Query 000124
Match_columns 2138
No_of_seqs 503 out of 3177
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 19:29:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 0E+00 0E+00 4428.7 186.3 2100 29-2132 3-2102(2102)
2 PLN03200 cellulose synthase-in 100.0 3E-166 6E-171 1682.7 113.8 1591 41-1758 60-1989(2102)
3 KOG0166 Karyopherin (importin) 100.0 2.2E-27 4.8E-32 293.1 33.4 414 434-892 68-488 (514)
4 KOG4224 Armadillo repeat prote 100.0 3.4E-27 7.3E-32 271.9 24.1 432 430-916 83-518 (550)
5 COG5064 SRP1 Karyopherin (impo 99.9 2.5E-26 5.3E-31 262.9 26.3 416 435-892 74-498 (526)
6 KOG0166 Karyopherin (importin) 99.9 1.7E-25 3.7E-30 276.6 33.6 396 393-795 69-487 (514)
7 KOG4224 Armadillo repeat prote 99.9 5E-26 1.1E-30 262.3 25.2 394 390-796 86-495 (550)
8 COG5064 SRP1 Karyopherin (impo 99.9 2.5E-23 5.5E-28 238.4 23.6 398 393-795 74-497 (526)
9 PF05804 KAP: Kinesin-associat 99.8 3.7E-17 8E-22 213.0 44.7 373 407-796 265-651 (708)
10 PF05804 KAP: Kinesin-associat 99.8 1.1E-16 2.3E-21 208.7 47.7 522 36-675 120-658 (708)
11 cd08391 C2A_C2C_Synaptotagmin_ 99.7 9.7E-17 2.1E-21 168.3 10.3 113 2010-2129 1-121 (121)
12 cd04016 C2_Tollip C2 domain pr 99.7 1.3E-16 2.8E-21 168.3 11.2 101 2010-2113 2-106 (121)
13 KOG1048 Neural adherens juncti 99.7 3.3E-15 7.1E-20 190.6 23.8 420 126-589 234-686 (717)
14 cd08681 C2_fungal_Inn1p-like C 99.7 2.5E-16 5.4E-21 165.0 10.2 115 2010-2129 1-118 (118)
15 cd04036 C2_cPLA2 C2 domain pre 99.7 4.1E-16 8.9E-21 163.8 11.3 112 2011-2128 1-116 (119)
16 KOG1048 Neural adherens juncti 99.6 9.1E-15 2E-19 186.6 24.2 378 434-841 235-684 (717)
17 cd08394 C2A_Munc13 C2 domain f 99.6 4.6E-16 9.9E-21 163.7 8.7 106 2010-2120 2-110 (127)
18 cd04024 C2A_Synaptotagmin-like 99.6 1.1E-15 2.3E-20 162.1 11.1 118 2010-2129 1-128 (128)
19 cd08678 C2_C21orf25-like C2 do 99.6 1.2E-15 2.5E-20 162.2 11.0 119 2012-2132 1-122 (126)
20 cd08379 C2D_MCTP_PRT_plant C2 99.6 1.5E-15 3.3E-20 161.2 10.2 99 2012-2113 2-112 (126)
21 cd04050 C2B_Synaptotagmin-like 99.6 1.3E-15 2.9E-20 156.6 9.3 99 2011-2113 1-103 (105)
22 cd08682 C2_Rab11-FIP_classI C2 99.6 2.1E-15 4.5E-20 160.2 10.1 115 2012-2127 1-125 (126)
23 cd04042 C2A_MCTP_PRT C2 domain 99.6 3.4E-15 7.4E-20 157.3 11.2 117 2012-2131 2-121 (121)
24 cd08378 C2B_MCTP_PRT_plant C2 99.6 4.5E-15 9.8E-20 156.8 11.5 112 2012-2128 2-118 (121)
25 cd08376 C2B_MCTP_PRT C2 domain 99.6 4.4E-15 9.5E-20 155.1 9.7 112 2011-2130 1-115 (116)
26 KOG1030 Predicted Ca2+-depende 99.6 2.7E-15 5.8E-20 162.0 7.9 93 2009-2104 5-100 (168)
27 cd04028 C2B_RIM1alpha C2 domai 99.6 6.6E-15 1.4E-19 159.9 10.9 107 2008-2116 27-142 (146)
28 cd08400 C2_Ras_p21A1 C2 domain 99.6 9.1E-15 2E-19 155.5 11.4 118 2011-2131 5-124 (126)
29 cd08373 C2A_Ferlin C2 domain f 99.6 8.6E-15 1.9E-19 155.6 10.9 115 2016-2132 2-118 (127)
30 cd04044 C2A_Tricalbin-like C2 99.6 8.6E-15 1.9E-19 154.2 10.8 117 2010-2131 2-124 (124)
31 KOG4199 Uncharacterized conser 99.6 3.9E-12 8.3E-17 148.0 32.0 364 59-553 77-452 (461)
32 cd08685 C2_RGS-like C2 domain 99.6 4.6E-15 9.9E-20 156.3 7.4 101 2009-2110 11-119 (119)
33 cd08381 C2B_PI3K_class_II C2 d 99.6 8.3E-15 1.8E-19 155.0 9.0 101 2009-2110 12-121 (122)
34 cd08375 C2_Intersectin C2 doma 99.5 1.5E-14 3.2E-19 155.9 10.1 108 2010-2121 15-130 (136)
35 cd04025 C2B_RasA1_RasA4 C2 dom 99.5 1.8E-14 4E-19 152.2 10.1 114 2012-2127 2-122 (123)
36 cd08382 C2_Smurf-like C2 domai 99.5 2.8E-14 6E-19 151.1 10.5 113 2012-2127 2-122 (123)
37 cd04032 C2_Perforin C2 domain 99.5 3.1E-14 6.7E-19 151.4 10.7 97 2010-2111 28-126 (127)
38 KOG2122 Beta-catenin-binding p 99.5 9.9E-13 2.1E-17 171.3 26.2 372 175-669 201-604 (2195)
39 cd04022 C2A_MCTP_PRT_plant C2 99.5 2.3E-14 4.9E-19 152.4 9.6 115 2012-2127 2-123 (127)
40 cd04015 C2_plant_PLD C2 domain 99.5 3.2E-14 7E-19 157.1 11.1 120 2008-2129 5-157 (158)
41 cd04010 C2B_RasA3 C2 domain se 99.5 3.7E-14 7.9E-19 154.8 10.9 106 2012-2117 2-127 (148)
42 cd04052 C2B_Tricalbin-like C2 99.5 1.7E-14 3.7E-19 150.0 7.4 103 2023-2131 7-110 (111)
43 KOG2122 Beta-catenin-binding p 99.5 6.8E-13 1.5E-17 172.7 23.2 364 394-798 201-605 (2195)
44 cd04030 C2C_KIAA1228 C2 domain 99.5 2.3E-14 4.9E-19 152.0 7.6 107 2004-2110 8-126 (127)
45 cd04045 C2C_Tricalbin-like C2 99.5 3.6E-14 7.8E-19 149.7 8.9 105 2010-2119 1-108 (120)
46 cd04029 C2A_SLP-4_5 C2 domain 99.5 3.4E-14 7.3E-19 151.0 8.5 102 2009-2110 14-124 (125)
47 cd08688 C2_KIAA0528-like C2 do 99.5 3.1E-14 6.8E-19 147.8 8.0 101 2012-2113 1-110 (110)
48 cd04019 C2C_MCTP_PRT_plant C2 99.5 8.1E-14 1.8E-18 152.6 11.0 118 2011-2130 1-132 (150)
49 cd04046 C2_Calpain C2 domain p 99.5 1.4E-13 2.9E-18 146.5 12.3 114 2010-2128 3-120 (126)
50 cd08392 C2A_SLP-3 C2 domain fi 99.5 5.1E-14 1.1E-18 150.3 8.4 103 2009-2111 14-128 (128)
51 cd08401 C2A_RasA2_RasA3 C2 dom 99.5 1.1E-13 2.4E-18 146.3 10.6 113 2012-2126 2-118 (121)
52 cd08393 C2A_SLP-1_2 C2 domain 99.5 6.9E-14 1.5E-18 148.6 9.0 103 2009-2111 14-125 (125)
53 cd04038 C2_ArfGAP C2 domain pr 99.5 7.7E-14 1.7E-18 151.8 9.3 109 2010-2132 2-113 (145)
54 PRK09687 putative lyase; Provi 99.5 1.2E-12 2.6E-17 157.2 20.0 251 475-791 24-279 (280)
55 cd08377 C2C_MCTP_PRT C2 domain 99.5 1.7E-13 3.8E-18 143.5 11.1 114 2010-2128 1-117 (119)
56 cd04039 C2_PSD C2 domain prese 99.5 1.1E-13 2.4E-18 143.5 8.5 90 2010-2100 1-97 (108)
57 cd04014 C2_PKC_epsilon C2 doma 99.5 1.9E-13 4E-18 146.4 10.5 114 2008-2131 2-130 (132)
58 cd04041 C2A_fungal C2 domain f 99.5 1.1E-13 2.4E-18 143.9 8.3 93 2010-2103 1-102 (111)
59 cd08387 C2A_Synaptotagmin-8 C2 99.5 1.2E-13 2.6E-18 146.2 8.6 103 2009-2111 15-123 (124)
60 cd04011 C2B_Ferlin C2 domain s 99.4 1.5E-13 3.3E-18 142.8 8.5 98 2012-2112 6-110 (111)
61 cd04049 C2_putative_Elicitor-r 99.4 1.8E-13 3.9E-18 144.8 8.9 103 2010-2113 1-109 (124)
62 cd04033 C2_NEDD4_NEDD4L C2 dom 99.4 2.8E-13 6E-18 145.0 10.0 115 2011-2128 1-131 (133)
63 cd04027 C2B_Munc13 C2 domain s 99.4 3.2E-13 7E-18 143.8 10.3 110 2011-2125 2-125 (127)
64 cd08385 C2A_Synaptotagmin-1-5- 99.4 2.1E-13 4.5E-18 144.3 8.4 103 2009-2111 15-123 (124)
65 PRK09687 putative lyase; Provi 99.4 4.3E-12 9.3E-17 152.4 20.5 254 515-837 22-278 (280)
66 KOG4199 Uncharacterized conser 99.4 4.2E-11 9.2E-16 139.5 27.3 326 167-588 100-445 (461)
67 cd08521 C2A_SLP C2 domain firs 99.4 2.8E-13 6E-18 142.8 8.6 102 2009-2110 13-123 (123)
68 cd04054 C2A_Rasal1_RasA4 C2 do 99.4 4.8E-13 1E-17 141.3 10.3 114 2011-2127 1-119 (121)
69 KOG4500 Rho/Rac GTPase guanine 99.4 1.1E-10 2.4E-15 139.3 30.4 427 407-841 58-519 (604)
70 cd08675 C2B_RasGAP C2 domain s 99.4 4.7E-13 1E-17 144.5 9.8 102 2012-2113 1-121 (137)
71 cd08386 C2A_Synaptotagmin-7 C2 99.4 3.8E-13 8.3E-18 142.4 8.9 103 2010-2112 16-125 (125)
72 cd04031 C2A_RIM1alpha C2 domai 99.4 4.8E-13 1E-17 141.4 9.5 101 2009-2110 15-124 (125)
73 cd08395 C2C_Munc13 C2 domain t 99.4 4.7E-13 1E-17 141.1 9.1 100 2012-2113 2-113 (120)
74 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.4 4.7E-13 1E-17 148.5 8.7 105 2009-2113 26-139 (162)
75 PRK13800 putative oxidoreducta 99.4 3.5E-11 7.7E-16 165.5 28.8 275 432-790 621-895 (897)
76 cd08690 C2_Freud-1 C2 domain f 99.4 1.9E-12 4.1E-17 141.9 12.3 123 2010-2134 4-141 (155)
77 cd08384 C2B_Rabphilin_Doc2 C2 99.4 4.1E-13 8.9E-18 143.8 6.8 104 2008-2113 11-122 (133)
78 cd04026 C2_PKC_alpha_gamma C2 99.4 9.8E-13 2.1E-17 140.6 9.4 111 2006-2119 9-126 (131)
79 cd08691 C2_NEDL1-like C2 domai 99.4 1.3E-12 2.8E-17 140.9 10.3 100 2011-2113 2-122 (137)
80 KOG4500 Rho/Rac GTPase guanine 99.4 2.9E-10 6.2E-15 135.9 30.4 433 444-894 54-523 (604)
81 KOG2171 Karyopherin (importin) 99.4 1.9E-07 4E-12 124.3 59.0 817 51-957 128-1067(1075)
82 cd04018 C2C_Ferlin C2 domain t 99.4 7.6E-13 1.7E-17 144.8 7.9 91 2012-2103 2-109 (151)
83 cd04043 C2_Munc13_fungal C2 do 99.4 2.5E-12 5.5E-17 136.3 11.3 114 2011-2132 2-123 (126)
84 cd08390 C2A_Synaptotagmin-15-1 99.4 1.2E-12 2.5E-17 138.2 8.5 104 2009-2112 13-123 (123)
85 PRK13800 putative oxidoreducta 99.4 5.8E-11 1.3E-15 163.4 26.8 277 473-838 620-896 (897)
86 cd08405 C2B_Synaptotagmin-7 C2 99.3 8.2E-13 1.8E-17 142.2 6.5 103 2009-2113 14-124 (136)
87 cd08383 C2A_RasGAP C2 domain ( 99.3 3.7E-12 7.9E-17 133.1 11.0 113 2012-2128 2-116 (117)
88 cd04040 C2D_Tricalbin-like C2 99.3 3.7E-12 8E-17 132.8 10.5 101 2012-2113 1-104 (115)
89 cd08676 C2A_Munc13-like C2 dom 99.3 2.3E-12 4.9E-17 141.4 9.0 97 2009-2110 27-153 (153)
90 cd04021 C2_E3_ubiquitin_ligase 99.3 3.5E-12 7.6E-17 135.6 9.6 113 2011-2127 3-124 (125)
91 KOG2171 Karyopherin (importin) 99.3 5.5E-07 1.2E-11 119.9 59.1 745 85-892 5-916 (1075)
92 cd08388 C2A_Synaptotagmin-4-11 99.3 3.1E-12 6.8E-17 136.6 8.8 99 2009-2107 15-123 (128)
93 PF10508 Proteasom_PSMB: Prote 99.3 9.4E-09 2E-13 133.5 42.3 437 41-585 5-463 (503)
94 cd04051 C2_SRC2_like C2 domain 99.3 3.7E-12 8E-17 135.0 9.1 103 2011-2113 1-115 (125)
95 cd08677 C2A_Synaptotagmin-13 C 99.3 2.3E-12 5E-17 134.8 7.2 89 2009-2101 13-109 (118)
96 cd08389 C2A_Synaptotagmin-14_1 99.3 4.1E-12 8.8E-17 135.0 8.6 102 2010-2112 16-124 (124)
97 cd04009 C2B_Munc13-like C2 dom 99.3 4.2E-12 9.2E-17 136.3 8.8 93 2010-2102 16-120 (133)
98 cd08402 C2B_Synaptotagmin-1 C2 99.3 2.4E-12 5.3E-17 138.6 6.9 103 2009-2113 14-124 (136)
99 cd08686 C2_ABR C2 domain in th 99.3 5.6E-12 1.2E-16 131.5 8.3 80 2012-2097 1-92 (118)
100 cd08680 C2_Kibra C2 domain fou 99.3 4.9E-12 1.1E-16 134.4 7.9 101 2010-2110 14-124 (124)
101 cd00276 C2B_Synaptotagmin C2 d 99.3 2.9E-12 6.2E-17 137.0 6.0 102 2010-2113 14-123 (134)
102 cd04037 C2E_Ferlin C2 domain f 99.3 7.9E-12 1.7E-16 132.8 9.3 89 2011-2100 1-93 (124)
103 cd08410 C2B_Synaptotagmin-17 C 99.3 5.3E-12 1.1E-16 136.0 6.6 104 2009-2113 13-124 (135)
104 cd08403 C2B_Synaptotagmin-3-5- 99.3 6.2E-12 1.4E-16 135.1 6.6 102 2010-2113 14-123 (134)
105 cd04048 C2A_Copine C2 domain f 99.2 1.3E-11 2.9E-16 130.0 8.3 99 2014-2113 4-115 (120)
106 PF10508 Proteasom_PSMB: Prote 99.2 3E-08 6.4E-13 128.9 40.8 389 394-791 42-462 (503)
107 cd08406 C2B_Synaptotagmin-12 C 99.2 7.9E-12 1.7E-16 134.9 6.6 107 2005-2113 8-124 (136)
108 cd04035 C2A_Rabphilin_Doc2 C2 99.2 1.4E-11 2.9E-16 130.4 8.3 95 2009-2103 14-116 (123)
109 PF01602 Adaptin_N: Adaptin N 99.2 1E-07 2.2E-12 124.4 46.1 504 88-751 8-522 (526)
110 cd08409 C2B_Synaptotagmin-15 C 99.2 6.7E-12 1.5E-16 135.6 6.0 103 2010-2113 15-125 (137)
111 cd08404 C2B_Synaptotagmin-4 C2 99.2 9.3E-12 2E-16 134.1 7.0 103 2009-2113 14-124 (136)
112 PF01602 Adaptin_N: Adaptin N 99.2 2.6E-08 5.6E-13 130.0 40.0 360 392-792 154-522 (526)
113 cd04017 C2D_Ferlin C2 domain f 99.2 3.6E-11 7.7E-16 129.6 10.5 101 2012-2113 3-118 (135)
114 KOG1293 Proteins containing ar 99.2 1.9E-08 4E-13 126.8 33.6 490 53-588 21-534 (678)
115 PLN03008 Phospholipase D delta 99.2 6.1E-11 1.3E-15 154.2 11.0 104 2027-2132 75-179 (868)
116 cd00275 C2_PLC_like C2 domain 99.2 1.5E-10 3.2E-15 122.8 11.5 114 2011-2128 3-126 (128)
117 cd04047 C2B_Copine C2 domain s 99.1 5.3E-11 1.2E-15 123.3 7.2 86 2013-2099 3-99 (110)
118 KOG1293 Proteins containing ar 99.1 4.5E-08 9.8E-13 123.5 33.6 497 94-677 19-544 (678)
119 KOG1222 Kinesin associated pro 99.1 1E-08 2.2E-13 123.6 26.7 380 100-508 279-668 (791)
120 cd04013 C2_SynGAP_like C2 doma 99.1 1.9E-10 4.1E-15 125.2 10.2 115 2011-2131 12-140 (146)
121 cd08407 C2B_Synaptotagmin-13 C 99.1 7E-11 1.5E-15 127.7 6.4 103 2009-2113 14-126 (138)
122 cd08408 C2B_Synaptotagmin-14_1 99.1 7.7E-11 1.7E-15 127.6 6.4 104 2009-2113 14-126 (138)
123 KOG2023 Nuclear transport rece 99.1 2.8E-07 6.1E-12 115.5 36.8 657 84-841 10-817 (885)
124 KOG1824 TATA-binding protein-i 99.1 1.3E-05 2.8E-10 104.2 52.0 490 402-960 581-1095(1233)
125 PF00168 C2: C2 domain; Inter 99.1 1E-10 2.3E-15 113.8 4.9 80 2012-2092 1-85 (85)
126 KOG1222 Kinesin associated pro 99.0 3.1E-07 6.7E-12 111.2 30.9 372 407-796 279-665 (791)
127 cd08692 C2B_Tac2-N C2 domain s 98.9 1.3E-09 2.9E-14 116.8 7.6 104 2008-2113 12-124 (135)
128 smart00239 C2 Protein kinase C 98.9 2.3E-09 4.9E-14 106.7 8.5 92 2011-2103 1-97 (101)
129 KOG1824 TATA-binding protein-i 98.9 0.00018 3.9E-09 94.0 53.4 736 84-892 47-888 (1233)
130 PF04826 Arm_2: Armadillo-like 98.9 5.3E-08 1.1E-12 115.5 18.9 194 634-841 9-205 (254)
131 PF04826 Arm_2: Armadillo-like 98.9 1.1E-07 2.3E-12 112.9 20.9 195 386-588 9-206 (254)
132 KOG0696 Serine/threonine prote 98.9 1.5E-09 3.2E-14 129.2 4.6 106 2007-2113 177-289 (683)
133 KOG1241 Karyopherin (importin) 98.8 4.4E-05 9.4E-10 98.2 43.7 655 52-841 12-711 (859)
134 PTZ00429 beta-adaptin; Provisi 98.8 8.1E-06 1.8E-10 109.5 39.3 470 393-927 35-538 (746)
135 KOG2023 Nuclear transport rece 98.8 5.5E-06 1.2E-10 104.3 34.8 619 125-798 128-821 (885)
136 PTZ00429 beta-adaptin; Provisi 98.8 5.1E-05 1.1E-09 102.0 46.6 503 170-789 31-541 (746)
137 cd00030 C2 C2 domain. The C2 d 98.8 8.7E-09 1.9E-13 101.7 8.3 98 2012-2110 1-102 (102)
138 cd00020 ARM Armadillo/beta-cat 98.8 5.8E-08 1.3E-12 100.5 13.5 118 674-794 2-120 (120)
139 cd00020 ARM Armadillo/beta-cat 98.8 4.6E-08 1E-12 101.2 12.8 117 470-586 3-119 (120)
140 KOG0213 Splicing factor 3b, su 98.8 5.2E-05 1.1E-09 96.3 41.1 605 83-792 506-1140(1172)
141 COG5215 KAP95 Karyopherin (imp 98.8 0.00085 1.9E-08 84.0 49.3 364 432-841 321-711 (858)
142 KOG0168 Putative ubiquitin fus 98.7 1.2E-06 2.5E-11 112.6 25.0 262 36-312 164-437 (1051)
143 KOG0213 Splicing factor 3b, su 98.7 9.8E-05 2.1E-09 93.9 38.7 272 517-819 800-1083(1172)
144 KOG1241 Karyopherin (importin) 98.7 0.0011 2.3E-08 86.0 48.0 499 218-797 4-533 (859)
145 KOG1789 Endocytosis protein RM 98.6 0.00044 9.4E-09 90.2 41.4 617 171-821 1375-2141(2235)
146 KOG0946 ER-Golgi vesicle-tethe 98.6 0.00091 2E-08 86.6 43.6 268 35-314 18-328 (970)
147 KOG4151 Myosin assembly protei 98.5 1.7E-05 3.6E-10 103.3 25.9 360 542-949 376-743 (748)
148 KOG1028 Ca2+-dependent phospho 98.5 4E-07 8.7E-12 115.4 11.2 125 2007-2131 164-295 (421)
149 TIGR02270 conserved hypothetic 98.5 5.8E-06 1.3E-10 104.5 21.0 244 473-795 53-297 (410)
150 KOG0168 Putative ubiquitin fus 98.4 7.1E-05 1.5E-09 96.9 28.6 249 437-689 173-436 (1051)
151 TIGR02270 conserved hypothetic 98.4 1.7E-05 3.8E-10 100.3 22.4 244 558-892 54-298 (410)
152 cd08374 C2F_Ferlin C2 domain s 98.4 7.6E-07 1.7E-11 95.7 8.5 90 2012-2101 2-124 (133)
153 KOG1062 Vesicle coat complex A 98.4 0.00026 5.6E-09 92.0 32.2 432 397-884 114-575 (866)
154 COG5038 Ca2+-dependent lipid-b 98.4 5.7E-07 1.2E-11 119.4 8.9 117 2010-2133 1040-1162(1227)
155 KOG2160 Armadillo/beta-catenin 98.4 1.2E-05 2.7E-10 97.2 19.4 188 50-244 92-281 (342)
156 cd00256 VATPase_H VATPase_H, r 98.4 0.00035 7.5E-09 88.5 31.9 347 84-503 53-425 (429)
157 cd00256 VATPase_H VATPase_H, r 98.3 0.00014 3.1E-09 91.9 27.3 316 390-708 53-425 (429)
158 PF05536 Neurochondrin: Neuroc 98.3 0.0018 3.9E-08 85.2 38.1 237 38-287 4-260 (543)
159 KOG1789 Endocytosis protein RM 98.3 0.025 5.5E-07 74.8 46.2 335 393-777 1774-2142(2235)
160 KOG0946 ER-Golgi vesicle-tethe 98.3 0.012 2.5E-07 76.9 42.1 222 85-312 23-265 (970)
161 COG5181 HSH155 U2 snRNP splice 98.2 0.00082 1.8E-08 84.5 30.3 272 518-820 606-889 (975)
162 PLN02270 phospholipase D alpha 98.2 3.2E-06 6.9E-11 111.4 10.3 122 2008-2132 6-150 (808)
163 COG1413 FOG: HEAT repeat [Ener 98.2 0.00012 2.6E-09 90.7 23.5 250 474-795 43-305 (335)
164 COG1413 FOG: HEAT repeat [Ener 98.2 0.00019 4.2E-09 88.9 25.0 275 432-789 43-330 (335)
165 PLN02952 phosphoinositide phos 98.2 6.8E-06 1.5E-10 106.8 11.5 117 2009-2130 469-599 (599)
166 KOG1028 Ca2+-dependent phospho 98.1 3.3E-06 7.2E-11 107.2 7.5 89 2009-2097 297-393 (421)
167 KOG1031 Predicted Ca2+-depende 98.1 4.5E-06 9.8E-11 102.1 7.8 117 2008-2128 1-134 (1169)
168 PLN02223 phosphoinositide phos 98.1 8.5E-06 1.8E-10 103.9 10.7 117 2009-2130 408-537 (537)
169 cd08689 C2_fungal_Pkc1p C2 dom 98.1 3.4E-06 7.3E-11 86.2 4.8 84 2012-2101 1-89 (109)
170 KOG2160 Armadillo/beta-catenin 98.0 0.0002 4.4E-09 87.0 19.1 180 407-586 99-281 (342)
171 KOG1011 Neurotransmitter relea 98.0 1E-05 2.2E-10 100.2 8.1 111 2012-2127 297-421 (1283)
172 COG5038 Ca2+-dependent lipid-b 98.0 1.4E-05 3E-10 106.8 9.1 146 1982-2132 393-559 (1227)
173 KOG1062 Vesicle coat complex A 97.9 0.064 1.4E-06 70.8 39.6 230 478-763 354-591 (866)
174 COG5181 HSH155 U2 snRNP splice 97.9 0.0086 1.9E-07 75.8 30.2 328 434-795 606-947 (975)
175 KOG3678 SARM protein (with ste 97.9 0.00094 2E-08 81.7 20.7 274 467-796 173-454 (832)
176 PLN02222 phosphoinositide phos 97.9 5.5E-05 1.2E-09 98.3 11.1 117 2009-2130 451-581 (581)
177 KOG0212 Uncharacterized conser 97.8 0.0013 2.9E-08 82.7 21.7 379 481-890 50-444 (675)
178 PF03224 V-ATPase_H_N: V-ATPas 97.8 0.00017 3.6E-09 89.0 13.5 219 85-310 56-292 (312)
179 COG5215 KAP95 Karyopherin (imp 97.8 0.27 5.9E-06 62.7 53.4 576 89-794 99-711 (858)
180 KOG0212 Uncharacterized conser 97.8 0.002 4.4E-08 81.2 22.0 345 431-795 83-445 (675)
181 PF03224 V-ATPase_H_N: V-ATPas 97.8 0.0007 1.5E-08 83.5 18.3 191 638-836 106-308 (312)
182 PLN02230 phosphoinositide phos 97.8 9.3E-05 2E-09 96.3 10.8 118 2008-2130 467-598 (598)
183 PF05536 Neurochondrin: Neuroc 97.7 0.0068 1.5E-07 80.0 27.9 433 638-1086 6-515 (543)
184 KOG0211 Protein phosphatase 2A 97.6 0.033 7.1E-07 75.2 32.1 569 88-751 86-662 (759)
185 COG5240 SEC21 Vesicle coat com 97.6 0.36 7.8E-06 61.6 37.7 288 435-753 267-555 (898)
186 PLN02228 Phosphoinositide phos 97.6 0.00027 5.8E-09 91.9 11.4 119 2009-2132 430-563 (567)
187 KOG0567 HEAT repeat-containing 97.6 0.003 6.5E-08 74.0 18.5 245 490-794 21-280 (289)
188 KOG0169 Phosphoinositide-speci 97.6 0.00025 5.3E-09 92.4 10.6 116 2011-2132 617-746 (746)
189 KOG2059 Ras GTPase-activating 97.6 0.00016 3.4E-09 92.5 8.7 120 2011-2132 6-127 (800)
190 KOG0211 Protein phosphatase 2A 97.6 0.03 6.5E-07 75.6 30.1 413 435-889 240-663 (759)
191 KOG1242 Protein containing ada 97.5 0.014 3.1E-07 75.3 25.6 409 475-931 97-518 (569)
192 KOG1242 Protein containing ada 97.5 0.013 2.7E-07 75.8 24.8 369 393-794 99-483 (569)
193 KOG2759 Vacuolar H+-ATPase V1 97.5 0.071 1.5E-06 66.4 29.5 351 84-503 65-438 (442)
194 KOG1328 Synaptic vesicle prote 97.5 4.5E-05 9.7E-10 96.5 2.4 93 2012-2106 949-1055(1103)
195 KOG2759 Vacuolar H+-ATPase V1 97.5 0.021 4.6E-07 70.8 24.8 316 390-708 65-438 (442)
196 PRK14707 hypothetical protein; 97.5 1.7 3.6E-05 63.1 68.5 985 50-1114 131-1226(2710)
197 KOG3678 SARM protein (with ste 97.5 0.0062 1.3E-07 74.8 19.5 274 119-418 174-450 (832)
198 KOG4413 26S proteasome regulat 97.4 0.074 1.6E-06 63.7 27.6 215 61-288 63-286 (524)
199 COG5240 SEC21 Vesicle coat com 97.4 0.48 1E-05 60.5 34.9 286 476-795 266-556 (898)
200 KOG1059 Vesicle coat complex A 97.4 0.19 4E-06 65.8 31.9 243 435-707 147-400 (877)
201 KOG1060 Vesicle coat complex A 97.4 0.12 2.7E-06 67.9 30.2 339 86-527 110-477 (968)
202 KOG1060 Vesicle coat complex A 97.3 0.19 4.1E-06 66.3 31.6 437 394-890 39-533 (968)
203 KOG4646 Uncharacterized conser 97.3 0.00098 2.1E-08 70.7 9.6 119 435-555 19-138 (173)
204 KOG1328 Synaptic vesicle prote 97.3 8.9E-05 1.9E-09 93.9 2.0 173 1929-2132 62-303 (1103)
205 PLN02352 phospholipase D epsil 97.3 0.00068 1.5E-08 90.0 9.7 117 2008-2132 8-132 (758)
206 KOG4413 26S proteasome regulat 97.2 0.1 2.2E-06 62.6 25.3 355 406-791 97-481 (524)
207 KOG4646 Uncharacterized conser 97.2 0.0028 6E-08 67.4 11.1 128 393-525 19-146 (173)
208 KOG1061 Vesicle coat complex A 97.1 0.41 8.9E-06 63.7 31.2 427 55-588 63-490 (734)
209 KOG1059 Vesicle coat complex A 97.0 0.33 7.1E-06 63.7 29.3 322 393-754 147-491 (877)
210 KOG0905 Phosphoinositide 3-kin 97.0 0.00051 1.1E-08 91.3 4.8 145 1932-2113 1480-1636(1639)
211 KOG2259 Uncharacterized conser 97.0 0.0068 1.5E-07 77.7 14.3 294 476-796 200-513 (823)
212 KOG1061 Vesicle coat complex A 97.0 0.057 1.2E-06 71.4 22.9 433 437-926 54-519 (734)
213 PLN02964 phosphatidylserine de 97.0 0.00055 1.2E-08 90.3 4.6 105 2008-2120 52-160 (644)
214 KOG1078 Vesicle coat complex C 96.9 1.9 4.1E-05 57.6 35.0 281 476-795 247-533 (865)
215 KOG2259 Uncharacterized conser 96.9 0.015 3.2E-07 74.8 16.1 216 563-791 203-472 (823)
216 KOG4535 HEAT and armadillo rep 96.9 0.057 1.2E-06 67.4 20.2 275 442-753 305-603 (728)
217 KOG2973 Uncharacterized conser 96.9 0.045 9.8E-07 65.6 18.4 287 477-795 6-316 (353)
218 PF13646 HEAT_2: HEAT repeats; 96.8 0.0023 4.9E-08 63.4 6.6 86 681-790 1-88 (88)
219 PF13646 HEAT_2: HEAT repeats; 96.8 0.0024 5.1E-08 63.3 6.5 86 639-749 1-88 (88)
220 KOG1078 Vesicle coat complex C 96.8 2 4.4E-05 57.4 33.8 460 409-934 38-531 (865)
221 KOG0567 HEAT repeat-containing 96.7 0.074 1.6E-06 62.8 18.2 200 635-890 65-280 (289)
222 PF00514 Arm: Armadillo/beta-c 96.6 0.0033 7.1E-08 54.1 5.2 41 754-794 1-41 (41)
223 KOG2059 Ras GTPase-activating 96.6 0.0025 5.5E-08 82.0 6.1 103 2027-2130 149-276 (800)
224 cd08683 C2_C2cd3 C2 domain fou 96.6 0.0035 7.5E-08 66.4 5.8 99 2012-2110 1-143 (143)
225 PF14664 RICTOR_N: Rapamycin-i 96.5 0.6 1.3E-05 59.3 25.8 302 476-794 27-364 (371)
226 KOG2973 Uncharacterized conser 96.5 0.41 8.8E-06 57.9 22.4 198 86-298 5-213 (353)
227 PRK14707 hypothetical protein; 96.5 10 0.00022 55.8 57.3 694 54-794 177-907 (2710)
228 PF14664 RICTOR_N: Rapamycin-i 96.4 0.14 3.1E-06 64.8 19.8 192 63-268 5-198 (371)
229 KOG4535 HEAT and armadillo rep 96.3 1.9 4E-05 54.6 27.6 102 736-840 496-602 (728)
230 PF00514 Arm: Armadillo/beta-c 96.3 0.0059 1.3E-07 52.5 4.6 41 668-708 1-41 (41)
231 KOG0915 Uncharacterized conser 96.2 0.74 1.6E-05 64.9 25.9 299 487-796 970-1308(1702)
232 KOG0915 Uncharacterized conser 96.2 11 0.00025 53.9 37.4 616 88-840 822-1468(1702)
233 KOG2734 Uncharacterized conser 96.2 0.36 7.8E-06 60.4 20.7 208 104-312 104-329 (536)
234 KOG1077 Vesicle coat complex A 96.2 7.7 0.00017 51.5 33.0 104 474-587 329-433 (938)
235 KOG2734 Uncharacterized conser 96.1 0.94 2E-05 57.0 23.7 268 58-334 101-395 (536)
236 KOG1264 Phospholipase C [Lipid 96.1 0.011 2.3E-07 76.7 7.4 87 2008-2097 1063-1159(1267)
237 KOG1077 Vesicle coat complex A 95.9 9.2 0.0002 50.9 31.8 242 50-312 157-415 (938)
238 PF05004 IFRD: Interferon-rela 95.8 0.89 1.9E-05 56.5 22.1 200 38-244 42-256 (309)
239 KOG1058 Vesicle coat complex C 95.8 0.69 1.5E-05 61.0 21.2 314 434-796 136-465 (948)
240 KOG1517 Guanine nucleotide bin 95.8 0.2 4.3E-06 67.6 16.8 241 408-672 484-738 (1387)
241 PF12348 CLASP_N: CLASP N term 95.7 0.12 2.6E-06 60.7 13.7 179 94-289 17-207 (228)
242 KOG3837 Uncharacterized conser 95.7 0.014 2.9E-07 71.5 5.5 138 1994-2134 345-507 (523)
243 PF12348 CLASP_N: CLASP N term 95.5 0.09 2E-06 61.7 11.8 185 484-670 17-210 (228)
244 KOG1943 Beta-tubulin folding c 95.5 18 0.0004 50.5 46.8 467 395-891 346-882 (1133)
245 PF10165 Ric8: Guanine nucleot 95.3 1.1 2.4E-05 58.4 21.5 180 104-288 1-218 (446)
246 PF13513 HEAT_EZ: HEAT-like re 95.2 0.034 7.4E-07 50.7 5.4 55 738-792 1-55 (55)
247 KOG1011 Neurotransmitter relea 95.2 0.037 7.9E-07 70.0 7.1 104 2008-2113 1119-1238(1283)
248 COG5096 Vesicle coat complex, 95.2 8.7 0.00019 52.6 29.3 331 437-820 60-404 (757)
249 PF12460 MMS19_C: RNAPII trans 95.1 7.6 0.00016 50.3 28.0 357 87-464 2-397 (415)
250 PF10165 Ric8: Guanine nucleot 95.1 1 2.2E-05 58.8 20.0 252 414-666 4-337 (446)
251 COG5369 Uncharacterized conser 94.9 0.11 2.3E-06 65.9 10.1 185 494-678 409-606 (743)
252 KOG1517 Guanine nucleotide bin 94.8 0.26 5.7E-06 66.6 13.6 156 390-546 512-672 (1387)
253 PF13513 HEAT_EZ: HEAT-like re 94.7 0.04 8.6E-07 50.3 4.3 55 651-706 1-55 (55)
254 smart00185 ARM Armadillo/beta- 94.4 0.078 1.7E-06 44.8 5.3 39 755-793 2-40 (41)
255 KOG2062 26S proteasome regulat 94.4 1.1 2.3E-05 59.3 17.2 265 475-784 414-684 (929)
256 PF12460 MMS19_C: RNAPII trans 94.3 19 0.00041 46.8 28.9 347 437-796 4-396 (415)
257 PF08569 Mo25: Mo25-like; Int 94.1 11 0.00024 47.5 25.1 196 470-666 72-283 (335)
258 PF09759 Atx10homo_assoc: Spin 94.0 0.19 4.2E-06 52.2 7.9 69 490-558 2-72 (102)
259 KOG1326 Membrane-associated pr 93.9 0.073 1.6E-06 71.5 5.9 102 2012-2124 615-720 (1105)
260 PF09759 Atx10homo_assoc: Spin 93.8 0.16 3.4E-06 52.8 6.8 66 449-514 3-70 (102)
261 PF10358 NT-C2: N-terminal C2 93.8 0.26 5.7E-06 53.8 9.1 116 2012-2134 9-139 (143)
262 KOG1240 Protein kinase contain 93.7 2.3 4.9E-05 59.1 18.9 254 529-795 436-726 (1431)
263 COG5096 Vesicle coat complex, 93.4 0.97 2.1E-05 61.3 14.9 165 567-752 28-194 (757)
264 KOG1240 Protein kinase contain 93.2 2.4 5.1E-05 58.9 17.9 290 435-753 425-725 (1431)
265 smart00185 ARM Armadillo/beta- 93.0 0.18 4E-06 42.6 5.0 39 669-707 2-40 (41)
266 COG5369 Uncharacterized conser 92.8 0.55 1.2E-05 59.9 10.6 180 624-808 418-605 (743)
267 COG5231 VMA13 Vacuolar H+-ATPa 92.7 1.3 2.8E-05 53.7 13.0 220 526-752 159-427 (432)
268 KOG2062 26S proteasome regulat 92.7 3.3 7.1E-05 55.1 17.4 274 516-840 413-695 (929)
269 KOG4151 Myosin assembly protei 92.4 1.6 3.4E-05 58.7 14.6 200 76-289 497-700 (748)
270 PF05004 IFRD: Interferon-rela 92.4 4 8.7E-05 50.8 17.5 188 601-794 52-257 (309)
271 COG5231 VMA13 Vacuolar H+-ATPa 92.1 7.7 0.00017 47.4 18.2 265 393-666 152-428 (432)
272 KOG1943 Beta-tubulin folding c 92.1 73 0.0016 45.1 47.8 249 32-316 334-597 (1133)
273 KOG1058 Vesicle coat complex C 91.8 63 0.0014 43.9 31.5 363 93-564 108-486 (948)
274 PF12755 Vac14_Fab1_bd: Vacuol 91.8 0.49 1.1E-05 48.9 7.3 92 696-794 3-96 (97)
275 KOG1248 Uncharacterized conser 91.2 91 0.002 44.6 53.0 218 568-797 664-901 (1176)
276 KOG1013 Synaptic vesicle prote 91.2 0.07 1.5E-06 64.4 0.4 88 2012-2099 95-191 (362)
277 PF11841 DUF3361: Domain of un 90.8 2.1 4.6E-05 48.0 11.4 117 469-586 6-130 (160)
278 KOG1327 Copine [Signal transdu 90.4 0.46 1E-05 61.5 6.7 79 2023-2102 151-238 (529)
279 PF08045 CDC14: Cell division 89.7 3.2 6.8E-05 50.1 12.4 98 56-154 106-207 (257)
280 KOG1013 Synaptic vesicle prote 88.8 0.66 1.4E-05 56.4 5.9 99 1994-2092 213-323 (362)
281 PF11701 UNC45-central: Myosin 88.5 2.5 5.5E-05 47.4 10.0 109 390-501 43-157 (157)
282 PF12717 Cnd1: non-SMC mitotic 88.3 8.7 0.00019 43.9 14.4 93 650-754 1-93 (178)
283 PF12717 Cnd1: non-SMC mitotic 88.3 17 0.00037 41.6 16.7 89 529-622 1-93 (178)
284 PF12416 DUF3668: Cep120 prote 88.1 1.1 2.4E-05 56.0 7.5 103 2011-2115 1-116 (340)
285 KOG2060 Rab3 effector RIM1 and 87.9 0.47 1E-05 58.5 4.0 108 2009-2118 268-385 (405)
286 PF11841 DUF3361: Domain of un 87.3 8.7 0.00019 43.3 13.0 120 426-546 5-132 (160)
287 PF11701 UNC45-central: Myosin 87.1 4.7 0.0001 45.3 11.1 135 404-543 18-157 (157)
288 PF12719 Cnd3: Nuclear condens 86.9 12 0.00025 46.4 15.5 169 475-649 27-209 (298)
289 PF13764 E3_UbLigase_R4: E3 ub 86.9 23 0.00051 49.3 19.4 183 83-268 116-329 (802)
290 KOG2956 CLIP-associating prote 86.6 28 0.00061 44.9 18.2 188 39-244 286-476 (516)
291 COG5116 RPN2 26S proteasome re 86.6 14 0.00029 48.2 15.4 134 635-789 549-686 (926)
292 KOG1020 Sister chromatid cohes 86.0 2.1E+02 0.0046 42.2 43.1 544 84-680 816-1419(1692)
293 KOG2611 Neurochondrin/leucine- 85.9 28 0.00062 44.7 17.5 123 56-184 26-165 (698)
294 PF08569 Mo25: Mo25-like; Int 85.8 37 0.00081 42.9 19.0 203 427-632 71-294 (335)
295 KOG3036 Protein involved in ce 85.4 94 0.002 37.5 21.0 194 41-244 28-246 (293)
296 KOG2274 Predicted importin 9 [ 84.9 1.4E+02 0.0031 41.6 24.2 207 85-304 491-705 (1005)
297 PF06025 DUF913: Domain of Unk 83.7 54 0.0012 42.2 19.4 97 126-227 107-207 (379)
298 KOG0414 Chromosome condensatio 83.3 2.4E+02 0.0053 40.6 50.7 141 638-795 920-1065(1251)
299 KOG1788 Uncharacterized conser 82.9 2.3E+02 0.0049 40.0 27.9 406 57-502 483-981 (2799)
300 KOG3036 Protein involved in ce 82.8 42 0.00092 40.3 16.1 137 416-554 104-255 (293)
301 PF12755 Vac14_Fab1_bd: Vacuol 82.7 4.8 0.0001 41.8 7.9 90 59-152 4-94 (97)
302 PF01347 Vitellogenin_N: Lipop 82.6 19 0.00042 48.9 16.0 173 636-836 394-584 (618)
303 KOG2032 Uncharacterized conser 82.2 1.4E+02 0.0031 39.1 21.6 251 441-708 267-531 (533)
304 KOG1020 Sister chromatid cohes 81.9 3.1E+02 0.0066 40.7 37.1 135 395-543 821-958 (1692)
305 smart00638 LPD_N Lipoprotein N 81.7 18 0.00038 48.9 14.9 175 635-836 355-540 (574)
306 PF05918 API5: Apoptosis inhib 81.3 6.3 0.00014 52.3 10.0 119 528-662 34-158 (556)
307 KOG2956 CLIP-associating prote 81.0 44 0.00096 43.3 16.6 169 591-794 305-477 (516)
308 KOG1967 DNA repair/transcripti 80.6 12 0.00026 51.3 12.2 144 557-706 866-1022(1030)
309 PF12719 Cnd3: Nuclear condens 80.5 16 0.00035 45.2 12.9 172 638-821 27-208 (298)
310 KOG2999 Regulator of Rac1, req 80.5 20 0.00043 46.8 13.4 155 85-245 84-242 (713)
311 PF08045 CDC14: Cell division 80.4 7.9 0.00017 46.8 9.7 84 231-314 106-189 (257)
312 PF02985 HEAT: HEAT repeat; I 79.8 2.9 6.3E-05 34.0 4.1 29 767-795 2-30 (31)
313 PF13764 E3_UbLigase_R4: E3 ub 79.2 2.1E+02 0.0046 40.4 23.6 238 38-288 119-406 (802)
314 PF01347 Vitellogenin_N: Lipop 79.0 27 0.00059 47.5 15.5 119 637-786 486-614 (618)
315 PF06371 Drf_GBD: Diaphanous G 78.8 17 0.00036 41.4 11.5 110 39-153 66-186 (187)
316 PF05918 API5: Apoptosis inhib 78.7 16 0.00034 48.8 12.3 132 639-792 25-160 (556)
317 KOG2025 Chromosome condensatio 78.2 36 0.00078 45.8 15.0 98 515-613 84-185 (892)
318 PF14225 MOR2-PAG1_C: Cell mor 77.7 1.5E+02 0.0032 36.5 19.4 179 516-706 60-252 (262)
319 smart00638 LPD_N Lipoprotein N 77.6 44 0.00094 45.2 16.7 160 85-277 394-567 (574)
320 KOG2999 Regulator of Rac1, req 77.6 25 0.00054 46.0 13.0 152 435-588 86-243 (713)
321 KOG0414 Chromosome condensatio 77.4 13 0.00028 52.3 11.3 140 434-588 921-1065(1251)
322 PF11698 V-ATPase_H_C: V-ATPas 77.4 6.3 0.00014 42.3 6.8 71 433-503 44-115 (119)
323 COG5098 Chromosome condensatio 77.0 22 0.00048 47.3 12.5 131 444-589 908-1039(1128)
324 KOG1991 Nuclear transport rece 75.9 3.7E+02 0.008 38.3 35.5 159 144-312 391-558 (1010)
325 COG5116 RPN2 26S proteasome re 75.2 43 0.00093 43.9 14.1 160 642-832 521-684 (926)
326 cd08693 C2_PI3K_class_I_beta_d 74.4 7.2 0.00016 44.6 6.8 87 2011-2097 9-119 (173)
327 PF02985 HEAT: HEAT repeat; I 74.0 4.7 0.0001 32.8 3.8 28 127-154 2-29 (31)
328 KOG4653 Uncharacterized conser 73.7 95 0.0021 43.0 17.3 213 479-706 732-962 (982)
329 PF07814 WAPL: Wings apart-lik 73.7 47 0.001 42.5 14.5 215 41-258 23-312 (361)
330 KOG2025 Chromosome condensatio 72.9 1.1E+02 0.0024 41.6 17.2 180 638-841 86-294 (892)
331 PF04063 DUF383: Domain of unk 72.7 14 0.0003 43.1 8.7 103 98-208 9-137 (192)
332 KOG1967 DNA repair/transcripti 72.7 22 0.00047 49.1 11.3 154 592-752 867-1023(1030)
333 PF04078 Rcd1: Cell differenti 72.1 78 0.0017 38.6 14.7 165 417-585 76-260 (262)
334 cd08684 C2A_Tac2-N C2 domain f 71.9 3.2 6.9E-05 42.0 2.8 64 2034-2098 28-92 (103)
335 PF06371 Drf_GBD: Diaphanous G 71.4 7.1 0.00015 44.5 6.0 81 164-244 100-186 (187)
336 PF07814 WAPL: Wings apart-lik 69.6 1.8E+02 0.004 37.2 18.5 270 476-754 23-356 (361)
337 PF04063 DUF383: Domain of unk 69.4 33 0.00072 40.0 10.8 93 84-181 52-157 (192)
338 cd08380 C2_PI3K_like C2 domain 68.6 13 0.00028 41.5 7.2 87 2011-2097 9-106 (156)
339 PF04078 Rcd1: Cell differenti 68.6 2.9E+02 0.0063 34.0 19.0 145 444-589 7-170 (262)
340 KOG4653 Uncharacterized conser 68.0 44 0.00095 46.0 12.5 186 89-288 732-918 (982)
341 KOG2032 Uncharacterized conser 67.8 1.8E+02 0.0039 38.3 17.2 155 635-794 252-415 (533)
342 PF11698 V-ATPase_H_C: V-ATPas 66.3 15 0.00032 39.6 6.5 76 1802-1877 40-115 (119)
343 PF08167 RIX1: rRNA processing 65.7 24 0.00053 40.0 8.6 88 1853-1944 30-123 (165)
344 cd08695 C2_Dock-B C2 domains f 61.5 32 0.00069 40.0 8.6 86 2044-2132 56-151 (189)
345 cd08398 C2_PI3K_class_I_alpha 61.2 20 0.00043 40.6 6.8 85 2011-2097 9-105 (158)
346 KOG1832 HIV-1 Vpr-binding prot 59.4 2.1E+02 0.0045 39.9 16.0 143 407-557 625-784 (1516)
347 PF00792 PI3K_C2: Phosphoinosi 59.2 11 0.00023 41.6 4.2 55 2044-2098 23-85 (142)
348 PF11707 Npa1: Ribosome 60S bi 58.3 3.8E+02 0.0082 34.0 18.1 157 639-797 58-240 (330)
349 PF15627 CEP76-C2: CEP76 C2 do 57.9 62 0.0013 36.6 9.7 118 2012-2130 11-148 (156)
350 KOG1949 Uncharacterized conser 57.1 70 0.0015 43.2 11.2 146 640-795 177-332 (1005)
351 KOG1012 Ca2+-dependent lipid-b 55.8 5.3 0.00011 43.1 1.1 56 2009-2065 74-135 (136)
352 PF06025 DUF913: Domain of Unk 55.6 5.3E+02 0.012 33.5 18.9 96 218-314 108-209 (379)
353 KOG2137 Protein kinase [Signal 55.1 1.6E+02 0.0035 40.3 14.3 134 676-823 386-521 (700)
354 PF08324 PUL: PUL domain; Int 52.7 2.6E+02 0.0057 33.9 15.0 135 649-786 122-266 (268)
355 KOG1326 Membrane-associated pr 52.6 6.5 0.00014 54.0 1.4 183 1875-2094 103-300 (1105)
356 KOG2611 Neurochondrin/leucine- 51.9 2.2E+02 0.0048 37.3 13.9 135 130-268 16-162 (698)
357 KOG4464 Signaling protein RIC- 51.7 6.7E+02 0.015 32.7 21.4 137 87-227 48-198 (532)
358 KOG1820 Microtubule-associated 50.0 3.3E+02 0.0071 38.7 16.6 177 437-622 258-444 (815)
359 KOG1329 Phospholipase D1 [Lipi 49.2 12 0.00026 51.4 3.0 86 2029-2116 138-225 (887)
360 KOG2274 Predicted importin 9 [ 47.2 2.8E+02 0.0061 39.0 14.7 180 56-245 506-689 (1005)
361 KOG1566 Conserved protein Mo25 45.0 5.1E+02 0.011 32.7 15.2 201 554-756 75-289 (342)
362 KOG3665 ZYG-1-like serine/thre 44.6 1.1E+03 0.024 33.2 20.6 157 148-310 494-676 (699)
363 PF10363 DUF2435: Protein of u 44.5 51 0.0011 34.1 6.0 84 726-821 5-88 (92)
364 KOG1243 Protein kinase [Genera 44.0 1E+02 0.0022 42.0 10.0 222 469-707 288-514 (690)
365 cd08696 C2_Dock-C C2 domains f 43.6 88 0.0019 36.3 8.3 76 2031-2110 39-129 (179)
366 cd01757 PLAT_RAB6IP1 PLAT/LH2 42.5 1.2E+02 0.0026 32.6 8.6 74 2013-2094 4-79 (114)
367 KOG1243 Protein kinase [Genera 42.3 1.2E+02 0.0027 41.3 10.4 186 591-793 329-514 (690)
368 COG5098 Chromosome condensatio 41.7 1.2E+02 0.0025 41.1 9.7 115 767-894 301-419 (1128)
369 cd08397 C2_PI3K_class_III C2 d 41.7 31 0.00067 39.1 4.3 69 2029-2097 30-106 (159)
370 KOG0301 Phospholipase A2-activ 40.8 5.2E+02 0.011 35.5 15.3 161 608-776 560-727 (745)
371 KOG1820 Microtubule-associated 40.4 3.9E+02 0.0085 37.9 15.1 138 647-795 305-444 (815)
372 PF14668 RICTOR_V: Rapamycin-i 40.2 81 0.0018 31.3 6.4 60 142-208 4-63 (73)
373 PF12031 DUF3518: Domain of un 39.1 48 0.001 39.8 5.4 81 99-182 139-227 (257)
374 PF12031 DUF3518: Domain of un 38.0 77 0.0017 38.2 6.8 85 447-532 139-232 (257)
375 KOG3665 ZYG-1-like serine/thre 38.0 1E+03 0.022 33.5 18.5 176 497-687 494-675 (699)
376 PF12530 DUF3730: Protein of u 37.9 8E+02 0.017 29.6 15.7 133 440-588 9-152 (234)
377 cd08687 C2_PKN-like C2 domain 37.3 51 0.0011 34.1 4.5 55 2025-2083 5-59 (98)
378 KOG1991 Nuclear transport rece 37.0 1.5E+03 0.033 32.7 47.2 129 96-245 16-156 (1010)
379 KOG1832 HIV-1 Vpr-binding prot 36.4 1.5E+03 0.033 32.3 21.9 158 512-680 597-786 (1516)
380 KOG1566 Conserved protein Mo25 36.1 9.9E+02 0.021 30.3 15.7 196 470-666 75-286 (342)
381 KOG1525 Sister chromatid cohes 36.0 1.8E+03 0.04 33.2 26.2 148 637-795 259-406 (1266)
382 PF08167 RIX1: rRNA processing 35.5 2.2E+02 0.0048 32.4 10.0 117 125-251 25-149 (165)
383 cd08679 C2_DOCK180_related C2 35.5 1.3E+02 0.0028 34.6 8.2 68 2037-2105 45-127 (178)
384 PF14429 DOCK-C2: C2 domain in 35.5 82 0.0018 36.3 6.7 55 2045-2103 63-123 (184)
385 cd00113 PLAT PLAT (Polycystin- 34.4 1.8E+02 0.004 30.6 8.6 78 2013-2094 4-87 (116)
386 PF14500 MMS19_N: Dos2-interac 33.5 5.7E+02 0.012 31.5 13.6 154 1806-1965 19-240 (262)
387 PF12530 DUF3730: Protein of u 33.0 3E+02 0.0066 33.1 11.1 123 1300-1434 35-166 (234)
388 PF11618 DUF3250: Protein of u 32.4 52 0.0011 35.0 3.9 94 2032-2128 2-103 (107)
389 PF14631 FancD2: Fanconi anaem 32.4 1.8E+03 0.038 33.9 20.4 131 645-786 443-575 (1426)
390 KOG1248 Uncharacterized conser 31.7 2E+03 0.043 32.3 53.4 225 647-892 664-900 (1176)
391 cd08697 C2_Dock-D C2 domains f 31.3 1.4E+02 0.0031 34.7 7.6 78 2030-2110 41-135 (185)
392 PRK09169 hypothetical protein; 31.1 2.6E+03 0.056 33.5 57.2 148 642-794 631-782 (2316)
393 KOG2137 Protein kinase [Signal 31.1 4.1E+02 0.0088 36.7 12.5 131 638-778 390-521 (700)
394 KOG2933 Uncharacterized conser 30.1 1.7E+02 0.0038 36.5 8.2 141 639-794 90-234 (334)
395 PF08324 PUL: PUL domain; Int 29.9 1E+03 0.022 28.8 15.2 133 528-697 122-263 (268)
396 PF14668 RICTOR_V: Rapamycin-i 29.5 1.8E+02 0.0038 29.0 6.8 66 101-171 4-70 (73)
397 cd03567 VHS_GGA VHS domain fam 28.7 88 0.0019 34.8 5.1 94 1529-1631 18-119 (139)
398 cd01753 PLAT_LOX PLAT domain o 28.3 2.8E+02 0.006 29.7 8.6 79 2013-2094 4-87 (113)
399 PF10363 DUF2435: Protein of u 28.3 1.2E+02 0.0027 31.3 5.8 82 520-603 7-88 (92)
400 cd03569 VHS_Hrs_Vps27p VHS dom 26.5 49 0.0011 36.8 2.7 94 1529-1631 21-117 (142)
401 cd08694 C2_Dock-A C2 domains f 25.7 3.4E+02 0.0073 32.1 9.3 94 2035-2131 43-152 (196)
402 PF12830 Nipped-B_C: Sister ch 25.1 8.5E+02 0.018 28.3 12.6 125 127-269 10-141 (187)
403 cd04012 C2A_PI3K_class_II C2 d 24.7 1.4E+02 0.0029 34.3 5.9 90 2008-2097 6-118 (171)
404 cd03568 VHS_STAM VHS domain fa 24.3 2.2E+02 0.0047 31.9 7.2 72 725-796 38-112 (144)
405 PF11865 DUF3385: Domain of un 24.2 3E+02 0.0066 31.2 8.5 144 638-793 11-156 (160)
406 KOG1327 Copine [Signal transdu 23.9 87 0.0019 41.6 4.6 80 2044-2128 44-130 (529)
407 cd03568 VHS_STAM VHS domain fa 23.5 1.5E+02 0.0032 33.2 5.7 73 679-753 37-110 (144)
408 cd03561 VHS VHS domain family; 23.5 1.9E+02 0.004 31.7 6.5 72 680-753 38-112 (133)
409 PF13251 DUF4042: Domain of un 22.9 6.7E+02 0.015 29.3 11.0 106 642-753 45-174 (182)
410 PF10521 DUF2454: Protein of u 22.7 2.3E+02 0.0049 35.1 7.7 111 1388-1498 118-254 (282)
411 smart00308 LH2 Lipoxygenase ho 22.3 3.8E+02 0.0083 27.7 8.3 78 2013-2094 4-86 (105)
412 smart00288 VHS Domain present 22.2 1.3E+02 0.0028 33.0 5.0 77 1555-1635 34-114 (133)
413 smart00288 VHS Domain present 21.0 4.2E+02 0.0092 29.1 8.6 70 85-154 38-111 (133)
414 cd03569 VHS_Hrs_Vps27p VHS dom 20.8 1.6E+02 0.0035 32.8 5.4 73 679-753 41-114 (142)
415 cd08399 C2_PI3K_class_I_gamma 20.4 5.5E+02 0.012 29.9 9.6 69 2011-2080 11-87 (178)
416 PF11865 DUF3385: Domain of un 20.3 6.3E+02 0.014 28.7 10.0 139 517-666 11-157 (160)
417 PF08506 Cse1: Cse1; InterPro 20.2 1.2E+03 0.026 30.2 13.6 152 425-581 203-369 (370)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=0 Score=4428.73 Aligned_cols=2100 Identities=71% Similarity=1.057 Sum_probs=2034.8
Q ss_pred CCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 000124 29 SAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATL 108 (2138)
Q Consensus 29 ~~med~~~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L 108 (2138)
..||||+++..++..++++|+..+.+++.++.++..|+.+++.++++|..|.++.|+||.|+.+|++++..+|.+++.+|
T Consensus 3 ~~~~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL 82 (2102)
T PLN03200 3 SEMDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVL 82 (2102)
T ss_pred ccccCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45999999999999999999988777899999999999999999999999987799999999999999999999999999
Q ss_pred HHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCCh
Q 000124 109 SVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDN 188 (2138)
Q Consensus 109 ~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~ 188 (2138)
.+++.+++++.++...|+||+|+.+|++.+++.|+.|+.+|++|+.++.+ ++..+..++..|+||.|++++.++++.+.
T Consensus 83 ~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~-D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~ 161 (2102)
T PLN03200 83 GVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLS-DHVGSKIFSTEGVVPSLWDQLQPGNKQDK 161 (2102)
T ss_pred HHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcch-hhhhhhhhhhcCChHHHHHHHhCCchhhH
Confidence 99999999999999999999999999999999999999999999985321 33334667889999999999998776666
Q ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhc
Q 000124 189 VVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG 268 (2138)
Q Consensus 189 ~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~ 268 (2138)
.+++.+..+|.|||.++++++..+++.|+++.++.+|.++++..+..|+.+|++++..+++.+..+.+.|+++.|++++.
T Consensus 162 ~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~ 241 (2102)
T PLN03200 162 VVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLG 241 (2102)
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc
Confidence 68889999999999999999999999999999999999999999999999999999777778888999999999999998
Q ss_pred cCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHh
Q 000124 269 QNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYL 348 (2138)
Q Consensus 269 s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L 348 (2138)
++.+..+|+.|+++|.+++.++++.|+.+.+.||++.|++++..++++++++.+.+.++++|+++|+|++|+.++++..|
T Consensus 242 sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L 321 (2102)
T PLN03200 242 QGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYL 321 (2102)
T ss_pred cCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHH
Confidence 66677899999999999999999999999999999999999999998998887777899999999999999999999999
Q ss_pred hhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHH
Q 000124 349 GELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWV 428 (2138)
Q Consensus 349 ~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L 428 (2138)
++.+.+++.....++.+++++|..+.++ ++......++...+++.|+.+++++++..+++.+..+|..++.|+.+++.+
T Consensus 322 ~~ll~s~rd~~~~ada~gALayll~l~d-~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L 400 (2102)
T PLN03200 322 GELSESPRSPAPIADTLGALAYALMVFD-SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKL 400 (2102)
T ss_pred HHhhcccchHHHHHHHHhhHHHHHHhcC-CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH
Confidence 9999888888889999999999988876 333333456667888999999999987767899999999999999999999
Q ss_pred hhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchh
Q 000124 429 SHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 429 ~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
.+.+++++|+.|+...+.+.|..++.+|..++.++.+.+..+.+.|++|.|+++|++++..+|+.|++.|+|++..++++
T Consensus 401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nden 480 (2102)
T PLN03200 401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDES 480 (2102)
T ss_pred HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999877889
Q ss_pred HHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
+..+.+.|++|+|+++|.+++.++++.|+|+|+|++.+++.++..+.+.|++++|++++++++++.++.++++|.|+...
T Consensus 481 r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 481 KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998888899998999999999999999999999999999999998
Q ss_pred hchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 000124 589 ADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMR 668 (2138)
Q Consensus 589 ~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~ 668 (2138)
.+.+.+++++.++..+++.++..+.++++++....+..+..+......|+++.|+.+++++++++++.|+++|.+++.++
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 88889999999999999999999999999998887777766666667899999999999999999999999999999999
Q ss_pred hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000124 669 QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2138)
Q Consensus 669 ~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~AL 748 (2138)
++.+..++..|++++++.+|++++..+++.|++||.+++.+... .++..+++.|+|++|+++|++.+.++++.|+.+|
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~--~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~AL 718 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE--NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCAL 718 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH--HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999985554 6778889999999999999999999999999999
Q ss_pred HHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchh
Q 000124 749 ANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTD 828 (2138)
Q Consensus 749 aNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~ 828 (2138)
.|++.+++.+.++...|++++|+++|+++++++|++|+++|.+||...+.++.+...+.+.|.+.+|+++|++.+.+...
T Consensus 719 anLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 719 ANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 99999999999999999999999999999999999999999999999998888889999999999999999988888877
Q ss_pred HHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHH
Q 000124 829 VADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIG 908 (2138)
Q Consensus 829 ~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~ 908 (2138)
..+|+++|++|++.+.+..+.+|+|....+.|..+++|++|+.+++|.+|++|+++|+++|+++|.++|+++...++||+
T Consensus 799 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~ 878 (2102)
T PLN03200 799 TSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCIS 878 (2102)
T ss_pred HHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHH
Confidence 88999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCceeehhhhHHHHHhcccchhhHHHHHhhcCCcHHHHHHHHHHhhhhccCCCCCcccccCCCcccccccc
Q 000124 909 ALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQ 988 (2138)
Q Consensus 909 ~La~~il~s~~~ev~~~~~~~~i~a~k~~~~~~~~~L~~~g~~~~~i~~Lv~l~~~~~~~~~~d~~~~~~~~~~~~~~~~ 988 (2138)
+||+|+++++++|||+|||..+|||+|+|++++|+.|+++||.+.+|++||+|+++++...+.|+++.+++|..++..+.
T Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (2102)
T PLN03200 879 SLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLFA 958 (2102)
T ss_pred HHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcCCCCccchhhHHHHHHHHHhccCCCCcchheeccchHHHHHHhhccCCCCccccccchhhhHHHHHHHHHccC
Q 000124 989 EADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQD 1068 (2138)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~e~~~~~~~~~~ll~~lf~~ 1068 (2138)
.-.+|..|+|++|+|||+|+|||++||+||++||++||||||+|+|||||++|.+.||+++||++++||+++||+|||||
T Consensus 959 ~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~~ 1038 (2102)
T PLN03200 959 DGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQAEFEDSESIWISALLLAILFQD 1038 (2102)
T ss_pred cCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999545999999999999999999999999
Q ss_pred CccccchhhhchHHHHHHHhcchhhhhHHHHHHHHHHhhhcCCcchhHHhhhcccchhhhhhhcccccCCchhhhhhhhh
Q 000124 1069 ANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEF 1148 (2138)
Q Consensus 1069 ~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1148 (2138)
|||+|||+||++||+|+.+||||+.+|||||||+||||||||||||.+++||||||+|+|+|+||+|+|+++|++|+|||
T Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~ 1118 (2102)
T PLN03200 1039 RDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEF 1118 (2102)
T ss_pred hhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHhhhcccccccchhhhhhhhHHHHhccCCCCCCCChhHHHHHHHHhhcCCCcchhHHhhcchhHHHHHH
Q 000124 1149 FLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKY 1228 (2138)
Q Consensus 1149 ~~~~~~~~~~l~~lf~~~~ir~~~~a~~~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~e~~~l~~l~k~ 1228 (2138)
+|++|||+++||+||++||||+|+||||+||+|||||||++|||+.|+.|++.|.+|+.||+.|+..|+|+|++++|+||
T Consensus 1119 ~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kv 1198 (2102)
T PLN03200 1119 SLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKY 1198 (2102)
T ss_pred hccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccHHHHHHHHHHhhcCcccccchhhhhhHHHHHHHHHcCCCchHhHHHHHHhhhcccccccchHhhcCcchhH
Q 000124 1229 LSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPL 1308 (2138)
Q Consensus 1229 ls~~~~~~~~~~~~~l~~~lf~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~a~~~~~~l 1308 (2138)
+|+.++++.+.++.|+|+|||.|+++|++.++.+|++|||+|||.|++.+|++|+++|++||++|++|+++.|||||+||
T Consensus 1199 LSl~~s~s~e~a~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~pL 1278 (2102)
T PLN03200 1199 LSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPL 1278 (2102)
T ss_pred HHhcCccchhHHHHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccchhHHHHHHHHHHhhccCCCccccchhhcccchHHHHHHHhccCCcHHHHHHHHHHHHHHhcCcccccCcccc
Q 000124 1309 VDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIAS 1388 (2138)
Q Consensus 1309 ~~~~~~~~~~~~~~~~~al~kl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~a~l~~~l~~~~~i~~~~~a~ 1388 (2138)
|+||++++++++++++.|||||..|+.++...+.|||||+|+.|||||++++|++||+++++||++||+|+++|+++.++
T Consensus 1279 v~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~a 1358 (2102)
T PLN03200 1279 VEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAA 1358 (2102)
T ss_pred HHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHh
Confidence 99999999999999999999998888888888888999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhcCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhhhhHhhccccchhHHHHHHHHHHHhhcCCCchhHHH
Q 000124 1389 ECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQM 1468 (2138)
Q Consensus 1389 ~~~~pli~l~~s~~~~~~~~~~~~~~~ll~~e~~~~~~~~~~~v~~lv~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 1468 (2138)
.||+|||.||.+++++++|.|+++|+||+++|+++|.+++|++++|+|..+.+++|.++|.||+||.|++++||+||.||
T Consensus 1359 gaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS~~a~E~AV~aL~kl~~~~~~v~~Em 1438 (2102)
T PLN03200 1359 RCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKLDM 1438 (2102)
T ss_pred CCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCCHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhHHhhhCCCCchhHHHHHHHHHHhhhccchhccCccchhccchhhhhhhCCCcCchhHHHHHHHHHHhhcCCcc
Q 000124 1469 VKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQS 1548 (2138)
Q Consensus 1469 ~~~g~i~~~~~~~~~~p~~l~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~al~~l~~~~e~~~~ 1548 (2138)
+++|+|++++.+|+..|+++|+.++|+||||+||+.|+||++|+|+|+|+|++++|++++.||||||||||||||||||+
T Consensus 1439 v~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~ 1518 (2102)
T PLN03200 1439 VKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQC 1518 (2102)
T ss_pred HHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccchHHHHHhhcCChHHHHHHHHHHHHHHhcccccccchhhhhhhhhhHHHhhccchhhHHHHHHHHHHHhh
Q 000124 1549 LVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKIST 1628 (2138)
Q Consensus 1549 ~~~~~~~~~~~i~~l~~~l~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~pl~~~~~~~~~~~~~~~~~~~~~~~~ 1628 (2138)
+++++|+|+|+|+|||+|||||+++|||+|||+|+||++++|||+|++||+||+||||++|+|++++||+|+||||++++
T Consensus 1519 ~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~~ 1598 (2102)
T PLN03200 1519 LASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESISL 1598 (2102)
T ss_pred hhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhcCCceeeeheecccCCCCChhhHHhHHHHHhhhhccCccceeechHHHHHHHhhhhhhhhHHHHhhhHhhhc
Q 000124 1629 SWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHE 1708 (2138)
Q Consensus 1629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1708 (2138)
+|||+|+|+|||+||+|||+|+||||||+|||||++||+|++||+++|||+||++|||||+||+.|+|+++|+++|+++|
T Consensus 1599 ~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~~~~~~~~~~v~~~~lvkl~~s~~e~~~~~a~~~l~~~~ 1678 (2102)
T PLN03200 1599 SWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALLVLE 1678 (2102)
T ss_pred ccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHhccCceeEEEeeHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcChHHHHHHhhhHHHHHHHHhhcccchhHHhHHHHHhcccccccccchhhhcccccccccCccccchhhhHHHHHhh
Q 000124 1709 RTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALAL 1788 (2138)
Q Consensus 1709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1788 (2138)
++|+|++|+|+|+||||+|+++||||||||+||||||+||||+||||||+|||+|+|||||||||||++|++|+||||||
T Consensus 1679 ~~d~~~~~~~~~~g~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1758 (2102)
T PLN03200 1679 RDDSSSAEQMAESGAIEALLELLRSHQCEEAAARLLEALFNNVKVREMKATKYAIAPLSQYLLDPQTRSQQARLLAALAL 1758 (2102)
T ss_pred hcchhHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHHHHhcCcccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchhhccCchHHHHHHHHhhhcCCchhhHHHHHHHhhhhhhhccchhhHHHhhcChHHHHHHhhcCChhhHhHH
Q 000124 1789 GDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQA 1868 (2138)
Q Consensus 1789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1868 (2138)
|||||||||||+||+|||||||||+||||||||||||||||||||||||||||||||||||||||||||+|||+|+|+||
T Consensus 1759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1838 (2102)
T PLN03200 1759 GDLFQHEGLARSTDAVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQA 1838 (2102)
T ss_pred ccchhhhhhhhccCcHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhHHHhHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHhhcCCcccccccchhhhhHHHhhhccchhH
Q 000124 1869 ALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEA 1948 (2138)
Q Consensus 1869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1948 (2138)
|||||+||||||||||||||+||+|||+||||||+|+|||+||+||||+||+||||||+||+||+||||||||||+|+||
T Consensus 1839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1918 (2102)
T PLN03200 1839 ALLIKLLFSNHTIQEYASSELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALKSGSEA 1918 (2102)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcCccccccchHHhhHHHHHHHhccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhhcCCCcHHHHhHHHHHHhhhhhHHHHHHHhCCCchhhhhhhhhhcCCceEEEEEecccccccccCC
Q 000124 1949 AQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQTMGT 2028 (2138)
Q Consensus 1949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~v~~~~~~~~~~~~ 2028 (2138)
|||++|||||||||+|++||+||+|||||+||||||+|||||||||||||||||+|+|||||+|+|+|++|+||+|+|||
T Consensus 1919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~V~V~~a~nl~~~~~~ 1998 (2102)
T PLN03200 1919 AQEAALDTLFLLRQSWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAESLLQCLPGSLTVTIKRGNNLKQSMGN 1998 (2102)
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHhhhhHHHHHHHHhCCccHHHHHHHHHhhCCcceEEEEeeccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcccceEEEEecceeecceeccee
Q 000124 2029 TNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLF 2108 (2138)
Q Consensus 2029 ~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~ 2108 (2138)
+||||+++|||||+|||||||||+||+|||+|+|+||+||+||||||||||||+|||++||||+|+|+|||+||+|+|+|
T Consensus 1999 sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~ 2078 (2102)
T PLN03200 1999 TNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEY 2078 (2102)
T ss_pred CCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCccceEEEEEecCC
Q 000124 2109 NLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2109 ~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
+|++.++|+|++|+++|||||+||
T Consensus 2079 ~L~~~~~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200 2079 SLNPESNKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred ecCcccccCCCcceEEEEEEecCC
Confidence 999988899999999999999997
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.6e-166 Score=1682.68 Aligned_cols=1591 Identities=24% Similarity=0.295 Sum_probs=1368.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCc---hh
Q 000124 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDE---DL 117 (2138)
Q Consensus 41 V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e---~~ 117 (2138)
|..++..|+. .+...|+.++..|.+++.. ++++..|.. .|+||+|+.+|++++.+.|.+|+++|..|+.+. .+
T Consensus 60 IP~LV~lL~s--g~~~vk~nAaaaL~nLS~~-e~nk~~Iv~-~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~ 135 (2102)
T PLN03200 60 MPLLVSLLRS--GTLGAKVNAAAVLGVLCKE-EDLRVKVLL-GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHV 135 (2102)
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHhcC-HHHHHHHHH-cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhh
Confidence 4445555543 4567789999999999987 477777777 899999999999999999999999999998763 34
Q ss_pred H-HHHHhcCChHHHHHhhccC---CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHH
Q 000124 118 R-LKVLLGGCIPPLLSLLKSE---STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGF 193 (2138)
Q Consensus 118 r-~~v~~~G~Ip~Lv~LL~se---d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~ 193 (2138)
+ ..+...|+||+|+.+|.+. +.-+++.++.+|.+||.+ .+...+.+++.|+||.|++++.+++ +.++..
T Consensus 136 ~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~----~en~~~~IIeaGaVp~LV~LLsS~d---~~lQ~e 208 (2102)
T PLN03200 136 GSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGS----TDGFWSATLEAGGVDILVKLLSSGN---SDAQAN 208 (2102)
T ss_pred hhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcC----ccchHHHHHHcCCHHHHHHHHcCCC---HHHHHH
Confidence 4 3455789999999999985 444677889999999974 2222457789999999999998754 568999
Q ss_pred HHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCC-
Q 000124 194 VTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD-NAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN- 271 (2138)
Q Consensus 194 Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~-s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~s- 271 (2138)
|+.+|.+++.+.+.....+++.|+|+.|+.+|+++ ++.+|++|+++|.+|+..+++.+..+.+.|+++.|++++..+.
T Consensus 209 Aa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~ 288 (2102)
T PLN03200 209 AASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSK 288 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcch
Confidence 99999999988665668889999999999999864 5689999999999999888888999999999999999997322
Q ss_pred -------CHhHHHHHHHHHHHHhhcCHH-----------HH--HHH-HhcCCHHHHHHhhcCCchhhhhhhhhhhhH-HH
Q 000124 272 -------DISVRASAADALEALSSKSIK-----------AK--KAV-VAADGVPVLIGAIVAPSKECMQGQRGQALQ-GH 329 (2138)
Q Consensus 272 -------d~~vr~~Aa~aL~nLs~~s~e-----------~R--k~i-~e~ggL~~LI~LL~s~s~e~mq~~~~~alq-e~ 329 (2138)
+...++.|.++|.|++.+... .| ..+ ...|+++.++..+..+... .+ .+. .+
T Consensus 289 e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~-~~-----~i~~~~ 362 (2102)
T PLN03200 289 EFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAES-TR-----AFDPTV 362 (2102)
T ss_pred hhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhh-hh-----hccccc
Confidence 234689999999999885222 11 111 1236666666655443211 00 000 12
Q ss_pred HHHHHHHhhcCchhHHHHhhhhcCCCCch---hhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhH
Q 000124 330 ATRALANIYGGMPALVVYLGELSQSPRLA---APVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKL 406 (2138)
Q Consensus 330 Al~ALanIsGgis~LI~~L~elL~~~~ss---~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~ 406 (2138)
+.++|.+++ ++++.. +.+..++..+. .+...+..+.+.+.++.|+.|+...+.+
T Consensus 363 v~~~LV~Ll--------------r~k~p~~vqe~V~eALasl~--------gN~~l~~~L~~~daik~LV~LL~~~~~e- 419 (2102)
T PLN03200 363 IEQILVKLL--------------KPRDTKLVQERIIEALASLY--------GNAYLSRKLNHAEAKKVLVGLITMATAD- 419 (2102)
T ss_pred cHHHHHHHh--------------CCCCCchhHHHHHHHHHHhc--------CChHHHHHHHhccchhhhhhhhccCCHH-
Confidence 334454444 332221 12223222211 1122234455667789999999998875
Q ss_pred HHHHHHHHHHHhhcC-chhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcC
Q 000124 407 VQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n-~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s 485 (2138)
+|..++.+|..++.+ .+.+..+.+.++++.|+.+|.+++...|+.++..|++++..+++++..|.+.|+||+|+++|++
T Consensus 420 vQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s 499 (2102)
T PLN03200 420 VQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET 499 (2102)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 999999999999855 6888999999999999999999999999999999999999888889999999999999999999
Q ss_pred CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChh----------------
Q 000124 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED---------------- 549 (2138)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~---------------- 549 (2138)
++..+|+.|+++|+|++.+.++.+..+.+.|++++|+++|++++++.++.++++|.+|..+.+.
T Consensus 500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~ 579 (2102)
T PLN03200 500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPE 579 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChh
Confidence 9999999999999999986666777777899999999999999999999999999999642211
Q ss_pred ---------------------HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHH
Q 000124 550 ---------------------IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLAL 600 (2138)
Q Consensus 550 ---------------------~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~L 600 (2138)
.+......|+++.|+++++++++.+++.|+++|.+++... ..+++++++.+
T Consensus 580 ~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L 659 (2102)
T PLN03200 580 SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 1111224689999999999999999999999999998653 35789999999
Q ss_pred hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCC
Q 000124 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEI 680 (2138)
Q Consensus 601 L~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~Ga 680 (2138)
|..++.+++..++++|++++..... ..+..+.+.|++++|+.++++++.++++.|+.+|.||+. +++.+..+.+.|+
T Consensus 660 Lss~~~~v~keAA~AL~nL~~~~~~--~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~-~~e~~~ei~~~~~ 736 (2102)
T PLN03200 660 LTNNTEAVATQSARALAALSRSIKE--NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS-DPEVAAEALAEDI 736 (2102)
T ss_pred HhcCChHHHHHHHHHHHHHHhCCCH--HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc-CchHHHHHHhcCc
Confidence 9999999999999999999864332 223345789999999999999999999999999999999 7888999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHH--HHHHHHHHhhC-----
Q 000124 681 VNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAE--TAVAALANLLS----- 753 (2138)
Q Consensus 681 V~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~--eAl~ALaNLa~----- 753 (2138)
+++|+++|++|++.+|++|+++|.+|+.+.+.++.....+...|++.+|+++|+..+.+... +|+.+|.+|+.
T Consensus 737 I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~ 816 (2102)
T PLN03200 737 ILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGA 816 (2102)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999997776555777889999999999999998877666 49999999965
Q ss_pred ---CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCC--chhhhhhhhh-hhhHHHHHHhhc-------
Q 000124 754 ---DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--GDVLKGNAQC-RFVVLTLVDSLN------- 820 (2138)
Q Consensus 754 ---~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~--~d~i~~~i~~-~gav~~LV~LL~------- 820 (2138)
+|.+...+..++.+.+|++++.+++|.++++|.++|.+||.++|. ++.+.....| .....+.++.-+
T Consensus 817 ~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (2102)
T PLN03200 817 NFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGG 896 (2102)
T ss_pred CCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecc
Confidence 356778888999999999999999999999999999999999987 6666665555 555666655433
Q ss_pred ------cCCCCchhHHHHHHHHHHHhh----------cc-------------------------cCCcccCCcccccccC
Q 000124 821 ------AMDMNGTDVADALEVVALLAR----------TK-------------------------QGLNFTYPPWAALAEV 859 (2138)
Q Consensus 821 ------s~~~~~~~~~~AL~ALa~La~----------~~-------------------------~~~~~i~~~~~~~~~~ 859 (2138)
..+++.+...++++..+++.. .+ +.+....|....+...
T Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (2102)
T PLN03200 897 TALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTV 976 (2102)
T ss_pred hhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchH
Confidence 567777888888887666541 00 1111223566777778
Q ss_pred CCchHHHHHhhhcCChH--HHHHHHHHHHHhhccCCc-hhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHH-----
Q 000124 860 PSSIEPLVCCLAEGPPP--LQDKAIEILSRLCGDQPA-VLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI----- 931 (2138)
Q Consensus 860 ~~~L~~Lv~ll~~~~~~--vq~~AieiL~~L~~~~~~-~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i----- 931 (2138)
+.|+..+++...++++. +..+|+++|.+.+..+.+ +|++|+++++.||++|+++|+||+.+.+|.++||+.|
T Consensus 977 a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~ 1056 (2102)
T PLN03200 977 ALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLAN 1056 (2102)
T ss_pred HHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHh
Confidence 89999999999999988 699999999998887755 9999999999999999999999999999999999999
Q ss_pred ------HhcccchhhHHHHH----------------------hhcCCcHHHHHHHHHHhhhhccCCCCC-----------
Q 000124 932 ------CAAKEHKKQSMDAL----------------------DLSGYLKPLIYALVDMMKQNSSCSSLD----------- 972 (2138)
Q Consensus 932 ------~a~k~~~~~~~~~L----------------------~~~g~~~~~i~~Lv~l~~~~~~~~~~d----------- 972 (2138)
.+||||++|+|+|| +++||+++|+++|++|++||+++++||
T Consensus 1057 ~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~ 1136 (2102)
T PLN03200 1057 LLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVE 1136 (2102)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhh
Confidence 78999999999988 899999999999999999999999999
Q ss_pred -cccccCCCccccccccccccCCcCCCCccchhhHHHHHHHHHhccCCCCcchheeccchHHHHHHhhccCCCCcccccc
Q 000124 973 -IEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFED 1051 (2138)
Q Consensus 973 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~e~ 1051 (2138)
||+ |+|+|+.||.++|+++|+|+|++.++.||..|..|+.+++.||..|+|+|++|+|++++ ++.++++.+.
T Consensus 1137 ~ir~----~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvL---Sl~~s~s~e~ 1209 (2102)
T PLN03200 1137 DIRV----GATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYL---SLGPQDSTEE 1209 (2102)
T ss_pred hhcc----hHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHH---HhcCccchhH
Confidence 666 99999999999999999999999999999999999999999999999999999999999 5667777777
Q ss_pred chhhhHHHHHHHHHccCCccccchhhhchHHHHHHHhcchhhhhHHHHHHHHHHhhhcCCcchhHHhhhcccchhhhhhh
Q 000124 1052 TEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLI 1131 (2138)
Q Consensus 1052 ~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (2138)
+ +.++|+|||.+++.+++.++.+++++|+.+||+|++..||.||++
T Consensus 1210 a-----~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~a----------------------------- 1255 (2102)
T PLN03200 1210 A-----ASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARA----------------------------- 1255 (2102)
T ss_pred H-----HHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHH-----------------------------
Confidence 7 999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhhhhhhhhhhccCCcHHHHHhhhcccccccchhhhhhhhHHHHhccCCCCCCCChhHHHHHHHHhhcCCCc
Q 000124 1132 GHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDT 1211 (2138)
Q Consensus 1132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lf~~~~ir~~~~a~~~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~ 1211 (2138)
|++||+.|++|....|++||||||+||+.+.++.+. .++.+|++|..|+.+
T Consensus 1256 ---------------------------L~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~--~a~~ALvkL~kd~is 1306 (2102)
T PLN03200 1256 ---------------------------LQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQH--AAIGALIKLSSGNPS 1306 (2102)
T ss_pred ---------------------------HHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhH--HHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999888 999999999999999
Q ss_pred chhHH--hhcchhHHHHHHhcCCCCcccHHHHHHHHHHhhcCcccccchhhhhhHHHHHHHHHcCCCchHhHHHHHHhhh
Q 000124 1212 NKLIM--AEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL 1289 (2138)
Q Consensus 1212 ~~~~~--~e~~~l~~l~k~ls~~~~~~~~~~~~~l~~~lf~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l 1289 (2138)
++..| +|+|+|+.++||||.+|++++|+++++||++||+|+++|..+.+.+||.+||.+|..+++.+.+.|.++|++|
T Consensus 1307 ~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~L 1386 (2102)
T PLN03200 1307 KALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL 1386 (2102)
T ss_pred hHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 99999 6999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred cccccccchHhhcCcchhHHHhhcccchhHHHHHHHHHHhhccCCCccccchhhcccchHHHHHHHhccCCcHHHHHHHH
Q 000124 1290 FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAA 1369 (2138)
Q Consensus 1290 ~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~al~kl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~a 1369 (2138)
++.|+.|+..++|+++.|+|.++.++++..+|.|++||+|+ +++++.++.+||++|+++.+|.+|+. ||.++|+.++
T Consensus 1387 c~~eegre~~~~h~a~vplV~~ilrvS~~a~E~AV~aL~kl--~~~~~~v~~Emv~~G~~~kllllLQ~-c~~~lkekAa 1463 (2102)
T PLN03200 1387 LDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKL--GKDRPPCKLDMVKAGIIERVLDILPE-APDSLCSAIA 1463 (2102)
T ss_pred hcCHhhHHHHHHcCChhhHHHHHHcCCHHHHHHHHHHHHHH--hCCChHHHHHHHHhCHHHHHHHHHHc-CCHHHHHHHH
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999 9999999999
Q ss_pred HHHHHHhcCcccccCccc---------------------------------------------cchhhhhhhhhcCChhH
Q 000124 1370 ELCFIMFGNAKIIANPIA---------------------------------------------SECIQPLISLMQSDLSI 1404 (2138)
Q Consensus 1370 ~l~~~l~~~~~i~~~~~a---------------------------------------------~~~~~pli~l~~s~~~~ 1404 (2138)
||||+|+||+.|+++|+| ++.|+|||+||+|+++.
T Consensus 1464 eLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~i~~Li~lL~s~~~~ 1543 (2102)
T PLN03200 1464 ELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQA 1543 (2102)
T ss_pred HHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcchhhhhhcCccchHHHHHHHHcCCcHH
Confidence 999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchhhhhHhhccccchhHHHHHHHHHHHhhcCCCchhHHHHhhhhHhHHhhhC---
Q 000124 1405 VVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLL--- 1481 (2138)
Q Consensus 1405 ~~~~~~~~~~~ll~~e~~~~~~~~~~~v~~lv~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~g~i~~~~~~~--- 1481 (2138)
+||.++++|+||+..|+||+++.+++||.|||+++++++.++||+|++||++++..||| +++++|||++++|++
T Consensus 1544 vqe~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~~~w~~---~v~~~ggv~~l~~~~~~~ 1620 (2102)
T PLN03200 1544 VQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESISLSWPK---AVADAGGIFELSKVILQA 1620 (2102)
T ss_pred HHHHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHHHhhcccHH---HHHHccCHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred -CCCchhHHHHHHHHHHhhhccchhccCccchhccchhhhhhhCCCcCchhHHHHHHHHHHhhcCCccccccccCcccch
Q 000124 1482 -PVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVI 1560 (2138)
Q Consensus 1482 -~~~p~~l~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~al~~l~~~~e~~~~~~~~~~~~~~~i 1560 (2138)
||+|+.||+++|.|| +|+++++++|||+|++.++|+|.+++.|+||.+|+++|. ++|+.|+++++.|+++|+|
T Consensus 1621 d~~~~~~l~~~a~~vl-----~n~~~~~~~~~~~v~~~~lvkl~~s~~e~~~~~a~~~l~-~~~~~d~~~~~~~~~~g~i 1694 (2102)
T PLN03200 1621 DPQPPHALWESAASVL-----SNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALL-VLERDDSSSAEQMAESGAI 1694 (2102)
T ss_pred CCCCchhhHHHHHHHH-----HHHhccCceeEEEeeHHHHHHHHhccchhHHHHHHHHHH-HHHhcchhHHHHHHHhhhH
Confidence 999999999999999 999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHhcccccccchhhhhhhhhhHHHh--------------h--ccch-----------
Q 000124 1561 EPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLA--------------G--IGIL----------- 1613 (2138)
Q Consensus 1561 ~~l~~~l~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~a~~pl~~~~--------------~--~~~~----------- 1613 (2138)
|+|+++||| |||||+++||||.||||+|+|++|+|||||+||+|.. . .|=+
T Consensus 1695 ~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1772 (2102)
T PLN03200 1695 EALLELLRS--HQCEEAAARLLEALFNNVKVREMKATKYAIAPLSQYLLDPQTRSQQARLLAALALGDLFQHEGLARSTD 1772 (2102)
T ss_pred HHHHHHHHh--ccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHHHHhcCcccccHHHHHHHHHHhccchhhhhhhhccC
Confidence 999999999 9999999999999999999999999999999999853 1 1211
Q ss_pred ------------------hhHHHHHHHHHHH---hhhhhhHHhhcCCceeeeheecccCCCCC-------------h---
Q 000124 1614 ------------------NLQQTAVKALEKI---STSWPKAVADAGGIFEIAKVIIQDDPQPP-------------H--- 1656 (2138)
Q Consensus 1614 ------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--- 1656 (2138)
..|--||-||++. |.+=-++||++|||.-+-..+.-.||+-. |
T Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1852 (2102)
T PLN03200 1773 AVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQAALLIKLLFSNHTIQ 1852 (2102)
T ss_pred cHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHHHHHHHHHHHccchHH
Confidence 1233456666654 55666899999999988777877777643 2
Q ss_pred -----------------hhHHhHH----------HHHhhhhccCccceeechHHHHHHHhhhhhhhhHHHHhhhHhhhcc
Q 000124 1657 -----------------SLWESAA----------LVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHER 1709 (2138)
Q Consensus 1657 -----------------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1709 (2138)
+||-++. .++.|.=|+...---+.-++-||--|.|+.|.+=--||++|..+-.
T Consensus 1853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1932 (2102)
T PLN03200 1853 EYASSELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALKSGSEAAQEAALDTLFLLRQ 1932 (2102)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcCccccccchHHhhHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 4565554 3455543333333344567889999999999999999999988765
Q ss_pred cCcC------hHHHHHHhhhHHHHHHHHhhc--ccchhHHhHHHHHhcccccccccc
Q 000124 1710 TDAS------SAEQMTQAGVIDALLDLLRSH--QCEETSGRLLEALFNNGRIRQMKV 1758 (2138)
Q Consensus 1710 ~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1758 (2138)
+=+. -++.|+-+-||--|--|.|+- +-.|-+.-|+|-|.-.-+||=.+.
T Consensus 1933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~V~V~~a 1989 (2102)
T PLN03200 1933 SWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAESLLQCLPGSLTVTIKRG 1989 (2102)
T ss_pred hhccCcHHHHHHHHHHHhhhhHHHHHHHHhCCccHHHHHHHHHhhCCcceEEEEeec
Confidence 5444 366788888888887788872 224778889998887776664443
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-27 Score=293.13 Aligned_cols=414 Identities=19% Similarity=0.211 Sum_probs=349.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhhc--cchhhHHhhhchhHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchhHH
Q 000124 434 KKVLIGLITMATADVREYLILSLTKLCRR--EVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 434 I~~LV~LL~sss~evq~~Aa~aL~~Ls~~--s~~~~~~I~e~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
...++..+.+.+...|..+...++.+... ++.....| ..|.+|.+++.+. ..++.+|..|+|+|.|++.+..+...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi-~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVI-QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHH-HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 45567777888888899999888877654 23334444 5599999999997 55689999999999999998888889
Q ss_pred HHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh-hHHHHHHHHHHHHHHhh
Q 000124 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-KGQDASAMALTKLIRAA 589 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~-evq~~Aa~AL~nLs~~~ 589 (2138)
.++++|++|.+++++.+++..++++|.|+|+|++.++...|..+.+.|++++|+.++...++ ...+++.|+|.||++..
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999887776 78899999999999763
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcCh
Q 000124 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ 669 (2138)
Q Consensus 590 e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~ 669 (2138)
+ ..+. -+.++ ..++.|..++++.++++...|+|++.+|+.+..
T Consensus 227 ~-------------P~P~------------------~~~v~------~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 227 N-------------PSPP------------------FDVVA------PILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred C-------------CCCc------------------HHHHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 2 1111 11222 258999999999999999999999999999899
Q ss_pred hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh-cCCHHHHHHHHHHH
Q 000124 670 DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-TSSIDAAETAVAAL 748 (2138)
Q Consensus 670 e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~-s~s~~Vr~eAl~AL 748 (2138)
+....+++.|+++.|+.+|...+..++..|.++++|+..+. |.+.+.+++.|+++.|..++. +....++++|++++
T Consensus 270 e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~---d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 270 EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS---DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc---HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999998743 378899999999999999999 45566999999999
Q ss_pred HHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCch
Q 000124 749 ANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGT 827 (2138)
Q Consensus 749 aNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~ 827 (2138)
.|++. +++....+++.|.+|.|+++|..++.++|++|+|+++|++.... .+....+...|.++++.++|...+. +
T Consensus 347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~--~ 422 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDV--K 422 (514)
T ss_pred HHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCCh--H
Confidence 99976 66778899999999999999999999999999999999998754 4455566778899999999954433 3
Q ss_pred hHHHHHHHHHHHhhcccCCcccC-CcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccC
Q 000124 828 DVADALEVVALLARTKQGLNFTY-PPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 828 ~~~~AL~ALa~La~~~~~~~~i~-~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~ 892 (2138)
....++.++.++-...+....-. ..+....+..++++.+..+..+++..+..+|..++.+++.++
T Consensus 423 ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 423 IILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 48888999988875322111100 344445567788999999999999999999999999999865
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.4e-27 Score=271.88 Aligned_cols=432 Identities=19% Similarity=0.188 Sum_probs=362.7
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhH
Q 000124 430 HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSK 509 (2138)
Q Consensus 430 e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r 509 (2138)
..+..++...++.+.++.+|..+..++++++-+ .+++..|++.+|+.+|+.-+.++...+|..++.+++||+.. +++|
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn-~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk 160 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVN-MENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNK 160 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceec-cCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccch
Confidence 345677888899999999999999999999988 57888899999999999988888889999999999999985 8899
Q ss_pred HHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh
Q 000124 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA 589 (2138)
Q Consensus 510 ~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~ 589 (2138)
..+...|++.+|.++-++.+..+|+++.++|.|++. ..++|+.++..|++|.|+.+++++++++|+.++.+++|++-+.
