhh--hcccccchHHHHHHHH
Q 000120 1932 IALWCRAKS---LDELGTVFVAYS---RGEIK-SID--------------NLLACVSPLLWN--EWFPKHSALAFGHLLR 1988 (2151)
Q Consensus 1932 la~~~~~~~---~~~La~vl~~ya---~~~f~-~~~--------------dfl~~~~~~l~~--~~fp~~~~~~l~~L~~ 1988 (2151)
+..++...| .+-+..++..+. ..... ..+ +.+..++..+.. ..|-.|-..++.+|..
T Consensus 706 l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~ 785 (861)
T 2bpt_A 706 FGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQ 785 (861)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 444443322 222444444332 11110 011 223333333321 1233355567777777
Q ss_pred HHhcC----ChHHHHHHHHHHHHhhcCC-CCC-CCCch-hhHHHHHHHhc
Q 000120 1989 LLEKG----PVEYQRVILLMLKALLQHT-PMD-ASQSP-HMYAIVSQLVE 2031 (2151)
Q Consensus 1989 lL~~~----~~~~~~~~l~iL~~ll~~~-~~~-~~~~~-~l~~~l~rll~ 2031 (2151)
.+... ....++..+..|..|.... .-. ....+ +++..+++.+.
T Consensus 786 ~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 786 VAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTR 835 (861)
T ss_dssp HHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHH
T ss_pred HHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHh
Confidence 77542 4566777788888887755 221 22334 67777777666
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=26.64 E-value=1.2e+03 Score=30.58 Aligned_cols=430 Identities=10% Similarity=0.057 Sum_probs=194.5
Q ss_pred HHHHHHHHhhccchhhhhhhhh-HHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHccccccccccC----CCChhhHHH
Q 000120 1557 IALILLAEIAYENDEDFREHLP-LLFHVTFVSMDSSEDIVLEHCQHLLVNLLYSLAGRHLELYEVEN----SDGENKQQV 1631 (2151)
Q Consensus 1557 lalifL~dl~~~~~~d~~~~LP-~LLH~v~ll~Dh~~~~Vre~~~~LLvnLih~L~~~~l~l~~~~~----~~~~~~~~v 1631 (2151)
.++-.|.+++-.....+..|++ .++..++-.+++..+.||..|-+.+.+++...........+... .....++.+
T Consensus 243 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (861)
T 2bpt_A 243 AAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI 322 (861)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH
Confidence 4455566665544455677888 88888777788888999999888777766544211000000000 000112222
Q ss_pred HHH----HHHHHhcCCCCCCCCCCcccccCCCCcHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhhcCCccchhHHH
Q 000120 1632 VSL----IKYVQSKRGSMMWENEDPTVVRTELPSAALLSALVQSMVDAIFFQGDLRETWGAEALKWAMECTSRHLACRSH 1707 (2151)
Q Consensus 1632 ~~l----i~~l~~~~~~~~W~~ed~~~~~~~~~s~~~L~~~v~~i~e~~~~~~~l~~~W~~~AL~wAtsc~~RhlA~RSf 1707 (2151)
..+ ++.++..+ +|...+.+.+.. .....+..+.+.+ . .++-...-....+... -+....---+.
T Consensus 323 ~~il~~ll~~l~~~~-------~d~~d~~~~~r~--~a~~~L~~l~~~~-~-~~~~~~l~~~l~~~l~-~~~~~~r~~a~ 390 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQN-------EDPEDDDWNVSM--SAGACLQLFAQNC-G-NHILEPVLEFVEQNIT-ADNWRNREAAV 390 (861)
T ss_dssp HHHHHHHHHHTTCCC-------CC-CCCCCHHHH--HHHHHHHHHHHHH-G-GGGHHHHHHHHHHHTT-CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-------cccccccCcHHH--HHHHHHHHHHHHc-c-HhHHHHHHHHHHHHcC-CCChhHHHHHH
Confidence 333 33332211 111001111110 1111222222211 0 1111111111111111 11112222334
Q ss_pred HHHhhcCCCCCh----HHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhccCCC--cccchhhHHHHHHhhccCCc
Q 000120 1708 QIYRALRPSVTS----DTCVLLLRCLHRCLGNPIPPVLGFIMEILMTLQVMVENMEPE--KVILYPQLFWGCVAMMHTDF 1781 (2151)
Q Consensus 1708 QVfr~L~~~vd~----~~l~~lL~rL~~tis~~~~d~q~f~~eIL~TL~~iv~~L~~~--~~~~~pQLFW~avA~L~s~~ 1781 (2151)
..++.|...... ..+.+++..|.+.+.|+++.++.-+.. +|..+...+.++ ...++++++=..+.+|+..
