BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000124
(2138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 84/214 (39%), Gaps = 17/214 (7%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186
+ L+ LL S ++T+K AA L E++SG S +K V G V L L
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPAS----AIKAIVDAGGVEVLVKLLTS---T 56
Query: 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGXXXXXXXXXXXXXXXXXXRLMLA 246
D+ VQ AL N+ D +A ++AGGV+++V +
Sbjct: 57 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 116
Query: 247 FGDSIPTVIDSGAVKALVQLVGQNNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVPVL 306
++I ++D+G V+ LV+L+ + D GV VL
Sbjct: 117 PDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVL 175
Query: 307 IGAIVAPSKECMQGQRGQALQGHATRALANIYGG 340
+ + + E +Q A RALANI G
Sbjct: 176 VKLLTSTDSE---------VQKEAARALANIASG 200
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 40/202 (19%)
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLW-ILCCHSEDIRACVESAGAVPAFLWLLKS 569
AI AGG+ LV+LL + + ++ AA L I E I+A V+ AG V + LL S
Sbjct: 39 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTS 97
Query: 570 GGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLV 629
+ Q +A AL + D A IK + V
Sbjct: 98 TDSEVQKEAARALANIASGPDEA--------------------IKAI------------V 125
Query: 630 QKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT 689
G G+ LV++L S++ E Q+ AA LA++ S + ++ V ++LLT
Sbjct: 126 DAG-----GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 690 SNTQMVATQSARALGAL-SRPT 710
S V ++ARAL + S PT
Sbjct: 181 STDSEVQKEAARALANIASGPT 202
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 6/157 (3%)
Query: 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697
G+ LV++L S++ E Q+ AA LA++ S + ++ V ++LLTS V
Sbjct: 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQK 104
Query: 698 QSARALGAL-SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDXXXXXXXXXXXXXSDPD 756
++ARAL + S P + + + G V+ L+KL ++ + S PD
Sbjct: 105 EAARALANIASGPDEA----IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160
Query: 757 IAAEVLLE-DVVSALTRVLAEGTSEGKKNASRALHQL 792
A + +++ V L ++L SE +K A+RAL +
Sbjct: 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 1515 VEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAI 1574
VE L +L D Q A + L I P S + + + +E L+ L S +
Sbjct: 4 VEKLVKLLTSTDSET--QKEAARDLAEIASGPASAIK-AIVDAGGVEVLVKLLTSTDSEV 60
Query: 1575 QQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWP-- 1631
Q+ L ++ + + + I V LV+L +Q+ A +AL I+ S P
Sbjct: 61 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA-SGPDE 119
Query: 1632 --KAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKV----PVVVL 1685
KA+ DAGG+ + K++ D + + + AA L+N+ E + V VL
Sbjct: 120 AIKAIVDAGGVEVLVKLLTSTDSE----VQKEAARALANIASGPDEAIKAIVDAGGVEVL 175
Query: 1686 VKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCE--ETSGRL 1743
VK+L ST A AL S+ + + AG ++ L LL S E + + R
Sbjct: 176 VKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235
Query: 1744 LEALFNNG 1751
LE + + G
Sbjct: 236 LENIKSGG 243
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 82 HAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLL-GGCIPPLLSLLKSESTD 140
A + + + +L S + A L+ + D +K ++ G + L+ LL S ++
Sbjct: 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE 143
Query: 141 TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200
+K AA AL ++SG D+ + K V G V L L D+ VQ AL N
Sbjct: 144 VQKEAARALANIASG--PDEAI--KAIVDAGGVEVLVKLLTS---TDSEVQKEAARALAN 196
Query: 201 LCGDKDGYWRATLEAGGVDII 221
+ +A ++AGGV+++
Sbjct: 197 IASGPTSAIKAIVDAGGVEVL 217
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 8/188 (4%)
Query: 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLL-GGCIPPLLSLLKSESTDTRKA 144
+P L S +++ S + D + +++ ++ G +P L+ LL S + +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 145 AAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204
A AL ++SGG + ++ + G +P L L+ N+Q ++Q + AL N+
Sbjct: 74 ALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSPNEQ--ILQEALW-ALSNIASG 126
Query: 205 KDGYWRATLEAGGVDIIVGXXXXXXXXXXXXXXXXXXRLMLAFGDSIPTVIDSGAVKALV 264
+ +A ++AG + +V + + I VID+GA+ ALV
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 186
Query: 265 QLVGQNND 272
QL+ N+
Sbjct: 187 QLLSSPNE 194
Score = 33.9 bits (76), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 7/149 (4%)
Query: 124 GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183
G +P + L S+ + +A ++ LSD + ++ + G +P L L+
Sbjct: 11 GSELPQMTQQLNSDDMQEQLSATRKFSQI----LSDGNEQIQAVIDAGALPALVQLLSSP 66
Query: 184 NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGXXXXXXXXXXXXXXXXXXRL 243
N+Q ++Q + AL N+ + +A ++AG + +V +
Sbjct: 67 NEQ--ILQEALW-ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 244 MLAFGDSIPTVIDSGAVKALVQLVGQNND 272