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH
Confidence 999999999999998888999999999999999986 7788888899999999999999999999999999999997431
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhc--ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000124 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA--ANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2138)
Q Consensus 590 e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~--~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~ 667 (2138)
.+ ++.+. ++..+++|+.++.++++.+|-.|..+|.||++
T Consensus 240 ---------------------~~-----------------Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas- 280 (550)
T KOG4224|consen 240 ---------------------RA-----------------RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS- 280 (550)
T ss_pred ---------------------HH-----------------HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-
Confidence 11 11122 23479999999999999999999999999998
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCC-HHHHHHHHH
Q 000124 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSS-IDAAETAVA 746 (2138)
Q Consensus 668 ~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s-~~Vr~eAl~ 746 (2138)
+.+....+++.|.+|.+++++++..-........|+.|++. .+ .+..-|.+.|+++||+.+|..++ ++++-.|..
T Consensus 281 dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi--hp--lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 281 DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI--HP--LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc--cc--CcccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 88999999999999999999988877777788899999986 33 56667899999999999999855 569999999
Q ss_pred HHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCC
Q 000124 747 ALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMN 825 (2138)
Q Consensus 747 ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~ 825 (2138)
+|.||+. +...+..|.+.|++|++..++.++.-.+|.....|++.|+.+ +..+......|.++.|+..+.+. .
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~----d~~k~~lld~gi~~iLIp~t~s~--s 430 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN----DNDKEALLDSGIIPILIPWTGSE--S 430 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc----cccHHHHhhcCCcceeecccCcc--c
Confidence 9999998 566788899999999999999999999999999999999986 44555666678888888888544 4
Q ss_pred chhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccc
Q 000124 826 GTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSS 905 (2138)
Q Consensus 826 ~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~ 905 (2138)
...+-.|+.+|+++++..+...+..-+|.... .+--..|.+++.+..-.+++-|.-.+..+..++..++..|+.+...
T Consensus 431 ~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~--~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~~~~~~i~~~dd 508 (550)
T KOG4224|consen 431 EEVRGNAAAALINLSSDVEHYARVIEAWDHPV--QGIQGRLARFLASHELTFRHIARWTIQQLLEDHDLPLTAFIQSSDD 508 (550)
T ss_pred hhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc--hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCccHHHHHhCchh
Confidence 45588999999999976544333333343222 2223456677777777789999999999999987789999988777
Q ss_pred cHHHHHHHHhc
Q 000124 906 SIGALADRIMH 916 (2138)
Q Consensus 906 ~i~~La~~il~ 916 (2138)
-| .+++.++.
T Consensus 509 ii-~~~~~~~~ 518 (550)
T KOG4224|consen 509 II-ELLNDIVA 518 (550)
T ss_pred HH-HHHHHHHH
Confidence 76 56666553
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=2.5e-26 Score=262.91 Aligned_cols=416 Identities=16% Similarity=0.181 Sum_probs=341.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhh-ccchhhHHhhhchhHHHHHHHh-cCCchhhHHHHHHHHHHHhhcCchhHHHH
Q 000124 435 KVLIGLITMATADVREYLILSLTKLCR-REVGIWEAIGKREGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2138)
Q Consensus 435 ~~LV~LL~sss~evq~~Aa~aL~~Ls~-~s~~~~~~I~e~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I 512 (2138)
+-|..-+-+.+.+.|..+..-++.+-+ ....--..+++.|.+|.+++++ +....-.+..|+|+|.|+++........+
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 344455556677788888877776544 3233345566899999999999 45566678899999999999777777778
Q ss_pred HhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh--hHHHHHHHHHHHHHHhhc
Q 000124 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP--KGQDASAMALTKLIRAAD 590 (2138)
Q Consensus 513 ~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~--evq~~Aa~AL~nLs~~~e 590 (2138)
++.|++|.++++|.+++.++++++.|+|+|++-+++..|..+.+.|++.+++.++.+..+ ...+++.|+|.||++..+
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 899999999999999999999999999999999999999999999999999999988766 678999999999986522
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh
Q 000124 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2138)
Q Consensus 591 ~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e 670 (2138)
..++- ..+. .+++.|..++.+.++++.-.|+|++..|+.+..+
T Consensus 234 -------------P~P~w------------------~~is------qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E 276 (526)
T COG5064 234 -------------PPPDW------------------SNIS------QALPILAKLIYSRDPEVLVDACWAISYLSDGPNE 276 (526)
T ss_pred -------------CCCch------------------HHHH------HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHH
Confidence 11110 0111 2488888999999999999999999999998899
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000124 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2138)
Q Consensus 671 ~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaN 750 (2138)
....+.+.|..+.|+++|.+.+..++..|.+.++|+..+. |.+.+.++.+|+++.+..+|.++...++++||+++.|
T Consensus 277 ~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~---D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSN 353 (526)
T COG5064 277 KIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS---DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISN 353 (526)
T ss_pred HHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC---ccceehheecccHHHHHHHhcChhhhhhhhhheeecc
Confidence 9999999999999999999999999999999999998743 3677889999999999999999999999999999999
Q ss_pred hhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhH
Q 000124 751 LLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDV 829 (2138)
Q Consensus 751 La~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~ 829 (2138)
+.. +.+..+.+++.+.+|+|+++|...+-.+|+.|||++.|.........++.+...++|.+++|.++|...+... .
T Consensus 354 ITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki--i 431 (526)
T COG5064 354 ITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI--I 431 (526)
T ss_pred cccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc--h
Confidence 965 6677788999999999999999999999999999999998876555667777888999999999997554432 4
Q ss_pred HHHHHHHHHHhhcccC----CcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccC
Q 000124 830 ADALEVVALLARTKQG----LNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 830 ~~AL~ALa~La~~~~~----~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~ 892 (2138)
.-++.++.+.-+-.+. ..+-.+.....-+.++.++.+..|..+.+..+.++|..|+.+++++.
T Consensus 432 ev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee 498 (526)
T COG5064 432 EVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE 498 (526)
T ss_pred hhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence 5557777766542111 00101122333345788999999999999999999999999999765
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-25 Score=276.57 Aligned_cols=396 Identities=17% Similarity=0.228 Sum_probs=341.3
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcC---chhHHHHhhhchHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhH
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGN---IFLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWE 468 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n---~~~~~~L~e~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~ 468 (2138)
+.++..+.+.+.. .+..+..++..+... +.+...+.. |.++.++..+.. .++.+|..|+++|.++++++.+.-.
T Consensus 69 ~~~~~~~~S~~~~-~q~~a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 69 ELMLAALYSDDPQ-QQLTATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred HHHHHHHhCCCHH-HHHHHHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 3444555555544 577777777777543 445555555 899999999974 5599999999999999999888888
Q ss_pred HhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCH-HHHHHHHHHHHHHhcCC
Q 000124 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQ-KAREVAAHVLWILCCHS 547 (2138)
Q Consensus 469 ~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~-~vre~Aa~aL~nLs~~s 547 (2138)
.+++.|.+|.+++++.+++..+++.|+|+|+|++.+++..|..+...|++++|+.++...+. ...+.+.|+|.||+.+.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999988765 78899999999999977
Q ss_pred hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000124 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2138)
Q Consensus 548 d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~L 619 (2138)
+....+-.-..++|.|..++++.++++...++|+|.+|+..+ +.+.++.|+++|...+..++..+.+++|++
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 543333334678999999999999999999999999999653 467899999999999999998899999986
Q ss_pred HhhhcchHHHHhhhcccchhhHHHHhhc-CCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000124 620 LTMALQEDLVQKGSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2138)
Q Consensus 620 a~~~~~~d~v~~~l~~~GaI~aLV~LLk-s~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~ 698 (2138)
. ...|.....+...|+++.|..++. +..+.+|..|+|++.||+.++++...++.+.|.++.|+.+|..++-+.|++
T Consensus 307 v---tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 307 V---TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE 383 (514)
T ss_pred e---eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence 4 445555666889999999999998 456669999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC------C---chHHHHHHhcCcHHH
Q 000124 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS------D---PDIAAEVLLEDVVSA 769 (2138)
Q Consensus 699 AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~------~---~e~r~~Ii~~g~L~~ 769 (2138)
|+||+.|++.+... ++-..+++.|+|++|+++|...+.++...++.+|.|+.. . ......|.+.|++.+
T Consensus 384 AawaIsN~ts~g~~--~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 384 AAWAISNLTSSGTP--EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHHHhhcccCCH--HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence 99999999985444 677789999999999999988999998899999999943 1 445677899999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 770 LTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 770 LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
+..+-.+.+.++..+|...+.+.-..
T Consensus 462 iE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 462 IENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999877664
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5e-26 Score=262.32 Aligned_cols=394 Identities=22% Similarity=0.235 Sum_probs=340.9
Q ss_pred hHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHH
Q 000124 390 QIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEA 469 (2138)
Q Consensus 390 ~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~ 469 (2138)
..++++ .++.+.+.. ++..+..++++++-+.+++..+.+..|+.+|+.-+-....++|..++.++.+++.- ++++..
T Consensus 86 s~epvl-~llqs~d~~-Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~k 162 (550)
T KOG4224|consen 86 SNEPVL-ALLQSCDKC-IQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVK 162 (550)
T ss_pred hhhHHH-HHHhCcchh-hhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhh
Confidence 333444 455555554 88889999999998888888888889999998888888899999999999999988 688999
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChh
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED 549 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~ 549 (2138)
|...|++.++.++-++++..+|.++..+|.|++. +.++|..++.+|++|.||.++++++.++|..++.++.|++. ...
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~ 240 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRR 240 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHH
Confidence 9999999999999999999999999999999997 78999999999999999999999999999999999999998 456
Q ss_pred HHHHHHHcC--CcchhhhccccCChhHHHHHHHHHHHHHHhh-------chhhHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 000124 550 IRACVESAG--AVPAFLWLLKSGGPKGQDASAMALTKLIRAA-------DSATINQLLALLLGDSPSSKAHVIKVLGHVL 620 (2138)
Q Consensus 550 ~r~~I~e~G--aI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~-------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La 620 (2138)
.|+.+++.+ .++.|+.++.++++.++-.|..+|.|++.+. +.+.+|.+++|+++..-..-....-|+++++
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnis 320 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNIS 320 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcc
Confidence 677777777 9999999999999999999999999999774 4688999999998765444344455676665
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHH
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQS 699 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~A 699 (2138)
-..-+ ...+.++|++++||.++..+ ++++|-.|...|+||+.+...++..+.+.|+++.|..++.|+.-.++..-
T Consensus 321 ihplN----e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 321 IHPLN----EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred cccCc----ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence 32111 22478899999999999987 56799999999999998888899999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHh------cCcHHHHHHH
Q 000124 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLL------EDVVSALTRV 773 (2138)
Q Consensus 700 A~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~------~g~L~~LV~L 773 (2138)
..|+..|+. . |..|..+.+.|+++.|+.+..+.+.+++.+|+.+|.||+.+.+.-..+++ +|.-..|+++
T Consensus 397 sac~a~Lal--~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rf 472 (550)
T KOG4224|consen 397 SACIAQLAL--N--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARF 472 (550)
T ss_pred HHHHHHHHh--c--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 999999986 3 36788899999999999999999999999999999999998776544432 5666788999
Q ss_pred HhCCCHHHHHHHHHHHHHhhhcC
Q 000124 774 LAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 774 L~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
+.+....++.-+.|.+.+|..+.
T Consensus 473 l~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 473 LASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.91 E-value=2.5e-23 Score=238.40 Aligned_cols=398 Identities=16% Similarity=0.178 Sum_probs=322.7
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhc---CchhHHHHhhhchHHHHHHHHc-cCCHHHHHHHHHHHHHhhhccchhhH
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYG---NIFLSQWVSHAEAKKVLIGLIT-MATADVREYLILSLTKLCRREVGIWE 468 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~---n~~~~~~L~e~~gI~~LV~LL~-sss~evq~~Aa~aL~~Ls~~s~~~~~ 468 (2138)
|-|..-+-+.+.+ .+..+..-+..+.+ ++.+ ..+...|+++.++.++. ....-.+-+|+++|.+++++....-.
T Consensus 74 p~lt~~l~SdDie-~q~qav~kFR~~LS~E~~PPI-q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 74 PQLTQQLFSDDIE-QQLQAVYKFRKLLSKETSPPI-QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred HHHHHHHhhhHHH-HHHHHHHHHHHHhccccCCCc-hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 3344334343333 44455554555433 2333 34567889999999995 45566788999999999998777777
Q ss_pred HhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCC--HHHHHHHHHHHHHHhcC
Q 000124 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGS--QKAREVAAHVLWILCCH 546 (2138)
Q Consensus 469 ~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d--~~vre~Aa~aL~nLs~~ 546 (2138)
.+++.|++|.++++|.+.+..+++.++|+|+|++..++..|..+...|++.+++.++.+.- -.+.+.+.|+|.||+..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 7889999999999999999999999999999999988999999999999999999998774 47789999999999885
Q ss_pred ChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHH
Q 000124 547 SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGH 618 (2138)
Q Consensus 547 sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~ 618 (2138)
...-...-.-..++|.|.+++.+.++++...|+|++.+++..+ +.+..+.|+++|..++..++.-+.+.+++
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN 311 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN 311 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence 4332222222457899999999999999999999999998664 35667889999999999999999999988
Q ss_pred HHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000124 619 VLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2138)
Q Consensus 619 La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~ 698 (2138)
+..- .|.....+...|+++.+-.+|.+..+.+|..|+|.+.|++.++.+....+++.+.+|+|+.+|...+-.+|++
T Consensus 312 IVTG---~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE 388 (526)
T COG5064 312 IVTG---SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE 388 (526)
T ss_pred eeec---CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 7543 3333455788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-----------Cc-hHHHHHHhcCc
Q 000124 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-----------DP-DIAAEVLLEDV 766 (2138)
Q Consensus 699 AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-----------~~-e~r~~Ii~~g~ 766 (2138)
|+||+.|...+...-++.-..++..|++.||.++|...+..+-+-++.++.|+.. ++ .....+.+.|+
T Consensus 389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Agg 468 (526)
T COG5064 389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGG 468 (526)
T ss_pred HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhccc
Confidence 9999999987433333555578899999999999998777777777888888743 11 12345667999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 767 VSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 767 L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
+..+..+-.+.+..+-.+|-.++...-..
T Consensus 469 md~I~~~Q~s~n~~iy~KAYsIIe~fFge 497 (526)
T COG5064 469 MDAIHGLQDSVNRTIYDKAYSIIEKFFGE 497 (526)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence 99999999999999999998888766543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=3.7e-17 Score=213.01 Aligned_cols=373 Identities=16% Similarity=0.153 Sum_probs=310.0
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCC
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~ 486 (2138)
+..-+...|.|++.+..+...+...+++++|++++.+++.+....++.+|.+++.. .+++..+.+.|.++.|.+++.++
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCC
Confidence 44566677999999999999999999999999999999999999999999999998 67899999999999999999999
Q ss_pred chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhc
Q 000124 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566 (2138)
Q Consensus 487 d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~L 566 (2138)
+...+..++++|.||+. +++.|..+++.|.+|.|+.+|.++ ..+..+..+|++|+. .+..|..+...++++.++++
T Consensus 344 ~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHH
Confidence 99999999999999999 688999999999999999999764 456778999999998 56788899999999999986
Q ss_pred cc-cCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccch
Q 000124 567 LK-SGGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKG 638 (2138)
Q Consensus 567 Lk-S~~~evq~~Aa~AL~nLs~~~e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~Ga 638 (2138)
+- .+++++.......+.|++.++. .+.++.|++......+ ......+++++.... ..+..+ .+.
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~---~~k~~f--~~~ 491 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDG---PLKELF--VDF 491 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCc---hHHHHH--HHH
Confidence 54 4567777788899999987742 3567777777655433 234567788775432 122222 346
Q ss_pred hhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCCcccc
Q 000124 639 LRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--TQMVATQSARALGALSRPTKTKTT 715 (2138)
Q Consensus 639 I~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dg--s~~Vk~~AA~ALanLa~s~~~~d~ 715 (2138)
+..|+.++..+ +++..-.+.++|+||...+.+....+.+.+.++-+...|..+ .+++..++...++.++. . +.
T Consensus 492 i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d--~~ 567 (708)
T PF05804_consen 492 IGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--D--PE 567 (708)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--C--HH
Confidence 88888888765 778889999999999875555555566679999999999876 45788889999999886 2 25
Q ss_pred hhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCCchHHHHHHh-cCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 716 NKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLL-EDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 716 ~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~-~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
....+.+.|.++.|+.+|++ .|++..-+.+.++..|..+++.|..++. .+++..|+.++++.++++|+-|-.+|-=+
T Consensus 568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDII 647 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 66678899999999999987 5788899999999999999999998765 67888999999999999999999999877
Q ss_pred hhcC
Q 000124 793 LKHF 796 (2138)
Q Consensus 793 ~~~~ 796 (2138)
+...
T Consensus 648 ~e~d 651 (708)
T PF05804_consen 648 AEYD 651 (708)
T ss_pred HHhC
Confidence 7654
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.82 E-value=1.1e-16 Score=208.69 Aligned_cols=522 Identities=16% Similarity=0.151 Sum_probs=376.7
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhc---CCHHHHHHHHHHHHHhc
Q 000124 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS---GTPLAKVNVAATLSVLC 112 (2138)
Q Consensus 36 ~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks---~~~evr~~Aa~~L~~Ls 112 (2138)
.-+..+...||.+=. +..+|..+...+..|++.+++-..++.. .-.+.+|...|+. .+.+...+.+.+...+|
T Consensus 120 a~~~~~d~yiE~lYe---~~~ek~~~~~~il~La~~~~NL~~l~~n-e~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS 195 (708)
T PF05804_consen 120 ASINDLDEYIELLYE---DIPEKIRGTSLILQLARNPENLEELVQN-ETLMSALARVLREDWKKSVELATNIIYIFFCFS 195 (708)
T ss_pred CCHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCcchHHHHHHh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 345677888888743 3456888889999999999777777765 6788999999976 36788889999998888
Q ss_pred cCchhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhH
Q 000124 113 KDEDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVV 190 (2138)
Q Consensus 113 ~~e~~r~~v~~~G~Ip~Lv~LL~se--d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V 190 (2138)
...+....+.+...-..-++++..+ -.+....-+......+.. .+..++.+-+ ....+-.++.. ++ .+
T Consensus 196 ~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~----~~~~~~~~~~--~~kk~~~l~~k---Qe-qL 265 (708)
T PF05804_consen 196 NFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEE----KPEAKKDYEK--ELKKLQTLIRK---QE-QL 265 (708)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc----chhhhhhHHH--HHHHHHHHHHH---HH-HH
Confidence 7777666666554434444555442 111111111111111110 1111111111 12333344432 23 35
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccC
Q 000124 191 QGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270 (2138)
Q Consensus 191 ~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~ 270 (2138)
...+...|.|++.+.... ..|.+.|+++.|+++|.+.+.++...++.+|.+|+ ...+++..+.+.|+++.|.+++.+
T Consensus 266 lrv~~~lLlNLAed~~ve-~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~m~~~giV~kL~kLl~s- 342 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPRVE-LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS-IFKENKDEMAESGIVEKLLKLLPS- 342 (708)
T ss_pred HHHHHHHHHHHhcChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHhcC-
Confidence 567889999999876444 67889999999999999999999999999999999 455678889999999999999985
Q ss_pred CCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhh
Q 000124 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGE 350 (2138)
Q Consensus 271 sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~e 350 (2138)
.+...+..+..+|.||+++ ++.|..++..|++|.|+.++.++. .+..++..|
T Consensus 343 ~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~-----------~~~val~iL---------------- 394 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN-----------FREVALKIL---------------- 394 (708)
T ss_pred CCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc-----------hHHHHHHHH----------------
Confidence 4568899999999999995 999999999999999999887654 222333333
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhh
Q 000124 351 LSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH 430 (2138)
Q Consensus 351 lL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e 430 (2138)
.+++.+++.+..+..
T Consensus 395 -----------------------------------------------------------------y~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 395 -----------------------------------------------------------------YNLSMDDEARSMFAY 409 (708)
T ss_pred -----------------------------------------------------------------HHhccCHhhHHHHhh
Confidence 333333444455566
Q ss_pred hchHHHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHh-cCCchhhHHHHHHHHHHHhhcCchh
Q 000124 431 AEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 431 ~~gI~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
.++++.++.++.. +++.++..++..+.+++.+ +.+...+.+.+|++.|++.. +..++ .....++|++.|.+..
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPL 484 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchH
Confidence 6778888886544 5566777888899999988 57778888889999988755 33332 2346899999976565
Q ss_pred HHHHHhcCCchHHHHHhhhC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccC--ChhHHHHHHHHHHHH
Q 000124 509 KWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG--GPKGQDASAMALTKL 585 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks~-d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~--~~evq~~Aa~AL~nL 585 (2138)
+..+. +.+..|+.++..+ +++....+.++|+||+..+......+.+.+.+|-|..++..+ .+++.-.++..++.+
T Consensus 485 k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 485 KELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred HHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 55443 4788888888776 788899999999999987667778888889999999988765 357888899999998
Q ss_pred HHhh-------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHH
Q 000124 586 IRAA-------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAA 658 (2138)
Q Consensus 586 s~~~-------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa 658 (2138)
+.++ +.+.++.|+.+|+...++ .+.+...+..+-....+++.....+.+.+++..|+.++++.+.++|..|-
T Consensus 563 a~d~~~A~lL~~sgli~~Li~LL~~kqeD-dE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d 641 (708)
T PF05804_consen 563 ASDPECAPLLAKSGLIPTLIELLNAKQED-DEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCD 641 (708)
T ss_pred HCCHHHHHHHHhCChHHHHHHHHHhhCch-HHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHH
Confidence 8764 357899999999753321 23344444444444555666666677788999999999999999999999
Q ss_pred HHHHHHhhcChhhhhhh
Q 000124 659 SVLADLFSMRQDICGSL 675 (2138)
Q Consensus 659 ~ALanL~s~~~e~r~~I 675 (2138)
.+|--++..+++-...+
T Consensus 642 ~~Ldii~e~d~~w~~ri 658 (708)
T PF05804_consen 642 NALDIIAEYDEEWAERI 658 (708)
T ss_pred HHHHHHHHhCHHHHHHh
Confidence 99998888666555444
No 11
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.68 E-value=9.7e-17 Score=168.26 Aligned_cols=113 Identities=19% Similarity=0.424 Sum_probs=100.9
Q ss_pred ceEEEEEecccccccc--------cCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecC
Q 000124 2010 GCLTVTIKRGNNLKQT--------MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~ 2081 (2138)
|+|.|+|++|.||... -|..||||++.+ ++..+||++++++.||+|||+|+|.+.++ .++.|.|+||+++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~-~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~ 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRV-GAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDED 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEE-CCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecC
Confidence 8999999999999532 267899999999 55777899999999999999999999765 6899999999999
Q ss_pred CCCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEe
Q 000124 2082 TFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIW 2129 (2138)
Q Consensus 2082 ~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w 2129 (2138)
.++.+.+|++.|++.++..+|....+|+|.+. ++|+.+ ++++|
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~--~~G~~~---~~~~~ 121 (121)
T cd08391 79 PDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV--KSGRLH---LKLEW 121 (121)
T ss_pred CCCCCcEEEEEEEHHHhcccCccceEEECcCC--CCceEE---EEEeC
Confidence 99778899999999999999999999999987 566665 99999
No 12
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.68 E-value=1.3e-16 Score=168.26 Aligned_cols=101 Identities=16% Similarity=0.322 Sum_probs=88.3
Q ss_pred ceEEEEEecccccccc-cCCCCceEEEEecCCCCcccccccc-CCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-c
Q 000124 2010 GCLTVTIKRGNNLKQT-MGTTNAFCRLTIGNGPPRQTKVVSH-SISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-S 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~-~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~ 2086 (2138)
|.|.|+|++|.|++.. +|+.||||++.+ ++.+.||||+++ +.||+|||+|+|.+.++ .+.|+|+|||++.||+ +
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~l-g~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRV-GHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERAFTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEE-CCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCCCcCCc
Confidence 8999999999999332 599999999999 555557999976 79999999999998753 5789999999999998 6
Q ss_pred ccceEEEEecceeecce-ecceeecCCC
Q 000124 2087 TLGKVTIQIDKVVTEGV-YSGLFNLNHD 2113 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~-~~~~~~l~~~ 2113 (2138)
.+|++.|+|.+.+.+|+ +.++|+|.+.
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~ 106 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGK 106 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCc
Confidence 89999999987777775 8999999886
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.67 E-value=3.3e-15 Score=190.57 Aligned_cols=420 Identities=20% Similarity=0.166 Sum_probs=301.5
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC
Q 000124 126 CIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205 (2138)
Q Consensus 126 ~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~ 205 (2138)
-+|..+.+|.+.++.++..|+.-|..+|.+ +...+..+-+-|+|+.|+.++.+.+ ..++.+|+++|+||.-+.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfg----d~~ik~~vrqlggI~kLv~Ll~~~~---~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFG----DNKIKSRVRQLGGIPKLVALLDHRN---DEVQRQACGALRNLVFGK 306 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhh----hHHHHHHHHHhccHHHHHHHhcCCc---HHHHHHHHHHHHhhhccc
Confidence 467888899998999999999999999983 6678899999999999999999877 459999999999999987
Q ss_pred Cc--hhHHHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccC---------C--
Q 000124 206 DG--YWRATLEAGGVDIIVGLLSS-DNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN---------N-- 271 (2138)
Q Consensus 206 e~--r~~aI~e~GGI~~Lv~lL~s-~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~---------s-- 271 (2138)
.. ++-.|.+++||+.+++.|.. .+.++++.+..+|+||+.. +.....+...++..|..-+-.. .
T Consensus 307 ~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~ 384 (717)
T KOG1048|consen 307 STDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRK 384 (717)
T ss_pred CCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCcccc
Confidence 76 88899999999999999986 5789999999999999954 3334444444555555443211 1
Q ss_pred --CHhHHHHHHHHHHHHhhcCHHHHHHHHh-cCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHH-H
Q 000124 272 --DISVRASAADALEALSSKSIKAKKAVVA-ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVV-Y 347 (2138)
Q Consensus 272 --d~~vr~~Aa~aL~nLs~~s~e~Rk~i~e-~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~-~ 347 (2138)
+..+-..+..+|+|+++.+.+.|+.+.+ .|.++.|+..+..-. ..+.+.+...++|+|.|.|++..+...++ .
T Consensus 385 ~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i---~~~~~d~K~VENcvCilRNLSYrl~~Evp~~ 461 (717)
T KOG1048|consen 385 AEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAI---QKSDLDSKSVENCVCILRNLSYRLEAEVPPK 461 (717)
T ss_pred cccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHH---HhccccchhHHHHHHHHhhcCchhhhhcCHh
Confidence 2456678999999999988999999988 688999999886411 12334444778999999999865543321 0
Q ss_pred hhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCC--CChhHHHHHHHHHHHHhhcCchhH
Q 000124 348 LGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKP--HDNKLVQERVLEAMASLYGNIFLS 425 (2138)
Q Consensus 348 L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s--~~~e~vr~~Aa~AL~~L~~n~~~~ 425 (2138)
....+.+... +.. ..... ...+ .+....+. .+.+.+ .+-....++...
T Consensus 462 ~~~~~~~~~~----------------~~~--~~~~~---~~~g---cf~~k~~k~~~~~~~~------~~pe~~~~pkG~ 511 (717)
T KOG1048|consen 462 YRQVLANIAR----------------LPG--VGPPA---ESVG---CFGFKKRKSDDNCDDL------PIPERATAPKGS 511 (717)
T ss_pred hhhHhhcccc----------------ccc--CCCcc---cccc---cccchhhhchhccccc------CCcccccCCCCc
Confidence 0000000000 000 00000 0000 00000000 000000 000011223344
Q ss_pred HHHhhhchHHHHHHHHc-cCCHHHHHHHHHHHHHhhhccc----hhhHHh-hhchhHHHHHHHhcCCchhhHHHHHHHHH
Q 000124 426 QWVSHAEAKKVLIGLIT-MATADVREYLILSLTKLCRREV----GIWEAI-GKREGIQLLISLLGLSSEQHQEYAVQLIA 499 (2138)
Q Consensus 426 ~~L~e~~gI~~LV~LL~-sss~evq~~Aa~aL~~Ls~~s~----~~~~~I-~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2138)
.++++...+++.+.++. +.+..+.+.++.+|.+++.... ..+..+ .++.|.+++++++..+++.+.+.++.+|+
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR 591 (717)
T ss_pred eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence 56777777887666665 4568889999999999987532 233334 77889999999999999999999999999
Q ss_pred HHhhcCchhHHHHHhcCCchHHHHHhhhC------CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcccc-CCh
Q 000124 500 ILTEQVDDSKWAITAAGGIPPLVQLLEAG------SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS-GGP 572 (2138)
Q Consensus 500 nLa~~s~e~r~~I~~aGaIp~LV~LLks~------d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS-~~~ 572 (2138)
||+. +..++..|- .++++.|++.|..+ +.++...++.+|.|+...+-.+.+.+.+.++++.|+.+.++ .++
T Consensus 592 Nls~-d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~ 669 (717)
T KOG1048|consen 592 NLSR-DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSP 669 (717)
T ss_pred hhcc-Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCH
Confidence 9998 566766554 78999999999754 37888999999999997777777778889999999998877 456
Q ss_pred hHHHHHHHHHHHHHHhh
Q 000124 573 KGQDASAMALTKLIRAA 589 (2138)
Q Consensus 573 evq~~Aa~AL~nLs~~~ 589 (2138)
...+.|...|..|....
T Consensus 670 k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 670 KEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888887663
No 14
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.66 E-value=2.5e-16 Score=164.95 Aligned_cols=115 Identities=20% Similarity=0.439 Sum_probs=98.8
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCCCcccccccc-CCCCCccccceeeecCCCCCCeEEEEEeecCCCCCc
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSH-SISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~ 2086 (2138)
|.|.|+|++|.|| .+..|+.||||++.+ .+..++|+++++ ++||.|||+|.|.+..+ .++.|.|+||+++.+|.+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~-~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRI-GGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDKRKPD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEE-CCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCCCCc
Confidence 8899999999999 556789999999999 567778999866 79999999999998765 679999999999998889
Q ss_pred ccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEe
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIW 2129 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w 2129 (2138)
.+|++.+++.+++..+....+|.|.+.....| .+.+++.|
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G---~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKGRYAG---EVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCCcEee---EEEEEEEC
Confidence 99999999999998888999999987633334 44477654
No 15
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.65 E-value=4.1e-16 Score=163.82 Aligned_cols=112 Identities=23% Similarity=0.408 Sum_probs=96.9
Q ss_pred eEEEEEecccccc--cccCCCCceEEEEecC--CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCc
Q 000124 2011 CLTVTIKRGNNLK--QTMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS 2086 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~ 2086 (2138)
+|+|+|++|+||. +..|..||||++.+++ +..+|||++++|+||+|||+|.|.+..+ ..++|.|+||++++++.+
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~~~~~ 79 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDYVMDD 79 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCCCCCc
Confidence 5899999999994 4468999999999964 3456799999999999999999999865 778999999999999889
Q ss_pred ccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEE
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
.+|++.+.++++..++++...|+|.+. +. +.+.|||.
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~--~~---g~l~~~~~ 116 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLNPQ--GK---EELEVEFL 116 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECCCC--CC---ceEEEEEE
Confidence 999999999999999999999999887 34 44446653
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.64 E-value=9.1e-15 Score=186.57 Aligned_cols=378 Identities=18% Similarity=0.193 Sum_probs=274.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCch--hHHH
Q 000124 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD--SKWA 511 (2138)
Q Consensus 434 I~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e--~r~~ 511 (2138)
.+-.+.++.+.++.+|.+|+..+.++|+.+...+..+.+.|||+.|+.++.+.+.+++..|+++|.||...+.. ++..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 44567778889999999999999999999888899999999999999999999999999999999999986654 8999
Q ss_pred HHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc
Q 000124 512 ITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD 590 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e 590 (2138)
+.+.++++.++++|+. .|.++++..+++|+||+.+ |..+..+. ..++..|.. -...+.
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~-------------------~vI~P~ 373 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTD-------------------NVIIPH 373 (717)
T ss_pred hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHH-------------------hhcccc
Confidence 9999999999999986 6999999999999999985 65555544 223333322 111110
Q ss_pred hhhH-HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC------CCHHHHHHHHHHHHH
Q 000124 591 SATI-NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS------SNEENQEYAASVLAD 663 (2138)
Q Consensus 591 ~~aI-~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks------~s~evre~Aa~ALan 663 (2138)
.++- ++.. -+..+..+...+..||++++.. ..+..+..-...|.|.+|+..+++ .+....|+++.+|.|
T Consensus 374 Sgw~~~~~~--~~~~~~~vf~n~tgcLRNlSs~--~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRN 449 (717)
T KOG1048|consen 374 SGWEEEPAP--RKAEDSTVFRNVTGCLRNLSSA--GQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRN 449 (717)
T ss_pred cccCCCCcc--cccccceeeehhhhhhccccch--hHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhh
Confidence 0000 0000 1111233444556666665432 233444444567888999887763 267788899999999
Q ss_pred HhhcCh--------------------------------hhhh---------------------hhhhCCCHHHHHHHhc-
Q 000124 664 LFSMRQ--------------------------------DICG---------------------SLATDEIVNPCMRLLT- 689 (2138)
Q Consensus 664 L~s~~~--------------------------------e~r~---------------------~Ive~GaV~~Lv~LL~- 689 (2138)
|...-. ..++ .+....+|.+-+.++.
T Consensus 450 LSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~ 529 (717)
T KOG1048|consen 450 LSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL 529 (717)
T ss_pred cCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH
Confidence 875211 0000 0222334555455554
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCc-ccchhhhH-HhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcH
Q 000124 690 SNTQMVATQSARALGALSRPTKT-KTTNKMSY-IAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVV 767 (2138)
Q Consensus 690 dgs~~Vk~~AA~ALanLa~s~~~-~d~~r~~I-~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L 767 (2138)
+.++.+.+.++.||.|++.+... .+..+..+ .++.+.++|+++|+.++++|...++.+|.||+.|+.++..|. .+++
T Consensus 530 s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~ 608 (717)
T KOG1048|consen 530 SKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAI 608 (717)
T ss_pred hcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchH
Confidence 45778899999999999984433 23455555 788899999999999999999999999999999999998887 7899
Q ss_pred HHHHHHHhCCC------HHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 768 SALTRVLAEGT------SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 768 ~~LV~LL~~~~------~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
+.|+++|.+.. +++-..++..|.|+...+ -....+....+++++|+.+..+ ..+......|-..|..|-.
T Consensus 609 ~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~---~~nAkdl~~~~g~~kL~~I~~s-~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 609 PDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN---VLNAKDLLEIKGIPKLRLISKS-QHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh---HHHHHHHHhccChHHHHHHhcc-cCCHHHHHHHHHHHHHHHH
Confidence 99999998763 578889999999999764 3344455567789999999976 4444555566556665543
No 17
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.63 E-value=4.6e-16 Score=163.75 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=92.4
Q ss_pred ceEEEEEecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcccc
Q 000124 2010 GCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLG 2089 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g 2089 (2138)
|.|.|+|++|.||+++ |+.||||+|.++ +.+.+|++++++ ||+|||+|.|.++++ ++.|+|+||||+.++.|.+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~-~~~dPYV~Ik~g-~~k~kT~v~~~~-nP~WnE~F~F~~~~~--~~~L~v~V~dkd~~~DD~lG 76 (127)
T cd08394 2 SLLCVLVKKAKLDGAP-DKFNTYVTLKVQ-NVKSTTIAVRGS-QPCWEQDFMFEINRL--DLGLVIELWNKGLIWDTLVG 76 (127)
T ss_pred ceEEEEEEEeeCCCCC-CCCCCeEEEEEC-CEEeEeeECCCC-CCceeeEEEEEEcCC--CCEEEEEEEeCCCcCCCceE
Confidence 6799999999999987 999999999993 444579999885 999999999999875 45599999999999999999
Q ss_pred eEEEEecceeeccee--cceeecCCC-CCCCCCc
Q 000124 2090 KVTIQIDKVVTEGVY--SGLFNLNHD-NNKDSSS 2120 (2138)
Q Consensus 2090 ~~~~~~~~v~~~~~~--~~~~~l~~~-~~~~~~~ 2120 (2138)
+|.|.|.+|...... -.+|+|.++ ++|||++
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~ 110 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQI 110 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecChHHhccCCeE
Confidence 999999999987666 788999876 4567764
No 18
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.63 E-value=1.1e-15 Score=162.14 Aligned_cols=118 Identities=21% Similarity=0.449 Sum_probs=101.3
Q ss_pred ceEEEEEeccccc--ccc--cCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-C
Q 000124 2010 GCLTVTIKRGNNL--KQT--MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-G 2084 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~ 2084 (2138)
|+|.|+|++|.|| .+. .|..||||++.+ ++.+.+|+++++++||.|||.|+|.+.+ |.++.|.|+||+++.+ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~-~~~~~kT~~~~~t~~P~Wne~f~~~~~~-~~~~~l~i~v~d~~~~~~ 78 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV-GAQRFKTQTIPNTLNPKWNYWCEFPIFS-AQNQLLKLILWDKDRFAG 78 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE-CCEEEecceecCCcCCccCCcEEEEecC-CCCCEEEEEEEECCCCCC
Confidence 8999999999999 344 689999999999 5677789999999999999999999987 4789999999999988 5
Q ss_pred CcccceEEEEeccee---ecceecceeecCCCCCC--CCCccceEEEEEe
Q 000124 2085 KSTLGKVTIQIDKVV---TEGVYSGLFNLNHDNNK--DSSSRTLEIEIIW 2129 (2138)
Q Consensus 2085 k~~~g~~~~~~~~v~---~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~w 2129 (2138)
.+.+|++.|.|+++. ..+.....|.|.+.... ....+.+.+++.|
T Consensus 79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 688999999999998 34667889999877211 2357777799999
No 19
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.62 E-value=1.2e-15 Score=162.17 Aligned_cols=119 Identities=20% Similarity=0.380 Sum_probs=102.3
Q ss_pred EEEEEecccccccccCCCCceEEEEecC-CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Ccccc
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGN-GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KSTLG 2089 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~~~g 2089 (2138)
|.|+|++|.||....|.+||||++.+++ +.++||+|++++.||+|||+|.|.+. |.++.|.|+||+++.++ .+.||
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~--~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELS--PNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeC--CCCCEEEEEEEECCCCCCCceEE
Confidence 6899999999954778999999999953 45568999999999999999999873 46889999999999986 67999
Q ss_pred eEEEEecceeecceecceeecCCCCCC-CCCccceEEEEEecCC
Q 000124 2090 KVTIQIDKVVTEGVYSGLFNLNHDNNK-DSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2090 ~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~w~~~ 2132 (2138)
++.|.++++........+|+|.+..++ .+..+.+.++++|.+-
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999998888999999976433 3457888899999764
No 20
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.61 E-value=1.5e-15 Score=161.17 Aligned_cols=99 Identities=26% Similarity=0.413 Sum_probs=90.4
Q ss_pred EEEEEecccc---c--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC---
Q 000124 2012 LTVTIKRGNN---L--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF--- 2083 (2138)
Q Consensus 2012 l~v~v~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~--- 2083 (2138)
|.|+|++|.| | ++..|++||||++.+ .+.+.+||++++++||+|||+|.|.+.++ .+.|+|+||+++.+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~-g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKY-GPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEE-CCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 8999999999 6 566799999999999 55566799999999999999999999876 35999999999887
Q ss_pred ----CCcccceEEEEecceeecceecceeecCCC
Q 000124 2084 ----GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2084 ----~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+.||++.|+|..+..++++..+|+|.+.
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~ 112 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL 112 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC
Confidence 899999999999999999999999999977
No 21
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.61 E-value=1.3e-15 Score=156.65 Aligned_cols=99 Identities=26% Similarity=0.495 Sum_probs=89.1
Q ss_pred eEEEEEecccccc--cccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCccc
Q 000124 2011 CLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTL 2088 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~ 2088 (2138)
+|+|+|++|.||. +..|+.||||++++ +|.++||++++++.||+|||+|.|.+.+| ..+.|.|+|+++++ .+.+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~-~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~--~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTV-GKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT--GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEE-CCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC--CCcc
Confidence 4899999999993 44589999999999 56777899999999999999999999875 78899999999987 7899
Q ss_pred ceEEEEecceeecc--eecceeecCCC
Q 000124 2089 GKVTIQIDKVVTEG--VYSGLFNLNHD 2113 (2138)
Q Consensus 2089 g~~~~~~~~v~~~~--~~~~~~~l~~~ 2113 (2138)
|++.|.|+++.... .++++|+|.+.
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCC
Confidence 99999999999864 78999999876
No 22
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.60 E-value=2.1e-15 Score=160.16 Aligned_cols=115 Identities=23% Similarity=0.410 Sum_probs=95.7
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCC----CCCCeEEEEEeecCCCC-
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVP----PKGQKLHIICKSKNTFG- 2084 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~----p~~~~l~~~~~~~~~~~- 2084 (2138)
+.|+|++|.|| ++..|..||||++.+ ++.++||||+++++||+|||+|.|.+... |.++.|.++||++++||
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l-~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQL-GKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEE-CCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence 47999999999 566789999999999 56777899999999999999999998764 57889999999999997
Q ss_pred CcccceEEEEeccee--ecceecceeecCCCCCCCCC-ccceEEEE
Q 000124 2085 KSTLGKVTIQIDKVV--TEGVYSGLFNLNHDNNKDSS-SRTLEIEI 2127 (2138)
Q Consensus 2085 k~~~g~~~~~~~~v~--~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 2127 (2138)
.+.+|++.|.|.++. .++....+|+|.+..+++++ .+.+.+.+
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 578999999999998 56788899999875333332 34444544
No 23
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.60 E-value=3.4e-15 Score=157.34 Aligned_cols=117 Identities=18% Similarity=0.323 Sum_probs=101.2
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CCccc
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GKSTL 2088 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k~~~ 2088 (2138)
|+|+|++|.|| .+..|..||||++.++.....+|+++++++||.|||+|+|.+.++ .+.|.++|||++.+ +.+.+
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCCCCCCcce
Confidence 78999999999 466799999999999433555799999999999999999998764 68999999999998 56789
Q ss_pred ceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2089 GKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2089 g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
|++.|.+..+...+....+|+|.+. +++++.|.+.+.+.-+|
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~-~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 80 GSAFVDLSTLELNKPTEVKLKLEDP-NSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEEHHHcCCCCCeEEEEECCCC-CCccCceEEEEEEEECC
Confidence 9999999999999999999999988 33567777778876554
No 24
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.59 E-value=4.5e-15 Score=156.78 Aligned_cols=112 Identities=18% Similarity=0.323 Sum_probs=95.5
Q ss_pred EEEEEecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcccceE
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKV 2091 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g~~ 2091 (2138)
|.|+|++|.||... ..||||++.+ .+..+||||+++|.||+|||+|.|.+.++ ..+.|.++||++++++.+.+|++
T Consensus 2 L~V~Vi~a~~L~~~--~~Dpyv~v~l-~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~~~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN--SNDPVVEVKL-GNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDKAKDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc--cCCCEEEEEE-CCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCCCcCceeeeE
Confidence 89999999999777 8999999999 45777899999999999999999998765 78999999999999999999999
Q ss_pred EEEecceeecce-----ecceeecCCCCCCCCCccceEEEEE
Q 000124 2092 TIQIDKVVTEGV-----YSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2092 ~~~~~~v~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
.|.|+++..++. .+.+|+|.+..+ +...+.+.+.++
T Consensus 78 ~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~ 118 (121)
T cd08378 78 CFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVW 118 (121)
T ss_pred EEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEE
Confidence 999999987553 678999998832 334454445554
No 25
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.58 E-value=4.4e-15 Score=155.07 Aligned_cols=112 Identities=21% Similarity=0.342 Sum_probs=98.7
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Ccc
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KST 2087 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~~ 2087 (2138)
+++|+|++|.|| .+..|.+||||++.+ ++.++||+++++++||.|||+|.|.+.++ .++.|.|+||+++.++ .+.
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~~~~~~~ 78 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRL-GNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDTGKKDEF 78 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEE-CCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCCCCCCCe
Confidence 589999999999 444688999999999 67778899999999999999999998765 6899999999999984 689
Q ss_pred cceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2088 LGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
+|++.++|+++..++....+|.|.+. .|+++ +++.|+
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~---~G~~~---~~~~~~ 115 (116)
T cd08376 79 IGRCEIDLSALPREQTHSLELELEDG---EGSLL---LLLTLT 115 (116)
T ss_pred EEEEEEeHHHCCCCCceEEEEEccCC---CcEEE---EEEEec
Confidence 99999999999999999999999876 36654 777775
No 26
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.57 E-value=2.7e-15 Score=162.01 Aligned_cols=93 Identities=28% Similarity=0.574 Sum_probs=84.7
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GK 2085 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k 2085 (2138)
=|+|.|+|++|.|| +|.-++.||||+|++ ++.+-||+||++|+||+|||+|+|.+.|| |..|.+.|+|+|+| .-
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l-g~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL-GNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEE-CCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCCCCcc
Confidence 49999999999999 777799999999999 67777899999999999999999999999 99999999999999 88
Q ss_pred cccceEEEEecceeeccee
Q 000124 2086 STLGKVTIQIDKVVTEGVY 2104 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~~~~~ 2104 (2138)
|.||+++|.|-.++..+..
T Consensus 82 D~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred cccceeeeccHHHHHHhhh
Confidence 9999999999877664443
No 27
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.57 E-value=6.6e-15 Score=159.90 Aligned_cols=107 Identities=19% Similarity=0.357 Sum_probs=92.4
Q ss_pred CCceEEEEEeccccccc---ccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCCCCeEEEEEe-e
Q 000124 2008 LPGCLTVTIKRGNNLKQ---TMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICK-S 2079 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~-~ 2079 (2138)
-.|.|+|+|++|.||.. ..|..||||++.+..++ +|||||+++++||.|||+|.|.+. +.+..|.|+|| +
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~--l~~~~L~v~V~~d 104 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS--PTGKTLQVIVWGD 104 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc--CCCCEEEEEEEeC
Confidence 35899999999999943 44789999999995443 557999999999999999999988 68999999999 4
Q ss_pred cCCC-CCcccceEEEEecceeecceecceeecCCCCCC
Q 000124 2080 KNTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNK 2116 (2138)
Q Consensus 2080 ~~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~ 2116 (2138)
.+.| .++.||.|.|.|+++-..+....+|.|.++++-
T Consensus 105 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~ 142 (146)
T cd04028 105 YGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL 142 (146)
T ss_pred CCCCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence 6766 567899999999999888899999999998443
No 28
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.57 E-value=9.1e-15 Score=155.52 Aligned_cols=118 Identities=20% Similarity=0.366 Sum_probs=98.5
Q ss_pred eEEEEEecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCc-ccc
Q 000124 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS-TLG 2089 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~-~~g 2089 (2138)
.|.|+|++|.||..+ +..||||++.+++...+||++ ++++||.|||+|.|.+ .+|..+.++|+|++++.++|+ .+|
T Consensus 5 ~L~V~Vi~A~~L~~~-~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~-~~~~~~~l~v~v~d~~~~~~d~~iG 81 (126)
T cd08400 5 SLQLNVLEAHKLPVK-HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDD-LPPDVNSFTISLSNKAKRSKDSEIA 81 (126)
T ss_pred EEEEEEEEeeCCCCC-CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEec-CCCCcCEEEEEEEECCCCCCCCeEE
Confidence 499999999999775 899999999994333357997 5789999999999974 355667999999999999765 699
Q ss_pred eEEEEecceeecceecceeecCCCCC-CCCCccceEEEEEecC
Q 000124 2090 KVTIQIDKVVTEGVYSGLFNLNHDNN-KDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2090 ~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~w~~ 2131 (2138)
++.|+|.++...+....+|+|.+.+. +++..+.+.+.+.+..
T Consensus 82 ~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 82 EVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999999999999999998743 4555577778888764
No 29
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=8.6e-15 Score=155.60 Aligned_cols=115 Identities=23% Similarity=0.496 Sum_probs=99.7
Q ss_pred EecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCCCCC-cccceEEE
Q 000124 2016 IKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNTFGK-STLGKVTI 2093 (2138)
Q Consensus 2016 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~~~k-~~~g~~~~ 2093 (2138)
|++|.||.+..|++||||++.+ +|.+++|||++++.||+|||+|.|.+..++ .++.|+++||+++.+++ +.+|++.+
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~-~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTF-RGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEE-CCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 6788999777799999999999 777889999999999999999999998774 68999999999999876 88999999
Q ss_pred EecceeecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2094 QIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2094 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
.++++..+++...+|+|.+.+++. .-+.+.+++.+.+-
T Consensus 81 ~l~~l~~~~~~~~~~~L~~~~~~~-~~~~l~l~~~~~~~ 118 (127)
T cd08373 81 SLQDLVSEGLLEVTEPLLDSNGRP-TGATISLEVSYQPP 118 (127)
T ss_pred EhhHcccCCceEEEEeCcCCCCCc-ccEEEEEEEEEeCC
Confidence 999999999999999998873332 23566677777664
No 30
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=8.6e-15 Score=154.22 Aligned_cols=117 Identities=22% Similarity=0.315 Sum_probs=96.7
Q ss_pred ceEEEEEeccccccc--c-cCCCCceEEEEecC-CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-
Q 000124 2010 GCLTVTIKRGNNLKQ--T-MGTTNAFCRLTIGN-GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG- 2084 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~- 2084 (2138)
|.|.|+|++|.||.. . -|..||||++.++. .+.++|++++++.||.|||.|.|.+. +.++.|.++||+++.++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~--~~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN--SLTEPLNLTVYDFNDKRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC--CCCCEEEEEEEecCCCCC
Confidence 899999999999963 2 24689999999955 26678999999999999999999887 57999999999999884
Q ss_pred CcccceEEEEecceeecceecce-eecCCCCCCCCCccceEEEEEecC
Q 000124 2085 KSTLGKVTIQIDKVVTEGVYSGL-FNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2085 k~~~g~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
.+.+|++.+.+.++...+...+. +.+..+ .| ..+.+.+.++|-|
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~-~k--~~G~i~~~l~~~p 124 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLRN-GK--PVGELNYDLRFFP 124 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhcC-Cc--cceEEEEEEEeCC
Confidence 57899999999999999888754 444433 22 2466669999975
No 31
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3.9e-12 Score=147.96 Aligned_cols=364 Identities=18% Similarity=0.179 Sum_probs=271.2
Q ss_pred HHHHHHHHHHH---HhcHHHHHHHhhhcCcHHHHHHHHhc---CCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHH
Q 000124 59 ELITMRILTIA---KAKKEARLLIGSHAQAMPLFISILRS---GTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLS 132 (2138)
Q Consensus 59 e~AL~~L~~L~---~~~d~ak~lI~~~aGgVp~LV~LLks---~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~ 132 (2138)
++...+|.+++ +.+..++-.-.+ .|..+.++-++.. ++..+..+++.+|..+ ...++.+.+..+...++.
T Consensus 77 ~E~s~ll~~l~d~ck~~~A~r~la~~-~ga~~~~it~~~la~~~~~~~l~ksL~al~~l---t~~qpdl~da~g~~vvv~ 152 (461)
T KOG4199|consen 77 EETTELLEQLADECKKSLAHRVLAGK-NGAHDALITLLELAESPNESVLKKSLEAINSL---THKQPDLFDAEAMAVVLK 152 (461)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcc-CCCcchhhhHHHHhhCCchhHHHHHHHHHHHh---hcCCcchhccccHHHHHH
Confidence 34444555554 333345555555 7888888877754 3445555566665554 455667788899999999
Q ss_pred hhcc--CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhH
Q 000124 133 LLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210 (2138)
Q Consensus 133 LL~s--ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~ 210 (2138)
+|.. ++.++.....+.+..-|. ..+.+|+.|++.++.+.+.+.|...++. .+...+.++++-|...++-|..
T Consensus 153 lL~~~~~~~dlt~~~~~~v~~Ac~----~hE~nrQ~~m~~~il~Li~~~l~~~gk~--~~VRel~~a~r~l~~dDDiRV~ 226 (461)
T KOG4199|consen 153 LLALKVESEEVTLLTLQWLQKACI----MHEVNRQLFMELKILELILQVLNREGKT--RTVRELYDAIRALLTDDDIRVV 226 (461)
T ss_pred HHhcccchHHHHHHHHHHHHHHHH----HhHHHHHHHHHhhHHHHHHHHHcccCcc--HHHHHHHHHHHHhcCCCceeee
Confidence 9987 578888888888888886 3678899999999999999999877654 3566788899988887765411
Q ss_pred HHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcC
Q 000124 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKS 290 (2138)
Q Consensus 211 aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s 290 (2138)
+ ...-.+| +.+...|.+..|+..++.+-++........+|..++.+
T Consensus 227 f------------------g~ah~hA---------------r~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr- 272 (461)
T KOG4199|consen 227 F------------------GQAHGHA---------------RTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR- 272 (461)
T ss_pred c------------------chhhHHH---------------HHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-
Confidence 0 0111111 33444556777777776565667777888999999995
Q ss_pred HHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHH
Q 000124 291 IKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAY 370 (2138)
Q Consensus 291 ~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~ 370 (2138)
++.++.+.+.||++.|+.++.+....- .++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~--------~r~------------------------------------------ 302 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQG--------NRT------------------------------------------ 302 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhh--------HHH------------------------------------------
Confidence 899999999999999999876633110 000
Q ss_pred HHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHc--cCCHHH
Q 000124 371 ALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT--MATADV 448 (2138)
Q Consensus 371 ~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~--sss~ev 448 (2138)
.-..++..|..++++++++..+.+.+|.+.++.++. ++++.+
T Consensus 303 ------------------------------------l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~V 346 (461)
T KOG4199|consen 303 ------------------------------------LAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLV 346 (461)
T ss_pred ------------------------------------HHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHH
Confidence 113344456677888889999999999999988764 467888
Q ss_pred HHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCc--hhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh
Q 000124 449 REYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSS--EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE 526 (2138)
Q Consensus 449 q~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d--~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk 526 (2138)
...++.++..+|...++....+++.|+-...++.++... ..+|++|++.++|+..++.+++..+... +++.|+..-+
T Consensus 347 i~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~ 425 (461)
T KOG4199|consen 347 IQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAK 425 (461)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHH
Confidence 889999999999998999999999999999999987654 4589999999999999888887777665 6888998888
Q ss_pred hCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 527 AGSQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 527 s~d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
..++..+..+..+|+.|+++.......
T Consensus 426 ~~h~tce~~akaALRDLGc~v~lre~w 452 (461)
T KOG4199|consen 426 ANHETCEAAAKAALRDLGCDVYLREEW 452 (461)
T ss_pred hcCccHHHHHHHHHHhcCcchhhHHHh
Confidence 889999999999999999965544433
No 32
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.55 E-value=4.6e-15 Score=156.33 Aligned_cols=101 Identities=20% Similarity=0.355 Sum_probs=88.2
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~ 2082 (2138)
-|.|+|+|++|.|| .+ .|..||||++.+..++ ++||||+++++||.|||+|.|.+...-.+++|+|+||+++.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 47799999999999 55 4889999999996543 33699999999999999999988665567899999999988
Q ss_pred CC--CcccceEEEEecceeecceecceeec
Q 000124 2083 FG--KSTLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2083 ~~--k~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
++ ++.||++.|.|.+++..+.++++|+|
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 74 57899999999999988889999987
No 33
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.55 E-value=8.3e-15 Score=155.00 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=87.7
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecC----CCCccccccccCCCCCccccceeee--cCCCCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAF--DVPPKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~--~~~p~~~~l~~~~~~~ 2080 (2138)
.|.|+|+|++|.|| .+ .|..||||++.+.. ..++||||+++++||.|||+|.|.+ .+-+....|+++||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 78999999999999 55 58999999999953 3455799999999999999999976 2223678999999999
Q ss_pred CCCC-CcccceEEEEecceeecceecceeec
Q 000124 2081 NTFG-KSTLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2081 ~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
+.|+ .+.+|.|.|.|.++...+....+|+|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9996 57799999999999988888999987
No 34
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.54 E-value=1.5e-14 Score=155.91 Aligned_cols=108 Identities=21% Similarity=0.445 Sum_probs=90.7
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Cc
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KS 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~ 2086 (2138)
|.|.|+|++|.|| .+..|..||||++.+ .+...+|+|+++|.||.|||+|.|.+.++ ..+.|.|+||+++.|+ .+
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~-~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSM-GSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDFFSPDD 92 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEE-CCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCCCCCCC
Confidence 8899999999999 456799999999999 55667899999999999999999999765 6799999999999987 57
Q ss_pred ccceEEEEecceee-----cceecceeecCCCCCCCCCcc
Q 000124 2087 TLGKVTIQIDKVVT-----EGVYSGLFNLNHDNNKDSSSR 2121 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~-----~~~~~~~~~l~~~~~~~~~~~ 2121 (2138)
.+|++.|+|.+++. .+.+..+.+|.+- ..|.++
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~--~~g~i~ 130 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHEV--PTGEVV 130 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEeccccc--cceeEE
Confidence 99999999999997 5555555565322 336554
No 35
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.54 E-value=1.8e-14 Score=152.15 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=96.8
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-ccc
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-STL 2088 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~~~ 2088 (2138)
|+|+|++|.|| .+..|..||||++.+ +|..++|+++++++||+|||+|+|.+.++ ..+.|.|+||+++.+|+ +.+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFY-NGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEE-CCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCCCCCCcEe
Confidence 79999999999 445578899999999 56677899999999999999999999876 47899999999999976 779
Q ss_pred ceEEEEecceeecceecceeecCCCCCC----CCCccceEEEE
Q 000124 2089 GKVTIQIDKVVTEGVYSGLFNLNHDNNK----DSSSRTLEIEI 2127 (2138)
Q Consensus 2089 g~~~~~~~~v~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~ 2127 (2138)
|+|.+.|.++...+....+|.|.+..++ ++..|.|.+.+
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999999988889999999986433 33445555544
No 36
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.53 E-value=2.8e-14 Score=151.14 Aligned_cols=113 Identities=19% Similarity=0.342 Sum_probs=93.1
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC---c
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK---S 2086 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k---~ 2086 (2138)
|.|+|++|+|| .+..|..||||++.++....+||+|+++++||+|||+|+|.+.. ++.|.|+||++++||+ +
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCCCCCCCCc
Confidence 78999999999 46678999999999954556679999999999999999999953 8999999999999975 6
Q ss_pred ccceEEEEecceeeccee-cceeecCCCCC-CCCC-ccceEEEE
Q 000124 2087 TLGKVTIQIDKVVTEGVY-SGLFNLNHDNN-KDSS-SRTLEIEI 2127 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~-~~~~~l~~~~~-~~~~-~~~~~~~~ 2127 (2138)
.+|++.|++++++..+.. ..+|.|.+... .+|. +|.+.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 899999999999876655 77899966621 1333 56666655
No 37
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.53 E-value=3.1e-14 Score=151.45 Aligned_cols=97 Identities=23% Similarity=0.375 Sum_probs=84.6
Q ss_pred ceEEEEEeccccc-ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CCcc
Q 000124 2010 GCLTVTIKRGNNL-KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GKST 2087 (2138)
Q Consensus 2010 g~l~v~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k~~ 2087 (2138)
|.|.|+|++|.|| .+..|..||||++.+ .|..+||||++++.||+|||+|.|....++.+++|.|+||+++++ ..+.
T Consensus 28 ~~L~V~V~~A~~L~~d~~g~~DPYVkV~~-~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~ 106 (127)
T cd04032 28 ATLTVTVLRATGLWGDYFTSTDGYVKVFF-GGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDL 106 (127)
T ss_pred EEEEEEEEECCCCCcCcCCCCCeEEEEEE-CCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCe
Confidence 8999999999999 456689999999999 577888999999999999999999866666899999999999999 5667
Q ss_pred cceEEEEecceeecceecceeecC
Q 000124 2088 LGKVTIQIDKVVTEGVYSGLFNLN 2111 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~~~~~~~~l~ 2111 (2138)
+|++.+.|...+.| ..|++.
T Consensus 107 IG~~~i~l~~~~~~----~~~~~~ 126 (127)
T cd04032 107 LGTCSVVPEAGVHE----DSCQLN 126 (127)
T ss_pred eEEEEEEecCCcee----eeeecC
Confidence 99999999977765 445543
No 38
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.52 E-value=9.9e-13 Score=171.27 Aligned_cols=372 Identities=16% Similarity=0.167 Sum_probs=279.1
Q ss_pred HHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCC---HHHHHHHHHHHHHHHhhcCCCc
Q 000124 175 TLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN---AAAQSNAASLLARLMLAFGDSI 251 (2138)
Q Consensus 175 ~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s---~evq~~A~~aL~nLs~~~~e~r 251 (2138)
.|+.++.... .+...+.+..+++..+. +..++..|+++.|+++|..++ .+.+..+-.+|+||....++..
T Consensus 201 sllsml~t~D------~ee~ar~fLemSss~es-CaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k 273 (2195)
T KOG2122|consen 201 SLLSMLGTDD------EEEMARTFLEMSSSPES-CAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK 273 (2195)
T ss_pred HHhhhcccCC------HHHHHHHHHHhccCchh-hHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh
Confidence 4555554433 33456778888776654 488999999999999998754 5688899999999998777766
Q ss_pred chhhccchHHHHHHHh----------cc------CCCHhHHH-HHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCc
Q 000124 252 PTVIDSGAVKALVQLV----------GQ------NNDISVRA-SAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPS 314 (2138)
Q Consensus 252 ~~l~~~GaL~~LL~LL----------~s------~sd~~vr~-~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s 314 (2138)
....+..++..|=++. +. +....-+. .|..+|..++++ .+.|+.|.+-||++.|-+++.-..
T Consensus 274 r~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh 352 (2195)
T KOG2122|consen 274 RGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDH 352 (2195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6555555554443322 21 11113344 567777888885 999999999999888888553211
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHH
Q 000124 315 KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI 394 (2138)
Q Consensus 315 ~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~ 394 (2138)
+ .+| +... .
T Consensus 353 -~--------------------mhg---------------------------------------p~tn-d---------- 361 (2195)
T KOG2122|consen 353 -E--------------------MHG---------------------------------------PETN-D---------- 361 (2195)
T ss_pred -H--------------------hcC---------------------------------------CCCC-c----------
Confidence 0 000 0000 0
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHh-hcCchhHHHHhh-hchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchh-hHHhh
Q 000124 395 LVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSH-AEAKKVLIGLITMATADVREYLILSLTKLCRREVGI-WEAIG 471 (2138)
Q Consensus 395 LV~LL~s~~~e~vr~~Aa~AL~~L-~~n~~~~~~L~e-~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~-~~~I~ 471 (2138)
...-.+|.++..+|.|| +++..++..+.. .++++.+|..+.+..+++++..+..|+||++.-+.+ +..+.
T Consensus 362 -------~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLr 434 (2195)
T KOG2122|consen 362 -------GECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLR 434 (2195)
T ss_pred -------HHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHH
Confidence 00012788889999999 666666666654 477999999999999999999999999999976555 45566
Q ss_pred hchhHHHHHHH-hcCCchhhHHHHHHHHHHHhhcCchhHHHHHh-cCCchHHHHHhhhC----CHHHHHHHHHHHHHHhc
Q 000124 472 KREGIQLLISL-LGLSSEQHQEYAVQLIAILTEQVDDSKWAITA-AGGIPPLVQLLEAG----SQKAREVAAHVLWILCC 545 (2138)
Q Consensus 472 e~ggIp~LV~L-L~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~-aGaIp~LV~LLks~----d~~vre~Aa~aL~nLs~ 545 (2138)
+.|-+..|..+ +....+...+..+.+||||+.|+.+|+..|.+ .|++..||.+|... .-.+-+.+-++|.|.+.
T Consensus 435 E~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS 514 (2195)
T KOG2122|consen 435 ETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS 514 (2195)
T ss_pred hhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHh
Confidence 67778777764 45667778889999999999999999999986 58899999999643 56778889999999865
Q ss_pred ---CChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000124 546 ---HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2138)
Q Consensus 546 ---~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~ 622 (2138)
..+.+|.++.+.+++..|++.|++++-.+..++|.+||||+.. +++
T Consensus 515 ~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR----------------~p~--------------- 563 (2195)
T KOG2122|consen 515 LIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR----------------SPE--------------- 563 (2195)
T ss_pred HhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC----------------CHH---------------
Confidence 3677899999999999999999999999999999999999743 111
Q ss_pred hcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcCh
Q 000124 623 ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ 669 (2138)
Q Consensus 623 ~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~ 669 (2138)
-++.+.+.|++..|-.++++.+..+-+.++.+|.||..+.+
T Consensus 564 ------DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 564 ------DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred ------HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 13346778899999999999999999999999999988654
No 39
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.52 E-value=2.3e-14 Score=152.43 Aligned_cols=115 Identities=18% Similarity=0.366 Sum_probs=92.9
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCC--CCeEEEEEeecCCC--CC
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPK--GQKLHIICKSKNTF--GK 2085 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~--~~~l~~~~~~~~~~--~k 2085 (2138)
|+|+|++|.|| .+..|..||||++.+ .+.++||+|+++++||.|||.|.|.+.+|+. ...|.|+||+++++ +.
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~-~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDF-DGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEE-CCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 79999999999 455588999999999 5667789999999999999999999987653 47899999999988 58
Q ss_pred cccceEEEEecceee-cceecceeecCCCCCCCCCccceEEEE
Q 000124 2086 STLGKVTIQIDKVVT-EGVYSGLFNLNHDNNKDSSSRTLEIEI 2127 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~ 2127 (2138)
+.||+|.|.+.++.. +..-..+|+|...+.++...+.+.+.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 123 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKV 123 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEE
Confidence 899999999999985 445577899986532333344333433
No 40
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.52 E-value=3.2e-14 Score=157.10 Aligned_cols=120 Identities=19% Similarity=0.386 Sum_probs=97.1
Q ss_pred CCceEEEEEeccccccc--------------------------------ccCCCCceEEEEecCCCCccccccccCCCCC
Q 000124 2008 LPGCLTVTIKRGNNLKQ--------------------------------TMGTTNAFCRLTIGNGPPRQTKVVSHSISPE 2055 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~ 2055 (2138)
|=|.|-|+|.+|+||.+ ..|..||||++.+++....+|||++++.||+
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 44999999999999932 3366899999999433334799999999999
Q ss_pred ccccceeeecCCCCCCeEEEEEeecCCCCCcccceEEEEecceeecceecceeecCCCCCCCCC-ccceEEEEEe
Q 000124 2056 WKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSS-SRTLEIEIIW 2129 (2138)
Q Consensus 2056 w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~w 2129 (2138)
|||+|.|.+.++ .+.|.+.|||++.+|.+.+|++.|.++++...+.+..+|+|.+.+.|.-+ ...|.+.++.
T Consensus 85 WnE~F~~~~~~~--~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 85 WNESFHIYCAHY--ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred cceEEEEEccCC--CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999988643 68999999999999999999999999999999999999999887344212 1234455543
No 41
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.52 E-value=3.7e-14 Score=154.79 Aligned_cols=106 Identities=21% Similarity=0.339 Sum_probs=90.3
Q ss_pred EEEEEecccccccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCC----------C----CCCeE
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVP----------P----KGQKL 2073 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~----------p----~~~~l 2073 (2138)
|+|+|++|.||....|..||||++++..+ .+++|+|+++++||+|||+|.|.+..+ | ....|
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L 81 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLEL 81 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEE
Confidence 79999999999777799999999999543 455799999999999999999999522 2 23579
Q ss_pred EEEEeecCCC-CCcccceEEEEecceeec-ceecceeecCCCCCCC
Q 000124 2074 HIICKSKNTF-GKSTLGKVTIQIDKVVTE-GVYSGLFNLNHDNNKD 2117 (2138)
Q Consensus 2074 ~~~~~~~~~~-~k~~~g~~~~~~~~v~~~-~~~~~~~~l~~~~~~~ 2117 (2138)
.|+||+++.+ ..+.||++.|.|..+-.. +....+|.|.+..+++
T Consensus 82 ~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~ 127 (148)
T cd04010 82 RVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKS 127 (148)
T ss_pred EEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccccc
Confidence 9999999988 455799999999998887 7889999998876666
No 42
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.51 E-value=1.7e-14 Score=150.01 Aligned_cols=103 Identities=16% Similarity=0.369 Sum_probs=89.0
Q ss_pred ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcccceEEEEecceeec-
Q 000124 2023 KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTE- 2101 (2138)
Q Consensus 2023 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~~- 2101 (2138)
+.++|..||||++.+++...++|++++++.||+|||.|+|.+.++ ..+.|+|+|+++++++++.+|+|.++|.+++..
T Consensus 7 ~~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 7 ESKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhh
Confidence 456799999999999544566899999999999999999999876 689999999999999999999999999999874
Q ss_pred ceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2102 GVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2102 ~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
+...++|+|.+. +.|+ +.++++|.|
T Consensus 86 ~~~~~w~~L~~~--~~G~---i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSGN--GQGR---IRISALWKP 110 (111)
T ss_pred hccceeEECCCC--CCCE---EEEEEEEec
Confidence 566899999874 4454 459999987
No 43
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.51 E-value=6.8e-13 Score=172.74 Aligned_cols=364 Identities=17% Similarity=0.163 Sum_probs=283.2
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccC---CHHHHHHHHHHHHHhhhccchhhHHh
Q 000124 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA---TADVREYLILSLTKLCRREVGIWEAI 470 (2138)
Q Consensus 394 ~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~ss---s~evq~~Aa~aL~~Ls~~s~~~~~~I 470 (2138)
.|..++...+. +.-.+.+..+..+++-+..+...+++++|+.++.-. +.+.+++|-.+|.++....++.+..-
T Consensus 201 sllsml~t~D~----ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~R 276 (2195)
T KOG2122|consen 201 SLLSMLGTDDE----EEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGR 276 (2195)
T ss_pred HHhhhcccCCH----HHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhH
Confidence 44445554443 445566777788888888899999999999998653 46788899999999988767665443
Q ss_pred hhchhHHHHHH----------HhcCC-------chhhHH-HHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC----
Q 000124 471 GKREGIQLLIS----------LLGLS-------SEQHQE-YAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG---- 528 (2138)
Q Consensus 471 ~e~ggIp~LV~----------LL~s~-------d~~Vr~-~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~---- 528 (2138)
.+...+..|-+ ++... ...-+. .|+..|.++++ ++++|..+.+.|++..+.+|+.-.
T Consensus 277 RE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mh 355 (2195)
T KOG2122|consen 277 REKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMH 355 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 44444444332 22211 112333 67888888888 799999999999999999987421
Q ss_pred --------CHHHHHHHHHHHHHHhcCChhHHHHHH-HcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHH
Q 000124 529 --------SQKAREVAAHVLWILCCHSEDIRACVE-SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLA 599 (2138)
Q Consensus 529 --------d~~vre~Aa~aL~nLs~~sd~~r~~I~-e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~ 599 (2138)
.-.+|+.+..+|.||+..+..++..+. ..|.++.+|..|.+...++..-.+.+|.||+-..+.+
T Consensus 356 gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~n------- 428 (2195)
T KOG2122|consen 356 GPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSN------- 428 (2195)
T ss_pred CCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcccccccc-------
Confidence 346799999999999997666665554 4789999999999988899999999999998654311
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH-hhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000124 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ-VLNSSNEENQEYAASVLADLFSMRQDICGSLATD 678 (2138)
Q Consensus 600 LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~-LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~ 678 (2138)
.++.+.+.|-+..|+. .++..++.+......|||||+.+..++...+...
T Consensus 429 -----------------------------mKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaV 479 (2195)
T KOG2122|consen 429 -----------------------------MKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAV 479 (2195)
T ss_pred -----------------------------HHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcc
Confidence 1222344556666666 3455677778889999999999889999888876
Q ss_pred -CCHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 679 -EIVNPCMRLLTSN----TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 679 -GaV~~Lv~LL~dg----s~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
|++..|+.+|... +-.+.+.|-..|.|++..+-..+..|+.+.+...+..|+..|++.+-.+..++|.+|+||+.
T Consensus 480 DGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA 559 (2195)
T KOG2122|consen 480 DGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 559 (2195)
T ss_pred cchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhc
Confidence 8899999999764 34578888899999887333334788889999999999999999999999999999999976
Q ss_pred -CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCC
Q 000124 754 -DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV 798 (2138)
Q Consensus 754 -~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~ 798 (2138)
+++.++.+.+.|+++.|-.++++.|.++-+-++.+|.||....|.
T Consensus 560 R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 560 RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 888999999999999999999999999999999999999987654
No 44
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.50 E-value=2.3e-14 Score=152.01 Aligned_cols=107 Identities=21% Similarity=0.391 Sum_probs=91.4
Q ss_pred hhhcCC--ceEEEEEeccccc--ccccCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCC-CCCeEE
Q 000124 2004 LLHCLP--GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLH 2074 (2138)
Q Consensus 2004 ~~~~~~--g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~ 2074 (2138)
-|++-| |.|+|+|++|.|| .+..|..||||++.+.. ..++||+|+++++||+|||+|.|.+.... ....|+
T Consensus 8 ~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~ 87 (127)
T cd04030 8 TIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLD 87 (127)
T ss_pred EEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEE
Confidence 355666 8999999999999 45568999999999954 34457999999999999999999986443 357999
Q ss_pred EEEeecCCC---CCcccceEEEEecceeecceecceeec
Q 000124 2075 IICKSKNTF---GKSTLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2075 ~~~~~~~~~---~k~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
|.||+++.| .++.+|++.|.|+++...+..+.+|.|
T Consensus 88 i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 88 VAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999999986 568899999999999998999999987
No 45
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.50 E-value=3.6e-14 Score=149.75 Aligned_cols=105 Identities=23% Similarity=0.464 Sum_probs=91.3
Q ss_pred ceEEEEEeccccccc--ccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCc-
Q 000124 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS- 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~- 2086 (2138)
|.|.|+|++|.||.. ..|..||||++.+++.+..+|++++++.||+|||+|.|.+..+ .+.|.|+||+++.++++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 899999999999943 5689999999999433556799999999999999999987654 68999999999999765
Q ss_pred ccceEEEEecceeecceecceeecCCCCCCCCC
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSS 2119 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 2119 (2138)
.+|++.+.|.+++.. ...++|.|.++ ++++
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~--~~~~ 108 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDD--EEER 108 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCC--Ccce
Confidence 899999999999876 88999999999 4444
No 46
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.50 E-value=3.4e-14 Score=151.04 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=87.9
Q ss_pred CceEEEEEeccccccc--c-cCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNLKQ--T-MGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~--~-~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
-|.|+|+|++|.||.. . .|..||||++.+.. ..+|||||+++++||+|||+|.|.+..+.+ +..|.++||++
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 4789999999999943 2 37899999999943 345679999999999999999999866544 45899999999
Q ss_pred CCCCCc-ccceEEEEecceeecceecceeec
Q 000124 2081 NTFGKS-TLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2081 ~~~~k~-~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
+.+||+ .+|.|.|.|+++-..+.+.++|+|
T Consensus 94 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 94 DRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred CCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 999775 799999999999999999999987
No 47
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.50 E-value=3.1e-14 Score=147.77 Aligned_cols=101 Identities=26% Similarity=0.459 Sum_probs=88.6
Q ss_pred EEEEEecccccc--cc-cCCCCceEEEEecCCCCccccccccCCCCCc-cccceeeecCCCC-CCeEEEEEeecCCCCC-
Q 000124 2012 LTVTIKRGNNLK--QT-MGTTNAFCRLTIGNGPPRQTKVVSHSISPEW-KEGFTWAFDVPPK-GQKLHIICKSKNTFGK- 2085 (2138)
Q Consensus 2012 l~v~v~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w-~~~f~~~~~~~p~-~~~l~~~~~~~~~~~k- 2085 (2138)
|.|+|++|.||. ++ -|..||||++.++ +.++||+|+++++||+| ||+|+|.+..+.. .+.|.|+||+++.+|+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~-~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG-STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC-CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence 689999999993 32 4778999999995 46778999999999999 9999999977654 5799999999999987
Q ss_pred cccceEEEEecceee---cceecceeecCCC
Q 000124 2086 STLGKVTIQIDKVVT---EGVYSGLFNLNHD 2113 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~---~~~~~~~~~l~~~ 2113 (2138)
+.+|++.+.+..++. +++++++|+|.++
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~~ 110 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIYDT 110 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEcccC
Confidence 579999999999999 5689999999874
No 48
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.49 E-value=8.1e-14 Score=152.61 Aligned_cols=118 Identities=16% Similarity=0.290 Sum_probs=95.0
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCCcccccccc-CCCCCccccceeeecCCCCCCeEEEEEeecCCC-CCc
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSH-SISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GKS 2086 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k~ 2086 (2138)
.|.|+|++|+|| .+..|++||||++.+ .+...|||++++ ++||+|||+|+|.+.+| ..+.|.|+|++++.+ +.+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l-~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~~~~dd 78 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQL-GNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVGPNKDE 78 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEE-CCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecCCCCCC
Confidence 389999999999 677799999999999 456667999977 69999999999999775 678999999999886 678
Q ss_pred ccceEEEEecceeec----ceecceeecCCCCC-----CCCCc-cceEEEEEec
Q 000124 2087 TLGKVTIQIDKVVTE----GVYSGLFNLNHDNN-----KDSSS-RTLEIEIIWS 2130 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~----~~~~~~~~l~~~~~-----~~~~~-~~~~~~~~w~ 2130 (2138)
.||+|.|.|.++..+ .....+|.|.+.+. |+.+. +.+.+.+.-.
T Consensus 79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 899999999998643 34789999998742 22222 4455665544
No 49
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.49 E-value=1.4e-13 Score=146.51 Aligned_cols=114 Identities=15% Similarity=0.252 Sum_probs=93.9
Q ss_pred ceEEEEEecccccc--cccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcc
Q 000124 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKST 2087 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~ 2087 (2138)
++|.|+|++|+||. +..|..||||++.+ .|.+.+|+|+++++||+|||.|.|.+.++ +..|.|+||+++.++.+.
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~~~d~~ 79 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKC-EGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNLLCDEF 79 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEE-CCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCCCCCCc
Confidence 57999999999994 45689999999999 56777899999999999999999988754 789999999999999999
Q ss_pred cceEEEEecceeecceecceeecCCCC--CCCCCccceEEEEE
Q 000124 2088 LGKVTIQIDKVVTEGVYSGLFNLNHDN--NKDSSSRTLEIEII 2128 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~ 2128 (2138)
+|++.+.+... .+....+|+|.... .++...|.+.|++.
T Consensus 80 lG~~~~~l~~~--~~~~~~~~~l~~~~~~~~~~~~G~i~~~~~ 120 (126)
T cd04046 80 LGQATLSADPN--DSQTLRTLPLRKRGRDAAGEVPGTISVKVT 120 (126)
T ss_pred eEEEEEecccC--CCcCceEEEcccCCCCCCCCCCCEEEEEEE
Confidence 99999999864 45666889995321 23445565556654
No 50
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.48 E-value=5.1e-14 Score=150.28 Aligned_cols=103 Identities=19% Similarity=0.305 Sum_probs=85.4
Q ss_pred CceEEEEEeccccc--cccc-CCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTM-GTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~-~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
.|.|+|+|++|.|| .+.. |+.||||++.+..+. +|||||+++++||+|||+|.|.+...-+ +..|++.||++
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 37899999999999 3333 889999999995443 5579999999999999999998754333 45999999999
Q ss_pred CCC-CCcccceEEEEecceee-cc--eecceeecC
Q 000124 2081 NTF-GKSTLGKVTIQIDKVVT-EG--VYSGLFNLN 2111 (2138)
Q Consensus 2081 ~~~-~k~~~g~~~~~~~~v~~-~~--~~~~~~~l~ 2111 (2138)
+.| +.+.||.|.|.|.++-. ++ +...+|+|+
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 988 55799999999999944 33 788888874
No 51
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.48 E-value=1.1e-13 Score=146.31 Aligned_cols=113 Identities=19% Similarity=0.304 Sum_probs=92.0
Q ss_pred EEEEEecccccccc---cCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-cc
Q 000124 2012 LTVTIKRGNNLKQT---MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-ST 2087 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~~ 2087 (2138)
|.|+|.+|.||..+ .|..||||++.+++...+||||++|++||.|||+|+|.+.+. ...|++.||+++.|++ +.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCCCCCCce
Confidence 78999999999543 367899999999544456899999999999999999998643 5799999999999855 77
Q ss_pred cceEEEEecceeecceecceeecCCCCCCCCCccceEEE
Q 000124 2088 LGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIE 2126 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 2126 (2138)
+|+|.|.|.++-..+....+|+|.+..+..+..+.+.+.
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~ 118 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLE 118 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEE
Confidence 999999999999999999999999863333333433343
No 52
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.48 E-value=6.9e-14 Score=148.60 Aligned_cols=103 Identities=15% Similarity=0.264 Sum_probs=87.1
Q ss_pred CceEEEEEeccccc--cccc-CCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCCC-CeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTM-GTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~-~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~~~~~~ 2080 (2138)
.|-|.|+|++|.|| .+.. |+.||||++.+..+. ++||||+++++||+|||+|.|.+....+. ..|.++||++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 36799999999999 5544 789999999995433 45799999999999999999988654344 5899999999
Q ss_pred CCCCC-cccceEEEEecceeecceecceeecC
Q 000124 2081 NTFGK-STLGKVTIQIDKVVTEGVYSGLFNLN 2111 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~ 2111 (2138)
+.+++ +.||.+.|.|.++-..+....+|.|.
T Consensus 94 ~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 94 DSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99976 58999999999998888888888873
No 53
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.48 E-value=7.7e-14 Score=151.82 Aligned_cols=109 Identities=24% Similarity=0.445 Sum_probs=91.3
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-c
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-S 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~ 2086 (2138)
|+|.|+|++|.|| .+. +..||||++.+ .+.++||+|+++|.||+|||+|.|.+.+| .+.+.++||++++|++ +
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~-g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL-GNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEE-CCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 8999999999999 566 88999999999 56777899999999999999999999877 8899999999999975 7
Q ss_pred ccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
.||++.+.+.+++...+. +++.+. ++|. + |. +|-|-
T Consensus 78 ~iG~a~i~l~~l~~~~~~---~~~~~~--~~~~-~---~~-~~~~~ 113 (145)
T cd04038 78 SMGEAEIDLEPLVEAAKL---DHLRDT--PGGT-Q---IK-KVLPS 113 (145)
T ss_pred EEEEEEEEHHHhhhhhhh---hccccC--CCCE-E---EE-EEecC
Confidence 899999999999876555 345554 4444 2 33 67654
No 54
>PRK09687 putative lyase; Provisional
Probab=99.47 E-value=1.2e-12 Score=157.21 Aligned_cols=251 Identities=14% Similarity=0.126 Sum_probs=206.1
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
-++.|..+|.+.+..+|..++.+|..+.. ...++.+..++++.++.+|..++++|+.|......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 46789999999999999999999998874 24677888889999999999999999999752211
Q ss_pred HHcCCcchhhhc-cccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000124 555 ESAGAVPAFLWL-LKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2138)
Q Consensus 555 ~e~GaI~aLv~L-LkS~~~evq~~Aa~AL~nLs~~~---e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~ 630 (2138)
...+++.|..+ +++.++.++..++.+|+++.... ....+..+...+.+++..|+..+..+|+.+
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------- 155 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----------- 155 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-----------
Confidence 12356667766 67889999999999999996432 234577788888999999999999998754
Q ss_pred hhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 000124 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 631 ~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~ 710 (2138)
....+++.|+.++++.++.+|..|+.+|.++...+ ..+++.|+.+|.+.++.+|..|+++|+++..
T Consensus 156 ---~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-- 221 (280)
T PRK09687 156 ---NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-- 221 (280)
T ss_pred ---CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC--
Confidence 22346999999999999999999999999984322 3567889999999999999999999999753
Q ss_pred CcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHh-CCCHHHHHHHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA-EGTSEGKKNASRAL 789 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~-~~~~~Vr~~Aa~AL 789 (2138)
+ .++++|++.|.+++ ++..++.+|+++. .+.++|.|.+++. +.++.++.+|.++|
T Consensus 222 ~------------~av~~Li~~L~~~~--~~~~a~~ALg~ig----------~~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 222 K------------RVLSVLIKELKKGT--VGDLIIEAAGELG----------DKTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred h------------hHHHHHHHHHcCCc--hHHHHHHHHHhcC----------CHhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 2 38999999999876 6778999999776 3468999999996 77999999999998
Q ss_pred HH
Q 000124 790 HQ 791 (2138)
Q Consensus 790 ~n 791 (2138)
..
T Consensus 278 ~~ 279 (280)
T PRK09687 278 KR 279 (280)
T ss_pred hc
Confidence 54
No 55
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.47 E-value=1.7e-13 Score=143.54 Aligned_cols=114 Identities=22% Similarity=0.400 Sum_probs=92.3
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Cc
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KS 2086 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~ 2086 (2138)
|.|.|+|++|.|| .+..|+.||||++.+ ++...+|++++++.||.|||+|.|.+.+ .++.++++||+++.++ .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~-~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~~~~~~ 77 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLEL-VNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDKDKKPE 77 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEE-CCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCCCCCCc
Confidence 8899999999999 455688999999999 5666789999999999999999999865 4799999999999875 56
Q ss_pred ccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEE
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
.+|++.++++++.. | ...+|+|.+...+.-..+.+.++++
T Consensus 78 ~iG~~~~~l~~~~~-~-~~~~~~l~~~~~~~~~~G~i~l~~~ 117 (119)
T cd08377 78 FLGKVAIPLLSIKN-G-ERKWYALKDKKLRTRAKGSILLEMD 117 (119)
T ss_pred eeeEEEEEHHHCCC-C-CceEEECcccCCCCceeeEEEEEEE
Confidence 79999999999753 3 3579999876322223455556654
No 56
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.46 E-value=1.1e-13 Score=143.50 Aligned_cols=90 Identities=14% Similarity=0.254 Sum_probs=77.7
Q ss_pred ceEEEEEeccccccc--cc----CCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC
Q 000124 2010 GCLTVTIKRGNNLKQ--TM----GTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~ 2083 (2138)
|+|.|+|++|.||.. .+ ++.||||++.+ ++...||+|++++.||+|||+|.|.+..+..+..|.++||+++.+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~-~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF-GRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE-CCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 899999999999943 22 34799999999 455667999999999999999999987766677999999999998
Q ss_pred CC-cccceEEEEecceee
Q 000124 2084 GK-STLGKVTIQIDKVVT 2100 (2138)
Q Consensus 2084 ~k-~~~g~~~~~~~~v~~ 2100 (2138)
|+ +.+|++.|.|.++..
T Consensus 80 ~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 80 SFNDYVATGSLSVQELLN 97 (108)
T ss_pred CCCcceEEEEEEHHHHHh
Confidence 55 779999999998765
No 57
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.46 E-value=1.9e-13 Score=146.45 Aligned_cols=114 Identities=18% Similarity=0.360 Sum_probs=95.4
Q ss_pred CCceEEEEEecccccc--cc----------cCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEE
Q 000124 2008 LPGCLTVTIKRGNNLK--QT----------MGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHI 2075 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~ 2075 (2138)
..|.|.|+|++|.||. +. .|..||||++.+++...++|++.+++.||+|||+|+|.+. -+..|+|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~---~~~~l~~ 78 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH---NGRNLEL 78 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC---CCCEEEE
Confidence 4799999999999994 32 2578999999995333357999999999999999999985 3589999
Q ss_pred EEeecCCCCC-cccceEEEEecceee--cceecceeecCCCCCCCCCccceEEEEEecC
Q 000124 2076 ICKSKNTFGK-STLGKVTIQIDKVVT--EGVYSGLFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2076 ~~~~~~~~~k-~~~g~~~~~~~~v~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
+|++++.+++ +.+|++.|.|+++.. .+....+|+|.+. | .+.+++.|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~----G---~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEPQ----G---KLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccCC----c---EEEEEEEEec
Confidence 9999988864 799999999999998 5778999999754 4 5558889864
No 58
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.46 E-value=1.1e-13 Score=143.88 Aligned_cols=93 Identities=24% Similarity=0.526 Sum_probs=78.7
Q ss_pred ceEEEEEeccccc--cccc-CCCCceEEEEecC-C-CCccccccccCCCCCccccceeeecCCC---CCCeEEEEEeecC
Q 000124 2010 GCLTVTIKRGNNL--KQTM-GTTNAFCRLTIGN-G-PPRQTKVVSHSISPEWKEGFTWAFDVPP---KGQKLHIICKSKN 2081 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~-~~~~~~~~~~~~~-~-~~~~t~~~~~~~~p~w~~~f~~~~~~~p---~~~~l~~~~~~~~ 2081 (2138)
|+|.|+|++|.|| .+.. |..||||++.+.. | ..+||+++++|+||+|||+|.|.+. ++ .++.|.++||+++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVT-PDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeC-chhccCCCEEEEEEEeCC
Confidence 8999999999999 4555 8899999999943 2 2347999999999999999999774 33 4578999999999
Q ss_pred CCCC-cccceEEEEecceeecce
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGV 2103 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~ 2103 (2138)
.+++ +.+|++.|.+.++...++
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~~ 102 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIEDRN 102 (111)
T ss_pred CCCCCCcceEEEEEHHHHhcCCC
Confidence 9975 899999999999985543
No 59
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.46 E-value=1.2e-13 Score=146.19 Aligned_cols=103 Identities=18% Similarity=0.409 Sum_probs=88.8
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEe--cCCCCccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecCCC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTI--GNGPPRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~~~ 2083 (2138)
.|.|.|+|++|.|| .+..|..||||++.+ +++..+||++++++.||.|||+|.|.+...- .+..|.|+||+++.|
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 94 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence 48999999999999 456688999999999 3445567999999999999999999865331 356899999999998
Q ss_pred C-CcccceEEEEecceeecceecceeecC
Q 000124 2084 G-KSTLGKVTIQIDKVVTEGVYSGLFNLN 2111 (2138)
Q Consensus 2084 ~-k~~~g~~~~~~~~v~~~~~~~~~~~l~ 2111 (2138)
+ .+.+|++.|.|.++...++...+|.|.
T Consensus 95 ~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 95 SRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCceeEEEEEecccccCCCCcceEEECc
Confidence 6 568999999999999989999999874
No 60
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.45 E-value=1.5e-13 Score=142.78 Aligned_cols=98 Identities=15% Similarity=0.303 Sum_probs=86.9
Q ss_pred EEEEEecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCC---CCCeEEEEEeecCCCCC-cc
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPP---KGQKLHIICKSKNTFGK-ST 2087 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p---~~~~l~~~~~~~~~~~k-~~ 2087 (2138)
|.|+|++|.||. .|..||||++.+ .|.++||++++++.||.|||+|.|.+..|+ ..+.|.|+||+++++|+ +.
T Consensus 6 l~V~v~~a~~L~--~~~~dpyv~v~~-~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~ 82 (111)
T cd04011 6 VRVRVIEARQLV--GGNIDPVVKVEV-GGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTL 82 (111)
T ss_pred EEEEEEEcccCC--CCCCCCEEEEEE-CCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCc
Confidence 899999999999 489999999999 477888999999999999999999998775 35799999999999976 89
Q ss_pred cceEEEEecceeec---ceecceeecCC
Q 000124 2088 LGKVTIQIDKVVTE---GVYSGLFNLNH 2112 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~---~~~~~~~~l~~ 2112 (2138)
+|++.|.|.+|... +-+..+|+|.+
T Consensus 83 iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 83 IGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cEEEEECCccccCCCCCcceEEEEEeeC
Confidence 99999999999775 55777788764
No 61
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.44 E-value=1.8e-13 Score=144.80 Aligned_cols=103 Identities=25% Similarity=0.462 Sum_probs=92.2
Q ss_pred ceEEEEEecccccc--cccCCCCceEEEEecCCCCcccccccc-CCCCCccccceeeecCCCC--CCeEEEEEeecCCC-
Q 000124 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVVSH-SISPEWKEGFTWAFDVPPK--GQKLHIICKSKNTF- 2083 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~p~w~~~f~~~~~~~p~--~~~l~~~~~~~~~~- 2083 (2138)
|.|.|+|++|.||+ +..++.||||++.+ .+..++|+++++ +.||.|||+|.|.+.+++. .+.|.|+||+++.|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~-~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQC-RTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEE-CCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC
Confidence 78999999999994 45589999999999 566778999985 8999999999999998753 57899999999988
Q ss_pred CCcccceEEEEecceeecceecceeecCCC
Q 000124 2084 GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2084 ~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+.+|++.|+|.+++.+|...++|+|.+.
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 457899999999999999999999999987
No 62
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.44 E-value=2.8e-13 Score=144.96 Aligned_cols=115 Identities=21% Similarity=0.419 Sum_probs=92.4
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCC------CCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCC
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG------PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~ 2082 (2138)
+|.|+|++|.|| .+..|..||||++.+++. ..+||++++++.||+|||+|.|.+. |.++.|.++||+++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~--~~~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN--PREHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc--CCCCEEEEEEEECCC
Confidence 489999999999 455789999999999533 1357999999999999999999874 457899999999999
Q ss_pred CC-CcccceEEEEecceeecceec------ceeecCCCCCCCCC-ccceEEEEE
Q 000124 2083 FG-KSTLGKVTIQIDKVVTEGVYS------GLFNLNHDNNKDSS-SRTLEIEII 2128 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~~~~v~~~~~~~------~~~~l~~~~~~~~~-~~~~~~~~~ 2128 (2138)
+| .+.+|++.|.++++...++-. .+|.|.+- ++.|+ .|.|.+.+.