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~---~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~- 466 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAW---CIGRIADSVAESIDPQQHLPGVVQACLIGLQDH- 466 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHH---HHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH---HHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-
Confidence 556667655542 345667778888888877666654444 555555544321 1124677766666677654
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChhhHHHHhhcCCCCCcccCCCCCcccccccCCCCCCCCCCCCCCCcchHHHHhhccCC
Q 000120 1782 VHVYCQVLELFSRVIDRLSFRDRTTENVLLSSMPRDELDTDGDTGDFQRTESRGYELPPTSGTLPKFEGVQPLVLKGLMS 1861 (2151)
Q Consensus 1782 e~eF~~al~LL~~~L~~ld~~d~~~~~~Ll~~~P~~~~~~~~~~~~l~~l~~~G~~~~~~~~~~~~F~gLq~lllKGLrs 1861 (2151)
...-..|...|..+.+.++ + .+... ..+.++.+-+.+++.+.+
T Consensus 467 ~~v~~~a~~al~~l~~~~~--~----------~~~~~-------------------------l~~~~~~il~~L~~~l~~ 509 (861)
T 2bpt_A 467 PKVATNCSWTIINLVEQLA--E----------ATPSP-------------------------IYNFYPALVDGLIGAANR 509 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHS--S----------SSSCG-------------------------GGGGHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhcc--c----------ccchh-------------------------hHHHHHHHHHHHHHHHhC
Confidence 4444555666666555442 0 00000 012245677777888875
Q ss_pred CC----ChhHHHHHHHHhhccCCCccccCCchhHHHHHHHHhhHHHHhhccCCCC---CCCCch-hHHHHHHHHHHHHHH
Q 000120 1862 TV----SHGVSIEVLSQITVHSCDSIFGDAETRLLMHITGLLPWLCLQLGKDAVV---GPASPL-QQQYQKACSVASNIA 1933 (2151)
Q Consensus 1862 s~----t~~~Tl~~L~~L~~~~~~~lig~~~~rll~~~lalLP~~l~~~~~~~~~---~~~~~~-~~~~~~~~~~A~~la 1933 (2151)
.. ....+++.|..+....... ..-.+-.++|.++..+.+.-.. ....+. ......-..+...|.
T Consensus 510 ~d~~~~vr~~a~~al~~l~~~~~~~--------~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 581 (861)
T 2bpt_A 510 IDNEFNARASAFSALTTMVEYATDT--------VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLA 581 (861)
T ss_dssp SCCGGGHHHHHHHHHHHHHHHCCGG--------GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHcchh--------hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHH
Confidence 43 3456777888776532211 1222335566655554321000 000000 000111123445566
Q ss_pred HHHHhCCC---ChHHHHHHH----Hhcccc-cchhh---HHHhHHHhhhhhcccccchHHHHHHHHHHhcCChHHHHHHH
Q 000120 1934 LWCRAKSL---DELGTVFVA----YSRGEI-KSIDN---LLACVSPLLWNEWFPKHSALAFGHLLRLLEKGPVEYQRVIL 2002 (2151)
Q Consensus 1934 ~~~~~~~~---~~La~vl~~----ya~~~f-~~~~d---fl~~~~~~l~~~~fp~~~~~~l~~L~~lL~~~~~~~~~~~l 2002 (2151)
.++...|. +-+..+|.. +....- .-.++ ++..++..+...|.| |-..++..|+..|.......+...+
T Consensus 582 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~~~~~~vr~~a~ 660 (861)
T 2bpt_A 582 AVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK-YLETFSPYLLKALNQVDSPVSITAV 660 (861)
T ss_dssp HHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHhccccHHHHHHHH
Confidence 77765442 333444433 322211 11222 334444444333333 4445677788888644455666666
Q ss_pred HHHHHhhcCCCCC-CCCchhhHHHHHHHhcCc-----CHHHHHHHHHHHHhc
Q 000120 2003 LMLKALLQHTPMD-ASQSPHMYAIVSQLVEST-----LCWEALSVLEALLQS 2048 (2151)
Q Consensus 2003 ~iL~~ll~~~~~~-~~~~~~l~~~l~rll~t~-----~~~eAL~VL~~v~~~ 2048 (2151)
.++..+...++-. ....++++..+.+.++.+ .-..|+..+..++..
T Consensus 661 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 661 GFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 7776666554311 011234555555665532 344455555555443
No 15
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=24.10 E-value=2.8e+02 Score=34.87 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=49.9
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhccCCCcccchhhHHHHHHhhccCCcHHHHH
Q 000120 1707 HQIYRALRPSVTSDTCVLLLRCLHRCLGNPIPPVLGFIMEILMTLQVMVENMEPEKVILYPQLFWGCVAMMHTDFVHVYC 1786 (2151)
Q Consensus 1707 fQVfr~L~~~vd~~~l~~lL~rL~~tis~~~~d~q~f~~eIL~TL~~iv~~L~~~~~~~~pQLFW~avA~L~s~~e~eF~ 1786 (2151)
.++++.+.+.+.+....+++..|.+.+.|++++++..+.+.| ..+...+.++. ..+.++=....+++.+.+..=.