+ I VID+GA+ ALVQL+ N+
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNE 152
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLW----ILCCHSEDIRACVESAGAVPAFLWL 566
A+ AG +P LVQLL S ++ LW I +E I+A ++ AGA+PA + L
Sbjct: 49 AVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQL 104
Query: 567 LKS 569
L S
Sbjct: 105 LSS 107
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 84 QAMPLFISILRSGTPLA-KVNVAATLS-VLCKDEDLRLKVLLGGCIPPLLSLLKSESTDT 141
QA+P +S+L + K T+S + ++D V+ G I PL++LL++ D
Sbjct: 328 QALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDI 387
Query: 142 RKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180
+K AA A+ +SGG H +K V+EG + L D L
Sbjct: 388 KKEAAWAISNATSGG---SHDQIKYLVSEGCIKPLCDLL 423
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 84 QAMPLFISILRSGTPLA-KVNVAATLS-VLCKDEDLRLKVLLGGCIPPLLSLLKSESTDT 141
QA+P +S+L + K T+S + ++D V+ G I PL++LL++ D
Sbjct: 290 QALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDI 349
Query: 142 RKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180
+K AA A+ +SGG H +K V+EG + L D L
Sbjct: 350 KKEAAWAISNATSGG---SHDQIKYLVSEGCIKPLCDLL 385
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 124 GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183
G +P ++ L S ++A L +++SGG + ++ + G +P L L+
Sbjct: 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGG----NEQIQAVIDAGALPALVQLLSSP 66
Query: 184 NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGXXXXXXXXXXXXXXXXXXRL 243
N+Q ++Q + AL N+ + +A ++AG + +V +
Sbjct: 67 NEQ--ILQEALW-ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 244 MLAFGDSIPTVIDSGAVKALVQLVGQNND 272
+ I VID+GA+ ALVQL+ N+
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNE 152
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLW----ILCCHSEDIRACVESAGAVPAFLWL 566
A+ AG +P LVQLL S ++ LW I +E I+A ++ AGA+PA + L
Sbjct: 49 AVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQL 104
Query: 567 LKS 569
L S
Sbjct: 105 LSS 107
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
A+ AG +P LVQLL + +++ + A L + + + V+ AGA PA L S
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSP 192
Query: 571 GPKGQDASAMALTKL 585
K Q + AL K+
Sbjct: 193 NEKIQKEAQEALEKI 207
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180
V+ IPPL+ LL+ T+K A A+ SSGGL + ++ V++G + L D L
Sbjct: 293 VIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDI-IRYLVSQGCIKPLCDLL 351
Query: 181 NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220
DN + AL N+ K G A EA G++I
Sbjct: 352 EIA---DNRIIEVTLDALENIL--KMG--EADKEARGLNI 384
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180
V+ IPPL+ LL+ T+K A A+ SSGGL + ++ V++G + L D L
Sbjct: 291 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDI-IRYLVSQGCIKPLCDLL 349
Query: 181 NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220
DN + AL N+ K G A EA G++I
Sbjct: 350 EIA---DNRIIEVTLDALENII--KMG--EADKEARGLNI 382
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180
V+ IPPL+ LL+ T+K A A+ SSGGL + ++ V++G + L D L
Sbjct: 291 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDI-IRYLVSQGCIKPLCDLL 349
Query: 181 NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220
DN + AL N+ K G A EA G++I
Sbjct: 350 EIA---DNRIIEVTLDALENIL--KMG--EADKEARGLNI 382
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 124 GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183
G +P ++ L S ++A L +++SGG + ++ + G +P L L+
Sbjct: 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGG----NEQIQAVIDAGALPALVQLLSSP 66
Query: 184 NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGXXXXXXXXXXXXXXXXXXRL 243
N+Q ++Q + AL N+ + +A ++AG + +V +
Sbjct: 67 NEQ--ILQEALW-ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 244 MLAFGDSIPTVIDSGAVKALVQLVGQNND 272
+ I VID+GA+ ALVQL+ N+
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNE 152
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLW----ILCCHSEDIRACVESAGAVPAFLWL 566
A+ AG +P LVQLL S ++ LW I +E I+A ++ AGA+PA + L
Sbjct: 49 AVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQL 104
Query: 567 LKS 569
L S
Sbjct: 105 LSS 107
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180
V+ IPPL+ LL+ T+K A A+ SSGGL + ++ V++G + L D L
Sbjct: 293 VIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDI-IRYLVSQGCIKPLCDLL 351
Query: 181 NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220
DN + AL N+ K G A EA G++I
Sbjct: 352 EIA---DNRIIEVTLDALENIL--KMG--EADKEARGLNI 384
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180
V+ IPPL+ LL+ T+K A A+ SSGGL + ++ V++G + L D L
Sbjct: 292 VIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDI-IRYLVSQGCIKPLCDLL 350
Query: 181 NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220