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~~G~l~~~~~ 131 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-SSKSRVKGHLRLYMA 131 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-CCCCcceeEEEEEEe
Confidence 96 579999999999999876643 78898865 23333 455555554
No 63
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.44 E-value=3.2e-13 Score=143.81 Aligned_cols=110 Identities=17% Similarity=0.433 Sum_probs=89.8
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-----
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF----- 2083 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~----- 2083 (2138)
-|+|+|++|+|| .+..|+.||||++.+ ++..++|+++++++||+|||+|.|.+..+ .+.|.|+||+++.+
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~-~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQV-GKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEE-CCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCccccc
Confidence 389999999999 466689999999999 45666899999999999999999988654 57899999999863
Q ss_pred -------CCcccceEEEEecceeecceecceeecCCCCCCCCCccceEE
Q 000124 2084 -------GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEI 2125 (2138)
Q Consensus 2084 -------~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 2125 (2138)
..+.+|++.|+++.+ .+....+|.|.+.+++....|.+.+
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~--~~~~~~w~~L~~~~~~~~~~G~i~~ 125 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRL 125 (127)
T ss_pred ceeccccCCCcceEEEEEhHHc--cCCCCeEEECccCCCCCcEeEEEEE
Confidence 477999999999986 4777899999987444333444433
No 64
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.43 E-value=2.1e-13 Score=144.29 Aligned_cols=103 Identities=20% Similarity=0.281 Sum_probs=87.3
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecCCC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKNTF 2083 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~~~ 2083 (2138)
.|.|.|+|++|+|| .+..|..||||++.+..+ ..+||+++++++||+|||+|.|.+..+.. +..|+++||+++.|
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~ 94 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 48899999999999 455688999999999533 33479999999999999999999865433 56899999999998
Q ss_pred C-CcccceEEEEecceeecceecceeecC
Q 000124 2084 G-KSTLGKVTIQIDKVVTEGVYSGLFNLN 2111 (2138)
Q Consensus 2084 ~-k~~~g~~~~~~~~v~~~~~~~~~~~l~ 2111 (2138)
+ .+.+|++.|.|.++........+|.|.
T Consensus 95 ~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 5 478999999999998888888888875
No 65
>PRK09687 putative lyase; Provisional
Probab=99.43 E-value=4.3e-12 Score=152.42 Aligned_cols=254 Identities=18% Similarity=0.089 Sum_probs=203.8
Q ss_pred cCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--chh
Q 000124 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--DSA 592 (2138)
Q Consensus 515 aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--e~~ 592 (2138)
.-.++.|..+|.+.+..+|..++..|..+.. ..+++.+..+++++++.+|..++++|+.+.... ...
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~ 90 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDN 90 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHH
Confidence 3467889999999999999999999998864 345667778889999999999999999996432 245
Q ss_pred hHHHHHHH-hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhh
Q 000124 593 TINQLLAL-LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 593 aI~~Li~L-L~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
.++.|..+ +++.++.|+..++.+|+.+....... ...++..+...+.++++.+|..++.+|.++..
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----- 157 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNPLY--------SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----- 157 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--------chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence 78888877 67888899999999999874221111 12246677788888899999999999987754
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000124 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2138)
Q Consensus 672 r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNL 751 (2138)
..+++.|+.+|++.++.+|..|+.+|+++.... ..+++.|+.+|.+.+.+|+..|+.+|+.+
T Consensus 158 ------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~------------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN------------PDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC------------HHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 457899999999999999999999999994311 23788999999999999999999999976
Q ss_pred hCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHH
Q 000124 752 LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVAD 831 (2138)
Q Consensus 752 a~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~ 831 (2138)
. ...++|.|++.+.+++ ++..|+.+|++++.. .+++.|..++.. ..+...+..
T Consensus 220 ~----------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~--------------~a~p~L~~l~~~-~~d~~v~~~ 272 (280)
T PRK09687 220 K----------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK--------------TLLPVLDTLLYK-FDDNEIITK 272 (280)
T ss_pred C----------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--------------hHHHHHHHHHhh-CCChhHHHH
Confidence 4 3468999999998876 678899999998873 377889999862 235556778
Q ss_pred HHHHHH
Q 000124 832 ALEVVA 837 (2138)
Q Consensus 832 AL~ALa 837 (2138)
|.+++.
T Consensus 273 a~~a~~ 278 (280)
T PRK09687 273 AIDKLK 278 (280)
T ss_pred HHHHHh
Confidence 877764
No 66
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=4.2e-11 Score=139.48 Aligned_cols=326 Identities=13% Similarity=0.126 Sum_probs=244.3
Q ss_pred HHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC--CHHHHHHHHHHHHHHH
Q 000124 167 FVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLM 244 (2138)
Q Consensus 167 IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~--s~evq~~A~~aL~nLs 244 (2138)
--..|..+.++.++...+..+..+...++.+|..+.... +.++++-|+..++.+|... +.++.......+..-|
T Consensus 100 a~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac 175 (461)
T KOG4199|consen 100 AGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKAC 175 (461)
T ss_pred hccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 334555555544443222233457778888888886643 5678888999999999753 5667777777888878
Q ss_pred hhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHH----------HHhcCCHHHHHHhhcCCc
Q 000124 245 LAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKA----------VVAADGVPVLIGAIVAPS 314 (2138)
Q Consensus 245 ~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~----------i~e~ggL~~LI~LL~s~s 314 (2138)
..++.+++.+++.++++.+...+.+.....+-+...++++.|..+ ++.|-. +...|++..|++
T Consensus 176 ~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~E------ 248 (461)
T KOG4199|consen 176 IMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTE------ 248 (461)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHH------
Confidence 889999999999999999998886433335666778888888774 333321 121222222222
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHH
Q 000124 315 KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI 394 (2138)
Q Consensus 315 ~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~ 394 (2138)
T Consensus 249 -------------------------------------------------------------------------------- 248 (461)
T KOG4199|consen 249 -------------------------------------------------------------------------------- 248 (461)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHH----HHHHHHHHHHHhhhccchhhHHh
Q 000124 395 LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATAD----VREYLILSLTKLCRREVGIWEAI 470 (2138)
Q Consensus 395 LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~e----vq~~Aa~aL~~Ls~~s~~~~~~I 470 (2138)
.+.-.-++.+-.....+|..++-+.++++.+.+.||+..+++++.+.+.+ .-+.++..|+.++.+ ++++..|
T Consensus 249 ---al~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~I 324 (461)
T KOG4199|consen 249 ---ALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTI 324 (461)
T ss_pred ---HHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHH
Confidence 11111111244556667788888888999999999999999999885543 334566777788777 7899999
Q ss_pred hhchhHHHHHHHhc--CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHHHHHhcC
Q 000124 471 GKREGIQLLISLLG--LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCH 546 (2138)
Q Consensus 471 ~e~ggIp~LV~LL~--s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~~ 546 (2138)
++.||.+.++.++. +.++.+.+.++.+++.|+..++++...+++.|+-...++.++.. ...+++++++.++|+..+
T Consensus 325 V~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 325 VEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999884 66888999999999999998999999999999999999999876 567899999999999998
Q ss_pred ChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 547 SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 547 sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
+.+++..+.+ .+++.|+...++..+.+...+-.+|..|..+
T Consensus 405 s~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 405 SAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred hhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 8888888774 5688899888888888888888899888755
No 67
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.42 E-value=2.8e-13 Score=142.83 Aligned_cols=102 Identities=23% Similarity=0.378 Sum_probs=87.4
Q ss_pred CceEEEEEecccccc--c-ccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNLK--Q-TMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--~-~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
.|.|+|+|++|.||. + ..|..||||++.+..+ .++||+|++++.||+|||+|.|.+..+.+ +..|.|+||++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 589999999999993 3 4589999999988433 34579999999999999999998865433 56899999999
Q ss_pred CCCCC-cccceEEEEecceeecceecceeec
Q 000124 2081 NTFGK-STLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
+.+++ +.+|++.|.|.++...++.+.+|+|
T Consensus 93 ~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 93 DRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 98865 6999999999999988999999987
No 68
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.42 E-value=4.8e-13 Score=141.31 Aligned_cols=114 Identities=20% Similarity=0.432 Sum_probs=91.8
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCC-ccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-c
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP-RQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-S 2086 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~ 2086 (2138)
.|.|+|++|.|| .+..|..||||++.++ |.+ +||+++++++||+|||.|+|.+. +-.+.|.++||+++.+|+ +
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~-~~~~~kT~v~~~t~nP~Wne~f~~~~~--~~~~~l~v~v~d~~~~~~d~ 77 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVD-NEVIIRTATVWKTLNPFWGEEYTVHLP--PGFHTVSFYVLDEDTLSRDD 77 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEEC-CEeeeeeeeEcCCCCCcccceEEEeeC--CCCCEEEEEEEECCCCCCCC
Confidence 389999999999 5667899999999994 443 58999999999999999999874 335899999999999987 8
Q ss_pred ccceEEEEecceeecc-eecceeecCCCCCCCCCccceEEEE
Q 000124 2087 TLGKVTIQIDKVVTEG-VYSGLFNLNHDNNKDSSSRTLEIEI 2127 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ 2127 (2138)
.+|++.++++.....+ ....+|.|.+....++..+.+.+.+
T Consensus 78 ~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~ 119 (121)
T cd04054 78 VIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLEL 119 (121)
T ss_pred EEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEE
Confidence 9999999998887643 4788999987533334445444443
No 69
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.41 E-value=1.1e-10 Score=139.30 Aligned_cols=427 Identities=16% Similarity=0.112 Sum_probs=306.2
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhh----hchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHH
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSH----AEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e----~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~L 482 (2138)
++.+...+++....++--++.+.. .+.++.|.....+.+.++..+..++|+|.|.++.+++..+.+.||-+.+++.
T Consensus 58 v~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~ 137 (604)
T KOG4500|consen 58 VYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDV 137 (604)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhh
Confidence 667777777777655544444433 4556777777788889999999999999999999999999999996666666
Q ss_pred hc----CCc---hhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHHHHHhc-CChhHHH
Q 000124 483 LG----LSS---EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCC-HSEDIRA 552 (2138)
Q Consensus 483 L~----s~d---~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~-~sd~~r~ 552 (2138)
|+ ..+ .+.-..+.+.|.|....+.+.+..+++.|.++.|..++.-+ +....+.......||.. ..+....
T Consensus 138 L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~ 217 (604)
T KOG4500|consen 138 LKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYP 217 (604)
T ss_pred hccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhh
Confidence 64 223 23445566778888887888999999999999999988655 44444554444444432 1122233
Q ss_pred HHHHcCCcchhhhcccc-CChhHHHHHHHHHHHHHHhh-------chhhHHHHHHHhcC-CCcchHHHHHHHHHHHH---
Q 000124 553 CVESAGAVPAFLWLLKS-GGPKGQDASAMALTKLIRAA-------DSATINQLLALLLG-DSPSSKAHVIKVLGHVL--- 620 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS-~~~evq~~Aa~AL~nLs~~~-------e~~aI~~Li~LL~~-~d~~V~~~A~~AL~~La--- 620 (2138)
+..+....-.+++++.+ .+++..+.+-..|...+.++ +.+....++.+++. .+...+.....-+...+
T Consensus 218 ~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~ 297 (604)
T KOG4500|consen 218 FCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELD 297 (604)
T ss_pred hhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHh
Confidence 33344455556676654 46777777778888777653 34556666666654 22222222211111111
Q ss_pred -hhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhc-----cCCHH
Q 000124 621 -TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT-----SNTQM 694 (2138)
Q Consensus 621 -~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~-----dgs~~ 694 (2138)
......|..+.....+..++.++..+.+.+......++.+++|++. +.++|-.+++.+.+..|+.++. +|+..
T Consensus 298 vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~ 376 (604)
T KOG4500|consen 298 VLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVE 376 (604)
T ss_pred hhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 1123444555555555589999999999999999999999999999 8899999999999999999884 46778
Q ss_pred HHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCch-HHHHHH-hcCcHHHHHH
Q 000124 695 VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD-IAAEVL-LEDVVSALTR 772 (2138)
Q Consensus 695 Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e-~r~~Ii-~~g~L~~LV~ 772 (2138)
.+..+..||+|+.. |. .+|..+..+|++..++..++...+.++..-+..|..+....+ ...++. ....+..|++
T Consensus 377 ~qhA~lsALRnl~I--Pv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~ 452 (604)
T KOG4500|consen 377 RQHACLSALRNLMI--PV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD 452 (604)
T ss_pred hHHHHHHHHHhccc--cC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH
Confidence 89999999999987 66 678889999999999999999999999999999988876544 444443 4557889999
Q ss_pred HHhCCCHH-HHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 773 VLAEGTSE-GKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 773 LL~~~~~~-Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
+..+.+-. +--..-+.|.-+..+... .++.-.+.+.|++..+|.++... +...+.+|+-+|..++.
T Consensus 453 Wsks~D~aGv~gESnRll~~lIkHs~~-kdv~~tvpksg~ik~~Vsm~t~~--hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 453 WSKSPDFAGVAGESNRLLLGLIKHSKY-KDVILTVPKSGGIKEKVSMFTKN--HINMQNEALVALLSTES 519 (604)
T ss_pred hhhCCccchhhhhhhHHHHHHHHhhHh-hhhHhhccccccHHHHHHHHHHh--hHHHhHHHHHHHHHHHH
Confidence 98877644 777788888888776432 33444555677899999999644 44558999999988774
No 70
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.41 E-value=4.7e-13 Score=144.54 Aligned_cols=102 Identities=22% Similarity=0.367 Sum_probs=91.2
Q ss_pred EEEEEecccccccc-cCCCCceEEEEecC---CCCccccccccCCCCCccccceeeecCCC--------------CCCeE
Q 000124 2012 LTVTIKRGNNLKQT-MGTTNAFCRLTIGN---GPPRQTKVVSHSISPEWKEGFTWAFDVPP--------------KGQKL 2073 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~t~~~~~~~~p~w~~~f~~~~~~~p--------------~~~~l 2073 (2138)
|+|+|++|+||..+ .|..||||++.++. +..++|+++++++||.|||+|.|.+..+. ..++|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 68999999999654 68999999999964 56667999999999999999999988763 46799
Q ss_pred EEEEeecCCC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2074 HIICKSKNTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2074 ~~~~~~~~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+|+||+++.+ +.+.+|+|.|.|+++...|....+|.|.+.
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 9999999998 566699999999999999999999999988
No 71
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.41 E-value=3.8e-13 Score=142.38 Aligned_cols=103 Identities=21% Similarity=0.325 Sum_probs=86.0
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEec--CCCCccccccccCCCCCccccceeeec--CCCCCCeEEEEEeecCCC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIG--NGPPRQTKVVSHSISPEWKEGFTWAFD--VPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~~p~w~~~f~~~~~--~~p~~~~l~~~~~~~~~~ 2083 (2138)
+.|.|+|++|.|| .+..|..||||++.+. ++.+++|+|+++++||.|||+|.|..- +.+....|+++||++++|
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~ 95 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF 95 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence 5799999999999 4446889999999993 445567999999999999999999631 223456899999999999
Q ss_pred CC-cccceEEEEecceeecceecceeecCC
Q 000124 2084 GK-STLGKVTIQIDKVVTEGVYSGLFNLNH 2112 (2138)
Q Consensus 2084 ~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~ 2112 (2138)
|+ +.+|++.|.+.++-..+....+|.|.+
T Consensus 96 ~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 96 SRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred cCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 75 569999999999988888888888764
No 72
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.41 E-value=4.8e-13 Score=141.40 Aligned_cols=101 Identities=21% Similarity=0.379 Sum_probs=82.4
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecC--CCCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDV--PPKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~--~p~~~~l~~~~~~~ 2080 (2138)
+|.|.|+|++|.|| .+..|..||||++.+..+ ..+||++++++.||.|||+|.|.+-. ......|.++||++
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 38999999999999 456688999999999542 45579999999999999999997422 22568999999999
Q ss_pred CCCC-CcccceEEEEecceeecceecceeec
Q 000124 2081 NTFG-KSTLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2081 ~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
+.++ .+.+|++.|.|++....+ -..+|.|
T Consensus 95 ~~~~~~~~iG~~~i~l~~~~~~~-~~~W~~L 124 (125)
T cd04031 95 DRDGENDFLGEVVIDLADALLDD-EPHWYPL 124 (125)
T ss_pred CCCCCCcEeeEEEEecccccccC-CcceEEC
Confidence 9886 478999999999944444 3577776
No 73
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.41 E-value=4.7e-13 Score=141.12 Aligned_cols=100 Identities=23% Similarity=0.381 Sum_probs=85.7
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCC----CC---ccccccccCCCCCccccceeeecC--CCCCCeEEEEEeec
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PP---RQTKVVSHSISPEWKEGFTWAFDV--PPKGQKLHIICKSK 2080 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~---~~t~~~~~~~~p~w~~~f~~~~~~--~p~~~~l~~~~~~~ 2080 (2138)
|+|+|++|.|| ++. |..||||++.+ .| .+ +||||+++++||.|||+|.|.+.. -|....|++.||++
T Consensus 2 L~V~Vi~A~~L~~~d~-g~~DPYVkV~l-~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 2 VTVKVVAANDLKWQTT-GMFRPFVEVNL-IGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred EEEEEEECcCCCcccC-CCCCCEEEEEE-ecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 89999999999 444 88999999998 32 22 259999999999999999999853 34667899999999
Q ss_pred CCCCCc-ccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFGKS-TLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~k~-~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+|++ .+|++.+.+.+|...|....+|.|.+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 977755 799999999999999999999999665
No 74
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.40 E-value=4.7e-13 Score=148.49 Aligned_cols=105 Identities=21% Similarity=0.333 Sum_probs=87.7
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEec----CCCCccccccccCCCCCccccceeeecCC--CCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG----NGPPRQTKVVSHSISPEWKEGFTWAFDVP--PKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~p~w~~~f~~~~~~~--p~~~~l~~~~~~~ 2080 (2138)
.|.|+|+|++|.|| .+..|..||||++.+. +...+||+|++++.||.|||+|.|..-.+ ..+..|.|+||++
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~ 105 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDH 105 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeC
Confidence 38999999999999 4555889999999883 23455799999999999999999964211 1346899999999
Q ss_pred CCCC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.|+ .+.+|+|.|.+.++..+|.-.++|.|.++
T Consensus 106 d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~ 139 (162)
T cd04020 106 DKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE 139 (162)
T ss_pred CCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence 9997 68899999999999988888888887765
No 75
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.40 E-value=3.5e-11 Score=165.50 Aligned_cols=275 Identities=20% Similarity=0.160 Sum_probs=224.6
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHH
Q 000124 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2138)
Q Consensus 432 ~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~ 511 (2138)
..++.|+..|.+.++.+|..|+..|..+.. .+.++.|++.|+++++.+|..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 456788999999999999999999987642 345788999999999999999999998885411
Q ss_pred HHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhch
Q 000124 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~ 591 (2138)
...+.|...|.+.++.+|..++..|..+... ....|+..+++.++.++..|+.+|..+.
T Consensus 684 ----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d~~VR~~Av~aL~~~~----- 742 (897)
T PRK13800 684 ----PPAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDPDHRVRIEAVRALVSVD----- 742 (897)
T ss_pred ----CchHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCCCHHHHHHHHHHHhccc-----
Confidence 1235788889999999999999999987531 1235677889999999999999999863
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhh
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
..+.|..++.++++.|+..+..+|+.+... ....++.|..+++++++.+|..|+.+|.++...
T Consensus 743 -~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~------------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---- 805 (897)
T PRK13800 743 -DVESVAGAATDENREVRIAVAKGLATLGAG------------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP---- 805 (897)
T ss_pred -CcHHHHHHhcCCCHHHHHHHHHHHHHhccc------------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----
Confidence 235688899999999999999998875311 122478899999999999999999999998651
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000124 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2138)
Q Consensus 672 r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNL 751 (2138)
...+..++..|++.++.+|..|+.+|+.+.. + ..++.|+.+|++++..||..|+.+|+.+
T Consensus 806 ------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 806 ------PDDVAAATAALRASAWQVRQGAARALAGAAA--D------------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ------chhHHHHHHHhcCCChHHHHHHHHHHHhccc--c------------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 2234668899999999999999999998853 2 2679999999999999999999999987
Q ss_pred hCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHH
Q 000124 752 LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALH 790 (2138)
Q Consensus 752 a~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~ 790 (2138)
..++ ...+.|...+.+.+..||+.|.++|.
T Consensus 866 ~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 PGDP---------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 4333 35778889999999999999999985
No 76
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.39 E-value=1.9e-12 Score=141.89 Aligned_cols=123 Identities=16% Similarity=0.233 Sum_probs=94.4
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEe----cCCCCccccccccCCCCCccccceeeecCC-------CCCCeEEEE
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTI----GNGPPRQTKVVSHSISPEWKEGFTWAFDVP-------PKGQKLHII 2076 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~-------p~~~~l~~~ 2076 (2138)
|-|+|...++.++ -...|+.||||++.| ++..++||+|+++|+||+|||+|.|.+... =....|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3355555555555 233578999999998 444455799999999999999999998533 114679999
Q ss_pred EeecCCCC--CcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecCCCC
Q 000124 2077 CKSKNTFG--KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNRIS 2134 (2138)
Q Consensus 2077 ~~~~~~~~--k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~ 2134 (2138)
||+++.|. .+.||+|.|.|+++..+..+.+.|+|.+. +...-+.|+++++=.+-.+
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~--~k~~Gg~l~v~ir~r~p~~ 141 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG--RKATGGKLEVKVRLREPLT 141 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC--CCCcCCEEEEEEEecCCCc
Confidence 99999983 59999999999999999999999999865 4455577778877655443
No 77
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.38 E-value=4.1e-13 Score=143.83 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=87.2
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~ 2080 (2138)
-+|.|+|+|++|.|| .+..|..||||++.+.. ...+||+|+++++||+|||+|.|.+..+.. ...|.++||++
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 369999999999999 45568899999999953 334579999999999999999998875433 46899999999
Q ss_pred CCCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+++ +.+|+|.|.++. .+.+...+|.+.+.
T Consensus 91 d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~ 122 (133)
T cd08384 91 DIGKSNDYIGGLQLGINA--KGERLRHWLDCLKN 122 (133)
T ss_pred CCCCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence 98865 789999999986 45567788988877
No 78
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.38 E-value=9.8e-13 Score=140.58 Aligned_cols=111 Identities=18% Similarity=0.385 Sum_probs=94.9
Q ss_pred hcCCceEEEEEecccccc--cccCCCCceEEEEecC----CCCccccccccCCCCCccccceeeecCCCCCCeEEEEEee
Q 000124 2006 HCLPGCLTVTIKRGNNLK--QTMGTTNAFCRLTIGN----GPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKS 2079 (2138)
Q Consensus 2006 ~~~~g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~ 2079 (2138)
.--+|.|+|+|++|.||. +..|..||||++.+.. ...++|++++++.+|.|||+|.|.+..+...+.|.++||+
T Consensus 9 ~~~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d 88 (131)
T cd04026 9 SVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWD 88 (131)
T ss_pred EECCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEE
Confidence 344699999999999994 3457899999999953 2455799999999999999999998876677899999999
Q ss_pred cCCCC-CcccceEEEEecceeecceecceeecCCCCCCCCC
Q 000124 2080 KNTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSS 2119 (2138)
Q Consensus 2080 ~~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 2119 (2138)
++.++ .+.+|++.+.|+++.. +....+|.|.+. |+|.
T Consensus 89 ~~~~~~~~~iG~~~~~l~~l~~-~~~~~w~~L~~~--~~~~ 126 (131)
T cd04026 89 WDRTTRNDFMGSLSFGVSELIK-MPVDGWYKLLNQ--EEGE 126 (131)
T ss_pred CCCCCCcceeEEEEEeHHHhCc-CccCceEECcCc--cccc
Confidence 99885 5799999999999985 478899999998 7775
No 79
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.38 E-value=1.3e-12 Score=140.93 Aligned_cols=100 Identities=21% Similarity=0.394 Sum_probs=82.5
Q ss_pred eEEEEEeccccc-ccccCCCCceEEEEecCC------------CCccccccccCCCCCc-cccceeeecCCCCCCeEEEE
Q 000124 2011 CLTVTIKRGNNL-KQTMGTTNAFCRLTIGNG------------PPRQTKVVSHSISPEW-KEGFTWAFDVPPKGQKLHII 2076 (2138)
Q Consensus 2011 ~l~v~v~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~t~~~~~~~~p~w-~~~f~~~~~~~p~~~~l~~~ 2076 (2138)
+.+|++++|.|| ++..|++||||++.+..| +.+||+|+++++||+| ||+|.|.+. .+|.|.|+
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~---~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL---PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC---CCCEEEEE
Confidence 478999999999 666799999999999543 3567999999999999 999999883 57999999
Q ss_pred EeecCCCC----CcccceEEEEecceeecceecc---eeecCCC
Q 000124 2077 CKSKNTFG----KSTLGKVTIQIDKVVTEGVYSG---LFNLNHD 2113 (2138)
Q Consensus 2077 ~~~~~~~~----k~~~g~~~~~~~~v~~~~~~~~---~~~l~~~ 2113 (2138)
|||+++.| ++.+|++.|++.+++..+.--+ .|.|.-.
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 99987654 5999999999999986643322 3666644
No 80
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.38 E-value=2.9e-10 Score=135.89 Aligned_cols=433 Identities=15% Similarity=0.122 Sum_probs=309.3
Q ss_pred CCHHHHHHHHHHHHHhhhccchhhHHh----hhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCch
Q 000124 444 ATADVREYLILSLTKLCRREVGIWEAI----GKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIP 519 (2138)
Q Consensus 444 ss~evq~~Aa~aL~~Ls~~s~~~~~~I----~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp 519 (2138)
.+..+......+++..+.+ +..+..+ +..+.+++|.+..++++.++.....++|+|+|..+.++|..+.+.||-.
T Consensus 54 ~~~tv~~~qssC~A~~sk~-ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRSKN-EVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred ccchhhhhhHHHHHHHhhh-HHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 3455556666666666644 2222222 3467789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhC-------CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccc--cCChhHHHHHHHHHHHHHHh--
Q 000124 520 PLVQLLEAG-------SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK--SGGPKGQDASAMALTKLIRA-- 588 (2138)
Q Consensus 520 ~LV~LLks~-------d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk--S~~~evq~~Aa~AL~nLs~~-- 588 (2138)
.+++.|+.. +.+.-..+.+.|.|...++++.++.+.+.|.++.|..... ..+....+.......|+..-
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 999988743 2355567778999999999999999999999998876553 34445555555444444322
Q ss_pred -------hchhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC-CCHHHHH----
Q 000124 589 -------ADSATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-SNEENQE---- 655 (2138)
Q Consensus 589 -------~e~~aI~~Li~LL~~~-d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks-~s~evre---- 655 (2138)
.+......+.+++... .+++++...+.+... ..+|.++-.+++.|.+..++.+++. .+..-++
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~----aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~ 288 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKA----AENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLN 288 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHH----hcCcceeeehhhcchHHHHHHHHHhcccccchHHHHH
Confidence 1345566777777643 345566665555544 3445566667889999999998876 2211122
Q ss_pred ---HHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhh
Q 000124 656 ---YAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKL 732 (2138)
Q Consensus 656 ---~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~L 732 (2138)
.++....-|..++............++.+...+++++......++-+++|+++ .|..+..+++.+.+..|+++
T Consensus 289 l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR----~D~~ci~~v~~~~~nkL~~~ 364 (604)
T KOG4500|consen 289 LFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFAR----RDDICIQLVQKDFLNKLISC 364 (604)
T ss_pred HHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc----cchHHHHHHHHHHHHHHHHH
Confidence 23333333333344444333334478888889999999999999999999998 34788889999999999999
Q ss_pred hhc-----CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhh
Q 000124 733 AKT-----SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQ 807 (2138)
Q Consensus 733 L~s-----~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~ 807 (2138)
+.. ++.+++.+++.||.||.--..++..+...|....+...+....|.+..+-...+..+...+ +.+.-+..
T Consensus 365 l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q---e~~a~eL~ 441 (604)
T KOG4500|consen 365 LMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ---EYIACELA 441 (604)
T ss_pred HHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch---HHHHHHHh
Confidence 854 5677888999999999988888889999999999999999999988888877776665543 33333333
Q ss_pred h-hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHH
Q 000124 808 C-RFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILS 886 (2138)
Q Consensus 808 ~-~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~ 886 (2138)
. ...+.+||+-..+.+.. ....+..+.+.++-+..+....+. .....+.++..+.+....|-.+|..|+.+|.
T Consensus 442 kn~~l~ekLv~Wsks~D~a-Gv~gESnRll~~lIkHs~~kdv~~-----tvpksg~ik~~Vsm~t~~hi~mqnEalVal~ 515 (604)
T KOG4500|consen 442 KNPELFEKLVDWSKSPDFA-GVAGESNRLLLGLIKHSKYKDVIL-----TVPKSGGIKEKVSMFTKNHINMQNEALVALL 515 (604)
T ss_pred cCHHHHHHHHHhhhCCccc-hhhhhhhHHHHHHHHhhHhhhhHh-----hccccccHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 3 55677888887765544 357778888888776422211111 0112345889999999999999999999998
Q ss_pred HhhccCCc
Q 000124 887 RLCGDQPA 894 (2138)
Q Consensus 887 ~L~~~~~~ 894 (2138)
-.-.-++.
T Consensus 516 ~~~~~yl~ 523 (604)
T KOG4500|consen 516 STESKYLI 523 (604)
T ss_pred HHHHHhcc
Confidence 77665544
No 81
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.9e-07 Score=124.30 Aligned_cols=817 Identities=15% Similarity=0.158 Sum_probs=436.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHhcHHHHH-HHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCc-hhHHHHHh-cCCh
Q 000124 51 NMSSPQERELITMRILTIAKAKKEARL-LIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDE-DLRLKVLL-GGCI 127 (2138)
Q Consensus 51 ~s~s~~ere~AL~~L~~L~~~~d~ak~-lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e-~~r~~v~~-~G~I 127 (2138)
++.++..|+.|+..|..+...-.+..+ .+- ...+.+.+-+.+++..+|..+++++..++... .++..+.. ...+
T Consensus 128 ~S~~~~~rE~al~il~s~~~~~~~~~~~~~~---~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~ll 204 (1075)
T KOG2171|consen 128 KSPNPSLRESALLILSSLPETFGNTLQPHLD---DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLL 204 (1075)
T ss_pred cCCCcchhHHHHHHHHhhhhhhccccchhHH---HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 456778899999999888654322211 221 24455556666666669999999998876443 23322222 2667
Q ss_pred HHHHHhhcc----CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhc
Q 000124 128 PPLLSLLKS----ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCG 203 (2138)
Q Consensus 128 p~Lv~LL~s----ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs 203 (2138)
|.++..+.. +|.+.-..+.+.|..+.... ...-+..+.+ +|..-++...++. -+..++..|+..|..++.
T Consensus 205 P~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~---pk~l~~~l~~--ii~~~l~Ia~n~~-l~~~~R~~ALe~ivs~~e 278 (1075)
T KOG2171|consen 205 PSLLNVLQEVIQDGDDDAAKSALEALIELLESE---PKLLRPHLSQ--IIQFSLEIAKNKE-LENSIRHLALEFLVSLSE 278 (1075)
T ss_pred HHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc---hHHHHHHHHH--HHHHHHHHhhccc-ccHHHHHHHHHHHHHHHH
Confidence 878877755 46777788999999998631 1222333333 5666666666555 355789999999998887
Q ss_pred CCCchhHHHHHhC--cHHHHHHhhccCC----------------HHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHH
Q 000124 204 DKDGYWRATLEAG--GVDIIVGLLSSDN----------------AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQ 265 (2138)
Q Consensus 204 ~~e~r~~aI~e~G--GI~~Lv~lL~s~s----------------~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~ 265 (2138)
......+.....| -++.++..+.... ......|.++|-.++..-+ ...+-.-..+.+-.
T Consensus 279 ~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~---g~~v~p~~~~~l~~ 355 (1075)
T KOG2171|consen 279 YAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG---GKQVLPPLFEALEA 355 (1075)
T ss_pred hhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC---hhhehHHHHHHHHH
Confidence 6432222211222 2455555544311 1144566777777773211 11111224455555
Q ss_pred HhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHH
Q 000124 266 LVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALV 345 (2138)
Q Consensus 266 LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI 345 (2138)
+++ +.+...|..+..+|..++.++.+.-.... ...++.++..+.+|++. +|-.|+-|+..++....+.+
T Consensus 356 ~l~-S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dphpr---------Vr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 356 MLQ-STEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPR---------VRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred Hhc-CCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHH---------HHHHHHHHHHhhhhhhcHHH
Confidence 666 57788899999999988887554433322 45677777888888765 55666666666654433332
Q ss_pred HHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCc---
Q 000124 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI--- 422 (2138)
Q Consensus 346 ~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~--- 422 (2138)
. ...+..+.+.|+..+++.....++.+++.++-+....-
T Consensus 425 q--------------------------------------k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~ 466 (1075)
T KOG2171|consen 425 Q--------------------------------------KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS 466 (1075)
T ss_pred H--------------------------------------HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH
Confidence 2 01123455788888888877779999999998885431
Q ss_pred hhHHHHhhhchHH-HHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCc-h---hhHHHHHHH
Q 000124 423 FLSQWVSHAEAKK-VLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSS-E---QHQEYAVQL 497 (2138)
Q Consensus 423 ~~~~~L~e~~gI~-~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d-~---~Vr~~Aa~a 497 (2138)
.+...+ .+.++ .+..|+.++.+.+|+.++.+++..+... .....-.-...+|.|...+.+.+ . ..|-....+
T Consensus 467 ~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA-~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEc 543 (1075)
T KOG2171|consen 467 ILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA-QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMEC 543 (1075)
T ss_pred HHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHH
Confidence 111111 12233 4555677888999999999999887652 11111122456888999887655 2 255566666
Q ss_pred HHHHhhcCchhHHHHHhcCCchHHHHHh---hhCCHHHHHHHHHHHHHHhcC-ChhHHHHHHHcCCcchhhh--------
Q 000124 498 IAILTEQVDDSKWAITAAGGIPPLVQLL---EAGSQKAREVAAHVLWILCCH-SEDIRACVESAGAVPAFLW-------- 565 (2138)
Q Consensus 498 L~nLa~~s~e~r~~I~~aGaIp~LV~LL---ks~d~~vre~Aa~aL~nLs~~-sd~~r~~I~e~GaI~aLv~-------- 565 (2138)
+.-++......+..-.....+..+..+- .+.+...+........+++.- .++...++ .-.+++++.
T Consensus 544 isli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L--~~Vmppl~~ta~~~p~~ 621 (1075)
T KOG2171|consen 544 LSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFL--PVVMPPLLKTARLDPDV 621 (1075)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHH--HHHhHHHHHhhccCCcc
Confidence 6666653222222222222333333321 111333444444444444320 00000000 001111110
Q ss_pred -c---------------------------cccCChhHHHHHHHHHHHHHHhhch-------hhHHH-HHHHhcCCCcchH
Q 000124 566 -L---------------------------LKSGGPKGQDASAMALTKLIRAADS-------ATINQ-LLALLLGDSPSSK 609 (2138)
Q Consensus 566 -L---------------------------LkS~~~evq~~Aa~AL~nLs~~~e~-------~aI~~-Li~LL~~~d~~V~ 609 (2138)
+ .++..-+-+..|+.+|+.++..... .+... +..+.-.-.+.|+
T Consensus 622 ~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR 701 (1075)
T KOG2171|consen 622 ALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVR 701 (1075)
T ss_pred cCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHH
Confidence 0 0111123467777788777655321 22231 2222234556788
Q ss_pred HHHHHHHHHHHhhh-----cchHHHHhhhcccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhc------Chhhhhhhhh
Q 000124 610 AHVIKVLGHVLTMA-----LQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSM------RQDICGSLAT 677 (2138)
Q Consensus 610 ~~A~~AL~~La~~~-----~~~d~v~~~l~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~------~~e~r~~Ive 677 (2138)
..+++++..++... ..+...+.. -.+..+.++.-++.+ +.++.......+++.... +++..+.+.
T Consensus 702 ~aa~~~~p~ll~~~~~A~~~~p~~l~~l--~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~- 778 (1075)
T KOG2171|consen 702 KAAAESMPQLLTCALKACQGGPEYLKQL--WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALL- 778 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHH--HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHH-
Confidence 88888888876542 122222111 233456666655544 444444444444433211 111111110
Q ss_pred CCCHHHHHHH-----------------------hccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh
Q 000124 678 DEIVNPCMRL-----------------------LTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK 734 (2138)
Q Consensus 678 ~GaV~~Lv~L-----------------------L~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~ 734 (2138)
.+....+... +.+.+...-..+...+..+...... .. ...=.++.+.++.++.
T Consensus 779 ~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~--~f--~p~f~~~~p~iv~~l~ 854 (1075)
T KOG2171|consen 779 GGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKG--SF--LPFFENFLPLIVKLLK 854 (1075)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccc--cc--cHHHHHHHHHHHHHHh
Confidence 0111111111 0111222333444444555442211 11 1122346777888888
Q ss_pred cCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHH
Q 000124 735 TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLT 814 (2138)
Q Consensus 735 s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~ 814 (2138)
++..--|.-|+.++.-+...-.-...-...+.+|.+..++.+.+++||++|+.-++-++.... +.++ -.+....+.
T Consensus 855 ~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g--~~y~--~v~~~~l~~ 930 (1075)
T KOG2171|consen 855 SKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGG--EDYA--PVCSEALPL 930 (1075)
T ss_pred cCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--cchH--HHHHHHHHH
Confidence 877666888888888776533222233345688999999999999999999999999998643 2222 224556777
Q ss_pred HHHhhccCC----CCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCC-hHHHHHHHHHHHHhh
Q 000124 815 LVDSLNAMD----MNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGP-PPLQDKAIEILSRLC 889 (2138)
Q Consensus 815 LV~LL~s~~----~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~-~~vq~~AieiL~~L~ 889 (2138)
|+..+.... +.......|..+++.+......+. . .++.++.+...+-..+ .+----...-|+.|.
T Consensus 931 L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i---------~-vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~ 1000 (1075)
T KOG2171|consen 931 LVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRI---------P-VDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLY 1000 (1075)
T ss_pred HHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccC---------c-HHHHHHHHHHhCCCccchhhhhhHHHHHHHHH
Confidence 777776432 223334555566665553322111 0 2223333333333222 223334466777877
Q ss_pred ccCCc-hhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHHHhcccchhhHHHHH-hhcCCcHHHHHH
Q 000124 890 GDQPA-VLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDAL-DLSGYLKPLIYA 957 (2138)
Q Consensus 890 ~~~~~-~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~a~k~~~~~~~~~L-~~~g~~~~~i~~ 957 (2138)
..++. +.+.... .---|.+.....+.+...+-+...+ +++.+.|.|=+ .-... +..|.++++.+.
T Consensus 1001 e~n~p~v~~~~n~-~ip~i~~v~~~~~~~~~~~~~~~~~-r~~~ilkq~~~-~~~~~~~~~~~L~~~~~~ 1067 (1075)
T KOG2171|consen 1001 ESNHPIVLGPNNQ-NIPKILSVCAESLADKKIEPRSTLA-RVIEILKQFLA-PPSQFAALLATLPPDQQQ 1067 (1075)
T ss_pred HhCCCeeeCCCcc-cchHHHHHHHhhhhccCCCccchHH-HHHHHHHHHhc-CHHHHHHHHHhCCHHHHH
Confidence 76644 4432222 2222445555566777777787777 67666665544 11111 445555555443
No 82
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.37 E-value=7.6e-13 Score=144.85 Aligned_cols=91 Identities=21% Similarity=0.413 Sum_probs=80.8
Q ss_pred EEEEEeccccccc--cc--------------CCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEE
Q 000124 2012 LTVTIKRGNNLKQ--TM--------------GTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHI 2075 (2138)
Q Consensus 2012 l~v~v~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~ 2075 (2138)
|.|+|++|+||.. .. |..||||++.| .|.+.||+|+++++||+|||+|.|.+..|+..+.|.|
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~-~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSF-AGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEE-CCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 7899999999943 11 36899999999 6777789999999999999999999888888999999
Q ss_pred EEeecCCC-CCcccceEEEEecceeecce
Q 000124 2076 ICKSKNTF-GKSTLGKVTIQIDKVVTEGV 2103 (2138)
Q Consensus 2076 ~~~~~~~~-~k~~~g~~~~~~~~v~~~~~ 2103 (2138)
+|||++.+ +.+.+|++.|.+.++..+|.
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~ 109 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGD 109 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCc
Confidence 99999998 66779999999999988764
No 83
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.36 E-value=2.5e-12 Score=136.34 Aligned_cols=114 Identities=18% Similarity=0.332 Sum_probs=90.6
Q ss_pred eEEEEEecccccc--cccCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-
Q 000124 2011 CLTVTIKRGNNLK--QTMGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK- 2085 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k- 2085 (2138)
.|+|+|.+|.||. +..|..||||++.++++ ..+||+++++++||.|||+|.|.+..+ ..+.|.|+||+++.+|+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCCCCCC
Confidence 4899999999994 45588999999998544 234799999999999999999999876 57899999999999865
Q ss_pred cccceEEEEecceeecc---eecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2086 STLGKVTIQIDKVVTEG---VYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
+.+|++.++|+.+.... ....+|.|.+. |+ +.+.+.|.+.
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~----g~---i~l~~~~~~~ 123 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDTQ----GR---LLLRVSMEGE 123 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCCC----Ce---EEEEEEEeee
Confidence 46999999998875532 33457888653 44 4477777654
No 84
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.36 E-value=1.2e-12 Score=138.22 Aligned_cols=104 Identities=16% Similarity=0.241 Sum_probs=88.3
Q ss_pred CceEEEEEeccccccc---ccCCCCceEEEEecC--CCCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecCC
Q 000124 2009 PGCLTVTIKRGNNLKQ---TMGTTNAFCRLTIGN--GPPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKNT 2082 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~~ 2082 (2138)
.|.|+|+|++|+||.. ..|..||||++.+.. ...++|+++++++||+|||+|.|.+..... ...|.|+||+++.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 4679999999999943 358899999999842 344579999999999999999999866543 3589999999988
Q ss_pred CC-CcccceEEEEecceeecceecceeecCC
Q 000124 2083 FG-KSTLGKVTIQIDKVVTEGVYSGLFNLNH 2112 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~ 2112 (2138)
++ .+.+|++.|.|+++...+..+.+|.|.+
T Consensus 93 ~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 93 FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 85 6889999999999999998889998864
No 85
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.35 E-value=5.8e-11 Score=163.40 Aligned_cols=277 Identities=22% Similarity=0.141 Sum_probs=222.3
Q ss_pred chhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
...++.|++.|+++++.+|..|+..|..+.. .+.++.|+.+|+++++.+|..|+.+|..+...
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~------ 682 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEV------ 682 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------
Confidence 4457889999999999999999999988764 34789999999999999999999999888431
Q ss_pred HHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000124 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~ 632 (2138)
....+.|...+++.++.+|..++.+|..+.. +....+++.|.+.++.++..+..+|+.+
T Consensus 683 ----~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~----~~~~~l~~~L~D~d~~VR~~Av~aL~~~------------- 741 (897)
T PRK13800 683 ----LPPAPALRDHLGSPDPVVRAAALDVLRALRA----GDAALFAAALGDPDHRVRIEAVRALVSV------------- 741 (897)
T ss_pred ----cCchHHHHHHhcCCCHHHHHHHHHHHHhhcc----CCHHHHHHHhcCCCHHHHHHHHHHHhcc-------------
Confidence 1223567778888999999999999988742 2245788899999999999988888753
Q ss_pred hcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 000124 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 633 l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
+..+.|..++.++++++|..++.+|..+... ....++.|..+++|.++.+|..|+.+|+++.. +.
T Consensus 742 ----~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~~ 806 (897)
T PRK13800 742 ----DDVESVAGAATDENREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPLVRAAALAALAELGC--PP 806 (897)
T ss_pred ----cCcHHHHHHhcCCCHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cc
Confidence 1234567789999999999999999998752 12347889999999999999999999999864 11
Q ss_pred ccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
..+..|+..|.+++..||..|+.+|+.+. .+..++.|+.++.+.+..||..|+++|.++
T Consensus 807 -----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 807 -----------DDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred -----------hhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 13467888999999999999999999765 345679999999999999999999999987
Q ss_pred hhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHH
Q 000124 793 LKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVAL 838 (2138)
Q Consensus 793 ~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~ 838 (2138)
..+ ......|...+++. +..++.+|..+|..
T Consensus 866 ~~~-------------~~a~~~L~~al~D~--d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 866 PGD-------------PAARDALTTALTDS--DADVRAYARRALAH 896 (897)
T ss_pred CCC-------------HHHHHHHHHHHhCC--CHHHHHHHHHHHhh
Confidence 321 23567788888644 44569999988863
No 86
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.35 E-value=8.2e-13 Score=142.20 Aligned_cols=103 Identities=17% Similarity=0.280 Sum_probs=84.9
Q ss_pred CceEEEEEecccccc--cccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~ 2081 (2138)
+|.|+|+|++|.||. +..|..||||++++..| +++||+|+++++||+|||+|.|.+..... ...|.|+||+++
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 589999999999994 56689999999998433 34579999999999999999998753323 468999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+|+ +.+|+|.|.+..+ .-+...+|.+...
T Consensus 94 ~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred CCCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 9976 7799999999987 4446677777776
No 87
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.35 E-value=3.7e-12 Score=133.06 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=86.8
Q ss_pred EEEEEecccccccccCCCCceEEEEecCCC-CccccccccCCCCCccccceeeecCCCCC-CeEEEEEeecCCCCCcccc
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNGP-PRQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHIICKSKNTFGKSTLG 2089 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~~~~~~~~~~k~~~g 2089 (2138)
|.|+|++|.||... |..||||++.+ +|. .++||++++ .||.|||+|+|.+...=.+ ..|.|++|++++++++ .|
T Consensus 2 L~v~vi~a~~l~~~-~~~dpyv~v~~-~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~-~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK-GTRDPYCTVSL-DQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD-IV 77 (117)
T ss_pred eEEEEEEecCCCcC-CCCCceEEEEE-CCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe-eE
Confidence 78999999999887 99999999999 454 457999999 9999999999987543112 4678888998877542 45
Q ss_pred eEEEEecceeecceecceeecCCCCCCCCCccceEEEEE
Q 000124 2090 KVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2090 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
...+.|+..-..+....+|+|.+..++....+.+.++++
T Consensus 78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 116 (117)
T cd08383 78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR 116 (117)
T ss_pred EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence 555666666668889999999886444445565556664
No 88
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.34 E-value=3.7e-12 Score=132.83 Aligned_cols=101 Identities=21% Similarity=0.330 Sum_probs=88.1
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-ccc
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-STL 2088 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~~~ 2088 (2138)
|+|+|++|.|| .+..|..||||++.+++.+.++|++++++.||.|||+|.|.+.++ ..+.+.++||+++.+++ +.+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCCCCCCCce
Confidence 68999999999 344578899999999433335799999999999999999998766 67899999999999864 589
Q ss_pred ceEEEEecceeecceecceeecCCC
Q 000124 2089 GKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2089 g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
|++.+.++++...+.+..++.|.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCC
Confidence 9999999999998899999999876
No 89
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.33 E-value=2.3e-12 Score=141.36 Aligned_cols=97 Identities=24% Similarity=0.402 Sum_probs=84.0
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCC----------------------------CccccccccCCCCCccc
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----------------------------PRQTKVVSHSISPEWKE 2058 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----------------------------~~~t~~~~~~~~p~w~~ 2058 (2138)
.|.|.|+|++|.|| .+..|..||||++.+..+. .++|+|+++++||+|||
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE 106 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE 106 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc
Confidence 35699999999999 5667999999999995432 24699999999999999
Q ss_pred cceeeecCCCCCCeEEEEEeecCCCCCcccceEEEEecceeecceecceeec
Q 000124 2059 GFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNL 2110 (2138)
Q Consensus 2059 ~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l 2110 (2138)
+|.|.+.++ .++.|.|+||+++ .+.+|++.|.++++... .+..+|.|
T Consensus 107 ~F~f~v~~~-~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~-~~d~W~~L 153 (153)
T cd08676 107 TFRFEVEDV-SNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC-GLDSWFKL 153 (153)
T ss_pred EEEEEeccC-CCCEEEEEEEecC---CCeEEEEEEEHHHhCCC-CCCCeEeC
Confidence 999999876 5899999999998 78999999999999954 47888876
No 90
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.33 E-value=3.5e-12 Score=135.61 Aligned_cols=113 Identities=19% Similarity=0.378 Sum_probs=89.1
Q ss_pred eEEEEEeccccc-ccccCCCCceEEEEecCCC-CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Ccc
Q 000124 2011 CLTVTIKRGNNL-KQTMGTTNAFCRLTIGNGP-PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KST 2087 (2138)
Q Consensus 2011 ~l~v~v~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~~ 2087 (2138)
-|.|+|.+|+.+ .+..|+.||||++.++ |. .++|+++++++||+|||+|+|.+. .++.|.|+||+++.++ .+.
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~-~~~~~kT~v~~~t~~P~Wne~f~~~~~---~~~~l~~~V~d~~~~~~~~~ 78 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVD-GQPPKKTEVSKKTSNPKWNEHFTVLVT---PQSTLEFKVWSHHTLKADVL 78 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEEC-CcccEEeeeeCCCCCCccccEEEEEeC---CCCEEEEEEEeCCCCCCCcE
Confidence 489999999855 3445889999999994 55 667999999999999999999975 4689999999999885 578
Q ss_pred cceEEEEecceeec--cee---cceeecCCCCC-CCCCccceEEEE
Q 000124 2088 LGKVTIQIDKVVTE--GVY---SGLFNLNHDNN-KDSSSRTLEIEI 2127 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~--~~~---~~~~~l~~~~~-~~~~~~~~~~~~ 2127 (2138)
+|++.|+|+++..+ |.+ .+.|.|...++ .-++.|.+++++
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999999864 444 34688875521 114456666665
No 91
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=5.5e-07 Score=119.94 Aligned_cols=745 Identities=14% Similarity=0.155 Sum_probs=407.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCC-CChh
Q 000124 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLS-DDHV 162 (2138)
Q Consensus 85 gVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~n-kd~~ 162 (2138)
.+..|+.-|.+++.+++..|-..+.++...+. ..+.|..++.. +|+++|.-|+-.+..++..-.+ -+.+
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 45667777788888999999999988754332 56888888887 7999999999999888753111 1222
Q ss_pred hHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHH
Q 000124 163 GMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2138)
Q Consensus 163 gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~ 241 (2138)
.+.. +-..|+..+.... .+.++....+++..+.+.. +..|.. .++.|.+...++++..|+.+..+|+
T Consensus 76 ~~~s-----iks~lL~~~~~E~--~~~vr~k~~dviAeia~~~l~e~WPe-----ll~~L~q~~~S~~~~~rE~al~il~ 143 (1075)
T KOG2171|consen 76 VQQS-----IKSSLLEIIQSET--EPSVRHKLADVIAEIARNDLPEKWPE-----LLQFLFQSTKSPNPSLRESALLILS 143 (1075)
T ss_pred HHHH-----HHHHHHHHHHhcc--chHHHHHHHHHHHHHHHhccccchHH-----HHHHHHHHhcCCCcchhHHHHHHHH
Confidence 2333 4455666666544 4568888888888888764 223443 4678888889999999999999999
Q ss_pred HHHhhcCCCcchhhccchHHHHHHHhc---cCCCHhHHHHHHHHHHHHhhcCH---HHHHHHHhcCCHHHHHHhhcCCch
Q 000124 242 RLMLAFGDSIPTVIDSGAVKALVQLVG---QNNDISVRASAADALEALSSKSI---KAKKAVVAADGVPVLIGAIVAPSK 315 (2138)
Q Consensus 242 nLs~~~~e~r~~l~~~GaL~~LL~LL~---s~sd~~vr~~Aa~aL~nLs~~s~---e~Rk~i~e~ggL~~LI~LL~s~s~ 315 (2138)
.+....+.. ..+.++.+..++. .+.+..+|..+..++..++..++ ..++.+. .-+|.++..+.....
T Consensus 144 s~~~~~~~~-----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~ 216 (1075)
T KOG2171|consen 144 SLPETFGNT-----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQ 216 (1075)
T ss_pred hhhhhhccc-----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhh
Confidence 988433221 2234444555543 13344599999999998877542 3333333 345555555433110
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhcCchhHHH-Hh-------hhhcCCCCchhhH----HHHHHHHHHH-HHHhhcCCCCC
Q 000124 316 ECMQGQRGQALQGHATRALANIYGGMPALVV-YL-------GELSQSPRLAAPV----ADIIGALAYA-LMVFEQKSGVD 382 (2138)
Q Consensus 316 e~mq~~~~~alqe~Al~ALanIsGgis~LI~-~L-------~elL~~~~ss~~~----A~~L~aLa~~-l~~l~q~~~~~ 382 (2138)
. +..+....+..+|.-+.+..+.++. .+ .+.-.+.+....+ ..++..+... ..... .
T Consensus 217 ~-----~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k-----~ 286 (1075)
T KOG2171|consen 217 D-----GDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCK-----K 286 (1075)
T ss_pred c-----cchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhh-----h
Confidence 0 0111223355666655544444321 11 1112222221111 1111111110 00000 0
Q ss_pred CcccchhhHHHHHHHHcCCCChh---------------HHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHH
Q 000124 383 DEPFDARQIEDILVMLLKPHDNK---------------LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATAD 447 (2138)
Q Consensus 383 ~~~~~~~~Ie~~LV~LL~s~~~e---------------~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~e 447 (2138)
...+-+ .+.+.+...+....++ .....+.+++-.++.+-.-. ..-...++.+-.++.+.+..
T Consensus 287 ~~~~~~-~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~l~~~l~S~~w~ 363 (1075)
T KOG2171|consen 287 LALLGH-TLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEALEAMLQSTEWK 363 (1075)
T ss_pred chhhhc-cHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--hehHHHHHHHHHHhcCCCHH
Confidence 001111 1223333333221111 12233334443333221100 00012245566688999999
Q ss_pred HHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh
Q 000124 448 VREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527 (2138)
Q Consensus 448 vq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks 527 (2138)
.+..+..+|..++.+..+.-.... ...++..+..++++++.||..|+.+++.++.+-...-..-.....++.|+..+.+
T Consensus 364 ~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~ 442 (1075)
T KOG2171|consen 364 ERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS 442 (1075)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc
Confidence 999999999999877544432221 3456778888899999999999999999987433333444455677788888887
Q ss_pred C-CHHHHHHHHHHHHHHhcCChh--HHHHHHHcCCcc-hhhhccccCChhHHHHHHHHHHHHHHhhc-------hhhHHH
Q 000124 528 G-SQKAREVAAHVLWILCCHSED--IRACVESAGAVP-AFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQ 596 (2138)
Q Consensus 528 ~-d~~vre~Aa~aL~nLs~~sd~--~r~~I~e~GaI~-aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-------~~aI~~ 596 (2138)
. ++.++..|+.++.|+....+. +...+ .+.+. .|..+..++.+.+++.++.+++..+.... ...+|.
T Consensus 443 ~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~ 520 (1075)
T KOG2171|consen 443 TQNVRVQAHAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPL 520 (1075)
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 6 889999999999999764322 11110 22333 33456678899999999999999987754 245677
Q ss_pred HHHHhcCCC----cchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHh---hcCCCHHHHHHHHHHHHHHhhc--
Q 000124 597 LLALLLGDS----PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV---LNSSNEENQEYAASVLADLFSM-- 667 (2138)
Q Consensus 597 Li~LL~~~d----~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~L---Lks~s~evre~Aa~ALanL~s~-- 667 (2138)
|.+.|...+ ...+..+.+|++.+..-.....+.... ...+..+..+ -.+.+...+..-....+++|..
T Consensus 521 L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a---~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg 597 (1075)
T KOG2171|consen 521 LKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA---EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILG 597 (1075)
T ss_pred HHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH---HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhc
Confidence 777776544 234556677777665332222221110 1112222222 1111333344444444444431
Q ss_pred ---------------------------------------------------------------------------Chhhh
Q 000124 668 ---------------------------------------------------------------------------RQDIC 672 (2138)
Q Consensus 668 ---------------------------------------------------------------------------~~e~r 672 (2138)
-.+..
T Consensus 598 ~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F 677 (1075)
T KOG2171|consen 598 DDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAF 677 (1075)
T ss_pred hhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhh
Confidence 00000
Q ss_pred hhhhhCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCc----ccchhhhHHhcCChhhHHhhhhc-CCHHHHHHHHH
Q 000124 673 GSLATDEIVNPCMRLL-TSNTQMVATQSARALGALSRPTKT----KTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVA 746 (2138)
Q Consensus 673 ~~Ive~GaV~~Lv~LL-~dgs~~Vk~~AA~ALanLa~s~~~----~d~~r~~I~~~G~V~~Lv~LL~s-~s~~Vr~eAl~ 746 (2138)
..- -...++..+..+ -.-...+|+.|+.++..+.++... .+. ...-.-.++.+.++.-+.. .+.++....+.
T Consensus 678 ~pY-ve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~-~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~ 755 (1075)
T KOG2171|consen 678 APY-VEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPE-YLKQLWEAIRPALIKALEEEPETEVLSEILE 755 (1075)
T ss_pred hhH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Confidence 000 001111111222 234567888888888777641100 001 1112234466666666665 45666666666
Q ss_pred HHHHhhC-------CchHHHHHHh---cCcHHHHHH-------------------HHhCCCHHHHHHHHHHHHHhhhcCC
Q 000124 747 ALANLLS-------DPDIAAEVLL---EDVVSALTR-------------------VLAEGTSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 747 ALaNLa~-------~~e~r~~Ii~---~g~L~~LV~-------------------LL~~~~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
.+++... +++..+.+.. ........+ .+.+.+..+..++..++..+.....
T Consensus 756 ~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k 835 (1075)
T KOG2171|consen 756 SFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALK 835 (1075)
T ss_pred HHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHcc
Confidence 6666521 2222222111 111111111 1112233456677777777776431
Q ss_pred CchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHH
Q 000124 798 VGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPL 877 (2138)
Q Consensus 798 ~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~v 877 (2138)
..+. ..-.+..+.++.++...+. .. +.=|+..++.+.. .+....+ .....-++.+..++.+..|++
T Consensus 836 --~~f~--p~f~~~~p~iv~~l~~~~~-~~-r~~av~~~~d~ie---~~~~a~~-----~~~~~~~p~~~~~~~d~~pEV 901 (1075)
T KOG2171|consen 836 --GSFL--PFFENFLPLIVKLLKSKKT-VA-RQWAVCIFDDLIE---GCGEASA-----KYKERFLPLVLEALQDSDPEV 901 (1075)
T ss_pred --cccc--HHHHHHHHHHHHHHhcCCc-HH-HHHHHHHHHHHHH---hcccccc-----hHHHHHHHHHHHHcCCCCHHH
Confidence 1111 1115577788888864432 22 6666666665553 1111110 012345888999999999999
Q ss_pred HHHHHHHHHHhhccC
Q 000124 878 QDKAIEILSRLCGDQ 892 (2138)
Q Consensus 878 q~~AieiL~~L~~~~ 892 (2138)
|+.|.+.+.-++...
T Consensus 902 RqaAsYGiGvlaq~~ 916 (1075)
T KOG2171|consen 902 RQAAAYGMGVLAQFG 916 (1075)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999887644
No 92
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.32 E-value=3.1e-12 Score=136.58 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=78.0
Q ss_pred CceEEEEEecccccc--ccc-CCCCceEEEEecCC--CCccccccccCCCCCcccccee-eecCC-CCCCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNLK--QTM-GTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTW-AFDVP-PKGQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--~~~-~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~-~~~~~-p~~~~l~~~~~~~~ 2081 (2138)
.+.|+|+|++|.||. +.. |..||||++.+..+ .++||||+++++||+|||+|.| .++.- .....|+++||+++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 468999999999994 444 78899999998533 3447999999999999999999 34321 13457999999999
Q ss_pred CC-CCcccceEEEEecceeec--ceecce
Q 000124 2082 TF-GKSTLGKVTIQIDKVVTE--GVYSGL 2107 (2138)
Q Consensus 2082 ~~-~k~~~g~~~~~~~~v~~~--~~~~~~ 2107 (2138)
.| +.+.+|++.|.|.++-.. |+.+-+
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 123 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLLNEGELLVS 123 (128)
T ss_pred CCCCCceeEEEEEeccccCCCCCceEEEE
Confidence 88 467899999999998654 544433
No 93
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.32 E-value=9.4e-09 Score=133.46 Aligned_cols=437 Identities=15% Similarity=0.127 Sum_probs=301.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHH
Q 000124 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLK 120 (2138)
Q Consensus 41 V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~ 120 (2138)
+...++.|..+. .+-.++..+..-....+.... .--+.+...|.+.+.+....++.+|..+.........
T Consensus 5 ~~~~l~~l~~~~----~~~~~L~~l~~~~~~~~~l~~------~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l 74 (503)
T PF10508_consen 5 INELLEELSSKA----ERLEALPELKTELSSSPFLER------LPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSL 74 (503)
T ss_pred HHHHHHHHhccc----chHHHHHHHHHHHhhhhHHHh------chHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH
Confidence 556666665542 234444444443322221111 2234477888888888888999999777654433333
Q ss_pred HHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q 000124 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200 (2138)
Q Consensus 121 v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~n 200 (2138)
..+..+.+...|.++++.+|..+++.|.++..+ +....+.+.+.+.++.++..+.+++ ..+...|..+|.+
T Consensus 75 --~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~----~~~~~~~~~~~~l~~~i~~~L~~~d---~~Va~~A~~~L~~ 145 (503)
T PF10508_consen 75 --LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH----SEGAAQLLVDNELLPLIIQCLRDPD---LSVAKAAIKALKK 145 (503)
T ss_pred --HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC----CHHHHHHhcCccHHHHHHHHHcCCc---HHHHHHHHHHHHH
Confidence 346678888999999999999999999999863 3444677888999999999998754 4689999999999
Q ss_pred HhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHH
Q 000124 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2138)
Q Consensus 201 Lcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa 280 (2138)
++..+.+. ..+...+++..|..++...++.+|..+..++.+++..+++......+.|.++.++..+.. +|.-++..+.
T Consensus 146 l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnal 223 (503)
T PF10508_consen 146 LASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNAL 223 (503)
T ss_pred HhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHH
Confidence 99977655 567788889999999998888999999999999998888877888899999999999984 8889999999
Q ss_pred HHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhh
Q 000124 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2138)
Q Consensus 281 ~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~ 360 (2138)
..+..++. .+...+.+.+.|.++.|.+++.+...+. .
T Consensus 224 ell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp-~----------------------------------------- 260 (503)
T PF10508_consen 224 ELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDP-R----------------------------------------- 260 (503)
T ss_pred HHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCC-c-----------------------------------------
Confidence 99999999 5888899999999999999887644221 0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHh-hhchHHHHHH
Q 000124 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVS-HAEAKKVLIG 439 (2138)
Q Consensus 361 ~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~-e~~gI~~LV~ 439 (2138)
....+-. +...+ .++++.... ...+. -...+..+..
T Consensus 261 ---------------------~~~~~l~-g~~~f--------------------~g~la~~~~-~~v~~~~p~~~~~l~~ 297 (503)
T PF10508_consen 261 ---------------------LSSLLLP-GRMKF--------------------FGNLARVSP-QEVLELYPAFLERLFS 297 (503)
T ss_pred ---------------------ccchhhh-hHHHH--------------------HHHHHhcCh-HHHHHHHHHHHHHHHH
Confidence 0000000 00001 111111000 00000 0123445667
Q ss_pred HHccCCHHHHHHHHHHHHHhhhccchhhHHh-hhch-h----HHHHHHHhcCCchhhHHHHHHHHHHHhhcCch---h--
Q 000124 440 LITMATADVREYLILSLTKLCRREVGIWEAI-GKRE-G----IQLLISLLGLSSEQHQEYAVQLIAILTEQVDD---S-- 508 (2138)
Q Consensus 440 LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I-~e~g-g----Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e---~-- 508 (2138)
++.+.+...+..|..+|+.++... +-+..+ ...+ . +........++..++|..++.+|.++-....+ +
T Consensus 298 ~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i 376 (503)
T PF10508_consen 298 MLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDI 376 (503)
T ss_pred HhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 788899999999999999999774 444444 3332 3 33344455677788999999999999432221 1
Q ss_pred ---HHHHH---hcCCch-HHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh---hHHHHH
Q 000124 509 ---KWAIT---AAGGIP-PLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP---KGQDAS 578 (2138)
Q Consensus 509 ---r~~I~---~aGaIp-~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~---evq~~A 578 (2138)
....+ ..+... .+..+++.+-+++|..+...|..|+.+.-..+.+....|.+.-|+.--...+. +.++..
T Consensus 377 ~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~i 456 (503)
T PF10508_consen 377 LSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDI 456 (503)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHH
Confidence 11111 223333 56777888889999999999999998777777777777777666643333333 455556
Q ss_pred HHHHHHH
Q 000124 579 AMALTKL 585 (2138)
Q Consensus 579 a~AL~nL 585 (2138)
+.+|.+.
T Consensus 457 i~~l~~~ 463 (503)
T PF10508_consen 457 IKALAKS 463 (503)
T ss_pred HHHHHhc
Confidence 6555543
No 94
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.32 E-value=3.7e-12 Score=134.99 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=87.2
Q ss_pred eEEEEEecccccc--cccCCCCceEEEEecCCCCccccccc-cCCCCCccccceeeecCCC---CCCeEEEEEeecCCCC
Q 000124 2011 CLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVVS-HSISPEWKEGFTWAFDVPP---KGQKLHIICKSKNTFG 2084 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~p~w~~~f~~~~~~~p---~~~~l~~~~~~~~~~~ 2084 (2138)
.|.|+|++|+||. +..|..||||++.+++-.+++|++++ .+.||+|||+|.|.+.++. -.+.|.++||+++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999994 45689999999999443667799986 4899999999999998763 2799999999999865
Q ss_pred -CcccceEEEEecceeeccee-----cceeecCCC
Q 000124 2085 -KSTLGKVTIQIDKVVTEGVY-----SGLFNLNHD 2113 (2138)
Q Consensus 2085 -k~~~g~~~~~~~~v~~~~~~-----~~~~~l~~~ 2113 (2138)
.+.||++.|.+.++..+++- ...|.|.+.
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~ 115 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP 115 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC
Confidence 46899999999999998864 467999875
No 95
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.31 E-value=2.3e-12 Score=134.77 Aligned_cols=89 Identities=18% Similarity=0.358 Sum_probs=74.5
Q ss_pred CceEEEEEecccccccccCCCCceEEEEecCCC---CccccccccCCCCCccccceeeecCCCCCCe----EEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP---PRQTKVVSHSISPEWKEGFTWAFDVPPKGQK----LHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~----l~~~~~~~~ 2081 (2138)
-|-|+|+|++|.||. ..|..||||++.+.-++ ++||+|.++++||.|||+|.|-+ | ..+. |++.||+.|
T Consensus 13 ~~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v--~-~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 13 KAELHVNILEAENIS-VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPL--P-EEESLDGTLTLTLRCCD 88 (118)
T ss_pred CCEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeC--C-HHHhCCcEEEEEEEeCC
Confidence 588999999999998 44889999999995432 33599999999999999999954 4 5555 999999999
Q ss_pred CCC-CcccceEEEEecceeec
Q 000124 2082 TFG-KSTLGKVTIQIDKVVTE 2101 (2138)
Q Consensus 2082 ~~~-k~~~g~~~~~~~~v~~~ 2101 (2138)
.|| .+.+|+|.+.+.+|-..
T Consensus 89 rfs~~d~IG~v~l~l~~~~~~ 109 (118)
T cd08677 89 RFSRHSTLGELRLKLADVSMM 109 (118)
T ss_pred CCCCCceEEEEEEccccccCC
Confidence 995 46699999999987443
No 96
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.31 E-value=4.1e-12 Score=134.99 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=85.0
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEe--cCCCCccccccccCCCCCccccceee-ecCC-CCCCeEEEEEeecCCC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTI--GNGPPRQTKVVSHSISPEWKEGFTWA-FDVP-PKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~p~w~~~f~~~-~~~~-p~~~~l~~~~~~~~~~ 2083 (2138)
+-|+|+|++|.|| .+..|..||||++.+ .++.++||||+++ .||+|||+|.|. +... ..+..|++.||+++.|
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 6799999999999 455578899999776 3344557999988 999999999997 4322 2467899999999999
Q ss_pred C-CcccceEEEEecceeecceecceeecCC
Q 000124 2084 G-KSTLGKVTIQIDKVVTEGVYSGLFNLNH 2112 (2138)
Q Consensus 2084 ~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~ 2112 (2138)
+ .+.+|.+.|.|.++-.++....+|.|.|
T Consensus 95 ~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 95 RKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred ccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 6 6679999999999999999999999875
No 97
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.30 E-value=4.2e-12 Score=136.34 Aligned_cols=93 Identities=19% Similarity=0.344 Sum_probs=79.5
Q ss_pred ceEEEEEecccccc--cccCCCCceEEEEecC------CCCccccccccCCCCCccccceeeecCCC---CCCeEEEEEe
Q 000124 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGN------GPPRQTKVVSHSISPEWKEGFTWAFDVPP---KGQKLHIICK 2078 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~t~~~~~~~~p~w~~~f~~~~~~~p---~~~~l~~~~~ 2078 (2138)
+.|+|+|++|.||. +..|..||||++.+.. ...+||+|+++|+||+|||+|.|.+.... .+..|+|+||
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 67999999999994 4458999999999953 34567999999999999999999987642 4678999999
Q ss_pred ecCCCC-CcccceEEEEecceeecc
Q 000124 2079 SKNTFG-KSTLGKVTIQIDKVVTEG 2102 (2138)
Q Consensus 2079 ~~~~~~-k~~~g~~~~~~~~v~~~~ 2102 (2138)
+++.++ .+.+|++.|.|+++...+
T Consensus 96 d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 96 DYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred ecCCCCCCcEeEEEEEeHHHCCccc
Confidence 999987 789999999999987543
No 98
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.30 E-value=2.4e-12 Score=138.55 Aligned_cols=103 Identities=18% Similarity=0.339 Sum_probs=85.0
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCCC-CeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~~~~~~~ 2081 (2138)
.|.|.|+|++|.|| .+..|..||||++.+..+ .+++|+++++++||+|||+|.|.+..+-+. ..|.|+||+++
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 47899999999999 455588999999999532 234699999999999999999987543222 37999999999
Q ss_pred CCCC-cccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFGK-STLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.||+ +.+|+|.|.+.. ...+++.+|.+...
T Consensus 94 ~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~ 124 (136)
T cd08402 94 RIGKNDPIGKVVLGCNA--TGAELRHWSDMLAS 124 (136)
T ss_pred CCCCCceeEEEEECCcc--CChHHHHHHHHHhC
Confidence 9987 679999999975 46678888999888
No 99
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.29 E-value=5.6e-12 Score=131.53 Aligned_cols=80 Identities=30% Similarity=0.623 Sum_probs=66.1
Q ss_pred EEEEEecccccccccCCCCceEEEEecC-C---CCccccccccCCCCCccccceeeecCCCCCCeEEEEEeec-------
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGN-G---PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSK------- 2080 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~------- 2080 (2138)
|.|+|++|+||+ |..||||+|.+.. | +..|||++++|+||+|||+|+|.++. .+.|.+.||++
T Consensus 1 L~V~V~~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC---CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEcccccccc
Confidence 689999999996 5699999998843 2 23479999999999999999999863 67999999998
Q ss_pred CCCCC-cccceEEEEecc
Q 000124 2081 NTFGK-STLGKVTIQIDK 2097 (2138)
Q Consensus 2081 ~~~~k-~~~g~~~~~~~~ 2097 (2138)
+.+|+ +-+|+..|+|+.
T Consensus 75 d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccCcccEEEEEEEEECH
Confidence 45666 557888888754
No 100
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.29 E-value=4.9e-12 Score=134.36 Aligned_cols=101 Identities=16% Similarity=0.221 Sum_probs=81.9
Q ss_pred ceEEEEEecccccc--cccCCCCceEEEEecCCC-----CccccccccCCCCCccccceeeecCCC-CCCeEEEEEeecC
Q 000124 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGP-----PRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHIICKSKN 2081 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~~~~~~~ 2081 (2138)
|.|+|+|++|.||. +.-|..||||++.+-.++ +|||||+++++||.|||+|.|.+..-= .+-.|++.||+++
T Consensus 14 ~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~ 93 (124)
T cd08680 14 SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVG 93 (124)
T ss_pred CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCC
Confidence 58999999999993 344789999999975444 446999999999999999999763211 4578999999999
Q ss_pred CC-CCcccceEEEEecceeec-ceecceeec
Q 000124 2082 TF-GKSTLGKVTIQIDKVVTE-GVYSGLFNL 2110 (2138)
Q Consensus 2082 ~~-~k~~~g~~~~~~~~v~~~-~~~~~~~~l 2110 (2138)
.+ ..+.||.|.|.|+++-.. +.+..+|.|
T Consensus 94 ~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 94 PDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 88 467799999999999554 457777765
No 101
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.28 E-value=2.9e-12 Score=136.95 Aligned_cols=102 Identities=18% Similarity=0.309 Sum_probs=88.3
Q ss_pred ceEEEEEecccccc--cccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecCC
Q 000124 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKNT 2082 (2138)
Q Consensus 2010 g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~~ 2082 (2138)
|.|.|+|++|.||. +..|..||||++.+..+. .++|++++++.||.|||+|.|.+..+.+ ++.|.|+||+++.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 93 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS 93 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC
Confidence 78999999999994 446899999999995542 3479999999999999999999865532 6899999999998
Q ss_pred C-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2083 F-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2083 ~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+ +.+.+|++.|.++. .......+|.|.++
T Consensus 94 ~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 94 VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 6 55789999999999 67778999999998
No 102
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.28 E-value=7.9e-12 Score=132.76 Aligned_cols=89 Identities=16% Similarity=0.360 Sum_probs=78.0
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCC-ccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CCc
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP-RQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GKS 2086 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k~ 2086 (2138)
+|.|+|++|+|| .+..|..||||++.+++... +||++++++.||+|||+|.|.+..| .++.|.|+||+++.+ ..+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCCCCCCc
Confidence 589999999999 46778999999999955444 3699999999999999999998765 789999999999998 468
Q ss_pred ccceEEEEecceee
Q 000124 2087 TLGKVTIQIDKVVT 2100 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~ 2100 (2138)
.+|++.|+|+++.-
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999998864
No 103
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.26 E-value=5.3e-12 Score=136.03 Aligned_cols=104 Identities=16% Similarity=0.257 Sum_probs=81.4
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCCCC-eEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPKGQ-KLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~-~l~~~~~~~~ 2081 (2138)
-|.|.|+|++|.|| .+..|..||||++++..|. +|||+|++++.||+|||+|.|.+......+ .|.|+||+++
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 38899999999999 4556899999999984443 457999999999999999999985444444 6999999998
Q ss_pred CC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2082 TF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.+ +.+.+|+|.|....+= ..+...+|.+.+.
T Consensus 93 ~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~ 124 (135)
T cd08410 93 VKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS 124 (135)
T ss_pred CCCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence 87 6788999986542221 2235667777776
No 104
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.25 E-value=6.2e-12 Score=135.07 Aligned_cols=102 Identities=16% Similarity=0.267 Sum_probs=82.1
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCCC-CeEEEEEeecCC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHIICKSKNT 2082 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~~~~~~~~ 2082 (2138)
|.|.|+|++|.|| .+..|..||||++.+..+ .++||+|+++++||.|||+|.|.+...... ..|.++||+++.
T Consensus 14 ~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~ 93 (134)
T cd08403 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR 93 (134)
T ss_pred CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 7899999999999 445589999999999532 345799999999999999999987543333 469999999999
Q ss_pred CC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2083 FG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2083 ~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+| .+.+|+|.|.+. . ....+..+|.++..
T Consensus 94 ~~~~~~IG~~~l~~~-~-~~~~~~~w~~~~~~ 123 (134)
T cd08403 94 VGHNELIGVCRVGPN-A-DGQGREHWNEMLAN 123 (134)
T ss_pred CCCCceeEEEEECCC-C-CCchHHHHHHHHHC
Confidence 97 577999999987 2 23345677888777
No 105
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.24 E-value=1.3e-11 Score=130.01 Aligned_cols=99 Identities=17% Similarity=0.270 Sum_probs=84.1
Q ss_pred EEEeccccc--ccccCCCCceEEEEecCCC------CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCC---
Q 000124 2014 VTIKRGNNL--KQTMGTTNAFCRLTIGNGP------PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNT--- 2082 (2138)
Q Consensus 2014 v~v~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~--- 2082 (2138)
.-.++|+|| .+..|..||||++.+..++ .+||+|+++|+||+|||+|.|.+..+ ..+.|.++||++++
T Consensus 4 ~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~ 82 (120)
T cd04048 4 ELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSK 82 (120)
T ss_pred EEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcC
Confidence 345788999 5666899999999995544 36799999999999999999987644 67899999999997
Q ss_pred -C-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2083 -F-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2083 -~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+ +.+.+|+|.+++.++.........|+|.+.
T Consensus 83 ~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~ 115 (120)
T cd04048 83 DLSDHDFLGEAECTLGEIVSSPGQKLTLPLKGG 115 (120)
T ss_pred CCCCCcEEEEEEEEHHHHhcCCCcEEEEEccCC
Confidence 5 567899999999999988888889999665
No 106
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.24 E-value=3e-08 Score=128.86 Aligned_cols=389 Identities=18% Similarity=0.171 Sum_probs=277.9
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhc
Q 000124 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKR 473 (2138)
Q Consensus 394 ~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ 473 (2138)
.+...+...+.+.+ ..++..|..+......... ..+..+.+...+.+.++.++.-++..+.++..++......+.+.
T Consensus 42 ~lf~~L~~~~~e~v-~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQV-ELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHH-HHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 35555665555534 4555666666544332222 34556788889999999999999999999998876667777888
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
+.++.++.++.+++..+...|+.+|.+++.+ +.....+...+.+..|..++...++.+|..+.+++.+++..+++....
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999999999999984 555566778888999999998889999999999999999999999999
Q ss_pred HHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh-------chhhHHHHHHHhcCCCcch---H---HHHHHHHHHHH
Q 000124 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-------DSATINQLLALLLGDSPSS---K---AHVIKVLGHVL 620 (2138)
Q Consensus 554 I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~-------e~~aI~~Li~LL~~~d~~V---~---~~A~~AL~~La 620 (2138)
+.+.|.++.++..++++|.-+|.++...|..|+..+ +.++++.|..++.+.+.+- . .......++++
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 999999999999999999999999999999998753 3678899999997543332 1 11123444444
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhh-hhC-CCH----HHHHHHhccCCHH
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL-ATD-EIV----NPCMRLLTSNTQM 694 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~I-ve~-GaV----~~Lv~LL~dgs~~ 694 (2138)
.. .+..+... -+..+..|..++.+.+...+..|..+++.+++ +.+....+ ... +.+ ..+-...+.++.+
T Consensus 278 ~~--~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 278 RV--SPQEVLEL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred hc--ChHHHHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 33 22222211 13356677778888899999999999999998 66776666 443 343 3444455678889
Q ss_pred HHHHHHHHHHHhcCCCCcccchhh-----h---HHhcCChh-hHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHh-c
Q 000124 695 VATQSARALGALSRPTKTKTTNKM-----S---YIAEGDVK-PLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLL-E 764 (2138)
Q Consensus 695 Vk~~AA~ALanLa~s~~~~d~~r~-----~---I~~~G~V~-~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~-~ 764 (2138)
+|..+..|++++.......+..+. . ....+-.. .++.+++.+=+++|..+...|..|+.++-....+.. +
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~ 432 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSP 432 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCc
Confidence 999999999999652221001111 1 11223333 567777777799999999999999998876666654 4
Q ss_pred CcHHHHHHHHhCCCHHH---HHHHHHHHHH
Q 000124 765 DVVSALTRVLAEGTSEG---KKNASRALHQ 791 (2138)
Q Consensus 765 g~L~~LV~LL~~~~~~V---r~~Aa~AL~n 791 (2138)
|.+..++.=-.+.+.+. |...+.+|.+
T Consensus 433 gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 433 GFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred cHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 44444433222233333 4444444443
No 107
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.24 E-value=7.9e-12 Score=134.88 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=81.8
Q ss_pred hhcCC--ceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCC-CCCeEEE
Q 000124 2005 LHCLP--GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPP-KGQKLHI 2075 (2138)
Q Consensus 2005 ~~~~~--g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p-~~~~l~~ 2075 (2138)
|+..| +.|+|+|++|.|| .+..|..||||++.+-.++ +|||+|+++++||+|||+|.|.+...= ....|.|
T Consensus 8 L~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~ 87 (136)
T cd08406 8 LSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRV 87 (136)
T ss_pred EEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEE
Confidence 34443 6799999999999 4445889999999994332 447999999999999999999875332 3456999
Q ss_pred EEeecCCC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2076 ICKSKNTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2076 ~~~~~~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+||+++.| +.+.+|+|.|-... ....+..++.+..+
T Consensus 88 ~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~ 124 (136)
T cd08406 88 TVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLAS 124 (136)
T ss_pred EEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence 99999877 66889999996543 33445666667766
No 108
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.24 E-value=1.4e-11 Score=130.39 Aligned_cols=95 Identities=24% Similarity=0.437 Sum_probs=78.3
Q ss_pred CceEEEEEecccccc--cccCCCCceEEEEecCCC----CccccccccCCCCCccccceee-ecCC-CCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWA-FDVP-PKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~-~~~~-p~~~~l~~~~~~~ 2080 (2138)
+|.|.|+|++|.||. +..|..||||++.+..+. .++|+++++++||.|||.|.|. +... ..++.+.|+||++
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 478999999999993 445789999999984333 3469999999999999999995 3211 1357999999999
Q ss_pred CCCCCcccceEEEEecceeecce
Q 000124 2081 NTFGKSTLGKVTIQIDKVVTEGV 2103 (2138)
Q Consensus 2081 ~~~~k~~~g~~~~~~~~v~~~~~ 2103 (2138)
++|+.+.+|++.+.|+++...+.
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 94 DRFGNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred CCcCCeeEEEEEEEcccCCCCcc
Confidence 99999999999999999886543
No 109
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.24 E-value=1e-07 Score=124.40 Aligned_cols=504 Identities=20% Similarity=0.199 Sum_probs=325.3
Q ss_pred HHHHHHhcC--CHHHHHHHHH-HHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhH
Q 000124 88 LFISILRSG--TPLAKVNVAA-TLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2138)
Q Consensus 88 ~LV~LLks~--~~evr~~Aa~-~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gr 164 (2138)
.+.+.+.+. +..-+..++. ++.....+.+.. .+.+.+++++.+++.+.++-+--++..+... ++. .
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~----~~~-~ 76 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHE----DPE-L 76 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT----SHH-H
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc----chh-H
Confidence 344555554 5544444443 444444433322 6788999999989999999988888888852 332 1
Q ss_pred HHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000124 165 KIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 165 e~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs 244 (2138)
-.+ ++..+.+-+.+++ +.++..|+++|.+++. ..+.+. .++.+..++.++++.+|..|+.++.++.
T Consensus 77 ~~l----~~n~l~kdl~~~n---~~~~~lAL~~l~~i~~------~~~~~~-l~~~v~~ll~~~~~~VRk~A~~~l~~i~ 142 (526)
T PF01602_consen 77 LIL----IINSLQKDLNSPN---PYIRGLALRTLSNIRT------PEMAEP-LIPDVIKLLSDPSPYVRKKAALALLKIY 142 (526)
T ss_dssp HHH----HHHHHHHHHCSSS---HHHHHHHHHHHHHH-S------HHHHHH-HHHHHHHHHHSSSHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHhhcCCC---HHHHHHHHhhhhhhcc------cchhhH-HHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 111 5677777777654 6789999999999985 233322 4778888999999999999999999999
Q ss_pred hhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhh
Q 000124 245 LAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQ 324 (2138)
Q Consensus 245 ~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~ 324 (2138)
..+++.. ... .++.+..++. +.+..++..|..++..+ ..+++....+ ++.++
T Consensus 143 ~~~p~~~---~~~-~~~~l~~lL~-d~~~~V~~~a~~~l~~i-~~~~~~~~~~-----~~~~~----------------- 194 (526)
T PF01602_consen 143 RKDPDLV---EDE-LIPKLKQLLS-DKDPSVVSAALSLLSEI-KCNDDSYKSL-----IPKLI----------------- 194 (526)
T ss_dssp HHCHCCH---HGG-HHHHHHHHTT-HSSHHHHHHHHHHHHHH-HCTHHHHTTH-----HHHHH-----------------
T ss_pred ccCHHHH---HHH-HHHHHhhhcc-CCcchhHHHHHHHHHHH-ccCcchhhhh-----HHHHH-----------------
Confidence 7655432 222 6888888886 57788888888888777 2212211000 01111
Q ss_pred hhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCCh
Q 000124 325 ALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDN 404 (2138)
Q Consensus 325 alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~ 404 (2138)
+.|..++...++
T Consensus 195 --------------------------------------------------------------------~~L~~~l~~~~~ 206 (526)
T PF01602_consen 195 --------------------------------------------------------------------RILCQLLSDPDP 206 (526)
T ss_dssp --------------------------------------------------------------------HHHHHHHTCCSH
T ss_pred --------------------------------------------------------------------HHhhhcccccch
Confidence 111111122222
Q ss_pred hHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc
Q 000124 405 KLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484 (2138)
Q Consensus 405 e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~ 484 (2138)
+ .+..+++.+..++....... .....++.+..++.+.++.+...++.++..+..... .-...++.|.+++.
T Consensus 207 ~-~q~~il~~l~~~~~~~~~~~--~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~ 277 (526)
T PF01602_consen 207 W-LQIKILRLLRRYAPMEPEDA--DKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLS 277 (526)
T ss_dssp H-HHHHHHHHHTTSTSSSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHhcccCChhhh--hHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhh
Confidence 2 33333333333322211000 003456677777778888888899988887776532 23466889999999
Q ss_pred CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchh
Q 000124 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2138)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aL 563 (2138)
+.++.+|..++..|..++... ...+. .....+..+. +.+..+|..+...|..++. ....+. .++.|
T Consensus 278 s~~~nvr~~~L~~L~~l~~~~---~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-~~n~~~------Il~eL 344 (526)
T PF01602_consen 278 SSDPNVRYIALDSLSQLAQSN---PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLAN-ESNVKE------ILDEL 344 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCCHC---HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH---HHHHHH------HHHHH
T ss_pred cccchhehhHHHHHHHhhccc---chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccc-ccchhh------HHHHH
Confidence 999999999999999998743 22222 2333344555 7799999999999999985 222222 45667
Q ss_pred hhcc-ccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchh
Q 000124 564 LWLL-KSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2138)
Q Consensus 564 v~LL-kS~~~evq~~Aa~AL~nLs~~~e---~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI 639 (2138)
...+ ...+++.+..++..++.++..-. ...++.+++++....+.+...+...+..+....+. . ....+
T Consensus 345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~--~------~~~~l 416 (526)
T PF01602_consen 345 LKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE--L------REKIL 416 (526)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT--T------HHHHH
T ss_pred HHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh--h------hHHHH
Confidence 7777 44588899999999999986532 45788999999988888877777777776543221 1 11247
Q ss_pred hHHHHhhcC-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhh
Q 000124 640 RSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2138)
Q Consensus 640 ~aLV~LLks-~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~ 718 (2138)
..|+.++.+ .+++.+..++|.++..+...++ .. .-...+..+.......++.+|.....++..+....+.. ..+
T Consensus 417 ~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~-~~~- 491 (526)
T PF01602_consen 417 KKLIELLEDISSPEALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN-EVQ- 491 (526)
T ss_dssp HHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST-THH-
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch-hhH-
Confidence 888888876 5788999999999998764322 00 11234455566666778889999999999998633320 111
Q ss_pred hHHhcCChhhHHhhhh--cCCHHHHHHHHHHHHHh
Q 000124 719 SYIAEGDVKPLIKLAK--TSSIDAAETAVAALANL 751 (2138)
Q Consensus 719 ~I~~~G~V~~Lv~LL~--s~s~~Vr~eAl~ALaNL 751 (2138)
..+...+..+.. +.+.+||..|...+.-|
T Consensus 492 ----~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 492 ----NEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp ----HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 135666777777 78999999999887755
No 110
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.24 E-value=6.7e-12 Score=135.61 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=83.7
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCC----CCccccccccCCCCCccccceeeecCCCCC-CeEEEEEeecCC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNG----PPRQTKVVSHSISPEWKEGFTWAFDVPPKG-QKLHIICKSKNT 2082 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~-~~l~~~~~~~~~ 2082 (2138)
+-|+|+|++|.|| .+ .|..||||++.|.-+ .+|||||+++++||.|||+|.|.+...++. ..|+|+||+++.
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~ 93 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG 93 (137)
T ss_pred CeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence 6799999999999 45 588999999999544 355799999999999999999999766666 589999999987
Q ss_pred C-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2083 F-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2083 ~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+ +.+.+|+|.|.....-..-++..++.+...
T Consensus 94 ~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 94 VRKSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred CCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 7 556899999886544444456667777666
No 111
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.24 E-value=9.3e-12 Score=134.11 Aligned_cols=103 Identities=12% Similarity=0.256 Sum_probs=84.2
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceeeecCCCC-CCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~~~ 2081 (2138)
.+.|+|+|++|.|| .+..|..||||++.+..+. ++||+|+++++||+|||+|.|.+...-. +..|.|+||+++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 47899999999999 4556899999999995443 3479999999999999999998754322 456889999999
Q ss_pred CCC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2082 TFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
.++ .+.+|+|.|.+.. ....+..+|.|.+.
T Consensus 94 ~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 94 RVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred CCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 984 6799999999998 34457778888765
No 112
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.23 E-value=2.6e-08 Score=130.01 Aligned_cols=360 Identities=20% Similarity=0.220 Sum_probs=246.3
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhh
Q 000124 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2138)
Q Consensus 392 e~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~ 471 (2138)
.+.+..++.+.+.. ++..++.++..+..++.... -.-...+..|..++...++-.|..+...|..++..++.....
T Consensus 154 ~~~l~~lL~d~~~~-V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~-- 229 (526)
T PF01602_consen 154 IPKLKQLLSDKDPS-VVSAALSLLSEIKCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK-- 229 (526)
T ss_dssp HHHHHHHTTHSSHH-HHHHHHHHHHHHHCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--
T ss_pred HHHHhhhccCCcch-hHHHHHHHHHHHccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--
Confidence 35566666555543 66667776766612221111 011123445555667888999999999999988765444311
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r 551 (2138)
...++.+..++.+.++.+...++.++..+... .. ....+++.|..+|.+.++++|..+...|..++... .
T Consensus 230 -~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~ 299 (526)
T PF01602_consen 230 -NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---P 299 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---H
T ss_pred -HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---c
Confidence 45678888899989999999999999988763 22 23457899999999999999999999999998744 1
Q ss_pred HHHHHcCCcchhhhcc-ccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhcchHH
Q 000124 552 ACVESAGAVPAFLWLL-KSGGPKGQDASAMALTKLIRAAD-SATINQLLALL-LGDSPSSKAHVIKVLGHVLTMALQEDL 628 (2138)
Q Consensus 552 ~~I~e~GaI~aLv~LL-kS~~~evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL-~~~d~~V~~~A~~AL~~La~~~~~~d~ 628 (2138)
..+. .....+..+ .+.++.++..+...|.++++..+ ..+++.|.+.+ ...+++++..+..+++.++..-...
T Consensus 300 ~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~-- 374 (526)
T PF01602_consen 300 PAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD-- 374 (526)
T ss_dssp HHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--
T ss_pred hhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--
Confidence 2221 122223334 48889999999999999987654 45778899999 4557789999999999886542211
Q ss_pred HHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhc
Q 000124 629 VQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALS 707 (2138)
Q Consensus 629 v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALanLa 707 (2138)
..-.++.++.+++.+++.+...+...+.++...+++.+.. ++..|++.+.+ .++.++..++|.++..+
T Consensus 375 ------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~ 443 (526)
T PF01602_consen 375 ------AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREK-----ILKKLIELLEDISSPEALAAAIWILGEYG 443 (526)
T ss_dssp ------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHH-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHH-----HHHHHHHHHHHhhHHHHHHHHHhhhcccC
Confidence 1125889999999887888888888899988766655443 37788888876 67789999999999987
Q ss_pred CCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-Cc--hHHHHHHhcCcHHHHHHHHh--CCCHHHH
Q 000124 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DP--DIAAEVLLEDVVSALTRVLA--EGTSEGK 782 (2138)
Q Consensus 708 ~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~--e~r~~Ii~~g~L~~LV~LL~--~~~~~Vr 782 (2138)
...+ . .. .....++.+.+.....+..++...+.++.-+.. +| +.+. ..++.+..+.. +.++++|
T Consensus 444 ~~~~---~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~-----~i~~~~~~~~~~~s~~~evr 512 (526)
T PF01602_consen 444 ELIE---N--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQN-----EILQFLLSLATEDSSDPEVR 512 (526)
T ss_dssp HHHT---T--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHH-----HHHHHHHCHHHHS-SSHHHH
T ss_pred Cccc---c--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHH-----HHHHHHHHHhccCCCCHHHH
Confidence 5111 1 00 112245556666666778899999999998864 33 2222 34455666777 7799999
Q ss_pred HHHHHHHHHh
Q 000124 783 KNASRALHQL 792 (2138)
Q Consensus 783 ~~Aa~AL~nL 792 (2138)
+.|.+.+.=|
T Consensus 513 ~Ra~~y~~ll 522 (526)
T PF01602_consen 513 DRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877533
No 113
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.22 E-value=3.6e-11 Score=129.57 Aligned_cols=101 Identities=18% Similarity=0.280 Sum_probs=79.3
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCC--------CCCeEEEEEeecC
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPP--------KGQKLHIICKSKN 2081 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p--------~~~~l~~~~~~~~ 2081 (2138)
|.|+|++|.|| .+..|..||||++.+ .+.++||++++++.||.|||+|.|.+-..| ....|.|+||+++
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~-~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSF-LNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEE-CCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 78999999999 677799999999999 577888999999999999999999743321 1257999999999
Q ss_pred CCCC-cccceEEEEec-ceeec---ceecceeecCCC
Q 000124 2082 TFGK-STLGKVTIQID-KVVTE---GVYSGLFNLNHD 2113 (2138)
Q Consensus 2082 ~~~k-~~~g~~~~~~~-~v~~~---~~~~~~~~l~~~ 2113 (2138)
++|+ +.+|++.|... .+-.+ .....+|.|...