T Consensus 147 ~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l---~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~ 221 (588)
T 1b3u_A 147 CGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL---GEFAKVLELDN--VKSEIIPMFSNLASDEQDSVRL 221 (588)
T ss_dssp GGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH---HHHHHTSCHHH--HHHTHHHHHHHHHTCSCHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHHHHHhcHHh--HHHHHHHHHHHHhcCCcHHHHH
Confidence 345666677777777778888888888888777777666654 55555443321 1233332233445544444444
Q ss_pred HHHHHHHHHhhh
Q 000120 1787 QVLELFSRVIDR 1798 (2151)
Q Consensus 1787 ~al~LL~~~L~~ 1798 (2151)
.|+..|..+...
T Consensus 222 ~a~~~l~~l~~~ 233 (588)
T 1b3u_A 222 LAVEACVNIAQL 233 (588)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455555554443
No 16
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=22.99 E-value=1.4e+02 Score=35.04 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHh-Ccc-hHHHHHHHhhc-CCccchhhHHHHHHHHHhhcCCCCCchHHHH---HHHHHhccCCChhHH
Q 000120 1109 VALAKLALKNLLLT-NLD-LFPACIDQCYY-SDAAIADGYFSVLAEVYMRQEIPKCEIQRLL---SLILYKVVDPSRQIR 1182 (2151)
Q Consensus 1109 ~~lgr~AL~~LL~~-N~d-Ll~~~i~rCY~-~~~~va~~yF~vl~~v~~~~~~~~~~~~~LL---~L~L~~lg~~~~~IR 1182 (2151)
++..+..++.+..- .|. +++.+++ +.. .+.++..+|...+...+.+.... +...+ -.+.-.++|+|.+||
T Consensus 149 R~~~r~il~~l~~v~~~~~v~~~l~~-g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR 224 (266)
T 2of3_A 149 RTSVRDIVNVLSDVVGPLKMTPMLLD-ALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVR 224 (266)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHH
Confidence 46677777766653 555 7777777 555 46678899999999999877554 44445 667788999999999
Q ss_pred HHHHHHHHHHhh
Q 000120 1183 DDALQMLETLSV 1194 (2151)
Q Consensus 1183 ~~A~~LL~~L~~ 1194 (2151)
++|++-+..+..
T Consensus 225 ~aAl~~lve~y~ 236 (266)
T 2of3_A 225 NAAINVLVACFK 236 (266)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 17
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=21.64 E-value=4.1e+02 Score=33.76 Aligned_cols=117 Identities=20% Similarity=0.168 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHh-CCCChHHHHHHHHhcccccchhhHHHhHHHhhhhhcccccchHHHHHHHHHHhcCChHHHHH
Q 000120 1922 YQKACSVASNIALWCRA-KSLDELGTVFVAYSRGEIKSIDNLLACVSPLLWNEWFPKHSALAFGHLLRLLEKGPVEYQRV 2000 (2151)
Q Consensus 1922 ~~~~~~~A~~la~~~~~-~~~~~La~vl~~ya~~~f~~~~dfl~~~~~~l~~~~fp~~~~~~l~~L~~lL~~~~~~~~~~ 2000 (2151)
++...+..+.|+..-+. .+...--+.+-.-+||. ...+....|.++-.- .+||++..+++.-++-|.|-.-..++..
T Consensus 7 ie~LY~~~~~L~da~dk~~~~~~~y~~Il~~~kg~-~k~K~LaaQ~I~kff-k~FP~l~~~Ai~a~lDLcEDed~~IR~q 84 (507)
T 3u0r_A 7 VEELYRNYGILADATEQVGQHKDAYQVILDGVKGG-TKEKRLAAQFIPKFF-KHFPELADSAINAQLDLCEDEDVSIRRQ 84 (507)
T ss_dssp HHHHHHHHHHHHHTGGGGGGGHHHHHHHHHGGGSC-HHHHHHHHHHHHHHG-GGCGGGHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHhhHhhhccccccccHHHHHHHHHhcCCC-HHHHHHHHHHHHHHH-hhChhhHHHHHHHHHHHHhcccHHHHHH
Confidence 34444555545444433 22333334444456664 334677777544332 4699999999999999999877777665
Q ss_pred HHHHHHHhhcCCCCCCCCchhhHHHHHHHhcCcCHHHHHHHHHHH
Q 000120 2001 ILLMLKALLQHTPMDASQSPHMYAIVSQLVESTLCWEALSVLEAL 2045 (2151)
Q Consensus 2001 ~l~iL~~ll~~~~~~~~~~~~l~~~l~rll~t~~~~eAL~VL~~v 2045 (2151)
..+=|-.+-.. -+.+.+..+|.+||||+--.|..-|=...
T Consensus 85 aik~Lp~~ck~-----~~i~kiaDvL~QlLqtdd~~E~~~V~~sL 124 (507)
T 3u0r_A 85 AIKELPQFATG-----ENLPRVADILTQLLQTDDSAEFNLVNNAL 124 (507)
T ss_dssp HHHHGGGGCCT-----TCHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHhhHHHhhh-----hhhhhHHHHHHHHHhccchHHHHHHHHHH
Confidence 44444444332 44777888999999999887766554443
Done!