DN + AL N+ K G A EA G++I
Sbjct: 351 EIA---DNRIIEVTLDALENIL--KMG--EADKEARGLNI 383
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180
V+ IPPL+ LL+ T+K A A+ SSGGL + ++ V++G + L D L
Sbjct: 292 VIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDI-IRYLVSQGCIKPLCDLL 350
Query: 181 NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220
DN + AL N+ K G A EA G++I
Sbjct: 351 EIA---DNRIIEVTLDALENIL--KMG--EADKEARGLNI 383
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180
V+ IPPL+ LL+ T+K A A+ SSGGL + ++ V++G + L D L
Sbjct: 379 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDI-IRYLVSQGCIKPLCDLL 437
Query: 181 NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220
DN + AL N+ K G A EA G++I
Sbjct: 438 EIA---DNRIIEVTLDALENIL--KMG--EADKEARGLNI 470
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 1 MQMSKSPSPEPQAHGFSSTSQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQEREL 60
++M S SPE Q + +D+ ST VA+F+E L + + E
Sbjct: 26 IEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE- 84
Query: 61 ITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-------GTPLAKVNVAATLSVLCK 113
+ +LT + + I A A+P+FI +L S A N+A S +C+
Sbjct: 85 -SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGD-STMCR 142
Query: 114 DEDLRLKVLLGGCIPPLLSLLKSES--TDTRKA 144
D L +L PPLL L ++ T TR A
Sbjct: 143 DYVLDCNIL-----PPLLQLFSKQNRLTMTRNA 170
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 1 MQMSKSPSPEPQAHGFSSTSQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQEREL 60
++M S SPE Q + +D+ ST VA+F+E L + + E
Sbjct: 23 IEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE- 81
Query: 61 ITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-------GTPLAKVNVAATLSVLCK 113
+ +LT + + I A A+P+FI +L S A N+A S +C+
Sbjct: 82 -SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGD-STMCR 139
Query: 114 DEDLRLKVLLGGCIPPLLSLLKSES--TDTRKA 144
D L +L PPLL L ++ T TR A
Sbjct: 140 DYVLDCNIL-----PPLLQLFSKQNRLTMTRNA 167
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLW----ILCCHSEDIRACVESAGAVPAFLWL 566
A+ AG +P LVQLL S ++ LW I +E I+A ++ AGA+PA + L
Sbjct: 49 AVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQL 104
Query: 567 LKS 569
L S
Sbjct: 105 LSS 107
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 7/149 (4%)
Query: 124 GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183
G +P + L S+ + +A ++ LSD + ++ + G +P L L+
Sbjct: 11 GSELPQMTQQLNSDDMQEQLSATRKFSQI----LSDGNEQIQAVIDAGALPALVQLLSSP 66
Query: 184 NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGXXXXXXXXXXXXXXXXXXRL 243
N+Q ++Q + AL N+ + +A ++AG + +V +
Sbjct: 67 NEQ--ILQEALW-ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 244 MLAFGDSIPTVIDSGAVKALVQLVGQNND 272
+ I VID+GA+ ALVQL+ N+
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNE 152
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha
(Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 1999 ERADSLLHCLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTI----GNGPPRQTKVVSHSI 2052
E AD LH VT++ NL G ++ + +L + N ++TK + ++
Sbjct: 14 EVADEKLH-------VTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTL 66
Query: 2053 SPEWKEGFTWAFDVPPKGQKLHI 2075
+P+W E FT+ K ++L +
Sbjct: 67 NPQWNESFTFKLKPSDKDRRLSV 89
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 723 EGDVKPLIKLAKTSSIDXXXXXXXXXXXXXSDPDIAAEVLLEDVVSALTRVLAEGTSEGK 782
EG L LAKT S + ++ +V+ E V AL R+ EGT +GK
Sbjct: 494 EGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGK 553
Query: 783 KNASRALHQL 792
++A++AL ++
Sbjct: 554 RHATQALARI 563
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+
And Phosphatidylserine
Length = 139
Score = 32.0 bits (71), Expect = 3.8, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTI----GNGPPRQTKVVSHSISPEWKEGFTWAFD 2065
L VT++ NL G ++ + +L + N ++TK + +++P+W E FT+
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 2066 VPPKGQKLHI 2075
K ++L +
Sbjct: 79 PSDKDRRLSV 88
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 32.0 bits (71), Expect = 4.1, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTI----GNGPPRQTKVVSHSISPEWKEGFTWAFD 2065
L VT++ NL G ++ + +L + N ++TK + +++P+W E FT+
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 2066 VPPKGQKLHI 2075
K ++L +
Sbjct: 78 PSDKDRRLSV 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,003,973
Number of Sequences: 62578
Number of extensions: 1950045
Number of successful extensions: 5012
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4740
Number of HSP's gapped (non-prelim): 288
length of query: 2138
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2024
effective length of database: 7,839,445
effective search space: 15867036680
effective search space used: 15867036680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)