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~ 118 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG 118 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC
Confidence 9976 69999997432 22211 345577777644
No 114
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.19 E-value=1.9e-08 Score=126.83 Aligned_cols=490 Identities=15% Similarity=0.069 Sum_probs=294.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHh-ccCchhHHHHHhcCChHH
Q 000124 53 SSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVL-CKDEDLRLKVLLGGCIPP 129 (2138)
Q Consensus 53 ~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~L-s~~e~~r~~v~~~G~Ip~ 129 (2138)
.+++....+..-..++....+..+.-+.+ .|+++.|..++... .++.+...+.++..+ +.+.+....+...+-++.
T Consensus 21 ~dpe~lvrai~~~kN~vig~~~~K~~~ik-~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~ 99 (678)
T KOG1293|consen 21 LDPEQLVRAIYMSKNLVIGFTDNKETNIK-LGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLK 99 (678)
T ss_pred CCHHHHHHHHHHhcchhhcCCCccchhhh-hcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHH
Confidence 45666677777788887776666665555 79999999999875 456666677777544 577788889999999999
Q ss_pred HHHhhccCC-HHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCch
Q 000124 130 LLSLLKSES-TDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGY 208 (2138)
Q Consensus 130 Lv~LL~sed-~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r 208 (2138)
++++|.+.| ..+++..++.+.++..... ...-.........++.+..++.-.. +.....-.....++|+.. .+
T Consensus 100 Ll~LLs~sD~~~~le~~l~~lR~Ifet~~--~q~~~~s~~~~sIi~~~s~l~s~~l---k~~~~l~~~~~a~~s~~~-~h 173 (678)
T KOG1293|consen 100 LLQLLSESDSLNVLEKTLRCLRTIFETSK--YQDKKMSLHLKSIIVKFSLLYSIEL---KYISRLDVSRAAHLSSTK-DH 173 (678)
T ss_pred HHHHhcCcchHhHHHHHHHHHHHHHhccc--ccccchhhhHHHHHHHHHHHHhhhh---hhhhhhhhhhhccccccc-hh
Confidence 999999977 8899999999999986421 1111122223335555555444122 122333344445555555 55
Q ss_pred hHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHH---HHHhhcCCCcchh----hccchHHH-HHHHhccCCCHhHHHHHH
Q 000124 209 WRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA---RLMLAFGDSIPTV----IDSGAVKA-LVQLVGQNNDISVRASAA 280 (2138)
Q Consensus 209 ~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~---nLs~~~~e~r~~l----~~~GaL~~-LL~LL~s~sd~~vr~~Aa 280 (2138)
+..+.++|..+.+.-++...+-..|..+...+. ++...++.....+ .+.|+.+. .+..+..+.+...+..+.
T Consensus 174 q~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl 253 (678)
T KOG1293|consen 174 QLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSL 253 (678)
T ss_pred hheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHH
Confidence 567777888888887777777889999988888 5554444433332 34555553 344444355666777777
Q ss_pred HHHHHHhhcC--HHHHHH--HHhcCCHHHHHH-----hhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhh
Q 000124 281 DALEALSSKS--IKAKKA--VVAADGVPVLIG-----AIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGEL 351 (2138)
Q Consensus 281 ~aL~nLs~~s--~e~Rk~--i~e~ggL~~LI~-----LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~el 351 (2138)
.++.++...+ .+++-. +..+.|-..+.. ++.+|-.. .-+++-...+-++.+ .+.
T Consensus 254 ~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s------~l~~~~~l~c~~a~~-----------~sk 316 (678)
T KOG1293|consen 254 ECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLS------TLDHTNVLFCILARF-----------ASK 316 (678)
T ss_pred HHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCcee------ehhhhhhhHHHHHHH-----------HHh
Confidence 7777776543 122111 111111111111 11111100 000000011111110 011
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcC--chhHHHHh
Q 000124 352 SQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN--IFLSQWVS 429 (2138)
Q Consensus 352 L~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n--~~~~~~L~ 429 (2138)
++.+.-.......+..+-....-+. .+.++.+.-++... ..+...+.+ .++++.+.
T Consensus 317 lq~~~~e~~~~~~~~ellf~~~sl~------------a~~~~~~~i~l~e~----------~i~~~~~~~~~i~~~k~~l 374 (678)
T KOG1293|consen 317 LQLPQHEEATLKTTTELLFICASLA------------ASDEKYRLILLNET----------LILNHLEYGLEISLKKEIL 374 (678)
T ss_pred hhhHHhhhhhhhhHHHHHHHHHHHh------------hcchhhhHHHhhhh----------hhhhhhhhhcchhHHHHHH
Confidence 1110000000000000000000000 00001110000000 000111111 24445555
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhH
Q 000124 430 HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSK 509 (2138)
Q Consensus 430 e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r 509 (2138)
+......+..+....+.++...++.++.+++..-...+..+....++.+|++++..++..++..++++|+|+...=...+
T Consensus 375 ~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~k 454 (678)
T KOG1293|consen 375 ETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK 454 (678)
T ss_pred HHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH
Confidence 55445555555566778888888888888887655555556677899999999999999999999999999998656788
Q ss_pred HHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHH-cCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVES-AGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 510 ~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e-~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
..+.+.|+|..+...+.+.++.+|..+.|+|+++..+.++.+...-. .=.-..+..+..++++.+|+++-..|.|+.+.
T Consensus 455 skfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 455 SKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999876654433222 22334556788899999999999999999876
No 115
>PLN03008 Phospholipase D delta
Probab=99.17 E-value=6.1e-11 Score=154.21 Aligned_cols=104 Identities=19% Similarity=0.366 Sum_probs=89.7
Q ss_pred CCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCcccceEEEEecceeecceecc
Q 000124 2027 GTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSG 2106 (2138)
Q Consensus 2027 ~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~~~~~~~ 2106 (2138)
+..||||+|.+++....||||++++.||+|||+|+|.+.+| ...|++.|||++.||.+.+|++.|.+.++.....+.+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~ 152 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISG 152 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEE
Confidence 57799999999442223799999999999999999999986 3589999999999999999999999999999889999
Q ss_pred eeecCCCCCCCCCc-cceEEEEEecCC
Q 000124 2107 LFNLNHDNNKDSSS-RTLEIEIIWSNR 2132 (2138)
Q Consensus 2107 ~~~l~~~~~~~~~~-~~~~~~~~w~~~ 2132 (2138)
+|.|.+++.|+=+. .++.+++|..+-
T Consensus 153 Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 153 WFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred EEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 99999997665544 366688888764
No 116
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.16 E-value=1.5e-10 Score=122.79 Aligned_cols=114 Identities=22% Similarity=0.348 Sum_probs=90.1
Q ss_pred eEEEEEeccccccc----ccCCCCceEEEEecC-----CCCccccccccCC-CCCccccceeeecCCCCCCeEEEEEeec
Q 000124 2011 CLTVTIKRGNNLKQ----TMGTTNAFCRLTIGN-----GPPRQTKVVSHSI-SPEWKEGFTWAFDVPPKGQKLHIICKSK 2080 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~t~~~~~~~-~p~w~~~f~~~~~~~p~~~~l~~~~~~~ 2080 (2138)
.|+|+|++|+||.. ..|..||||++.+.. +.+++|++++++. ||+|||+|.|.+..| ..+.|.++||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence 58999999999953 358899999999942 2334799999886 999999999999955 567899999999
Q ss_pred CCCCCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEE
Q 000124 2081 NTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2081 ~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
+.++.+.+|++.+.|+++ .+|. ..|+|.+..++.-.-+.+.+++.
T Consensus 82 ~~~~~~~iG~~~~~l~~l-~~g~--~~~~l~~~~~~~~~~~~l~v~~~ 126 (128)
T cd00275 82 DSGDDDFLGQACLPLDSL-RQGY--RHVPLLDSKGEPLELSTLFVHID 126 (128)
T ss_pred CCCCCcEeEEEEEEhHHh-cCce--EEEEecCCCCCCCcceeEEEEEE
Confidence 988899999999999987 4453 57999887343223355666553
No 117
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.15 E-value=5.3e-11 Score=123.35 Aligned_cols=86 Identities=20% Similarity=0.373 Sum_probs=71.1
Q ss_pred EEEEeccccc--ccccCCCCceEEEEecCCC-----CccccccccCCCCCccccceeeecCCC---CCCeEEEEEeecCC
Q 000124 2013 TVTIKRGNNL--KQTMGTTNAFCRLTIGNGP-----PRQTKVVSHSISPEWKEGFTWAFDVPP---KGQKLHIICKSKNT 2082 (2138)
Q Consensus 2013 ~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~t~~~~~~~~p~w~~~f~~~~~~~p---~~~~l~~~~~~~~~ 2082 (2138)
.+..++|.|| .+..|+.||||++.+.... .++|+|+++++||+|| +|.|..++.. .+++|.|+||+++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 3456689999 5667899999999984332 2479999999999999 7998866432 36899999999999
Q ss_pred CCC-cccceEEEEeccee
Q 000124 2083 FGK-STLGKVTIQIDKVV 2099 (2138)
Q Consensus 2083 ~~k-~~~g~~~~~~~~v~ 2099 (2138)
+|| +.+|++.++++++.
T Consensus 82 ~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 SGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCCcEEEEEEEEHHHHh
Confidence 976 78999999999998
No 118
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.14 E-value=4.5e-08 Score=123.45 Aligned_cols=497 Identities=15% Similarity=0.048 Sum_probs=297.7
Q ss_pred hcCCHHHHHHHHHHHHHhc-cCchhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHc
Q 000124 94 RSGTPLAKVNVAATLSVLC-KDEDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE 170 (2138)
Q Consensus 94 ks~~~evr~~Aa~~L~~Ls-~~e~~r~~v~~~G~Ip~Lv~LL~se--d~eVr~aAa~AL~nLS~~~~nkd~~gre~Ivea 170 (2138)
-..+++....+.....++. .+++.+..+...|+++.++.++..+ +++.....+..+..+..+ ++.....+.+.
T Consensus 19 ~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~----eqd~v~svL~~ 94 (678)
T KOG1293|consen 19 LHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLG----EQDKVDSVLRI 94 (678)
T ss_pred hcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhh----ccchHHHHHHH
Confidence 3456666677777777764 5677888889999999999999774 677777777788888763 55667889999
Q ss_pred CcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCc--hhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC
Q 000124 171 GVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDG--YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFG 248 (2138)
Q Consensus 171 G~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~--r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~ 248 (2138)
+.++.|++++.+++ ...+.+..+++++++-..... ......+..-+..+..++.-+.......-+....+++ ..+
T Consensus 95 ~~ll~Ll~LLs~sD--~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s-~~~ 171 (678)
T KOG1293|consen 95 IELLKLLQLLSESD--SLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS-STK 171 (678)
T ss_pred hhHHHHHHHhcCcc--hHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc-ccc
Confidence 99999999998765 235788999999999877532 2222222233455544444233444444444444444 334
Q ss_pred CCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHH---HHhhcCHHHHHHHHh---cCCHH---HHHHhhcCCchhhhh
Q 000124 249 DSIPTVIDSGAVKALVQLVGQNNDISVRASAADALE---ALSSKSIKAKKAVVA---ADGVP---VLIGAIVAPSKECMQ 319 (2138)
Q Consensus 249 e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~---nLs~~s~e~Rk~i~e---~ggL~---~LI~LL~s~s~e~mq 319 (2138)
+.+....+.|+.+.+.-++. ......|..+...+. .+..+++.....++. .+|+. .+..+..++...
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~-~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s--- 247 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLM-YLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFS--- 247 (678)
T ss_pred hhhheeccccchhhHHHHHH-hhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCcc---
Confidence 55555667788777766665 334578888888888 676755544443322 33333 344444444422
Q ss_pred hhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHH--H
Q 000124 320 GQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILV--M 397 (2138)
Q Consensus 320 ~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV--~ 397 (2138)
.+..+..||-+++.+-.. .++-.-...+.+-+- ..++ .
T Consensus 248 ------~~l~sl~cl~~~~~~s~~---------------------------------~d~l~~~~~~~dmgd-~~i~q~~ 287 (678)
T KOG1293|consen 248 ------ERLRSLECLVPYLRKSFN---------------------------------YDPLPWWFIFFDMGD-SLIVQYN 287 (678)
T ss_pred ------HHHHHHHHHHHHHhcccc---------------------------------ccccccceeeccCch-HHHHHHh
Confidence 233444454444321100 011111111211110 0000 0
Q ss_pred HcCC-CChhHHHHHHHHHHHHh-hc-CchhHHHHhhhchHHHHHHHHc------cCCHHHHHHHHH---HHHHhhhcc-c
Q 000124 398 LLKP-HDNKLVQERVLEAMASL-YG-NIFLSQWVSHAEAKKVLIGLIT------MATADVREYLIL---SLTKLCRRE-V 464 (2138)
Q Consensus 398 LL~s-~~~e~vr~~Aa~AL~~L-~~-n~~~~~~L~e~~gI~~LV~LL~------sss~evq~~Aa~---aL~~Ls~~s-~ 464 (2138)
.+.. .++......+...+..+ ++ -+.++....+....+..+.++. .+.++.+.-++. .+..++... .
T Consensus 288 ~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i 367 (678)
T KOG1293|consen 288 CIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEI 367 (678)
T ss_pred hheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcch
Confidence 0000 11111111111112111 11 1122222333344444444432 233333333321 112222221 2
Q ss_pred hhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHh
Q 000124 465 GIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILC 544 (2138)
Q Consensus 465 ~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs 544 (2138)
+.+..+.+.-....+.......+...+..|+.++.++++....-|..+-...+..+|+++|..++..++..+.++|+||.
T Consensus 368 ~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV 447 (678)
T KOG1293|consen 368 SLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV 447 (678)
T ss_pred hHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence 33444444444444555555667778888888888887754555555666788999999999999999999999999999
Q ss_pred cCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhc
Q 000124 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL 624 (2138)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~ 624 (2138)
.+-...+..+.+.|+|..+..++.+.++.++..+.|+|.++....+. ..+..
T Consensus 448 mefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de---------------~~k~~------------- 499 (678)
T KOG1293|consen 448 MEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE---------------EEKFQ------------- 499 (678)
T ss_pred hhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH---------------HHHHH-------------
Confidence 98888899999999999999999999999999999999999765321 11110
Q ss_pred chHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhh
Q 000124 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLAT 677 (2138)
Q Consensus 625 ~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive 677 (2138)
..++. ....++.+.++++++++|.+...|.|+..+..+....+.+
T Consensus 500 ---~~~ki-----~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 500 ---LLAKI-----PANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred ---HHHHh-----hHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 11111 3456778888999999999999999998754444444433
No 119
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1e-08 Score=123.61 Aligned_cols=380 Identities=15% Similarity=0.143 Sum_probs=272.9
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHh
Q 000124 100 AKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ 179 (2138)
Q Consensus 100 vr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~L 179 (2138)
....|..+|.+|+.+...-.+++....+..|++.|...+.+........|..||..+ +++..+.+.|.|..|+++
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-----eNK~~M~~~~iveKL~kl 353 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-----ENKIVMEQNGIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-----cchHHHHhccHHHHHHHh
Confidence 344566777999999999999999999999999999988999999999999999753 347789999999999999
Q ss_pred hCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccch
Q 000124 180 LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGA 259 (2138)
Q Consensus 180 L~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~Ga 259 (2138)
+.... +.++...+..|.|++-+.- ....|++.|-+|.+..+|.++. -...|+..|+.++ .+.+.+..+....+
T Consensus 354 fp~~h---~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S-~dD~~K~MfayTdc 426 (791)
T KOG1222|consen 354 FPIQH---PDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLS-CDDDAKAMFAYTDC 426 (791)
T ss_pred cCCCC---HHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhc-cCcHHHHHHHHHHH
Confidence 97644 5688899999999988654 4488999999999999998863 2355788888888 45556666777889
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhHHHHHHHHHHhh
Q 000124 260 VKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALANIY 338 (2138)
Q Consensus 260 L~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s-~s~e~mq~~~~~alqe~Al~ALanIs 338 (2138)
++.+.+.+-.+.+..+-..-.....|++. +..+.+.+.+.+|++.|.+.... .+.-.| ..++.++.--
T Consensus 427 i~~lmk~v~~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~lLm----------K~vRniSqHe 495 (791)
T KOG1222|consen 427 IKLLMKDVLSGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLLLM----------KVVRNISQHE 495 (791)
T ss_pred HHHHHHHHHhcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchHHH----------HHHHHhhhcc
Confidence 99999888656665665444444567777 46666778888999999985544 222112 1222222222
Q ss_pred cCchh-HHHH---hhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCC-CcccchhhHHHHHHHHcCCC-ChhHHHHHHH
Q 000124 339 GGMPA-LVVY---LGELSQSPRLAAPVADIIGALAYALMVFEQKSGVD-DEPFDARQIEDILVMLLKPH-DNKLVQERVL 412 (2138)
Q Consensus 339 Ggis~-LI~~---L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~-~~~~~~~~Ie~~LV~LL~s~-~~e~vr~~Aa 412 (2138)
|.... .|.+ |.......++..-....+|.++..- + ++-. ...+.....+|++...+.+. +.++.....+
T Consensus 496 g~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~--v---~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~v 570 (791)
T KOG1222|consen 496 GATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLK--V---TDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIV 570 (791)
T ss_pred chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcc--c---CCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHH
Confidence 21211 2333 3344555555444455555554321 0 1111 23345556779998888775 3344778888
Q ss_pred HHHHHhhcCchhHHHHhhhchHHHHHHHHcc--CCHHHHHHHHHHHHHhhhccchhhHHhh-hchhHHHHHHHhcCCchh
Q 000124 413 EAMASLYGNIFLSQWVSHAEAKKVLIGLITM--ATADVREYLILSLTKLCRREVGIWEAIG-KREGIQLLISLLGLSSEQ 489 (2138)
Q Consensus 413 ~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~s--ss~evq~~Aa~aL~~Ls~~s~~~~~~I~-e~ggIp~LV~LL~s~d~~ 489 (2138)
.+++.++++.++...+...+.+..++.++.. .+.+...+.+..+..+..+ ...+..++ +...-..++.++...+..
T Consensus 571 i~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~e 649 (791)
T KOG1222|consen 571 IACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAE 649 (791)
T ss_pred HHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhcccHH
Confidence 8899999999988888899999999999975 4567777777778888877 34444444 444455699999999999
Q ss_pred hHHHHHHHHHHHhhcCchh
Q 000124 490 HQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
+|+.+-.+|-.++.++.+-
T Consensus 650 iRkVCDn~LdIiae~d~EW 668 (791)
T KOG1222|consen 650 IRKVCDNALDIIAEHDKEW 668 (791)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 9999999998888865443
No 120
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.12 E-value=1.9e-10 Score=125.17 Aligned_cols=115 Identities=14% Similarity=0.252 Sum_probs=89.4
Q ss_pred eEEEEEecccccccccCCCCceEEEEecCCCCc-cccccccCCCCCccccceeeecCCCCCCeEEEEEeec-CCC----C
Q 000124 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPR-QTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSK-NTF----G 2084 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~-~~~----~ 2084 (2138)
.|.|.|.+|.+|-- +.||||.|.+ .|... +|+|+.++.||.|+|+|+|. ++|.=..+.|.|+.. +.+ +
T Consensus 12 sL~v~V~EAk~Lp~---~~~~Y~~i~L-d~~~vaRT~v~~~~~nP~W~E~F~f~--~~~~~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 12 SLKLWIIEAKGLPP---KKRYYCELCL-DKTLYARTTSKLKTDTLFWGEHFEFS--NLPPVSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEccCCCC---cCCceEEEEE-CCEEEEEEEEEcCCCCCcceeeEEec--CCCcccEEEEEEEEccCccccccC
Confidence 48999999999943 3489999999 55554 79999999999999999994 343346799999533 444 4
Q ss_pred CcccceEEEEecceeecceecceeecCCCCCCC--------CCccceEEEEEecC
Q 000124 2085 KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKD--------SSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2085 k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~w~~ 2131 (2138)
-+.+|+|.|.+++|.....+..+|+|.+.+.+. +...+|.|.+++.+
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 479999999999999888899999999995443 22344556666654
No 121
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.11 E-value=7e-11 Score=127.75 Aligned_cols=103 Identities=16% Similarity=0.275 Sum_probs=77.7
Q ss_pred CceEEEEEecccccccc----cCCCCceEEEEecCCCCc----cccccccCCCCCccccceeeecCCCC-CCeEEEEEee
Q 000124 2009 PGCLTVTIKRGNNLKQT----MGTTNAFCRLTIGNGPPR----QTKVVSHSISPEWKEGFTWAFDVPPK-GQKLHIICKS 2079 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~t~~~~~~~~p~w~~~f~~~~~~~p~-~~~l~~~~~~ 2079 (2138)
-|-|+|+|++|.||... .+..||||++.+..+..| ||+|+++++||+|||.|.|.+...=+ +-.|.++||+
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 47799999999999332 256899999999665433 79999999999999999997542211 4579999999
Q ss_pred cCCCC-CcccceEEEEecceeecceecceeecCCC
Q 000124 2080 KNTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2080 ~~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
++.|| .+.+|+|.+.+.. ...+...+..+..+
T Consensus 94 ~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~ 126 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDN 126 (138)
T ss_pred CCCCcCcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence 99996 5689999999864 22233444444444
No 122
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.11 E-value=7.7e-11 Score=127.60 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=82.6
Q ss_pred CceEEEEEecccccc--cccCCCCceEEEEecCCC-----CccccccccCCCCCccccceeeecCC-CCCCeEEEEEeec
Q 000124 2009 PGCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGP-----PRQTKVVSHSISPEWKEGFTWAFDVP-PKGQKLHIICKSK 2080 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~t~~~~~~~~p~w~~~f~~~~~~~-p~~~~l~~~~~~~ 2080 (2138)
.|-|+|+|++|.||. +.-|..||||++.+..++ +|||+|++++.||+|||+|.|.+..- .....|++.||++
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 388999999999994 444789999999995432 45799999999999999999987532 2456899999999
Q ss_pred CCC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+.+ .++.+|.|.|.+...- .++...+|.+...
T Consensus 94 ~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~ 126 (138)
T cd08408 94 RKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKES 126 (138)
T ss_pred CCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhC
Confidence 877 6678999999886432 3345677888766
No 123
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.8e-07 Score=115.51 Aligned_cols=657 Identities=15% Similarity=0.139 Sum_probs=351.6
Q ss_pred CcHHHHHHHHh---cCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh---ccCCHHHHHHHHHHHHHhhcCCC
Q 000124 84 QAMPLFISILR---SGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLL---KSESTDTRKAAAEALYEVSSGGL 157 (2138)
Q Consensus 84 GgVp~LV~LLk---s~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL---~sed~eVr~aAa~AL~nLS~~~~ 157 (2138)
.|+..+.++|+ |++++++.++...|-.+-..++-. -.|+=+| ++++..+|..|--.|.|=-..+.
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfn---------nYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~ 80 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFN---------NYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY 80 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchh---------ceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence 46777777776 468888888888876663333211 1111122 23466666666666665443322
Q ss_pred CCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHH-HHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHH
Q 000124 158 SDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGAL-RNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSN 235 (2138)
Q Consensus 158 nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL-~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~ 235 (2138)
+........+++..+++.+ .. .++-++ ...+.+ ..+.+.. -..| ..+++.|+.+|.+++...++.
T Consensus 81 ~~~~~~~~~yiKs~~l~~l----gd---~~~lIr-~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d~n~~Eg 147 (885)
T KOG2023|consen 81 NSIPSEVLDYIKSECLHGL----GD---ASPLIR-ATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPDYNTCEG 147 (885)
T ss_pred cCCChHHHHHHHHHHHhhc----cC---chHHHH-hhhhheeeeeecccccccc-----hhHHHHHHHHhcCCcccccch
Confidence 2122222333343333322 11 122222 222222 2222211 1112 236899999999999999999
Q ss_pred HHHHHHHHHhhcCCCcch-hhc---cchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhc
Q 000124 236 AASLLARLMLAFGDSIPT-VID---SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIV 311 (2138)
Q Consensus 236 A~~aL~nLs~~~~e~r~~-l~~---~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~ 311 (2138)
|..+|+.+|.++.+.-.. ..+ .-.+|.+++.+++ +++.+|..|..++-......+..- ...-+.-++.+..+-.
T Consensus 148 A~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qal-~~~iD~Fle~lFalan 225 (885)
T KOG2023|consen 148 AFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQAL-YVHIDKFLEILFALAN 225 (885)
T ss_pred hHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHHH-HHHHHHHHHHHHHHcc
Confidence 999999999543322111 001 1368889999985 467999999888877655322111 1111334555555555
Q ss_pred CCchhhhhhhhhhhhHHHHHHHHHHhhcCchh-HHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhh
Q 000124 312 APSKECMQGQRGQALQGHATRALANIYGGMPA-LVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390 (2138)
Q Consensus 312 s~s~e~mq~~~~~alqe~Al~ALanIsGgis~-LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~ 390 (2138)
+++++ ++.+...+|..+-...+. +++ .-.+
T Consensus 226 D~~~e---------VRk~vC~alv~Llevr~dkl~p----------------------------------------hl~~ 256 (885)
T KOG2023|consen 226 DEDPE---------VRKNVCRALVFLLEVRPDKLVP----------------------------------------HLDN 256 (885)
T ss_pred CCCHH---------HHHHHHHHHHHHHHhcHHhccc----------------------------------------chHH
Confidence 66555 556666665554321110 000 0113
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhh--chHHHHHH----------HHccC--------------
Q 000124 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHA--EAKKVLIG----------LITMA-------------- 444 (2138)
Q Consensus 391 Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~--~gI~~LV~----------LL~ss-------------- 444 (2138)
+++++.......+.. +-..|+.-...++..+.+...+... ..++.|+. |+.+.
T Consensus 257 IveyML~~tqd~dE~-VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIk 335 (885)
T KOG2023|consen 257 IVEYMLQRTQDVDEN-VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIK 335 (885)
T ss_pred HHHHHHHHccCcchh-HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhcc
Confidence 333443333333332 4444444444444444222222211 12222222 11100
Q ss_pred --------------------------------CHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHH
Q 000124 445 --------------------------------TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQE 492 (2138)
Q Consensus 445 --------------------------------s~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~ 492 (2138)
+...|+..+.+|--++.-- +..+. .-.+|.|.+.|.+++..+|+
T Consensus 336 PRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf---~~elL-~~l~PlLk~~L~~~~W~vrE 411 (885)
T KOG2023|consen 336 PRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF---GDELL-PILLPLLKEHLSSEEWKVRE 411 (885)
T ss_pred chhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhh---HHHHH-HHHHHHHHHHcCcchhhhhh
Confidence 0124444444444433210 00110 12356666777788889999
Q ss_pred HHHHHHHHHhhcCchhHHHHHh--cCCchHHHHHhhhCCHHHHHHHHHHHHHHhcC--ChhHHHHHHHcCCcchhhhccc
Q 000124 493 YAVQLIAILTEQVDDSKWAITA--AGGIPPLVQLLEAGSQKAREVAAHVLWILCCH--SEDIRACVESAGAVPAFLWLLK 568 (2138)
Q Consensus 493 ~Aa~aL~nLa~~s~e~r~~I~~--aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~--sd~~r~~I~e~GaI~aLv~LLk 568 (2138)
.++-+|+.++.+.-+ -++. ...+|.|+.+|.+..+-+|..+||+|+..+.. .+...+.+ ...+..|++.+-
T Consensus 412 agvLAlGAIAEGcM~---g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~~ll 486 (885)
T KOG2023|consen 412 AGVLALGAIAEGCMQ---GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLRRLL 486 (885)
T ss_pred hhHHHHHHHHHHHhh---hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHHHHh
Confidence 999999999863211 1111 13577888899999999999999999998762 11111111 112333444455
Q ss_pred cCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcC--------CCcchHHHHHHHHHHHHhh----hcchHHHHhhhccc
Q 000124 569 SGGPKGQDASAMALTKLIRAADSATINQLLALLLG--------DSPSSKAHVIKVLGHVLTM----ALQEDLVQKGSAAN 636 (2138)
Q Consensus 569 S~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~--------~d~~V~~~A~~AL~~La~~----~~~~d~v~~~l~~~ 636 (2138)
+++..+|+.|+.++.-+-..+..+.+|.|-.+|.. ...+. .-...|++.|+.. .+++..++..
T Consensus 487 D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL-lILYDAIgtlAdsvg~~Ln~~~YiqiL---- 561 (885)
T KOG2023|consen 487 DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL-LILYDAIGTLADSVGHALNKPAYIQIL---- 561 (885)
T ss_pred cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce-ehHHHHHHHHHHHHHHhcCcHHHHHHh----
Confidence 78999999999999998877666666665555431 11111 1134566666533 2334333332
Q ss_pred chhhHHHH---hhcCC-------------------------CHHHHHHHHHHHHHH----hhc-----------------
Q 000124 637 KGLRSLVQ---VLNSS-------------------------NEENQEYAASVLADL----FSM----------------- 667 (2138)
Q Consensus 637 GaI~aLV~---LLks~-------------------------s~evre~Aa~ALanL----~s~----------------- 667 (2138)
+++|++ +++++ .+++-..+.+.+.+- ...
T Consensus 562 --mPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~s 639 (885)
T KOG2023|consen 562 --MPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVS 639 (885)
T ss_pred --ccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEe
Confidence 344433 22222 244444555554422 110
Q ss_pred -----------ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcC
Q 000124 668 -----------RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS 736 (2138)
Q Consensus 668 -----------~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~ 736 (2138)
.......+.+.+...-+...+.|..++||..|-.-|+.++...++ ..+- .-+..++.|-.-++..
T Consensus 640 LDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~--~v~p--~~~~fl~~lg~Nl~~~ 715 (885)
T KOG2023|consen 640 LDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFE--HVIP--NLADFLPILGANLNPE 715 (885)
T ss_pred HHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH--hccc--hHHHHHHHHhhcCChh
Confidence 011112234556677777888999999999888888888863222 1111 1122333333334456
Q ss_pred CHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCC--CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhH
Q 000124 737 SIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVV 812 (2138)
Q Consensus 737 s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~--~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav 812 (2138)
...+..+|++|++-++. ..+....+ ...+..|+..++.. ...+-++.+-.+++|+...| +.+. ... ...+
T Consensus 716 ~isv~nNA~WAiGeia~k~g~~~~~~v--~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~P--e~vA-p~l-~~f~ 789 (885)
T KOG2023|consen 716 NISVCNNAIWAIGEIALKMGLKMKQYV--SPVLEDLITIINRQNTPKTLLENTAITIGRLGYICP--EEVA-PHL-DSFM 789 (885)
T ss_pred hchHHHHHHHHHHHHHHHhchhhhhHH--HHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCH--Hhcc-hhH-HHHH
Confidence 67888999999999975 22322222 22455555555544 35688999999999998764 3332 222 3345
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 813 LTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 813 ~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
.+-...++.-+++ ..+..|.+-+.++-.
T Consensus 790 ~pWc~sl~~i~Dn-eEK~sAFrG~c~mi~ 817 (885)
T KOG2023|consen 790 RPWCTSLRNIDDN-EEKESAFRGLCNMIN 817 (885)
T ss_pred HHHHHHhcccccc-hhHHHHHHHHHHhee
Confidence 5555666544333 458889998888775
No 124
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.08 E-value=1.3e-05 Score=104.16 Aligned_cols=490 Identities=17% Similarity=0.135 Sum_probs=267.4
Q ss_pred CChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHH-ccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHH
Q 000124 402 HDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLI-TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2138)
Q Consensus 402 ~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL-~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV 480 (2138)
..+..+|++++.+++.+..+.. .+...+-...|.-++ +.+++-.+..|+.++..++...-..-..-.-..+++.+.
T Consensus 581 d~DqeVkeraIscmgq~i~~fg---D~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~ 657 (1233)
T KOG1824|consen 581 DSDQEVKERAISCMGQIIANFG---DFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELA 657 (1233)
T ss_pred cccHHHHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHH
Confidence 3344599999999988744321 111111122233333 235677889999999988876433321112245678888
Q ss_pred HHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCc
Q 000124 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2138)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI 560 (2138)
+.++......|.....++-.|..+..+.-..-.-.-.+..+-.++...+..+-..|...|..+.......- .-.....+
T Consensus 658 ~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~iL 736 (1233)
T KOG1824|consen 658 SFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNPIL 736 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhhhH
Confidence 88887777778777777777665321111000001122223334445577788888888888876433221 22335567
Q ss_pred chhhhccccCChhHHHHHHHHHHHHHHh----hchhh-HHHHHHHhcCCCcc-----hHHHH----HHHHHHHHhhhcch
Q 000124 561 PAFLWLLKSGGPKGQDASAMALTKLIRA----ADSAT-INQLLALLLGDSPS-----SKAHV----IKVLGHVLTMALQE 626 (2138)
Q Consensus 561 ~aLv~LLkS~~~evq~~Aa~AL~nLs~~----~e~~a-I~~Li~LL~~~d~~-----V~~~A----~~AL~~La~~~~~~ 626 (2138)
+.++.+++|+ -++..+..++.++... ...+. ...+..++.....+ ...++ +.|.+.|....+.
T Consensus 737 ~~ii~ll~Sp--llqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~- 813 (1233)
T KOG1824|consen 737 DEIIRLLRSP--LLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQ- 813 (1233)
T ss_pred HHHHHHhhCc--cccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccc-
Confidence 7788888764 5566666666666543 11111 55566666643322 22233 3344433322111
Q ss_pred HHHHhhhcccchhhHHHHhhcCC--CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000124 627 DLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2138)
Q Consensus 627 d~v~~~l~~~GaI~aLV~LLks~--s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALa 704 (2138)
. .......|++=++++ +..+|-.|.-.|+.+....+. ....+.-..+++.+.+.+++++.+|+.||+
T Consensus 814 -~------s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~----s~~~e~~~~iieaf~sp~edvksAAs~ALG 882 (1233)
T KOG1824|consen 814 -K------SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL----SPQNELKDTIIEAFNSPSEDVKSAASYALG 882 (1233)
T ss_pred -c------chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----CcchhhHHHHHHHcCCChHHHHHHHHHHhh
Confidence 0 011244455544433 566777888888887663111 112234446778889999999999999999
Q ss_pred HhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhC----CC
Q 000124 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAE----GT 778 (2138)
Q Consensus 705 nLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~----~~ 778 (2138)
+++.++-+ ..++-++....+.. .-+.--+..|-.... ..+ .....++.+..+|.. ..
T Consensus 883 sl~vgnl~-----------~yLpfil~qi~sqp-k~QyLLLhSlkevi~~~svd-----~~~~~v~~IW~lL~k~cE~~e 945 (1233)
T KOG1824|consen 883 SLAVGNLP-----------KYLPFILEQIESQP-KRQYLLLHSLKEVIVSASVD-----GLKPYVEKIWALLFKHCECAE 945 (1233)
T ss_pred hhhcCchH-----------hHHHHHHHHHhcch-HhHHHHHHHHHHHHHHhccc-----hhhhhHHHHHHHHHHhcccch
Confidence 99873322 25566666665532 112222222222111 011 112234445554432 24
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCccccccc
Q 000124 779 SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAE 858 (2138)
Q Consensus 779 ~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~ 858 (2138)
+..|.-.++||+.|+...| ....++|-..++++.... +.-++.+..+.-+. .+..++ .-
T Consensus 946 egtR~vvAECLGkL~l~ep-----------esLlpkL~~~~~S~a~~~--rs~vvsavKfsisd--~p~~id------~~ 1004 (1233)
T KOG1824|consen 946 EGTRNVVAECLGKLVLIEP-----------ESLLPKLKLLLRSEASNT--RSSVVSAVKFSISD--QPQPID------PL 1004 (1233)
T ss_pred hhhHHHHHHHhhhHHhCCh-----------HHHHHHHHHHhcCCCcch--hhhhhheeeeeecC--CCCccC------HH
Confidence 5568889999999998653 557788888887665443 44444443333221 223332 00
Q ss_pred CCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHH--Hhccc
Q 000124 859 VPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI--CAAKE 936 (2138)
Q Consensus 859 ~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i--~a~k~ 936 (2138)
...-+..+...+.+++..+|+-|+.++.....+.| .+|..|...++---..|..+.. -+| .=...
T Consensus 1005 lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKp-----------slIrDllpeLLp~Ly~eTkvrk--elIreVeMGP 1071 (1233)
T KOG1824|consen 1005 LKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKP-----------SLIRDLLPELLPLLYSETKVRK--ELIREVEMGP 1071 (1233)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCH-----------hHHHHHHHHHHHHHHHhhhhhH--hhhhhhcccC
Confidence 12246678888999999999999999999887766 4556666555422222211111 111 12334
Q ss_pred chhhHHHHHhhcCCcHHHHHHHHH
Q 000124 937 HKKQSMDALDLSGYLKPLIYALVD 960 (2138)
Q Consensus 937 ~~~~~~~~L~~~g~~~~~i~~Lv~ 960 (2138)
|.-+.=++|+.-.++=.-++.|+|
T Consensus 1072 FKH~VDdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1072 FKHTVDDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred ccccccchHHHHHHHHHHHHHHHH
Confidence 544555555444444444454443
No 125
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.07 E-value=1e-10 Score=113.79 Aligned_cols=80 Identities=30% Similarity=0.568 Sum_probs=70.9
Q ss_pred EEEEEeccccccc--ccCCCCceEEEEecCCCC--ccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Cc
Q 000124 2012 LTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPP--RQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KS 2086 (2138)
Q Consensus 2012 l~v~v~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~ 2086 (2138)
|.|+|++|.||.. ..+..||||++.+...+. ++|++++.+.+|.|||+|.|.+..++..+ |+|+||+++.++ ++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~-l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS-LSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTE-EEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccc-eEEEEEECCCCCCCC
Confidence 7899999999944 558999999999966665 67999999999999999999998886666 999999999998 88
Q ss_pred ccceEE
Q 000124 2087 TLGKVT 2092 (2138)
Q Consensus 2087 ~~g~~~ 2092 (2138)
.+|+|.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 899873
No 126
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=3.1e-07 Score=111.23 Aligned_cols=372 Identities=14% Similarity=0.144 Sum_probs=271.8
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCC
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~ 486 (2138)
.-.-|..-|.+++.+-.....+.....+.+|+..+..++.+...-....|..++-- .+++..+.+.|.+..|++++...
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCC
Confidence 33455566788888888878888889999999999999999888888999999887 57888888899999999999999
Q ss_pred chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhc
Q 000124 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566 (2138)
Q Consensus 487 d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~L 566 (2138)
+++.+...+..|-|++. +...|..++..|.+|.|+.+|.+... ...|...|..+++ ++..+.++....+|+.+.+.
T Consensus 358 h~dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred CHHHHHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 67889999999999999999977533 3457788888887 56778888999999999865
Q ss_pred ccc-CChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhc-chHHHHhhhcccc
Q 000124 567 LKS-GGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL-QEDLVQKGSAANK 637 (2138)
Q Consensus 567 LkS-~~~evq~~Aa~AL~nLs~~~e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~-~~d~v~~~l~~~G 637 (2138)
+-+ .+.++-........|++.... -..+..|++..-...+- .....++++++... ....+- +
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~---lLmK~vRniSqHeg~tqn~Fi------d 504 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL---LLMKVVRNISQHEGATQNMFI------D 504 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccch---HHHHHHHHhhhccchHHHHHH------H
Confidence 443 344554444445557765421 22344444443222222 23344555554322 111111 2
Q ss_pred hhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCCccc
Q 000124 638 GLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--TQMVATQSARALGALSRPTKTKT 714 (2138)
Q Consensus 638 aI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dg--s~~Vk~~AA~ALanLa~s~~~~d 714 (2138)
.+..|...++.. +++--..+.+.|+||...+-+-...+-+...+|-+-..|..+ .++......-+++.+++ ..
T Consensus 505 yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--d~-- 580 (791)
T KOG1222|consen 505 YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--DL-- 580 (791)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--hh--
Confidence 466677777666 445566788999999875566666666678888888888765 33456666666677665 21
Q ss_pred chhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCCchHHHHHHhcC-cHHHHHHHHhCCCHHHHHHHHHHHHH
Q 000124 715 TNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLED-VVSALTRVLAEGTSEGKKNASRALHQ 791 (2138)
Q Consensus 715 ~~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g-~L~~LV~LL~~~~~~Vr~~Aa~AL~n 791 (2138)
....-+..+++|+.|+.+|+. .+++..-+...++..+..+...|..++++. .-..++.+|++.+.++|+-+-.+|--
T Consensus 581 ~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdI 660 (791)
T KOG1222|consen 581 DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDI 660 (791)
T ss_pred HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344445678899999999987 566777778888888887877777776655 45668899999999999998888877
Q ss_pred hhhcC
Q 000124 792 LLKHF 796 (2138)
Q Consensus 792 L~~~~ 796 (2138)
++.+.
T Consensus 661 iae~d 665 (791)
T KOG1222|consen 661 IAEHD 665 (791)
T ss_pred HHHhh
Confidence 77653
No 127
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=98.94 E-value=1.3e-09 Score=116.77 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=78.4
Q ss_pred CCceEEEEEecccccccc--cCCCCceEEEEecCCC----CccccccccCC-CCCccccceeeecCCCCCC-eEEEEEee
Q 000124 2008 LPGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGP----PRQTKVVSHSI-SPEWKEGFTWAFDVPPKGQ-KLHIICKS 2079 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~t~~~~~~~-~p~w~~~f~~~~~~~p~~~-~l~~~~~~ 2079 (2138)
.+|-|+|+|++|-||.-. -+..||||++.+-.+. +|||+|+++++ +|.|||+|.|.+..+ ..+ .|.|+||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~-~~~v~l~v~v~d 90 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQ-EHGIQFLIKLYS 90 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCch-hheeEEEEEEEe
Confidence 578999999999999542 2556999999774322 34699999997 589999999999754 444 78999999
Q ss_pred cCCC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2080 KNTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2080 ~~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
++.+ ++|.+|+|.+-.+.. .......+.....+
T Consensus 91 ~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~ 124 (135)
T cd08692 91 RSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIAN 124 (135)
T ss_pred CCCCcCCceEEEEEECCccC-CchhhhhHHHHHhC
Confidence 9876 677899999988753 22234555555554
No 128
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.93 E-value=2.3e-09 Score=106.69 Aligned_cols=92 Identities=28% Similarity=0.558 Sum_probs=78.9
Q ss_pred eEEEEEecccccccc--cCCCCceEEEEecCC--CCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-C
Q 000124 2011 CLTVTIKRGNNLKQT--MGTTNAFCRLTIGNG--PPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-K 2085 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k 2085 (2138)
.|.|+|+.++|+... .+..||||++.+... ..++|+++.++.||.|||+|.|.+..+. ++.|.|+||+++.++ .
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~~~~~ 79 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDRFGRD 79 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCCccCC
Confidence 378999999999544 247999999999544 3678999999999999999999998775 999999999998885 8
Q ss_pred cccceEEEEecceeecce
Q 000124 2086 STLGKVTIQIDKVVTEGV 2103 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~~~~ 2103 (2138)
..+|++.|.++++..+.+
T Consensus 80 ~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 80 DFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred ceeEEEEEEHHHcccCcc
Confidence 899999999998876554
No 129
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.93 E-value=0.00018 Score=94.02 Aligned_cols=736 Identities=13% Similarity=0.107 Sum_probs=358.2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChh
Q 000124 84 QAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162 (2138)
Q Consensus 84 GgVp~LV~LLks~~~evr~~Aa~~L~~Ls~-~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~ 162 (2138)
..+..++++|.+.+.+++..|.++|+-|.+ -.+.+.+ -.+..|+.-+-++-...|.-+.-.|...-.+- ++
T Consensus 47 kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl-~P--- 118 (1233)
T KOG1824|consen 47 KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANL-PP--- 118 (1233)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcC-CC---
Confidence 468899999999999999999999998862 2222211 12344443332322333333333332222110 00
Q ss_pred hHHHHHHcCcHHHHHHhhCCCC-C--CChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHH
Q 000124 163 GMKIFVTEGVVPTLWDQLNPKN-K--QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASL 239 (2138)
Q Consensus 163 gre~IveaG~Ip~Ll~LL~s~s-~--ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~a 239 (2138)
....+....+.+.+...+.... . ....++..++..+.-+-+.--+-..- .+.+-...++.-+.+....++..++.+
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~ 197 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITA 197 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 0112233344555554443321 0 11224444444444433322111111 233445556666677778899999999
Q ss_pred HHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhh
Q 000124 240 LARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQ 319 (2138)
Q Consensus 240 L~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq 319 (2138)
|..++... ....-.+.+..|++-|.+......-+.-..+|..++. ....|..-.-...++.+.+++..-..
T Consensus 198 l~~la~~~----~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r-~ag~r~~~h~~~ivp~v~~y~~~~e~---- 268 (1233)
T KOG1824|consen 198 LGHLASSC----NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICR-QAGHRFGSHLDKIVPLVADYCNKIEE---- 268 (1233)
T ss_pred HHHHHHhc----CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH-HhcchhhcccchhhHHHHHHhccccc----
Confidence 99998432 2233445777777777643332222222333333333 12223222335678888888833211
Q ss_pred hhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHc
Q 000124 320 GQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLL 399 (2138)
Q Consensus 320 ~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL 399 (2138)
..+.+++.++++|...-..-+. +.+.+. .+-.--.+..+.| ||......- ++.....+-.-=
T Consensus 269 --~dDELrE~~lQale~fl~rcp~------ei~p~~--pei~~l~l~yisY-------DPNy~yd~~-eDed~~~~ed~e 330 (1233)
T KOG1824|consen 269 --DDDELREYCLQALESFLRRCPK------EILPHV--PEIINLCLSYISY-------DPNYNYDTE-EDEDAMFLEDEE 330 (1233)
T ss_pred --CcHHHHHHHHHHHHHHHHhChh------hhcccc--hHHHHHHHHHhcc-------CCCCCCCCc-cchhhhhhhccc
Confidence 1122778888776553211110 000000 0000111112222 122111100 001111111000
Q ss_pred ------CCCC----hhHHHHHHHHHHHHh-hcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccc----
Q 000124 400 ------KPHD----NKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREV---- 464 (2138)
Q Consensus 400 ------~s~~----~e~vr~~Aa~AL~~L-~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~---- 464 (2138)
...+ .+.+|+.++.++..+ ..+.+.-..+... .-+.++.-+....+.++.....++..+-.+.+
T Consensus 331 Dde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~-l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~ 409 (1233)
T KOG1824|consen 331 DDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQT-LGPALISRFKEREENVKADVFHAYIALLKQTRPVIE 409 (1233)
T ss_pred cchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcc
Confidence 0011 134788888888766 3333322222221 11334555555455555555544443332211
Q ss_pred --------------hhhHHhhhc--hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHh--cCCchHHHHHhh
Q 000124 465 --------------GIWEAIGKR--EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA--AGGIPPLVQLLE 526 (2138)
Q Consensus 465 --------------~~~~~I~e~--ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~--aGaIp~LV~LLk 526 (2138)
...+.+.+. ..+..+-+.+++.+...+..+...|..+....++. ..+ ...+|.+...|.
T Consensus 410 ~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~---l~~~~~slvpgI~~~l~ 486 (1233)
T KOG1824|consen 410 VLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGA---LAQHIPSLVPGIIYSLN 486 (1233)
T ss_pred cccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcch---hhhcccccchhhhhhcC
Confidence 111111100 01222333445555556666666666665533221 111 234666666675
Q ss_pred hC--CHHHHHHHHHHHHHHh-cCChhHHHHHHHcCCcchh----hhccccCChhHHHHHHHHHHHHHHhh----------
Q 000124 527 AG--SQKAREVAAHVLWILC-CHSEDIRACVESAGAVPAF----LWLLKSGGPKGQDASAMALTKLIRAA---------- 589 (2138)
Q Consensus 527 s~--d~~vre~Aa~aL~nLs-~~sd~~r~~I~e~GaI~aL----v~LLkS~~~evq~~Aa~AL~nLs~~~---------- 589 (2138)
+. +...+..+...|.++- .++.+ .+ +.-+++| +....+.-+.+...|..++..+...-
T Consensus 487 DkSsss~~ki~~L~fl~~~L~s~~p~--~f---hp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d 561 (1233)
T KOG1824|consen 487 DKSSSSNLKIDALVFLYSALISHPPE--VF---HPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFD 561 (1233)
T ss_pred CccchHHHHHHHHHHHHHHHhcCChh--hc---ccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCC
Confidence 44 5666777776666653 33221 11 2223333 33334455667777777776666431
Q ss_pred ---c-hhhHHHHHHHhc--CCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHH
Q 000124 590 ---D-SATINQLLALLL--GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD 663 (2138)
Q Consensus 590 ---e-~~aI~~Li~LL~--~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALan 663 (2138)
. ...+..-++.|+ +.|++|++.+..|++.+...-. |..+.. -+..++.+++-+ +++-+|-.|++|+.-
T Consensus 562 ~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg--D~l~~e--L~~~L~il~eRl--~nEiTRl~AvkAlt~ 635 (1233)
T KOG1824|consen 562 ASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG--DFLGNE--LPRTLPILLERL--GNEITRLTAVKALTL 635 (1233)
T ss_pred CChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh--hhhhhh--hHHHHHHHHHHH--hchhHHHHHHHHHHH
Confidence 0 123344455554 5677899999999988765433 222221 112344444433 588899999999999
Q ss_pred HhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHH
Q 000124 664 LFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743 (2138)
Q Consensus 664 L~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~e 743 (2138)
++...-..-..-+-..+++.+...++......|.....++-.|..+... .......+ -++..+..|+...+..+.+.
T Consensus 636 Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~--~~~~~~~e-~vL~el~~Lisesdlhvt~~ 712 (1233)
T KOG1824|consen 636 IAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSD--SIPAELLE-AVLVELPPLISESDLHVTQL 712 (1233)
T ss_pred HHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHH-HHHHHhhhhhhHHHHHHHHH
Confidence 9874333222333345778888888887777787777777776652111 11111111 13444556666677788888
Q ss_pred HHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCH------------------------------------------HH
Q 000124 744 AVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTS------------------------------------------EG 781 (2138)
Q Consensus 744 Al~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~------------------------------------------~V 781 (2138)
|...|+.+...+.....-.....++.++.++++.-- .+
T Consensus 713 a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l 792 (1233)
T KOG1824|consen 713 AVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGL 792 (1233)
T ss_pred HHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccch
Confidence 888888886543322222222233333333322211 11
Q ss_pred ----HHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccc
Q 000124 782 ----KKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALA 857 (2138)
Q Consensus 782 ----r~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~ 857 (2138)
-...+.|.+.|+..++ + .....+.+|+.-+.+.+.....+.-|+-.+|.+.+-+... .
T Consensus 793 ~kqa~~siA~cvA~Lt~~~~--~------~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s---~------- 854 (1233)
T KOG1824|consen 793 HKQAYYSIAKCVAALTCACP--Q------KSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS---P------- 854 (1233)
T ss_pred hHHHHHHHHHHHHHHHHhcc--c------cchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC---c-------
Confidence 1112233333333221 0 0123455555555555544444555555555555321110 0
Q ss_pred cCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccC
Q 000124 858 EVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 858 ~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~ 892 (2138)
.+..-..+++.+.+++..++.+|..+|.++..++
T Consensus 855 -~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn 888 (1233)
T KOG1824|consen 855 -QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN 888 (1233)
T ss_pred -chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc
Confidence 1223346788999999999999999999987755
No 130
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.88 E-value=5.3e-08 Score=115.46 Aligned_cols=194 Identities=15% Similarity=0.105 Sum_probs=156.7
Q ss_pred cccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 000124 634 AANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 634 ~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
.+++.++.|+.+|+.. ++.+++.+..++.+.+. .+.++..+.+.|+++.+..++.++++.+|..|..||.|++.. .
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~ 85 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN--D 85 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC--h
Confidence 4566789999999864 89999999999999887 788999999999999999999999999999999999999862 2
Q ss_pred ccchhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHH
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALH 790 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~ 790 (2138)
+++..+.. .+..+++...+ -+.+++..++.+|.||+..++.+..+.. .++.+.+++..|+..+|..+.++|.
T Consensus 86 --en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 86 --ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred --hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34444332 56666665544 3678999999999999988777766644 8999999999999999999999999
Q ss_pred HhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 791 QLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 791 nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
||+.+. .....+....+...++.+++. +.+......++....++..
T Consensus 160 nLS~np----~~~~~Ll~~q~~~~~~~Lf~~-~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 160 NLSENP----DMTRELLSAQVLSSFLSLFNS-SESKENLLRVLTFFENINE 205 (254)
T ss_pred HhccCH----HHHHHHHhccchhHHHHHHcc-CCccHHHHHHHHHHHHHHH
Confidence 999974 444555555688899999964 4444556777777777764
No 131
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.87 E-value=1.1e-07 Score=112.91 Aligned_cols=195 Identities=22% Similarity=0.235 Sum_probs=160.9
Q ss_pred cchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccch
Q 000124 386 FDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG 465 (2138)
Q Consensus 386 ~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~ 465 (2138)
+....+ +.|+.+|+...++.+++.+..++++.+..+..+..+.+.|++..+..++..+++.++..|..+|.+++.+ .+
T Consensus 9 l~~~~l-~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQEL-QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHH-HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 334344 6788888877666799999999999999999999999999999999999999999999999999999987 56
Q ss_pred hhHHhhhchhHHHHHHHhcCC--chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHH
Q 000124 466 IWEAIGKREGIQLLISLLGLS--SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL 543 (2138)
Q Consensus 466 ~~~~I~e~ggIp~LV~LL~s~--d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nL 543 (2138)
++..|. ..++.+.+...+. +..+|..++.+|.||+. ..+++..+ .+.++.++.+|.+|+..+|.++.++|.||
T Consensus 87 n~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 666653 3566666644433 67899999999999987 34555554 34799999999999999999999999999
Q ss_pred hcCChhHHHHHHHcCCcchhhhccccC-ChhHHHHHHHHHHHHHHh
Q 000124 544 CCHSEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 544 s~~sd~~r~~I~e~GaI~aLv~LLkS~-~~evq~~Aa~AL~nLs~~ 588 (2138)
+.+.+..++++. .+++..++.++... +.+....+.+...|+..+
T Consensus 162 S~np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 996666666655 67899999998775 678899999999999876
No 132
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.86 E-value=1.5e-09 Score=129.21 Aligned_cols=106 Identities=25% Similarity=0.424 Sum_probs=90.0
Q ss_pred cCCceEEEEEeccccc--ccccCCCCceEEEEec---CCCCcc-ccccccCCCCCccccceeeecCCCCCCeEEEEEeec
Q 000124 2007 CLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIG---NGPPRQ-TKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSK 2080 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~-t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~ 2080 (2138)
----.|+|+|++|.|| .+-+|-.||||++.+- +++.|| ||.++.++||+|||+|+|-+-..-+.-+|.|||||-
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 3455799999999999 8999999999999883 445554 999999999999999999999888889999999998
Q ss_pred C-CCCCcccceEEEEecceeecceecceeecCCC
Q 000124 2081 N-TFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~-~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
| |.+.+.||....-|.....+. .+|+|.|...
T Consensus 257 DrTsRNDFMGslSFgisEl~K~p-~~GWyKlLsq 289 (683)
T KOG0696|consen 257 DRTSRNDFMGSLSFGISELQKAP-VDGWYKLLSQ 289 (683)
T ss_pred cccccccccceecccHHHHhhcc-hhhHHHHhhh
Confidence 4 668999999999998877654 4677777654
No 133
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=4.4e-05 Score=98.21 Aligned_cols=655 Identities=15% Similarity=0.124 Sum_probs=333.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHH-h-ccCchhHHHHHhc---
Q 000124 52 MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSV-L-CKDEDLRLKVLLG--- 124 (2138)
Q Consensus 52 s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~-L-s~~e~~r~~v~~~--- 124 (2138)
++|.-.+..|-..|..++..+ -.+.+..|.+.|... ++..|..|.-.|+| | ++++..+......
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~n---------f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~ 82 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQN---------FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQ 82 (859)
T ss_pred CCCcchHHHHHHHHHHHHhcc---------HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHc
Confidence 456666788888888887766 134667777777654 45666666666655 4 3444444433321
Q ss_pred ------CChH-HHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCC--CChhHHHHHH
Q 000124 125 ------GCIP-PLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNK--QDNVVQGFVT 195 (2138)
Q Consensus 125 ------G~Ip-~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~--ed~~V~e~Al 195 (2138)
.-|+ .+++.|++..+.....|++++..++....+ .+.-|-|+..|.+... +...+++..+
T Consensus 83 l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP-----------~n~wp~li~~lv~nv~~~~~~~~k~~sl 151 (859)
T KOG1241|consen 83 LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP-----------QNQWPELIVTLVSNVGEEQASMVKESSL 151 (859)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc-----------hhhCHHHHHHHHHhcccccchHHHHHHH
Confidence 1122 344677766677778888888888864322 1233444444432211 1124788999
Q ss_pred HHHHHHhcCCCchhHHHHHhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHHh-hcCCCcchhhccch-HHHHHHHhccCC
Q 000124 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSS--DNAAAQSNAASLLARLML-AFGDSIPTVIDSGA-VKALVQLVGQNN 271 (2138)
Q Consensus 196 ~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s--~s~evq~~A~~aL~nLs~-~~~e~r~~l~~~Ga-L~~LL~LL~s~s 271 (2138)
.+|+.+|.+-+.....-.....+-.++..+.. ++..+|..+.++|++=.. .......+. +..+ +...+..- +++
T Consensus 152 ealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~-ern~iMqvvcEat-q~~ 229 (859)
T KOG1241|consen 152 EALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEM-ERNYIMQVVCEAT-QSP 229 (859)
T ss_pred HHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHh-hhceeeeeeeecc-cCC
Confidence 99999999865541111122346667776654 467899999999987441 110111111 1111 11222222 367
Q ss_pred CHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhh
Q 000124 272 DISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGEL 351 (2138)
Q Consensus 272 d~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~el 351 (2138)
+.+++..|..+|..+-+-.-+.-+......-...-+..+.+++.+ +...+++-=++++. ..
T Consensus 230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~de---------ValQaiEFWstice---EE------- 290 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDE---------VALQAIEFWSTICE---EE------- 290 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH---------HHHHHHHHHHHHHH---HH-------
Confidence 889998888888877663111111111122222233333332222 11111221112221 00
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccch---hhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHH
Q 000124 352 SQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDA---RQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWV 428 (2138)
Q Consensus 352 L~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~---~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L 428 (2138)
.++.... ..+. ++........|.. ..+.|.|..+|...+++ + +.
T Consensus 291 ----------iD~~~e~--~e~~-d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~-------------~-d~------ 337 (859)
T KOG1241|consen 291 ----------IDLAIEY--GEAV-DQGLPPSSKYFARQALQDVVPVLLELLTKQDED-------------D-DD------ 337 (859)
T ss_pred ----------HHHHHHH--HHHh-hcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCC-------------c-cc------
Confidence 0000000 0000 0000000111111 12234444433332211 0 00
Q ss_pred hhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchh
Q 000124 429 SHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 429 ~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
.+...-+.|..+|.-++... +..|+ ...+|-+-+-++++|..-|+.|+.+++.+-......
T Consensus 338 ---------------DdWnp~kAAg~CL~l~A~~~---~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~ 398 (859)
T KOG1241|consen 338 ---------------DDWNPAKAAGVCLMLFAQCV---GDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPD 398 (859)
T ss_pred ---------------ccCcHHHHHHHHHHHHHHHh---cccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchh
Confidence 01122334444444433321 11122 133444555677889999999999999988766667
Q ss_pred HHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH-HHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHH
Q 000124 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR-ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r-~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~ 587 (2138)
+......+++|.++.++.+++--++..++|.|+.++.+..+.. ....-...++.+++-+. +.|.+-.+++|++.+|+.
T Consensus 399 ~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 399 KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE 477 (859)
T ss_pred hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence 7777778999999999998888899999999999976432110 00011222333333333 468899999999999985
Q ss_pred hhchhhHHHHHHHhcCC--CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC---CCHHHHHHHHHHHH
Q 000124 588 AADSATINQLLALLLGD--SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS---SNEENQEYAASVLA 662 (2138)
Q Consensus 588 ~~e~~aI~~Li~LL~~~--d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks---~s~evre~Aa~ALa 662 (2138)
.... -..+. .+.....-.. .+..|++.... ...+.|..|-.+|.
T Consensus 478 a~~e--------A~~s~~qt~~~t~~y~~-----------------------ii~~Ll~~tdr~dgnqsNLR~AAYeALm 526 (859)
T KOG1241|consen 478 AAYE--------AAVSNGQTDPATPFYEA-----------------------IIGSLLKVTDRADGNQSNLRSAAYEALM 526 (859)
T ss_pred HHHH--------hccCCCCCCccchhHHH-----------------------HHHHHHhhccccccchhhHHHHHHHHHH
Confidence 4210 00000 0000000000 01222221111 01233444444444
Q ss_pred HHhhcChhhhhhhhhCC---CHHHHHH-----HhccCC----HHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHH
Q 000124 663 DLFSMRQDICGSLATDE---IVNPCMR-----LLTSNT----QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLI 730 (2138)
Q Consensus 663 nL~s~~~e~r~~Ive~G---aV~~Lv~-----LL~dgs----~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv 730 (2138)
.|....++.+-.++..- +...|-+ .+...+ .+++..-+.+|..+.+.... ..+. ....++..++
T Consensus 527 ElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~--~~~~--~~d~iM~lfl 602 (859)
T KOG1241|consen 527 ELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS--DIRE--VSDQIMGLFL 602 (859)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc--cchh--HHHHHHHHHH
Confidence 44333333222221110 0011111 111111 12444444555555442111 1111 1223455666
Q ss_pred hhhhc-CCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHH-hCCCHHHHHHHHHHHHHhhhcCCCchhhhhhh
Q 000124 731 KLAKT-SSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVL-AEGTSEGKKNASRALHQLLKHFPVGDVLKGNA 806 (2138)
Q Consensus 731 ~LL~s-~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL-~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i 806 (2138)
.++.+ .+.-+.++|..+++.|+. .+...+.+ +...|.|..-| +..+..+...|+...+.|++.= .+++. .
T Consensus 603 ri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL--~~~i~--p 676 (859)
T KOG1241|consen 603 RIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARAL--EDDIL--P 676 (859)
T ss_pred HHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH--Hhhhh--h
Confidence 77777 556677788888888765 23323332 23556666656 4456789999999999999742 12222 2
Q ss_pred hhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 807 QCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 807 ~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
-|.+....|++.|.+...++.++-..+...|.++.
T Consensus 677 y~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAl 711 (859)
T KOG1241|consen 677 YCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIAL 711 (859)
T ss_pred HHHHHHHHHHHHccCccccccccchHHHHHHHHHH
Confidence 24778899999999888888889889988888874
No 134
>PTZ00429 beta-adaptin; Provisional
Probab=98.84 E-value=8.1e-06 Score=109.47 Aligned_cols=470 Identities=13% Similarity=0.059 Sum_probs=289.8
Q ss_pred HHHHHHcCCCChhHHHHHHHHHH-HHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAM-ASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL-~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~ 471 (2138)
.-|...|.+.+.. .+..+++.+ ..+..+.++.. ...-++.++.+.+..+++-+--+|.+.+..+++...
T Consensus 35 ~ELr~~L~s~~~~-~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal--- 104 (746)
T PTZ00429 35 AELQNDLNGTDSY-RKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL--- 104 (746)
T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH---
Confidence 3455566666554 344454433 44433333322 234466688888888888888888888876554321
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r 551 (2138)
-.+..+.+=+.+.|+.+|..|++.++++.. ++.- .-.++++.+.|.+.++.+|+.|+-++..+-..+.
T Consensus 105 --LaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--- 172 (746)
T PTZ00429 105 --LAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--- 172 (746)
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---
Confidence 246778888889999999999999988765 2211 1245667788888999999999999999865333
Q ss_pred HHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc
Q 000124 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ 625 (2138)
Q Consensus 552 ~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~ 625 (2138)
+.+.+.+-++.|.+++.+.++.++.+|..+|..+..... ...+..|+..+.+-++-.+....+.|... ...+.
T Consensus 173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y-~P~~~ 251 (746)
T PTZ00429 173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQ-RPSDK 251 (746)
T ss_pred ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCc
Confidence 233446677888899999999999999999999975421 23344455555554554555555555331 11112
Q ss_pred hHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcC-hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000124 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMR-QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2138)
Q Consensus 626 ~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~-~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALa 704 (2138)
.+. ...+..+...+++.++.+...|++++.++.... ++....+ -.....+++.++ ++++.+|-.+.+.|.
T Consensus 252 ~e~-------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~-~~rl~~pLv~L~-ss~~eiqyvaLr~I~ 322 (746)
T PTZ00429 252 ESA-------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERC-TVRVNTALLTLS-RRDAETQYIVCKNIH 322 (746)
T ss_pred HHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH-HHHHHHHHHHhh-CCCccHHHHHHHHHH
Confidence 111 235778888899999999999999999987532 2221111 112336677764 567789988888887
Q ss_pred HhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHH
Q 000124 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKN 784 (2138)
Q Consensus 705 nLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~ 784 (2138)
-+....+. +... -+..+....++ +..++...+..|..|+.... ... .+..|..+..+.+.+.+++
T Consensus 323 ~i~~~~P~-------lf~~-~~~~Ff~~~~D-p~yIK~~KLeIL~~Lane~N-v~~-----IL~EL~eYa~d~D~ef~r~ 387 (746)
T PTZ00429 323 ALLVIFPN-------LLRT-NLDSFYVRYSD-PPFVKLEKLRLLLKLVTPSV-APE-----ILKELAEYASGVDMVFVVE 387 (746)
T ss_pred HHHHHCHH-------HHHH-HHHhhhcccCC-cHHHHHHHHHHHHHHcCccc-HHH-----HHHHHHHHhhcCCHHHHHH
Confidence 77652221 2222 13333333343 45689999999999985433 233 3356888888999999999
Q ss_pred HHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccC-------------------
Q 000124 785 ASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQG------------------- 845 (2138)
Q Consensus 785 Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~------------------- 845 (2138)
++.++++++...+ .. ....+..|+++++...+ ...+++.++..+-+.-+.
T Consensus 388 aIrAIg~lA~k~~---~~-----a~~cV~~Ll~ll~~~~~---~v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~ 456 (746)
T PTZ00429 388 VVRAIASLAIKVD---SV-----APDCANLLLQIVDRRPE---LLPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEE 456 (746)
T ss_pred HHHHHHHHHHhCh---HH-----HHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccH
Confidence 9999999997542 11 14567778888864322 244566666666431111
Q ss_pred CcccCCccccccc---C---CCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHH-hccC
Q 000124 846 LNFTYPPWAALAE---V---PSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRI-MHSS 918 (2138)
Q Consensus 846 ~~~i~~~~~~~~~---~---~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~i-l~s~ 918 (2138)
..+..-.|..++= . +.-++.++.-..++++.+|...+....+++...|. + ....+..++... -+++
T Consensus 457 ~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~---~----~~~~l~~vL~~~t~~~~ 529 (746)
T PTZ00429 457 EAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ---G----MEPQLNRVLETVTTHSD 529 (746)
T ss_pred HHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH---H----HHHHHHHHHHHHHhcCC
Confidence 0111124555441 1 11222333333456677887888888877776652 0 112233444333 3455
Q ss_pred Cceeehhhh
Q 000124 919 SLEVRVGGA 927 (2138)
Q Consensus 919 ~~ev~~~~~ 927 (2138)
+.+||==+-
T Consensus 530 d~DVRDRA~ 538 (746)
T PTZ00429 530 DPDVRDRAF 538 (746)
T ss_pred ChhHHHHHH
Confidence 667765554
No 135
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=5.5e-06 Score=104.34 Aligned_cols=619 Identities=17% Similarity=0.142 Sum_probs=331.1
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHc--------CcHHHHHHhhCCCCCCChhHHHHHHH
Q 000124 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE--------GVVPTLWDQLNPKNKQDNVVQGFVTG 196 (2138)
Q Consensus 125 G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Ivea--------G~Ip~Ll~LL~s~s~ed~~V~e~Al~ 196 (2138)
.++|.|..+|.++|....+.|..+|..+|.. . ..+.+. -.+|.+++..++++ +.++.+|+.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcED-----s---a~~lds~~~~rpl~~mipkfl~f~~h~s---pkiRs~A~~ 196 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICED-----S---AQFLDSDVLTRPLNIMIPKFLQFFKHPS---PKIRSHAVG 196 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhh-----h---HHHHhhhcccCchHHhHHHHHHHHhCCC---hhHHHHHHh
Confidence 4578999999999989999999999999963 1 122222 26888999988765 678999998
Q ss_pred HHHHHhcCCCchhHHHHHh-CcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhH
Q 000124 197 ALRNLCGDKDGYWRATLEA-GGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISV 275 (2138)
Q Consensus 197 aL~nLcs~~e~r~~aI~e~-GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~v 275 (2138)
++-..--.... ..+.+- .-++.+..+-...++++|.+.|++|.-|....++...... .+.+.+.+..-+ +.+..+
T Consensus 197 cvNq~i~~~~q--al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tq-d~dE~V 272 (885)
T KOG2023|consen 197 CVNQFIIIQTQ--ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQ-DVDENV 272 (885)
T ss_pred hhhheeecCcH--HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHcc-CcchhH
Confidence 88766543221 122211 1244444555667899999999999999966554332221 357777777766 567788
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHh--cCCHHHHHHhhcCCchhh----------hhhhhhhhhHHHHHHHHHHhhcCchh
Q 000124 276 RASAADALEALSSKSIKAKKAVVA--ADGVPVLIGAIVAPSKEC----------MQGQRGQALQGHATRALANIYGGMPA 343 (2138)
Q Consensus 276 r~~Aa~aL~nLs~~s~e~Rk~i~e--~ggL~~LI~LL~s~s~e~----------mq~~~~~alqe~Al~ALanIsGgis~ 343 (2138)
...|+.....++.. +..+..+.. ..-+|.|+.-+.-...+. ......+.++-+-...=....+....
T Consensus 273 ALEACEFwla~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~ 351 (885)
T KOG2023|consen 273 ALEACEFWLALAEQ-PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDAD 351 (885)
T ss_pred HHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccc
Confidence 88999999888884 555554433 455566655442211110 00000000000000000000000000
Q ss_pred HHHHhhhhcCCCCc-----hhh-HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 000124 344 LVVYLGELSQSPRL-----AAP-VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMAS 417 (2138)
Q Consensus 344 LI~~L~elL~~~~s-----s~~-~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~ 417 (2138)
-=..-.+-..+.+. -++ .|..+..++... ..+.+ ..+.|.|...+.+ +...+|+..+-++|.
T Consensus 352 ~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf---------~~elL--~~l~PlLk~~L~~-~~W~vrEagvLAlGA 419 (885)
T KOG2023|consen 352 DEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF---------GDELL--PILLPLLKEHLSS-EEWKVREAGVLALGA 419 (885)
T ss_pred cccccccccccccccccccHhhccHHHHHHHHHhh---------HHHHH--HHHHHHHHHHcCc-chhhhhhhhHHHHHH
Confidence 00000000000000 011 123333333211 00111 1233566666655 456689999999998
Q ss_pred hhcCc--hhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhcc--chhhHHhhhchhHHHHHHHhcCCchhhHHH
Q 000124 418 LYGNI--FLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRRE--VGIWEAIGKREGIQLLISLLGLSSEQHQEY 493 (2138)
Q Consensus 418 L~~n~--~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s--~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~ 493 (2138)
++++- ..-..+. ..+++++.++.+..+-+|.-.+++|...+..- .+....+ ...+..|++.+-+++..+|+.
T Consensus 420 IAEGcM~g~~p~Lp--eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~~llD~NK~VQEA 495 (885)
T KOG2023|consen 420 IAEGCMQGFVPHLP--ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLRRLLDSNKKVQEA 495 (885)
T ss_pred HHHHHhhhcccchH--HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHHHHhcccHHHHHH
Confidence 86431 1111111 35788999999999999999999998877531 1111111 234455566666789999999
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh----------CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchh
Q 000124 494 AVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA----------GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2138)
Q Consensus 494 Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks----------~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aL 563 (2138)
|+.++..+-... . ...+|.|-.+|.+ .+--+.-.|.++|..=..+.-..++.+ .-.+|+|
T Consensus 496 AcsAfAtleE~A-~-------~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yi--qiLmPPL 565 (885)
T KOG2023|consen 496 ACSAFATLEEEA-G-------EELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYI--QILMPPL 565 (885)
T ss_pred HHHHHHHHHHhc-c-------chhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHH--HHhccHH
Confidence 999988775421 1 1223333333321 233445556666655432211112211 2247777
Q ss_pred h---hccccCChhHHHHHHHHHHHHHHhhc--------------hhhHHHHHHHh-cCCC--------cchHHHHHHHHH
Q 000124 564 L---WLLKSGGPKGQDASAMALTKLIRAAD--------------SATINQLLALL-LGDS--------PSSKAHVIKVLG 617 (2138)
Q Consensus 564 v---~LLkS~~~evq~~Aa~AL~nLs~~~e--------------~~aI~~Li~LL-~~~d--------~~V~~~A~~AL~ 617 (2138)
+ .+++++++++- --..+|..++..-. -..+....+++ +... .+.-.-+...++
T Consensus 566 i~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~S 644 (885)
T KOG2023|consen 566 IEKWELLSDSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLS 644 (885)
T ss_pred HHHHHhcCcccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHh
Confidence 7 36666665431 11222222222110 11122112222 1111 111111334444
Q ss_pred HHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh----ccCCH
Q 000124 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL----TSNTQ 693 (2138)
Q Consensus 618 ~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL----~dgs~ 693 (2138)
.|+..... ++...+..++....+.+.+++..+++|+.+...|+.++....+.. . +-+..++.++ ....-
T Consensus 645 GLaegLg~--~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v----~-p~~~~fl~~lg~Nl~~~~i 717 (885)
T KOG2023|consen 645 GLAEGLGS--HIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHV----I-PNLADFLPILGANLNPENI 717 (885)
T ss_pred HHHHHhhh--chHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhc----c-chHHHHHHHHhhcCChhhc
Confidence 44432111 233345566777778888899999999999999999986432221 1 2223333333 23344
Q ss_pred HHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHH
Q 000124 694 MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSAL 770 (2138)
Q Consensus 694 ~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~L 770 (2138)
.+..+|.||++.++.... ......-..++..|+..++. .+..+.++.+-+++.|.. +|+.-.-..+ ..+.+-
T Consensus 718 sv~nNA~WAiGeia~k~g----~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~-~f~~pW 792 (885)
T KOG2023|consen 718 SVCNNAIWAIGEIALKMG----LKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLD-SFMRPW 792 (885)
T ss_pred hHHHHHHHHHHHHHHHhc----hhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHH-HHHHHH
Confidence 688899999999986221 11112222345555556665 345677788888888876 5553222111 123333
Q ss_pred HHHHh-CCCHHHHHHHHHHHHHhhhcCCC
Q 000124 771 TRVLA-EGTSEGKKNASRALHQLLKHFPV 798 (2138)
Q Consensus 771 V~LL~-~~~~~Vr~~Aa~AL~nL~~~~~~ 798 (2138)
..-++ -++.+-|+.|-+-++++....|.
T Consensus 793 c~sl~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 793 CTSLRNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred HHHhcccccchhHHHHHHHHHHheeeCch
Confidence 32233 34677899999999999876653
No 136
>PTZ00429 beta-adaptin; Provisional
Probab=98.84 E-value=5.1e-05 Score=102.03 Aligned_cols=503 Identities=13% Similarity=0.075 Sum_probs=305.6
Q ss_pred cCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC
Q 000124 170 EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGD 249 (2138)
Q Consensus 170 aG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e 249 (2138)
.|=+..|-+.|.+.+ ...-++...+++.++..+.+-. .+.+.+++++.+.+.+++.-+.-.+.+.+..+++
T Consensus 31 kge~~ELr~~L~s~~--~~~kk~alKkvIa~mt~G~DvS-------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 31 RGEGAELQNDLNGTD--SYRKKAAVKRIIANMTMGRDVS-------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred cchHHHHHHHHHCCC--HHHHHHHHHHHHHHHHCCCCch-------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH
Confidence 344556666665543 1223445555677776664422 1566777888888888888887777777643332
Q ss_pred CcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHH
Q 000124 250 SIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGH 329 (2138)
Q Consensus 250 ~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~ 329 (2138)
. ..-++..+.+=+. ++++.+|..|..++.++-.. +.-..+ ++.+.+.+.++++. ++..
T Consensus 102 l-----alLaINtl~KDl~-d~Np~IRaLALRtLs~Ir~~--~i~e~l-----~~~lkk~L~D~~pY---------VRKt 159 (746)
T PTZ00429 102 K-----ALLAVNTFLQDTT-NSSPVVRALAVRTMMCIRVS--SVLEYT-----LEPLRRAVADPDPY---------VRKT 159 (746)
T ss_pred H-----HHHHHHHHHHHcC-CCCHHHHHHHHHHHHcCCcH--HHHHHH-----HHHHHHHhcCCCHH---------HHHH
Confidence 1 1235666666666 46778998888877776552 222222 24455556666544 6677
Q ss_pred HHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHH
Q 000124 330 ATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQE 409 (2138)
Q Consensus 330 Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~ 409 (2138)
|.-|+.+++... + +.+...+..+.|..++...+.. +..
T Consensus 160 Aalai~Kly~~~-------------------------------------p----elv~~~~~~~~L~~LL~D~dp~-Vv~ 197 (746)
T PTZ00429 160 AAMGLGKLFHDD-------------------------------------M----QLFYQQDFKKDLVELLNDNNPV-VAS 197 (746)
T ss_pred HHHHHHHHHhhC-------------------------------------c----ccccccchHHHHHHHhcCCCcc-HHH
Confidence 777777765211 1 1122334456677777776654 788
Q ss_pred HHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchh
Q 000124 410 RVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQ 489 (2138)
Q Consensus 410 ~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~ 489 (2138)
.|+.+|..+...... ..-...+.+..++..+..-++-.|......|....-. .... ....+..+...+++.|+.
T Consensus 198 nAl~aL~eI~~~~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~---~~~e--~~~il~~l~~~Lq~~N~A 271 (746)
T PTZ00429 198 NAAAIVCEVNDYGSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS---DKES--AETLLTRVLPRMSHQNPA 271 (746)
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC---CcHH--HHHHHHHHHHHhcCCCHH
Confidence 888888888543211 1111233345566666666777788888777553222 1111 124567778888899999
Q ss_pred hHHHHHHHHHHHhhcCc-hhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccc
Q 000124 490 HQEYAVQLIAILTEQVD-DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK 568 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~-e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk 568 (2138)
|...|+.++.++....+ +....+. ....++|+.+ .++++++|-.+...+..+.... ...+.. -+..+....
T Consensus 272 VVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~---P~lf~~--~~~~Ff~~~- 343 (746)
T PTZ00429 272 VVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIF---PNLLRT--NLDSFYVRY- 343 (746)
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC---HHHHHH--HHHhhhccc-
Confidence 99999999999986322 2111111 1123666766 4568899998888777776532 223322 133333333
Q ss_pred cCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhc
Q 000124 569 SGGPKGQDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN 647 (2138)
Q Consensus 569 S~~~evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLk 647 (2138)
++...++......|..+++..+ ..++..|.+.+.+.+.+....+.++++.++...+. . ...++..|+.+++
T Consensus 344 ~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~------a~~cV~~Ll~ll~ 415 (746)
T PTZ00429 344 SDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--V------APDCANLLLQIVD 415 (746)
T ss_pred CCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--H------HHHHHHHHHHHhc
Confidence 3344689999999999986654 34678888888888888999999999998743221 1 2236888999997
Q ss_pred CCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh---ccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcC
Q 000124 648 SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL---TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEG 724 (2138)
Q Consensus 648 s~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL---~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G 724 (2138)
.+.+ ....++.++.+|....|+. ..+..|+..+ .-.++..|....|.|+..+...+. ...
T Consensus 416 ~~~~-~v~e~i~vik~IlrkyP~~-------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---------a~~ 478 (746)
T PTZ00429 416 RRPE-LLPQVVTAAKDIVRKYPEL-------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---------GKD 478 (746)
T ss_pred CCch-hHHHHHHHHHHHHHHCccH-------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---------HHH
Confidence 6544 4445788899997754432 1344555433 225677888889999998752211 112
Q ss_pred ChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHH-h-CCCHHHHHHHHHHH
Q 000124 725 DVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVL-A-EGTSEGKKNASRAL 789 (2138)
Q Consensus 725 ~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL-~-~~~~~Vr~~Aa~AL 789 (2138)
.+..+++-....+..||.+.+.+..-+.. .|...+ ..+..+...+ . +.++++|..|..-.
T Consensus 479 ~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~-----~~l~~vL~~~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 479 IIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGME-----PQLNRVLETVTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 33334443445778999988888887754 443211 1233455333 3 46889999986443
No 137
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.83 E-value=8.7e-09 Score=101.70 Aligned_cols=98 Identities=24% Similarity=0.454 Sum_probs=82.3
Q ss_pred EEEEEeccccccc--ccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Cccc
Q 000124 2012 LTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KSTL 2088 (2138)
Q Consensus 2012 l~v~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~~~ 2088 (2138)
|.|.|++|.++.. .-+..||||++.+......+|+++.++.||.|||.|.|.+... ..+.++|+|++++.++ .+.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCCCCCCcee
Confidence 5799999999943 3367899999999432556799999999999999999999875 7899999999998886 8899
Q ss_pred ceEEEEeccee-ecceecceeec
Q 000124 2089 GKVTIQIDKVV-TEGVYSGLFNL 2110 (2138)
Q Consensus 2089 g~~~~~~~~v~-~~~~~~~~~~l 2110 (2138)
|++.+++.++. .++....+|+|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999998 56666555543
No 138
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.79 E-value=5.8e-08 Score=100.50 Aligned_cols=118 Identities=27% Similarity=0.322 Sum_probs=105.9
Q ss_pred hhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 674 SLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 674 ~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
.+++.|+++.++++++++++.++..++++|++++...+ ..+..+.+.|+++.|++++.++++.++..++++|+||+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN---DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence 35678999999999999999999999999999997432 566677888999999999999999999999999999998
Q ss_pred Cc-hHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 754 DP-DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 754 ~~-e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
++ ..+..+.+.|+++.|++++.+++..+++.++++|.+|+.
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 66 456678889999999999999999999999999999873
No 139
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.79 E-value=4.6e-08 Score=101.24 Aligned_cols=117 Identities=32% Similarity=0.394 Sum_probs=109.3
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChh
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED 549 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~ 549 (2138)
+.+.|+++.+++++.+++..++..++.+|++++...++.+..+.+.|+++.++++|.++++.++..++++|++|+.+...
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 55789999999999999999999999999999997788888888999999999999999999999999999999998777
Q ss_pred HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHH
Q 000124 550 IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLI 586 (2138)
Q Consensus 550 ~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs 586 (2138)
.+..+.+.|.++.|++++.+.+.++++.++++|.+++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 8888888999999999999999999999999999986
No 140
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.79 E-value=5.2e-05 Score=96.33 Aligned_cols=605 Identities=13% Similarity=0.110 Sum_probs=315.2
Q ss_pred cCcHHHHHHHHhc----C-CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCC
Q 000124 83 AQAMPLFISILRS----G-TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGL 157 (2138)
Q Consensus 83 aGgVp~LV~LLks----~-~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~ 157 (2138)
+-|||.|+.+|++ . +.+.|.-+.++...++.-......-...+.+..+-+.|.+++..+|..++.+|..|+...
T Consensus 506 algip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa- 584 (1172)
T KOG0213|consen 506 ALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA- 584 (1172)
T ss_pred HhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc-
Confidence 4467777777754 2 445555566665554321110000011122334445556678889999999999988642
Q ss_pred CCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHH
Q 000124 158 SDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAA 237 (2138)
Q Consensus 158 nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~ 237 (2138)
.+-+.+.|-. ++..||+=...+. ++. ...-+.+++.||..-+..-......-.+-.+..=..+++++.+...+
T Consensus 585 --~Pygie~fDs--VlkpLwkgir~hr--gk~-laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivL 657 (1172)
T KOG0213|consen 585 --TPYGIEQFDS--VLKPLWKGIRQHR--GKE-LAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVL 657 (1172)
T ss_pred --CCcchHHHHH--HHHHHHHHHHHcc--ChH-HHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHH
Confidence 2233444433 6677777666544 222 33556677777766554333333222345555666678889999999
Q ss_pred HHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHH-----HHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC
Q 000124 238 SLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA-----DALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2138)
Q Consensus 238 ~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa-----~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s 312 (2138)
..+.+.|.. ...-........++.+...+-. ++.|. ..+...+. +..+.+--...+..++.-+.+
T Consensus 658 KVv~qcc~t-~Gv~~~y~r~dilp~ff~~fw~------rrmA~drr~ykqlv~ttv---~ia~KvG~~~~v~R~v~~lkd 727 (1172)
T KOG0213|consen 658 KVVKQCCAT-DGVEPAYIRFDILPEFFFSFWG------RRMALDRRNYKQLVDTTV---EIAAKVGSDPIVSRVVLDLKD 727 (1172)
T ss_pred HHHHHHhcc-cCCCHHHHhhhhhHHHHhhhhh------hhhhccccchhhHHHHHH---HHHHHhCchHHHHHHhhhhcc
Confidence 999988832 2222444555667777665531 11111 00111111 011111111222333333333
Q ss_pred CchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCc-hhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhH
Q 000124 313 PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL-AAPVADIIGALAYALMVFEQKSGVDDEPFDARQI 391 (2138)
Q Consensus 313 ~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~s-s~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~I 391 (2138)
.++. .+.-+.+...++.+.+.. .+. .+.....+..++|+...
T Consensus 728 e~e~---------yrkm~~etv~ri~~~lg~-----------~diderleE~lidgil~Afqe----------------- 770 (1172)
T KOG0213|consen 728 EPEQ---------YRKMVAETVSRIVGRLGA-----------ADIDERLEERLIDGILYAFQE----------------- 770 (1172)
T ss_pred ccHH---------HHHHHHHHHHHHHhcccc-----------ccccHHHHHHHHHHHHHHHHh-----------------
Confidence 3321 223334444444321111 000 11112223333333321
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhh------hchHHHHHHHHccCCHHHHHHHHHHHHHhhhcc--
Q 000124 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH------AEAKKVLIGLITMATADVREYLILSLTKLCRRE-- 463 (2138)
Q Consensus 392 e~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e------~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s-- 463 (2138)
....+.+-... ++ .+.+.+.. ...+..++..|.+.++.++++|+..+..++.--
T Consensus 771 ---------qtt~d~vml~g---fg------~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlkt 832 (1172)
T KOG0213|consen 771 ---------QTTEDSVMLLG---FG------TVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKT 832 (1172)
T ss_pred ---------cccchhhhhhh---HH------HHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 11111110000 01 11111111 012344566788899999999998888776421
Q ss_pred chhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHH
Q 000124 464 VGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL 543 (2138)
Q Consensus 464 ~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nL 543 (2138)
..--..+...|. .|...+....+++.-..+.+++.+.....-.+...--.+.+|.|.-+|++...++++++...++.+
T Consensus 833 c~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~I 910 (1172)
T KOG0213|consen 833 CGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTI 910 (1172)
T ss_pred ccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHH
Confidence 111112222222 466777788888887777777777653333333333468899999999999999999999999999
Q ss_pred hcCChh---HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000124 544 CCHSED---IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2138)
Q Consensus 544 s~~sd~---~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL~~~d~~V~~~A~~AL~~L 619 (2138)
+....+ .|+.+. .---|+++|++++.++++.+..+++.++..-- .+++..|+.=|+..+...+.-..-+++..
T Consensus 911 adrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIV 987 (1172)
T KOG0213|consen 911 ADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIV 987 (1172)
T ss_pred HhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhh
Confidence 875443 333322 12237788999999999999999999985421 22333333333332222111111112211
Q ss_pred HhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHH
Q 000124 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQS 699 (2138)
Q Consensus 620 a~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~A 699 (2138)
+. ...--..+++|..=-+.++..+|.....+|+.++..-.+....- -..+.|-|-..|.|.+..-|.-|
T Consensus 988 aE----------~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdY-iyav~PlleDAlmDrD~vhRqta 1056 (1172)
T KOG0213|consen 988 AE----------TCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDY-IYAVTPLLEDALMDRDLVHRQTA 1056 (1172)
T ss_pred hh----------hcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhH-HHHhhHHHHHhhccccHHHHHHH
Confidence 10 00011235666655566788899988888888876321111110 01233445556677788888899
Q ss_pred HHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh-------cCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHH
Q 000124 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-------TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTR 772 (2138)
Q Consensus 700 A~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~-------s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~ 772 (2138)
+.++.+++-+.+. .|....++.||+ ..++.+...-..++-.+. ..+.-...+....+
T Consensus 1057 ~~~I~Hl~Lg~~g----------~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r------~~Lg~~~~~~Y~~Q 1120 (1172)
T KOG0213|consen 1057 MNVIKHLALGVPG----------TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLR------VALGPQAMLKYCLQ 1120 (1172)
T ss_pred HHHHHHHhcCCCC----------cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHH------HHhchHHHHHHHHH
Confidence 9999999874222 344555555544 356777775555544332 11212223444555
Q ss_pred HHhCCCHHHHHHHHHHHHHh
Q 000124 773 VLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 773 LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
-|++....||+.-..+.-++
T Consensus 1121 GLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1121 GLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred hccCcHHHHHHHHHHHHHhH
Confidence 56666667776554444333
No 141
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.76 E-value=0.00085 Score=83.98 Aligned_cols=364 Identities=12% Similarity=0.094 Sum_probs=204.4
Q ss_pred chHHHHHHHHccCC-------HHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhc
Q 000124 432 EAKKVLIGLITMAT-------ADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504 (2138)
Q Consensus 432 ~gI~~LV~LL~sss-------~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~ 504 (2138)
+.++.|++|+...+ ...-..|..+|.-++... ...|.+. .+.-+-+-+++++..-|+.|+.+++..-..
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~---gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK---GDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh---hhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 56777888886532 335566666666555431 1122211 333344456788888999999999988764
Q ss_pred CchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccc---cCChhHHHHHHHH
Q 000124 505 VDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK---SGGPKGQDASAMA 581 (2138)
Q Consensus 505 s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLk---S~~~evq~~Aa~A 581 (2138)
..+....-+-..++|.+...+.+..--++..++|+++.++. .....+...|.++..+..+- .+.|...-++.|.
T Consensus 397 p~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad---~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~ 473 (858)
T COG5215 397 PCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIAD---HVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWR 473 (858)
T ss_pred ccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHH---HHHHhcCccccccHHHHHHHhhhhccchHHhhhHHH
Confidence 33333333345678888888877777789999999999975 33344444566666553222 2457778889999
Q ss_pred HHHHHHhhc--------------hhhHHHHHHHhc--CCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHh
Q 000124 582 LTKLIRAAD--------------SATINQLLALLL--GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV 645 (2138)
Q Consensus 582 L~nLs~~~e--------------~~aI~~Li~LL~--~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~L 645 (2138)
..|+..+-. ..++..|++-.. .++.+.+.....+|+.|....++ .+ .+.+..+
T Consensus 474 ~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d--~V---------~~~~a~~ 542 (858)
T COG5215 474 KENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD--AV---------SDILAGF 542 (858)
T ss_pred HHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch--hH---------HHHHHHH
Confidence 999986611 012222222211 22233344444444443221111 10 1111111
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCC
Q 000124 646 LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGD 725 (2138)
Q Consensus 646 Lks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~ 725 (2138)
..- ...-.+.+..++.++-.. +.+ + ..++++.+-...|..+.+..+. ..+. .....
T Consensus 543 ~~~-~~~kl~~~isv~~q~l~~--eD~--------------~---~~~elqSN~~~vl~aiir~~~~--~ie~--v~D~l 598 (858)
T COG5215 543 YDY-TSKKLDECISVLGQILAT--EDQ--------------L---LVEELQSNYIGVLEAIIRTRRR--DIED--VEDQL 598 (858)
T ss_pred HHH-HHHHHHHHHHHhhhhhhh--HHH--------------H---HHHHHHHHHHHHHHHHHHhcCC--Cccc--HHHHH
Confidence 100 000011122222222110 000 0 0234555555566665552222 1111 11124
Q ss_pred hhhHHhhhhcCC-HHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhh
Q 000124 726 VKPLIKLAKTSS-IDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKG 804 (2138)
Q Consensus 726 V~~Lv~LL~s~s-~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~ 804 (2138)
+..++.+|.+.+ .-+......++.+|+.+=+-+=+--.+..+|.+.+-|+..+..+...|+..++.|+..- +.++.
T Consensus 599 m~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl--~~df~- 675 (858)
T COG5215 599 MELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL--GTDFN- 675 (858)
T ss_pred HHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh--hhhHH-
Confidence 555677777753 44455677788888765444444445678899999888888999999999999998742 22222
Q ss_pred hhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 805 NAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 805 ~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
+-+.-....|++.+++...+...+-..+...+.++.
