BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000121
         (2150 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K04|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
           Of Focal Adhesion Kinase
 pdb|1K05|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
           Of Focal Adhesion Kinase
 pdb|1K05|B Chain B, Crystal Structure Of The Focal Adhesion Targeting Domain
           Of Focal Adhesion Kinase
 pdb|1K05|C Chain C, Crystal Structure Of The Focal Adhesion Targeting Domain
           Of Focal Adhesion Kinase
 pdb|3B71|A Chain A, Cd4 Endocytosis Motif Bound To The Focal Adhesion
           Targeting (Fat) Domain Of The Focal Adhesion Kinase
 pdb|3B71|B Chain B, Cd4 Endocytosis Motif Bound To The Focal Adhesion
           Targeting (Fat) Domain Of The Focal Adhesion Kinase
 pdb|3B71|C Chain C, Cd4 Endocytosis Motif Bound To The Focal Adhesion
           Targeting (Fat) Domain Of The Focal Adhesion Kinase
          Length = 162

 Score = 32.3 bits (72), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 421 IGLRALLAIV-----MSPTSQHVGLEI---FTGHDIGHYIPKVKAAIESILRSCHRTYSQ 472
           + LR LLA V     + P S H  +E+       D+G  I K+K A + ++ S  + Y +
Sbjct: 69  LALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQQYVMTSLQQEYKK 128

Query: 473 ALLTSSRT-TIDA 484
            +LT++    +DA
Sbjct: 129 QMLTAAHALAVDA 141


>pdb|1OW6|A Chain A, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
           (Fat) Domain Of The Focal Adhesion Kinase
 pdb|1OW6|B Chain B, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
           (Fat) Domain Of The Focal Adhesion Kinase
 pdb|1OW6|C Chain C, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
           (Fat) Domain Of The Focal Adhesion Kinase
 pdb|1OW7|A Chain A, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
           (Fat) Domain Of The Focal Adhesion Kinase
 pdb|1OW7|B Chain B, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
           (Fat) Domain Of The Focal Adhesion Kinase
 pdb|1OW7|C Chain C, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
           (Fat) Domain Of The Focal Adhesion Kinase
 pdb|1OW8|A Chain A, Paxillin Ld2 Motif Bound To The Focal Adhesion Targeting
           (Fat) Domain Of The Focal Adhesion Kinase
 pdb|1OW8|B Chain B, Paxillin Ld2 Motif Bound To The Focal Adhesion Targeting
           (Fat) Domain Of The Focal Adhesion Kinase
 pdb|1OW8|C Chain C, Paxillin Ld2 Motif Bound To The Focal Adhesion Targeting
           (Fat) Domain Of The Focal Adhesion Kinase
          Length = 161

 Score = 32.3 bits (72), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 421 IGLRALLAIV-----MSPTSQHVGLEI---FTGHDIGHYIPKVKAAIESILRSCHRTYSQ 472
           + LR LLA V     + P S H  +E+       D+G  I K+K A + ++ S  + Y +
Sbjct: 68  LALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQQYVMTSLQQEYKK 127

Query: 473 ALLTSSRT-TIDA 484
            +LT++    +DA
Sbjct: 128 QMLTAAHALAVDA 140


>pdb|3S9O|A Chain A, The Focal Adhesion Targeting (Fat) Domain Of The Focal
           Adhesion Kinase Showing N-Terminal Interactions In Cis
 pdb|3S9O|B Chain B, The Focal Adhesion Targeting (Fat) Domain Of The Focal
           Adhesion Kinase Showing N-Terminal Interactions In Cis
 pdb|3S9O|C Chain C, The Focal Adhesion Targeting (Fat) Domain Of The Focal
           Adhesion Kinase Showing N-Terminal Interactions In Cis
          Length = 164

 Score = 32.3 bits (72), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 421 IGLRALLAIV-----MSPTSQHVGLEI---FTGHDIGHYIPKVKAAIESILRSCHRTYSQ 472
           + LR LLA V     + P S H  +E+       D+G  I K+K A + ++ S  + Y +
Sbjct: 71  LALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQQYVMTSLQQEYKK 130

Query: 473 ALLTSSRT-TIDA 484
            +LT++    +DA
Sbjct: 131 QMLTAAHALAVDA 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,620,524
Number of Sequences: 62578
Number of extensions: 2445676
Number of successful extensions: 5004
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5003
Number of HSP's gapped (non-prelim): 6
length of query: 2150
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2036
effective length of database: 7,839,445
effective search space: 15961110020
effective search space used: 15961110020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)