T Consensus 676 -~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAl 711 (858)
T COG5215 676 -IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIAL 711 (858)
T ss_pred -HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHH
Confidence 223556788999999887788888888888887774
No 142
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.2e-06 Score=112.64 Aligned_cols=262 Identities=17% Similarity=0.173 Sum_probs=197.1
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hcHHHHH-HHhhhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHhc
Q 000124 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAK-AKKEARL-LIGSHAQAMPLFISILRSG-TPLAKVNVAATLSVLC 112 (2138)
Q Consensus 36 ~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~-~~d~ak~-lI~~~aGgVp~LV~LLks~-~~evr~~Aa~~L~~Ls 112 (2138)
+.-+++.++++.|+..+ ++..+.+++..|+.+.. .+++.-. .-. .-.||.|+.+|+.+ +.+++..||++|..||
T Consensus 164 sasSk~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv--~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ 240 (1051)
T KOG0168|consen 164 SASSKAKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPV--KSLVPVLVALLSHEHNFDIMLLACRALTYLC 240 (1051)
T ss_pred cchHHHHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 34468888998887654 55556777777776543 2322222 222 24799999999975 7999999999999998
Q ss_pred cC-chhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhH
Q 000124 113 KD-EDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVV 190 (2138)
Q Consensus 113 ~~-e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V 190 (2138)
.. +.+...+++.++||.|+.=|-. +=.++-++++.+|..|++. + -+.+.++|++...+..++--+ -.+
T Consensus 241 evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~----H---~~AiL~AG~l~a~LsylDFFS---i~a 310 (1051)
T KOG0168|consen 241 EVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR----H---PKAILQAGALSAVLSYLDFFS---IHA 310 (1051)
T ss_pred hhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh----c---cHHHHhcccHHHHHHHHHHHH---HHH
Confidence 54 7888889999999999955544 7788999999999999972 2 358899999999998887544 347
Q ss_pred HHHHHHHHHHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh---cCCCcchhhccchHHHHHHH
Q 000124 191 QGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA---FGDSIPTVIDSGAVKALVQL 266 (2138)
Q Consensus 191 ~e~Al~aL~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~---~~e~r~~l~~~GaL~~LL~L 266 (2138)
+..|+.+-.|+|..- ..-...+.+ .+|.|..+|...+..+.+.++-++.+++.. .++.-+.+...|.+....++
T Consensus 311 QR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qL 388 (1051)
T KOG0168|consen 311 QRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQL 388 (1051)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHH
Confidence 889999999999873 222244544 799999999999999999999999999853 33444556678888888888
Q ss_pred hccC---CCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC
Q 000124 267 VGQN---NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2138)
Q Consensus 267 L~s~---sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s 312 (2138)
+.-. -+..+.......+..+++.++..+..+++.+....|..++..
T Consensus 389 lsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 389 LSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 8521 123445556677778888888889888888888888887754
No 143
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.68 E-value=9.8e-05 Score=93.92 Aligned_cols=272 Identities=12% Similarity=0.127 Sum_probs=179.7
Q ss_pred CchHHHHHhhhCCHHHHHHHHHHHHHHhcCC--hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh-----
Q 000124 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHS--EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA----- 589 (2138)
Q Consensus 517 aIp~LV~LLks~d~~vre~Aa~aL~nLs~~s--d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~----- 589 (2138)
.+...++.|++.++++|.+|+..++.++.-- ..-.+.+...|. .|.+-+....|++.-....++..+.+..
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 3455677899999999999999999886411 111122222332 3557778888999888888887776652
Q ss_pred ---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 590 ---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 590 ---e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
-.+.+|.|...|+...+.|++.....++.++...+.--..++.++ .--.|+.+|++.+.++|.+|...+..|+.
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 357889999999999999999988888887754433222222211 12347888888999999999999998876
Q ss_pred cChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHH
Q 000124 667 MRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVA 746 (2138)
Q Consensus 667 ~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ 746 (2138)
. +--++++..|+.=|+...-..|....-|++-.+..... ..+++.|++=-..+...||+-.+.
T Consensus 955 a-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p----------FtVLPalmneYrtPe~nVQnGVLk 1017 (1172)
T KOG0213|consen 955 A-------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP----------FTVLPALMNEYRTPEANVQNGVLK 1017 (1172)
T ss_pred h-------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc----------hhhhHHHHhhccCchhHHHHhHHH
Confidence 2 11223444444444444444455445555544431111 125667776667788999999999
Q ss_pred HHHHhhCCch--HHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhh
Q 000124 747 ALANLLSDPD--IAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSL 819 (2138)
Q Consensus 747 ALaNLa~~~e--~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL 819 (2138)
+|+.+...-. .+..+-. ..|.|...|.+.+.--|+.|+.++.+|+-+.+ ...|..+.-+|++++
T Consensus 1018 alsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~-------g~g~eda~iHLLN~i 1083 (1172)
T KOG0213|consen 1018 ALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVP-------GTGCEDALIHLLNLI 1083 (1172)
T ss_pred HHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCC-------CcCcHHHHHHHHHHh
Confidence 9999975322 2233332 66777888889999999999999999988642 122334455555555
No 144
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.0011 Score=86.04 Aligned_cols=499 Identities=15% Similarity=0.119 Sum_probs=288.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccC-CCHhHHHHHHHHHHHHhhcCHHHHHH
Q 000124 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN-NDISVRASAADALEALSSKSIKAKKA 296 (2138)
Q Consensus 218 I~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~-sd~~vr~~Aa~aL~nLs~~s~e~Rk~ 296 (2138)
++.|.. .-++++.++..|-.-|-+++..+- .+++..|.+.|.+. +....|..|-..|.|-....+..++.
T Consensus 4 ~~~le~-tlSpD~n~~~~Ae~~l~~~~~~nf--------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 4 LELLEK-TLSPDQNVRKRAEKQLEQAQSQNF--------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHHHHH-HcCCCcchHHHHHHHHHHHHhccH--------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 444444 445567888888777777763221 23566666667533 45567777777777754432333332
Q ss_pred HHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhh
Q 000124 297 VVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFE 376 (2138)
Q Consensus 297 i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~ 376 (2138)
-+. +.=+. + + .+ .-+.++.++..+|... .++.....+..++.++...
T Consensus 75 ~~~----qRWl~-l--~-~e-----~reqVK~~il~tL~~~----------------ep~~~s~Aaq~va~IA~~E---- 121 (859)
T KOG1241|consen 75 QYQ----QRWLQ-L--P-AE-----IREQVKNNILRTLGSP----------------EPRRPSSAAQCVAAIACIE---- 121 (859)
T ss_pred HHH----HHHHc-C--C-HH-----HHHHHHHHHHHHcCCC----------------CCCccchHHHHHHHHHHhh----
Confidence 220 11110 0 0 00 0011333333332110 1222223344455554332
Q ss_pred cCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhh-chHHHHHHHHc--cCCHHHHHHHH
Q 000124 377 QKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHA-EAKKVLIGLIT--MATADVREYLI 453 (2138)
Q Consensus 377 q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~-~gI~~LV~LL~--sss~evq~~Aa 453 (2138)
-|..... +....|+..........+|+.++.++|-+|.+-+-....... +.+..++.-.+ .++..+|..|.
T Consensus 122 -lP~n~wp-----~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~ 195 (859)
T KOG1241|consen 122 -LPQNQWP-----ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAAL 195 (859)
T ss_pred -CchhhCH-----HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHH
Confidence 1211111 333555555555444458999999999998775433222222 33444444333 35678888888
Q ss_pred HHHHHhhh------ccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh
Q 000124 454 LSLTKLCR------REVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527 (2138)
Q Consensus 454 ~aL~~Ls~------~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks 527 (2138)
.+|.+--. +++..+..| ++...+.-.+++.+++..|..+|..+..-..+....-+....++.-+..+++
T Consensus 196 ~aL~nsLef~~~nF~~E~ern~i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks 270 (859)
T KOG1241|consen 196 NALYNSLEFTKANFNNEMERNYI-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS 270 (859)
T ss_pred HHHHHHHHHHHHhhccHhhhcee-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88875322 111222222 3445556678899999999999999987544444443444455556667888
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCC-hhHHHHHHHHHHHHHHhhchhhHHHHHHHhcC---
Q 000124 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKLIRAADSATINQLLALLLG--- 603 (2138)
Q Consensus 528 ~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~-~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~--- 603 (2138)
.++++.-++.+.=++++. +++.-.+.-.+.+ ..+. |...+.+..++. ..+|.|+++|..
T Consensus 271 ~~deValQaiEFWstice--EEiD~~~e~~e~~-------d~~~~p~~~~fa~~a~~--------~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 271 DNDEVALQAIEFWSTICE--EEIDLAIEYGEAV-------DQGLPPSSKYFARQALQ--------DVVPVLLELLTKQDE 333 (859)
T ss_pred CcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh-------hcCCCchhhHHHHHHHh--------HhhHHHHHHHHhCCC
Confidence 999999999998888875 3332222111111 1111 233445555543 456888888863
Q ss_pred ----CCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC
Q 000124 604 ----DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE 679 (2138)
Q Consensus 604 ----~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~G 679 (2138)
++.+....+.-||..++....+ +.+. -.++.+-+-++++++.-|+.|+-++..+..+....+..-.-.+
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~~~~D-~Iv~------~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~q 406 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQCVGD-DIVP------HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQ 406 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHHHhcc-cchh------hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence 1223455566677766544322 1222 1344444466788999999999999999987777777777788
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC-----
Q 000124 680 IVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD----- 754 (2138)
Q Consensus 680 aV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~----- 754 (2138)
+++.++.++.|.+-.++..++|++++++...++ ..-........++.|+.-|++ .+.+..++++++.+|+..
T Consensus 407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e--~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE--AIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAA 483 (859)
T ss_pred hhHHHHHHhcCchhhhcchHHHHHHHHHhhchh--hcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999986554 222223334455566666654 578889999999999731
Q ss_pred chH-HHHHHhcCcHHHHHH-HH---h--CC-CHHHHHHHHHHHHHhhhcCC
Q 000124 755 PDI-AAEVLLEDVVSALTR-VL---A--EG-TSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 755 ~e~-r~~Ii~~g~L~~LV~-LL---~--~~-~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
+.+ ...... ...+.++. ++ . ++ ....|..|-.+|..|..+.+
T Consensus 484 ~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 484 VSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred cCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 111 001111 23333443 22 2 22 34689999999999998765
No 145
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=0.00044 Score=90.20 Aligned_cols=617 Identities=13% Similarity=0.106 Sum_probs=330.3
Q ss_pred CcHHHHHHhhCCCC-------CCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC----------C---H
Q 000124 171 GVVPTLWDQLNPKN-------KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD----------N---A 230 (2138)
Q Consensus 171 G~Ip~Ll~LL~s~s-------~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~----------s---~ 230 (2138)
-|-|.|++.+.-.. ++...+...|...-..-|.++.-+.+.++..||++.|...++.- + .
T Consensus 1375 AGYPMLi~tiT~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav 1454 (2235)
T KOG1789|consen 1375 AGYPMLIKTITLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAV 1454 (2235)
T ss_pred CcchhhhhhhhhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchh
Confidence 47788887664221 12213444555555555555556678899999999999887651 1 2
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhhc-cchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHh
Q 000124 231 AAQSNAASLLARLMLAFGDSIPTVID-SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGA 309 (2138)
Q Consensus 231 evq~~A~~aL~nLs~~~~e~r~~l~~-~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~L 309 (2138)
.+..+.++++...+ ..+++++.+.+ ...+.-++++++-++-+.+...+..++..++.+ ...+..+.++|.+=.|+-.
T Consensus 1455 ~vc~~v~~c~SVaa-QFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd-~~LQ~~LfqAG~LWYlLp~ 1532 (2235)
T KOG1789|consen 1455 RVCIHVCDCFSVAA-QFEACRQRLMEMPSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVD-TLLQFQLFQAGVLWYLLPH 1532 (2235)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHhccccHHHHHHHHHHHHHhhh-HHHHHHHHHhhhHHHHHHH
Confidence 34556666666555 33444555554 357778888887555566777788888888885 7888888999999999888
Q ss_pred hcCCc-----------hhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHH--H-----
Q 000124 310 IVAPS-----------KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAY--A----- 371 (2138)
Q Consensus 310 L~s~s-----------~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~--~----- 371 (2138)
+..-+ .+..+....+.+...+..||+++.|-.... +.+.....+.+.+.++.+ .
T Consensus 1533 Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE--------~~TP~N~T~~~sL~alLTPyiAr~Lk 1604 (2235)
T KOG1789|consen 1533 LFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADE--------ENTPDNDTVQASLRALLTPYIARCLK 1604 (2235)
T ss_pred HhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhcccccc--------ccCCCChhHHHHHHHhccHHHHHHHH
Confidence 85422 111122223334455667777766522110 011112223333333321 0
Q ss_pred ----HHHhhc--CCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHH-H---HhhcC----chhHHH----------
Q 000124 372 ----LMVFEQ--KSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAM-A---SLYGN----IFLSQW---------- 427 (2138)
Q Consensus 372 ----l~~l~q--~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL-~---~L~~n----~~~~~~---------- 427 (2138)
.+.++. .+-.....+=+.+.-.-|..+++. ++++++- + ..++. +...+.
T Consensus 1605 ~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~-------Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirV 1677 (2235)
T KOG1789|consen 1605 LETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVER-------QRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRV 1677 (2235)
T ss_pred HHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHH-------HHhccCCCCCchhhccceeeehhhccceeeeeEEEEe
Confidence 000000 000000111111111111111111 1111100 0 00000 000000
Q ss_pred --------Hhhhch-HHHHHHHHcc----------------------------------CCHHHHHHHHHHHHHhhhccc
Q 000124 428 --------VSHAEA-KKVLIGLITM----------------------------------ATADVREYLILSLTKLCRREV 464 (2138)
Q Consensus 428 --------L~e~~g-I~~LV~LL~s----------------------------------ss~evq~~Aa~aL~~Ls~~s~ 464 (2138)
+.+... -..|++.+.+ ..++-.+-+..+|.|+...++
T Consensus 1678 YNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nP 1757 (2235)
T KOG1789|consen 1678 YNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANP 1757 (2235)
T ss_pred ecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCc
Confidence 000000 0112221111 012233456688999888777
Q ss_pred hhhHHhhh----chhHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHH
Q 000124 465 GIWEAIGK----REGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHV 539 (2138)
Q Consensus 465 ~~~~~I~e----~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~a 539 (2138)
+....... -|..+.++.++.+ ++++++.-|+..+..++. +.+.-..+...|.+..|+.+|.+ -|..|+.+..+
T Consensus 1758 dlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~v 1835 (2235)
T KOG1789|consen 1758 DLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDV 1835 (2235)
T ss_pred chhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHH
Confidence 65543322 2455677777764 567899999999888776 56666677788888888888866 56778899999
Q ss_pred HHHHhcCChhHHHHHHHcCCcchhhhc-cccCChhHHHHHHHHHHHHHHhhchh--hH--------HHHHHHhcCCCcch
Q 000124 540 LWILCCHSEDIRACVESAGAVPAFLWL-LKSGGPKGQDASAMALTKLIRAADSA--TI--------NQLLALLLGDSPSS 608 (2138)
Q Consensus 540 L~nLs~~sd~~r~~I~e~GaI~aLv~L-LkS~~~evq~~Aa~AL~nLs~~~e~~--aI--------~~Li~LL~~~d~~V 608 (2138)
|..|+...+-.++. .+.|++.-+..+ +.+..+..+..++..|+.+..++-.| +- ..++..++++.
T Consensus 1836 LYAL~S~~~i~keA-~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P--- 1911 (2235)
T KOG1789|consen 1836 LYALSSNGQIGKEA-LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP--- 1911 (2235)
T ss_pred HHHHhcCcHHHHHH-HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH---
Confidence 99999866555555 457777777654 45667889999999999998764211 11 22333333331
Q ss_pred HHHHHHHHHHHHhhhcchHHHHhhhc---ccchhhHHHH-hhcC--C----CHHHHHHHHHHHHH----HhhcChhhhhh
Q 000124 609 KAHVIKVLGHVLTMALQEDLVQKGSA---ANKGLRSLVQ-VLNS--S----NEENQEYAASVLAD----LFSMRQDICGS 674 (2138)
Q Consensus 609 ~~~A~~AL~~La~~~~~~d~v~~~l~---~~GaI~aLV~-LLks--~----s~evre~Aa~ALan----L~s~~~e~r~~ 674 (2138)
+.+.+++-. -...++.+....- -.+.+..++. +.+. + ++++-|..+. ... +..+..-.|.-
T Consensus 1912 -EAaVH~fE~---T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg-~~Ea~~E~aVGG~~~R~F 1986 (2235)
T KOG1789|consen 1912 -EAAVHMFES---TSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG-TSEADKECAVGGSINREF 1986 (2235)
T ss_pred -HHHHHHHhc---cCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc-hhhhccCcccchhhhHHH
Confidence 122222110 0111111110000 0111222221 1110 0 1112221111 000 00000111122
Q ss_pred hhhC------------CCHHHHHHHhccCCHHH--HHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHH
Q 000124 675 LATD------------EIVNPCMRLLTSNTQMV--ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2138)
Q Consensus 675 Ive~------------GaV~~Lv~LL~dgs~~V--k~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~V 740 (2138)
+.+. +.+..++.++...+++. -.--..|+-.|.+..| ...+.+-.-|.++.++..+...+...
T Consensus 1987 i~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP---~LADqip~LGylPK~~~Am~~~n~s~ 2063 (2235)
T KOG1789|consen 1987 VVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHP---NLADQLPSLGYLPKFCTAMCLQNTSA 2063 (2235)
T ss_pred hhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCc---chhhhCCCccchHHHHHHHHhcCCcC
Confidence 2222 33445555565544432 1122233444444333 45556667889999998887666566
Q ss_pred HHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhc
Q 000124 741 AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN 820 (2138)
Q Consensus 741 r~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~ 820 (2138)
-..|+.+|-.|+.+.-....+....++.+++..|...-.-+ --|+++|.++.... .+++.++....|.++-|+.+|+
T Consensus 2064 P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~~~-GLA~EalkR~~~r~--~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2064 PRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPSLM-GLAAEALKRLMKRN--TGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred cHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcchHH-HHHHHHHHHHHHHh--HHHHHHHHhccCcHHHHHHHhc
Confidence 67899999999998888888888888888998776553322 28899999988743 3667777777889999999997
Q ss_pred c
Q 000124 821 A 821 (2138)
Q Consensus 821 s 821 (2138)
.
T Consensus 2141 ~ 2141 (2235)
T KOG1789|consen 2141 S 2141 (2235)
T ss_pred c
Confidence 3
No 146
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00091 Score=86.62 Aligned_cols=268 Identities=17% Similarity=0.179 Sum_probs=200.7
Q ss_pred chhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhc
Q 000124 35 ESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLC 112 (2138)
Q Consensus 35 ~~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~--~~evr~~Aa~~L~~Ls 112 (2138)
+....+|..+.+.+.. ++-.++|..|++.|..+++ .+|..++ +.|+++|+..|+.. +++....++.++.++.
T Consensus 18 ~s~aETI~kLcDRves-sTL~eDRR~A~rgLKa~sr---kYR~~Vg--a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVES-STLLEDRRDAVRGLKAFSR---KYREEVG--AQGMKPLIQVLQRDYMDPEIIKYALDTLLILT 91 (970)
T ss_pred ccHHhHHHHHHHHHhh-ccchhhHHHHHHHHHHHHH---HHHHHHH--HcccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 4666778888777744 4566889999999988876 4677776 47999999999874 8899999999998886
Q ss_pred cCc-------hhH----------HHHHh-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHH-HcCcH
Q 000124 113 KDE-------DLR----------LKVLL-GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFV-TEGVV 173 (2138)
Q Consensus 113 ~~e-------~~r----------~~v~~-~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Iv-eaG~I 173 (2138)
..+ +.+ ..+.. .+-|..++..+...|..||..+.+.|.++-++ +....++.+. -.-+|
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~---r~~e~q~~ll~~P~gI 168 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSC---RPTELQDALLVSPMGI 168 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhc---CCHHHHHHHHHCchhH
Confidence 443 222 12222 37789999999888999999999999999874 3344455554 45699
Q ss_pred HHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCC----HHHHHHHHHHHHHHHhhcCC
Q 000124 174 PTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN----AAAQSNAASLLARLMLAFGD 249 (2138)
Q Consensus 174 p~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s----~evq~~A~~aL~nLs~~~~e 249 (2138)
..++.+|.+.. ..++..++-.|..|..++...++.+.=.+..+.|..++.... .-+.+-|+..|.||...+..
T Consensus 169 S~lmdlL~Dsr---E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S 245 (970)
T KOG0946|consen 169 SKLMDLLRDSR---EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS 245 (970)
T ss_pred HHHHHHHhhhh---hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc
Confidence 99999998765 358889999999999998888888877888999999997642 24789999999999999999
Q ss_pred CcchhhccchHHHHHHHhccC--CCHhH----------HHHHHHHHHHHhhc-C-----HHHHHHHHhcCCHHHHHHhhc
Q 000124 250 SIPTVIDSGAVKALVQLVGQN--NDISV----------RASAADALEALSSK-S-----IKAKKAVVAADGVPVLIGAIV 311 (2138)
Q Consensus 250 ~r~~l~~~GaL~~LL~LL~s~--sd~~v----------r~~Aa~aL~nLs~~-s-----~e~Rk~i~e~ggL~~LI~LL~ 311 (2138)
++..+.+.+.++.|.++|... .+.++ -..+..+++.+..- | ..+.+.+...++++.|+.++.
T Consensus 246 NQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~ 325 (970)
T KOG0946|consen 246 NQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILM 325 (970)
T ss_pred hhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHc
Confidence 999999999999999887521 11111 12233333333211 1 244456777899999999887
Q ss_pred CCc
Q 000124 312 APS 314 (2138)
Q Consensus 312 s~s 314 (2138)
++.
T Consensus 326 ~~~ 328 (970)
T KOG0946|consen 326 HPG 328 (970)
T ss_pred CCC
Confidence 763
No 147
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.50 E-value=1.7e-05 Score=103.30 Aligned_cols=360 Identities=16% Similarity=0.081 Sum_probs=234.7
Q ss_pred HHhcCChhHHHHHHHcCCcchhhhccccCCh--hHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHHHHHHHHH
Q 000124 542 ILCCHSEDIRACVESAGAVPAFLWLLKSGGP--KGQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKAHVIKVLG 617 (2138)
Q Consensus 542 nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~--evq~~Aa~AL~nLs~~~e--~~aI~~Li~LL~~~d~~V~~~A~~AL~ 617 (2138)
.++.+.+.....+.+.+....+..+....+. -.-......+.|++.-.. .+.-+.+.++..+..+++.......-+
T Consensus 376 y~s~~a~~ke~~i~d~~s~~aln~l~~~~~~~~~~~~~lg~~l~s~a~~~~~~sE~~qel~~la~~a~qev~~~~~~n~~ 455 (748)
T KOG4151|consen 376 YLSIDAELKELKIEDSSSSKALNGLKGDAVESYLDLHELGMKLYSEAMEEEVTSEKAQELFDLAAFAFQEVAALSPLNWG 455 (748)
T ss_pred hhccccchhhhhccccchHHHHHhhhcccccccccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccccc
Confidence 5555555555566666777777777666543 222335666777765422 245566777776655554332111111
Q ss_pred HHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHH
Q 000124 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697 (2138)
Q Consensus 618 ~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~ 697 (2138)
+. +.-..+ .....|..+......++.+....+..+ + .....+...++.|+...|+++...+++..+.
T Consensus 456 ~v-----~~~r~r-k~~~~~~~~~~~svakt~~~~~~E~~a------A-~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl 522 (748)
T KOG4151|consen 456 NV-----HMSRAR-KRLSLDEDPSCESVAKTVSWAKNEYLA------A-KEKYERAKKIKPGGYEALLRLGQQQFEEAKL 522 (748)
T ss_pred hH-----HHHHHH-HhhccCcchhhhHHHHHHHHHHHHHHh------h-hhHHhcCccccccHHHHHHHHHHHhchHHHH
Confidence 11 000011 123344455555554443333333333 2 2566678889999999999999999999999
Q ss_pred HHHHHHH-HhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHH-HHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHH
Q 000124 698 QSARALG-ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAE-TAVAALANLLS-DPDIAAEVLLEDVVSALTRVL 774 (2138)
Q Consensus 698 ~AA~ALa-nLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~-eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL 774 (2138)
.+..+|. .+.. + ..+ ...+++++.+.++........ +++.+|.||++ +...|.++.++.+++.+..++
T Consensus 523 ~~~~aL~~~i~f--~---~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~ 593 (748)
T KOG4151|consen 523 KWYHALAGKIDF--P---GER----SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELM 593 (748)
T ss_pred HHHHHHhhhcCC--C---CCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHh
Confidence 9999998 3332 2 333 245788888888776544444 79999999998 556688899999999999999
Q ss_pred hCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh-cccCCcccCCcc
Q 000124 775 AEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR-TKQGLNFTYPPW 853 (2138)
Q Consensus 775 ~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~-~~~~~~~i~~~~ 853 (2138)
.++++..|+.+.+.+.||.... ..+...+.....-.++++.+... ..+....+...+++.++. ..+.|..+.
T Consensus 594 ~ee~~~lqraa~e~~~NLl~~~---~~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~--- 666 (748)
T KOG4151|consen 594 TEENPALQRAALESIINLLWSP---LLYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITSVVENHCSRIL--- 666 (748)
T ss_pred hcccHHHHHHHHHHHHHHHhhH---HHHHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhhcchhhhhhHH---
Confidence 9999999999999999999864 33444444433334566655433 455567777777776665 334454332
Q ss_pred cccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHHHh
Q 000124 854 AALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICA 933 (2138)
Q Consensus 854 ~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~a 933 (2138)
+...|.+.++....++.+.+||+++.+..|+...- ..++..++.++.+++..+-.+.=-..
T Consensus 667 ----~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~---------------~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 667 ----ELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL---------------FEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred ----HhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH---------------HHHHHHhccchHHHHHHHHHHhhhhh
Confidence 34568999999999999999999999999966543 57888899998888888777663333
Q ss_pred cccchhhHHHHHhhcC
Q 000124 934 AKEHKKQSMDALDLSG 949 (2138)
Q Consensus 934 ~k~~~~~~~~~L~~~g 949 (2138)
.|.-+++.+..-..-|
T Consensus 728 ~~~~~~~~l~~a~~~~ 743 (748)
T KOG4151|consen 728 KREDAAPCLSAAEEYG 743 (748)
T ss_pred hhhhhhhHHHHHHHhh
Confidence 4444555444443333
No 148
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=4e-07 Score=115.42 Aligned_cols=125 Identities=16% Similarity=0.241 Sum_probs=94.8
Q ss_pred cCCceEEEEEeccccc--ccccCCCCceEEEEecCCC--CccccccccCCCCCccccceeeecCC-CCCCeEEEEEeecC
Q 000124 2007 CLPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP--PRQTKVVSHSISPEWKEGFTWAFDVP-PKGQKLHIICKSKN 2081 (2138)
Q Consensus 2007 ~~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~~p~w~~~f~~~~~~~-p~~~~l~~~~~~~~ 2081 (2138)
+-...|+|+|++|.|| .++-|.+||||++.+-.-. ++||||.++++||.|||+|.|-+..- =.+..|++.||+-|
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 3457899999999999 5543568999999984332 33699999999999999999984222 24789999999999
Q ss_pred CC-CCcccceEEEEecceeecceecceeecCCCCCCCCCc-cceEEEEEecC
Q 000124 2082 TF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSS-RTLEIEIIWSN 2131 (2138)
Q Consensus 2082 ~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~w~~ 2131 (2138)
.| +.+-+|.|.|.|+.|=..+....++.|...+-...+. +.+.+-|..-|
T Consensus 244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p 295 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLP 295 (421)
T ss_pred CcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeec
Confidence 99 7788999999999998888777788888862111111 35555555444
No 149
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.48 E-value=5.8e-06 Score=104.46 Aligned_cols=244 Identities=17% Similarity=0.076 Sum_probs=180.8
Q ss_pred chhHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHH
Q 000124 473 REGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2138)
Q Consensus 473 ~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r 551 (2138)
..+++.++..+. ..+..++..++.++..... ..++..|++.|.+.++.++..++.+|+.+..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-----------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED-----------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC-----------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc------
Confidence 346788888884 5566666655555422111 1137889999999999999999999987754
Q ss_pred HHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 552 ~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
.++.+.|+.++++.++.++..+..+++... ....+.++.+|++.++.++..+.++|+.+-
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~----~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----------- 175 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHR----HDPGPALEAALTHEDALVRAAALRALGELP----------- 175 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc----cChHHHHHHHhcCCCHHHHHHHHHHHHhhc-----------
Confidence 456778889999999999998887777642 235678999999999999999999998752
Q ss_pred hhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 000124 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTK 711 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~ 711 (2138)
....++.|...+.+.++.+|..|+.++..+.. .+++.++..+...........++..++....
T Consensus 176 ---~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~--- 238 (410)
T TIGR02270 176 ---RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG--- 238 (410)
T ss_pred ---cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHhccCccHHHHHHHHHHhCCc---
Confidence 23467788888999999999999999988754 3455677775555444444444444443311
Q ss_pred cccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHH
Q 000124 712 TKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791 (2138)
Q Consensus 712 ~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~n 791 (2138)
..++..|..+++++. ++..++.+|+.+. ....++.|+..+.+.. +++.|.+++.+
T Consensus 239 -----------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~~--~aR~A~eA~~~ 293 (410)
T TIGR02270 239 -----------PDAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREPP--WARLAGEAFSL 293 (410)
T ss_pred -----------hhHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCcH--HHHHHHHHHHH
Confidence 137888999998754 8999999999554 5678999999886543 99999999999
Q ss_pred hhhc
Q 000124 792 LLKH 795 (2138)
Q Consensus 792 L~~~ 795 (2138)
++.-
T Consensus 294 ItG~ 297 (410)
T TIGR02270 294 ITGM 297 (410)
T ss_pred hhCC
Confidence 9874
No 150
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.1e-05 Score=96.88 Aligned_cols=249 Identities=16% Similarity=0.123 Sum_probs=191.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-hhhccchhhHHhhhchhHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhHHHHHh
Q 000124 437 LIGLITMATADVREYLILSLTK-LCRREVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2138)
Q Consensus 437 LV~LL~sss~evq~~Aa~aL~~-Ls~~s~~~~~~I~e~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~ 514 (2138)
|..+-..+++..|.+++.-|+. +...+.+.-..+.-.-.+|.|+.+|+. .+.+++..|+++|.+|+..-+.....+++
T Consensus 173 L~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~ 252 (1051)
T KOG0168|consen 173 LQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVD 252 (1051)
T ss_pred HHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeec
Confidence 3334444578888888766654 455555555555556678999999975 47899999999999999988888889999
Q ss_pred cCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh--c-
Q 000124 515 AGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--D- 590 (2138)
Q Consensus 515 aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~--e- 590 (2138)
.++||.|++-|. -...++-+++..+|-.++.. . ...+.+.|++.+.+..+.--+-.+|+.|..+-.|+|..- +
T Consensus 253 ~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H-~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~ 329 (1051)
T KOG0168|consen 253 EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--H-PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDE 329 (1051)
T ss_pred ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--c-cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999997665 45789999999999999863 2 334567999999888877777789999999999999762 1
Q ss_pred ----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh-hcchHHHHhhhcccchhhHHHHhhcCC----CHHHHHHHHHHH
Q 000124 591 ----SATINQLLALLLGDSPSSKAHVIKVLGHVLTM-ALQEDLVQKGSAANKGLRSLVQVLNSS----NEENQEYAASVL 661 (2138)
Q Consensus 591 ----~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~-~~~~d~v~~~l~~~GaI~aLV~LLks~----s~evre~Aa~AL 661 (2138)
.+++|.|..+|...+...-+.++-|+..++.. ...++..+. +...|.+.-..+|+.-. +..+....++.|
T Consensus 330 f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdq-l~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml 408 (1051)
T KOG0168|consen 330 FHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQ-LCSHDLITNIQQLLSVTPTILSNGTYTGVIRML 408 (1051)
T ss_pred chHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHH-HhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence 46889999999998888888888888888754 344444443 56778888888877543 445666777888
Q ss_pred HHHhhcChhhhhhhhhCCCHHHHHHHhc
Q 000124 662 ADLFSMRQDICGSLATDEIVNPCMRLLT 689 (2138)
Q Consensus 662 anL~s~~~e~r~~Ive~GaV~~Lv~LL~ 689 (2138)
..++++.+-......+.++...|..+|.
T Consensus 409 s~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 409 SLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 8888877888888888888877777764
No 151
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.41 E-value=1.7e-05 Score=100.26 Aligned_cols=244 Identities=19% Similarity=0.117 Sum_probs=179.9
Q ss_pred CCcchhhhcc-ccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhccc
Q 000124 558 GAVPAFLWLL-KSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636 (2138)
Q Consensus 558 GaI~aLv~LL-kS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~ 636 (2138)
.+++.++..+ .++++++...++.+|... .+..++..|++.|.+.++.++..+.++|+.+ ...
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i--------------~~~ 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ---EDALDLRSVLAVLQAGPEGLCAGIQAALGWL--------------GGR 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc---CChHHHHHHHHHhcCCCHHHHHHHHHHHhcC--------------Cch
Confidence 4677777777 456677777666555322 2334589999999999998999998888753 234
Q ss_pred chhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 637 KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 637 GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
+....|+.++++.++.+|..++.++.... ....+++..+|++.++.++..|+++|+.+.. .
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--~----- 177 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR--R----- 177 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--c-----
Confidence 46788999999999999998887766622 2345789999999999999999999999864 1
Q ss_pred hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcC
Q 000124 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
..++.|...+.+.++.|+..|+.+|..+.. ..++..+..+........+..++.++.....
T Consensus 178 -------~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-- 238 (410)
T TIGR02270 178 -------LSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-- 238 (410)
T ss_pred -------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHhccCccHHHHHHHHHHhCCc--
Confidence 266778888999999999999999976642 3355666764444444444444445543321
Q ss_pred CCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChH
Q 000124 797 PVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPP 876 (2138)
Q Consensus 797 ~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~ 876 (2138)
...+..|..++++. .++..++.+|+.+. .+..++.|+..+.+..
T Consensus 239 ------------~~a~~~L~~ll~d~----~vr~~a~~AlG~lg------------------~p~av~~L~~~l~d~~-- 282 (410)
T TIGR02270 239 ------------PDAQAWLRELLQAA----ATRREALRAVGLVG------------------DVEAAPWCLEAMREPP-- 282 (410)
T ss_pred ------------hhHHHHHHHHhcCh----hhHHHHHHHHHHcC------------------CcchHHHHHHHhcCcH--
Confidence 24678888888643 26899999999877 4557888888887654
Q ss_pred HHHHHHHHHHHhhccC
Q 000124 877 LQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 877 vq~~AieiL~~L~~~~ 892 (2138)
+++.|.+++.++.+-.
T Consensus 283 ~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 283 WARLAGEAFSLITGMD 298 (410)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 9999999999998754
No 152
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.39 E-value=7.6e-07 Score=95.75 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=74.8
Q ss_pred EEEEEeccccc--ccc--cCC--CCceEEEEecCC-CCc-cccccccCCC--CCccccceeeecCCCCC-----------
Q 000124 2012 LTVTIKRGNNL--KQT--MGT--TNAFCRLTIGNG-PPR-QTKVVSHSIS--PEWKEGFTWAFDVPPKG----------- 2070 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~--~~~--~~~~~~~~~~~~-~~~-~t~~~~~~~~--p~w~~~f~~~~~~~p~~----------- 2070 (2138)
|.|+|-++.|+ ... .|. .||||+..+... +.| +|.|-.+++| |.||+.|-|.|+.||..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 78999999995 332 454 999999999432 344 4999999999 99999999999998865
Q ss_pred -----------CeEEEEEeecCCC-CCcccceEEEEecceeec
Q 000124 2071 -----------QKLHIICKSKNTF-GKSTLGKVTIQIDKVVTE 2101 (2138)
Q Consensus 2071 -----------~~l~~~~~~~~~~-~k~~~g~~~~~~~~v~~~ 2101 (2138)
-+|+|.||++|.| ..+.+|.+.++|......
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 5689999999998 578999999999876543
No 153
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00026 Score=92.00 Aligned_cols=432 Identities=15% Similarity=0.133 Sum_probs=269.8
Q ss_pred HHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhH
Q 000124 397 MLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGI 476 (2138)
Q Consensus 397 ~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggI 476 (2138)
.=|++++.. +.--|+.++++++..+-.+ +..+-+.+++...++.+++.|+.+..++-...++....+ +
T Consensus 114 nDL~s~nq~-vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~ 181 (866)
T KOG1062|consen 114 NDLNSSNQY-VVGLALCALGNICSPEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----V 181 (866)
T ss_pred hhccCCCee-ehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----h
Confidence 334444443 4456666777765443222 223446678888999999999999999888877665544 5
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh---------------CCHHHHHHHHHHHH
Q 000124 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA---------------GSQKAREVAAHVLW 541 (2138)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks---------------~d~~vre~Aa~aL~ 541 (2138)
+....+|.+.+..+...++..+..++..+++.-....+ .++.|+..|+. .+|-++......|+
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr 259 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR 259 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH
Confidence 66777888888888888888888888765554333333 66677777652 26788999999999
Q ss_pred HHhcCChhHHHHHHHcCCcchhhhccc------cCChhHHHHHHHHHHHHHHhh--chhhHHHHHHHhcCCCcchHHHHH
Q 000124 542 ILCCHSEDIRACVESAGAVPAFLWLLK------SGGPKGQDASAMALTKLIRAA--DSATINQLLALLLGDSPSSKAHVI 613 (2138)
Q Consensus 542 nLs~~sd~~r~~I~e~GaI~aLv~LLk------S~~~evq~~Aa~AL~nLs~~~--e~~aI~~Li~LL~~~d~~V~~~A~ 613 (2138)
-|+.++.+..+.+.+ .|-+++. .-...+.+.++.++..+-... ..-+++.|-++|...+.+++..+.
T Consensus 260 iLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 260 ILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred HhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence 998876555444321 1222222 122456777777775553221 134678888888888888888888
Q ss_pred HHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH
Q 000124 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ 693 (2138)
Q Consensus 614 ~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~ 693 (2138)
..|..+....+. .+++ -=.++++.+++.+..+|..|...+..|.. ..+.+. .++.|+.+|...++
T Consensus 335 n~L~r~V~~d~~--avqr------Hr~tIleCL~DpD~SIkrralELs~~lvn--~~Nv~~-----mv~eLl~fL~~~d~ 399 (866)
T KOG1062|consen 335 NMLLRVVQQDPT--AVQR------HRSTILECLKDPDVSIKRRALELSYALVN--ESNVRV-----MVKELLEFLESSDE 399 (866)
T ss_pred hhHHhhhcCCcH--HHHH------HHHHHHHHhcCCcHHHHHHHHHHHHHHhc--cccHHH-----HHHHHHHHHHhccH
Confidence 887776543222 2222 13678889999999999999999998886 223322 35678899988899
Q ss_pred HHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--chHHHHHHhcCcHHHHH
Q 000124 694 MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PDIAAEVLLEDVVSALT 771 (2138)
Q Consensus 694 ~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~--~e~r~~Ii~~g~L~~LV 771 (2138)
+.|...+.-+..++..+.+ ..+. .+..+.+.+.....-|+..+...|..|..+ ++........ ....+.
T Consensus 400 ~~k~~~as~I~~laEkfaP--~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~r-Ly~a~~ 470 (866)
T KOG1062|consen 400 DFKADIASKIAELAEKFAP--DKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLR-LYLALS 470 (866)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHH-HHHHHh
Confidence 9999999888888864433 4444 456666666665555555555555555331 2221111100 000011
Q ss_pred -H-HHhCCCHHHHHHHHHHHHHhhhc--CCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCc
Q 000124 772 -R-VLAEGTSEGKKNASRALHQLLKH--FPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLN 847 (2138)
Q Consensus 772 -~-LL~~~~~~Vr~~Aa~AL~nL~~~--~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~ 847 (2138)
. ++....+.+.+-|.||++.-+.- .+.++.-........++..|.+++.....+..++..|+-||..|..--..+
T Consensus 471 ~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~- 549 (866)
T KOG1062|consen 471 EDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS- 549 (866)
T ss_pred hhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-
Confidence 1 12233456688999999876621 111111111222356778888888877777788889999888887421111
Q ss_pred ccCCcccccccCCCchHHHH-HhhhcCChHHHHHHHHH
Q 000124 848 FTYPPWAALAEVPSSIEPLV-CCLAEGPPPLQDKAIEI 884 (2138)
Q Consensus 848 ~i~~~~~~~~~~~~~L~~Lv-~ll~~~~~~vq~~Aiei 884 (2138)
.+ -+..|+ ....+.+..+|++|++-
T Consensus 550 -----------~~-ri~~lI~~~~~s~~~elQQRa~E~ 575 (866)
T KOG1062|consen 550 -----------SE-RIKQLISSYKSSLDTELQQRAVEY 575 (866)
T ss_pred -----------HH-HHHHHHHHhcccccHHHHHHHHHH
Confidence 11 133333 34445666799999874
No 154
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.39 E-value=5.7e-07 Score=119.41 Aligned_cols=117 Identities=25% Similarity=0.371 Sum_probs=100.5
Q ss_pred ceEEEEEeccccc--ccccCCCCceEEEEecCCC-CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CC
Q 000124 2010 GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP-PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GK 2085 (2138)
Q Consensus 2010 g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k 2085 (2138)
|-|.|.++.|+|| -+.+|..||||++.+ ||+ -.||||+||++||.|||+|+-.+..- ..|-+.|-|.|-+.. ..
T Consensus 1040 G~l~I~~~~~~nl~~~d~ng~sDpfv~~~l-n~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~~~kn 1117 (1227)
T COG5038 1040 GYLTIMLRSGENLPSSDENGYSDPFVKLFL-NEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDSGEKN 1117 (1227)
T ss_pred CcEEEEEeccCCCcccccCCCCCceEEEEe-cceecccccchhccCCCCccccceEeeecc-ccceEEEEEeecccCCCc
Confidence 7899999999999 778888999999999 887 56899999999999999999998866 899999999998776 45
Q ss_pred cccceEEEEecceeecceecceeecCCCC--CCCCCccceEEEEEecCCC
Q 000124 2086 STLGKVTIQIDKVVTEGVYSGLFNLNHDN--NKDSSSRTLEIEIIWSNRI 2133 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~w~~~~ 2133 (2138)
+.+|++.|.|..+-.+|.+|..-.|++-. +.+|. ++..|.-++
T Consensus 1118 d~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~-----~~~~~~~r~ 1162 (1227)
T COG5038 1118 DLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGT-----LHPGFNFRS 1162 (1227)
T ss_pred cccccccccHhhcCcCCccceeeeccCcceEecccE-----eecceecch
Confidence 78999999999999999999999998874 33333 556665543
No 155
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.2e-05 Score=97.24 Aligned_cols=188 Identities=16% Similarity=0.143 Sum_probs=156.9
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CchhHHHHHhcCChH
Q 000124 50 ANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIP 128 (2138)
Q Consensus 50 ~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~-~e~~r~~v~~~G~Ip 128 (2138)
..+.+.++++.|+..|..++..-|++..++. -||.+.++..+++.+..+|..|+.+|+.... ++.+++.+.+.|+.+
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 4577889999999999999999989988885 4888888889999999999999999988875 578999999999999
Q ss_pred HHHHhhccC-CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCc
Q 000124 129 PLLSLLKSE-STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDG 207 (2138)
Q Consensus 129 ~Lv~LL~se-d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~ 207 (2138)
.|+..|.++ +..+|..|+.++..+-.+ ...|...|...++...|...+.+++ .+..++..++..+..+...+..
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn----~~~g~~~fl~~~G~~~L~~vl~~~~-~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRN----NKPGQDEFLKLNGYQVLRDVLQSNN-TSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhc----CcHHHHHHHhcCCHHHHHHHHHcCC-cchHHHHHHHHHHHHHHHhhhh
Confidence 999999984 777889999999999983 5678899999999999999999876 4566788999999999887765
Q ss_pred hhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000124 208 YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 208 r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs 244 (2138)
....+...+-...+..+....+.++++.++.++..+.
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 5454444455555566666667788888877776655
No 156
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.35 E-value=0.00035 Score=88.49 Aligned_cols=347 Identities=16% Similarity=0.119 Sum_probs=221.8
Q ss_pred CcHHHHHHHHhc-CCHHHHHHHHHHHHHhccCchhHH-HHHhc-----CChHHHHHhhccCCHHHHHHHHHHHHHhhcCC
Q 000124 84 QAMPLFISILRS-GTPLAKVNVAATLSVLCKDEDLRL-KVLLG-----GCIPPLLSLLKSESTDTRKAAAEALYEVSSGG 156 (2138)
Q Consensus 84 GgVp~LV~LLks-~~~evr~~Aa~~L~~Ls~~e~~r~-~v~~~-----G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~ 156 (2138)
..+..++.+|+. ..+++..+.+.++..|..+...+. .+.+. +-..+++++|.++|.-+...|+..|..+..++
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 457788888875 578999999999988876654443 34432 45778889998889999999999999998754
Q ss_pred CCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC--CHHHHH
Q 000124 157 LSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQS 234 (2138)
Q Consensus 157 ~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~--s~evq~ 234 (2138)
.. ...+. ...-.+.-|.+.+..+.. ...+..++.+|..|...++-| ..+.+.+|++.|..+|+.. +-+.+.
T Consensus 133 ~~-~~~~~---~l~~~~~~l~~~l~~~~~--~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y 205 (429)
T cd00256 133 LA-KMEGS---DLDYYFNWLKEQLNNITN--NDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQY 205 (429)
T ss_pred cc-ccchh---HHHHHHHHHHHHhhccCC--cchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHH
Confidence 32 11111 111133455666654432 235667789999999988777 5666777999999999864 357889
Q ss_pred HHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCH------HHHHHHHhcCCHHHHHH
Q 000124 235 NAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSI------KAKKAVVAADGVPVLIG 308 (2138)
Q Consensus 235 ~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~------e~Rk~i~e~ggL~~LI~ 308 (2138)
.++-+++-|+...+ ....+...+.++.++.++.......+-+-+..++.|+...+. .....+++. +++.++.
T Consensus 206 ~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~l~~~l~ 283 (429)
T cd00256 206 QSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-KVLKTLQ 283 (429)
T ss_pred HHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-ChHHHHH
Confidence 99999999985433 344556678999999999866667888889999999988531 122234433 3444455
Q ss_pred hhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccch
Q 000124 309 AIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDA 388 (2138)
Q Consensus 309 LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~ 388 (2138)
.+....- .++. ..+.|..+. +.|. ..+..+
T Consensus 284 ~L~~rk~------~Ded----L~edl~~L~-----------e~L~---------~~~k~l-------------------- 313 (429)
T cd00256 284 SLEQRKY------DDED----LTDDLKFLT-----------EELK---------NSVQDL-------------------- 313 (429)
T ss_pred HHhcCCC------CcHH----HHHHHHHHH-----------HHHH---------HHHHHc--------------------
Confidence 4433110 0000 111111111 1000 000000
Q ss_pred hhHHHHHHHHcCCC--------ChhHHHHHHHHHHHHhhcCchhHHHHhhhc--hHHHHHHHHc-cCCHHHHHHHHHHHH
Q 000124 389 RQIEDILVMLLKPH--------DNKLVQERVLEAMASLYGNIFLSQWVSHAE--AKKVLIGLIT-MATADVREYLILSLT 457 (2138)
Q Consensus 389 ~~Ie~~LV~LL~s~--------~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~--gI~~LV~LL~-sss~evq~~Aa~aL~ 457 (2138)
...+++...+.... ++.-.++. ...+.+.+ .++.|+.++. +.++.+...|+.-++
T Consensus 314 tsfD~Y~~El~sg~L~WSp~H~se~FW~EN--------------~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dig 379 (429)
T cd00256 314 SSFDEYKSELRSGRLHWSPVHKSEKFWREN--------------ADRLNEKNYELLKILIHLLETSVDPIILAVACHDIG 379 (429)
T ss_pred CCHHHHHHHHhcCCccCCCCCCCchHHHHH--------------HHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHH
Confidence 01112222221111 00002221 12233333 3677888884 567888888899999
Q ss_pred HhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhh
Q 000124 458 KLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE 503 (2138)
Q Consensus 458 ~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~ 503 (2138)
.++...|..+..+.+.|+=..+++++.++|+++|..|+.++..|-.
T Consensus 380 e~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 380 EYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999877778787778888889999999999999999999988754
No 157
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.31 E-value=0.00014 Score=91.86 Aligned_cols=316 Identities=16% Similarity=0.141 Sum_probs=215.0
Q ss_pred hHHHHHHHHcCCCChhHHHHHHHHHHHHhhc-CchhHHHHhh-----hchHHHHHHHHccCCHHHHHHHHHHHHHhhhcc
Q 000124 390 QIEDILVMLLKPHDNKLVQERVLEAMASLYG-NIFLSQWVSH-----AEAKKVLIGLITMATADVREYLILSLTKLCRRE 463 (2138)
Q Consensus 390 ~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~-n~~~~~~L~e-----~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s 463 (2138)
.....++.++.....+++...++.-+..+.. ++.....+.+ .+....++.++...+..++..++..|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4456777777776666677777776776643 3443444443 245677888998888899999999999887653
Q ss_pred chhhHHhhhchhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHH
Q 000124 464 VGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVL 540 (2138)
Q Consensus 464 ~~~~~~I~e~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL 540 (2138)
..........--.+.+...+++. +...+..++.+|..|.. .++.|..+.+.++++.|+.+|+.. +...+-.++-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 32211111111234455666544 46678888899999988 588999999999999999999864 457788999999
Q ss_pred HHHhcCChhHHHHHHHcCCcchhhhccccC-ChhHHHHHHHHHHHHHHhhc----h---------hhHHHHHHHhcC---
Q 000124 541 WILCCHSEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAAD----S---------ATINQLLALLLG--- 603 (2138)
Q Consensus 541 ~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~-~~evq~~Aa~AL~nLs~~~e----~---------~aI~~Li~LL~~--- 603 (2138)
+-|+.+.+ ........+.|+.|+++++.. ...+.+-+..+|.|+..... . ..++.+++.|..
T Consensus 212 WlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 99998554 444556688999999998764 46788899999999987531 1 023444555543
Q ss_pred CCcchHHHHHHHHHHHHhh----hc-------------------c--hHHHHhh---hccc--chhhHHHHhhcC-CCHH
Q 000124 604 DSPSSKAHVIKVLGHVLTM----AL-------------------Q--EDLVQKG---SAAN--KGLRSLVQVLNS-SNEE 652 (2138)
Q Consensus 604 ~d~~V~~~A~~AL~~La~~----~~-------------------~--~d~v~~~---l~~~--GaI~aLV~LLks-~s~e 652 (2138)
.|+++.... +.|...... .+ + +.+.++- +.+. ..++.|++++.. .++.
T Consensus 291 ~DedL~edl-~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 291 DDEDLTDDL-KFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CcHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 334332211 111111100 00 1 1122111 1122 247889999954 4677
Q ss_pred HHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 653 NQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 653 vre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
+..-|+.=++.++...|..+..+.+.|+=..+++++.+.++++|.+|..|+..|..
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888998999999999999999999999988753
No 158
>PF05536 Neurochondrin: Neurochondrin
Probab=98.30 E-value=0.0018 Score=85.24 Aligned_cols=237 Identities=19% Similarity=0.192 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHH---HHHHHhhhcCcHHHHHHHHhcC-------CHHHHHHHHHH
Q 000124 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKE---ARLLIGSHAQAMPLFISILRSG-------TPLAKVNVAAT 107 (2138)
Q Consensus 38 ~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~---ak~lI~~~aGgVp~LV~LLks~-------~~evr~~Aa~~ 107 (2138)
...+.+|+..|+.+. | ..|-.++-.+.+++...+. .++.|.+ +=|.+-+-++|+++ ....+.-+..+
T Consensus 4 ~~~l~~c~~lL~~~~-D-~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 4 SASLEKCLSLLKSAD-D-TERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred hHHHHHHHHHhccCC-c-HHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 356889999998865 4 4588889889999887663 3456776 77889999999983 45678889999
Q ss_pred HHHhccCchhHHHHHhcCChHHHHHhhccCCH-HHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCC
Q 000124 108 LSVLCKDEDLRLKVLLGGCIPPLLSLLKSEST-DTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186 (2138)
Q Consensus 108 L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~-eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~e 186 (2138)
|..+|.+++....-...+.||.|++++.+.+. ++...|..+|..++. .+.|++.+++.|+++.|.+.+.+++
T Consensus 81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-----~~~G~~aLl~~g~v~~L~ei~~~~~-- 153 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-----SPEGAKALLESGAVPALCEIIPNQS-- 153 (543)
T ss_pred HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-----CcHhHHHHHhcCCHHHHHHHHHhCc--
Confidence 99999988776444445889999999988655 999999999999996 5789999999999999999998743
Q ss_pred ChhHHHHHHHHHHHHhcCCCchhHHHHHhCc----HHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCC-cchhhcc----
Q 000124 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGG----VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDS-IPTVIDS---- 257 (2138)
Q Consensus 187 d~~V~e~Al~aL~nLcs~~e~r~~aI~e~GG----I~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~-r~~l~~~---- 257 (2138)
...+.+..+|.+++......... .+.-+ ++.+...........+-..+..|..+....+.. .......
T Consensus 154 --~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 154 --FQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred --chHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 35788999999998865421100 11122 333444444444556677788888777433211 1122222
Q ss_pred chHHHHHHHhccCCCHhHHHHHHHHHHHHh
Q 000124 258 GAVKALVQLVGQNNDISVRASAADALEALS 287 (2138)
Q Consensus 258 GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs 287 (2138)
.....+..++++......|..+......+.
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 233344455554444455555544444443
No 159
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.025 Score=74.76 Aligned_cols=335 Identities=15% Similarity=0.191 Sum_probs=200.2
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK 472 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e 472 (2138)
+.+..+++......++.-++..+..+..+.++.+.+.+.+.+..|+.++.+ -+..+..+...|..++++ +...+.-.+
T Consensus 1774 ~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~ 1851 (2235)
T KOG1789|consen 1774 PLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALE 1851 (2235)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHh
Confidence 555666666656568899999888888888888888888888888888876 566788999999999988 455555567
Q ss_pred chhHHHHHHHh-cCCchhhHHHHHHHHHHHhhcC-chhHHHHHhcCCchH-HHHHhhhCCHHHHHHHHHHHHHHhcCChh
Q 000124 473 REGIQLLISLL-GLSSEQHQEYAVQLIAILTEQV-DDSKWAITAAGGIPP-LVQLLEAGSQKAREVAAHVLWILCCHSED 549 (2138)
Q Consensus 473 ~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLa~~s-~e~r~~I~~aGaIp~-LV~LLks~d~~vre~Aa~aL~nLs~~sd~ 549 (2138)
.||+.-+..++ .+.++++|..++..|.++.... ..-|-.|.--..+|. ++..++++ | +.+..++..-+.+
T Consensus 1852 hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~-P---EAaVH~fE~T~En--- 1924 (2235)
T KOG1789|consen 1852 HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDS-P---EAAVHMFESTSEN--- 1924 (2235)
T ss_pred cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcC-H---HHHHHHHhccCCC---
Confidence 88877777655 5667888999999999997631 111111111111111 12222221 1 2333332222111
Q ss_pred HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh----h-----------ch----------hhHHH--HHHHhc
Q 000124 550 IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA----A-----------DS----------ATINQ--LLALLL 602 (2138)
Q Consensus 550 ~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~----~-----------e~----------~aI~~--Li~LL~ 602 (2138)
|-|++ ++..+......+..+... . +. -.+.. +-.++.
T Consensus 1925 -----------PELiW-----n~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~ 1988 (2235)
T KOG1789|consen 1925 -----------PELIW-----NEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVV 1988 (2235)
T ss_pred -----------ccccc-----CHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhh
Confidence 11111 111111111111111110 0 00 00000 000111
Q ss_pred CCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCH--HHHHHHHHHHHHHhhcChhhhhhhhhCCC
Q 000124 603 GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNE--ENQEYAASVLADLFSMRQDICGSLATDEI 680 (2138)
Q Consensus 603 ~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~--evre~Aa~ALanL~s~~~e~r~~Ive~Ga 680 (2138)
+.... ..++..+ -.|.+..+.+++...++ ..-+.-..++..|....|.....+-..|-
T Consensus 1989 ~P~f~---------------LR~Pk~F-----L~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGy 2048 (2235)
T KOG1789|consen 1989 GPGFN---------------LRHPKLF-----LTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGY 2048 (2235)
T ss_pred CCCCc---------------ccCHHHH-----HHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccc
Confidence 11000 0011000 12245666666655433 34445556667777778888888888899
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHH
Q 000124 681 VNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIA 758 (2138)
Q Consensus 681 V~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r 758 (2138)
+|.++..+...+...-..|.+.|..|+. ++ -+...+.....+.++++.++.. .+...-|+++|-.+.. ..+.-
T Consensus 2049 lPK~~~Am~~~n~s~P~SaiRVlH~Lse--n~--~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLV 2123 (2235)
T KOG1789|consen 2049 LPKFCTAMCLQNTSAPRSAIRVLHELSE--NQ--FCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELV 2123 (2235)
T ss_pred hHHHHHHHHhcCCcCcHHHHHHHHHHhh--cc--HHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999887777777889999999986 33 5666777888888888888754 3344578888888865 34455
Q ss_pred HHHHhcCcHHHHHHHHhCC
Q 000124 759 AEVLLEDVVSALTRVLAEG 777 (2138)
Q Consensus 759 ~~Ii~~g~L~~LV~LL~~~ 777 (2138)
....+.|.+|.|.++|...
T Consensus 2124 AQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2124 AQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHhccCcHHHHHHHhccc
Confidence 6677899999999998654
No 160
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.012 Score=76.89 Aligned_cols=222 Identities=16% Similarity=0.164 Sum_probs=171.3
Q ss_pred cHHHHHHHHhcC-CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCC----
Q 000124 85 AMPLFISILRSG-TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS--ESTDTRKAAAEALYEVSSGGL---- 157 (2138)
Q Consensus 85 gVp~LV~LLks~-~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s--ed~eVr~aAa~AL~nLS~~~~---- 157 (2138)
-|+.|+.-..+. -.+-|..|++.|..+++ ..|..++ ..|.+++++.|.. .|++....++.++.++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 466666666554 46788999999998864 4555554 4667999999987 499999999999999998753
Q ss_pred ---CC--Chhh---HHH-HHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCc--hhHHHHHhCcHHHHHHhhc
Q 000124 158 ---SD--DHVG---MKI-FVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDG--YWRATLEAGGVDIIVGLLS 226 (2138)
Q Consensus 158 ---nk--d~~g---re~-IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~--r~~aI~e~GGI~~Lv~lL~ 226 (2138)
++ ++.| .+. +...+-|..|+..+...+ -.|+..++..|.++-++... +...+...-||..++.+|.
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~D---F~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFD---FHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhc---hhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 11 1111 122 345678899999887654 56899999999999777543 2233555779999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccC--CC-HhHHHHHHHHHHHHhhcCHHHHHHHHhcCCH
Q 000124 227 SDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN--ND-ISVRASAADALEALSSKSIKAKKAVVAADGV 303 (2138)
Q Consensus 227 s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~--sd-~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL 303 (2138)
...+-+|..++-.|..|..+++..++.+.=..+...|+.++... .+ .-+...+...+.||..+|..+.+.|.+.+-+
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 98889999999999999988888888887788999999999632 22 2456778888889999888999999999999
Q ss_pred HHHHHhhcC
Q 000124 304 PVLIGAIVA 312 (2138)
Q Consensus 304 ~~LI~LL~s 312 (2138)
+.|.+++..
T Consensus 257 ~rL~klL~~ 265 (970)
T KOG0946|consen 257 PRLLKLLSV 265 (970)
T ss_pred HHHHhhcCc
Confidence 999988754
No 161
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.23 E-value=0.00082 Score=84.54 Aligned_cols=272 Identities=14% Similarity=0.110 Sum_probs=176.4
Q ss_pred chHHHHHhhhCCHHHHHHHHHHHHHHhcC--ChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh-------
Q 000124 518 IPPLVQLLEAGSQKAREVAAHVLWILCCH--SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA------- 588 (2138)
Q Consensus 518 Ip~LV~LLks~d~~vre~Aa~aL~nLs~~--sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~------- 588 (2138)
+...+.+|++..+++|..|+...+.|+.- +..-.+.+...|. .|.+-+....|++.-....++..+.+.
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 44456678999999999999988888541 0000122222332 245666777888888777777766544
Q ss_pred -hchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000124 589 -ADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2138)
Q Consensus 589 -~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~ 667 (2138)
+-.+++|.|...|+...+.+.......++.++...+.--..++.++ .--.|+.+|++-+.++|.+|...+..++..
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 2367889999999998888888877777777654433222222211 123477888889999999999999888752
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHH
Q 000124 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAA 747 (2138)
Q Consensus 668 ~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~A 747 (2138)
+--++++..|+.=|+...-..|...+-|++-.+...- -..++|.|++=-..+...||+-.+.+
T Consensus 761 -------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg----------pfsVlP~lm~dY~TPe~nVQnGvLka 823 (975)
T COG5181 761 -------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG----------PFSVLPTLMSDYETPEANVQNGVLKA 823 (975)
T ss_pred -------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC----------chhhHHHHHhcccCchhHHHHhHHHH
Confidence 2223445555555555555555555555555543111 12256666666667889999999999
Q ss_pred HHHhhCCchH--HHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhc
Q 000124 748 LANLLSDPDI--AAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN 820 (2138)
Q Consensus 748 LaNLa~~~e~--r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~ 820 (2138)
++.+...-.. +..+- ...|.|...|.+.++--|+.|..++.+|.-+++.- ....+.-+|++++=
T Consensus 824 m~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-------g~eda~IHLlNllw 889 (975)
T COG5181 824 MCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-------GDEDAAIHLLNLLW 889 (975)
T ss_pred HHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-------ccHHHHHHHHHHhh
Confidence 9998753222 22232 25677777888999999999999999999875421 11234455666663
No 162
>PLN02270 phospholipase D alpha
Probab=98.23 E-value=3.2e-06 Score=111.44 Aligned_cols=122 Identities=14% Similarity=0.324 Sum_probs=99.4
Q ss_pred CCceEEEEEeccccccc---------------------ccCCCCceEEEEecCCCCccccccccC-CCCCccccceeeec
Q 000124 2008 LPGCLTVTIKRGNNLKQ---------------------TMGTTNAFCRLTIGNGPPRQTKVVSHS-ISPEWKEGFTWAFD 2065 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~p~w~~~f~~~~~ 2065 (2138)
|=|.|-|||.+|.+|.. + +.++|||-+.+++..--+|+|+++. .||+|||.|.--+.
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGK-GESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCC-CCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence 45999999999998742 2 4569999999954333379999885 69999999999888
Q ss_pred CCCCCCeEEEEEeecCCCCCcccceEEEEecceeecceecceeecCCCCCCCCCc-cceEEEEEecCC
Q 000124 2066 VPPKGQKLHIICKSKNTFGKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSS-RTLEIEIIWSNR 2132 (2138)
Q Consensus 2066 ~~p~~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~w~~~ 2132 (2138)
-+ . ..+++.||+.+.||-+-+|++.|...+++...+++++|.+.+++.|-=+. -++.+.+|..+-
T Consensus 85 h~-~-~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 85 HM-A-SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cC-c-ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 76 3 78999999999999999999999999999998999999999995442211 245577777664
No 163
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.21 E-value=0.00012 Score=90.74 Aligned_cols=250 Identities=26% Similarity=0.272 Sum_probs=185.7
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
..++.+.+.+.+.+..+|..+...++.+.. ..+++.+..+|.+.++.+|..++.+|+.+..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------
Confidence 457788899999999999999999877765 3478999999999999999999999988864
Q ss_pred HHHcCCcchhhhccc-cCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcc------------hHHHHHHHHHHHH
Q 000124 554 VESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPS------------SKAHVIKVLGHVL 620 (2138)
Q Consensus 554 I~e~GaI~aLv~LLk-S~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~------------V~~~A~~AL~~La 620 (2138)
..+++.|+.++. +++..++..++++|+.+. +...+.+++..+.++... ++..+..+++.+
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~---~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~- 176 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLG---DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL- 176 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC---chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc-
Confidence 457888898888 688999999999999886 445688899999887622 333333333332
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHH
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSA 700 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA 700 (2138)
.....+..+..++++.+..+|..|+.+|..+...+ ..+...+...+.+.+..++..++
T Consensus 177 -------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 177 -------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred -------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 33445788888888888888888888888887632 34557778888888888888888
Q ss_pred HHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHH
Q 000124 701 RALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSE 780 (2138)
Q Consensus 701 ~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~ 780 (2138)
.+|+.+.. ...+..++..+.+.+..++..+..++..+- .......+...+.+....
T Consensus 235 ~~l~~~~~--------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~ 290 (335)
T COG1413 235 LALGEIGD--------------EEAVDALAKALEDEDVILALLAAAALGALD----------LAEAALPLLLLLIDEANA 290 (335)
T ss_pred HHhcccCc--------------chhHHHHHHHHhccchHHHHHHHHHhcccC----------chhhHHHHHHHhhcchhh
Confidence 88877753 125677888888877777776666555111 123455566667777778
Q ss_pred HHHHHHHHHHHhhhc
Q 000124 781 GKKNASRALHQLLKH 795 (2138)
Q Consensus 781 Vr~~Aa~AL~nL~~~ 795 (2138)
++..+...+......
T Consensus 291 ~~~~~~~~l~~~~~~ 305 (335)
T COG1413 291 VRLEAALALGQIGQE 305 (335)
T ss_pred HHHHHHHHHHhhccc
Confidence 888888877766654
No 164
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.21 E-value=0.00019 Score=88.92 Aligned_cols=275 Identities=27% Similarity=0.290 Sum_probs=205.9
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHH
Q 000124 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2138)
Q Consensus 432 ~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~ 511 (2138)
.....++.++.+.+..++..++..+..+.. ...++.+..++.+.++.+|..++.+|+++..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------
Confidence 456778888888888888888877554432 3468899999999999999999999888875
Q ss_pred HHhcCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCC----------h--hHHHHH
Q 000124 512 ITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGG----------P--KGQDAS 578 (2138)
Q Consensus 512 I~~aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~----------~--evq~~A 578 (2138)
...++.|+.+|. +.+..+|..++.+|+.+.. ..++..++..+.+.. + .++..+
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 247899999999 5899999999999999964 334666777666644 2 467777
Q ss_pred HHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHH
Q 000124 579 AMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAA 658 (2138)
Q Consensus 579 a~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa 658 (2138)
...|+.+. +...++.+..++.+.+..++..+..+|+.+.... ......+...+.+.+..+|..++
T Consensus 170 ~~~l~~~~---~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 170 AEALGELG---DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred HHHHHHcC---ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 77777664 5678899999999999999999998888764221 13467788889999999999999
Q ss_pred HHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCH
Q 000124 659 SVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI 738 (2138)
Q Consensus 659 ~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~ 738 (2138)
.+|..+.. ...+..+...+.+.+..++..+..++...-. ......+...+.+...
T Consensus 235 ~~l~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~ 289 (335)
T COG1413 235 LALGEIGD-----------EEAVDALAKALEDEDVILALLAAAALGALDL--------------AEAALPLLLLLIDEAN 289 (335)
T ss_pred HHhcccCc-----------chhHHHHHHHHhccchHHHHHHHHHhcccCc--------------hhhHHHHHHHhhcchh
Confidence 99888765 4567889999999999888877766662211 1245677777888888
Q ss_pred HHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 739 DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 739 ~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
.++..+..++.... .......+.....+++..++..+...+
T Consensus 290 ~~~~~~~~~l~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 330 (335)
T COG1413 290 AVRLEAALALGQIG----------QEKAVAALLLALEDGDADVRKAALILL 330 (335)
T ss_pred hHHHHHHHHHHhhc----------ccchHHHHHHHhcCCchhhHHHHHHHH
Confidence 88888888887554 334444555555566666665555444
No 165
>PLN02952 phosphoinositide phospholipase C
Probab=98.17 E-value=6.8e-06 Score=106.79 Aligned_cols=117 Identities=16% Similarity=0.318 Sum_probs=87.9
Q ss_pred CceEEEEEecccccc--------cccCCCCceEEEEecCCC-----CccccccccCCCCCccccceeeecCCCCCCeEEE
Q 000124 2009 PGCLTVTIKRGNNLK--------QTMGTTNAFCRLTIGNGP-----PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHI 2075 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~--------~~~~~~~~~~~~~~~~~~-----~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~ 2075 (2138)
+..|+|+|+.|+.+. +...-.||||++.+ -|- +++||+|++|.||+|||+|+|.+..|- =..|.+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i-~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE-LAllrf 546 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYI-VGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE-LALLRI 546 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEE-eccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC-ccEEEE
Confidence 578999999999872 11112489999999 563 346999999999999999999998873 357999
Q ss_pred EEeecCCCC-CcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2076 ICKSKNTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2076 ~~~~~~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
+|+++|.++ .+.+|...|.++..-.--| ..+|-+..++.=..-.|.++|+|.
T Consensus 547 ~V~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~~~~G~~l~~a~Llv~f~~~ 599 (599)
T PLN02952 547 EVREYDMSEKDDFGGQTCLPVSELRPGIR---SVPLHDKKGEKLKNVRLLMRFIFV 599 (599)
T ss_pred EEEecCCCCCCCeEEEEEcchhHhcCCce---eEeCcCCCCCCCCCEEEEEEEEeC
Confidence 999999886 4568999999987655444 567765534332234678888874
No 166
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=3.3e-06 Score=107.21 Aligned_cols=89 Identities=22% Similarity=0.451 Sum_probs=70.6
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCCCc----cccccccCCCCCccccceeeecCCCCCC-eEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPR----QTKVVSHSISPEWKEGFTWAFDVPPKGQ-KLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~t~~~~~~~~p~w~~~f~~~~~~~p~~~-~l~~~~~~~~ 2081 (2138)
-|-|+|.|++|-|| .+.-|..||||++++..+.+| ||.+.++++||.|||+|.|-+...=+.+ -|.|+||+++
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d 376 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHD 376 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcc
Confidence 48899999999999 344356669999999888744 5999999999999999999443222233 5789999999
Q ss_pred CCCCc-ccceEEEEecc
Q 000124 2082 TFGKS-TLGKVTIQIDK 2097 (2138)
Q Consensus 2082 ~~~k~-~~g~~~~~~~~ 2097 (2138)
++|+. .+|+|.+-...
T Consensus 377 ~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 377 TLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccccceeeEEEecCCC
Confidence 99665 69988876654
No 167
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.12 E-value=4.5e-06 Score=102.14 Aligned_cols=117 Identities=27% Similarity=0.462 Sum_probs=98.6
Q ss_pred CCceEEEEEeccccc----ccccCCCCceEEEEecCCCCccccccccCCCCCccc-cceeeecCCCCC-CeEEEEEeecC
Q 000124 2008 LPGCLTVTIKRGNNL----KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKE-GFTWAFDVPPKG-QKLHIICKSKN 2081 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~-~f~~~~~~~p~~-~~l~~~~~~~~ 2081 (2138)
.||-|-|.|+.|.+| +.+ ..||+||.+.| ..-+-||.|..|++||.||- -|.|-+||.-+. +.|.|.+.+||
T Consensus 1 mpgkl~vki~a~r~lpvmdkas-d~tdafveik~-~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKAS-DLTDAFVEIKF-ANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CCCcceeEEEeccCCccccccc-ccchheeEEEe-cccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 599999999999999 334 67999999999 56677999999999999995 589999988765 46999999999
Q ss_pred CC-CCcccceEEEEecceeec----------ceecceeecCCCCCCCCCccceEEEEE
Q 000124 2082 TF-GKSTLGKVTIQIDKVVTE----------GVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2082 ~~-~k~~~g~~~~~~~~v~~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
|+ -.+-+|+|.|.|+-...+ -.|+++|++-+. -+|--+.+++-.|
T Consensus 79 tysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt--ihgirgeinvivk 134 (1169)
T KOG1031|consen 79 TYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT--IHGIRGEINVIVK 134 (1169)
T ss_pred ccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee--cccccceeEEEEE
Confidence 99 789999999999987765 358999999888 7776665555443
No 168
>PLN02223 phosphoinositide phospholipase C
Probab=98.12 E-value=8.5e-06 Score=103.90 Aligned_cols=117 Identities=21% Similarity=0.348 Sum_probs=87.2
Q ss_pred CceEEEEEecccccc-------cccCCCCceEEEEecCCCCc-----cccccccCCCCCccccceeeecCCCCCCeEEEE
Q 000124 2009 PGCLTVTIKRGNNLK-------QTMGTTNAFCRLTIGNGPPR-----QTKVVSHSISPEWKEGFTWAFDVPPKGQKLHII 2076 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~ 2076 (2138)
+..|+|+|+.|+.+- +.....||||++.+ -|-+. +|+|.+++.||.|||+|+|.+-.| -=-.|.++
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI-~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P-ELAlLrf~ 485 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISI-AGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP-DLALISFE 485 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEE-eeccCCcceeEEEeCCCCcCceecceeEEEEEcc-CceEEEEE
Confidence 678999999999761 22234689999999 66433 588889999999999999999887 55679999
Q ss_pred EeecCCCC-CcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2077 CKSKNTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2077 ~~~~~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
|+++|.++ .+.+|...|.+.-.-.-=| ..+|-+..++.=.+-+|.++|+|+
T Consensus 486 V~D~D~~~~ddfiGQ~~LPv~~Lr~GyR---~VpL~~~~g~~l~~~~Ll~~f~~~ 537 (537)
T PLN02223 486 VYDYEVSTADAFCGQTCLPVSELIEGIR---AVPLYDERGKACSSTMLLTRFKWS 537 (537)
T ss_pred EEecCCCCCCcEEEEEecchHHhcCCce---eEeccCCCcCCCCCceEEEEEEeC
Confidence 99999885 5677999999876533222 235554433332346788999995
No 169
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.08 E-value=3.4e-06 Score=86.17 Aligned_cols=84 Identities=18% Similarity=0.313 Sum_probs=68.3
Q ss_pred EEEEEeccccc--cc---ccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCc
Q 000124 2012 LTVTIKRGNNL--KQ---TMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKS 2086 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~ 2086 (2138)
|+|+|+.+-|| .+ +-+.++|||.+-.+.-++-+||+ ++||+|||+|.|.+| ++--+.+.||+|+.----
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd---k~nEiel~VyDk~~~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE---KNNEEEVIVYDKGGDQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec---CCcEEEEEEEeCCCCeec
Confidence 68999999999 34 45788999999997777668998 599999999999997 578899999999655444
Q ss_pred ccceEEEEecceeec
Q 000124 2087 TLGKVTIQIDKVVTE 2101 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~ 2101 (2138)
-+|-.=|.|+|++-+
T Consensus 75 Pi~llW~~~sdi~Ee 89 (109)
T cd08689 75 PVGLLWLRLSDIAEE 89 (109)
T ss_pred ceeeehhhHHHHHHH
Confidence 566666777776654
No 170
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0002 Score=86.96 Aligned_cols=180 Identities=17% Similarity=0.139 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCC
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~ 486 (2138)
-+..+..-|-.+..+-++...+...+|..+++..+.+++..+|..|+..++....+++..+..+.+.|+.+.|+.++.+.
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~ 178 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD 178 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence 45666666666677888889999999999999999999999999999999999999999999999999999999999755
Q ss_pred c-hhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh--CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchh
Q 000124 487 S-EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA--GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2138)
Q Consensus 487 d-~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks--~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aL 563 (2138)
+ ..+|..|+.+++.|-++.+.....+...+++..|...|++ .+...+..++..+.+|.......+..+...+....+
T Consensus 179 ~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~ 258 (342)
T KOG2160|consen 179 DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVL 258 (342)
T ss_pred CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Confidence 4 4578999999999999888888888889999999999998 478889999999999987554445555556666666
Q ss_pred hhccccCChhHHHHHHHHHHHHH
Q 000124 564 LWLLKSGGPKGQDASAMALTKLI 586 (2138)
Q Consensus 564 v~LLkS~~~evq~~Aa~AL~nLs 586 (2138)
..+..+.+.++.+.+..++..+.
T Consensus 259 ~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 259 ENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHhhccchhhhHHHHHHHHHHH
Confidence 66777777888888887776554
No 171
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=1e-05 Score=100.23 Aligned_cols=111 Identities=19% Similarity=0.443 Sum_probs=89.9
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC------
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF------ 2083 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~------ 2083 (2138)
+++||.-|+.| +++-|+.||||....+|. +|+||.+-.++||+|||.|.|-+-.. .|++.|.||+.+.-
T Consensus 297 itltvlcaqgl~akdktg~sdpyvt~qv~kt-krrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 297 ITLTVLCAQGLIAKDKTGKSDPYVTAQVGKT-KRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred eEEeeeecccceecccCCCCCCcEEEeeccc-chhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCcccHHHHHH
Confidence 67888888888 999999999999998432 34599999999999999999988765 79999999998543
Q ss_pred ------CCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEE
Q 000124 2084 ------GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEI 2127 (2138)
Q Consensus 2084 ------~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 2127 (2138)
..+.+|.-.|...- ..|+..-+|.|...+.|+..++-+.+|+
T Consensus 374 qkl~resddflgqtvievrt--lsgemdvwynlekrtdksavsgairlhi 421 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRT--LSGEMDVWYNLEKRTDKSAVSGAIRLHI 421 (1283)
T ss_pred HHhhhcccccccceeEEEEe--cccchhhhcchhhccchhhccceEEEEE
Confidence 56789998887543 3799999999998877865555544554
No 172
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=97.99 E-value=1.4e-05 Score=106.81 Aligned_cols=146 Identities=20% Similarity=0.345 Sum_probs=108.8
Q ss_pred hhhHHHHHHHh-----------CCCchhhhhhhhhhc----CCceEEEEEecccccccc----cCCCCceEEEEecCCCC
Q 000124 1982 AIPILQMLMKT-----------CPPSFHERADSLLHC----LPGCLTVTIKRGNNLKQT----MGTTNAFCRLTIGNGPP 2042 (2138)
Q Consensus 1982 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~g~l~v~v~~~~~~~~~----~~~~~~~~~~~~~~~~~ 2042 (2138)
+||-|--+++. -|-+|.=-.+.++-- ==|++-|+|.+|+++++. .|.-|||+.++|..-..
T Consensus 393 ~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~ 472 (1227)
T COG5038 393 AIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVI 472 (1227)
T ss_pred cCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccC
Confidence 67777666654 344554444444322 238999999999999544 47889999999833333
Q ss_pred ccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCC-cccceEEEEecceeecceecc-eeecCCCCCCCCCc
Q 000124 2043 RQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGK-STLGKVTIQIDKVVTEGVYSG-LFNLNHDNNKDSSS 2120 (2138)
Q Consensus 2043 ~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k-~~~g~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~ 2120 (2138)
-||||++.+.||+|||+|--++.. .+|+|-|+|||++.|.+ .-+|++.|.|.....++.... .|++.-. .|+ -
T Consensus 473 gkT~v~~nt~nPvwNEt~Yi~lns--~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~-~k~--v 547 (1227)
T COG5038 473 GKTRVKKNTLNPVWNETFYILLNS--FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN-TKN--V 547 (1227)
T ss_pred CccceeeccCCccccceEEEEecc--cCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeecc-Ccc--c
Confidence 389999999999999999888883 79999999999888755 468999999999888766655 8887655 222 2
Q ss_pred cceEEEEEecCC
Q 000124 2121 RTLEIEIIWSNR 2132 (2138)
Q Consensus 2121 ~~~~~~~~w~~~ 2132 (2138)
+.|.-+++|=|.
T Consensus 548 GrL~yDl~ffp~ 559 (1227)
T COG5038 548 GRLTYDLRFFPV 559 (1227)
T ss_pred eEEEEeeeeecc
Confidence 456688888775
No 173
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.064 Score=70.80 Aligned_cols=230 Identities=17% Similarity=0.159 Sum_probs=125.0
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHc
Q 000124 478 LLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESA 557 (2138)
Q Consensus 478 ~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~ 557 (2138)
.++++|++.|..+|+.|.+.+..|.. ..|-.. .+..|+..|.+.+++.+...+..+..++..-..-+..
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn--~~Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W---- 422 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVN--ESNVRV-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRW---- 422 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhc--cccHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh----
Confidence 45677778888888888888777775 233222 2345667777777777777777777765422111111
Q ss_pred CCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccc
Q 000124 558 GAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637 (2138)
Q Consensus 558 GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~G 637 (2138)
-+..+...++....-+ ..++++.++.++....++...++...|..-...
T Consensus 423 -~idtml~Vl~~aG~~V---------------~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~--------------- 471 (866)
T KOG1062|consen 423 -HIDTMLKVLKTAGDFV---------------NDDVVNNLLRLIANAFQELHEYAVLRLYLALSE--------------- 471 (866)
T ss_pred -HHHHHHHHHHhccccc---------------chhhHHHHHHHHhcCCcchhhHHHHHHHHHHhh---------------
Confidence 1222333332222111 234455556666555444444433333221100
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhc-----ChhhhhhhhhCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCC
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSM-----RQDICGSLATDEIVNPCMRLLTS--NTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~-----~~e~r~~Ive~GaV~~Lv~LL~d--gs~~Vk~~AA~ALanLa~s~ 710 (2138)
.- ++..+.+.....+.|++..-... +.+.-..+.+..++..+-+++.. .+..+|..|..||.+|+.-.
T Consensus 472 ----~~-~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 472 ----DT-LLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF 546 (866)
T ss_pred ----hh-hhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence 00 11223445566788887765421 11222234456778888888754 34678899999999998632
Q ss_pred CcccchhhhHHhcCChhhHHh-hhhcCCHHHHHHHHHHHHHhhCCchHHHHHHh
Q 000124 711 KTKTTNKMSYIAEGDVKPLIK-LAKTSSIDAAETAVAALANLLSDPDIAAEVLL 763 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~-LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~ 763 (2138)
+. .. .-++.|+. ...+.+.++|..|.+-=.-+..+...|+.|.+
T Consensus 547 ~s-~~--------~ri~~lI~~~~~s~~~elQQRa~E~~~l~~~~~~lr~siLe 591 (866)
T KOG1062|consen 547 HS-SS--------ERIKQLISSYKSSLDTELQQRAVEYNALFAKDKHLRKSILE 591 (866)
T ss_pred cc-cH--------HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 01 12344443 33457888888887765555555666655544
No 174
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.90 E-value=0.0086 Score=75.84 Aligned_cols=328 Identities=14% Similarity=0.103 Sum_probs=190.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhhcc--chhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHH
Q 000124 434 KKVLIGLITMATADVREYLILSLTKLCRRE--VGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2138)
Q Consensus 434 I~~LV~LL~sss~evq~~Aa~aL~~Ls~~s--~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~ 511 (2138)
+..++.++++.+++++..|+...+.++.-- ..--..+...|. .|.+-+....+++.-..+.+++.+.....-....
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 456777899999999999998777665320 111112222222 3556666777888777777777776532222222
Q ss_pred HHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChh---HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED---IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~---~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
.-..|.+|.|.-+|++...++..+....++.++..+.+ .|+.+. .---|+++|++.+.+++++|..+++.++..
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 22468999999999999999999999999999876544 333322 122367889999999999999999999854
Q ss_pred h-chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000124 589 A-DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2138)
Q Consensus 589 ~-e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~ 667 (2138)
- ..+++..|+.=|+..+...+.-..-+++..+ +...--..++.|..=-.+++..+|.....+++.++..
T Consensus 761 iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVa----------e~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 761 IGPQDVLDILLNNLKVQERQQRVCTSVAISIVA----------EYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhH----------hhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 2 1233344444343332222211111222211 0001112355555555566788999888888887752
Q ss_pred Chhh-hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh----cCCHHHHH
Q 000124 668 RQDI-CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK----TSSIDAAE 742 (2138)
Q Consensus 668 ~~e~-r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~----s~s~~Vr~ 742 (2138)
-.+. +..+ .-+.|-|-..|.|.++.-|.-|+..+.+|+-..+. ....++.-.|+++|- .+++.+..
T Consensus 831 ig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g-------tg~eda~IHLlNllwpNIle~sPhvi~ 901 (975)
T COG5181 831 IGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG-------TGDEDAAIHLLNLLWPNILEPSPHVIQ 901 (975)
T ss_pred HHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC-------cccHHHHHHHHHHhhhhccCCCcHHHH
Confidence 1111 1111 12334444566778888888899999998763221 112223344555543 35666666
Q ss_pred H---HHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 743 T---AVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 743 e---Al~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
. ++.++.+..+... ....+.+-|+..+..+|. +-|...|....
T Consensus 902 ~~~Eg~e~~~~~lg~g~---------~m~Yv~qGLFHPs~~VRk-~ywtvyn~myv 947 (975)
T COG5181 902 SFDEGMESFATVLGSGA---------MMKYVQQGLFHPSSTVRK-RYWTVYNIMYV 947 (975)
T ss_pred HHHHHHHHHHHHhccHH---------HHHHHHHhccCchHHHHH-HHHHHHhhhhh
Confidence 4 4455544332111 223444556666666664 55666666553
No 175
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.86 E-value=0.00094 Score=81.66 Aligned_cols=274 Identities=16% Similarity=0.147 Sum_probs=187.1
Q ss_pred hHHhhhchhHHHHHHHhcCCchh--hHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-CHHHHHHHHHHHHHH
Q 000124 467 WEAIGKREGIQLLISLLGLSSEQ--HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWIL 543 (2138)
Q Consensus 467 ~~~I~e~ggIp~LV~LL~s~d~~--Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-d~~vre~Aa~aL~nL 543 (2138)
+..|...||+..|++++..++.. +|..+...|-.+.. .+|+..+...| +..++.+-+.. .++..+..+++|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 34566789999999999988765 58899999988875 57788887776 55555554443 788899999999999
Q ss_pred hcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh
Q 000124 544 CCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMA 623 (2138)
Q Consensus 544 s~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~ 623 (2138)
-.|+++...-+++.|++..++-.++..+|.+.++++-+|+|+.-+.- ..
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~---------------~a---------------- 298 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGG---------------QA---------------- 298 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhch---------------hH----------------
Confidence 99998888888889999999999999999999999999999974310 11
Q ss_pred cchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHH--HHHHHHH
Q 000124 624 LQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQM--VATQSAR 701 (2138)
Q Consensus 624 ~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~--Vk~~AA~ 701 (2138)
+++.+.+..+-..|.-+..+.++-.|..|+-+.+-|+. +.+.-..+.+.|.+..+-.++.+-++. .|..
T Consensus 299 -----~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~--- 369 (832)
T KOG3678|consen 299 -----VQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT-NKEVEREVRKSGTLALVEPLVASLDPGRFARDA--- 369 (832)
T ss_pred -----HHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh-hhhhhHHHhhccchhhhhhhhhccCcchhhhhh---
Confidence 12223344456777777777788899999999999988 777777777777654443444333332 1110
Q ss_pred HHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCch--H-HHHHHhcCcHHHHHHHHhCCC
Q 000124 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD--I-AAEVLLEDVVSALTRVLAEGT 778 (2138)
Q Consensus 702 ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e--~-r~~Ii~~g~L~~LV~LL~~~~ 778 (2138)
..-+.+ ...+.++.|+-+|.+..-+.+.-++.-|+.=+.-.. . -+.+.+-|+|..|-++..+.+
T Consensus 370 --hd~aQG-----------~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d 436 (832)
T KOG3678|consen 370 --HDYAQG-----------RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPD 436 (832)
T ss_pred --hhhhcc-----------CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCch
Confidence 111110 123367778888886654444433333332222111 1 123445678888888888777
Q ss_pred HHHHHHHHHHHHHhhhcC
Q 000124 779 SEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 779 ~~Vr~~Aa~AL~nL~~~~ 796 (2138)
..-...|.++|.-++..-
T Consensus 437 ~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 437 EVAAKFASEALTVIGEEV 454 (832)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 766777888887776543
No 176
>PLN02222 phosphoinositide phospholipase C 2
Probab=97.85 E-value=5.5e-05 Score=98.29 Aligned_cols=117 Identities=20% Similarity=0.307 Sum_probs=85.1
Q ss_pred CceEEEEEeccccc--------ccccCCCCceEEEEecCCCC-----ccccccccCCCCCccccceeeecCCCCCCeEEE
Q 000124 2009 PGCLTVTIKRGNNL--------KQTMGTTNAFCRLTIGNGPP-----RQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHI 2075 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~-----~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~ 2075 (2138)
+..|.|+|+.|+++ .++....||||++.+ -|-+ ++||+|++|.||.|||+|+|.+-.| -=-.|.+
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei-~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~P-eLAllRf 528 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGI-AGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVP-ELALLRL 528 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEE-eccCCCcceeeeEecCCCCCcccCCeeEEEEEcC-ceeEEEE
Confidence 36799999999874 112134588999999 4433 4699999999999999999999886 4579999
Q ss_pred EEeecCCC-CCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2076 ICKSKNTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2076 ~~~~~~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
+|+++|.+ +.+.+|..+|.++..-.-=| .-+|-+..+..=..-+|.+|++|.
T Consensus 529 ~V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~~l~~a~Lfv~~~~~ 581 (581)
T PLN02222 529 EVHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGEKYKSVKLLVKVEFV 581 (581)
T ss_pred EEEECCCCCCCcEEEEEEcchhhhhCccc---eEEccCCCcCCCCCeeEEEEEEeC
Confidence 99999876 56789999999876533222 224444433322334788898884
No 177
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0013 Score=82.72 Aligned_cols=379 Identities=15% Similarity=0.162 Sum_probs=230.8
Q ss_pred HHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCc
Q 000124 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2138)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI 560 (2138)
++..+.+...++.++.++...+.. -........++.+++++..+.+.+..+|-.||+.|.|++.-... ....--+...
T Consensus 50 d~a~s~~~n~rkGgLiGlAA~~ia-Lg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~-~v~~~Fn~iF 127 (675)
T KOG0212|consen 50 DYAYSPHANMRKGGLIGLAAVAIA-LGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG-EVLVYFNEIF 127 (675)
T ss_pred HhccCcccccccchHHHHHHHHHH-hccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc-CcccchHHHH
Confidence 344566666666555555443321 11112225678899999999999999999999999999762100 0000012223
Q ss_pred chhhhccccCChhHHHHHHHHHHHHHHhh----c-hhhHHHHHHHhc----CCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 561 PAFLWLLKSGGPKGQDASAMALTKLIRAA----D-SATINQLLALLL----GDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 561 ~aLv~LLkS~~~evq~~Aa~AL~nLs~~~----e-~~aI~~Li~LL~----~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
..+.++..+.+..++. ++..|-.+..+. . +=-++.++.+|+ .-++..+.....=+..|- ..+.-+++.-
T Consensus 128 dvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Ld-s~P~~~m~~y 205 (675)
T KOG0212|consen 128 DVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLD-SVPDLEMISY 205 (675)
T ss_pred HHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCCcHHHHhc
Confidence 3455666666666554 444455554431 1 113455555554 456666666665555542 2222233222
Q ss_pred hhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc---ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM---RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~---~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
-...++.|..++.++++++|..+-.+|.++... .|..- --...++.++.-+.+.++.++..|..=+..+..
T Consensus 206 ---l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 206 ---LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred ---chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhc
Confidence 244678889999999999998777766665431 22211 224567888888899999999988777776664
Q ss_pred CCCcccchhhhHHhcCChhhHHhhhhcCCH-HHHHHHHHH---HHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHH
Q 000124 709 PTKTKTTNKMSYIAEGDVKPLIKLAKTSSI-DAAETAVAA---LANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKN 784 (2138)
Q Consensus 709 s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~-~Vr~eAl~A---LaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~ 784 (2138)
. +. ...-..-.|+...++.++.+... .+++.+... |..+.+.+....++--...+..+.+++.++..+.|-.
T Consensus 280 i-~g---~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~ 355 (675)
T KOG0212|consen 280 I-PG---RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIA 355 (675)
T ss_pred C-CC---cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHH
Confidence 2 21 11223345666666777766544 344433332 2233333333323322346778888999999999999
Q ss_pred HHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchH
Q 000124 785 ASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIE 864 (2138)
Q Consensus 785 Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~ 864 (2138)
+..-+..|-...|. +.+.- -.....-|+..|.+.++ .+...++..++.++.+.+.+... ..+.
T Consensus 356 ~L~Wi~~l~~~~p~-ql~~h---~~~if~tLL~tLsd~sd--~vvl~~L~lla~i~~s~~~~~~~-----------~fl~ 418 (675)
T KOG0212|consen 356 VLNWIILLYHKAPG-QLLVH---NDSIFLTLLKTLSDRSD--EVVLLALSLLASICSSSNSPNLR-----------KFLL 418 (675)
T ss_pred HHHHHHHHHhhCcc-hhhhh---ccHHHHHHHHhhcCchh--HHHHHHHHHHHHHhcCcccccHH-----------HHHH
Confidence 98888777766542 21110 14456667777765444 45888999999999765544322 2578
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhhc
Q 000124 865 PLVCCLAEGPPPLQDKAIEILSRLCG 890 (2138)
Q Consensus 865 ~Lv~ll~~~~~~vq~~AieiL~~L~~ 890 (2138)
.|.++...+...++.+|.-|+.++|-
T Consensus 419 sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 419 SLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 88899999888899999988888876
No 178
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.79 E-value=0.00017 Score=88.97 Aligned_cols=219 Identities=20% Similarity=0.181 Sum_probs=146.2
Q ss_pred cHHHHHHHHhc--CCHHHHHHHHHHHHHhccCchhHHHHHhc-------CChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 000124 85 AMPLFISILRS--GTPLAKVNVAATLSVLCKDEDLRLKVLLG-------GCIPPLLSLLKSESTDTRKAAAEALYEVSSG 155 (2138)
Q Consensus 85 gVp~LV~LLks--~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~-------G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~ 155 (2138)
.+..++.+|+. .++++..+++.++..|..++..+...... ..+.++++++.++|..++..|+.+|..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 36677777764 58899999999998887665544443322 3578999988889999999999999999976
Q ss_pred CCCCChhhHHHHHHcCcHHHHHHhhCCCCC-CChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhh------cc-
Q 000124 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNK-QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL------SS- 227 (2138)
Q Consensus 156 ~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~-ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL------~s- 227 (2138)
+..+.. -...+.++.+++.+.+... .+..++..++.+|.+|...++-| ..+.+.+|++.+...+ .+
T Consensus 136 ~~~~~~-----~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R-~~f~~~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 136 GPKRSE-----KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR-QVFWKSNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp TTT--H-----HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH-HHHHTHHHHHHHHHHHH--------
T ss_pred CCcccc-----chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH-HHHHhcCcHHHHHHHHHhhcccCCC
Confidence 432111 1114567778777764221 12335678899999999876555 6777799999999999 22
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHH-HHHHHHhcCCHHHH
Q 000124 228 DNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIK-AKKAVVAADGVPVL 306 (2138)
Q Consensus 228 ~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e-~Rk~i~e~ggL~~L 306 (2138)
...+.+..++.++|.|+. +++....+...+.++.|+.+++....+.+-+-+..++.|+.....+ ....|+..|+++.+
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l 288 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTL 288 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHH
T ss_pred CchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHH
Confidence 246788999999999994 3444456677779999999998667778899999999999986443 66677766655555
Q ss_pred HHhh
Q 000124 307 IGAI 310 (2138)
Q Consensus 307 I~LL 310 (2138)
-.+.
T Consensus 289 ~~L~ 292 (312)
T PF03224_consen 289 QNLS 292 (312)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
No 179
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.27 Score=62.71 Aligned_cols=576 Identities=14% Similarity=0.090 Sum_probs=289.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChH----HHHHhhccC-CHHHHHHHHHHHHHhhcCCCCCChhh
Q 000124 89 FISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIP----PLLSLLKSE-STDTRKAAAEALYEVSSGGLSDDHVG 163 (2138)
Q Consensus 89 LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip----~Lv~LL~se-d~eVr~aAa~AL~nLS~~~~nkd~~g 163 (2138)
.+..|++..|.....|+.++..++.-+ .-.+..| .|++-...+ ...++..+..++.+.|... ++
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~---~P-- 167 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE---AP-- 167 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc---CH--
Confidence 345566777777777777776664311 1123344 444444443 5667888899999999632 22
Q ss_pred HHHHHHcCcH--HHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHH-hCcHHHHHHhhccCCHHHHHHHHHHH
Q 000124 164 MKIFVTEGVV--PTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE-AGGVDIIVGLLSSDNAAAQSNAASLL 240 (2138)
Q Consensus 164 re~IveaG~I--p~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e-~GGI~~Lv~lL~s~s~evq~~A~~aL 240 (2138)
...+...+.+ ......++.. .+..++..++++|.+-+..-.++...=.+ .--++..+..-..++.+++..+..+|
T Consensus 168 e~li~~sN~il~aiv~ga~k~e--t~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl 245 (858)
T COG5215 168 EDLIQMSNVILFAIVMGALKNE--TTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCL 245 (858)
T ss_pred HHHHHHhhHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHH
Confidence 1222223332 2222333332 45678888999988733211111000001 11356677777778899999999999
Q ss_pred HHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000124 241 ARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2138)
Q Consensus 241 ~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~ 320 (2138)
.++..-.-..-+...+.-......+.+.+ .+.++...+..-...++.. +.--.+. +..+-. .+. |
T Consensus 246 ~kim~LyY~fm~~ymE~aL~alt~~~mks-~nd~va~qavEfWsticeE--eid~~~e--------~~~~pe-~p~--q- 310 (858)
T COG5215 246 NKIMMLYYKFMQSYMENALAALTGRFMKS-QNDEVAIQAVEFWSTICEE--EIDGEME--------DKYLPE-VPA--Q- 310 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHH--HhhhHHH--------Hhhccc-Cch--h-
Confidence 88873211111222222222233334443 3446666666555444432 1100000 000000 000 0
Q ss_pred hhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcC
Q 000124 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK 400 (2138)
Q Consensus 321 ~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~ 400 (2138)
...-|..+ +++ +.|.|.+||.
T Consensus 311 -----n~~fa~aa---------------------------v~d---------------------------vlP~lL~LL~ 331 (858)
T COG5215 311 -----NHGFARAA---------------------------VAD---------------------------VLPELLSLLE 331 (858)
T ss_pred -----hcchHHHH---------------------------HHH---------------------------HHHHHHHHHH
Confidence 00001000 111 2233333332
Q ss_pred CC------ChhHHHHHHHHHHH---HhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhh
Q 000124 401 PH------DNKLVQERVLEAMA---SLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2138)
Q Consensus 401 s~------~~e~vr~~Aa~AL~---~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~ 471 (2138)
.. +++.+...+..+|- .+.++. +. +....+.-.-+++.+..-++.++.+++..-.+.......-.
T Consensus 332 ~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~-----i~-~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~ 405 (858)
T COG5215 332 KQGEDYYGDDWNPSMAASSCLQLFAQLKGDK-----IM-RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKI 405 (858)
T ss_pred hcCCCccccccchhhhHHHHHHHHHHHhhhH-----hH-HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhh
Confidence 21 11222223333221 111111 11 11222223334566777788888888887665443333323
Q ss_pred hchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC---CHHHHHHHHHHHHHHhcCCh
Q 000124 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG---SQKAREVAAHVLWILCCHSE 548 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~---d~~vre~Aa~aL~nLs~~sd 548 (2138)
-...+|.+..++.++.--++..++|+++.++.+-. ..+-..|-++..+..+--| .+.+-.++.|...||..|-.
T Consensus 406 V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 406 VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhh
Confidence 35667777777776666789999999999987532 2333457777777665444 67777888999999976422
Q ss_pred hHHH----HHHH--cCCcchhhhcc--ccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 000124 549 DIRA----CVES--AGAVPAFLWLL--KSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVL 620 (2138)
Q Consensus 549 ~~r~----~I~e--~GaI~aLv~LL--kS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La 620 (2138)
..-+ .+.. ...+..|+... ...+...|...-.+|+.|.. ...+.|.. .+..+.
T Consensus 483 ~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~---------------~~~d~V~~----~~a~~~ 543 (858)
T COG5215 483 KAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL---------------ICPDAVSD----ILAGFY 543 (858)
T ss_pred hhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh---------------hcchhHHH----HHHHHH
Confidence 1100 0000 01122222111 11222344444444444432 22222211 111111
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCC----CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH-HH
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSS----NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ-MV 695 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~----s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~-~V 695 (2138)
..... .+ ...+..+-+.+... .++++.+-+.+|..+....+...+.+ +.-.+.-++++|.+..+ .+
T Consensus 544 ~~~~~------kl--~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les~~~t~~ 614 (858)
T COG5215 544 DYTSK------KL--DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILESTKPTTA 614 (858)
T ss_pred HHHHH------HH--HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhccCCchh
Confidence 11000 00 00122222222222 35677777777777765433332222 22345667777776533 34
Q ss_pred HHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHH
Q 000124 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRV 773 (2138)
Q Consensus 696 k~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~L 773 (2138)
-...-.++.+++.+. +.+....-...+|.|.+-|+..+..+...|+...+.|+. ..+.+ +........|+++
T Consensus 615 ~~dV~~aIsal~~sl----~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~--~y~d~~ms~LvQ~ 688 (858)
T COG5215 615 FGDVYTAISALSTSL----EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN--IYADVLMSSLVQC 688 (858)
T ss_pred hhHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHH
Confidence 455567777887643 334445566789999999988888898999999998875 22222 2233456788888
Q ss_pred HhCC--CHHHHHHHHHHHHHhhh
Q 000124 774 LAEG--TSEGKKNASRALHQLLK 794 (2138)
Q Consensus 774 L~~~--~~~Vr~~Aa~AL~nL~~ 794 (2138)
+.+. +.++|-....+.+.++.
T Consensus 689 lss~~~~R~lKPaiLSvFgDIAl 711 (858)
T COG5215 689 LSSEATHRDLKPAILSVFGDIAL 711 (858)
T ss_pred hcChhhccccchHHHHHHHHHHH
Confidence 8776 45667666666666654
No 180
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.002 Score=81.17 Aligned_cols=345 Identities=15% Similarity=0.170 Sum_probs=218.2
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHH
Q 000124 431 AEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 431 ~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
.+.+++.+..+...+..++.+|+..+.+++.-.... ....-......+.++....+..+|. +++.|-.+-..-...+.
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESA 160 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccc
Confidence 456788888999999999999999999988642111 1111222334555565555655554 44555444331111111
Q ss_pred HHHhcCCchHHHHHhh----hCCHHHHHHHHHHHHHHhcCChhHHHHHHH-cCCcchhhhccccCChhHHHHHHHHHHHH
Q 000124 511 AITAAGGIPPLVQLLE----AGSQKAREVAAHVLWILCCHSEDIRACVES-AGAVPAFLWLLKSGGPKGQDASAMALTKL 585 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLk----s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e-~GaI~aLv~LLkS~~~evq~~Aa~AL~nL 585 (2138)
..-.++.++.+|+ ..++..|......|..|-...+ .+++.- ....+-|+.++.+.+++++.-+-.+|+++
T Consensus 161 ---~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 161 ---STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEF 235 (675)
T ss_pred ---cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 0223555555554 4589999999998888855322 222211 34556678899999999998888888877
Q ss_pred HHh----hc----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCH-HHHHH
Q 000124 586 IRA----AD----SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNE-ENQEY 656 (2138)
Q Consensus 586 s~~----~e----~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~-evre~ 656 (2138)
-.. +. .+.++.++.-+.+.++.++..+..=+..+..... ++.. .--+|.+..+...+.+..+ ..++.
T Consensus 236 L~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l---~~~s~il~~iLpc~s~~e~~~i~~~ 311 (675)
T KOG0212|consen 236 LAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLL---LYLSGILTAILPCLSDTEEMSIKEY 311 (675)
T ss_pred HHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchh---hhhhhhhhhcccCCCCCccccHHHH
Confidence 543 22 3567778888888888888776555544433221 1121 1234555666666655444 34554
Q ss_pred HHH---HHHHHhhcChhhhhhhhhC-CCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhh
Q 000124 657 AAS---VLADLFSMRQDICGSLATD-EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKL 732 (2138)
Q Consensus 657 Aa~---ALanL~s~~~e~r~~Ive~-GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~L 732 (2138)
+.. .|..+++ .+..... ++. .++..+.+.+.++..+.|..+..=+..+-...+ .............|++-
T Consensus 312 a~~~n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p----~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 312 AQMVNGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP----GQLLVHNDSIFLTLLKT 385 (675)
T ss_pred HHHHHHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc----chhhhhccHHHHHHHHh
Confidence 433 3445554 2322222 333 467888899999999999988877777765322 23334456678889999
Q ss_pred hhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 733 AKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 733 L~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
|.+.+++|...++..+++++.++..... -..+..|.++..++..-++..+.-++.+||.-
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999986654311 12344466666777777888888888888863
No 181
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.76 E-value=0.0007 Score=83.53 Aligned_cols=191 Identities=19% Similarity=0.240 Sum_probs=138.0
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhcCCCCcc
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRPTKTK 713 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d----gs~~Vk~~AA~ALanLa~s~~~~ 713 (2138)
...+++.++.+++.-++..|+..|..+....+....... .+.++.++..+++ .+...+..|.++|.++.+ ..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~--~~- 181 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR--SK- 181 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT--SH-
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC--cc-
Confidence 477888888889999999999999999875444333322 5667788887765 334567889999999987 33
Q ss_pred cchhhhHHhcCChhhHHhhh-----hc--CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC-CHHHHHHH
Q 000124 714 TTNKMSYIAEGDVKPLIKLA-----KT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNA 785 (2138)
Q Consensus 714 d~~r~~I~~~G~V~~Lv~LL-----~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~-~~~Vr~~A 785 (2138)
..|..+++.++++.|..++ .+ .+..++-+++.++..|+-+++....+...+.++.|+++++.. .+++-+-+
T Consensus 182 -~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~ 260 (312)
T PF03224_consen 182 -EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVS 260 (312)
T ss_dssp -HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHH
T ss_pred -hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHH
Confidence 7899999999999999999 33 335566689999999999999999999999999999998865 68999999
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHH
Q 000124 786 SRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVV 836 (2138)
Q Consensus 786 a~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~AL 836 (2138)
..++.|+....+ +.+...+. ...+.++++.|...+..+..-.+-+..|
T Consensus 261 la~l~Nl~~~~~--~~~~~~mv-~~~~l~~l~~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 261 LAILRNLLSKAP--KSNIELMV-LCGLLKTLQNLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHHHHTTSSSS--TTHHHHHH-HH-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred HHHHHHHHhccH--HHHHHHHH-HccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999998653 22333333 3456778888877777665566655544
No 182
>PLN02230 phosphoinositide phospholipase C 4
Probab=97.76 E-value=9.3e-05 Score=96.35 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=84.7
Q ss_pred CCceEEEEEeccccc-----c---cccCCCCceEEEEecCCCC-----ccccccccCCCCCccccceeeecCCCCCCeEE
Q 000124 2008 LPGCLTVTIKRGNNL-----K---QTMGTTNAFCRLTIGNGPP-----RQTKVVSHSISPEWKEGFTWAFDVPPKGQKLH 2074 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~-----~---~~~~~~~~~~~~~~~~~~~-----~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~ 2074 (2138)
-+..|+|+|+.|+++ + ++-.-.||||++.+ -|.+ |+|||++++.||.|||+|.|.+-.| -=-.|.
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei-~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vP-ELAllR 544 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGI-AGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVP-ELALLR 544 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEE-EECCCCCcccceeccCCCCCCccCCeeEEEEEcC-ceeEEE
Confidence 367899999999986 1 11123599999999 6655 4699999999999999999999986 567999
Q ss_pred EEEeecCCC-CCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEec
Q 000124 2075 IICKSKNTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2075 ~~~~~~~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
++|++++.. +.+.+|..+|.++..-.-=| ..+|-+..+..=..-+|.++|+|.
T Consensus 545 f~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~~ 598 (598)
T PLN02230 545 VEVHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEFV 598 (598)
T ss_pred EEEEECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEeC
Confidence 999999886 55679999999886543222 123333311111234677787773
No 183
>PF05536 Neurochondrin: Neurochondrin
Probab=97.75 E-value=0.0068 Score=80.01 Aligned_cols=433 Identities=16% Similarity=0.164 Sum_probs=238.8
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh---hhhhhhhCCCHHHHHHHhccC-------CHHHHHHHHHHHHHhc
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQD---ICGSLATDEIVNPCMRLLTSN-------TQMVATQSARALGALS 707 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e---~r~~Ive~GaV~~Lv~LL~dg-------s~~Vk~~AA~ALanLa 707 (2138)
.+...+.++++.+++-|-.+...+.+++..++. .++.+.+.=+.+-+-++|+.+ ....+.-|...|+.++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 366778888888877788888888888875443 334577776678889999873 3456667777777777
Q ss_pred CCCCcccchhhhHHhcCChhhHHhhhhcCCH-HHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHH
Q 000124 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI-DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNAS 786 (2138)
Q Consensus 708 ~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~-~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa 786 (2138)
+ ++ +....-.--+-||.|++.+...+. .+...|..+|..++.+|+.+..+.+.|+++.|.+.+.+ ++..++.|.
T Consensus 86 ~--~~--~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 86 R--DP--ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred C--Ch--hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 6 32 222111223468999999988776 99999999999999999999999999999999998877 788899999
Q ss_pred HHHHHhhhcCCCchhhhhhhhh-hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHH
Q 000124 787 RALHQLLKHFPVGDVLKGNAQC-RFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEP 865 (2138)
Q Consensus 787 ~AL~nL~~~~~~~d~i~~~i~~-~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~ 865 (2138)
.++.+++..... +........ ...+..+-......+ ...+.+.+..|+.+-...+... ......+.|+..
T Consensus 161 ~lL~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~--~~~kfell~~L~~~L~~~~~~~------~~~~~~~~W~~~ 231 (543)
T PF05536_consen 161 NLLLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFH--GEDKFELLEFLSAFLPRSPILP------LESPPSPKWLSD 231 (543)
T ss_pred HHHHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHhcCcCCccc------cccCChhhhHHH
Confidence 999999886431 111111111 223344444443322 3447777777776664431110 011124567766
Q ss_pred HHHh----hhcCC-hHHHHHHHHHHHHhhccCCc--hhhhhhhcccccHHH-----------HHHHHhccCCceeehhhh
Q 000124 866 LVCC----LAEGP-PPLQDKAIEILSRLCGDQPA--VLGDFLMARSSSIGA-----------LADRIMHSSSLEVRVGGA 927 (2138)
Q Consensus 866 Lv~l----l~~~~-~~vq~~AieiL~~L~~~~~~--~~~~~~~~~~~~i~~-----------La~~il~s~~~ev~~~~~ 927 (2138)
+... +.++- +..|..|+...+.++..... ...+...+.+++..- .+..++++...+.... +
T Consensus 232 l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~-~ 310 (543)
T PF05536_consen 232 LRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPE-K 310 (543)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHH-H
Confidence 6443 33333 44677787777777665421 222222233333322 2223333333333222 2
Q ss_pred HHHHHhcccchhhHHHHH-----------------hhcCCcHHHHHHHHHHhhhhccCCC--CC-----ccccc----CC
Q 000124 928 ALLICAAKEHKKQSMDAL-----------------DLSGYLKPLIYALVDMMKQNSSCSS--LD-----IEVRT----PR 979 (2138)
Q Consensus 928 ~~~i~a~k~~~~~~~~~L-----------------~~~g~~~~~i~~Lv~l~~~~~~~~~--~d-----~~~~~----~~ 979 (2138)
...+++...-=...|.-| ...+.+..-+...++..++..-... |+ ||+-. ..
T Consensus 311 ~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe 390 (543)
T PF05536_consen 311 QRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEE 390 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhC
Confidence 222211111111111111 2222222223333333333322211 21 22200 00
Q ss_pred Cccccccc----cccccC-----CcCCCCccchhhHHHH---HHHHHhccCCCCcchheeccchHHHHHHhhcc--CCCC
Q 000124 980 GYMERTAF----QEADDF-----DVPDPATILGGTVALW---LLLIISSFLRNNNVTVMEAGALEALSDKLASY--TSNP 1045 (2138)
Q Consensus 980 ~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~a~~---ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~--~~~~ 1045 (2138)
-+.-|+.. |-+.++ ....|.+.++.-.--| -|++|......-|+.+ .-|+-..|.++|... ...+
T Consensus 391 ~~~lr~~v~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~-~~~g~~~l~~~l~~~~~~~~~ 469 (543)
T PF05536_consen 391 TSALRKEVYGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILL-SNGGWKLLCDDLLKILQSPSG 469 (543)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHH-hCCcHHHHHHHHHHHHHhccc
Confidence 00012222 111111 1111222222222223 3456666666656554 469999999998655 2234
Q ss_pred ccccccchhhhH---HHHHHHHHccCCcc-ccchhhh-chHHHHHH
Q 000124 1046 QAEFEDTEGIWI---SALFLAILFQDANI-VLSPATM-RIIPALAL 1086 (2138)
Q Consensus 1046 q~~~e~~~~~~~---~~~ll~~lf~~~~~-~~~~~~~-~~~~~l~~ 1086 (2138)
.++.++..+.|+ |..||+++-..|+. ++.++++ ..++.|+.
T Consensus 470 ~~~~~~~~~~~l~~~c~illNl~~~e~~~~~~~~~~f~~ll~~l~~ 515 (543)
T PF05536_consen 470 DDDAEDSAEMALVTACGILLNLVVTEPKMDVEEEATFIELLKALLQ 515 (543)
T ss_pred CcchhhhhHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence 445555555566 78899999999998 6666655 45566665
No 184
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.64 E-value=0.033 Score=75.23 Aligned_cols=569 Identities=15% Similarity=0.099 Sum_probs=314.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 000124 88 LFISILRSGTPLAKVNVAATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKI 166 (2138)
Q Consensus 88 ~LV~LLks~~~evr~~Aa~~L~~Ls~~-e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~ 166 (2138)
.+..-++..+..-+.+...-+.+++.- ...+. ....+|.+.... ++..++...++.-+.++...-. -..
T Consensus 86 ~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~------~~~ 155 (759)
T KOG0211|consen 86 VLIDELSNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG------GPE 155 (759)
T ss_pred HHhhccCchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc------chh
Confidence 333334444445555566666555321 11111 234567777777 5667788888888888775311 111
Q ss_pred HHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCC-HHHHHHHHHHHHHHHh
Q 000124 167 FVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN-AAAQSNAASLLARLML 245 (2138)
Q Consensus 167 IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s-~evq~~A~~aL~nLs~ 245 (2138)
+ ..-..+.+-.+.. . ++..+++++...+...+......... . -.-.++..+...+ -..+..+|.+++..+-
T Consensus 156 ~-~~~ll~~le~l~~-~--eet~vr~k~ve~l~~v~~~~~~~~~~---~-~lv~l~~~l~~~d~~~sr~sacglf~~~~~ 227 (759)
T KOG0211|consen 156 Y-AHMLLPPLELLAT-V--EETGVREKAVESLLKVAVGLPKEKLR---E-HLVPLLKRLATGDWFQSRLSACGLFGKLYV 227 (759)
T ss_pred H-HHHhhHHHHhhhH-H--HHHHHHHHHHHHHHHHHHhcChHHHH---H-HHHHHHHHccchhhhhcchhhhhhhHHhcc
Confidence 1 1112222222222 1 23457788888887776655433110 0 1112222222221 2245566666666552
Q ss_pred hcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhh
Q 000124 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQA 325 (2138)
Q Consensus 246 ~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~a 325 (2138)
..++ ...+. -+.....-+.++.+..+|..++.-+.+++.. ..+.....+.++.++++..+... .
T Consensus 228 ~~~~---~~vk~-elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~Ddqd---------s 291 (759)
T KOG0211|consen 228 SLPD---DAVKR-ELRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQD---------S 291 (759)
T ss_pred CCCh---HHHHH-HHHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchh---------h
Confidence 2111 11111 2333444444466678888888777777664 22356667777888887776441 2
Q ss_pred hHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChh
Q 000124 326 LQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405 (2138)
Q Consensus 326 lqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e 405 (2138)
+++.|..++.++.+- +.... .. ...+.+.++.......-
T Consensus 292 Vr~~a~~~~~~l~~l-----------~~~~~----------------------------d~-~~~~~~~l~~~~~d~~~- 330 (759)
T KOG0211|consen 292 VREAAVESLVSLLDL-----------LDDDD----------------------------DV-VKSLTESLVQAVEDGSW- 330 (759)
T ss_pred HHHHHHHHHHHHHHh-----------cCCch----------------------------hh-hhhhhHHHHHHhcChhH-
Confidence 777788877665421 11000 00 01222444444444432
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhc-cchhhHHhhhchhHHHHHHHhc
Q 000124 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRR-EVGIWEAIGKREGIQLLISLLG 484 (2138)
Q Consensus 406 ~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~-s~~~~~~I~e~ggIp~LV~LL~ 484 (2138)
.++.........++..- ........-.+....++.....+.+..++.-...++.. +.+....+.....+|.+..+..
T Consensus 331 ~v~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~ 408 (759)
T KOG0211|consen 331 RVSYMVADKFSELSSAV--GPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVL 408 (759)
T ss_pred HHHHHHhhhhhhHHHHh--ccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHh
Confidence 23333333333332211 01111122345566677776677676666555555543 2233344555555788888888
Q ss_pred CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhh
Q 000124 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2138)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv 564 (2138)
+.+..++...+....++....+..+ .-.-..|.+...+++..+.++.+..+.+..+-..++..........-++.+.
T Consensus 409 d~~~~vr~a~a~~~~~~~p~~~k~~---ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~ 485 (759)
T KOG0211|consen 409 DNALHVRSALASVITGLSPILPKER---TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIV 485 (759)
T ss_pred cccchHHHHHhccccccCccCCcCc---CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhh
Confidence 9999999888887776654222110 0123456666777888999999988877777655555444455566788888
Q ss_pred hccccCChhHHHHHHHHHHHHHHhhchhh-HHHHHHH----hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchh
Q 000124 565 WLLKSGGPKGQDASAMALTKLIRAADSAT-INQLLAL----LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2138)
Q Consensus 565 ~LLkS~~~evq~~Aa~AL~nLs~~~e~~a-I~~Li~L----L~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI 639 (2138)
.+..+....++....+.+.-++.....+. .+.+..+ +.+...+++..+...+..+............ .+
T Consensus 486 el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~------~i 559 (759)
T KOG0211|consen 486 ELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLE------EI 559 (759)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHH------hh
Confidence 88777666666666666665554422111 1223233 3344556777777777766544333222222 35
Q ss_pred hHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhh
Q 000124 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMS 719 (2138)
Q Consensus 640 ~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~ 719 (2138)
+.+......++.-.|...+.++..++. -.-..+.....++.+..+..|..+.+|..++..|..+...... .
T Consensus 560 ~k~L~~~~q~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~------~ 630 (759)
T KOG0211|consen 560 PKLLAMDLQDNYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE------S 630 (759)
T ss_pred HHHHHHhcCcccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch------H
Confidence 666666655556666666555554432 2223455667789999999999999999999999988762222 2
Q ss_pred HHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000124 720 YIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2138)
Q Consensus 720 I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNL 751 (2138)
..+..+.+.+..+-.+.+.+++..|..+++.+
T Consensus 631 ~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 631 VRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 33444556666677778888888777776655
No 185
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.61 E-value=0.36 Score=61.63 Aligned_cols=288 Identities=13% Similarity=0.086 Sum_probs=133.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHh
Q 000124 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2138)
Q Consensus 435 ~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~ 514 (2138)
+.|-.++.+..+-++.+++.++..++..+- ..... ...+..|..+|++.....|-.|.+.|..|+...++. -.
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k-v~--- 339 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK-VS--- 339 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce-ee---
Confidence 456667777778888899988888876641 11111 235677888888888889999999999888743321 00
Q ss_pred cCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhH
Q 000124 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATI 594 (2138)
Q Consensus 515 aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI 594 (2138)
-+=+.+-.+..+.+..+-..|...|..-+. .+...+++. -|+.++.=+.++-.-+.-.|.+.|++++-......+
T Consensus 340 -vcN~evEsLIsd~Nr~IstyAITtLLKTGt-~e~idrLv~---~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l 414 (898)
T COG5240 340 -VCNKEVESLISDENRTISTYAITTLLKTGT-EETIDRLVN---LIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYL 414 (898)
T ss_pred -ecChhHHHHhhcccccchHHHHHHHHHcCc-hhhHHHHHH---HHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHH
Confidence 011122222223333333333222222211 111111110 111221111111112222233333333322222223
Q ss_pred HHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhh
Q 000124 595 NQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICG 673 (2138)
Q Consensus 595 ~~Li~LL~-~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~ 673 (2138)
.-|...|. .+.-+-+.++.+++.-+.... ++... .++..|..+.++. +--+-+++.|.-|....|....
T Consensus 415 ~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~--p~skE------raLe~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~ 484 (898)
T COG5240 415 DFLGSSLLQEGGLEFKKYMVDAISDAMEND--PDSKE------RALEVLCTFIEDC--EYHQITVRILGILGREGPRAKT 484 (898)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhhC--chHHH------HHHHHHHHHHhhc--chhHHHHHHHHHhcccCCCCCC
Confidence 33333332 222233444444443332211 11100 1233333333221 1112233333333321111100
Q ss_pred hhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 674 SLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 674 ~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
-...+..+..-+--.+.-+|..|..||..++-.... . .....+...|..++++.+++||..|..+|.++-.
T Consensus 485 ---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d--~----~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 485 ---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD--V----VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred ---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc--c----ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 011233333333334667899999999888762221 1 1122355678889999999999999999999863
No 186
>PLN02228 Phosphoinositide phospholipase C
Probab=97.59 E-value=0.00027 Score=91.89 Aligned_cols=119 Identities=18% Similarity=0.316 Sum_probs=85.6
Q ss_pred CceEEEEEeccccc-----cc---ccCCCCceEEEEecCCCCc-----cccccccCCCCCc-cccceeeecCCCCCCeEE
Q 000124 2009 PGCLTVTIKRGNNL-----KQ---TMGTTNAFCRLTIGNGPPR-----QTKVVSHSISPEW-KEGFTWAFDVPPKGQKLH 2074 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~-----~t~~~~~~~~p~w-~~~f~~~~~~~p~~~~l~ 2074 (2138)
+..|+|+|+.|+.+ .+ .....||||++.+ -|-+. +||+++++.||.| ||+|+|.+..|- =-.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei-~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE-LA~lR 507 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGI-AGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE-LALLW 507 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEE-EecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc-eeEEE
Confidence 55799999999986 11 1122688999998 55432 6999999999999 999999999874 45999
Q ss_pred EEEeecCCCCCc-ccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2075 IICKSKNTFGKS-TLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2075 ~~~~~~~~~~k~-~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
+.|++.+.++++ .+|...|.++.. ..|-- ..+|-+..++.=..-+|.+|+.-.+.
T Consensus 508 f~V~D~d~~~~d~figq~~lPv~~L-r~GYR--~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 508 FKVQDYDNDTQNDFAGQTCLPLPEL-KSGVR--AVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEEeCCCCCCCCEEEEEEcchhHh-hCCee--EEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 999999987555 559999999876 33311 23554442332234568888876554
No 187
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.003 Score=74.01 Aligned_cols=245 Identities=18% Similarity=0.155 Sum_probs=153.8
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcccc
Q 000124 490 HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS 569 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS 569 (2138)
-|-.|+..|.|+... . .+..+.+...+++...+...+..|+... ...+++.|+..+.+
T Consensus 21 ~r~rALf~Lr~l~~~--~---------~i~~i~ka~~d~s~llkhe~ay~LgQ~~-----------~~~Av~~l~~vl~d 78 (289)
T KOG0567|consen 21 NRFRALFNLRNLLGP--A---------AIKAITKAFIDDSALLKHELAYVLGQMQ-----------DEDAVPVLVEVLLD 78 (289)
T ss_pred HHHHHHHhhhccCCh--H---------HHHHHHHhcccchhhhccchhhhhhhhc-----------cchhhHHHHHHhcc
Confidence 344566666666541 1 1233333333333344444444444443 25678888876654
Q ss_pred --CChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchH------H--HHhhh-cccch
Q 000124 570 --GGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED------L--VQKGS-AANKG 638 (2138)
Q Consensus 570 --~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d------~--v~~~l-~~~Ga 638 (2138)
..|.+|..|+.+|+.+. +....+.+.+..++...+|++.+..|+..+--...... . +.... ...+-
T Consensus 79 esq~pmvRhEAaealga~~---~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ss 155 (289)
T KOG0567|consen 79 ESQEPMVRHEAAEALGAIG---DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSS 155 (289)
T ss_pred cccchHHHHHHHHHHHhhc---chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCcccccc
Confidence 45778888888888887 34556667777766666777665555555421100000 0 00000 01112
Q ss_pred hhHHHHhhcCCC-HH-HHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 639 LRSLVQVLNSSN-EE-NQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 639 I~aLV~LLks~s-~e-vre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
+..|-..+.+.+ +. -|+.|.-.|.|+.. +..|.+++.-+.+++.-.|..++.+++.|-. +.
T Consensus 156 v~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--~~---- 218 (289)
T KOG0567|consen 156 VHELRAELLDETKPLFERYRAMFYLRNIGT-----------EEAINALIDGLADDSALFRHEVAFVFGQLQS--PA---- 218 (289)
T ss_pred HHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HHHHHHHHHhcccchHHHHHHHHHHHhhccc--hh----
Confidence 444444444332 22 34555556666544 4567888999999999999999999999964 32
Q ss_pred hhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 717 KMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
.|+.|.+.|.+ ..+-||.+|+.||+.++ ++.+++.|.+++.+..+-+++.+.-+|.-+-.
T Consensus 219 --------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 219 --------AIPSLIKVLLDETEHPMVRHEAAEALGAIA----------DEDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred --------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc----------CHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 68888888866 67889999999999666 56788999999999999999999888865443
No 188
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.57 E-value=0.00025 Score=92.41 Aligned_cols=116 Identities=22% Similarity=0.355 Sum_probs=89.1
Q ss_pred eEEEEEeccccc-ccccCC------CCceEEEEecCCCCc-----ccc-ccccCCCCCccccceeeecCCCCCCeEEEEE
Q 000124 2011 CLTVTIKRGNNL-KQTMGT------TNAFCRLTIGNGPPR-----QTK-VVSHSISPEWKEGFTWAFDVPPKGQKLHIIC 2077 (2138)
Q Consensus 2011 ~l~v~v~~~~~~-~~~~~~------~~~~~~~~~~~~~~~-----~t~-~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~ 2077 (2138)
.|.|.|..|++. .+. ++ .||||.+.+ .|-|. +|| |-+++-||.|+|+|+|.+-.| -=-+|.++|
T Consensus 617 tL~IkI~sGq~~~~~~-~~~~~~~~~dP~v~VeI-~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP-ELAliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDF-GKTKFGEISDPDVYVEI-AGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP-ELALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCC-CCCcccccCCCCEEEEE-cccccchhhhhceeeccCCcCcccCCeEEEEEecc-ceeEEEEEE
Confidence 699999999966 222 33 489999998 88776 699 556779999999999999988 668999999
Q ss_pred eecCCCC-CcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2078 KSKNTFG-KSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2078 ~~~~~~~-k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
++.+.-| .+..|..+|.+.....-=| -.+|-+-.++.=.+-+|.++++|.++
T Consensus 694 ~d~d~~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~~~G~~~~~asLfv~i~~~~~ 746 (746)
T KOG0169|consen 694 HDYDYIGKDDFIGQTTLPVSELRQGYR---HVPLLSREGEALSSASLFVRIAIVER 746 (746)
T ss_pred EecCCCCcccccceeeccHHHhhCcee---eeeecCCCCccccceeEEEEEEEecC
Confidence 9999887 7778999999987543211 12333332344456789999999874
No 189
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.57 E-value=0.00016 Score=92.54 Aligned_cols=120 Identities=18% Similarity=0.311 Sum_probs=99.5
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCCCccc
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTL 2088 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~k~~~ 2088 (2138)
.|.|.|-+|.|| +|--|..||||-+.+..-|-=+|++|-|++.|-|.|+|+| +-||.=.-|-+.|||+|-...+-+
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~--~iP~~F~~l~fYv~D~d~~~D~~I 83 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYF--EIPRTFRYLSFYVWDRDLKRDDII 83 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEE--ecCcceeeEEEEEecccccccccc
Confidence 478999999999 8888999999999997766668999999999999999986 568999999999999994466779
Q ss_pred ceEEEEecceeecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2089 GKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2089 g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
|+|-|+=++.-+---+..+|+|.+-..-.-.-|.+++|++-+.-
T Consensus 84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccc
Confidence 99999999998877889999997753333233344488876654
No 190
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.56 E-value=0.03 Score=75.60 Aligned_cols=413 Identities=17% Similarity=0.124 Sum_probs=261.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHh
Q 000124 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2138)
Q Consensus 435 ~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~ 514 (2138)
+..-.+.....+.++..++.-+.+++..- .......+.++.++++..+....+|..|...+.++...-...- =..
T Consensus 240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~ 314 (759)
T KOG0211|consen 240 PIVQSLCQDDTPMVRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVV 314 (759)
T ss_pred HHHHhhccccchhhHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhh
Confidence 44455667777888888888888877542 2255567778889999999999999999999888875211110 122
Q ss_pred cCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh-----
Q 000124 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA----- 589 (2138)
Q Consensus 515 aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~----- 589 (2138)
....+.+++..++++..++.........|...-.. ......-++....++++...+.+...+.-...++...
T Consensus 315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 35678888888888888888777777666431110 1111233555667777777777777776666665432
Q ss_pred ----chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000124 590 ----DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLF 665 (2138)
Q Consensus 590 ----e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~ 665 (2138)
...++|.+..+..+..++++...+.....+....+.+..+ .-.++.+...+++..+.++.+....+..+-
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti------~~llp~~~~~l~de~~~V~lnli~~ls~~~ 465 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTI------SELLPLLIGNLKDEDPIVRLNLIDKLSLLE 465 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCc------cccChhhhhhcchhhHHHHHhhHHHHHHHH
Confidence 2446688888888999988876555444433222221111 123566777888888999999888776665
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHH
Q 000124 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAV 745 (2138)
Q Consensus 666 s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl 745 (2138)
..+.........+..++.+..+-.+....++.+....+..++.... ..+.+....+.+..-+.+....+++.|+
T Consensus 466 ~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~------~~~~~~~~~~l~~~~l~d~v~~Ir~~aa 539 (759)
T KOG0211|consen 466 EVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG------VEFFDEKLAELLRTWLPDHVYSIREAAA 539 (759)
T ss_pred hccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh------hHHhhHHHHHHHHhhhhhhHHHHHHHHH
Confidence 5445555555666777888888888888888888888888775221 2223333333344446666778899888
Q ss_pred HHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCC
Q 000124 746 AALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMD 823 (2138)
Q Consensus 746 ~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~ 823 (2138)
..|..++. +.++. ....++.+.....+++-..|.....++.-++. .+...+.+....+.+.++..+..
T Consensus 540 ~~l~~l~~~~G~~w~----~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~------v~g~ei~~~~Llp~~~~l~~D~v 609 (759)
T KOG0211|consen 540 RNLPALVETFGSEWA----RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE------VLGQEITCEDLLPVFLDLVKDPV 609 (759)
T ss_pred HHhHHHHHHhCcchh----HHHhhHHHHHHhcCcccchhhHHHHHHHHHHH------HhccHHHHHHHhHHHHHhccCCc
Confidence 88887764 22332 12245556655555567778777777775553 33344555667777888776554
Q ss_pred CCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhh
Q 000124 824 MNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLC 889 (2138)
Q Consensus 824 ~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~ 889 (2138)
.+ .+..++..|..+.+--.. . .....-++.++.+..+.+..++.+|..+..-+.
T Consensus 610 an--VR~nvak~L~~i~~~L~~-~---------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 610 AN--VRINVAKHLPKILKLLDE-S---------VRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred hh--hhhhHHHHHHHHHhhcch-H---------HHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 44 488888887766632111 0 001222444555555666668888877766543
No 191
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.014 Score=75.30 Aligned_cols=409 Identities=14% Similarity=0.046 Sum_probs=241.0
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
.+..++.-+..+++.+|+....+|.-+....... ......+.+.+++...+..-+..+++.++.+..+. .-..+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhh
Confidence 3567777888889999999888887776522111 01234567778888888888899999999887532 22334
Q ss_pred HHcCCcchhhhccccCChhHHHH-HHHHH----HHHHHhhchhhHHH---HHHHhcCCCcchHHHHHHHHHHHHhhhcch
Q 000124 555 ESAGAVPAFLWLLKSGGPKGQDA-SAMAL----TKLIRAADSATINQ---LLALLLGDSPSSKAHVIKVLGHVLTMALQE 626 (2138)
Q Consensus 555 ~e~GaI~aLv~LLkS~~~evq~~-Aa~AL----~nLs~~~e~~aI~~---Li~LL~~~d~~V~~~A~~AL~~La~~~~~~ 626 (2138)
.+.+.+..|.+..++......+. +.-+. .+|...-+...++. +..-..+..+.++..+.++...+....+..
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~ 250 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY 250 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc
Confidence 45667777777777665544443 22211 12222223334444 444444666778888877777665432221
Q ss_pred HHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 627 d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
.++. .++.++.-+....+..+..++..+..+... ....-...-..++|.+.+.|.|..+.+|..+..++.++
T Consensus 251 -aVK~------llpsll~~l~~~kWrtK~aslellg~m~~~-ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 251 -AVKL------LLPSLLGSLLEAKWRTKMASLELLGAMADC-APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred -hhhH------hhhhhHHHHHHHhhhhHHHHHHHHHHHHHh-chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 1111 356666655555889999999999998884 44445556678999999999999999999999999999
Q ss_pred cCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC----CchHHHHHHhcCcHHHHHHHHhCCCHHHH
Q 000124 707 SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS----DPDIAAEVLLEDVVSALTRVLAEGTSEGK 782 (2138)
Q Consensus 707 a~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~----~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr 782 (2138)
+..... +... -.++.|++.+.+++..+.+ +...|..=.- ++.... -.+|-|-+-+.+.+..++
T Consensus 323 ~svidN-~dI~------~~ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psLa-----lmvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 323 GSVIDN-PDIQ------KIIPTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSLA-----LMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHhhcc-HHHH------HHHHHHHHHhcCcccchHH-HHHhhcceeeeeeecchhHH-----HHHHHHHHHHhhccchhh
Confidence 872221 1111 2577788888776544333 3333332110 111010 123444466777888999
Q ss_pred HHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCc
Q 000124 783 KNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSS 862 (2138)
Q Consensus 783 ~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~ 862 (2138)
+.++.+..|+|.--+-..++...+ ....+.|-..+.+. ...+|..+.++|+.+-+......+. ..
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~~f~-----------d~ 454 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEVSFD-----------DL 454 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhhccc-----------cc
Confidence 999999999997432112221111 22344444444444 3467999999997766432111111 12
Q ss_pred hHHHHHhhhcCChH-HHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHH
Q 000124 863 IEPLVCCLAEGPPP-LQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI 931 (2138)
Q Consensus 863 L~~Lv~ll~~~~~~-vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i 931 (2138)
++-+.+........ -+..++..|...+.... ++.-.+|+.++...+.+....+...+|-.+++
T Consensus 455 ~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~------v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~ 518 (569)
T KOG1242|consen 455 IPELSETLTSEKSLVDRSGAAQDLSEVLAGLG------VEKVEDILPEILANASSVLIDERIRDGVIWLF 518 (569)
T ss_pred ccHHHHhhccchhhhhhHHHhhhHHHHHhccc------chHHHHHHHHHHHHHhhccchhhhccCeeehh
Confidence 33333333332222 36667777777777542 23344566666665555555544444444443
No 192
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.013 Score=75.78 Aligned_cols=369 Identities=17% Similarity=0.110 Sum_probs=212.6
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK 472 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e 472 (2138)
..+..-+..+.. .+|+....+|..+.-... ........+.+..++...+-..+..++..+..+..+.. ...+.+
T Consensus 99 ~~~~~~~~tps~-~~q~~~~~~l~~~~~~~~---~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~~~ 172 (569)
T KOG1242|consen 99 EILLEELDTPSK-SVQRAVSTCLPPLVVLSK---GLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESLKE 172 (569)
T ss_pred HHHHHhcCCCcH-HHHHHHHHHhhhHHHHhh---ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhhhh
Confidence 444444444433 477777666655421111 11122345667788888888888888888888877632 234445
Q ss_pred chhHHHHHHHhcCCchhhHHH-HHHHHHHHhhcCchhHHHHHhcCCchHHHHHh---hhCCHHHHHHHHHHHHHHhcCCh
Q 000124 473 REGIQLLISLLGLSSEQHQEY-AVQLIAILTEQVDDSKWAITAAGGIPPLVQLL---EAGSQKAREVAAHVLWILCCHSE 548 (2138)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~-Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LL---ks~d~~vre~Aa~aL~nLs~~sd 548 (2138)
.+.+..+.......+...+.. +..+.-....+-.. ..+-..++.+-.+| .+....+|..+..+...+...-+
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~----~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP----PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC----CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 566777777776665444332 33332222221111 11223344444444 34577888888777766643211
Q ss_pred hHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHh
Q 000124 549 DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLT 621 (2138)
Q Consensus 549 ~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~ 621 (2138)
.. .-...++.++.-+.+.....+..+...|+.+..+.. ..++|.+.+.|.+.+++++..+.+++-.+..
T Consensus 249 ~~----aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 249 AY----AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred cc----hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 10 001123444433334466778888889988876642 5689999999999999999999999999988
Q ss_pred hhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCC----HHHHHHHhccCCHHHHH
Q 000124 622 MALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEI----VNPCMRLLTSNTQMVAT 697 (2138)
Q Consensus 622 ~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~Ga----V~~Lv~LL~dgs~~Vk~ 697 (2138)
..++++. +. .++.|+..+.+++..+.+ +...|..-. .... ++.-. ++.|.+-+.+.+...++
T Consensus 325 vidN~dI-~~------~ip~Lld~l~dp~~~~~e-~~~~L~~tt-----FV~~-V~~psLalmvpiL~R~l~eRst~~kr 390 (569)
T KOG1242|consen 325 VIDNPDI-QK------IIPTLLDALADPSCYTPE-CLDSLGATT-----FVAE-VDAPSLALMVPILKRGLAERSTSIKR 390 (569)
T ss_pred hhccHHH-HH------HHHHHHHHhcCcccchHH-HHHhhccee-----eeee-ecchhHHHHHHHHHHHHhhccchhhh
Confidence 8777774 33 378888888766544443 222222211 1111 12222 34444455666778999
Q ss_pred HHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC
Q 000124 698 QSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG 777 (2138)
Q Consensus 698 ~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~ 777 (2138)
.++..+.|++.-.++ .....-.-...++.|-..+.+..+++|..+..+|+.+..+-..+.. .+.+|.+.+.+.+.
T Consensus 391 ~t~~IidNm~~LveD--p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 391 KTAIIIDNMCKLVED--PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSE 465 (569)
T ss_pred hHHHHHHHHHHhhcC--HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccc
Confidence 999999999973221 2222111122344444455566899999999999888653332222 55667666666544
Q ss_pred CHH-HHHHHHHHHHHhhh
Q 000124 778 TSE-GKKNASRALHQLLK 794 (2138)
Q Consensus 778 ~~~-Vr~~Aa~AL~nL~~ 794 (2138)
... -+.-++..|+..+.
T Consensus 466 k~~~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 466 KSLVDRSGAAQDLSEVLA 483 (569)
T ss_pred hhhhhhHHHhhhHHHHHh
Confidence 322 24444445544443
No 193
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.50 E-value=0.071 Score=66.36 Aligned_cols=351 Identities=15% Similarity=0.097 Sum_probs=216.2
Q ss_pred CcHHHHHHHHhcC-CHHHHHHHHHHHHHhccCchhHHHHHhc-------CChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 000124 84 QAMPLFISILRSG-TPLAKVNVAATLSVLCKDEDLRLKVLLG-------GCIPPLLSLLKSESTDTRKAAAEALYEVSSG 155 (2138)
Q Consensus 84 GgVp~LV~LLks~-~~evr~~Aa~~L~~Ls~~e~~r~~v~~~-------G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~ 155 (2138)
..+-+++.++... .++....++..+-.|-.....+..+.+. -.-.+.+++|.+.+.-..+...+++..++.+
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 4577888888764 5778888888887765555544444321 2367889999998888888899999999987
Q ss_pred CCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC--CHHHH
Q 000124 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQ 233 (2138)
Q Consensus 156 ~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~--s~evq 233 (2138)
|.. .-.+.+.-+-. ..|-.++++....+ -...+.++|-.+...++-| -.+....|+..++..+.+. +-++|
T Consensus 145 g~~-~~~~~e~~~~~---~~l~~~l~~~~~~~--~~~~~~rcLQ~ll~~~eyR-~~~v~adg~~~l~~~l~s~~~~~QlQ 217 (442)
T KOG2759|consen 145 GNC-KMELSELDVYK---GFLKEQLQSSTNND--YIQFAARCLQTLLRVDEYR-YAFVIADGVSLLIRILASTKCGFQLQ 217 (442)
T ss_pred ccc-cccchHHHHHH---HHHHHHHhccCCCc--hHHHHHHHHHHHhcCcchh-heeeecCcchhhHHHHhccCcchhHH
Confidence 652 11111222222 33444455433223 4567889999998887665 5566688999999988432 45788
Q ss_pred HHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCH------HHHHHHHhcCCHHHHH
Q 000124 234 SNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSI------KAKKAVVAADGVPVLI 307 (2138)
Q Consensus 234 ~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~------e~Rk~i~e~ggL~~LI 307 (2138)
-..+.+++.|+. ++...+.+...+.++.|..++..+....+-+-...++.|+..+.+ +....++..+ ++.-+
T Consensus 218 YqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l 295 (442)
T KOG2759|consen 218 YQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTL 295 (442)
T ss_pred HHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHH
Confidence 889999999983 444446666778999999999866666777888888999988643 2222333333 33333
Q ss_pred HhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 000124 308 GAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFD 387 (2138)
Q Consensus 308 ~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~ 387 (2138)
+.+.... +. + +--...+.++. +.|. .-.-.++..+++..
T Consensus 296 ~~L~~rk-----ys-D----EDL~~di~~L~-----------e~L~---------~svq~LsSFDeY~s----------- 334 (442)
T KOG2759|consen 296 QSLEERK-----YS-D----EDLVDDIEFLT-----------EKLK---------NSVQDLSSFDEYKS----------- 334 (442)
T ss_pred HHHHhcC-----CC-c----HHHHHHHHHHH-----------HHHH---------HHHHhhccHHHHHH-----------
Confidence 3332211 00 0 00111111111 0000 00000000000000
Q ss_pred hhhHHHHHHHHcCCCC----hhHHHHHHHHHHHHhhcCchhHHHHhhh--chHHHHHHHHccCC-HHHHHHHHHHHHHhh
Q 000124 388 ARQIEDILVMLLKPHD----NKLVQERVLEAMASLYGNIFLSQWVSHA--EAKKVLIGLITMAT-ADVREYLILSLTKLC 460 (2138)
Q Consensus 388 ~~~Ie~~LV~LL~s~~----~e~vr~~Aa~AL~~L~~n~~~~~~L~e~--~gI~~LV~LL~sss-~evq~~Aa~aL~~Ls 460 (2138)
+..-+.|.-.. ..-.++ +...+.+. ..++.|+.++..++ +.....|+.-++...
T Consensus 335 -----El~sG~L~WSP~Hk~e~FW~e--------------Na~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~V 395 (442)
T KOG2759|consen 335 -----ELRSGRLEWSPVHKSEKFWRE--------------NADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYV 395 (442)
T ss_pred -----HHHhCCcCCCccccccchHHH--------------hHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHH
Confidence 00000010000 000111 11223333 35778899988755 777888889999999
Q ss_pred hccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhh
Q 000124 461 RREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE 503 (2138)
Q Consensus 461 ~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~ 503 (2138)
+..|..+..+.+.||=+.++++++++|+++|.+|+.++..|-.
T Consensus 396 r~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 396 RHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 9989999999999999999999999999999999999877754
No 194
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.49 E-value=4.5e-05 Score=96.50 Aligned_cols=93 Identities=20% Similarity=0.382 Sum_probs=75.7
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCc--------cccccccCCCCCccccceeeec-CCCC--CCeEEEEEe
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPR--------QTKVVSHSISPEWKEGFTWAFD-VPPK--GQKLHIICK 2078 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~t~~~~~~~~p~w~~~f~~~~~-~~p~--~~~l~~~~~ 2078 (2138)
|.|-|..|.|+ -|.+|-.||||++.+ +|++ ||||+++++||+++|.|.|.+- +||. +-|+|..|+
T Consensus 949 L~veVlhA~diipLD~NGlSDPFVviEl--~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen 949 LVVEVLHAKDIIPLDSNGLSDPFVVIEL--IPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred hhhhhhccccccccCCCCCCCCeEEEEe--ccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEee
Confidence 67788888888 788999999999998 5655 6999999999999999999874 5666 889999999
Q ss_pred ecCCC-CCcccceEEEEecceeecceecc
Q 000124 2079 SKNTF-GKSTLGKVTIQIDKVVTEGVYSG 2106 (2138)
Q Consensus 2079 ~~~~~-~k~~~g~~~~~~~~v~~~~~~~~ 2106 (2138)
|||-. ..+.-|..-+-|.+|-.-+++.+
T Consensus 1027 DHD~L~sNDFaGEA~L~Lg~vpGva~~~~ 1055 (1103)
T KOG1328|consen 1027 DHDYLRSNDFAGEAFLELGDVPGVAATGG 1055 (1103)
T ss_pred ccceecccccchHHHHhhCCCCCcccCCC
Confidence 99655 44555666666777777776654
No 195
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.48 E-value=0.021 Score=70.77 Aligned_cols=316 Identities=14% Similarity=0.113 Sum_probs=207.1
Q ss_pred hHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHh-------hhchHHHHHHHHccCCHHHHHHHHHHHHHhhhc
Q 000124 390 QIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVS-------HAEAKKVLIGLITMATADVREYLILSLTKLCRR 462 (2138)
Q Consensus 390 ~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~-------e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~ 462 (2138)
.....++.|+.+.+.++....+..-+..+.....-+..+. +...-.+.+.++...+.-+.......+..++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 3446677777776665565666555555544332221111 123356788899888888888777777777654
Q ss_pred cchhhHHhhhch-hHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHH
Q 000124 463 EVGIWEAIGKRE-GIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAH 538 (2138)
Q Consensus 463 s~~~~~~I~e~g-gIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~ 538 (2138)
....-.. .+.. -...|...+.+ .+......++.+|..+.. .++.|..++.++++..++..+.+. +-.++-+...
T Consensus 145 g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 145 GNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred ccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 3221110 0011 12334555554 677788899999999998 589999999999999999998543 7788889999
Q ss_pred HHHHHhcCChhHHHHHHHcCCcchhhhccccC-ChhHHHHHHHHHHHHHHhhc-----h--------hhHHHHHHHhcC-
Q 000124 539 VLWILCCHSEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAAD-----S--------ATINQLLALLLG- 603 (2138)
Q Consensus 539 aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~-~~evq~~Aa~AL~nLs~~~e-----~--------~aI~~Li~LL~~- 603 (2138)
+++-|+.+ +...+.+..-+.++.|..++++. ...+.+-++.++.|+....+ . .-++.-++.|..
T Consensus 223 ciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r 301 (442)
T KOG2759|consen 223 CIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER 301 (442)
T ss_pred HHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence 99999984 44445567788999999999865 45788888889999986541 0 112333444432
Q ss_pred --CCcchHHHH---HHHHHHHHhhhcc---------------------hHHHHhh---hc--ccchhhHHHHhhcCCC-H
Q 000124 604 --DSPSSKAHV---IKVLGHVLTMALQ---------------------EDLVQKG---SA--ANKGLRSLVQVLNSSN-E 651 (2138)
Q Consensus 604 --~d~~V~~~A---~~AL~~La~~~~~---------------------~d~v~~~---l~--~~GaI~aLV~LLks~s-~ 651 (2138)
+|+++.... .+-|..=.+..+. +++.+.- +. .-..++.|+.++++++ +
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp 381 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP 381 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence 233221111 1111110110111 0111110 11 1234788999998875 6
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 652 ENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 652 evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
.+-..|+.=+.......|+.+..+.+.|+=..+++++.+.+++||.+|..|+..|..
T Consensus 382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 677778888888888899999999999999999999999999999999999988754
No 196
>PRK14707 hypothetical protein; Provisional
Probab=97.46 E-value=1.7 Score=63.13 Aligned_cols=985 Identities=16% Similarity=0.101 Sum_probs=451.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHhccCchhHHHHHhcCCh
Q 000124 50 ANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS--GTPLAKVNVAATLSVLCKDEDLRLKVLLGGCI 127 (2138)
Q Consensus 50 ~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks--~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~I 127 (2138)
.+..+....++|..++...+...+...+.+. ..-|..++..+.. ++.+.+..+..+-..++.++..++.+ ...+|
T Consensus 131 sk~~~~~~c~~a~a~i~~~~~~~~~~~~~l~--~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~i 207 (2710)
T PRK14707 131 SKNLDSGRCERAVARLARHLRREDKARQTLN--AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGV 207 (2710)
T ss_pred hcCCCchHHHHHHHHHHHHhccccchhhhhc--cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHH
Confidence 3444445577777777766665544444332 2346666666643 46777777777778888877666555 55778
Q ss_pred HHHHHhhcc--CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC
Q 000124 128 PPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205 (2138)
Q Consensus 128 p~Lv~LL~s--ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~ 205 (2138)
..++..+.. ++++.+..+...-..|+. +..-+..+-. .+|...++.|..=. +...+..+..+|..=...+
T Consensus 208 a~~lNa~sKWp~~~~c~~aa~~la~~l~~-----~~~l~~~~~~-q~va~~lN~lsKwp--~~~~C~~a~~~lA~rl~~~ 279 (2710)
T PRK14707 208 ATVLNALCKWPDTPDCGNAVSALAERLAD-----ESRLRNELKP-QELGNALNALSKWA--DTPVCAAAASALAERLVDD 279 (2710)
T ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHcC-----cHHHHHhCCh-HHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhhh
Confidence 888888877 467776666555555664 2222344433 34444555553222 1234556665555433322
Q ss_pred CchhHHHHHhCcHHHHHHhhcc-CC-HHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHH
Q 000124 206 DGYWRATLEAGGVDIIVGLLSS-DN-AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADAL 283 (2138)
Q Consensus 206 e~r~~aI~e~GGI~~Lv~lL~s-~s-~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL 283 (2138)
.+. ..-...-.+.-.+..|+. ++ +.++..+..+-..|.+ +++.++.+ +.-.+...++.|..=.+..+-..|...|
T Consensus 280 ~~l-~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~L 356 (2710)
T PRK14707 280 PGL-RKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSAL 356 (2710)
T ss_pred HHH-HHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHH
Confidence 222 111222234444444443 22 3345555555555553 44444333 3334455555554333334433444444
Q ss_pred -HHHhhcCHHHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhHHHHHHHHHHhhcCchhH--------HHHhhhhcC
Q 000124 284 -EALSSKSIKAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALANIYGGMPAL--------VVYLGELSQ 353 (2138)
Q Consensus 284 -~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s-~s~e~mq~~~~~alqe~Al~ALanIsGgis~L--------I~~L~elL~ 353 (2138)
..+.. .++.|+.+- ..|+...++.+.. |... ....+..+|+.-..+...+ +.+...-+.
T Consensus 357 A~rl~~-d~~l~~~l~-~q~~a~~lNalsKWp~~~---------~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnals 425 (2710)
T PRK14707 357 AERLVA-DPELRKDLE-PQGVSSVLNALSKWPDTP---------VCAAAASALAEHVVDDLELRKGLDPQGVSNALNALA 425 (2710)
T ss_pred HHHhcc-CHhhhcccc-hhHHHHHHhhhhcCCCch---------HHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhh
Confidence 34444 467776654 5667777776655 3322 2233445554422222221 111111122
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHH-HHhhcCchhHHHHhhhc
Q 000124 354 SPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAM-ASLYGNIFLSQWVSHAE 432 (2138)
Q Consensus 354 ~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL-~~L~~n~~~~~~L~e~~ 432 (2138)
.=.....|.....+++.-+.+ ....+..+..-++...|-.+-+=++.+.. ..++..| ..|..+.++.+.+.-.+
T Consensus 426 KWPd~~~C~~aa~~lA~~la~----d~~l~~~~~p~~va~~LnalSKWPd~p~c-~~aa~~La~~l~~~~~l~~a~~~q~ 500 (2710)
T PRK14707 426 KWPDLPICGQAVSALAGRLAH----DTELCKALDPINVTQALDALSKWPDTPIC-GQTASALAARLAHERRLRKALKPQE 500 (2710)
T ss_pred cCCcchhHHHHHHHHHHHHhc----cHHHHhhcChHHHHHHHHHhhcCCCChhH-HHHHHHHHHHhcccHHHHhhcCHHH
Confidence 111122333333344332221 11223445555666666666666666533 3334444 34455556655555445
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHH-HhcCCchhhHHHHHHHHHHHhhcCchhHHH
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS-LLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~-LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~ 511 (2138)
....|-.|-+-.+......++..|..-..........+. ...+..++. +-+..+....+.++..|..+....+..+..
T Consensus 501 ~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~-~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~ 579 (2710)
T PRK14707 501 VVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFD-AHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKD 579 (2710)
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhh-hHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHh
Confidence 555555555555555555555444332222122222222 222333333 334555556666666666654433333333
Q ss_pred HHhcCCchHHHHHhhh-C-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhh-ccccCChhHHHHHHHHHHH-HHH
Q 000124 512 ITAAGGIPPLVQLLEA-G-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW-LLKSGGPKGQDASAMALTK-LIR 587 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks-~-d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~-LLkS~~~evq~~Aa~AL~n-Ls~ 587 (2138)
.....+..++..|.. + ....+..+.+.-..+.. ....+..+. ...+..++. +-|..+....+.++..|.. +..
T Consensus 580 -L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~~l~-~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~ 656 (2710)
T PRK14707 580 -LHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRKELD-PVDVTNVLNALSKWPGTEVCAEVARLLAGRLVG 656 (2710)
T ss_pred -hhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc-Chhhhhhcc-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhh
Confidence 334456666666543 3 33444444444444443 333322222 222233332 3344444444555444432 221
Q ss_pred hh------chhhHHH-HHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH-hhcCCCHHHHHHHHH
Q 000124 588 AA------DSATINQ-LLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ-VLNSSNEENQEYAAS 659 (2138)
Q Consensus 588 ~~------e~~aI~~-Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~-LLks~s~evre~Aa~ 659 (2138)
+. +...+.- |-.|=+-.+.+....+..+|+... ...++.. ..+ ....+..+++ +-|-++...-..++.
T Consensus 657 ~~~l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rL--a~~~~Lr-~al-~pQ~vAN~LNALSKWP~~~~Cr~AA~ 732 (2710)
T PRK14707 657 DRLLRKTFNSLDVANALNALSKWPDTPVCAAAAGGMAERL--AADPGLR-KEL-NPVDVANALNALSKWPRTPVCAAVAS 732 (2710)
T ss_pred chhhHhhcchHHHHHHHHhhhcCCCchHHHHHHHHHHHHH--hcChhhH-hhc-CHHHHHHHHhhhhcCCCcHHHHHHHH
Confidence 11 1112222 222223334444445555554321 2222221 111 2233444444 334444444444555
Q ss_pred HHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH-HhcCCCCcccchhhhHHhcCChhhHHhhhhc-C-
Q 000124 660 VLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG-ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-S- 736 (2138)
Q Consensus 660 ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALa-nLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~- 736 (2138)
.|+.-....+..+..+-.+++-..|-.+-+=.....-..|+.+|+ .++. . +..+..+. ..-+...++-|.. +
T Consensus 733 ~LA~rL~~~p~l~~a~~aQevANaLNALSKWPd~~~C~~AA~aLA~rLa~--~--~~Lr~aL~-pQ~vAn~LNALSKWPe 807 (2710)
T PRK14707 733 ALAARVVAEPRLRKAFDAQQVATALNALSKWPDNQACAAAANTLAERQLR--E--PDVRDVLK-PREMTNALNALSKWPD 807 (2710)
T ss_pred HHHHHHhcChhhhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh--C--cchhhhcC-HHHHHHHHHHhhcCCC
Confidence 555544446666655444444444444334344444455555554 3443 1 13332211 1122223333332 3
Q ss_pred CHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHH
Q 000124 737 SIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLV 816 (2138)
Q Consensus 737 s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV 816 (2138)
.+.++..|...=..+..++..+..+-.+++-..|-.+-+=.+...++.|+.+|..-.... ..++..+..++... .+
T Consensus 808 ~~~Cr~AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e---~~LR~aL~~Qevan-tL 883 (2710)
T PRK14707 808 TPACAAAASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADE---PELRHTLTAHGVVI-VL 883 (2710)
T ss_pred chHHHHHHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC---hhhhhccchHHHHH-HH
Confidence 344554444444456678888877655555555555555567788888888887544332 23333333332222 22
Q ss_pred HhhccCCCC-chhHHHHHHHHHH-HhhcccCCcccCCcccccccCCCchHHHHHhhh-cCChHHHHHHHHHHHHhhccCC
Q 000124 817 DSLNAMDMN-GTDVADALEVVAL-LARTKQGLNFTYPPWAALAEVPSSIEPLVCCLA-EGPPPLQDKAIEILSRLCGDQP 893 (2138)
Q Consensus 817 ~LL~s~~~~-~~~~~~AL~ALa~-La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~-~~~~~vq~~AieiL~~L~~~~~ 893 (2138)
+-|+ ++. ...-..|..+|+. |.....-+.... ++.+...+.-+. =+.......|+..|..-+...+
T Consensus 884 NALS--KWPd~~~C~~AA~aLA~rL~~d~~Lrqal~---------aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~ 952 (2710)
T PRK14707 884 NALS--KWPNVPVCAAAASALAERLADEPELRKALS---------AHRVATALNALSKWPDIPVCATAASALAERLSDDP 952 (2710)
T ss_pred hhhc--cCCCcHHHHHHHHHHHHHHhcCHHHHhhcc---------HHHHHHHHhhhccCCCchHHHHHHHHHHHHhccCh
Confidence 2221 222 2224444444442 221111111111 111111111111 1112234444444444443322
Q ss_pred c--------hhhhhhhccccc---------HHHHHHHHhccCCce--eehhhhHHHH-----HhcccchhhHHHHH-h--
Q 000124 894 A--------VLGDFLMARSSS---------IGALADRIMHSSSLE--VRVGGAALLI-----CAAKEHKKQSMDAL-D-- 946 (2138)
Q Consensus 894 ~--------~~~~~~~~~~~~---------i~~La~~il~s~~~e--v~~~~~~~~i-----~a~k~~~~~~~~~L-~-- 946 (2138)
. -+.+.++.=||| ...|+.+|.....+. .---+....+ --+...|.+++..| .
T Consensus 953 ~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rL 1032 (2710)
T PRK14707 953 DLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARL 1032 (2710)
T ss_pred hhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHh
Confidence 1 222333333444 223444543222111 0000111111 00222333333333 0
Q ss_pred --h----cCCcHHHHHHHH-HHhhhhccCCCCCcccccCCCcccccccccccc----------CCcC------------C
Q 000124 947 --L----SGYLKPLIYALV-DMMKQNSSCSSLDIEVRTPRGYMERTAFQEADD----------FDVP------------D 997 (2138)
Q Consensus 947 --~----~g~~~~~i~~Lv-~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----------~~~~------------~ 997 (2138)
. -++-...+.+.+ .+|| =|| ...+|.+...+.. -+.| =
T Consensus 1033 a~ep~L~~amdaQ~lan~LNALSK------WPd-------e~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKW 1099 (2710)
T PRK14707 1033 SNDPGLCKALSSQGLTTVLNALCK------WPE-------MPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKW 1099 (2710)
T ss_pred ccCHhhhhhcchHHHHHHHHhhcc------CCC-------chhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcC
Confidence 0 112222233322 3332 244 1112222211111 1111 1
Q ss_pred CCccchhhHHHHHHHHHhccCCCCcchheeccchHHHHHHhhccCCCCccccccchhhhHHHHHHHHHccCCccc-----
Q 000124 998 PATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIV----- 1072 (2138)
Q Consensus 998 ~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~e~~~~~~~~~~ll~~lf~~~~~~----- 1072 (2138)
|+.+-....++.|..+|+ ++....--|.+-++-.+..-| |.-|+++.=.. ..-.|-+-|-.+++++
T Consensus 1100 P~~~~Cr~Aa~~LA~rL~--~~~~l~~~fd~q~vA~~LNAL---SKWp~~~~cr~----Aa~~LA~RL~~d~~Lr~a~~~ 1170 (2710)
T PRK14707 1100 PDSPVCAAAASALAKRLT--DDAGLRHVFDPINVSQALNAL---SKWPGTQACES----AIDVLAATLANAPGLRNALSA 1170 (2710)
T ss_pred CCcHHHHHHHHHHHHHhc--cccchhccCCHHHHHHHHHHH---hcCCCchHHHH----HHHHHHHHhccchhhhhhcCH
Confidence 899999999999999996 444555566766666666666 34455443333 1223334456666663
Q ss_pred --------------cchhhhchHHHHHHHhcchhhhhHHHHHHHHHHhhhcCCcch
Q 000124 1073 --------------LSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGI 1114 (2138)
Q Consensus 1073 --------------~~~~~~~~~~~l~~~l~~~~~~~r~~aa~~~~~~~~~~~~~~ 1114 (2138)
+.|+.++++-+|+..|-+++.-=|-|..+.||.+-=--||.+
T Consensus 1171 Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~sRl~ 1226 (2710)
T PRK14707 1171 QGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANAMSRLS 1226 (2710)
T ss_pred HHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999877543334443
No 197
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.45 E-value=0.0062 Score=74.82 Aligned_cols=274 Identities=16% Similarity=0.139 Sum_probs=179.0
Q ss_pred HHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHH
Q 000124 119 LKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG 196 (2138)
Q Consensus 119 ~~v~~~G~Ip~Lv~LL~se--d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~ 196 (2138)
..+...|++..|++++..+ ...+|..|++.|..+.. .++++.++.-| .-.++.+-+.. +.........+
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~------aeN~d~va~~~-~~~Il~lAK~~--e~~e~aR~~~~ 244 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV------AENRDRVARIG-LGVILNLAKER--EPVELARSVAG 244 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh------hhhhhHHhhcc-chhhhhhhhhc--CcHHHHHHHHH
Confidence 3456679999999999885 44569999999999875 34577777766 44444444332 23457888999
Q ss_pred HHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH-hhcCCCcchhhccchHHHHHHHhccCCCHhH
Q 000124 197 ALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM-LAFGDSIPTVIDSGAVKALVQLVGQNNDISV 275 (2138)
Q Consensus 197 aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs-~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~v 275 (2138)
.|.+|-.+++..+..++..||++.++-.....++.+..+|+-+|.|.. ....+.++.+++..+-..|.-+-. ..|.-.
T Consensus 245 il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~-skDel~ 323 (832)
T KOG3678|consen 245 ILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAF-SKDELL 323 (832)
T ss_pred HHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhc-chHHHH
Confidence 999999999999999999999999999999999999999999999887 455556677778777777766654 457788
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCC
Q 000124 276 RASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSP 355 (2138)
Q Consensus 276 r~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~ 355 (2138)
|..|+.+..-+.. +.+....+.+.|.+..+--++...++. .++.....+ .-|.-+.-+.+|..+|++.
T Consensus 324 R~~AClAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~----~FARD~hd~-------aQG~~~d~LqRLvPlLdS~ 391 (832)
T KOG3678|consen 324 RLHACLAVAVLAT-NKEVEREVRKSGTLALVEPLVASLDPG----RFARDAHDY-------AQGRGPDDLQRLVPLLDSN 391 (832)
T ss_pred HHHHHHHHhhhhh-hhhhhHHHhhccchhhhhhhhhccCcc----hhhhhhhhh-------hccCChHHHHHhhhhhhcc
Confidence 9999999988888 466666666666655444444433321 111100000 0122233445556666644
Q ss_pred CchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHh
Q 000124 356 RLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL 418 (2138)
Q Consensus 356 ~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L 418 (2138)
+...++..+. .+|..-. ++ ........|.+-+.+..|..+..+++.. .-..+.++|.-+
T Consensus 392 R~EAq~i~AF-~l~~EAa-IK-s~Q~K~kVFseIGAIQaLKevaSS~d~v-aakfAseALtvi 450 (832)
T KOG3678|consen 392 RLEAQCIGAF-YLCAEAA-IK-SLQGKTKVFSEIGAIQALKEVASSPDEV-AAKFASEALTVI 450 (832)
T ss_pred hhhhhhhHHH-HHHHHHH-HH-HhccchhHHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHHh
Confidence 4333332222 1221111 11 1234566788888888888888866542 334555555544
No 198
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.074 Score=63.68 Aligned_cols=215 Identities=14% Similarity=0.152 Sum_probs=140.2
Q ss_pred HHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCch-----hHHHHHhcCChHHHHHhhc
Q 000124 61 ITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED-----LRLKVLLGGCIPPLLSLLK 135 (2138)
Q Consensus 61 AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~-----~r~~v~~~G~Ip~Lv~LL~ 135 (2138)
+..+|..|....+.+. ++ .+.+|.|-.-|..++..++.-+|+.++.+..+.+ ....++..|..+.++.+..
T Consensus 63 cVscLERLfkakegah-la---pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg 138 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAH-LA---PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG 138 (524)
T ss_pred HHHHHHHHHhhccchh-hc---hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc
Confidence 5566666655442221 11 1235555555666788899999999877755432 3344556799999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHH--HhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHH
Q 000124 136 SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLW--DQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL 213 (2138)
Q Consensus 136 sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll--~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~ 213 (2138)
.+|.+|-.+|.+.+..++. -+.+.+.+++......+- .+-...+ ..++......+..+.+-+.......-
T Consensus 139 geddeVAkAAiesikrial-----fpaaleaiFeSellDdlhlrnlaakcn---diaRvRVleLIieifSiSpesaneck 210 (524)
T KOG4413|consen 139 GEDDEVAKAAIESIKRIAL-----FPAALEAIFESELLDDLHLRNLAAKCN---DIARVRVLELIIEIFSISPESANECK 210 (524)
T ss_pred CCcHHHHHHHHHHHHHHHh-----cHHHHHHhcccccCChHHHhHHHhhhh---hHHHHHHHHHHHHHHhcCHHHHhHhh
Confidence 9999999999999999996 466677777766554332 2211111 23455667777777776654444555
Q ss_pred HhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhc-cCCCHhHHHHHHHHHHHHhh
Q 000124 214 EAGGVDIIVGLLSSD-NAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG-QNNDISVRASAADALEALSS 288 (2138)
Q Consensus 214 e~GGI~~Lv~lL~s~-s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~-s~sd~~vr~~Aa~aL~nLs~ 288 (2138)
..|-++.|..=|..+ +.-++.+++.....|+ ...+.++.+...|.++.+..++. .++++..+-.+......+..
T Consensus 211 kSGLldlLeaElkGteDtLVianciElvteLa-eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffg 286 (524)
T KOG4413|consen 211 KSGLLDLLEAELKGTEDTLVIANCIELVTELA-ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG 286 (524)
T ss_pred hhhHHHHHHHHhcCCcceeehhhHHHHHHHHH-HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc
Confidence 667778777777663 4557888888888888 44556677778899999988884 33444444445444444433
No 199
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.48 Score=60.55 Aligned_cols=286 Identities=19% Similarity=0.112 Sum_probs=167.4
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 000124 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE 555 (2138)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~ 555 (2138)
.|.|-..+++.-+.+...++++++.++..+-. ...+ ...+..|-.+|++.....|..|.++|..|+...... +
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v- 338 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---V- 338 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---e-
Confidence 45566677777788999999999988763311 1111 224566667788888899999999999998743221 0
Q ss_pred HcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHH----HhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLA----LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 556 e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~----LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
.-+=+.+-.+..+.+..+-..|..+|..-. ..+.|..|++ ++.+-++.-+.-+.++++.|+..-+.+..
T Consensus 339 -~vcN~evEsLIsd~Nr~IstyAITtLLKTG---t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~--- 411 (898)
T COG5240 339 -SVCNKEVESLISDENRTISTYAITTLLKTG---TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL--- 411 (898)
T ss_pred -eecChhHHHHhhcccccchHHHHHHHHHcC---chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH---
Confidence 001111223344555555555555554332 2223333333 33333344344445555555433222110
Q ss_pred hhcccchhhHHHH-hhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 000124 632 GSAANKGLRSLVQ-VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 632 ~l~~~GaI~aLV~-LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~ 710 (2138)
..+.-|.. +++.+.-+-+..++.++..+....|+.++.+ +..|..++.|.. -...+.+.|+-|++..
T Consensus 412 -----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDce--y~~I~vrIL~iLG~Eg 479 (898)
T COG5240 412 -----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCE--YHQITVRILGILGREG 479 (898)
T ss_pred -----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcc--hhHHHHHHHHHhcccC
Confidence 12444554 3345577788888888888887777666543 445666665532 2234567777777643
Q ss_pred CcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALH 790 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~ 790 (2138)
|..+.- ...|+.+.+-+--.+.-+|..|+.||...+.+.+. ....+.....|-+++.+.++++|..|+..|.
T Consensus 480 P~a~~P------~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d--~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~ 551 (898)
T COG5240 480 PRAKTP------GKYVRHIYNRLILENNIVRSAAVQALSKFALNISD--VVSPQSVENALKRCLNDQDDEVRDRASFLLR 551 (898)
T ss_pred CCCCCc------chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc--cccHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 431110 11455555555557788999999999887653210 1112233456778999999999999999999
Q ss_pred Hhhhc
Q 000124 791 QLLKH 795 (2138)
Q Consensus 791 nL~~~ 795 (2138)
++-..
T Consensus 552 ~~~~~ 556 (898)
T COG5240 552 NMRLS 556 (898)
T ss_pred hhhhh
Confidence 98653
No 200
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.19 Score=65.84 Aligned_cols=243 Identities=14% Similarity=0.097 Sum_probs=157.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHh
Q 000124 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2138)
Q Consensus 435 ~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~ 514 (2138)
.-++.|+.++.+.+++.|+..+...+..-++.- ....|.|+.-|.++|+.++-.|+..+|.|++.++.+--
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---- 217 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---- 217 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc----
Confidence 447889999999999999999998877645432 34578999999999999999999999999998777633
Q ss_pred cCCchHHHHHhhhC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCCh-hHHHHHHHHHHHH--HHh-h
Q 000124 515 AGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-KGQDASAMALTKL--IRA-A 589 (2138)
Q Consensus 515 aGaIp~LV~LLks~-d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~-evq~~Aa~AL~nL--s~~-~ 589 (2138)
..-|.+.++|.+. +-=+.......+++|+--.....+ ..+++|.++++++.. .+.+.|..+.... +.. +
T Consensus 218 -~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 218 -QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred -cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence 3456677777655 333444556777777664443332 357778888877653 4455555544322 111 1
Q ss_pred c-hh----hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHH
Q 000124 590 D-SA----TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664 (2138)
Q Consensus 590 e-~~----aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL 664 (2138)
+ .. .+..|-.++.+.|++.+...+-|++.++ ..++..++.- -..++..|.+.++.+|..|...|..+
T Consensus 292 d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~--ktHp~~Vqa~------kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 292 DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKIL--KTHPKAVQAH------KDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHh--hhCHHHHHHh------HHHHHHHhccCCchhHHHHHHHHHHH
Confidence 1 11 2344555667888888777777776654 2344444332 45667788888999999999999888
Q ss_pred hhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhc
Q 000124 665 FSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALS 707 (2138)
Q Consensus 665 ~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALanLa 707 (2138)
.+ .++...+ ++.|+..+.. .....|..-+.-+..++
T Consensus 364 Vs--kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 364 VS--KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred hh--hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 86 4444433 4455554432 22344544444444443
No 201
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.12 Score=67.88 Aligned_cols=339 Identities=17% Similarity=0.157 Sum_probs=187.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMK 165 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre 165 (2138)
|..+-+-|+++++.+|.-|+++|..+- ..++.--.+-.+-++..+.++.||+.|+.++-.|.+-+. + -+.
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~--e--~k~ 179 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP--E--QKD 179 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh--h--hHH
Confidence 444455566667777777777776551 111100001122245556799999999999999987532 1 122
Q ss_pred HHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000124 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245 (2138)
Q Consensus 166 ~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~ 245 (2138)
. .+..+-.+|.+.+ +.|...|..+...+|.+. ...+ ++--..+|.+|...++=-|...+.+|.+-+.
T Consensus 180 q-----L~e~I~~LLaD~s---plVvgsAv~AF~evCPer---ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 180 Q-----LEEVIKKLLADRS---PLVVGSAVMAFEEVCPER---LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred H-----HHHHHHHHhcCCC---CcchhHHHHHHHHhchhH---HHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 2 2333445555544 458889999999998853 1222 2346778888877665566667777766652
Q ss_pred ---hcCCC-----------c----------chhhccchHHHHHH----HhccCCCHhHHHHHHHHHHHHhhcCHHHHHHH
Q 000124 246 ---AFGDS-----------I----------PTVIDSGAVKALVQ----LVGQNNDISVRASAADALEALSSKSIKAKKAV 297 (2138)
Q Consensus 246 ---~~~e~-----------r----------~~l~~~GaL~~LL~----LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i 297 (2138)
..|.. + ......--+..|++ +++ +.+..+-..++.+...++.. .+..
T Consensus 247 ~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~-S~n~sVVmA~aql~y~lAP~-~~~~--- 321 (968)
T KOG1060|consen 247 HQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ-SRNPSVVMAVAQLFYHLAPK-NQVT--- 321 (968)
T ss_pred hcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh-cCCcHHHHHHHhHHHhhCCH-HHHH---
Confidence 11100 0 00000111222222 222 34445555566666665553 1111
Q ss_pred HhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhc
Q 000124 298 VAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQ 377 (2138)
Q Consensus 298 ~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q 377 (2138)
+....|+.++.++.. .|...+++++.++..
T Consensus 322 ---~i~kaLvrLLrs~~~----------vqyvvL~nIa~~s~~------------------------------------- 351 (968)
T KOG1060|consen 322 ---KIAKALVRLLRSNRE----------VQYVVLQNIATISIK------------------------------------- 351 (968)
T ss_pred ---HHHHHHHHHHhcCCc----------chhhhHHHHHHHHhc-------------------------------------
Confidence 123455555554331 233333333333211
Q ss_pred CCCCCCcccchhhHHHHHHHH-cCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHH
Q 000124 378 KSGVDDEPFDARQIEDILVML-LKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSL 456 (2138)
Q Consensus 378 ~~~~~~~~~~~~~Ie~~LV~L-L~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL 456 (2138)
++.-.+|.+..+ +.+.++..++.+=+..|++|.....+...+ +-+...+.+.+..+-..++.++
T Consensus 352 ---------~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~IL------rE~q~YI~s~d~~faa~aV~Ai 416 (968)
T KOG1060|consen 352 ---------RPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEIL------RELQTYIKSSDRSFAAAAVKAI 416 (968)
T ss_pred ---------chhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHH------HHHHHHHhcCchhHHHHHHHHH
Confidence 122334555554 345566667777777788876544333322 2345566777776666777888
Q ss_pred HHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh
Q 000124 457 TKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527 (2138)
Q Consensus 457 ~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks 527 (2138)
+.++...... ...++.-|++++++.+..+...++..+..|...++.... ..+..|.+++.+
T Consensus 417 GrCA~~~~sv-----~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~-----~ii~~La~lldt 477 (968)
T KOG1060|consen 417 GRCASRIGSV-----TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL-----EILFQLARLLDT 477 (968)
T ss_pred HHHHHhhCch-----hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHH-----HHHHHHHHHhhh
Confidence 8777653322 345678899999999999999999999999875443221 234556666643
No 202
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.19 Score=66.33 Aligned_cols=437 Identities=15% Similarity=0.140 Sum_probs=228.9
Q ss_pred HHHHHcCCCChhHHHHHHHHH-HHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhh
Q 000124 394 ILVMLLKPHDNKLVQERVLEA-MASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK 472 (2138)
Q Consensus 394 ~LV~LL~s~~~e~vr~~Aa~A-L~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e 472 (2138)
-|+.+|++..+. .+..|..- ++-++.+.+.... .+..+....+.+.++++-.--.|...+...++..
T Consensus 39 dL~~lLdSnkd~-~KleAmKRIia~iA~G~dvS~~------Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA----- 106 (968)
T KOG1060|consen 39 DLKQLLDSNKDS-LKLEAMKRIIALIAKGKDVSLL------FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA----- 106 (968)
T ss_pred HHHHHHhccccH-HHHHHHHHHHHHHhcCCcHHHH------HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----
Confidence 466777776554 44444433 3444555443322 2445666677778887777777777776644321
Q ss_pred chhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
.=.|..+-+-|+++|+.+|..|+++|..+-.. ++.-=.+-.+-++..+.++.+|..|+.++-.|=.-..+.+.
T Consensus 107 LLSIntfQk~L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 107 LLSINTFQKALKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred eeeHHHHHhhhcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 12467788889999999998888887655331 11111122233444567899999999999888442222222
Q ss_pred HHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh-hcchHH
Q 000124 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTM-ALQEDL 628 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e---~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~-~~~~d~ 628 (2138)
.+ +..+-.++.+.+|-+...|+.+.-.++-+.- .+-...+.+++.+-++=-+....+.|..-+.. ...+..
T Consensus 180 qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~ 254 (968)
T KOG1060|consen 180 QL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTV 254 (968)
T ss_pred HH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccc
Confidence 22 2334467889999999999988877763310 11112333333332221122222222222211 011100
Q ss_pred HHhh--------------------hcccch----hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHH
Q 000124 629 VQKG--------------------SAANKG----LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPC 684 (2138)
Q Consensus 629 v~~~--------------------l~~~Ga----I~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~L 684 (2138)
.... +....- ++..-.++.+.++.+-..++.+++.++-.+ ...+++++|
T Consensus 255 ~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-------~~~~i~kaL 327 (968)
T KOG1060|consen 255 VDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-------QVTKIAKAL 327 (968)
T ss_pred cccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-------HHHHHHHHH
Confidence 0000 000111 233334677788999999999999987521 123568999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChh-hHHhhh-hcCC-HHHHHHHHHHHHHhhCCchHHHHH
Q 000124 685 MRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVK-PLIKLA-KTSS-IDAAETAVAALANLLSDPDIAAEV 761 (2138)
Q Consensus 685 v~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~-~Lv~LL-~s~s-~~Vr~eAl~ALaNLa~~~e~r~~I 761 (2138)
+++|++.. .+|.-..++++.++...+ +... .+.+.. .+.| ..++.-=+..|.||+......
T Consensus 328 vrLLrs~~-~vqyvvL~nIa~~s~~~~------------~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~--- 391 (968)
T KOG1060|consen 328 VRLLRSNR-EVQYVVLQNIATISIKRP------------TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNIS--- 391 (968)
T ss_pred HHHHhcCC-cchhhhHHHHHHHHhcch------------hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH---
Confidence 99988743 344444455555543111 1222 233322 2233 344445667777776422211
Q ss_pred HhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 762 LLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 762 i~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
..++.|..+.++.+-.+-..|+.+|++-+...- .+ ...+...|+.++++.++.. ..+|...+..|-.
T Consensus 392 ---~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~---sv-----~~tCL~gLv~Llsshde~V--v~eaV~vIk~Llq 458 (968)
T KOG1060|consen 392 ---EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG---SV-----TDTCLNGLVQLLSSHDELV--VAEAVVVIKRLLQ 458 (968)
T ss_pred ---HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC---ch-----hhHHHHHHHHHHhcccchh--HHHHHHHHHHHHh
Confidence 133445666666666666666666666555321 11 1335566777776544332 5555555444432
Q ss_pred cc-------------------cCCcccCCccccccc-------CCCchHHHHHhhhcCChHHHHHHHHHHHHhhc
Q 000124 842 TK-------------------QGLNFTYPPWAALAE-------VPSSIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2138)
Q Consensus 842 ~~-------------------~~~~~i~~~~~~~~~-------~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~ 890 (2138)
.+ ....+....|..+.- .|..+..+.....++.++++-..++.-.++.-
T Consensus 459 ~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 459 KDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYL 533 (968)
T ss_pred hChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence 11 111122234544432 23334444555556666676666666665543
No 203
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.34 E-value=0.00098 Score=70.74 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=102.0
Q ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHH
Q 000124 435 KVLIGLI-TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513 (2138)
Q Consensus 435 ~~LV~LL-~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~ 513 (2138)
+.|++-+ ...+.+.++....-|++++.+ |.++..+.+.+.+..++..+...|+...+.++.+|||+|. +..+...|.
T Consensus 19 q~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ 96 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHH
Confidence 3344433 346788899999999999999 8899999999999999999999999999999999999998 688889999
Q ss_pred hcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 000124 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE 555 (2138)
Q Consensus 514 ~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~ 555 (2138)
+++++|..+..+.++...+...++.++..|+.....-+..+.
T Consensus 97 ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 999999999999999999999999999999875544444444
No 204
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.31 E-value=8.9e-05 Score=93.91 Aligned_cols=173 Identities=19% Similarity=0.391 Sum_probs=122.1
Q ss_pred ccchhhhhHHHhhhccchhHhhhhHHHHHHHHhhhcCCCcHHHHhHHHHHHhhhhhHHHHHHHhCCCchhhhhhhhhhcC
Q 000124 1929 EAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCL 2008 (2138)
Q Consensus 1929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2008 (2138)
+.|-..|-|-+| -.|-|+-||+.+- -+++.....|+|=- +++|= .-+.-||+.-
T Consensus 62 ~ealytvl~~~g--~~d~e~~~e~l~s---y~~~~fg~~~~eh~--------~~~e~---v~~~k~P~~~---------- 115 (1103)
T KOG1328|consen 62 VEALYTITHKLG--QGDVEESQESLYK---YVRNAFGGDAAEHN--------ALMEK---VKQNKPPSVL---------- 115 (1103)
T ss_pred hhhHHhhhHhhc--CCcchhhhhHHHH---HHHHHhCCCHhHhh--------hcccc---ccCCCCCcHH----------
Confidence 455666677777 5566888887653 45677777666531 12221 1233455543
Q ss_pred CceEEEEEeccccc--ccccCCCCceEEEEecCCCC---------------------------c--c-ccccccCCCCCc
Q 000124 2009 PGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPP---------------------------R--Q-TKVVSHSISPEW 2056 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~---------------------------~--~-t~~~~~~~~p~w 2056 (2138)
|-|.+.+|.|+ ++.+|-.||||.+-|--|-+ | | |.|-+|++||.|
T Consensus 116 ---l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW 192 (1103)
T KOG1328|consen 116 ---LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKW 192 (1103)
T ss_pred ---HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcch
Confidence 44556688888 88888899999876532211 1 3 889999999999
Q ss_pred cccceeeecCCCCCCeEEEEEeecCCC-------------------------------------CCcccceEEEEeccee
Q 000124 2057 KEGFTWAFDVPPKGQKLHIICKSKNTF-------------------------------------GKSTLGKVTIQIDKVV 2099 (2138)
Q Consensus 2057 ~~~f~~~~~~~p~~~~l~~~~~~~~~~-------------------------------------~k~~~g~~~~~~~~v~ 2099 (2138)
+|.|+|.+||- --|.+|+.+||||-= -.+.||-+.|.+..|=
T Consensus 193 ~EkF~F~IeDv-~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 193 SEKFQFTIEDV-QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhheeeehhcc-ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 99999999998 789999999999531 1578999999999887
Q ss_pred ecceecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2100 TEGVYSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2100 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
..| ...+|+|.+.+.|+-..|...+.+.-|-+
T Consensus 272 ~~G-ld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 272 PDG-LDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred cch-HHHHhccCcccccccccceEEEEEEEeee
Confidence 777 46799999998886555555466655443
No 205
>PLN02352 phospholipase D epsilon
Probab=97.29 E-value=0.00068 Score=90.00 Aligned_cols=117 Identities=25% Similarity=0.380 Sum_probs=88.5
Q ss_pred CCceEEEEEecccccccccC-------CCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeec
Q 000124 2008 LPGCLTVTIKRGNNLKQTMG-------TTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSK 2080 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~ 2080 (2138)
|-|.|-|||.+|.-+.+.+. +.+|||-+.+++..--+| +++-||+|+|.|.--+.-+ ....+++.||+
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKT- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEec-
Confidence 34999999999975533211 229999999944332257 6677999999999988866 54478999988
Q ss_pred CCCCCcccceEEEEecceeecce-ecceeecCCCCCCCCCccceEEEEEecCC
Q 000124 2081 NTFGKSTLGKVTIQIDKVVTEGV-YSGLFNLNHDNNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2081 ~~~~k~~~g~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~w~~~ 2132 (2138)
|-+-+|++.|...+++.-+. +.++|.+.+++.|--+--++.+.+|..+-
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 67889999999999988656 99999999995442222366678887764
No 206
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.1 Score=62.62 Aligned_cols=355 Identities=16% Similarity=0.158 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHhhcCch---hHHH--HhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHH--
Q 000124 406 LVQERVLEAMASLYGNIF---LSQW--VSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQL-- 478 (2138)
Q Consensus 406 ~vr~~Aa~AL~~L~~n~~---~~~~--L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~-- 478 (2138)
.++.-++..++.+..+.+ +... +...+..+.++..+...+.++-..|...+..++.. +..-..|.+..-...
T Consensus 97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlh 175 (524)
T KOG4413|consen 97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLH 175 (524)
T ss_pred hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHH
Confidence 478888888888866543 2222 33667788999999999999999999999999887 455556665554433
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhcCChhHHHHHHHc
Q 000124 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESA 557 (2138)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~ 557 (2138)
+..+...-+.-+|......+..+.+-+++.-......|.+..|..-|+. .|.-++..+.+....|+. -+..++++.+.
T Consensus 176 lrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQe 254 (524)
T KOG4413|consen 176 LRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQE 254 (524)
T ss_pred HhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-Hhhhhhhcchh
Confidence 3333334455677788888888887677776667778888887777776 477778888888888875 45567888889
Q ss_pred CCcchhhhccc--cCChhHHHHHHHHHHHHHHhh------c-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000124 558 GAVPAFLWLLK--SGGPKGQDASAMALTKLIRAA------D-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2138)
Q Consensus 558 GaI~aLv~LLk--S~~~evq~~Aa~AL~nLs~~~------e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~ 622 (2138)
|.|..++.+.. +.+|--+..+....+.+.... + .-.|+...++...+|++....+..++|.+.+.
T Consensus 255 glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 255 GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 98888887764 345655565665555554331 1 12345566777888999999999999988765
Q ss_pred hcchHHHHhhhcccchhhHHHH-hhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHH
Q 000124 623 ALQEDLVQKGSAANKGLRSLVQ-VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSAR 701 (2138)
Q Consensus 623 ~~~~d~v~~~l~~~GaI~aLV~-LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ 701 (2138)
....+.+.+. .......++. ........-++.+..+|.+++.....-.+.+ .||....+. +
T Consensus 335 teGadlllkT--gppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqi-------------tDgkaeerl---r 396 (524)
T KOG4413|consen 335 TEGADLLLKT--GPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQI-------------TDGKAEERL---R 396 (524)
T ss_pred cchhHHHhcc--CChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhc-------------cccHHHHHH---H
Confidence 5554443322 0111222222 2222233445667777777765211111111 122121111 1
Q ss_pred HHH--HhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHh-cCcHHHHHHHHhCC-
Q 000124 702 ALG--ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLL-EDVVSALTRVLAEG- 777 (2138)
Q Consensus 702 ALa--nLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~-~g~L~~LV~LL~~~- 777 (2138)
++. ..+++.. -.-...+...+..+.++++-.+..++..++..|=....|.. ++.+...+.---+.
T Consensus 397 clifdaaaqstk-----------ldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEha 465 (524)
T KOG4413|consen 397 CLIFDAAAQSTK-----------LDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHA 465 (524)
T ss_pred HHHHHHHhhccC-----------CChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhH
Confidence 111 1111111 11223355667778899999999999999988776666654 44443333221111
Q ss_pred --CHHHHHHHHHHHHH
Q 000124 778 --TSEGKKNASRALHQ 791 (2138)
Q Consensus 778 --~~~Vr~~Aa~AL~n 791 (2138)
..+-|.+.+.++++
T Consensus 466 KaakdAkYeccKAiae 481 (524)
T KOG4413|consen 466 KAAKDAKYECCKAIAE 481 (524)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 12345566666654
No 207
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.19 E-value=0.0028 Score=67.44 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=108.0
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK 472 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e 472 (2138)
..|+.-+....+.+.|+.+..-|+|.+.++.++..+.+.+.+...++-+...++...+.++..|+++|-+ +.+...|.+
T Consensus 19 q~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I~e 97 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFIRE 97 (173)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHHHH
Confidence 4455545555555688999999999999999999999999999999999999999999999999999998 788899999
Q ss_pred chhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHh
Q 000124 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL 525 (2138)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LL 525 (2138)
.+|+|.++..+.++.+.+...++..+..|+......|..+.. |++++.+
T Consensus 98 a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v 146 (173)
T KOG4646|consen 98 ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV 146 (173)
T ss_pred hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence 999999999999999999999999999999865555555533 4555544
No 208
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.41 Score=63.68 Aligned_cols=427 Identities=19% Similarity=0.164 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh
Q 000124 55 PQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLL 134 (2138)
Q Consensus 55 ~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL 134 (2138)
.+-|.-.--+|.+.+...+..- -+++..++.=..++++.+|..|.+.++.+--+.-. .-.+.+|.+++
T Consensus 63 lelKKlvyLYl~nYa~~~P~~a------~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~------ey~~~Pl~~~l 130 (734)
T KOG1061|consen 63 LELKKLVYLYLMNYAKGKPDLA------ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT------EYLCDPLLKCL 130 (734)
T ss_pred chHHHHHHHHHHHhhccCchHH------HhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH------HHHHHHHHHhc
Confidence 3434444444555554432211 24567777777788999999999888777322211 12358999999
Q ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHH
Q 000124 135 KSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE 214 (2138)
Q Consensus 135 ~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e 214 (2138)
+++++.+|..++-....+-.. +.+.+...|.++.|.+++.+.+ +.+..+|+.+|..+...+.+.......
T Consensus 131 ~d~~~yvRktaa~~vakl~~~-------~~~~~~~~gl~~~L~~ll~D~~---p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 131 KDDDPYVRKTAAVCVAKLFDI-------DPDLVEDSGLVDALKDLLSDSN---PMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred cCCChhHHHHHHHHHHHhhcC-------ChhhccccchhHHHHHHhcCCC---chHHHHHHHHHHHHHHhCCCCCccccc
Confidence 999999999999888888752 2467888999999999998543 568889999999998766431010000
Q ss_pred hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHH
Q 000124 215 AGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAK 294 (2138)
Q Consensus 215 ~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~R 294 (2138)
.--+..++..+..-++=-| +.+|-+++...+....+ ....+..+...+++.+ ..+...+...+.++...-+. .
T Consensus 201 ~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~e--a~~i~~r~~p~Lqh~n-~avvlsavKv~l~~~~~~~~-~ 273 (734)
T KOG1061|consen 201 PQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSRE--AEDICERLTPRLQHAN-SAVVLSAVKVILQLVKYLKQ-V 273 (734)
T ss_pred HHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchh--HHHHHHHhhhhhccCC-cceEeehHHHHHHHHHHHHH-H
Confidence 0012222222222211122 23333444222221111 1123444444455433 34555555555555543222 2
Q ss_pred HHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHH
Q 000124 295 KAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMV 374 (2138)
Q Consensus 295 k~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~ 374 (2138)
....-...-+.++.++..++ + +| ..+|.|+. ....+
T Consensus 274 ~~~~~~K~~~pl~tlls~~~-e-~q-----------yvaLrNi~-------------------------------lil~~ 309 (734)
T KOG1061|consen 274 NELLFKKVAPPLVTLLSSES-E-IQ-----------YVALRNIN-------------------------------LILQK 309 (734)
T ss_pred HHHHHHHhcccceeeecccc-h-hh-----------HHHHhhHH-------------------------------HHHHh
Confidence 22221223334444444433 1 11 12333332 11111
Q ss_pred hhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHH
Q 000124 375 FEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLIL 454 (2138)
Q Consensus 375 l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~ 454 (2138)
.+ +.+.. ...+-+.+..++--++..=..++..++...-+.+.+ .-+......-+.+....++.
T Consensus 310 ~p-------~~~~~----~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl------~El~eYatevD~~fvrkaIr 372 (734)
T KOG1061|consen 310 RP-------EILKV----EIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVL------AELKEYATEVDVDFVRKAVR 372 (734)
T ss_pred Ch-------HHHHh----HhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHH------HHHHHhhhhhCHHHHHHHHH
Confidence 00 01100 111112223333234444444455444333222211 11223334457788889999
Q ss_pred HHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh-CCHHHH
Q 000124 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAR 533 (2138)
Q Consensus 455 aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks-~d~~vr 533 (2138)
++++++..-++. .+.|+.|+++++..-.-+...++..++.+.+..+..-..+ ++.+..-+.+ .+|+.|
T Consensus 373 aig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~v-----v~~l~~~~~sl~epeak 441 (734)
T KOG1061|consen 373 AIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESV-----VAILCENLDSLQEPEAK 441 (734)
T ss_pred Hhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhh-----hhhhcccccccCChHHH
Confidence 999988763322 5678999999987766677777788888887555443322 2222222333 378888
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 534 EVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 534 e~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
..-.|.++.-+..-++.-. -+..+++-.++...++|..-..+...++-.
T Consensus 442 ~amiWilg~y~~~i~~a~e------lL~~f~en~~dE~~~Vql~LLta~ik~Fl~ 490 (734)
T KOG1061|consen 442 AALIWILGEYAERIENALE------LLESFLENFKDETAEVQLELLTAAIKLFLK 490 (734)
T ss_pred HHHHHHHhhhhhccCcHHH------HHHHHHhhcccchHHHHHHHHHHHHHHHhc
Confidence 8888888877653222211 233344555666777877777777666544
No 209
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.33 Score=63.67 Aligned_cols=322 Identities=12% Similarity=0.095 Sum_probs=188.5
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcC-chhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhh
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n-~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~ 471 (2138)
+-++.|+.+..+. +|..|+..+..++-. ++ .-+.+.+-|+.-|...++.++-.|+..++.|++.+|.+.-.+
T Consensus 147 ~Dv~tLL~sskpY-vRKkAIl~lykvFLkYPe-----Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L- 219 (877)
T KOG1059|consen 147 DDVFTLLNSSKPY-VRKKAILLLYKVFLKYPE-----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL- 219 (877)
T ss_pred HHHHHHHhcCchH-HHHHHHHHHHHHHHhhhH-----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-
Confidence 4456677777665 888888888776422 22 113456778999999999999999999999999988877655
Q ss_pred hchhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHH-HHHHHHHHHH--HHhcCC
Q 000124 472 KREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQK-AREVAAHVLW--ILCCHS 547 (2138)
Q Consensus 472 e~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~-vre~Aa~aL~--nLs~~s 547 (2138)
-|.+..++.+. |.=+....+..+++|+.-.+.-. ...+++|..++++.... +.-.|..++- ++....
T Consensus 220 ----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 220 ----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred ----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 37788877644 44466677788888887444322 34688999998876432 2222222111 232211
Q ss_pred -hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh
Q 000124 548 -EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMA 623 (2138)
Q Consensus 548 -d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e---~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~ 623 (2138)
+..... .-++..|-.++.+.++.+++-.+-+++.+..... ..--..++++|.+.|++++..+.+.|..+....
T Consensus 291 ~d~~asi---qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 291 SDHSASI---QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKK 367 (877)
T ss_pred CCcHHHH---HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhh
Confidence 111111 1245666678889999999999999999886522 122356788999999999999888887765322
Q ss_pred cchHHHHhhhcccchhhHHHHhh-cCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC-CHHHHHHHhcc-CCHHHHHHHH
Q 000124 624 LQEDLVQKGSAANKGLRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDE-IVNPCMRLLTS-NTQMVATQSA 700 (2138)
Q Consensus 624 ~~~d~v~~~l~~~GaI~aLV~LL-ks~s~evre~Aa~ALanL~s~~~e~r~~Ive~G-aV~~Lv~LL~d-gs~~Vk~~AA 700 (2138)
.+.. .++.|..-+ .++....|...+.-+-.+|+ ..+-..+.+-. .+..|+.+.+- ++..+..-+.
T Consensus 368 ----Nl~e------IVk~LM~~~~~ae~t~yrdell~~II~iCS--~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~e 435 (877)
T KOG1059|consen 368 ----NLME------IVKTLMKHVEKAEGTNYRDELLTRIISICS--QSNYQYITDFEWYLSVLVELARLEGTRHGSLIAE 435 (877)
T ss_pred ----hHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHHHhccccchhhHHHH
Confidence 2222 144444433 33333555555555555554 12222222221 23445555542 3444444333
Q ss_pred HHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcC-----------CHHHHHHHHHHHHHhhCC
Q 000124 701 RALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS-----------SIDAAETAVAALANLLSD 754 (2138)
Q Consensus 701 ~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~-----------s~~Vr~eAl~ALaNLa~~ 754 (2138)
+ +.+++. |..-+....|.....++.+. -.+|-.+|+|+++-.+..
T Consensus 436 Q-i~Dv~i--------RV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ 491 (877)
T KOG1059|consen 436 Q-IIDVAI--------RVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEF 491 (877)
T ss_pred H-HHHHhe--------echhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHH
Confidence 2 233332 11112223344444444321 246666788888877653
No 210
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.04 E-value=0.00051 Score=91.30 Aligned_cols=145 Identities=24% Similarity=0.293 Sum_probs=107.1
Q ss_pred hhhhhHHHhhhccchhHhhhhHHHHHHHHhhhcCCCcHHHH-hHHHHHHhhhhhHHHHHHHhCCCchhhhhhhhhhcCCc
Q 000124 1932 TLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVA-KSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPG 2010 (2138)
Q Consensus 1932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 2010 (2138)
|+--|-|..-=|-|+-+--|+ ++.|+.-|-+|+ +-+ +-++-=-|
T Consensus 1480 TFFhpllrDe~~~gsp~~~~~--------~~~ps~~p~~iggqV~---------------------------LsIsY~~~ 1524 (1639)
T KOG0905|consen 1480 TFFHPLLRDEKKEGSPAIKES--------KGMPSRNPGEIGGQVK---------------------------LSISYNNG 1524 (1639)
T ss_pred eeechhhhhhhhcCCcccccc--------ccCCCCCccccCceEE---------------------------EEEEEcCc
Confidence 444455555444454433332 577888887776 222 22233379
Q ss_pred eEEEEEeccccc--ccccCCCCceEEEEecCCCCc----cccccccCCCCCccccceeeecCCCCC----CeEEEEEeec
Q 000124 2011 CLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPR----QTKVVSHSISPEWKEGFTWAFDVPPKG----QKLHIICKSK 2080 (2138)
Q Consensus 2011 ~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~t~~~~~~~~p~w~~~f~~~~~~~p~~----~~l~~~~~~~ 2080 (2138)
.|+|.|+-+.+| -+----+||||+..+.--+.| |||||.|++||-+||..-|. .=|++ -.|.+.|||+
T Consensus 1525 ~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~--g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1525 TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYD--GFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred eEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeec--CCchhhhhhheeeeeeecc
Confidence 999999999998 233267899999999555444 69999999999999987664 33444 3689999999
Q ss_pred CCC-CCcccceEEEEecceeecceecceeecCCC
Q 000124 2081 NTF-GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2081 ~~~-~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
+++ -+..||-|+|.|.+|=.-.+--++|.|-..
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 888 778999999999999999888899998665
No 211
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0068 Score=77.74 Aligned_cols=294 Identities=15% Similarity=0.121 Sum_probs=184.8
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCC------hh
Q 000124 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS------ED 549 (2138)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~s------d~ 549 (2138)
...|+.+..+.+..+|..|+.+|..|+....-.+ -.....++++.+.+.++|..|...++-.+... +.
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 3448888889999999999999988876222111 13456678888999999999876666554421 11
Q ss_pred HHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh------
Q 000124 550 IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMA------ 623 (2138)
Q Consensus 550 ~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~------ 623 (2138)
.+..+ ...+...++..+.+.+..++-.|+.+|+.+....+.=+...|-+=+-++... +..+-+.=..+.+..
T Consensus 274 ~e~kl-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRR-kr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 274 EEEKL-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRR-KRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhh-HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhh-hhhcccchHHHHhcCCcccCc
Confidence 11111 1345667788888999999999999999887654321111221111110000 000000000010000
Q ss_pred --------cchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHH
Q 000124 624 --------LQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMV 695 (2138)
Q Consensus 624 --------~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~V 695 (2138)
...|.-...+..+|+-.++|.-++++--++|++|+..++.|+.++|.... ..+.-|+.++.|.-+.+
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVV 426 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHH
Confidence 00111112356788888889888877889999999999999987776543 35678999999999999
Q ss_pred HHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHh
Q 000124 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA 775 (2138)
Q Consensus 696 k~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~ 775 (2138)
|..|..+|..++.+.. +++.-++.+++.|.+.+.++|++.-..|++.--.+...-.+.-.+.+.-|..
T Consensus 427 RL~ai~aL~~Is~~l~---------i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~k--- 494 (823)
T KOG2259|consen 427 RLKAIFALTMISVHLA---------IREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGK--- 494 (823)
T ss_pred HHHHHHHHHHHHHHhe---------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh---
Confidence 9999999999986321 2345678889999999999999888888876433322222221122222222
Q ss_pred CCCHHHHHHHHHHHHHhhhcC
Q 000124 776 EGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 776 ~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
-|+-|...-.|+.+++++.
T Consensus 495 --yPqDrd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 495 --YPQDRDEILRCMGRIGQNH 513 (823)
T ss_pred --CCCCcHHHHHHHHHHhccC
Confidence 2334455666777777765
No 212
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.057 Score=71.38 Aligned_cols=433 Identities=16% Similarity=0.158 Sum_probs=242.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcC
Q 000124 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516 (2138)
Q Consensus 437 LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aG 516 (2138)
++......+-+.++-.-..+.+-+...++.. .+.+..++.=.++.++.+|..|++.++.+... .. -.-
T Consensus 54 vvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i-----~ey 121 (734)
T KOG1061|consen 54 VVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KI-----TEY 121 (734)
T ss_pred HHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HH-----HHH
Confidence 4555566666666666677777776655432 34567777777888999999998887776542 11 123
Q ss_pred CchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc------
Q 000124 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD------ 590 (2138)
Q Consensus 517 aIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e------ 590 (2138)
...++.+.+++.++.+|..++-...++-.. ..+...+.|.++.|-+++.+.+|.+..+|..+|..+.....
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~ 198 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE 198 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence 567889999999999999999998888543 24456678999999999999999999999999999986642
Q ss_pred --hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 000124 591 --SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMR 668 (2138)
Q Consensus 591 --~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~ 668 (2138)
...+..++..+..-.+--+....+++.. ..+.++ . .....+..+...+++.+..+...+..++.++....
T Consensus 199 l~~~~~~~lL~al~ec~EW~qi~IL~~l~~---y~p~d~--~---ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 199 LNPQLINKLLEALNECTEWGQIFILDCLAE---YVPKDS--R---EAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHh---cCCCCc--h---hHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 1234445555544333333333333332 211111 0 01123566666777778877777888877776633
Q ss_pred hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000124 669 QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2138)
Q Consensus 669 ~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~AL 748 (2138)
+. .....-...-++|+.++.... .++--|.+-+.-+..+.+. +.....-.-+++. .+...++.+=+.++
T Consensus 271 ~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-------~~~~~~~~Ff~ky--nDPiYvK~eKleil 339 (734)
T KOG1061|consen 271 KQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-------ILKVEIKVFFCKY--NDPIYVKLEKLEIL 339 (734)
T ss_pred HH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-------HHHhHhHeeeeec--CCchhhHHHHHHHH
Confidence 33 233333455567777777666 5555444433333322221 1111110001111 12345666666666
Q ss_pred HHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchh
Q 000124 749 ANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTD 828 (2138)
Q Consensus 749 aNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~ 828 (2138)
..++.+....+ .+.-+..+..+.+.+.-+++++|+++++...+ + ..+.+..|++++....+..
T Consensus 340 ~~la~~~nl~q------vl~El~eYatevD~~fvrkaIraig~~aik~e--~-------~~~cv~~lLell~~~~~yv-- 402 (734)
T KOG1061|consen 340 IELANDANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLAIKAE--Q-------SNDCVSILLELLETKVDYV-- 402 (734)
T ss_pred HHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh--h-------hhhhHHHHHHHHhhcccce--
Confidence 66664433222 44456666666677777777777777776421 0 0345666777776433332
Q ss_pred HHHHHHHHHHHhhc--c-----------------cCCcccCCcccccc---cCCCc---hHHHHHhhhcCChHHHHHHHH
Q 000124 829 VADALEVVALLART--K-----------------QGLNFTYPPWAALA---EVPSS---IEPLVCCLAEGPPPLQDKAIE 883 (2138)
Q Consensus 829 ~~~AL~ALa~La~~--~-----------------~~~~~i~~~~~~~~---~~~~~---L~~Lv~ll~~~~~~vq~~Aie 883 (2138)
..++...+..+-+- . +...+..-.|..+. +.+.+ ++.+++-..+++..+|-.=+.
T Consensus 403 vqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLt 482 (734)
T KOG1061|consen 403 VQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLT 482 (734)
T ss_pred eeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHH
Confidence 33333333333320 0 00000011233322 12333 334444444555556655555
Q ss_pred HHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhh
Q 000124 884 ILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGG 926 (2138)
Q Consensus 884 iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~ 926 (2138)
+.-+++...|. +++..+-..|..++-.++..++|--|
T Consensus 483 a~ik~Fl~~p~------~tq~~l~~vL~~~~~d~~~~dlrDr~ 519 (734)
T KOG1061|consen 483 AAIKLFLKKPT------ETQELLQGVLPLATADTDNPDLRDRG 519 (734)
T ss_pred HHHHHHhcCCc------cHHHHHHHHHhhhhccccChhhhhhH
Confidence 55555555442 23334445566666677776766544
No 213
>PLN02964 phosphatidylserine decarboxylase
Probab=96.99 E-value=0.00055 Score=90.32 Aligned_cols=105 Identities=13% Similarity=0.174 Sum_probs=87.3
Q ss_pred CCceEEEEEecccccccccCCCCceEEEEecCCCCc-cccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC-CC
Q 000124 2008 LPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPR-QTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF-GK 2085 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~-~k 2085 (2138)
.-|...+|+++|+ |.+.|||..+.. =|++- ||-..++++||+||++-.|.++.--.|= .|+.||+++.| ..
T Consensus 52 ~~~~~~~~~~~~~-----~~~~~~~~~~~~-~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~n 124 (644)
T PLN02964 52 FSGIALLTLVGAE-----MKFKDKWLACVS-FGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHL-ARISVFETNRLSKN 124 (644)
T ss_pred ccCeEEEEeehhh-----hccCCcEEEEEE-ecceeeeeccccccCCcccchhhceEeccCCcce-EEEEEEecCCCCHH
Confidence 3578899999988 788899877665 46554 7999999999999999999999877776 59999999999 55
Q ss_pred cccceEEEEecceeec--ceecceeecCCCCCCCCCc
Q 000124 2086 STLGKVTIQIDKVVTE--GVYSGLFNLNHDNNKDSSS 2120 (2138)
Q Consensus 2086 ~~~g~~~~~~~~v~~~--~~~~~~~~l~~~~~~~~~~ 2120 (2138)
+..|+|.+.|++.... .++.+-|.+.|. +++|++
T Consensus 125 ~lv~~~e~~~t~f~~kqi~elkeaF~lfD~-dgdG~i 160 (644)
T PLN02964 125 TLVGYCELDLFDFVTQEPESACESFDLLDP-SSSNKV 160 (644)
T ss_pred HhhhheeecHhhccHHHHHHHHHHHHHHCC-CCCCcC
Confidence 5678999999998874 557888998888 677764
No 214
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=1.9 Score=57.62 Aligned_cols=281 Identities=15% Similarity=0.088 Sum_probs=159.1
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 000124 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE 555 (2138)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~ 555 (2138)
.+.+-.++++..+.+...++.+++++...... . + ..++..|--++.++....|..|..+|..++......-.
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~-l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--- 318 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--E-L--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--- 318 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHh--h-c--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc---
Confidence 34455677788888999999999988763221 1 1 12555566667788889999999999998763221000
Q ss_pred HcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHh---cCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000124 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLALL---LGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2138)
Q Consensus 556 e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-~~aI~~Li~LL---~~~d~~V~~~A~~AL~~La~~~~~~d~v~~ 631 (2138)
.+=.-|-.+..+.+-.+-..|..+|..=..... ...+.+...++ .++..-+...+.++|+... +.+
T Consensus 319 --~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p~k----- 388 (865)
T KOG1078|consen 319 --VCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---PRK----- 388 (865)
T ss_pred --ccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---cHH-----
Confidence 000011122223333333333333322211100 11122222222 2333333344444444322 111
Q ss_pred hhcccchhhHHHHhhcC-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 000124 632 GSAANKGLRSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 632 ~l~~~GaI~aLV~LLks-~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~ 710 (2138)
..+.+..|..+|+. +.-+-+...+.++..+...+++.++ -++..|+.+..|..- ..-+.+.|+-|+...
T Consensus 389 ---~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~--~~i~~rILhlLG~Eg 458 (865)
T KOG1078|consen 389 ---HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEF--TQIAVRILHLLGKEG 458 (865)
T ss_pred ---HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccc--hHHHHHHHHHHhccC
Confidence 12235666666654 3556677777777777665555443 355667777766432 234566777777633
Q ss_pred CcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
|.. ..-...++.+.+.+.-.+.-+|.+|+.+|+++.. ++.. .+.....+.+++.+.++++|+.|...|
T Consensus 459 P~a------~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l 527 (865)
T KOG1078|consen 459 PKA------PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYL 527 (865)
T ss_pred CCC------CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHH
Confidence 321 1123356667777777888999999999999973 3322 234455677899999999999999999
Q ss_pred HHhhhc
Q 000124 790 HQLLKH 795 (2138)
Q Consensus 790 ~nL~~~ 795 (2138)
.++-..
T Consensus 528 ~~l~~~ 533 (865)
T KOG1078|consen 528 KNLEEK 533 (865)
T ss_pred HHhhhh
Confidence 988743
No 215
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.015 Score=74.82 Aligned_cols=216 Identities=11% Similarity=0.100 Sum_probs=114.3
Q ss_pred hhhccccCChhHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh--cchHHHHhhhcccch
Q 000124 563 FLWLLKSGGPKGQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKAHVIKVLGHVLTMA--LQEDLVQKGSAANKG 638 (2138)
Q Consensus 563 Lv~LLkS~~~evq~~Aa~AL~nLs~~~e--~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~--~~~d~v~~~l~~~Ga 638 (2138)
|..+..+.++.++.+|+.+|..|.+.-. .......++++.+++..|+..|.+.+......- +.+......-....+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 4445555666666666666655554211 123455666667776667666666555544321 111110111111234
Q ss_pred hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhh----------------------------------------------
Q 000124 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC---------------------------------------------- 672 (2138)
Q Consensus 639 I~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r---------------------------------------------- 672 (2138)
...+...+.+.+..+|-.|+.+|..+..-..+..
T Consensus 283 F~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~ 362 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEED 362 (823)
T ss_pred HHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhc
Confidence 5566666666666666666666665533211111
Q ss_pred ----hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000124 673 ----GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2138)
Q Consensus 673 ----~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~AL 748 (2138)
..++..|+..+++.-|.|.=-+||++|...++.|+.+.|. .. ...+.-|+++++++..+||..|..+|
T Consensus 363 d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---FA-----~~aldfLvDMfNDE~~~VRL~ai~aL 434 (823)
T KOG2259|consen 363 DEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---FA-----VRALDFLVDMFNDEIEVVRLKAIFAL 434 (823)
T ss_pred cccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC---cH-----HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1233344444455444444445777777777777664333 11 12456667777777677777777777
Q ss_pred HHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHH
Q 000124 749 ANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791 (2138)
Q Consensus 749 aNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~n 791 (2138)
..++.+ ..+++.-++.+...+.+.++++|+..-..|++
T Consensus 435 ~~Is~~-----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 435 TMISVH-----LAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHH-----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666543 12233445566666666677776665555544
No 216
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.92 E-value=0.057 Score=67.36 Aligned_cols=275 Identities=16% Similarity=0.126 Sum_probs=143.8
Q ss_pred ccCCHHHHHHHHHHHHHhhhc-----cchhhHHhhhchhHHHH-------HHHhcCCchhhHHHHHHHHHHHhhcCchhH
Q 000124 442 TMATADVREYLILSLTKLCRR-----EVGIWEAIGKREGIQLL-------ISLLGLSSEQHQEYAVQLIAILTEQVDDSK 509 (2138)
Q Consensus 442 ~sss~evq~~Aa~aL~~Ls~~-----s~~~~~~I~e~ggIp~L-------V~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r 509 (2138)
....+.++.+++..+..+... .++.++.-...+..... -..+.+..+..+...+.++.+++.....+
T Consensus 305 ~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~- 383 (728)
T KOG4535|consen 305 GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN- 383 (728)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC-
Confidence 456788899988887765432 22222211112211110 01233444556667777777776421110
Q ss_pred HHHHhcCCchHHHHHhhh----CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHH
Q 000124 510 WAITAAGGIPPLVQLLEA----GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL 585 (2138)
Q Consensus 510 ~~I~~aGaIp~LV~LLks----~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nL 585 (2138)
...|--.....++.. .+.-++..|...+..+..|..-.....--..+...+...+.+..-..|.+++|+++|+
T Consensus 384 ---lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 384 ---LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred ---CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence 011111111122211 1222444455555555444332222222233444445555666677889999999998
Q ss_pred HHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhh---cCCCHHHHHHHHHHHH
Q 000124 586 IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL---NSSNEENQEYAASVLA 662 (2138)
Q Consensus 586 s~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LL---ks~s~evre~Aa~ALa 662 (2138)
+.. |.++.+.++..+.++.+.+. ..+++.. ...+..++.++.++|.
T Consensus 461 TdA------------L~~~~Ps~~s~~eR~sg~ll-------------------~~~~~~A~~~~Ad~dkV~~navraLg 509 (728)
T KOG4535|consen 461 TDA------------LIVNMPTPDSFQERFSGLLL-------------------LKMLRSAIEASADKDKVKSNAVRALG 509 (728)
T ss_pred HHH------------HHcCCCCchHHHHHHHHHHH-------------------HHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 733 44455666666666655432 2222222 2247889999999999
Q ss_pred HHhhcChhh----hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc-CC
Q 000124 663 DLFSMRQDI----CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SS 737 (2138)
Q Consensus 663 nL~s~~~e~----r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~s 737 (2138)
|+...-... -..+.+....+-+....-.+.-.||-+|+.+++||..+ +.. .....-+..-+.+.|..|+.+ .+
T Consensus 510 nllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn-~a~-~lq~~~wA~~~F~~L~~Lv~~~~N 587 (728)
T KOG4535|consen 510 NLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN-PAL-PLQTAPWASQAFNALTSLVTSCKN 587 (728)
T ss_pred hHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC-ccc-cccCCCchHHHHHHHHHHHHHhcc
Confidence 987631111 11112222222223334456778999999999999872 110 111111223355667777765 67
Q ss_pred HHHHHHHHHHHHHhhC
Q 000124 738 IDAAETAVAALANLLS 753 (2138)
Q Consensus 738 ~~Vr~eAl~ALaNLa~ 753 (2138)
..||..|+.+|.--..
T Consensus 588 FKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 588 FKVRIRAAAALSVPGK 603 (728)
T ss_pred ceEeehhhhhhcCCCC
Confidence 8899999999976554
No 217
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.045 Score=65.63 Aligned_cols=287 Identities=17% Similarity=0.116 Sum_probs=164.0
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000124 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVES 556 (2138)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e 556 (2138)
..++.++.+.++.+|..|+..+..++.. +.....-.....++.+.++++...+ -+.|+.+|.|++. +...++.+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHH
Confidence 4578899999999999999999998874 2111111233456778888877666 6788999999998 4555666555
Q ss_pred cCCcchhhhccccCChhHHHHHHHHHHHHHHhhchh----------hHHHHHHHhc---CCCcc---hHHHHHHHHHHHH
Q 000124 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSA----------TINQLLALLL---GDSPS---SKAHVIKVLGHVL 620 (2138)
Q Consensus 557 ~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~----------aI~~Li~LL~---~~d~~---V~~~A~~AL~~La 620 (2138)
. .+..++..+.+....+-...+..|.|++..++.- .-..++++.. +.+.. -..+.+..+.++.
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 5 6667777777777778888899999998764200 0022333332 22111 1223333444443
Q ss_pred hhhcchHHHHhhhcccc--hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000124 621 TMALQEDLVQKGSAANK--GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~G--aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~ 698 (2138)
+... -+..+.+.. ..+.+..+-..++.--|...++.|.|.|. +..+...+...+ +.-|..+
T Consensus 161 ~~~~----gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cF-d~~~h~~lL~e~-~~lLp~i----------- 223 (353)
T KOG2973|consen 161 QFEA----GRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCF-DAKLHEVLLDES-INLLPAI----------- 223 (353)
T ss_pred hhhh----hhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhc-cchhHHHHhcch-HHHHHHH-----------
Confidence 3222 222222222 23444444442333345578889999888 555555544422 2222221
Q ss_pred HHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh-----cCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHH
Q 000124 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-----TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRV 773 (2138)
Q Consensus 699 AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~-----s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~L 773 (2138)
|.-++.. .+.++.- ..-++.=+++|. .++++++..-+++|..|+.....|+.+...|+-|.+-.+
T Consensus 224 ----LlPlagp-ee~sEEd-----m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilREl 293 (353)
T KOG2973|consen 224 ----LLPLAGP-EELSEED-----MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILREL 293 (353)
T ss_pred ----HhhcCCc-cccCHHH-----HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHH
Confidence 2223220 0101111 112222225554 368999999999999999888888777665555544443
Q ss_pred H-hCCCHHHHHHHHHHHHHhhhc
Q 000124 774 L-AEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 774 L-~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
- ...++++++.+-.....|...
T Consensus 294 hk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 294 HKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred hcCCCcHHHHHHHHHHHHHHHhc
Confidence 2 234666666655555545543
No 218
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.85 E-value=0.0023 Score=63.43 Aligned_cols=86 Identities=26% Similarity=0.344 Sum_probs=71.6
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHH
Q 000124 681 VNPCMRLL-TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAA 759 (2138)
Q Consensus 681 V~~Lv~LL-~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~ 759 (2138)
++.|++.| ++.++.+|..|+++|+++.. ..+++.|+.+++++++.+|..|+.+|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--------------PEAIPALIELLKDEDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence 57889988 88999999999999996632 136899999999999999999999999773
Q ss_pred HHHhcCcHHHHHHHHhCC-CHHHHHHHHHHHH
Q 000124 760 EVLLEDVVSALTRVLAEG-TSEGKKNASRALH 790 (2138)
Q Consensus 760 ~Ii~~g~L~~LV~LL~~~-~~~Vr~~Aa~AL~ 790 (2138)
.+.+++.|.+++.++ +..+|..|+.+|+
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 456899999988876 5667999998874
No 219
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.82 E-value=0.0024 Score=63.29 Aligned_cols=86 Identities=30% Similarity=0.404 Sum_probs=70.7
Q ss_pred hhHHHHhh-cCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchh
Q 000124 639 LRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2138)
Q Consensus 639 I~aLV~LL-ks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r 717 (2138)
++.|++.+ +++++.+|..++.+|.++.. ..+++.|+.++++.++.+|..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 46788888 77899999999999996643 3568999999999999999999999998852
Q ss_pred hhHHhcCChhhHHhhhhcC-CHHHHHHHHHHHH
Q 000124 718 MSYIAEGDVKPLIKLAKTS-SIDAAETAVAALA 749 (2138)
Q Consensus 718 ~~I~~~G~V~~Lv~LL~s~-s~~Vr~eAl~ALa 749 (2138)
...++.|.+++.++ +..++..|+.+|+
T Consensus 61 -----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23789999988774 5667889998885
No 220
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=2 Score=57.40 Aligned_cols=460 Identities=13% Similarity=0.082 Sum_probs=241.4
Q ss_pred HHHHHHHHHhhcCchhHHHHhhhch---HHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcC
Q 000124 409 ERVLEAMASLYGNIFLSQWVSHAEA---KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2138)
Q Consensus 409 ~~Aa~AL~~L~~n~~~~~~L~e~~g---I~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s 485 (2138)
..|...|.+|..=-.-+..+.+.++ .-.+..++++.+...++..-.++..++.-.++... +...+..-...
T Consensus 38 r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvii------vtsslmkD~t~ 111 (865)
T KOG1078|consen 38 RKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVII------VTSSLMKDMTG 111 (865)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhhh------hhHHHHhhccC
Confidence 5566666666321111122333333 33355677888888777777777777765333211 23344444555
Q ss_pred CchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh----hCCHHHHHHH-HHHHHHHhcCChhHHHHHHHcCCc
Q 000124 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE----AGSQKAREVA-AHVLWILCCHSEDIRACVESAGAV 560 (2138)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk----s~d~~vre~A-a~aL~nLs~~sd~~r~~I~e~GaI 560 (2138)
.++..|-.|++.|+.+... +-+...-+.++ +..+.+...| +..+..|....+..++... ++.
T Consensus 112 ~~d~yr~~AiR~L~~I~d~-----------~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~n--eiq 178 (865)
T KOG1078|consen 112 KEDLYRAAAIRALCSIIDG-----------TMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWAN--EVQ 178 (865)
T ss_pred CCcchhHHHHHHHHhhcCc-----------chhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHH--hhh
Confidence 6777899999999988763 22222233333 2233333322 3445555554444444422 111
Q ss_pred chhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHH-HHH-hhhcchHHHHhhhcccch
Q 000124 561 PAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLG-HVL-TMALQEDLVQKGSAANKG 638 (2138)
Q Consensus 561 ~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~-~La-~~~~~~d~v~~~l~~~Ga 638 (2138)
+ -..+.+..+|+++...|+.+-.++. -++..++..+..+. ++...+.++. ... ...... .....-.
T Consensus 179 e----a~~s~~~m~QyHalglLyqirk~dr-la~sklv~~~~~~~--~~~~~A~~~lir~~~~~l~~~-----~~~~s~~ 246 (865)
T KOG1078|consen 179 E----AVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLVQKFTRGS--LKSPLAVCMLIRIASELLKEN-----QQADSPL 246 (865)
T ss_pred h----ccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHcccc--ccchhHHHHHHHHHHHHhhhc-----ccchhhH
Confidence 1 1234455789999999988854422 23344444333311 1111111111 111 111110 0011123
Q ss_pred hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhh
Q 000124 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2138)
Q Consensus 639 I~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~ 718 (2138)
.+.+-.++++..+.+...|++++.++...+.... ..++..|-.++++.....|-.|.+.|..++...|.-...+.
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l-----~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL-----APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc-----chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 4445556777889999999999998865332221 12778888899999999999999999999875444100000
Q ss_pred -----hHHhc---CChhhHHhhhhcCCHHHHHH----HHHHHHHhhCCc------hHHHH-----HHhcCcHHHHHHHHh
Q 000124 719 -----SYIAE---GDVKPLIKLAKTSSIDAAET----AVAALANLLSDP------DIAAE-----VLLEDVVSALTRVLA 775 (2138)
Q Consensus 719 -----~I~~~---G~V~~Lv~LL~s~s~~Vr~e----Al~ALaNLa~~~------e~r~~-----Ii~~g~L~~LV~LL~ 775 (2138)
.+-+. =....+--+|+.+...-... .....++++..- ..+.. -...+.+..|-++|+
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr 401 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLR 401 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 00000 01122233344433222221 222222222100 00000 112334555555554
Q ss_pred C-CCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCccc
Q 000124 776 E-GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWA 854 (2138)
Q Consensus 776 ~-~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~ 854 (2138)
+ |.-+-++....++..+....+ -....+...|.....+- .-...+.+.|..|.... .+..
T Consensus 402 ~eGg~e~K~aivd~Ii~iie~~p--------dsKe~~L~~LCefIEDc----e~~~i~~rILhlLG~Eg---P~a~---- 462 (865)
T KOG1078|consen 402 EEGGFEFKRAIVDAIIDIIEENP--------DSKERGLEHLCEFIEDC----EFTQIAVRILHLLGKEG---PKAP---- 462 (865)
T ss_pred hccCchHHHHHHHHHHHHHHhCc--------chhhHHHHHHHHHHHhc----cchHHHHHHHHHHhccC---CCCC----
Confidence 3 345666677777766655321 12244455555555322 22445566666666421 1111
Q ss_pred ccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhccCCceeehhhhHHHHHhc
Q 000124 855 ALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAA 934 (2138)
Q Consensus 855 ~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~a~ 934 (2138)
+...-+..+-....-.+..+|.+|+.+|.++....+.+ ...|-.+++|.++...+|||--+|..+-.+.
T Consensus 463 ---~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l--------~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 463 ---NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL--------LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred ---CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc--------cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 11223455566666778889999999999987544322 2467899999999999999999998886443
No 221
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.70 E-value=0.074 Score=62.84 Aligned_cols=200 Identities=17% Similarity=0.099 Sum_probs=133.6
Q ss_pred ccchhhHHHHhhcCC--CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc
Q 000124 635 ANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 635 ~~GaI~aLV~LLks~--s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
...+++.|+..+... .+-+|-.|+.+|.++.. .+.++.+-++.++....++.-+..|+..+-+....
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 344677777766554 45567777777777663 34455566666666666666666666655431000
Q ss_pred ------------ccchhhhHHhcCChhhHHhhhhcCCH--HHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCC
Q 000124 713 ------------KTTNKMSYIAEGDVKPLIKLAKTSSI--DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGT 778 (2138)
Q Consensus 713 ------------~d~~r~~I~~~G~V~~Lv~LL~s~s~--~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~ 778 (2138)
++.-. ...+-|..|-..|.+.+. --|..|+..|.|+.+ +..+..|+.-+..++
T Consensus 134 ~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~S 200 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDS 200 (289)
T ss_pred ccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccch
Confidence 00000 011123334433433222 223357777776653 346777888888889
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCcccCCccccccc
Q 000124 779 SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAE 858 (2138)
Q Consensus 779 ~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~ 858 (2138)
...|..++.++++|-+. .+++.|...|...+++.=++.+|+.||+.++
T Consensus 201 alfrhEvAfVfGQl~s~--------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa------------------ 248 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQSP--------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA------------------ 248 (289)
T ss_pred HHHHHHHHHHHhhccch--------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc------------------
Confidence 99999999999988764 3678888888888888889999999999988
Q ss_pred CCCchHHHHHhhhcCChHHHHHHHHHHHHhhc
Q 000124 859 VPSSIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2138)
Q Consensus 859 ~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~ 890 (2138)
.+..++.|...+.++.+.++.....+|.-+-.
T Consensus 249 ~e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 249 DEDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred CHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 34478999999999999999998888876543
No 222
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.64 E-value=0.0033 Score=54.09 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=38.1
Q ss_pred CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 754 DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 754 ~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
+++.+..+++.|++|+|+++|.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999973
No 223
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=96.61 E-value=0.0025 Score=82.00 Aligned_cols=103 Identities=20% Similarity=0.419 Sum_probs=78.0
Q ss_pred CCCCceEEEEecCCCCc----cccccccCCCCCccccceeeecCC----------CC--CCe--EEEEEeec-CCC-CCc
Q 000124 2027 GTTNAFCRLTIGNGPPR----QTKVVSHSISPEWKEGFTWAFDVP----------PK--GQK--LHIICKSK-NTF-GKS 2086 (2138)
Q Consensus 2027 ~~~~~~~~~~~~~~~~~----~t~~~~~~~~p~w~~~f~~~~~~~----------p~--~~~--l~~~~~~~-~~~-~k~ 2086 (2138)
|.-||||+++. .|+.| +||+.+|+.+|.|+|-|-|.+..+ |- ++| |.|++|+. +.+ ++.
T Consensus 149 ~~~dp~~~v~~-~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 149 GQCDPFARVTL-CGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred CCCCcceEEee-cccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 33699999999 77777 899999999999999999987644 11 144 56778883 444 699
Q ss_pred ccceEEEEecceeecceecceeecCCCCCC-----CCCccceEEEEEec
Q 000124 2087 TLGKVTIQIDKVVTEGVYSGLFNLNHDNNK-----DSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2087 ~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~w~ 2130 (2138)
.+|.|.+..+.--.......+|-|.+..++ .|-++.+-+....+
T Consensus 228 FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 228 FLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred hceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 999999998887778889999999876333 34455555655544
No 224
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=96.57 E-value=0.0035 Score=66.44 Aligned_cols=99 Identities=21% Similarity=0.402 Sum_probs=72.9
Q ss_pred EEEEEecccccccc----------c-----CCCCceEEEE--e-cCCCCccccccccCCCCCccccceeeec---CCCCC
Q 000124 2012 LTVTIKRGNNLKQT----------M-----GTTNAFCRLT--I-GNGPPRQTKVVSHSISPEWKEGFTWAFD---VPPKG 2070 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~----------~-----~~~~~~~~~~--~-~~~~~~~t~~~~~~~~p~w~~~f~~~~~---~~p~~ 2070 (2138)
|+|-|+||-.|+-- | =.-|+||.++ | .++|+|+||.|-+|-.|+++-.|+|.+. ..+-|
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46778887766210 0 1239999998 4 6788888999999999999999999765 22233
Q ss_pred -----------CeEEEEEeecCCC-----------CCcccceEEEEecceeecc-eecceeec
Q 000124 2071 -----------QKLHIICKSKNTF-----------GKSTLGKVTIQIDKVVTEG-VYSGLFNL 2110 (2138)
Q Consensus 2071 -----------~~l~~~~~~~~~~-----------~k~~~g~~~~~~~~v~~~~-~~~~~~~l 2110 (2138)
.-+.++||-.++. |.=-||+|.|.+.|.+.+. -|.|+|++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 4688999988554 2334899999999998843 47777764
No 225
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.48 E-value=0.6 Score=59.31 Aligned_cols=302 Identities=14% Similarity=0.096 Sum_probs=182.1
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
.+.+..++-+++..+|..+.++++.+.. +.+.-..+.+.+.--.++.-|... +..-|++|...++.+....+..+.+
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence 3444444445558999999999999987 456666666666555566666543 5667889999988886542222111
Q ss_pred HHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh-h----chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHH
Q 000124 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA-A----DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDL 628 (2138)
Q Consensus 554 I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~-~----e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~ 628 (2138)
..+.+.+++.+..+.+...+..|..+|..++-. + ..+++..|++.+.++..++.+....+ +.+..+.+..
T Consensus 106 --~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~---lL~lLd~p~t 180 (371)
T PF14664_consen 106 --PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDT---LLYLLDSPRT 180 (371)
T ss_pred --CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHH---HHHHhCCcch
Confidence 356677888888888899999999999999865 2 36888999999887655544444444 4444455544
Q ss_pred HHhhhcccchhhHHHHhhcC-------CCH--HHHHHHHHHHHHHhhcChhhhhhhhhC-CCHHHHHHHhccCCHHHHHH
Q 000124 629 VQKGSAANKGLRSLVQVLNS-------SNE--ENQEYAASVLADLFSMRQDICGSLATD-EIVNPCMRLLTSNTQMVATQ 698 (2138)
Q Consensus 629 v~~~l~~~GaI~aLV~LLks-------~s~--evre~Aa~ALanL~s~~~e~r~~Ive~-GaV~~Lv~LL~dgs~~Vk~~ 698 (2138)
.+-. ...-.+..++.-..+ ++. +.-..+..++..+..+-+...---... .+++.|+..|...++.+|..
T Consensus 181 R~yl-~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 181 RKYL-RPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhh-cCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 3221 111124444432211 122 344556667766655433322222222 57899999999999999999
Q ss_pred HHHHHHHhcCC-CCc-cc--chhhhHHhcCChhhHHhhhh----------c---CCHHHHH-HHHHHHHHhhCCchHHHH
Q 000124 699 SARALGALSRP-TKT-KT--TNKMSYIAEGDVKPLIKLAK----------T---SSIDAAE-TAVAALANLLSDPDIAAE 760 (2138)
Q Consensus 699 AA~ALanLa~s-~~~-~d--~~r~~I~~~G~V~~Lv~LL~----------s---~s~~Vr~-eAl~ALaNLa~~~e~r~~ 760 (2138)
....+..+.+- .+. .+ .........|-+..--++-. . ...+..+ ..+-. -..
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLl----------l~i 329 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALL----------LAI 329 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHH----------HHH
Confidence 88888887762 121 00 01111122222211111110 0 0011111 11111 124
Q ss_pred HHhcCcHHHHHHHHhCC-CHHHHHHHHHHHHHhhh
Q 000124 761 VLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLK 794 (2138)
Q Consensus 761 Ii~~g~L~~LV~LL~~~-~~~Vr~~Aa~AL~nL~~ 794 (2138)
+++.|.++.|+++..+. ++.+..+|.-.|+.+..
T Consensus 330 li~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 330 LIEAGLLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 56899999999999887 88999999999987764
No 226
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.41 Score=57.86 Aligned_cols=198 Identities=18% Similarity=0.182 Sum_probs=120.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhH
Q 000124 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLL-GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2138)
Q Consensus 86 Vp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~-~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gr 164 (2138)
.-.++++|.+.+|.++..|...+..+... ..+..... ...++.+.+++...++ .+.|+.+|.|++. +..-+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-----~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-----KEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-----hHHHH
Confidence 34688999999999999999999888765 33322222 2557888899987555 6788999999996 44557
Q ss_pred HHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHH-----hCcHHHHHH-hhccCCH--HHHHHH
Q 000124 165 KIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE-----AGGVDIIVG-LLSSDNA--AAQSNA 236 (2138)
Q Consensus 165 e~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e-----~GGI~~Lv~-lL~s~s~--evq~~A 236 (2138)
+++.+. .+..++..+.++. ..+...++..|.|+++.++.....+.. ..|+..+.. +.+.+-. .--...
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~---~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~yl 152 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQ---SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYL 152 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcc---cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHH
Confidence 777776 7777788777653 246778899999999977543222211 134444444 3333211 122444
Q ss_pred HHHHHHHHhhcCCCcchhhccc-hHHHHHHHhccCCCHhH-HHHHHHHHHHHhhcCHHHHHHHH
Q 000124 237 ASLLARLMLAFGDSIPTVIDSG-AVKALVQLVGQNNDISV-RASAADALEALSSKSIKAKKAVV 298 (2138)
Q Consensus 237 ~~aL~nLs~~~~e~r~~l~~~G-aL~~LL~LL~s~sd~~v-r~~Aa~aL~nLs~~s~e~Rk~i~ 298 (2138)
+.++.+|+ ..+..|..+.+.. +...-+..+.. .+..+ |...+++|.|.+++ ...+..+.
T Consensus 153 A~vf~nls-~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd-~~~h~~lL 213 (353)
T KOG2973|consen 153 APVFANLS-QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFD-AKLHEVLL 213 (353)
T ss_pred HHHHHHHh-hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhcc-chhHHHHh
Confidence 56666766 3334444444433 22222233332 23333 34556777887775 44444444
No 227
>PRK14707 hypothetical protein; Provisional
Probab=96.45 E-value=10 Score=55.76 Aligned_cols=694 Identities=18% Similarity=0.158 Sum_probs=314.3
Q ss_pred CHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHH-hcCCHHHHHHHHHHH-HHhccCchhHHHHHhcCChHHHH
Q 000124 54 SPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISIL-RSGTPLAKVNVAATL-SVLCKDEDLRLKVLLGGCIPPLL 131 (2138)
Q Consensus 54 s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LL-ks~~~evr~~Aa~~L-~~Ls~~e~~r~~v~~~G~Ip~Lv 131 (2138)
+....+.+...|......++..+..+- ..+|-.++..+ |.++.....+++..| ..++.+...+ .-....++-..+
T Consensus 177 ~~~~c~~aa~~la~~~~~~d~~~~~~~--~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~-~~~~~q~va~~l 253 (2710)
T PRK14707 177 DNPDCQAVAPRFAALVASDDRLRSAMD--AQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLR-NELKPQELGNAL 253 (2710)
T ss_pred CCchHHHHHHHHHHHhcCChhhhcccc--hHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHH-HhCChHHHHHHH
Confidence 334567777777766666666666663 35666666555 455444455566666 5666664443 333456677777
Q ss_pred Hhhcc-CCHHHHHHHHHHH-HHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHH-HHHhcCCCch
Q 000124 132 SLLKS-ESTDTRKAAAEAL-YEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGAL-RNLCGDKDGY 208 (2138)
Q Consensus 132 ~LL~s-ed~eVr~aAa~AL-~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL-~nLcs~~e~r 208 (2138)
..|.. .+..+...|+.+| ..++. + .+..+-++.-.+...++.|..-. +..++..|...| ..|..+. .-
T Consensus 254 N~lsKwp~~~~C~~a~~~lA~rl~~-----~-~~l~~al~~q~vanalNalSKwp--d~~vc~~Aa~~la~rl~~d~-~l 324 (2710)
T PRK14707 254 NALSKWADTPVCAAAASALAERLVD-----D-PGLRKALDPINVTQALNALSKWA--DLPVCAEAAIALAERLADDP-EL 324 (2710)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhh-----h-HHHHHhcCHHHHHHHHhhhhcCC--CchHHHHHHHHHHHHHhccH-hh
Confidence 77766 4444444444444 44443 2 22223333333444444443222 222444444443 3443322 11
Q ss_pred hHHHHHhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHH
Q 000124 209 WRATLEAGGVDIIVGLLSS--DNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEAL 286 (2138)
Q Consensus 209 ~~aI~e~GGI~~Lv~lL~s--~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nL 286 (2138)
..-.+.-++...+..|+. ++..++..+..+-..|+ .+++.++.+. ...+...++.+..=++..+-..++..|-.-
T Consensus 325 -~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~-~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~ 401 (2710)
T PRK14707 325 -CKALNARGLSTALNALSKWPDNPVCAAAVSALAERLV-ADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEH 401 (2710)
T ss_pred -hhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-cCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence 111222356666666655 33455555555555666 3444444333 345666666665434444444444444333
Q ss_pred hhcCHHHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhHHHHHHHHHHh-------hcCchh-HHHHhhhhcCC-CC
Q 000124 287 SSKSIKAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALANI-------YGGMPA-LVVYLGELSQS-PR 356 (2138)
Q Consensus 287 s~~s~e~Rk~i~e~ggL~~LI~LL~s-~s~e~mq~~~~~alqe~Al~ALanI-------sGgis~-LI~~L~elL~~-~~ 356 (2138)
.....+.++.+- ..++...++.+.. |... ....+..+|+-- +..+.+ .|......+.. |+
T Consensus 402 l~~d~~l~~~~~-~Q~van~lnalsKWPd~~---------~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd 471 (2710)
T PRK14707 402 VVDDLELRKGLD-PQGVSNALNALAKWPDLP---------ICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPD 471 (2710)
T ss_pred hccChhhhhhcc-hhhHHHHHHHhhcCCcch---------hHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCC
Confidence 333467776664 5566666666654 4422 222233333321 111222 12222222222 22
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhh----cCchhHHHHhhhc
Q 000124 357 LAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLY----GNIFLSQWVSHAE 432 (2138)
Q Consensus 357 ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~----~n~~~~~~L~e~~ 432 (2138)
. ..|......|+..+.+ + ...+..|+...+...|-.|-+.++.. .|..++.-++ ........+...+
T Consensus 472 ~-p~c~~aa~~La~~l~~---~-~~l~~a~~~q~~~~~L~aLSK~Pd~~----~c~~A~~~lA~rl~~~~~l~~~~~~~~ 542 (2710)
T PRK14707 472 T-PICGQTASALAARLAH---E-RRLRKALKPQEVVIALHSLSKWPDTP----ICAEAASALAERVVDELQLRKAFDAHQ 542 (2710)
T ss_pred C-hhHHHHHHHHHHHhcc---c-HHHHhhcCHHHHHHHHHHhhcCCCcH----HHHHHHHHHHHHhccchhhhhhhhhHH
Confidence 2 2233333333332221 1 12345666667777777777777653 3333443332 2223333333334
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc-CCchh-hHHHHHHHHHHHhhcCchhHH
Q 000124 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG-LSSEQ-HQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 433 gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~-s~d~~-Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
....+-.+-+..+......++..|..+..+.+.....+ ...+|..++..++ -++.. .+..+.+.-..+.. .++.+.
T Consensus 543 ~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L-~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~ 620 (2710)
T PRK14707 543 VVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDL-HRQGVVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRK 620 (2710)
T ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhh-hhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc-Chhhhh
Confidence 44444445555666667777777776655544444444 3445666666554 33333 33333333333433 233222
Q ss_pred HHHhcCCchHHHHHh-hhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhh-ccccCChhHHHHHHHHHHHH-HH
Q 000124 511 AITAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW-LLKSGGPKGQDASAMALTKL-IR 587 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LL-ks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~-LLkS~~~evq~~Aa~AL~nL-s~ 587 (2138)
.+ ....+..++.-| +-++....+.++..|..--..+...+..+. ...|..++. +-|-.+.+....++..|... ..
T Consensus 621 ~l-~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fn-aQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~ 698 (2710)
T PRK14707 621 EL-DPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFN-SLDVANALNALSKWPDTPVCAAAAGGMAERLAA 698 (2710)
T ss_pred hc-cHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcc-hHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhc
Confidence 22 222333344433 333444445555444332221222222222 233444443 33445555666666666433 32
Q ss_pred hhc------hhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHH
Q 000124 588 AAD------SATINQLLALL-LGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660 (2138)
Q Consensus 588 ~~e------~~aI~~Li~LL-~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~A 660 (2138)
.+. ...+..++.-| +=.+......+...|+.-. ...++.. ..+...+.-..|=.+.|-.+.+.-..|+.+
T Consensus 699 ~~~Lr~al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL--~~~p~l~-~a~~aQevANaLNALSKWPd~~~C~~AA~a 775 (2710)
T PRK14707 699 DPGLRKELNPVDVANALNALSKWPRTPVCAAVASALAARV--VAEPRLR-KAFDAQQVATALNALSKWPDNQACAAAANT 775 (2710)
T ss_pred ChhhHhhcCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHH--hcChhhh-hhcCHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 211 11222222222 2222223333333333221 1122111 122222223333334444444433334444
Q ss_pred HH-HHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc-CC
Q 000124 661 LA-DLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SS 737 (2138)
Q Consensus 661 La-nL~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~s 737 (2138)
|+ .+.. ++..+..+--+++-. .++-|+. .....-..|+.+|+.-... .. ..+.. .+...|...++-|.. ++
T Consensus 776 LA~rLa~-~~~Lr~aL~pQ~vAn-~LNALSKWPe~~~Cr~AA~~LA~rLa~-dp--~Lr~a-f~AQ~VANaLNALSKWPd 849 (2710)
T PRK14707 776 LAERQLR-EPDVRDVLKPREMTN-ALNALSKWPDTPACAAAASALAARVAD-DP--RLREA-FDVQHVATVLNAMSKWPD 849 (2710)
T ss_pred HHHHHhh-CcchhhhcCHHHHHH-HHHHhhcCCCchHHHHHHHHHHHHHhc-Ch--hHHHh-cCHHHHHHHHHHhccCCC
Confidence 44 4444 555555443333322 2333332 3334444555555433221 11 33332 223334444444433 55
Q ss_pred HHHHHHHHHHHHH-hhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 738 IDAAETAVAALAN-LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 738 ~~Vr~eAl~ALaN-La~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
......|+.+|.- |..++..|..+-..+....|-.+-+=.+...+..|+.+|..-..
T Consensus 850 ~~~Cr~AA~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~ 907 (2710)
T PRK14707 850 NAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA 907 (2710)
T ss_pred chHHHHHHHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh
Confidence 5666666666654 55677777776544444444444444566777777777765443
No 228
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.41 E-value=0.14 Score=64.80 Aligned_cols=192 Identities=13% Similarity=0.056 Sum_probs=138.0
Q ss_pred HHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc--CCHH
Q 000124 63 MRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS--ESTD 140 (2138)
Q Consensus 63 ~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s--ed~e 140 (2138)
..|..+.+..+.-|....- ...++.+..++-+++.+++..+.++++.+..+.+.-..+...+.---++..|.. ....
T Consensus 5 N~Lv~l~~~~p~l~~~~~~-~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVL-SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHhCchhhhhhhH-HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 4455555555544443332 234555555555556999999999999999999988888887765566677766 3566
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHH
Q 000124 141 TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220 (2138)
Q Consensus 141 Vr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~ 220 (2138)
-|++|.+.+..+..... +. ..+..|++..++....... ..++..++.+|+.++-.++ ..+.++||+..
T Consensus 84 ER~QALkliR~~l~~~~-----~~-~~~~~~vvralvaiae~~~---D~lr~~cletL~El~l~~P---~lv~~~gG~~~ 151 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKK-----GP-KEIPRGVVRALVAIAEHED---DRLRRICLETLCELALLNP---ELVAECGGIRV 151 (371)
T ss_pred HHHHHHHHHHHHHHhcC-----Cc-ccCCHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHhhCH---HHHHHcCCHHH
Confidence 79999999998886411 11 1235678888888887643 3589999999999998764 45789999999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhc
Q 000124 221 IVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG 268 (2138)
Q Consensus 221 Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~ 268 (2138)
|.+.+.++..+..+..+.++..+. ++|..|+.+...--+..++..+.
T Consensus 152 L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apft 198 (371)
T PF14664_consen 152 LLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFT 198 (371)
T ss_pred HHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhh
Confidence 999998876678888888888888 66777776655555666666654
No 229
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.33 E-value=1.9 Score=54.65 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHhhC--Cc---hHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhh
Q 000124 736 SSIDAAETAVAALANLLS--DP---DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF 810 (2138)
Q Consensus 736 ~s~~Vr~eAl~ALaNLa~--~~---e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~g 810 (2138)
....|+..|.++|+|+.. ++ -.-.++++.....-+-...-.+.-.||-+|+.+++||..+..+. +...--...
T Consensus 496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~--lq~~~wA~~ 573 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP--LQTAPWASQ 573 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc--ccCCCchHH
Confidence 456788899999999964 21 11122333222333333445567899999999999999985430 111111134
Q ss_pred hHHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000124 811 VVLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2138)
Q Consensus 811 av~~LV~LL~s~~~~~~~~~~AL~ALa~La 840 (2138)
..+.|..++.+.. +-+.+..|+.+|.--+
T Consensus 574 ~F~~L~~Lv~~~~-NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 574 AFNALTSLVTSCK-NFKVRIRAAAALSVPG 602 (728)
T ss_pred HHHHHHHHHHHhc-cceEeehhhhhhcCCC
Confidence 5667777776544 3466888888776544
No 230
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.28 E-value=0.0059 Score=52.53 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=38.2
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 668 ~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
+++++..+++.|++++|+++|+++++.++++|++||+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 231
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.74 Score=64.85 Aligned_cols=299 Identities=14% Similarity=0.106 Sum_probs=155.8
Q ss_pred chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhc
Q 000124 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566 (2138)
Q Consensus 487 d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~L 566 (2138)
...-|..|+.+++.++... ..+....-...||.|.+.=-+++..++.....+=..|..++...-.... ...++-|+.-
T Consensus 970 ~wnSk~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~ 1047 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVN 1047 (1702)
T ss_pred hhhcccchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHh
Confidence 4456778888898888632 2222223345677777766677889988777766667664322111111 3455666767
Q ss_pred cccCChhHHHHHHHHHHHHHHhhch----hhHH----HHHHHhcCCCcchHHHHHHHHHHHHhh---hcchHHHHhhhcc
Q 000124 567 LKSGGPKGQDASAMALTKLIRAADS----ATIN----QLLALLLGDSPSSKAHVIKVLGHVLTM---ALQEDLVQKGSAA 635 (2138)
Q Consensus 567 LkS~~~evq~~Aa~AL~nLs~~~e~----~aI~----~Li~LL~~~d~~V~~~A~~AL~~La~~---~~~~d~v~~~l~~ 635 (2138)
+.+....+|+.+|-+|..|.+..+. +-+| .+.+.+.|=++.|++.+..+...++.. .-+. .+....
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~---~~~~~~ 1124 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV---TNGAKG 1124 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---CCcccH
Confidence 7788899999999999999887542 2222 233334444555665554444444322 1111 111111
Q ss_pred cchhhHHHHhhc-----CCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH-HHHHHHHHHhcCC
Q 000124 636 NKGLRSLVQVLN-----SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA-TQSARALGALSRP 709 (2138)
Q Consensus 636 ~GaI~aLV~LLk-----s~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk-~~AA~ALanLa~s 709 (2138)
...+..+..++- +.-+++|..+...+..|+.+.+..... .-...++.|++....-.+.+- .-++++ .|...
T Consensus 1125 ~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP-~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~- 1201 (1702)
T KOG0915|consen 1125 KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKP-HFPKLIPLLLNAYSELEPQVLNYLSLRL-INIET- 1201 (1702)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcc-hhhHHHHHHHHHccccchHHHHHHHHhh-hhhHH-
Confidence 122333333221 446899999999999998754332111 112456666666666544322 222222 11111
Q ss_pred CCcccchhhhHHh--------------------cCChhhHHhhhhcC-CHHHHHHHHHHHHHhhCC--chHHHHHHhcCc
Q 000124 710 TKTKTTNKMSYIA--------------------EGDVKPLIKLAKTS-SIDAAETAVAALANLLSD--PDIAAEVLLEDV 766 (2138)
Q Consensus 710 ~~~~d~~r~~I~~--------------------~G~V~~Lv~LL~s~-s~~Vr~eAl~ALaNLa~~--~e~r~~Ii~~g~ 766 (2138)
..-|..|..+.. ...++.+.++++.+ .-..+.-++..++.|+.. .+... .-...
T Consensus 1202 -ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKl 1278 (1702)
T KOG0915|consen 1202 -EALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKL 1278 (1702)
T ss_pred -HHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHH
Confidence 001122221111 12344444444432 112222333333333220 00000 01124
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhcC
Q 000124 767 VSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 767 L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
+..+...+.+.++.+++.-+-+++.|....
T Consensus 1279 l~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1279 LRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 556666777889999999999999998754
No 232
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=11 Score=53.91 Aligned_cols=616 Identities=17% Similarity=0.158 Sum_probs=277.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh----ccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhh
Q 000124 88 LFISILRSGTPLAKVNVAATLSVL----CKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2138)
Q Consensus 88 ~LV~LLks~~~evr~~Aa~~L~~L----s~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~g 163 (2138)
.|...+.+.++..|...+-.|..+ +..++..... ........++|.++|+-++..|++-|.-+..-|+. .
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~--~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~--~-- 895 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLML--KEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS--S-- 895 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhcc--HHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc--h--
Confidence 344555667888888777666444 2222221111 13336777888887777777776655443332221 1
Q ss_pred HHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q 000124 164 MKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARL 243 (2138)
Q Consensus 164 re~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nL 243 (2138)
.+.+.+..|++-|..++.... .+... ..+.+.|. |+.+...-......=|++|
T Consensus 896 ----~k~~LV~sL~~tl~~Gkr~~~-----------~vs~e-----TelFq~G~-------Lg~Tp~Gg~isTYKELc~L 948 (1702)
T KOG0915|consen 896 ----LKKSLVDSLVNTLTGGKRKAI-----------KVSEE-----TELFQEGT-------LGKTPDGGKISTYKELCNL 948 (1702)
T ss_pred ----hHHHHHHHHHHHHhccccccc-----------eeccc-----hhcccCCc-------CCCCCCCCcchHHHHHHHH
Confidence 223456667776655431100 00110 11223232 2222112233344556666
Q ss_pred HhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhh
Q 000124 244 MLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRG 323 (2138)
Q Consensus 244 s~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~ 323 (2138)
+ ..+.+...+-.++++-.|.-...-+.-|+.-+..++.+. ..+-.-+-..-+|.|..+=.+|++..
T Consensus 949 A-------Sdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~V------ 1014 (1702)
T KOG0915|consen 949 A-------SDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKV------ 1014 (1702)
T ss_pred H-------hhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHH------
Confidence 6 233344556666666665433444555555555555532 11111112356677777777776542
Q ss_pred hhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCC
Q 000124 324 QALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHD 403 (2138)
Q Consensus 324 ~alqe~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~ 403 (2138)
..|+..+|+.--..+.. .-+.+-+....+.|..+ .+ .
T Consensus 1015 ----q~aM~sIW~~Li~D~k~-------------------------------------~vd~y~neIl~eLL~~l-t~-k 1051 (1702)
T KOG0915|consen 1015 ----QDAMTSIWNALITDSKK-------------------------------------VVDEYLNEILDELLVNL-TS-K 1051 (1702)
T ss_pred ----HHHHHHHHHHhccChHH-------------------------------------HHHHHHHHHHHHHHHhc-cc-h
Confidence 12444555532111000 00011111111222222 11 2
Q ss_pred hhHHHHHHHHHHHHhhcCchhHHHHhhh-chHHHHHHHHccCCHHHHHHHH---HHHHHhhhccchh-----hHHhhhch
Q 000124 404 NKLVQERVLEAMASLYGNIFLSQWVSHA-EAKKVLIGLITMATADVREYLI---LSLTKLCRREVGI-----WEAIGKRE 474 (2138)
Q Consensus 404 ~e~vr~~Aa~AL~~L~~n~~~~~~L~e~-~gI~~LV~LL~sss~evq~~Aa---~aL~~Ls~~s~~~-----~~~I~e~g 474 (2138)
.+.+|+.++.||..|..+.+......+- +....+.+.+.+-.+.+|+.+- .+|..+|-...+. ...+ -..
T Consensus 1052 ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~-l~~ 1130 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEA-LDI 1130 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH-HHH
Confidence 3457888888888886554322211111 1222333333433445555443 4455544321111 1111 112
Q ss_pred hHHHHHH--HhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 475 GIQLLIS--LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 475 gIp~LV~--LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
.+|.|+. ++ +.-+++|..++..+..|+.+.+. .-...-...+|.|......-++.+.. +++......
T Consensus 1131 iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~-~lkP~~~~LIp~ll~~~s~lE~~vLn-------Yls~r~~~~-- 1199 (1702)
T KOG0915|consen 1131 ILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGK-ELKPHFPKLIPLLLNAYSELEPQVLN-------YLSLRLINI-- 1199 (1702)
T ss_pred HHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchh-hhcchhhHHHHHHHHHccccchHHHH-------HHHHhhhhh--
Confidence 3444443 22 55677999999999999985433 11111223445555544443444332 222211110
Q ss_pred HHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc----hhhHHHHHHHhcCCCc-chHHHHHHHHHHHHhhhcchH
Q 000124 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----SATINQLLALLLGDSP-SSKAHVIKVLGHVLTMALQED 627 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e----~~aI~~Li~LL~~~d~-~V~~~A~~AL~~La~~~~~~d 627 (2138)
+..++..+-.-...+.|. - .++..+.+..| .+.+|.+.++++++-- ..+.-++..+..|..-... |
T Consensus 1200 ---e~ealDt~R~s~aksspm-m----eTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~-e 1270 (1702)
T KOG0915|consen 1200 ---ETEALDTLRASAAKSSPM-M----ETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGS-E 1270 (1702)
T ss_pred ---HHHHHHHHHHhhhcCCcH-H----HHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcc-c
Confidence 111222221111112221 1 12222222222 3567888888886422 2334444444444322110 0
Q ss_pred HHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh-hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD-ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 628 ~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e-~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
..-.....+..++..+++.++.++..-+.++..|.....+ .....+ ..++..+-...+..+..++..+.++
T Consensus 1271 ---mtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi-----e~~l~~~l~k~es~~siscatis~I 1342 (1702)
T KOG0915|consen 1271 ---MTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI-----ETLLADLLGKDESLKSISCATISNI 1342 (1702)
T ss_pred ---cCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH-----HHHHHHHhccCCCccchhHHHHHHH
Confidence 0001122477778888888999999999999888764333 333332 2233222222222224455555666
Q ss_pred cCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh-----CCchHHHHHHhcCcHHHHH-HHHhCCCHH
Q 000124 707 SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL-----SDPDIAAEVLLEDVVSALT-RVLAEGTSE 780 (2138)
Q Consensus 707 a~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa-----~~~e~r~~Ii~~g~L~~LV-~LL~~~~~~ 780 (2138)
+....+ ..+. ....+-||+-+-.... +++-.-|.|=. .....+..+.....+-.+. ....+..-.
T Consensus 1343 an~s~e--~Lkn---~asaILPLiFLa~~ee----~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~ 1413 (1702)
T KOG0915|consen 1343 ANYSQE--MLKN---YASAILPLIFLAMHEE----EKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWK 1413 (1702)
T ss_pred HHhhHH--HHHh---hHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHH
Confidence 652221 1111 1224555554443322 23333333322 2222233323334444444 344445567
Q ss_pred HHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhc----cCCCCchhHHHHHHHHHHHh
Q 000124 781 GKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN----AMDMNGTDVADALEVVALLA 840 (2138)
Q Consensus 781 Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~----s~~~~~~~~~~AL~ALa~La 840 (2138)
++..++.++.-++.... ...+...+.++...+. .-.+++ +.+-+.+++...
T Consensus 1414 lr~q~Akai~~~a~~~s-------ss~~~p~ilkl~~~ll~~L~GRiwdG--Ke~iLKAl~~~~ 1468 (1702)
T KOG0915|consen 1414 LRKQAAKAIRVIAEGLS-------SSAPIPVILKLALSLLDTLNGRIWDG--KEEILKALASAF 1468 (1702)
T ss_pred HHHHHHHHHHHHccccc-------ccCChHHHHHHHHHHHHHhhcccccc--HHHHHHHHHHHH
Confidence 88899988888776431 1112234444444443 333445 666666666443
No 233
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.36 Score=60.42 Aligned_cols=208 Identities=16% Similarity=0.193 Sum_probs=157.4
Q ss_pred HHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCC-CCCh----hhHHHHHHcCcHHHHHH
Q 000124 104 VAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGL-SDDH----VGMKIFVTEGVVPTLWD 178 (2138)
Q Consensus 104 Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~-nkd~----~gre~IveaG~Ip~Ll~ 178 (2138)
.+.-+..++.-++....+++..+++.++.+|++++.++..+....|..|..... +.+. .-.+.+++.++++.|++
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 455566778888988899999999999999999999999999999999987521 1112 23456677788998887
Q ss_pred hhC---CCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC--CHHHHHHHHHHHHHHHhhcCCCcch
Q 000124 179 QLN---PKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGDSIPT 253 (2138)
Q Consensus 179 LL~---s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~--s~evq~~A~~aL~nLs~~~~e~r~~ 253 (2138)
-+. .+.+++..=..+.+..+-|+..-.+.....+++.|-+.+|+..+... -..-...|..+|.-+...+.+++..
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~ 263 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKL 263 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhh
Confidence 654 33333333345778888999998888888889998899999866553 2456788888888888666667777
Q ss_pred hhccchHHHHHHHhc----cC----CCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC
Q 000124 254 VIDSGAVKALVQLVG----QN----NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2138)
Q Consensus 254 l~~~GaL~~LL~LL~----s~----sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s 312 (2138)
.....++..+++-+. ++ ...+.-++-..+|+.+.. .+.+|..+.+..|++..+-+++.
T Consensus 264 ~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~ 329 (536)
T KOG2734|consen 264 LGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE 329 (536)
T ss_pred hcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH
Confidence 777788888887764 22 133455677788888888 48999999999999988887765
No 234
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=7.7 Score=51.52 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=73.4
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh-hCCHHHHHHHHHHHHHHhcCChhHHH
Q 000124 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRA 552 (2138)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk-s~d~~vre~Aa~aL~nLs~~sd~~r~ 552 (2138)
..+..|-+++.+....+|--|...++.|+.. +.....+... ...++..|+ ..|..+|+.+...|..++. . .+.+
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD-~-~Nak 403 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD-V-SNAK 403 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc-h-hhHH
Confidence 4566777788888888999999999999884 4444444333 677788888 4599999999999999874 2 2223
Q ss_pred HHHHcCCcchhhhccccCChhHHHHHHHHHHHHHH
Q 000124 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~ 587 (2138)
. .|.-|++-+.+.++.+|+..+.-..-|+.
T Consensus 404 ~-----IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 404 Q-----IVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred H-----HHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 3 34457777777888888776655555553
No 235
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.94 Score=56.96 Aligned_cols=268 Identities=14% Similarity=0.136 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccC------c----hhHHHHHhcCCh
Q 000124 58 RELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD------E----DLRLKVLLGGCI 127 (2138)
Q Consensus 58 re~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~------e----~~r~~v~~~G~I 127 (2138)
.....+-+..++..++-+-.++. .++|+.|+.+|.+.+.++-...+.+|..|... . .....++..+.+
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lve--ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVE--LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHH--hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 34556667777777766655553 68999999999999999999999999888532 1 223445566888
Q ss_pred HHHHHhhccC------CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHH
Q 000124 128 PPLLSLLKSE------STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNL 201 (2138)
Q Consensus 128 p~Lv~LL~se------d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nL 201 (2138)
+.|++.+..= +.+....+...+.|+... .++-...+++.|.+.-|+.-+.....-+ .....+..+|.-+
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~----r~~~~~~~~e~~ll~WLL~rl~~k~~f~-aNk~YasEiLail 253 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEV----RPAICTEIVEQGLLSWLLKRLKGKAAFD-ANKQYASEILAIL 253 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhc----cHHHHHHHHHhhHHHHHHHHHhcccCcc-hhHHHHHHHHHHH
Confidence 9999888762 333455666777777753 4455677788888888887665543233 3567889999988
Q ss_pred hcCCCchhHHHHHhCcHHHHHHhhcc---CC---HHHHHHHHHHHHHHHh--hcCCCcchhhccchHHHHHHHhccCCCH
Q 000124 202 CGDKDGYWRATLEAGGVDIIVGLLSS---DN---AAAQSNAASLLARLML--AFGDSIPTVIDSGAVKALVQLVGQNNDI 273 (2138)
Q Consensus 202 cs~~e~r~~aI~e~GGI~~Lv~lL~s---~s---~evq~~A~~aL~nLs~--~~~e~r~~l~~~GaL~~LL~LL~s~sd~ 273 (2138)
-.++..+...+-.-.|++.+++-+.. .+ .+-++..-..+.+||. ..+.++..+....++.-..-+++. ..
T Consensus 254 lq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk 331 (536)
T KOG2734|consen 254 LQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KK 331 (536)
T ss_pred hccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HH
Confidence 88887676777788899999987754 12 2344555555566653 556667777766665554444442 22
Q ss_pred hHHHHHHHHHHHHhhcCH--HHHHHHHhcCCHHHHHHhhc-CCchhhhhhhhhhhhHHHHHHHH
Q 000124 274 SVRASAADALEALSSKSI--KAKKAVVAADGVPVLIGAIV-APSKECMQGQRGQALQGHATRAL 334 (2138)
Q Consensus 274 ~vr~~Aa~aL~nLs~~s~--e~Rk~i~e~ggL~~LI~LL~-s~s~e~mq~~~~~alqe~Al~AL 334 (2138)
..+..+..+|-....+.+ .++..+++..|+..+..+.. .|++.+-...+....-++....|
T Consensus 332 ~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~sii 395 (536)
T KOG2734|consen 332 VSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSIL 395 (536)
T ss_pred HhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHH
Confidence 456667777777766533 67778888899998887554 34443333333332334433333
No 236
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.09 E-value=0.011 Score=76.67 Aligned_cols=87 Identities=23% Similarity=0.382 Sum_probs=72.2
Q ss_pred CCceEEEEEeccccc--ccccCCCCceEEEEecCCC------CccccccccCCCCCcc-ccceeeecCCCCCCeEEEEEe
Q 000124 2008 LPGCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP------PRQTKVVSHSISPEWK-EGFTWAFDVPPKGQKLHIICK 2078 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~t~~~~~~~~p~w~-~~f~~~~~~~p~~~~l~~~~~ 2078 (2138)
+|=-|+|.|..|-.| .|+ |..-|||.+.+ -|- .|.|+|+.+.+||.|| |.|+|-+-.| -=-.|..+|.
T Consensus 1063 ~p~~lsv~vigaRHL~k~gr-~i~cPfVevEi-iGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1063 LPMTLSVKVLGARHLPKLGR-SIACPFVEVEI-IGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVY 1139 (1267)
T ss_pred cceEEEEEEeeccccccCCC-CccCCcEEEEE-eccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEe
Confidence 567899999999999 455 66669999987 443 2337888899999999 9999999988 6678999999
Q ss_pred ecCCC-CCcccceEEEEecc
Q 000124 2079 SKNTF-GKSTLGKVTIQIDK 2097 (2138)
Q Consensus 2079 ~~~~~-~k~~~g~~~~~~~~ 2097 (2138)
+.|.| .+..+|..+..++-
T Consensus 1140 eeDmfs~~~FiaqA~yPv~~ 1159 (1267)
T KOG1264|consen 1140 EEDMFSDPNFLAQATYPVKA 1159 (1267)
T ss_pred cccccCCcceeeeeecchhh
Confidence 99999 56678998888764
No 237
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=9.2 Score=50.86 Aligned_cols=242 Identities=14% Similarity=0.115 Sum_probs=130.8
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHH
Q 000124 50 ANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPP 129 (2138)
Q Consensus 50 ~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~ 129 (2138)
..+...-.|+.|.-+|..|-+..++. +.. .+-...++.+|.+.+-.+...+..++-.+++....-.+....-++..
T Consensus 157 S~~~~~~vkqkaALclL~L~r~spDl---~~~-~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~ 232 (938)
T KOG1077|consen 157 SGSSMDYVKQKAALCLLRLFRKSPDL---VNP-GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSR 232 (938)
T ss_pred CCcchHHHHHHHHHHHHHHHhcCccc---cCh-hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHH
Confidence 33444444555655666665554332 211 34567788888777666666666666666644333333322233333
Q ss_pred HHHhhcc-------------CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHH
Q 000124 130 LLSLLKS-------------ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG 196 (2138)
Q Consensus 130 Lv~LL~s-------------ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~ 196 (2138)
|.++... +.|..+...+++|.+.=. ..+...+..+.+ +...++...+.+.+....-..+|..
T Consensus 233 L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~---~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~n 307 (938)
T KOG1077|consen 233 LSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT---PEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKN 307 (938)
T ss_pred HHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC---CCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHH
Confidence 3333321 245566666666666522 223333444433 4444444444222111111111211
Q ss_pred ----HHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCC
Q 000124 197 ----ALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNND 272 (2138)
Q Consensus 197 ----aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd 272 (2138)
-..++..+-+..-..+.+ ++..|.++|.+...++|.-++..++.|+.. +.....+.. -.+.++..|....|
T Consensus 308 aVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~--h~d~Ii~sLkterD 382 (938)
T KOG1077|consen 308 AVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKK--HQDTIINSLKTERD 382 (938)
T ss_pred HHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHH--HHHHHHHHhccccc
Confidence 122344433333233333 677888888888888898888888888843 222222222 26777888887889
Q ss_pred HhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcC
Q 000124 273 ISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2138)
Q Consensus 273 ~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s 312 (2138)
..+|..+.+.|-.++.. .+.+.++ .-|+..+.+
T Consensus 383 vSirrravDLLY~mcD~--~Nak~IV-----~elLqYL~t 415 (938)
T KOG1077|consen 383 VSIRRRAVDLLYAMCDV--SNAKQIV-----AELLQYLET 415 (938)
T ss_pred hHHHHHHHHHHHHHhch--hhHHHHH-----HHHHHHHhh
Confidence 99999999999888874 3444444 345555544
No 238
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.78 E-value=0.89 Score=56.47 Aligned_cols=200 Identities=15% Similarity=0.152 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccC---
Q 000124 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD--- 114 (2138)
Q Consensus 38 ~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~--- 114 (2138)
...+.++|+.+..++ ...|+.++..+..+...+--...+-....-.++.+.+.++.|..+-+..|++++..++-.
T Consensus 42 e~~L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKS--SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 345888888887755 678999999999988665322222111123578888888888887778888888777533
Q ss_pred chhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhh--CCCC------
Q 000124 115 EDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL--NPKN------ 184 (2138)
Q Consensus 115 e~~r~~v~~~G~Ip~Lv~LL~se--d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL--~s~s------ 184 (2138)
.+....+. ....|.|.+++.+. ++.+|..|+.+|..++..+.. +.......++ .+..++... ..+.
T Consensus 120 g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~-d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 120 GEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGS-DEEETEELME--SLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred CccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC-ChhHHHHHHH--HHHHHHHHHhcCcCCCccccc
Confidence 12222222 35668888888873 677888888888887764322 2221221111 233222222 2111
Q ss_pred -CCChhHHHHHHHHHHHHhcCCCch-hHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000124 185 -KQDNVVQGFVTGALRNLCGDKDGY-WRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 185 -~ed~~V~e~Al~aL~nLcs~~e~r-~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs 244 (2138)
..++.+...|+.+..-|...-+.. .... -...++.|..+|.+++.++|.+|-.+|+-|.
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 112356777777666665544432 1211 1235899999999999999999998888776
No 239
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.69 Score=61.05 Aligned_cols=314 Identities=16% Similarity=0.166 Sum_probs=183.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHh-cCCchhhHHHHHHHHHHHhhcCchhHHHH
Q 000124 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2138)
Q Consensus 434 I~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I 512 (2138)
++.+...+.+....++++|+-++..+-..... .+ .++-+.+-..| ...++..+++|-..|...-. + |
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~---E-r--- 203 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LI--PDAPELIESFLLTEQDPSCKRNAFLMLFTTDP---E-R--- 203 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hc--CChHHHHHHHHHhccCchhHHHHHHHHHhcCH---H-H---
Confidence 45555667778889999998777665544111 11 12222333333 46677788888766654432 1 1
Q ss_pred HhcCCchHHHHHhh---hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh
Q 000124 513 TAAGGIPPLVQLLE---AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA 589 (2138)
Q Consensus 513 ~~aGaIp~LV~LLk---s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~ 589 (2138)
++.-|..... +-++..+-...+.++.-+..++..+ ..-++.+..+|.+.++.+.+.|+.+|.++++++
T Consensus 204 ----Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p 274 (948)
T KOG1058|consen 204 ----ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP 274 (948)
T ss_pred ----HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence 1222221111 1145555666666666665443322 234566788889999999999999999998775
Q ss_pred c--hhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 590 D--SATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 590 e--~~aI~~Li~LL~~~-d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
. ..+...+++|+.+. +.+++.-...-|..+. ..+.... .|.+--++.++.+++-++|..+......|.+
T Consensus 275 ~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il------~~l~mDvLrvLss~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 275 TALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKIL------QGLIMDVLRVLSSPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHH------HHHHHHHHHHcCcccccHHHHHHHHHHhhhh
Confidence 4 23445666766543 3345544444444332 1121111 3346667778888999999999998888876
Q ss_pred cChhhhhhhhhCCCHHHHHHHh-c------cCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHH
Q 000124 667 MRQDICGSLATDEIVNPCMRLL-T------SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSID 739 (2138)
Q Consensus 667 ~~~e~r~~Ive~GaV~~Lv~LL-~------dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~ 739 (2138)
++ +.+. ++..|-+-+ + +++..-|..-..+++..+..+++ ..+.+|+.|++.+.+.++.
T Consensus 347 sr--Nved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--------~aatvV~~ll~fisD~N~~ 411 (948)
T KOG1058|consen 347 SR--NVED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--------VAATVVSLLLDFISDSNEA 411 (948)
T ss_pred hc--cHHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--------HHHHHHHHHHHHhccCCHH
Confidence 31 1111 112222111 1 22334567777888888765554 3456899999999888766
Q ss_pred HHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHH-hCCCHHHHHHHHHHHHHhhhcC
Q 000124 740 AAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVL-AEGTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 740 Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL-~~~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
.....+..+.-... .|..|..|+. .++.-+ +-...++.+.|.|.++..|...
T Consensus 412 aas~vl~FvrE~iek~p~Lr~~ii~-----~l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 412 AASDVLMFVREAIEKFPNLRASIIE-----KLLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHH-----HHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 54444444433322 5666655533 444333 2356788999999999988753
No 240
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.75 E-value=0.2 Score=67.65 Aligned_cols=241 Identities=17% Similarity=0.194 Sum_probs=167.5
Q ss_pred HHHHHHHHHHhhcCchhHHHHh----hhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHh
Q 000124 408 QERVLEAMASLYGNIFLSQWVS----HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2138)
Q Consensus 408 r~~Aa~AL~~L~~n~~~~~~L~----e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL 483 (2138)
|.+=.+||--|.+--+++.|-. .-|..++.++||+++-.+.+...+..++.+-.-++..+.-+++.+|-..+++.+
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 4455555655554444444433 347789999999999999999999999886665477777888888888888877
Q ss_pred cC-C--chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCC
Q 000124 484 GL-S--SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGA 559 (2138)
Q Consensus 484 ~s-~--d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-d~~vre~Aa~aL~nLs~~sd~~r~~I~e~Ga 559 (2138)
.. . +++.|-.|+..|..++..-......-.+.+.+..=+..|.++ .+-.|.|.+-+|+.|=.+.++.|-.=.+.++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 65 2 457888999999999885444444445556666556667775 6888999999999998877777776667889
Q ss_pred cchhhhccccCChhHHHHHHHHHHHHHHhhc------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000124 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAAD------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2138)
Q Consensus 560 I~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l 633 (2138)
...|+.++.+.-|++|..|..+|+.+..... ...+...+.+ ++..+ ..++.+.
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l---~~~~~---------------~~E~~i~--- 702 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDL---DDERT---------------SIEDLII--- 702 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcc---hhhhh---------------hHHHHHH---
Confidence 9999999999999999999999998865310 1111111110 00000 0011111
Q ss_pred cccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhh
Q 000124 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC 672 (2138)
Q Consensus 634 ~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r 672 (2138)
.+...++.+++.+++-+|...+-+|..+..++..+.
T Consensus 703 ---~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 703 ---KGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHL 738 (1387)
T ss_pred ---hhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHh
Confidence 123567788888899999888888888877544433
No 241
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.71 E-value=0.12 Score=60.73 Aligned_cols=179 Identities=21% Similarity=0.265 Sum_probs=109.3
Q ss_pred hcCCHHHHHHHHHHHHHhccCc---hhHHHHHh--cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHH
Q 000124 94 RSGTPLAKVNVAATLSVLCKDE---DLRLKVLL--GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFV 168 (2138)
Q Consensus 94 ks~~~evr~~Aa~~L~~Ls~~e---~~r~~v~~--~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Iv 168 (2138)
.+.+-+.|..++.-|..+.... +....+.. ...+..+...+.+....+...|+.++..++..-. .+ -+.+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~--~~--~~~~- 91 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG--SH--FEPY- 91 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG--GG--GHHH-
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--Hh--HHHH-
Confidence 3456778888888887765433 22233221 1555677777777667788899999999986311 11 2222
Q ss_pred HcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC--chhHHHHHhCc-HHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000124 169 TEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD--GYWRATLEAGG-VDIIVGLLSSDNAAAQSNAASLLARLML 245 (2138)
Q Consensus 169 eaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e--~r~~aI~e~GG-I~~Lv~lL~s~s~evq~~A~~aL~nLs~ 245 (2138)
-...+|.|++.+.+++ +.++..|..+|..++.... .+ . ++.+...+.+.++.+|..++..|..+..
T Consensus 92 ~~~~l~~Ll~~~~~~~---~~i~~~a~~~L~~i~~~~~~~~~--------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSK---KFIREAANNALDAIIESCSYSPK--------ILLEILSQGLKSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp HHHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS-H--H--------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHCCcHHH--------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3348899999998765 5789999999999998654 22 2 4566667788899999999999999885
Q ss_pred hcCCCcchhhcc----chHHHHHHHhccCCCHhHHHHHHHHHHHHhhc
Q 000124 246 AFGDSIPTVIDS----GAVKALVQLVGQNNDISVRASAADALEALSSK 289 (2138)
Q Consensus 246 ~~~e~r~~l~~~----GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~ 289 (2138)
..+.....+... ..++.+...+. +.+.++|..|..++..+...
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWALYSH 207 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHHH
T ss_pred HccchHhhhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHH
Confidence 544222333333 35666666666 78889999999999988664
No 242
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.66 E-value=0.014 Score=71.53 Aligned_cols=138 Identities=20% Similarity=0.290 Sum_probs=107.1
Q ss_pred CCchh--hhhhhhhhcCCce----EEEEEeccccc--cc-ccCCCCceEEEEecCC-CCc---cccccccCCCCCccccc
Q 000124 1994 PPSFH--ERADSLLHCLPGC----LTVTIKRGNNL--KQ-TMGTTNAFCRLTIGNG-PPR---QTKVVSHSISPEWKEGF 2060 (2138)
Q Consensus 1994 ~~~~~--~~~~~~~~~~~g~----l~v~v~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~---~t~~~~~~~~p~w~~~f 2060 (2138)
+|-|| -|+--.++|++|+ |-.+|.++.++ .+ . +|-|-|++++|--- ..+ ||+||+.+-.|.++|.|
T Consensus 345 ~Pkfhye~R~fq~v~~f~dl~d~elel~ivrg~~~pvp~gp-~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~f 423 (523)
T KOG3837|consen 345 APKFHYETRAFQQVAFFEDLKDQELELAIVRGQKNPVPGGP-MHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDF 423 (523)
T ss_pred CCcchhhhhhcchhhhccccchhHhHHHHhhcccCCCCCCc-hhHHhhhcccccccccccccCccceeeCCCCCCcccce
Confidence 56666 4666778999986 55677777666 55 5 88999999998311 122 69999999999999998
Q ss_pred eeeecCCC-CCC---------eEEEEEeecCCC--CCcccceEEEEecceeecceecceeecCCCCCCCCCccceEEEEE
Q 000124 2061 TWAFDVPP-KGQ---------KLHIICKSKNTF--GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2061 ~~~~~~~p-~~~---------~l~~~~~~~~~~--~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
-...--+| .|. -+.+|+..|+.| ...-+|.|.|.|.+.=+.-+|-+.|.|.|. +.-.-++|++.++
T Consensus 424 klni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG--RK~vGGkLevKvR 501 (523)
T KOG3837|consen 424 KLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG--RKAVGGKLEVKVR 501 (523)
T ss_pred eeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc--ccccCCeeEEEEE
Confidence 87776644 333 267999999998 455689999999999999999999999998 6556678888887
Q ss_pred ecCCCC
Q 000124 2129 WSNRIS 2134 (2138)
Q Consensus 2129 w~~~~~ 2134 (2138)
-.+-.+
T Consensus 502 iR~Pi~ 507 (523)
T KOG3837|consen 502 IRQPIG 507 (523)
T ss_pred Eecccc
Confidence 766544
No 243
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.53 E-value=0.09 Score=61.74 Aligned_cols=185 Identities=18% Similarity=0.165 Sum_probs=112.8
Q ss_pred cCCchhhHHHHHHHHHHHhhcC--chhHHHHHh--cCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCC-hhHHHHHHHcC
Q 000124 484 GLSSEQHQEYAVQLIAILTEQV--DDSKWAITA--AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS-EDIRACVESAG 558 (2138)
Q Consensus 484 ~s~d~~Vr~~Aa~aL~nLa~~s--~e~r~~I~~--aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~s-d~~r~~I~e~G 558 (2138)
.+.+...|..++.-|..+...+ .+....+.. ...+..+...+.+....+...|+.++..++..- ...... -..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HHH
Confidence 4567788888888888888754 222222221 145556666677767778888888888886521 112222 244
Q ss_pred CcchhhhccccCChhHHHHHHHHHHHHHHhhc--hhh-HHHHHHHhcCCCcchHHHHHHHHHHHHhhhc-chHHHHhhhc
Q 000124 559 AVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--SAT-INQLLALLLGDSPSSKAHVIKVLGHVLTMAL-QEDLVQKGSA 634 (2138)
Q Consensus 559 aI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e--~~a-I~~Li~LL~~~d~~V~~~A~~AL~~La~~~~-~~d~v~~~l~ 634 (2138)
.+|.|++.+.+++..++..|..+|..+..... ... .+.+.....+.++.++..+++.+..+....+ ..........
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 67889999999999999999999999987744 445 5667777888889999999998888765433 1111111100
Q ss_pred ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh
Q 000124 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2138)
Q Consensus 635 ~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e 670 (2138)
-...++.+...+.++++++|+.|-.++..+....++
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 123578888899999999999999999998764333
No 244
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=18 Score=50.45 Aligned_cols=467 Identities=13% Similarity=0.101 Sum_probs=230.6
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCC-HHHHHHHHHHHHHhhhccchhhHHhhhc
Q 000124 395 LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMAT-ADVREYLILSLTKLCRREVGIWEAIGKR 473 (2138)
Q Consensus 395 LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss-~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ 473 (2138)
|..-+++.+.. ++-.++..++.+..... .-.....+...++++...+ ...--.++-+|+.++...-.....+ .
T Consensus 346 Lls~l~d~dt~-VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l--~ 419 (1133)
T KOG1943|consen 346 LLSALSDTDTV-VRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL--E 419 (1133)
T ss_pred HHHhccCCcch-hhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH--H
Confidence 33444555554 88899999999866543 1112234555666655433 5555677788888887532222111 2
Q ss_pred hhHHHHHHHhc--------CCchhhHHHHHHHHHHHhhcCchhHHH-HHhcCCchHHHHHhhhCCHHHHHHHHHHHHHH-
Q 000124 474 EGIQLLISLLG--------LSSEQHQEYAVQLIAILTEQVDDSKWA-ITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL- 543 (2138)
Q Consensus 474 ggIp~LV~LL~--------s~d~~Vr~~Aa~aL~nLa~~s~e~r~~-I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nL- 543 (2138)
..+|.++.-+. +....+|..|+..++.+++........ +...=.-..|...+-+.+-..|+.|..++...
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENV 499 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence 34566665552 224568999999999999854332111 11110111122233455667788777666544
Q ss_pred hcCC------------------------hhHHHHHHH-cCCcchhhhc-----cccCChhHHHHHHHHHHHHHHhh-c--
Q 000124 544 CCHS------------------------EDIRACVES-AGAVPAFLWL-----LKSGGPKGQDASAMALTKLIRAA-D-- 590 (2138)
Q Consensus 544 s~~s------------------------d~~r~~I~e-~GaI~aLv~L-----LkS~~~evq~~Aa~AL~nLs~~~-e-- 590 (2138)
+... ......+++ .|-...+++- +..-++.+++.++++|.+|+... +
T Consensus 500 GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~ 579 (1133)
T KOG1943|consen 500 GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYL 579 (1133)
T ss_pred ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhh
Confidence 2100 011222222 2333344421 33467899999999999987652 1
Q ss_pred -hhhHHHHHHHhcCCCcchHHHHHHHHHHHHh----hhc-chHHHHhhhcccch---hhHHHH-hhcCC-CHHHHHHHHH
Q 000124 591 -SATINQLLALLLGDSPSSKAHVIKVLGHVLT----MAL-QEDLVQKGSAANKG---LRSLVQ-VLNSS-NEENQEYAAS 659 (2138)
Q Consensus 591 -~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~----~~~-~~d~v~~~l~~~Ga---I~aLV~-LLks~-s~evre~Aa~ 659 (2138)
....++++......+.+.+.-..-+.+.+.. ..+ -....+..+ +|. ++.+.. ....+ ..-.+.....
T Consensus 580 a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i--~~l~~ii~~~~~~~~~rg~~~lmr~~~~~ 657 (1133)
T KOG1943|consen 580 ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRI--AGLLSIIPPICDRYFYRGQGTLMRQATLK 657 (1133)
T ss_pred cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHh--hhhhhhccHHHHHHhccchHHHHHHHHHH
Confidence 2456777777666666554443333332221 110 000011111 111 111111 11112 1234445555
Q ss_pred HHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcC-CH
Q 000124 660 VLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS-SI 738 (2138)
Q Consensus 660 ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~-s~ 738 (2138)
.+-++...........+.++--..+...+++.+ .+|..|..++..+.......|.... ...+...+.-+... +.
T Consensus 658 ~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~----~~li~~~ls~~~~~~~~ 732 (1133)
T KOG1943|consen 658 FIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEE----APLITRYLSRLTKCSEE 732 (1133)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhh----hHHHHHHHHHhcCchHH
Confidence 666665544444444444444344444454444 7888899999988762211111110 01223333333333 44
Q ss_pred HHHHHHHHHHHHhhC---CchHHHHHHhcCcHHHHHHHHhCC-CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHH
Q 000124 739 DAAETAVAALANLLS---DPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLT 814 (2138)
Q Consensus 739 ~Vr~eAl~ALaNLa~---~~e~r~~Ii~~g~L~~LV~LL~~~-~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~ 814 (2138)
.++.--..++.++-+ +-..++.+ ...+.....++ +++-|...+.++.+.+.... .......-......
T Consensus 733 ~~r~g~~lal~~lp~~~i~~~~q~~l-----c~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~---~~~~~~~~~k~~e~ 804 (1133)
T KOG1943|consen 733 RIRRGLILALGVLPSELIHRHLQEKL-----CKLVLELLPSDAWAEARQQNVKALAHVCKTVT---SLLFSESIEKFRET 804 (1133)
T ss_pred HHHHHHHHHHccCcHHhhchHHHHHH-----HHHHhccCcccccHHHHHHHHHHHHHHHHHHH---HhhccccHHHHHHH
Confidence 455444455555532 22223333 23333333334 67889999999988887531 00011111345666
Q ss_pred HHHhhcc------CCCCchhHHHHHHHHHHHhhcccCCcccCCcccccccCCCchHHHHH-hhhcCC---hHHHHHHHHH
Q 000124 815 LVDSLNA------MDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVC-CLAEGP---PPLQDKAIEI 884 (2138)
Q Consensus 815 LV~LL~s------~~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~-ll~~~~---~~vq~~Aiei 884 (2138)
|++.+++ |+-+.-.+.+|+.++-.+...-...... .+..+.+++. ++...- +.+|+-|..+
T Consensus 805 LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~l---------d~~~i~~~~~~~vqQ~veKIdrlre~a~~~ 875 (1133)
T KOG1943|consen 805 LLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLL---------DEDSINRIIRYFVQQAVEKIDRLRELAASA 875 (1133)
T ss_pred HHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccc---------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 7777763 3333446788887777665321111111 1222333333 333332 3357777777
Q ss_pred HHHhhcc
Q 000124 885 LSRLCGD 891 (2138)
Q Consensus 885 L~~L~~~ 891 (2138)
+..+.-.
T Consensus 876 ~~qi~~~ 882 (1133)
T KOG1943|consen 876 LNQIVVH 882 (1133)
T ss_pred Hhceeec
Confidence 7776554
No 245
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.30 E-value=1.1 Score=58.38 Aligned_cols=180 Identities=20% Similarity=0.180 Sum_probs=121.3
Q ss_pred HHHHHHHhccCchhHHHHHhcCChHHHHHhh---------cc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcH
Q 000124 104 VAATLSVLCKDEDLRLKVLLGGCIPPLLSLL---------KS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVV 173 (2138)
Q Consensus 104 Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL---------~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~I 173 (2138)
|+.+|+.++.+..+...+....++..|+++- .. .+.++...|+++|+|+-.. ++..|+.+++.|+.
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~----s~~aR~~~~~~~~~ 76 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFL----SPSARQIFVDLGLA 76 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhC----CHHHHHHHHHcCcH
Confidence 3556777788877777777777777777766 33 5899999999999999983 67889999999999
Q ss_pred HHHHHhhCCCCCC--ChhHHHHHHHHHHHHhcCCC-chhHHHHHhCcHHHHHHhhccC-----------------CHHHH
Q 000124 174 PTLWDQLNPKNKQ--DNVVQGFVTGALRNLCGDKD-GYWRATLEAGGVDIIVGLLSSD-----------------NAAAQ 233 (2138)
Q Consensus 174 p~Ll~LL~s~s~e--d~~V~e~Al~aL~nLcs~~e-~r~~aI~e~GGI~~Lv~lL~s~-----------------s~evq 233 (2138)
+.+++.|...... ...+.....+.|.-++.... .+...+-+.+|++.+...|... +....
T Consensus 77 ~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l 156 (446)
T PF10165_consen 77 EKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEAL 156 (446)
T ss_pred HHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHH
Confidence 9999999876311 34467788888888876544 4444455568888888766541 22345
Q ss_pred HHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhcc--------CCCHhHHHHHHHHHHHHhh
Q 000124 234 SNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQ--------NNDISVRASAADALEALSS 288 (2138)
Q Consensus 234 ~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s--------~sd~~vr~~Aa~aL~nLs~ 288 (2138)
..++++++|+....+.... -.....++.++.++.+ .........+..+|.|+..
T Consensus 157 ~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl 218 (446)
T PF10165_consen 157 SEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPL 218 (446)
T ss_pred HHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCCh
Confidence 6778888888743333222 1233445555555431 1223455666666666643
No 246
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.21 E-value=0.034 Score=50.72 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 738 IDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 738 ~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
+.+|..|+.+|++++........-.....++.|..++.++++.||.+|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999986544333335667999999999999999999999999875
No 247
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=0.037 Score=70.05 Aligned_cols=104 Identities=28% Similarity=0.461 Sum_probs=87.5
Q ss_pred CCce----EEEEEeccccc-ccccCCCCceEEEEecCCCC-----cc--ccccccCCCCCccccceeee--cCCCCCCeE
Q 000124 2008 LPGC----LTVTIKRGNNL-KQTMGTTNAFCRLTIGNGPP-----RQ--TKVVSHSISPEWKEGFTWAF--DVPPKGQKL 2073 (2138)
Q Consensus 2008 ~~g~----l~v~v~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~--t~~~~~~~~p~w~~~f~~~~--~~~p~~~~l 2073 (2138)
-||. .+|.|..|||| -|.-|---|||.+++ -||. || ||--++|-.|-+||+|+|.+ |..|-+=.|
T Consensus 1119 hpgtgehkvtvkvvaandlkwqtsgmFrPFVEV~i-vGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL 1197 (1283)
T KOG1011|consen 1119 HPGTGEHKVTVKVVAANDLKWQTSGMFRPFVEVHI-VGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYEL 1197 (1283)
T ss_pred CCCCCcceEEEEEEecccccchhccccccceEEEE-ecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEE
Confidence 4664 78888999999 455588899999999 6652 23 99999999999999999998 678899999
Q ss_pred EEEEeecCCC--CCcccceEEEEecceeecceecceeecCCC
Q 000124 2074 HIICKSKNTF--GKSTLGKVTIQIDKVVTEGVYSGLFNLNHD 2113 (2138)
Q Consensus 2074 ~~~~~~~~~~--~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~ 2113 (2138)
|+-|+|- -| -...+|--.|+|.+|+..|.+.-+|+|-..
T Consensus 1198 ~~~VKDY-CFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1198 QFCVKDY-CFAREDRVVGLAVLQLRSVADKGSCACWVPLGRR 1238 (1283)
T ss_pred EEeehhh-eeecccceeeeeeeehhhHhhcCceeEeeecccc
Confidence 9999985 34 445789999999999999999999998644
No 248
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.18 E-value=8.7 Score=52.55 Aligned_cols=331 Identities=17% Similarity=0.121 Sum_probs=184.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcC
Q 000124 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516 (2138)
Q Consensus 437 LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aG 516 (2138)
++....+.+.++++-.-..|...+...++.. + -.++.+..=++++|+.+|..|++.++.+-.. + + -..
T Consensus 60 ViK~~~trd~ElKrL~ylYl~~yak~~P~~~--l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~--e----l-~~~ 127 (757)
T COG5096 60 VIKNVATRDVELKRLLYLYLERYAKLKPELA--L---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK--E----L-LGN 127 (757)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--H---HHHHHHHhhccCCCHHHHHHHHHHHHhcChH--H----H-HHH
Confidence 3444446677777777778888887655221 1 2467777788899999999999998887541 1 1 124
Q ss_pred CchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchh----
Q 000124 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSA---- 592 (2138)
Q Consensus 517 aIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~---- 592 (2138)
.++++.+++.++++.+|+.|+-++.++=. ..+..+.+.|.+..+..++.+.+|.+..+|..+|..+-.....+
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~---ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~ 204 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYR---LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLE 204 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHh---cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHH
Confidence 68899999999999999999999999853 22455667888888999999999999999999998885431111
Q ss_pred ---hHHHHHHHhcCCC-cchHHHHHHHHHHHHhh-hcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000124 593 ---TINQLLALLLGDS-PSSKAHVIKVLGHVLTM-ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2138)
Q Consensus 593 ---aI~~Li~LL~~~d-~~V~~~A~~AL~~La~~-~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~ 667 (2138)
.++.+.-+..... +-.+... +..|... ...++. ..+....+....++.++++-..++..+..+...
T Consensus 205 ~~~~i~~l~~~~~~~~~~~~~~~~---le~L~~~~~~~~~s------~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~ 275 (757)
T COG5096 205 VILRIPQLDLLSLSVSTEWLLLII---LEVLTERVPTTPDS------AEDFEERLSPPLQHNNAEVLLIAVKVILRLLVF 275 (757)
T ss_pred HHHHhhhccchhhhhhHHHHHHHH---HHHHHccCCCCCCc------HHHHHHhccchhhhCcHHHHHHHHHHHHHHhhh
Confidence 1111110000000 0011111 1111111 111110 011223333344556777777777766666553
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhh---hcCCHHHHHHH
Q 000124 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA---KTSSIDAAETA 744 (2138)
Q Consensus 668 ~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL---~s~s~~Vr~eA 744 (2138)
-+.+... .-.-++++.++..+ +......++-+..+.- ..+.. .+....++. ...+.-+..+-
T Consensus 276 ~~~~~~~---~~~~~~l~~Ll~~~-~~~~~~vl~~~~~~~l------~~~~k-----~~~~~~~~f~~~~~~~i~~~lek 340 (757)
T COG5096 276 LPSNNLF---LISSPPLVTLLAKP-ESLIQYVLRRNIQIDL------EVCSK-----LLDKVKKLFLIEYNDDIYIKLEK 340 (757)
T ss_pred hccccHH---HhhccHHHHHHcCC-HHHHHHHHHHhhHHHH------HhhHH-----HHHHHhhhhhhhccchHHHHHHH
Confidence 3332211 12234555555554 3333332222222211 01100 111112221 11223333445
Q ss_pred HHHHHHhhCCchHHHHHHhcCcHHHHHHHHhC--CCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhc
Q 000124 745 VAALANLLSDPDIAAEVLLEDVVSALTRVLAE--GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN 820 (2138)
Q Consensus 745 l~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~--~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~ 820 (2138)
...+..++.....-. .++.++.+..+ -+++.-+.+..+|+.+....+ ..-...+..+++++.
T Consensus 341 ~~~~t~l~~~~n~~~------~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~--------s~~~~~I~~~lel~~ 404 (757)
T COG5096 341 LDQLTRLADDQNLSQ------ILLELIYYIAENHIDAEMVSEAIKALGDLASKAE--------SSVNDCISELLELLE 404 (757)
T ss_pred HHHHhhcCCchhhHH------HHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhh--------hhHHHHHHHHHHhcc
Confidence 555555554332222 56667777777 688889999999998887421 111446677777776
No 249
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.07 E-value=7.6 Score=50.34 Aligned_cols=357 Identities=18% Similarity=0.184 Sum_probs=196.9
Q ss_pred HHHHHHHhcCCH---HHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCC-h
Q 000124 87 PLFISILRSGTP---LAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDD-H 161 (2138)
Q Consensus 87 p~LV~LLks~~~---evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd-~ 161 (2138)
|.+...|.+.++ .....++.+|..+|.+.+.-+.+.- ..+..+...... .+.+.....+.+|..+........ +
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 667777766543 6677889999999988776555542 223333333332 256666777888887765321101 1
Q ss_pred hhHHHHHHcCcHHHHHHhhCCCCCC----ChhHHHHHHHHHHHHhcCCC-chhHHHHHhCcHHHHHHhhc----------
Q 000124 162 VGMKIFVTEGVVPTLWDQLNPKNKQ----DNVVQGFVTGALRNLCGDKD-GYWRATLEAGGVDIIVGLLS---------- 226 (2138)
Q Consensus 162 ~gre~IveaG~Ip~Ll~LL~s~s~e----d~~V~e~Al~aL~nLcs~~e-~r~~aI~e~GGI~~Lv~lL~---------- 226 (2138)
.......+...+|.+.++....... +..+...+.+.+..++..-+ ..++.+ +..+..+..
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPFQP 155 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCCCc
Confidence 2334555666889888877543211 23455556666666655533 222222 223333222
Q ss_pred cCC--HHHHHHHHHHHHHH-HhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCH
Q 000124 227 SDN--AAAQSNAASLLARL-MLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGV 303 (2138)
Q Consensus 227 s~s--~evq~~A~~aL~nL-s~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL 303 (2138)
..+ ...+...+..+..+ +.-+++..-. .....+..++.+..+..+...+..+...+..+..+-+ +...+
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~-------~~~~l 227 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWP-------DDDDL 227 (415)
T ss_pred cccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCC-------ChhhH
Confidence 001 11223333333333 2223322211 2234777888887666667888888888877776511 01122
Q ss_pred HHHHHhhcCCchhhhhhhhhhhhHHHHHHHHHHhhcCc--------hhHHHHhhhhcCCCCchhhHHHHHHHHHHH-HHH
Q 000124 304 PVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGM--------PALVVYLGELSQSPRLAAPVADIIGALAYA-LMV 374 (2138)
Q Consensus 304 ~~LI~LL~s~s~e~mq~~~~~alqe~Al~ALanIsGgi--------s~LI~~L~elL~~~~ss~~~A~~L~aLa~~-l~~ 374 (2138)
+.+++...... ........+..+.+.+.|+..|. ...+..|.+++.+++....+++.++-+... ...
T Consensus 228 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~ 303 (415)
T PF12460_consen 228 DEFLDSLLQSI----SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDV 303 (415)
T ss_pred HHHHHHHHhhh----cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHh
Confidence 22222221100 00001114456777777775321 235667777888877777777777776654 222
Q ss_pred hhcCCC------CCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhh-chHHHHHHHHccCCHH
Q 000124 375 FEQKSG------VDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHA-EAKKVLIGLITMATAD 447 (2138)
Q Consensus 375 l~q~~~------~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~-~gI~~LV~LL~sss~e 447 (2138)
+..... +.++.|. .+.|.|+...+..+++ .|.....+|+.+..+-.-.-...+- ..++.++.-+...+.+
T Consensus 304 l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~ 380 (415)
T PF12460_consen 304 LNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDAD 380 (415)
T ss_pred cCccccchhhhHHhHHHHH--HHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 111011 1122221 3446777777776655 7888999999997764422222222 3578888888889999
Q ss_pred HHHHHHHHHHHhhhccc
Q 000124 448 VREYLILSLTKLCRREV 464 (2138)
Q Consensus 448 vq~~Aa~aL~~Ls~~s~ 464 (2138)
++..+..+|..+..+++
T Consensus 381 v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 381 VLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHcCH
Confidence 99999999998887753
No 250
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.07 E-value=1 Score=58.78 Aligned_cols=252 Identities=15% Similarity=0.098 Sum_probs=157.2
Q ss_pred HHHHhhcCchhHHHHhhhchHHHHHHHH----------ccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHh
Q 000124 414 AMASLYGNIFLSQWVSHAEAKKVLIGLI----------TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2138)
Q Consensus 414 AL~~L~~n~~~~~~L~e~~gI~~LV~LL----------~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL 483 (2138)
+|--+.+++.....+....++..|..+- ...+..+..+|..+|+|....++..+....+.|+.+.++..+
T Consensus 4 ~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~L 83 (446)
T PF10165_consen 4 TLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERL 83 (446)
T ss_pred HHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHH
Confidence 3344455556666667777777777665 335688999999999999999999999999999999999999
Q ss_pred cCC-----chhhHHHHHHHHHHHhhcCchhHHHHHhc-CCchHHHHHhhhC-----------------CHHHHHHHHHHH
Q 000124 484 GLS-----SEQHQEYAVQLIAILTEQVDDSKWAITAA-GGIPPLVQLLEAG-----------------SQKAREVAAHVL 540 (2138)
Q Consensus 484 ~s~-----d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~a-GaIp~LV~LLks~-----------------d~~vre~Aa~aL 540 (2138)
+.. +.++.....+.|--++....+.+..+.+. +++..++..|... +......+..++
T Consensus 84 k~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKll 163 (446)
T PF10165_consen 84 KNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLL 163 (446)
T ss_pred HcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHH
Confidence 866 67788888888888877667777777655 7777777765310 233456677888
Q ss_pred HHHhcCChhHHHHHHHcCCcchhhhccc-------c--CChhHHHHHHHHHHHHHHh-------------------hchh
Q 000124 541 WILCCHSEDIRACVESAGAVPAFLWLLK-------S--GGPKGQDASAMALTKLIRA-------------------ADSA 592 (2138)
Q Consensus 541 ~nLs~~sd~~r~~I~e~GaI~aLv~LLk-------S--~~~evq~~Aa~AL~nLs~~-------------------~e~~ 592 (2138)
.|++.+...... -.....++.++.++. + .......++..+|.|+--. .+..
T Consensus 164 FNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~ 242 (446)
T PF10165_consen 164 FNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMD 242 (446)
T ss_pred HHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChH
Confidence 999775433221 012344555544322 1 1235677888888877211 1123
Q ss_pred hHHHHHHHhcC-----CCcchHHHHHHHHHHHHhhhcchHHHHhh---------------hcc-cchhhHHHHhhcCCCH
Q 000124 593 TINQLLALLLG-----DSPSSKAHVIKVLGHVLTMALQEDLVQKG---------------SAA-NKGLRSLVQVLNSSNE 651 (2138)
Q Consensus 593 aI~~Li~LL~~-----~d~~V~~~A~~AL~~La~~~~~~d~v~~~---------------l~~-~GaI~aLV~LLks~s~ 651 (2138)
.+..|+.+|.. .+........-.|..|.......+..++. ..+ ...-..|+.++.+..+
T Consensus 243 ~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~ 322 (446)
T PF10165_consen 243 VVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDP 322 (446)
T ss_pred HHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCc
Confidence 45566666541 11111111222222222221111122222 112 2335679999988889
Q ss_pred HHHHHHHHHHHHHhh
Q 000124 652 ENQEYAASVLADLFS 666 (2138)
Q Consensus 652 evre~Aa~ALanL~s 666 (2138)
.+|..++..|..||.
T Consensus 323 ~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 323 QLKDAVAELLFVLCK 337 (446)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999986
No 251
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.11 Score=65.89 Aligned_cols=185 Identities=9% Similarity=0.029 Sum_probs=129.8
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChh
Q 000124 494 AVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPK 573 (2138)
Q Consensus 494 Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~e 573 (2138)
++..|..+++...--|..+.+....++|+++|.+++..+...+...++|+...-...++.+.+.|.+..|+.++.+.+..
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 34444455554345566677788899999999998888888889999999888888999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHhhch---------hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccc----hhh
Q 000124 574 GQDASAMALTKLIRAADS---------ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK----GLR 640 (2138)
Q Consensus 574 vq~~Aa~AL~nLs~~~e~---------~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~G----aI~ 640 (2138)
+|.+..|.|.++....+. -.+..++.+..+.+..++.++...|+++......++..+....+.. ..+
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 999999999988755321 2456678888888899999999999999764333222222211111 234
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000124 641 SLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD 678 (2138)
Q Consensus 641 aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~ 678 (2138)
.|+..++..++-.-+..+-.|.+++..+.+.+..+.++
T Consensus 569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q 606 (743)
T COG5369 569 RLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQ 606 (743)
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhH
Confidence 45555555555444444556666665455555444433
No 252
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.82 E-value=0.26 Score=66.58 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=125.4
Q ss_pred hHHHHHHHHcCCCChhHHHHHHHHHHHHh-hcCchhHHHHhhhchHHHHHHHHccC---CHHHHHHHHHHHHHhhhccch
Q 000124 390 QIEDILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMA---TADVREYLILSLTKLCRREVG 465 (2138)
Q Consensus 390 ~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L-~~n~~~~~~L~e~~gI~~LV~LL~ss---s~evq~~Aa~aL~~Ls~~s~~ 465 (2138)
||-|+..+||.+...+ +|.-.+-..+.+ +-++.++..+.+.+|..+.+..+..+ +++.+.-++..|+.++.+-+-
T Consensus 512 GIFPYVLKLLQS~a~E-LrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 512 GIFPYVLKLLQSSARE-LRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred chHHHHHHHhccchHh-hhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 6779999999998776 555444555565 56788888899988888888777652 357788888999999887555
Q ss_pred hhHHhhhchhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHh
Q 000124 466 IWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILC 544 (2138)
Q Consensus 466 ~~~~I~e~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs 544 (2138)
-+....+.+.+..-...++++ .+-.|+..+-+|+.|=...++.|+.=++.++-..|+.+|.++.+++|..|..+|+.+-
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL 670 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh
Confidence 556666677777777777775 5778999999999998867888998889999999999999999999999999999986
Q ss_pred cC
Q 000124 545 CH 546 (2138)
Q Consensus 545 ~~ 546 (2138)
..
T Consensus 671 ~~ 672 (1387)
T KOG1517|consen 671 SN 672 (1387)
T ss_pred cc
Confidence 53
No 253
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.68 E-value=0.04 Score=50.31 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 651 EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 651 ~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
+.+|..|+++|++++...++.... ....+++.|+.+|+|+++.||..|++||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999988755554444 5568899999999999999999999999875
No 254
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=94.45 E-value=0.078 Score=44.82 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=35.7
Q ss_pred chHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 000124 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2138)
Q Consensus 755 ~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~ 793 (2138)
++.+..+.+.|++++|++++.++++++++.|+++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 456778889999999999999999999999999999987
No 255
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=1.1 Score=59.29 Aligned_cols=265 Identities=18% Similarity=0.159 Sum_probs=146.2
Q ss_pred hHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000124 475 GIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2138)
Q Consensus 475 gIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~ 553 (2138)
...-|.+.|++. ++.+|..++-.|+-.+..+ .+ ......|-..|...+.-.-+.|.-+++-+.... ...+
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS-a~------~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt-~~~e- 484 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGS-AN------EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGT-ANQE- 484 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhccc-cc------HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCc-CcHH-
Confidence 456777777654 5566776666655433311 11 113445556666655555555554444443321 1111
Q ss_pred HHHcCCcchhhhccccC-ChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000124 554 VESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2138)
Q Consensus 554 I~e~GaI~aLv~LLkS~-~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~ 632 (2138)
++.-++...... -..+++..+..+.-.......++-+-+.+++.+.++-.+..-.-+++ +.. .+
T Consensus 485 -----aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~a--lAy--------~G 549 (929)
T KOG2062|consen 485 -----AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLA--LAY--------VG 549 (929)
T ss_pred -----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHH--HHH--------hc
Confidence 222233333322 23444444443332322223344455555666665544332111111 110 01
Q ss_pred hcccchhhHHHHh-hcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCC
Q 000124 633 SAANKGLRSLVQV-LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 633 l~~~GaI~aLV~L-Lks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALanLa~s~ 710 (2138)
-...++++.|.+. .++.++++|..|+.+|.-++..+|+.+ +..+.+|.+ -++.||-.||.||+-.+.+.
T Consensus 550 Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~---------~s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 550 TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL---------PSTVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred cCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhc---------hHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 1345678888887 566799999999999999988666554 456667765 58999999999999887632
Q ss_pred CcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKN 784 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~ 784 (2138)
+.+. ++..|-.|..+...-||+-|+-+++.+.. ++....+. .+..+.+.+.+.+.+++.-.+
T Consensus 621 ----G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~aK 684 (929)
T KOG2062|consen 621 ----GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDGMAK 684 (929)
T ss_pred ----CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHHHHH
Confidence 3332 34444455567778899999999887743 22222221 123445666777776654333
No 256
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.34 E-value=19 Score=46.76 Aligned_cols=347 Identities=17% Similarity=0.175 Sum_probs=177.1
Q ss_pred HHHHHccCCH---HHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcC-CchhhHHHHHHHHHHHhhcCchhH---
Q 000124 437 LIGLITMATA---DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSK--- 509 (2138)
Q Consensus 437 LV~LL~sss~---evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLa~~s~e~r--- 509 (2138)
++..+...+. ...+....+|..+|.+ ++....+.. .-+..+....+. .+.......+..|.++.....+..
T Consensus 4 ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~-~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~ 81 (415)
T PF12460_consen 4 LLALLPDSDSSTDSNYERILEALAALSTS-PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE 81 (415)
T ss_pred HHhhCCCCCCcchhHHHHHHHHHHHHHCC-hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence 4444444332 4566777888888877 333333321 222333333322 244555666667766654332222
Q ss_pred --HHHHhcCCchHHHHHhhhC-------CHHHHHHHHHHHHHHhcCC-hhHHHHHHHcCCcchhh--------hccccCC
Q 000124 510 --WAITAAGGIPPLVQLLEAG-------SQKAREVAAHVLWILCCHS-EDIRACVESAGAVPAFL--------WLLKSGG 571 (2138)
Q Consensus 510 --~~I~~aGaIp~LV~LLks~-------d~~vre~Aa~aL~nLs~~s-d~~r~~I~e~GaI~aLv--------~LLkS~~ 571 (2138)
....+...++.+.+..... ++.+...+..++..+...- .+.+..+. ......+. ..-.+..
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-DELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHccccccCCCCcccccc
Confidence 1112233666666654322 1344455555554444322 22222221 11111111 0001111
Q ss_pred hhHHHHHHHHHHHHHHh--h------chhhHHHHHHHhcC-CCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHH
Q 000124 572 PKGQDASAMALTKLIRA--A------DSATINQLLALLLG-DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSL 642 (2138)
Q Consensus 572 ~evq~~Aa~AL~nLs~~--~------e~~aI~~Li~LL~~-~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aL 642 (2138)
...+......+..+... + ..+.+..++++... +++..+..++++++.+..--...+.... .+..+
T Consensus 161 ~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~------~l~~~ 234 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDE------FLDSL 234 (415)
T ss_pred ccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHH------HHHHH
Confidence 11222222222222222 1 12355666666553 4466777788888877654222222211 23434
Q ss_pred HHhh-cCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcc------cc
Q 000124 643 VQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK------TT 715 (2138)
Q Consensus 643 V~LL-ks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~------d~ 715 (2138)
..-. .......+..+..++..++.+ --.|..-.....+..|+.++.+ +.+...|++++.-+....+.. ..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~Wi~Ka-Lv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~ 311 (415)
T PF12460_consen 235 LQSISSSEDSELRPQALEILIWITKA-LVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHAN 311 (415)
T ss_pred HhhhcccCCcchhHHHHHHHHHHHHH-HHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccch
Confidence 3333 233444455555555444431 1111111112345667777777 667788999998887631110 01
Q ss_pred ----hhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHH-HhcCcHHHHHHHHhCCCHHHHHHHHHHHH
Q 000124 716 ----NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEV-LLEDVVSALTRVLAEGTSEGKKNASRALH 790 (2138)
Q Consensus 716 ----~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~I-i~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~ 790 (2138)
.|+++. ..+++.|++..+..+.+.+..-+.||.++..+-...... .-+..+|.+++.+.-.+++++..+..+|.
T Consensus 312 vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~ 390 (415)
T PF12460_consen 312 VKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLK 390 (415)
T ss_pred hhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 122222 236778888888877778888999999998743321111 12447888999999899999999999999
Q ss_pred HhhhcC
Q 000124 791 QLLKHF 796 (2138)
Q Consensus 791 nL~~~~ 796 (2138)
.+..+.
T Consensus 391 ~~l~~~ 396 (415)
T PF12460_consen 391 MILEEA 396 (415)
T ss_pred HHHHcC
Confidence 999875
No 257
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.11 E-value=11 Score=47.47 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=141.4
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHH--HH-HhcCCchHHHHHhhhC--CHHHHHHHHHHHHHHh
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW--AI-TAAGGIPPLVQLLEAG--SQKAREVAAHVLWILC 544 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~--~I-~~aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs 544 (2138)
+...+.+..|+..+..-+.+.|+.++.+..++-....+.+. .+ .-..--|.++..|-.+ ++++--.+-..|+...
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECI 151 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 34456788899999888999999999999999886555543 11 1122324444444433 6777777778888887
Q ss_pred cCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-----------hhhHHHHHHHhcCCCcchHHHHH
Q 000124 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----------SATINQLLALLLGDSPSSKAHVI 613 (2138)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-----------~~aI~~Li~LL~~~d~~V~~~A~ 613 (2138)
. .+...+.+.....+-.+++....++-++...|-.++..+..... ........+|+.+++.-.+.++.
T Consensus 152 k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 152 K-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp T-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred h-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 6 46666677778888889999999999999999888887654311 23456788899999999999999
Q ss_pred HHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 614 ~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
.-|+.+.....+-....+-+.....+..+..++++.+..+|..|..++.-...
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 99999886666655555666777789999999999999999999998876665
No 258
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=93.95 E-value=0.19 Score=52.15 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhh--hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcC
Q 000124 490 HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE--AGSQKAREVAAHVLWILCCHSEDIRACVESAG 558 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLk--s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~G 558 (2138)
.|...+.+|+||+..+......+.+.|++|.++.... ..+|-+|+||..+++||+..+.++++.+.+-.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 3667889999999988999999999999999998764 44899999999999999999999999887543
No 259
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=93.90 E-value=0.073 Score=71.45 Aligned_cols=102 Identities=13% Similarity=0.267 Sum_probs=86.4
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCc-cccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCCC-Ccc
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPR-QTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KST 2087 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~~ 2087 (2138)
..|.|.+|-+| .|-+|..|||+.|.+||.... ++.-+.+++||+..+-|.+-+-.| ..-+|.|+|.++|.++ -+.
T Consensus 615 vrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp-~ek~l~v~vyd~D~~~~d~~ 693 (1105)
T KOG1326|consen 615 VRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLP-FEKDLIVEVYDHDLEAQDEK 693 (1105)
T ss_pred EEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccc-hhhcceeEEEEeecccccch
Confidence 77999999999 677799999999999776655 599999999999999999999987 8889999999999995 788
Q ss_pred cceEEEEecceeecceecceeecCCCCCCCCCccceE
Q 000124 2088 LGKVTIQIDKVVTEGVYSGLFNLNHDNNKDSSSRTLE 2124 (2138)
Q Consensus 2088 ~g~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 2124 (2138)
+|--+|.|. |-.|+.-++ ++|..++..
T Consensus 694 iget~iDLE--------nR~~T~~~a--~cglaq~y~ 720 (1105)
T KOG1326|consen 694 IGETTIDLE--------NRWLTRHRA--RCGLAQTYC 720 (1105)
T ss_pred hhceehhhh--------hcccCcCCc--ccCccceee
Confidence 898887764 345666666 777777665
No 260
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=93.79 E-value=0.16 Score=52.84 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc--CCchhhHHHHHHHHHHHhhcCchhHHHHHh
Q 000124 449 REYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG--LSSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2138)
Q Consensus 449 q~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~--s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~ 514 (2138)
+...+..+++++.+++.++..+.+.||+|.++.... ..+|-+|+.|+.+++||+..+++++..+..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 556778999999999999999999999999998774 557889999999999999988888876654
No 261
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.78 E-value=0.26 Score=53.76 Aligned_cols=116 Identities=23% Similarity=0.283 Sum_probs=79.8
Q ss_pred EEEEEecccccccccCCCCceEEEEecCCCCccc-----cccccCCCCCccccceeeecCCC--CC-----CeEEEEEee
Q 000124 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQT-----KVVSHSISPEWKEGFTWAFDVPP--KG-----QKLHIICKS 2079 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-----~~~~~~~~p~w~~~f~~~~~~~p--~~-----~~l~~~~~~ 2079 (2138)
+.|+|++.+++-.. +-.+.+..++|+.+++ ++..++-.=.|||+|.+.+--.- .+ -.+++.|..
T Consensus 9 ~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~ 84 (143)
T PF10358_consen 9 FDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFE 84 (143)
T ss_pred EEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEE
Confidence 67899999988773 6777777878888632 23334445589999998764321 21 246677777
Q ss_pred cCCCCCc-ccceEEEEecceeec--ceecceeecCCCCCCCCCccceEEEEEecCCCC
Q 000124 2080 KNTFGKS-TLGKVTIQIDKVVTE--GVYSGLFNLNHDNNKDSSSRTLEIEIIWSNRIS 2134 (2138)
Q Consensus 2080 ~~~~~k~-~~g~~~~~~~~v~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~ 2134 (2138)
...-|+. .+|++.|+|++.+.. +.....|.|.+. +++ .-+|.|.++...-.+
T Consensus 85 ~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~-~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 85 VDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKS-NATLSISISLSELRE 139 (143)
T ss_pred ecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCC-CcEEEEEEEEEECcc
Confidence 6545554 999999999999995 689999999988 222 233556666555433
No 262
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.73 E-value=2.3 Score=59.14 Aligned_cols=254 Identities=13% Similarity=0.079 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh------ch-----hhHHHH
Q 000124 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA------DS-----ATINQL 597 (2138)
Q Consensus 529 d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~------e~-----~aI~~L 597 (2138)
....|..|.+.|..|+..-+.--.+ ...+|-++.++.+..+++|..|..+|..+...- +. =..|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~L---DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKL---DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHH---hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 5677888889998887643221111 346888899999999999999999998876441 11 145778
Q ss_pred HHHhcC-CCcchHHHHHHHHHHHHhhhcchHHHHhhhcc-----------------cch-------h-hHHHHhhcCCCH
Q 000124 598 LALLLG-DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA-----------------NKG-------L-RSLVQVLNSSNE 651 (2138)
Q Consensus 598 i~LL~~-~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~-----------------~Ga-------I-~aLV~LLks~s~ 651 (2138)
-.|+.+ ....++..-+.+|+.|+..+..--.....+.. ... + +..+.++..+.+
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 888888 55566766677777775432210000000000 001 1 222235555566
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHh
Q 000124 652 ENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIK 731 (2138)
Q Consensus 652 evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~ 731 (2138)
-+|..-...+.-||..-. +.-.+.=++..|+.+|.|.+...|..--..+.-++. .. +.| -.+...+|.|..
T Consensus 593 ~Vkr~Lle~i~~LC~FFG---k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi--~V--G~r--s~seyllPLl~Q 663 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFG---KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSI--FV--GWR--SVSEYLLPLLQQ 663 (1431)
T ss_pred HHHHHHHHHHHHHHHHhh---hcccccchHHHHHHHhcCccHHHHHHHHhhccceEE--EE--eee--eHHHHHHHHHHH
Confidence 788877777777765311 011123367899999999988887644333333322 11 222 134556777777
Q ss_pred hhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 732 LAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 732 LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
-|.++.+.|...|+.+|..|....-.++..+. +.+.....+|-..+.=+|+.++..+......
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 88899999999999999998865444443221 2334444566677888999999988877654
No 263
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.40 E-value=0.97 Score=61.25 Aligned_cols=165 Identities=22% Similarity=0.230 Sum_probs=115.6
Q ss_pred cccCChhH-HHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH
Q 000124 567 LKSGGPKG-QDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ 644 (2138)
Q Consensus 567 LkS~~~ev-q~~Aa~AL~nLs~~~e-~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~ 644 (2138)
+.+.+... ....-.++..++...+ ....+.+++.....+.+++....-.+-..+...+ +... + ++..+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~l--L----avNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELAL--L----AVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHH--H----HHHHHHh
Confidence 34444433 3344455666665544 3345667777777777877766555554433222 1111 1 4677777
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcC
Q 000124 645 VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEG 724 (2138)
Q Consensus 645 LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G 724 (2138)
=++++++.+|-.|.+.+..|-. ++. -..+++++.+++.++++.||+.|+-|+.++-+- .+....+.|
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~--~el-----~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l------d~~l~~~~g 166 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRV--KEL-----LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL------DKDLYHELG 166 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcCh--HHH-----HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc------CHhhhhccc
Confidence 7888999999999999887754 222 234678999999999999999999999999762 223456778
Q ss_pred ChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 725 DVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 725 ~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
.+..+..++.+.++.|..+|+.+|..+-
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 8999999999999999999999998874
No 264
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.20 E-value=2.4 Score=58.94 Aligned_cols=290 Identities=16% Similarity=0.092 Sum_probs=175.3
Q ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcC---chhHH
Q 000124 435 KVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV---DDSKW 510 (2138)
Q Consensus 435 ~~LV~LL~s-ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s---~e~r~ 510 (2138)
.++...++. ...+.+..|...|..++....+ -.. -...+|-++.++.++...||..|+..|+.+.... +..-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d-e~~--LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD-EVK--LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch-HHH--HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 333333333 4567788899999988875321 111 2456899999999999999999999998875422 22333
Q ss_pred HHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhcCChhHH---HHHHHcCCcchhhhcccc-CChhHHHH-HHHHHHH
Q 000124 511 AITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIR---ACVESAGAVPAFLWLLKS-GGPKGQDA-SAMALTK 584 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~~sd~~r---~~I~e~GaI~aLv~LLkS-~~~evq~~-Aa~AL~n 584 (2138)
.+.-+=.+|.|-.++.+ ....+|..-|..|..|+......- ..+...|..... .+ +.++.+.. -..+|..
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~----nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDP----NSETAPEQNYNTELQALHH 577 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCc----ccccccccccchHHHHHHH
Confidence 44455567888888887 456667777777777765221111 111112211111 11 11111111 1111111
Q ss_pred HHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHH
Q 000124 585 LIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664 (2138)
Q Consensus 585 Ls~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL 664 (2138)
. +-.....|+.+.++.|+....+.+.-|...-.... ...=.++.|+.+|++.++..|-.=..-+..+
T Consensus 578 ~-------V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k------sND~iLshLiTfLNDkDw~LR~aFfdsI~gv 644 (1431)
T KOG1240|consen 578 T-------VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK------SNDVILSHLITFLNDKDWRLRGAFFDSIVGV 644 (1431)
T ss_pred H-------HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc------cccchHHHHHHHhcCccHHHHHHHHhhccce
Confidence 1 12335667778888888888888887765411110 0111378899999999888876444444433
Q ss_pred hhcChhhhhhh-hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHH
Q 000124 665 FSMRQDICGSL-ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743 (2138)
Q Consensus 665 ~s~~~e~r~~I-ve~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~e 743 (2138)
+.. .+.. +++..+|-|.+-|.|+.+.|...|.++|.-|..... .+ ...-..+++...-+|..++..+|..
T Consensus 645 si~----VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l----l~-K~~v~~i~~~v~PlL~hPN~WIR~~ 715 (1431)
T KOG1240|consen 645 SIF----VGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL----LR-KPAVKDILQDVLPLLCHPNLWIRRA 715 (1431)
T ss_pred EEE----EeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc----cc-hHHHHHHHHhhhhheeCchHHHHHH
Confidence 321 1111 456778888889999999999999999998886211 11 1112234555566777899999999
Q ss_pred HHHHHHHhhC
Q 000124 744 AVAALANLLS 753 (2138)
Q Consensus 744 Al~ALaNLa~ 753 (2138)
++..+...+.
T Consensus 716 ~~~iI~~~~~ 725 (1431)
T KOG1240|consen 716 VLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHh
Confidence 9998887653
No 265
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=92.97 E-value=0.18 Score=42.57 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=35.5
Q ss_pred hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 000124 669 QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2138)
Q Consensus 669 ~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa 707 (2138)
++++..+.+.|++++|++++.++++.++..|+++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999999999999999999986
No 266
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=0.55 Score=59.88 Aligned_cols=180 Identities=12% Similarity=0.105 Sum_probs=133.7
Q ss_pred cchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHH
Q 000124 624 LQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARAL 703 (2138)
Q Consensus 624 ~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~AL 703 (2138)
.+....+.++.+....+.|++++..++..+.-.+...++|+..--...+....+.+++..|+.++.+.++..+....|.+
T Consensus 418 rSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvl 497 (743)
T COG5369 418 RSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVL 497 (743)
T ss_pred HHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhh
Confidence 33445666778888899999999876666677778888888765556677788899999999999999999999999999
Q ss_pred HHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchH----HHHHH---hcC-cHHHHHHHHh
Q 000124 704 GALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDI----AAEVL---LED-VVSALTRVLA 775 (2138)
Q Consensus 704 anLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~----r~~Ii---~~g-~L~~LV~LL~ 775 (2138)
+++...... ..+......-++..++++-++++..|+.+....|.|+.++..- ..... ... ....|...+.
T Consensus 498 rHlmyncq~--~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e 575 (743)
T COG5369 498 RHLMYNCQK--NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYE 575 (743)
T ss_pred hhhhhcCcc--hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHH
Confidence 999874433 4555667777889999999999999999999999999874322 11111 111 3556777788
Q ss_pred CCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhh
Q 000124 776 EGTSEGKKNASRALHQLLKHFPVGDVLKGNAQC 808 (2138)
Q Consensus 776 ~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~ 808 (2138)
+.+|..-...+..|.+++... +.....+.+
T Consensus 576 ~~np~~i~~~~yilv~~aa~d---~~l~~~V~~ 605 (743)
T COG5369 576 ENNPMEILEGCYILVRNAACD---DTLDYIVQS 605 (743)
T ss_pred hcCchhhhhhHHHHHHHHhcc---chHHHHHHh
Confidence 888876666677777777653 344444444
No 267
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.73 E-value=1.3 Score=53.74 Aligned_cols=220 Identities=20% Similarity=0.131 Sum_probs=130.2
Q ss_pred hhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcccc--CChhHHHHHHHHHHHHHHhhc--------hhhHH
Q 000124 526 EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS--GGPKGQDASAMALTKLIRAAD--------SATIN 595 (2138)
Q Consensus 526 ks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS--~~~evq~~Aa~AL~nLs~~~e--------~~aI~ 595 (2138)
+.-++-++--|..+|.++....+.......+...-..++++++. +..++|++..-.++-++..+. .+.+.
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~ 238 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33355567778888888877544333333444455677777765 557899999999998886643 23445
Q ss_pred HHHHHhcCCCcchHHHHHH-HHHHHHhhh--cchHHHHhhhcccchhhHHHHhhc-CC--CHHHHHHHHHHHHHH-----
Q 000124 596 QLLALLLGDSPSSKAHVIK-VLGHVLTMA--LQEDLVQKGSAANKGLRSLVQVLN-SS--NEENQEYAASVLADL----- 664 (2138)
Q Consensus 596 ~Li~LL~~~d~~V~~~A~~-AL~~La~~~--~~~d~v~~~l~~~GaI~aLV~LLk-s~--s~evre~Aa~ALanL----- 664 (2138)
-|+++.+.. .++.+.+ |++.++... .+++.+...+..++ +.+-++.+. .+ +++.+...-..=..|
T Consensus 239 dli~iVk~~---~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~-~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 239 DLIAIVKER---AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND-ISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhcccccchhhhhHhhcc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 566666543 2333222 344444332 33344444433333 344444443 32 455443322211111
Q ss_pred --hh----------c----Ch---------hhhhhhhhC--CCHHHHHHHhccCCHH-HHHHHHHHHHHhcCCCCcccch
Q 000124 665 --FS----------M----RQ---------DICGSLATD--EIVNPCMRLLTSNTQM-VATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 665 --~s----------~----~~---------e~r~~Ive~--GaV~~Lv~LL~dgs~~-Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
|. + +| .+...+.+. .+++.|.++++.+++. .-.-|+.-+..+.+..| +.
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P---E~ 391 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP---EI 391 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc---hH
Confidence 11 1 11 122223333 4678889999887775 33446666677766545 46
Q ss_pred hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000124 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa 752 (2138)
+..+.+.|+=..+++++++++++|+-+|+.|+..+.
T Consensus 392 ~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 392 NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 677888999999999999999999999999998664
No 268
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=3.3 Score=55.10 Aligned_cols=274 Identities=15% Similarity=0.134 Sum_probs=162.1
Q ss_pred CCchHHHHHhhhC-CHHHHHHHHHHHHH--HhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh-hch
Q 000124 516 GGIPPLVQLLEAG-SQKAREVAAHVLWI--LCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA-ADS 591 (2138)
Q Consensus 516 GaIp~LV~LLks~-d~~vre~Aa~aL~n--Ls~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~-~e~ 591 (2138)
+.+..|.+.|++. ++.++.-++-.|+- ++..+.++ ...+-+++..++.-.-+.|.-+.+-+.-. ...
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~ei---------Ye~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~ 483 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEI---------YEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ 483 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhcccccHHH---------HHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH
Confidence 4667888888877 56667766655544 33333222 22344556666655556666665544322 234
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHH-HhhcCCCHHHHHHHHHH--HHHHhhcC
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLV-QVLNSSNEENQEYAASV--LADLFSMR 668 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV-~LLks~s~evre~Aa~A--LanL~s~~ 668 (2138)
+++..+........ .+...+.|+.=... . .....+.-..++ +++.+.++-.|...+-. ++....+
T Consensus 484 eaiedm~~Ya~ETQ---Heki~RGl~vGiaL---~-----~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg- 551 (929)
T KOG2062|consen 484 EAIEDMLTYAQETQ---HEKIIRGLAVGIAL---V-----VYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG- 551 (929)
T ss_pred HHHHHHHHHhhhhh---HHHHHHHHHHhHHH---H-----HhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-
Confidence 55555555544332 23333444321111 0 011122334444 46667788788765543 3333332
Q ss_pred hhhhhhhhhCCCHHHHHHH-hccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh-cCCHHHHHHHHH
Q 000124 669 QDICGSLATDEIVNPCMRL-LTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-TSSIDAAETAVA 746 (2138)
Q Consensus 669 ~e~r~~Ive~GaV~~Lv~L-L~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~-s~s~~Vr~eAl~ 746 (2138)
+.++|..|+.. .+|.+++||+.|.-||+-+....++ ..+..+.+|. +.++.||--++.
T Consensus 552 --------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------------~~~s~V~lLses~N~HVRyGaA~ 611 (929)
T KOG2062|consen 552 --------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------------QLPSTVSLLSESYNPHVRYGAAM 611 (929)
T ss_pred --------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh------------hchHHHHHHhhhcChhhhhhHHH
Confidence 24567777777 5788999999999999988763332 4555666665 578999999999
Q ss_pred HHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCc
Q 000124 747 ALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNG 826 (2138)
Q Consensus 747 ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~ 826 (2138)
+|+.-+.....+. ++..|..+..+...-||+.|.-+++-+...+. +...- .-.+....+.....+.+++.
T Consensus 612 ALGIaCAGtG~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t--~~~~p--kv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 612 ALGIACAGTGLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT--EQLCP--KVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHhhhhcCCCcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc--cccCc--hHHHHHHHHHHHhhhhhhHH
Confidence 9998876555443 44557777788888999999999988765432 11110 11345556666666666666
Q ss_pred hhHHHHHHHHHHHh
Q 000124 827 TDVADALEVVALLA 840 (2138)
Q Consensus 827 ~~~~~AL~ALa~La 840 (2138)
-.+.-|.-+-|.+-
T Consensus 682 ~aK~GAilAqGild 695 (929)
T KOG2062|consen 682 MAKFGAILAQGILD 695 (929)
T ss_pred HHHHHHHHHhhhhh
Confidence 56666655555543
No 269
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.42 E-value=1.6 Score=58.67 Aligned_cols=200 Identities=15% Similarity=0.059 Sum_probs=135.8
Q ss_pred HHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHH-HhccCchhHHHHHhcCChHHHHHhhccC-CHHHHHHHHHHHHHhh
Q 000124 76 RLLIGSHAQAMPLFISILRSGTPLAKVNVAATLS-VLCKDEDLRLKVLLGGCIPPLLSLLKSE-STDTRKAAAEALYEVS 153 (2138)
Q Consensus 76 k~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~-~Ls~~e~~r~~v~~~G~Ip~Lv~LL~se-d~eVr~aAa~AL~nLS 153 (2138)
+...++ .||...|+.+...+.+..+.....+|. .+.-.... ....++++.+.+... .-.-.-.++.++.||+
T Consensus 497 ~~~~Ik-~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 497 RAKKIK-PGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred cCcccc-ccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 334444 699999999999998998888888886 22211100 013345555555432 2222346778888888
Q ss_pred cCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHH-hCcHHHHHHhhccCCHHH
Q 000124 154 SGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE-AGGVDIIVGLLSSDNAAA 232 (2138)
Q Consensus 154 ~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e-~GGI~~Lv~lL~s~s~ev 232 (2138)
+. +...|+.+.++-+++.+-+.+...+ +.++..++..+.||..++.-..+.+.+ ..+.+....++....+..
T Consensus 571 s~----s~s~r~~i~ke~~~~~ie~~~~ee~---~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~ 643 (748)
T KOG4151|consen 571 SI----SESDRQKILKEKALGKIEELMTEEN---PALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKF 643 (748)
T ss_pred Cc----chhhHHHHHHHhcchhhHHHhhccc---HHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHH
Confidence 63 5566777888888887666655443 568899999999999988766666776 567888888888877778
Q ss_pred HHHHHHHHHHHHhhcCCCcch-hhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhc
Q 000124 233 QSNAASLLARLMLAFGDSIPT-VIDSGAVKALVQLVGQNNDISVRASAADALEALSSK 289 (2138)
Q Consensus 233 q~~A~~aL~nLs~~~~e~r~~-l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~ 289 (2138)
..++++++..+.......+.. .........+..++. +.+..++........|+...
T Consensus 644 ~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~-~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 644 ELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQ-DEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred hhhccccccchhhcchhhhhhHHHhhcchHHHHHhhc-CchhhhhhhhhhhhhhHHHH
Confidence 888888888777555555553 223345566666666 45668888888887775443
No 270
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.39 E-value=4 Score=50.80 Aligned_cols=188 Identities=22% Similarity=0.248 Sum_probs=105.3
Q ss_pred hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc--ChhhhhhhhhC
Q 000124 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM--RQDICGSLATD 678 (2138)
Q Consensus 601 L~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~--~~e~r~~Ive~ 678 (2138)
+.+.....++.+.+.+..++......+.+... ....+..+...++.++.+-+..|++++.-++-. ..+....+.+
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~--~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~- 128 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDR--RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE- 128 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-
Confidence 33333444555555554444332233333222 122467777788888776677777777766553 2233344333
Q ss_pred CCHHHHHHHhccCCH--HHHHHHHHHHHHhcC-CCCcccchhhhHHhcCChhhH--Hhhhh----------cCCHHHHHH
Q 000124 679 EIVNPCMRLLTSNTQ--MVATQSARALGALSR-PTKTKTTNKMSYIAEGDVKPL--IKLAK----------TSSIDAAET 743 (2138)
Q Consensus 679 GaV~~Lv~LL~dgs~--~Vk~~AA~ALanLa~-s~~~~d~~r~~I~~~G~V~~L--v~LL~----------s~s~~Vr~e 743 (2138)
...+.|.+.+.+++. ..|..++.||+-++. .....+.....+ ..+..+ ....+ .+++.+...
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~---~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM---ESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH---HHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 466788888888764 456677777776654 111100111000 011100 00111 123567788
Q ss_pred HHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 744 AVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 744 Al~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
|+.+-+.|.. -|...-.-.-...+|.|+.+|.+.+..||..|.++|+=|..
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8888877765 23322222234579999999999999999999999986654
No 271
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.09 E-value=7.7 Score=47.44 Aligned_cols=265 Identities=10% Similarity=0.056 Sum_probs=146.0
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhh-hchHHHHHHHHcc--CCHHHHHHHHHHHHHhhhccchhhHH
Q 000124 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH-AEAKKVLIGLITM--ATADVREYLILSLTKLCRREVGIWEA 469 (2138)
Q Consensus 393 ~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e-~~gI~~LV~LL~s--ss~evq~~Aa~aL~~Ls~~s~~~~~~ 469 (2138)
++|.+++..-+. ..+..|++++.++.-.++-+..++. ..+-..++.+++. +..+.|.+..-++..++.+ +....-
T Consensus 152 eyLgkl~Q~i~~-lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqd 229 (432)
T COG5231 152 EYLGKLSQLIDF-LTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQD 229 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHH
Confidence 455555544433 3788888999998777766655443 3455667777765 4578888988888888887 333332
Q ss_pred hhh-chhHHHHHHHhcCC-chhhHHHHHHHHHHHhhcCc-hhHHHHHhcCCchHHHHHhhhC---CHHHHHHHHHHHHHH
Q 000124 470 IGK-REGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVD-DSKWAITAAGGIPPLVQLLEAG---SQKAREVAAHVLWIL 543 (2138)
Q Consensus 470 I~e-~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLa~~s~-e~r~~I~~aGaIp~LV~LLks~---d~~vre~Aa~aL~nL 543 (2138)
|-+ ..-+..|+++.+.. .+.+-+-++.++.|++...+ +.-..+...|-+.+-++.|... |.+++...-..=..|
T Consensus 230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l 309 (432)
T COG5231 230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRL 309 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 221 23466677777643 45577778888888886322 3333344455555666666433 555544332222222
Q ss_pred hcCChhHHHHHHHcCCcchh-hhccccCChhHHH-HHHHHHHHHHHhhchhhHHHHHHHhcCCCcch-HHHHHHHHHHHH
Q 000124 544 CCHSEDIRACVESAGAVPAF-LWLLKSGGPKGQD-ASAMALTKLIRAADSATINQLLALLLGDSPSS-KAHVIKVLGHVL 620 (2138)
Q Consensus 544 s~~sd~~r~~I~e~GaI~aL-v~LLkS~~~evq~-~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V-~~~A~~AL~~La 620 (2138)
........- -+ .-+.-| -.++....+.... .--.-+ .....++..++..|.++++.+.+++ -..|++=++.+.
T Consensus 310 ~~~~k~l~~--fD-~Y~~ELdsg~l~wSp~H~~~dFWs~N~-d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~V 385 (432)
T COG5231 310 VQNTKKLCI--FD-NYLNELDSGRLEWSPYHHKKDFWSTNL-DMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLV 385 (432)
T ss_pred HhhhhhhhH--HH-HHHHHHhhCcccCCCcccccCchhhhH-HHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHH
Confidence 111110000 00 000001 0122221111110 000111 1122234567889999999888773 222344444443
Q ss_pred hhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 621 TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 621 ~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
... ++. ...+.+.|+=..+..+++++++++|-.|..++-.+.+
T Consensus 386 r~~--PE~-~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 386 RAS--PEI-NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhC--chH-HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 322 222 2335678888899999999999999999998876654
No 272
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=73 Score=45.06 Aligned_cols=249 Identities=18% Similarity=0.185 Sum_probs=136.7
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 000124 32 DDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGT-PLAKVNVAATLSV 110 (2138)
Q Consensus 32 ed~~~~~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~-~evr~~Aa~~L~~ 110 (2138)
|.++.+...+.++++.+++ .+...|=.|++-+..+....+ +.++- ..|...++++.-.+ +..=-.+|-+|..
T Consensus 334 dv~eivE~vie~Lls~l~d--~dt~VrWSaAKg~grvt~rlp--~~Lad---~vi~svid~~~p~e~~~aWHgacLaLAE 406 (1133)
T KOG1943|consen 334 DVPEIVEFVIEHLLSALSD--TDTVVRWSAAKGLGRVTSRLP--PELAD---QVIGSVIDLFNPAEDDSAWHGACLALAE 406 (1133)
T ss_pred ccHHHHHHHHHHHHHhccC--CcchhhHHHHHHHHHHHccCc--HHHHH---HHHHHHHHhcCcCCchhHHHHHHHHHHH
Confidence 3344444444555555544 444557778888888876654 34443 35677777665544 4555577888888
Q ss_pred hccC----chhHHHHHhcCChHHHHHhhccC--------CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHH-
Q 000124 111 LCKD----EDLRLKVLLGGCIPPLLSLLKSE--------STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLW- 177 (2138)
Q Consensus 111 Ls~~----e~~r~~v~~~G~Ip~Lv~LL~se--------d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll- 177 (2138)
|+.. ++... ..+|.+++-|..+ ...+|.+|+-.+|.++..-. +...+.+.+ ...+.|+
T Consensus 407 LA~rGlLlps~l~-----dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays---~~~l~p~l~-~L~s~LL~ 477 (1133)
T KOG1943|consen 407 LALRGLLLPSLLE-----DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYS---PSDLKPVLQ-SLASALLI 477 (1133)
T ss_pred HHhcCCcchHHHH-----HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCC---hhhhhHHHH-HHHHHHHH
Confidence 8643 11112 3356666666442 35689999999999997422 211222222 1222222
Q ss_pred HhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhcc
Q 000124 178 DQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDS 257 (2138)
Q Consensus 178 ~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~ 257 (2138)
..+-+. +-.++..|..++-...+...+. .-|++.+. ..+..+-..+.+|-.-++.-....+..+..
T Consensus 478 ~AlFDr---evncRRAAsAAlqE~VGR~~n~------p~Gi~Lis-~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~---- 543 (1133)
T KOG1943|consen 478 VALFDR---EVNCRRAASAALQENVGRQGNF------PHGISLIS-TIDYFSVTNRSNCYLDLCVSIAEFSGYREP---- 543 (1133)
T ss_pred HHhcCc---hhhHhHHHHHHHHHHhccCCCC------CCchhhhh-hcchhhhhhhhhHHHHHhHHHHhhhhHHHH----
Confidence 223222 2347778888888777653221 12555433 222222334555544444333233322222
Q ss_pred chHHHHHHH-hccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchh
Q 000124 258 GAVKALVQL-VGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKE 316 (2138)
Q Consensus 258 GaL~~LL~L-L~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e 316 (2138)
.+..++.. +. .-+..+|+.++.+|.+|+.. +.....+..++.|++....++..
T Consensus 544 -~f~~L~t~Kv~-HWd~~irelaa~aL~~Ls~~----~pk~~a~~~L~~lld~~ls~~~~ 597 (1133)
T KOG1943|consen 544 -VFNHLLTKKVC-HWDVKIRELAAYALHKLSLT----EPKYLADYVLPPLLDSTLSKDAS 597 (1133)
T ss_pred -HHHHHHhcccc-cccHHHHHHHHHHHHHHHHh----hHHhhcccchhhhhhhhcCCChH
Confidence 22233222 22 25789999999999998775 23344467788888877665543
No 273
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.84 E-value=63 Score=43.93 Aligned_cols=363 Identities=18% Similarity=0.185 Sum_probs=189.2
Q ss_pred HhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCc
Q 000124 93 LRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGV 172 (2138)
Q Consensus 93 Lks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~ 172 (2138)
|++++.-+|-..++.|+.|- +.-.....+|.+..+|.+.+..||+.|.-++..+.... + .++. +
T Consensus 108 LQHPNEyiRG~TLRFLckLk------E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~---~-----~L~p-D- 171 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLK------EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---E-----HLIP-D- 171 (948)
T ss_pred ccCchHhhcchhhhhhhhcC------cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---h-----hhcC-C-
Confidence 44566677888888887772 22233466788899999999999999999998888631 1 1111 1
Q ss_pred HHHHH-HhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccC---CHHHHHHHHHHHHHHHhhcC
Q 000124 173 VPTLW-DQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD---NAAAQSNAASLLARLMLAFG 248 (2138)
Q Consensus 173 Ip~Ll-~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~---s~evq~~A~~aL~nLs~~~~ 248 (2138)
.|.|+ +.|... .|+....+|.-.|. ..++.+ ++..+.....+- ++..+...+..+...|..++
T Consensus 172 apeLi~~fL~~e--~DpsCkRNAFi~L~---~~D~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p 238 (948)
T KOG1058|consen 172 APELIESFLLTE--QDPSCKRNAFLMLF---TTDPER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANP 238 (948)
T ss_pred hHHHHHHHHHhc--cCchhHHHHHHHHH---hcCHHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCH
Confidence 23333 333332 24445555544444 334444 556665555443 36778888888888775433
Q ss_pred CCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhHH
Q 000124 249 DSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQG 328 (2138)
Q Consensus 249 e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL~s~s~e~mq~~~~~alqe 328 (2138)
. .....+..+..+|.+. +..++-.|++.|..++.. +..-+.-. ..+++++.+.+..
T Consensus 239 ~-----~~~~~i~~i~~lL~st-ssaV~fEaa~tlv~lS~~-p~alk~Aa-----~~~i~l~~kesdn------------ 294 (948)
T KOG1058|consen 239 A-----EKARYIRCIYNLLSST-SSAVIFEAAGTLVTLSND-PTALKAAA-----STYIDLLVKESDN------------ 294 (948)
T ss_pred H-----HhhHHHHHHHHHHhcC-CchhhhhhcceEEEccCC-HHHHHHHH-----HHHHHHHHhccCc------------
Confidence 2 3445788888888854 568888888888888885 33322211 3344444332211
Q ss_pred HHHHHHHHhhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhHHH
Q 000124 329 HATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQ 408 (2138)
Q Consensus 329 ~Al~ALanIsGgis~LI~~L~elL~~~~ss~~~A~~L~aLa~~l~~l~q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr 408 (2138)
+......+-+.++... ....+ .+-+ --...++.+++-+ ++
T Consensus 295 ---------------------------nvklIvldrl~~l~~~----------~~~il-~~l~-mDvLrvLss~dld-vr 334 (948)
T KOG1058|consen 295 ---------------------------NVKLIVLDRLSELKAL----------HEKIL-QGLI-MDVLRVLSSPDLD-VR 334 (948)
T ss_pred ---------------------------chhhhhHHHHHHHhhh----------hHHHH-HHHH-HHHHHHcCccccc-HH
Confidence 0000001111111100 00000 1011 1112344455444 55
Q ss_pred HHHHHHHHHhhcCc---hh----HHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHH
Q 000124 409 ERVLEAMASLYGNI---FL----SQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS 481 (2138)
Q Consensus 409 ~~Aa~AL~~L~~n~---~~----~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~ 481 (2138)
..+......|...- ++ ++.+.+.... =...+...++..+.++...+.+-++.. ...|+.|++
T Consensus 335 ~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~------e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~ 403 (948)
T KOG1058|consen 335 SKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE------ESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLD 403 (948)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc------ccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHH
Confidence 55544433332111 11 1111110000 001123345666677777666655543 345789999
Q ss_pred HhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhh-CCHHHHHHHHHHHHHHhcCChhHHHHH----HH
Q 000124 482 LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACV----ES 556 (2138)
Q Consensus 482 LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks-~d~~vre~Aa~aL~nLs~~sd~~r~~I----~e 556 (2138)
.+.+.|+..-...+..+...-...+.-|..+ +..|++-+.. .+.++-+.++|+++.-+....+.+..+ ..
T Consensus 404 fisD~N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~s 478 (948)
T KOG1058|consen 404 FISDSNEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQS 478 (948)
T ss_pred HhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9988887665555555554444334444333 4444444432 366777888888888876555444421 22
Q ss_pred cCCcchhh
Q 000124 557 AGAVPAFL 564 (2138)
Q Consensus 557 ~GaI~aLv 564 (2138)
-|-+|.+.
T Consensus 479 lGEvp~~~ 486 (948)
T KOG1058|consen 479 LGEVPIVC 486 (948)
T ss_pred ccccceeh
Confidence 46666553
No 274
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.81 E-value=0.49 Score=48.90 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHH--hcCcHHHHHHH
Q 000124 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVL--LEDVVSALTRV 773 (2138)
Q Consensus 696 k~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii--~~g~L~~LV~L 773 (2138)
|..+..+|+.++.+.+. . ..-.-..++++++..+.+.+..||..|+++|.|++.. .+..+. -......|.++
T Consensus 3 R~ggli~Laa~ai~l~~--~--~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~--~~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGK--D--ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV--ARGEILPYFNEIFDALCKL 76 (97)
T ss_pred hhHHHHHHHHHHHHchH--h--HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 44556666666553332 1 2223345899999999999999999999999999742 223332 34577888889
Q ss_pred HhCCCHHHHHHHHHHHHHhhh
Q 000124 774 LAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 774 L~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
+.+.++.||..| +.|-++..
T Consensus 77 ~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 77 SADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HcCCchhHHHHH-HHHHHHhc
Confidence 999999988776 66666543
No 275
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=91 Score=44.58 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=137.6
Q ss_pred ccCChhHHHHHHHHHHHHHHhhc-----hhhH----HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccch
Q 000124 568 KSGGPKGQDASAMALTKLIRAAD-----SATI----NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKG 638 (2138)
Q Consensus 568 kS~~~evq~~Aa~AL~nLs~~~e-----~~aI----~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~Ga 638 (2138)
++.++.+|..+-..|..++..+. ..-+ +.|..-+++.+...+...+.||..+....+ .+...-. ...
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~~~i---~k~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHCDLI---PKL 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHHHHH---HHH
Confidence 44578899999999999987632 1122 333444444455566667778877765433 1211110 113
Q ss_pred hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC------CCHHHHHHHhccC--CHHHHHHH--HHHHHHhcC
Q 000124 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD------EIVNPCMRLLTSN--TQMVATQS--ARALGALSR 708 (2138)
Q Consensus 639 I~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~------GaV~~Lv~LL~dg--s~~Vk~~A--A~ALanLa~ 708 (2138)
|+-++-.++..+...|+.|...|..|+. .....+. ..+..++..+..| .+..+..| .-++..+..
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 4445555577789999999999999883 1111122 2667777777665 33333333 344555443
Q ss_pred CCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHH
Q 000124 709 PTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASR 787 (2138)
Q Consensus 709 s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~ 787 (2138)
... +.-....-.+.+..+...|.+.+.+++..|+..+..+.. .|+..-.--.+..++.+..+.++..-.+|.+.-.
T Consensus 815 e~~---~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 815 EFK---NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred HHh---ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 110 111111223455556666788999999999999999876 6776555555668899999999999999999999
Q ss_pred HHHHhhhcCC
Q 000124 788 ALHQLLKHFP 797 (2138)
Q Consensus 788 AL~nL~~~~~ 797 (2138)
.+-.|+..+.
T Consensus 892 LlekLirkfg 901 (1176)
T KOG1248|consen 892 LLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHhC
Confidence 9999998754
No 276
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.17 E-value=0.07 Score=64.44 Aligned_cols=88 Identities=19% Similarity=0.376 Sum_probs=69.1
Q ss_pred EEEEEeccccc--ccccCCCCceEEEEecCCCCc----cccccccCCCCCcccc--ceeeecCCCCCCeEEEEEeecCCC
Q 000124 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPR----QTKVVSHSISPEWKEG--FTWAFDVPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2012 l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~t~~~~~~~~p~w~~~--f~~~~~~~p~~~~l~~~~~~~~~~ 2083 (2138)
+-+|+.+|++| .+..|-.|||+++.+..|-.| +||+...++||.|+|+ +.|+.+++-....+.+.|-+++.|
T Consensus 95 ~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~ 174 (362)
T KOG1013|consen 95 LDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKK 174 (362)
T ss_pred cceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCccc
Confidence 45689999998 788899999999999999988 4789999999999987 556777774444567777788777
Q ss_pred -CCcccceEEEEeccee
Q 000124 2084 -GKSTLGKVTIQIDKVV 2099 (2138)
Q Consensus 2084 -~k~~~g~~~~~~~~v~ 2099 (2138)
..++.|.-.+++-|.=
T Consensus 175 ~~~~sqGq~r~~lkKl~ 191 (362)
T KOG1013|consen 175 THNESQGQSRVSLKKLK 191 (362)
T ss_pred ccccCcccchhhhhccC
Confidence 4577777665555543
No 277
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=90.82 E-value=2.1 Score=48.02 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=96.0
Q ss_pred HhhhchhHHHHHHHhcCCch------hhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC--CHHHHHHHHHHH
Q 000124 469 AIGKREGIQLLISLLGLSSE------QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVL 540 (2138)
Q Consensus 469 ~I~e~ggIp~LV~LL~s~d~------~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL 540 (2138)
..+..+|+..|+++++++.. .+...++.++..|-.| ....|.......+...+...... +..+...|...|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45578999999999988763 5777888999998885 34456666777888888888755 688999999999
Q ss_pred HHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHH
Q 000124 541 WILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLI 586 (2138)
Q Consensus 541 ~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs 586 (2138)
-++..++......+.++=.++.|+..++.+++++|.++...+-.|.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999988887888888888999999999999999998887665554
No 278
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=90.43 E-value=0.46 Score=61.52 Aligned_cols=79 Identities=16% Similarity=0.352 Sum_probs=59.3
Q ss_pred ccccCCCCceEEEEecCCCCc-----cccccccCCCCCccccceeeecC---CCCCCeEEEEEeecCCCCC-cccceEEE
Q 000124 2023 KQTMGTTNAFCRLTIGNGPPR-----QTKVVSHSISPEWKEGFTWAFDV---PPKGQKLHIICKSKNTFGK-STLGKVTI 2093 (2138)
Q Consensus 2023 ~~~~~~~~~~~~~~~~~~~~~-----~t~~~~~~~~p~w~~~f~~~~~~---~p~~~~l~~~~~~~~~~~k-~~~g~~~~ 2093 (2138)
++..++.|||-...-..|+.+ +|.|++++++|+|.... -.+.. +--+-.+.|+|++.++.|| +.+|++.-
T Consensus 151 kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~-i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~t 229 (529)
T KOG1327|consen 151 KDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS-ISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQT 229 (529)
T ss_pred ccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc-cchhhhcccCCCCceEEEEeccCCCCCcCceeEecc
Confidence 667789999999988655555 59999999999998632 11111 1012456799999999999 99999998
Q ss_pred Eecceeecc
Q 000124 2094 QIDKVVTEG 2102 (2138)
Q Consensus 2094 ~~~~v~~~~ 2102 (2138)
++.++-..|
T Consensus 230 t~~~~~~~~ 238 (529)
T KOG1327|consen 230 TLSELQEPG 238 (529)
T ss_pred cHHHhcccC
Confidence 888775433
No 279
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.73 E-value=3.2 Score=50.14 Aligned_cols=98 Identities=21% Similarity=0.200 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHh-cCCHHHHHHHHHHH-HHhccCchhHHHHHhcCChHHHHHh
Q 000124 56 QERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR-SGTPLAKVNVAATL-SVLCKDEDLRLKVLLGGCIPPLLSL 133 (2138)
Q Consensus 56 ~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLk-s~~~evr~~Aa~~L-~~Ls~~e~~r~~v~~~G~Ip~Lv~L 133 (2138)
.....|++.|.-+|.-++..|..+.+ ..++..++.+|. ...+.++..++.+| +.|..++.+...+-..+|+..++++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34566889999999999999999998 789999999994 46788999999999 5566788899999999999999999
Q ss_pred hccC--CHHHHHHHHHHHHHhhc
Q 000124 134 LKSE--STDTRKAAAEALYEVSS 154 (2138)
Q Consensus 134 L~se--d~eVr~aAa~AL~nLS~ 154 (2138)
+++. +.++|-++...|+-...
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHc
Confidence 9983 88899999999877665
No 280
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.78 E-value=0.66 Score=56.45 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=73.6
Q ss_pred CCchhhhhhhhhhcCC----ceEEEEEeccccc--ccccCCCCceEEEEecCCC----CccccccccCCCCCccccceee
Q 000124 1994 PPSFHERADSLLHCLP----GCLTVTIKRGNNL--KQTMGTTNAFCRLTIGNGP----PRQTKVVSHSISPEWKEGFTWA 2063 (2138)
Q Consensus 1994 ~~~~~~~~~~~~~~~~----g~l~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~p~w~~~f~~~ 2063 (2138)
-+.|-||...+.+--| +-|-||++|--+| -+++|-.||||...+.-+- +|||++-|++++|+.|++|-|.
T Consensus 213 ~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~ 292 (362)
T KOG1013|consen 213 RDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYD 292 (362)
T ss_pred ccchhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccccccccc
Confidence 3557777777765432 3467888997777 8899999999998875433 3469999999999999999886
Q ss_pred ecCCC-CCCeEEEEEeecCCC-CCcccceEE
Q 000124 2064 FDVPP-KGQKLHIICKSKNTF-GKSTLGKVT 2092 (2138)
Q Consensus 2064 ~~~~p-~~~~l~~~~~~~~~~-~k~~~g~~~ 2092 (2138)
..-.- .+-|+-|.||+.+.. +.++.|-+-
T Consensus 293 i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~ 323 (362)
T KOG1013|consen 293 IGPGDLAYKKVALSVGDYDIGKSNDSIGGSM 323 (362)
T ss_pred CCccchhcceEEEeecccCCCcCccCCCccc
Confidence 54211 356899999999877 667776543
No 281
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=88.51 E-value=2.5 Score=47.40 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=80.6
Q ss_pred hHHHHHHHHcCCCChhHHHHHHHHHHHHhh-cCchhHHHHhhh-chHHHHHHHHc--cCCHHHHHHHHHHHHHhhhccch
Q 000124 390 QIEDILVMLLKPHDNKLVQERVLEAMASLY-GNIFLSQWVSHA-EAKKVLIGLIT--MATADVREYLILSLTKLCRREVG 465 (2138)
Q Consensus 390 ~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~-~n~~~~~~L~e~-~gI~~LV~LL~--sss~evq~~Aa~aL~~Ls~~s~~ 465 (2138)
.+.+++..++...+.+ -...+..++..++ ..+++...+... +.++.++.+.. ..+...+..++++|..-|.+ ..
T Consensus 43 ~~~~~i~~~~~~~~~d-~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~ 120 (157)
T PF11701_consen 43 KISDFIESLLDEGEMD-SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KS 120 (157)
T ss_dssp HHHHHHHHHHCCHHCC-HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHccccch-hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HH
Confidence 4456666676665444 5677888888885 456777776655 56888999998 78899999999999988877 34
Q ss_pred hhHHhhhchhHHHHHHHhc-CCchh-hHHHHHHHHHHH
Q 000124 466 IWEAIGKREGIQLLISLLG-LSSEQ-HQEYAVQLIAIL 501 (2138)
Q Consensus 466 ~~~~I~e~ggIp~LV~LL~-s~d~~-Vr~~Aa~aL~nL 501 (2138)
.+..| ...+++.|.++++ ++++. +|..|+.+|++|
T Consensus 121 ~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 121 CRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 44444 5788999999995 55666 899999998864
No 282
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=88.31 E-value=8.7 Score=43.92 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhH
Q 000124 650 NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPL 729 (2138)
Q Consensus 650 s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~L 729 (2138)
++.+|.+++.+++.|+...+... +..++.+...|+|.++.+|..|..+|.+|...... .. +...+..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i--k~-----k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI--KV-----KGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce--ee-----hhhhhHHH
Confidence 47889999999999987544333 23467888999999999999999999999862221 11 12234778
Q ss_pred HhhhhcCCHHHHHHHHHHHHHhhCC
Q 000124 730 IKLAKTSSIDAAETAVAALANLLSD 754 (2138)
Q Consensus 730 v~LL~s~s~~Vr~eAl~ALaNLa~~ 754 (2138)
+.++.+++++++..|...+..+...
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999988764
No 283
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=88.27 E-value=17 Score=41.57 Aligned_cols=89 Identities=18% Similarity=0.298 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh----chhhHHHHHHHhcCC
Q 000124 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA----DSATINQLLALLLGD 604 (2138)
Q Consensus 529 d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~----e~~aI~~Li~LL~~~ 604 (2138)
++.+|.++..+++.|+...+.. . ...++.+...++++++.+|+.|..+|.+|.... +...+..+..++.|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC
Confidence 4788999999999998733221 1 335778889999999999999999999998653 223347888899999
Q ss_pred CcchHHHHHHHHHHHHhh
Q 000124 605 SPSSKAHVIKVLGHVLTM 622 (2138)
Q Consensus 605 d~~V~~~A~~AL~~La~~ 622 (2138)
+++|+..|..++..+...
T Consensus 76 ~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999998888877644
No 284
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=88.07 E-value=1.1 Score=56.01 Aligned_cols=103 Identities=20% Similarity=0.367 Sum_probs=85.5
Q ss_pred eEEEEEecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCe------EEEEEeecC--C
Q 000124 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQK------LHIICKSKN--T 2082 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~------l~~~~~~~~--~ 2082 (2138)
+++|.|++|-|..+. -+..=++.=+| +|+.=.|-.|-++-.|.||.+--|-+|-.-++++ +-++|..-+ +
T Consensus 1 ~ivl~i~egr~F~~~-~~~~~vv~a~~-ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 1 LIVLSILEGRNFPQR-PRHPIVVEAKF-NGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred CEEEEEecccCCCCC-CCccEEEEEEe-CCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 478999999999666 44455667788 9999899999999999999999999998877766 778888875 7
Q ss_pred CCCcccceEEEEecceee--cc---eecceeecCCCCC
Q 000124 2083 FGKSTLGKVTIQIDKVVT--EG---VYSGLFNLNHDNN 2115 (2138)
Q Consensus 2083 ~~k~~~g~~~~~~~~v~~--~~---~~~~~~~l~~~~~ 2115 (2138)
..||++|||-+.|.-+|. +| .=..+|.|.+.+|
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~ 116 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS 116 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEcccccc
Confidence 799999999999998821 33 5567999999944
No 285
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.95 E-value=0.47 Score=58.50 Aligned_cols=108 Identities=22% Similarity=0.320 Sum_probs=86.1
Q ss_pred CceEEEEEecccccccccC---CCCceEEEEec-CC--C-CccccccccCCCCCccccceeeecCCCCCCeEEEEEeecC
Q 000124 2009 PGCLTVTIKRGNNLKQTMG---TTNAFCRLTIG-NG--P-PRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKN 2081 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~~~~---~~~~~~~~~~~-~~--~-~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~ 2081 (2138)
-|.|.|-|++|.+|..|-| -..|||++.+= +| - ++|||.-+|+.+|-+.|.- .|+++|.+--|-+.||+.=
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l--~f~~sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQL--SFDQSPPGKYLQGTVWGDY 345 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhh--hhccCCCccEEEEEEeccc
Confidence 4889999999999944323 67999999862 22 2 3469999999988777654 5689999999999999973
Q ss_pred CC--CCcccceEEEEecceeecc-eecceeecCCCCCCCC
Q 000124 2082 TF--GKSTLGKVTIQIDKVVTEG-VYSGLFNLNHDNNKDS 2118 (2138)
Q Consensus 2082 ~~--~k~~~g~~~~~~~~v~~~~-~~~~~~~l~~~~~~~~ 2118 (2138)
-. .|+.||-.-|.+++.=.-- -..++|.|-+++++.+
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl~~ 385 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSLVP 385 (405)
T ss_pred cccchHHHhhHHHHHhhhhccccccceeeeeccCCccCCC
Confidence 22 8999999999888875543 6789999999988887
No 286
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=87.34 E-value=8.7 Score=43.31 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=94.5
Q ss_pred HHHhhhchHHHHHHHHccCC------HHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCC--chhhHHHHHHH
Q 000124 426 QWVSHAEAKKVLIGLITMAT------ADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS--SEQHQEYAVQL 497 (2138)
Q Consensus 426 ~~L~e~~gI~~LV~LL~sss------~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~--d~~Vr~~Aa~a 497 (2138)
.++...+|+..|+.++..+. .+...++..++..|-.++ -..+.......|..++...+.. +..+.+.++..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45677899999999998866 366777778888887774 3344555677778888877644 57899999999
Q ss_pred HHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcC
Q 000124 498 IAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH 546 (2138)
Q Consensus 498 L~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~ 546 (2138)
|-++...++.....+.++=-++.|+..|+..+++++..+...+-.|-..
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 9999986666667777777889999999999999999998888777554
No 287
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.14 E-value=4.7 Score=45.31 Aligned_cols=135 Identities=16% Similarity=0.103 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhh-hchhHHHHHHH
Q 000124 404 NKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG-KREGIQLLISL 482 (2138)
Q Consensus 404 ~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~-e~ggIp~LV~L 482 (2138)
++.+|..+..++..+. +..+.-.....-+++-.++..++.+....+..++..+--..++....+. ..|.++.+..+
T Consensus 18 ~~~~r~~a~v~l~k~l---~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 18 PEEVRSHALVILSKLL---DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp SCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 3448999999988884 2222222333455666677766666788888888888777777777666 44557788888
Q ss_pred hc--CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-CHH-HHHHHHHHHHHH
Q 000124 483 LG--LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQK-AREVAAHVLWIL 543 (2138)
Q Consensus 483 L~--s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-d~~-vre~Aa~aL~nL 543 (2138)
+. +.+..++..++.+|..-|. ++.+...+...+++-|.++++.+ ++. +|..|+-+|+.|
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 88 7888899999999877665 45555555566889999999654 555 788888777653
No 288
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.94 E-value=12 Score=46.42 Aligned_cols=169 Identities=20% Similarity=0.209 Sum_probs=106.9
Q ss_pred hHHHHH-HHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCCh--hHH
Q 000124 475 GIQLLI-SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE--DIR 551 (2138)
Q Consensus 475 gIp~LV-~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd--~~r 551 (2138)
.+..|+ ..+++.+..+|+.|+.+|+-.+..+.+. ....++.+...++.++..++..|..++..+..... ...
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~-----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL-----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344444 6778899999999999999988754422 22356777888877899999999999998854211 111
Q ss_pred HH------HHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh---c-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHh
Q 000124 552 AC------VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA---D-SATINQLLALLLGDSPSSKAHVIKVLGHVLT 621 (2138)
Q Consensus 552 ~~------I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~---e-~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~ 621 (2138)
.. ......+..+.+.+.+.+++++..++..+..|.-.. + ...+..|+-+.-+....-......+|+.+..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 11 111234455667888889999999999999987653 3 4555655555444333333456778887765
Q ss_pred h-hcchHHHHhhhcccchhhHHHHhhcCC
Q 000124 622 M-ALQEDLVQKGSAANKGLRSLVQVLNSS 649 (2138)
Q Consensus 622 ~-~~~~d~v~~~l~~~GaI~aLV~LLks~ 649 (2138)
. .......+. .....+++.+-.+.+..
T Consensus 182 ~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 182 VYASSSPENQE-RLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHHHhCc
Confidence 4 212111222 23344667666666543
No 289
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=86.92 E-value=23 Score=49.25 Aligned_cols=183 Identities=15% Similarity=0.087 Sum_probs=112.6
Q ss_pred cCcHHHHHHHHhcC-----CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc----CC----HHHHHHHHHHH
Q 000124 83 AQAMPLFISILRSG-----TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS----ES----TDTRKAAAEAL 149 (2138)
Q Consensus 83 aGgVp~LV~LLks~-----~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s----ed----~eVr~aAa~AL 149 (2138)
.||+..++.++.+- ..+.....+.+|...++-..+|+.+...++++.|++.|.. +. .++-+.-..++
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 79999999999763 3456667788888888999999999999999999988853 23 56667777777
Q ss_pred HHhhcCCCCCChhhHHHHHHcC--------cHHHHHHhhCCCC-CCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHH
Q 000124 150 YEVSSGGLSDDHVGMKIFVTEG--------VVPTLWDQLNPKN-KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220 (2138)
Q Consensus 150 ~nLS~~~~nkd~~gre~IveaG--------~Ip~Ll~LL~s~s-~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~ 220 (2138)
..|.......+..+........ -+..|++.+.++. ...+.+....+++|-.|+.+++.....+++.= ..
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F--~p 273 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF--KP 273 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH--HH
Confidence 6665421100000001111122 3778888887542 23467888999999999998877644443311 11
Q ss_pred HHHhhcc---CCHHHHHHHHHHHHHHHhhcC------CCcchhhccchHHHHHHHhc
Q 000124 221 IVGLLSS---DNAAAQSNAASLLARLMLAFG------DSIPTVIDSGAVKALVQLVG 268 (2138)
Q Consensus 221 Lv~lL~s---~s~evq~~A~~aL~nLs~~~~------e~r~~l~~~GaL~~LL~LL~ 268 (2138)
.+++=.- ..++- ...+..++.++..-+ ..+..+.+.|.+...+..+.
T Consensus 274 ~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~ 329 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLL 329 (802)
T ss_pred hcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHH
Confidence 1111000 11111 233666777774322 23344667788877776664
No 290
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=86.65 E-value=28 Score=44.93 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc-HHHHHHHhhhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHhccCch
Q 000124 39 STVAKFLEQLHANMSSPQERELITMRILTIAKAK-KEARLLIGSHAQAMPLFISILRS-GTPLAKVNVAATLSVLCKDED 116 (2138)
Q Consensus 39 ~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~-d~ak~lI~~~aGgVp~LV~LLks-~~~evr~~Aa~~L~~Ls~~e~ 116 (2138)
..|.+++..+++. ...+++..|+..|..+..+. ..-+..-+. ..+..+++.|.+ .++-.+..|+++|..++.+..
T Consensus 286 ~~v~~~l~~~~g~-e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 286 ALVADLLKEISGS-ERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred HHHHHHHHhccCc-cchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 5677777777655 44567888888888775544 333332222 356778899987 678889999999999987644
Q ss_pred hHHHHHhcCChHHHHHhhccCCHHHHHHHH-HHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHH
Q 000124 117 LRLKVLLGGCIPPLLSLLKSESTDTRKAAA-EALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVT 195 (2138)
Q Consensus 117 ~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa-~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al 195 (2138)
.+..=--.-+|..++..-.+.+.++...|. .++..++++ ++.. .|..+..++.... + .....++
T Consensus 363 ~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~----~P~~--------~I~~i~~~Ilt~D--~-~~~~~~i 427 (516)
T KOG2956|consen 363 ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH----LPLQ--------CIVNISPLILTAD--E-PRAVAVI 427 (516)
T ss_pred HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh----Cchh--------HHHHHhhHHhcCc--c-hHHHHHH
Confidence 332221123455666665564444444444 456666653 2221 1222222332211 2 2344556
Q ss_pred HHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000124 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 196 ~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs 244 (2138)
..+-.++..-..-.-.-.-..-.|.+++.-.+.+..+|..++.+|-.+.
T Consensus 428 Km~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 428 KMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 6666776653221111122335788888888888999999999888777
No 291
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.55 E-value=14 Score=48.17 Aligned_cols=134 Identities=18% Similarity=0.238 Sum_probs=92.1
Q ss_pred ccchhhHHHHh-hcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCc
Q 000124 635 ANKGLRSLVQV-LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 635 ~~GaI~aLV~L-Lks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d-gs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
..|.+..|.+. .+++++++|..|+.+|.-+|..+ ...+...+++|.+ .+..+|...+.+|+-.+.+.
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~-- 617 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGT-- 617 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC--
Confidence 45678888887 67789999999999999998743 3455556677755 58899999999998776522
Q ss_pred ccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
+.+. ++..|-.|..+.++-||+.|+-+++.+.. +|+...... +.+..+.+++.+.++..-.+--.+|
T Consensus 618 --G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~--~I~k~f~~vI~~Khe~glaklGA~l 686 (926)
T COG5116 618 --GDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVK--RIIKKFNRVIVDKHESGLAKLGAVL 686 (926)
T ss_pred --ccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHH--HHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 1121 45556667788889999999999988764 444333222 3556677777776665443333333
No 292
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.04 E-value=2.1e+02 Score=42.19 Aligned_cols=544 Identities=15% Similarity=0.118 Sum_probs=244.7
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchh---HHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCC
Q 000124 84 QAMPLFISILRSGTPLAKVNVAATLSVLCKDEDL---RLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDD 160 (2138)
Q Consensus 84 GgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~---r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd 160 (2138)
+.+..++..|..+...+|..|+++|..+..-+.. +..+. ..+-+=+.+.+..||++|...++..-.. .
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq-----~~Vh~R~~DssasVREAaldLvGrfvl~----~ 886 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQ-----EAVHGRLNDSSASVREAALDLVGRFVLS----I 886 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHH-----HHHHHhhccchhHHHHHHHHHHhhhhhc----c
Confidence 4567778888888899999999999988643321 11111 1222334456889999999999854431 1
Q ss_pred hhhHHHHHHcCcHHHHHHhhCCC-CCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhcc---CCHHHHHHH
Q 000124 161 HVGMKIFVTEGVVPTLWDQLNPK-NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSS---DNAAAQSNA 236 (2138)
Q Consensus 161 ~~gre~IveaG~Ip~Ll~LL~s~-s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s---~s~evq~~A 236 (2138)
+. .++...+.+.+. ...+-.|+..+++.++.+|...+..-. -++...++|.. +...++.-+
T Consensus 887 ~e---------~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv 951 (1692)
T KOG1020|consen 887 PE---------LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLV 951 (1692)
T ss_pred HH---------HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHH
Confidence 11 233333333211 113456999999999999998765421 12333444443 334489999
Q ss_pred HHHHHHHHhhcCCC--cchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhh-----cCHHHHHHHHh---cCCHHHH
Q 000124 237 ASLLARLMLAFGDS--IPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSS-----KSIKAKKAVVA---ADGVPVL 306 (2138)
Q Consensus 237 ~~aL~nLs~~~~e~--r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~-----~s~e~Rk~i~e---~ggL~~L 306 (2138)
+.++.++=...+.. .+.-.. .-+...+....+.-+ -...+--..+..+.. ......+.+.. ...+..+
T Consensus 952 ~etf~klWF~p~~~~~d~~~~~-~kI~~~~~vv~~~~d-~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~ 1029 (1692)
T KOG1020|consen 952 RETFLKLWFTPVPEVNDQPAKA-RKISLEVDVVMSQVD-LMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLL 1029 (1692)
T ss_pred HHHHHHHhccCCCcccccHHHH-HhhHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHH
Confidence 99988876322211 111110 011111111110000 000000011111111 00111111111 1122222
Q ss_pred HHhhcCCchh----hhhhhhhhhhHHHHHHHHHHhhcCchhH-----HHHhhhhcCCCCchhhHHHHHHHHHHHH-HHhh
Q 000124 307 IGAIVAPSKE----CMQGQRGQALQGHATRALANIYGGMPAL-----VVYLGELSQSPRLAAPVADIIGALAYAL-MVFE 376 (2138)
Q Consensus 307 I~LL~s~s~e----~mq~~~~~alqe~Al~ALanIsGgis~L-----I~~L~elL~~~~ss~~~A~~L~aLa~~l-~~l~ 376 (2138)
.+.+.....+ .+.....++-....+-.|.-.+...+.+ +..|...|.....+...+.++..+.... .+++
T Consensus 1030 ~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlP 1109 (1692)
T KOG1020|consen 1030 THCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLP 1109 (1692)
T ss_pred HHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhh
Confidence 2222211100 0111111111122223333333222221 2234444554434444555554444332 1221
Q ss_pred cCCCCCCcccchhhHHHHHHHHcCCCChhHHHHHHHHHHHHhhcCc-hhHHHHhhhchHHHHHH---HHccC--------
Q 000124 377 QKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI-FLSQWVSHAEAKKVLIG---LITMA-------- 444 (2138)
Q Consensus 377 q~~~~~~~~~~~~~Ie~~LV~LL~s~~~e~vr~~Aa~AL~~L~~n~-~~~~~L~e~~gI~~LV~---LL~ss-------- 444 (2138)
--+ ...+.|- ..++..|..++-..+.. .-.+|.-+++.++..- ...+.+. .+...... .+++.
T Consensus 1110 lv~-~~sesfL-~sLEe~L~~~i~k~g~a-~V~~~vsCl~sl~~k~~~~~~~v~--~cf~~~~k~le~~k~s~~en~~~~ 1184 (1692)
T KOG1020|consen 1110 LVA-NPSESFL-ASLEEDLLKRIVKMGMA-TVVEAVSCLGSLATKRTDGAKVVK--ACFSCYLKLLEVIKSSNNENADIV 1184 (1692)
T ss_pred hhc-cchHHHH-HHHHHHHHHHHHhcchH-HHHHHHHHHHHHHhhhccchHHHH--HHHHHHHHHHHHHHhccccccchh
Confidence 001 1112222 25666666555443333 3467777888887531 1111111 11222222 22222
Q ss_pred CHHHHHHHHHHHHHhhhcc----chh-hH------HhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHH
Q 000124 445 TADVREYLILSLTKLCRRE----VGI-WE------AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513 (2138)
Q Consensus 445 s~evq~~Aa~aL~~Ls~~s----~~~-~~------~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~ 513 (2138)
........+.+++-+++.- +.. +. .-...+.+..|..+.+..+..+|..|+..|+.+|..++.. +.
T Consensus 1185 ~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l---~~ 1261 (1692)
T KOG1020|consen 1185 NFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSL---FT 1261 (1692)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchh---hh
Confidence 1133445556666666521 110 00 1123455666777778888999999999999998754443 11
Q ss_pred hcCCchHHHHHhhhCC--HHHHHHHHHHHHHHhcCChhHHHHHHHcCC-------cchhhhccccCChhHHHHHHHHHHH
Q 000124 514 AAGGIPPLVQLLEAGS--QKAREVAAHVLWILCCHSEDIRACVESAGA-------VPAFLWLLKSGGPKGQDASAMALTK 584 (2138)
Q Consensus 514 ~aGaIp~LV~LLks~d--~~vre~Aa~aL~nLs~~sd~~r~~I~e~Ga-------I~aLv~LLkS~~~evq~~Aa~AL~n 584 (2138)
+......+-..|.+.. ...+..+...+.-.-... +..+...|. ..-+-++....+...-...+.++..
T Consensus 1262 ~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~ee---e~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Q 1338 (1692)
T KOG1020|consen 1262 SREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEE---EKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQ 1338 (1692)
T ss_pred hHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---HHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHH
Confidence 2222233333444432 121333333332221111 111111111 0011111111111111111222222
Q ss_pred HHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccc-hhhHHHHhhcCCCHHHHHHHHHHHHH
Q 000124 585 LIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK-GLRSLVQVLNSSNEENQEYAASVLAD 663 (2138)
Q Consensus 585 Ls~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~G-aI~aLV~LLks~s~evre~Aa~ALan 663 (2138)
+. ++.+++..-+.+..++..+.+.+....+ .++..++ .++.|+.+-.+..++.|..|-..|.+
T Consensus 1339 lf-------l~~ILe~cl~~d~~~r~~aikvl~liL~---------QGLVhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~e 1402 (1692)
T KOG1020|consen 1339 LF-------LDNILESCLDRDLQVRLVAIKVLKLILN---------QGLVHPVHCVPTLIALETDPSQAIRHVADELLKE 1402 (1692)
T ss_pred HH-------HHHHHHHHhccchHHHHHHHHHHHHHHH---------ccCCCccchhhhheeecCChHHHHHHHHHHHHHH
Confidence 22 2333444445566777777777776543 2222222 48999998888899999999999999
Q ss_pred HhhcChhhhhhhhhCCC
Q 000124 664 LFSMRQDICGSLATDEI 680 (2138)
Q Consensus 664 L~s~~~e~r~~Ive~Ga 680 (2138)
|-...+.....-...|+
T Consensus 1403 id~kY~gfv~sk~~~G~ 1419 (1692)
T KOG1020|consen 1403 IDEKYEGFVFSKLSQGV 1419 (1692)
T ss_pred HHHhhHHHHHHHHHhhh
Confidence 97655554444444443
No 293
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=85.91 E-value=28 Score=44.74 Aligned_cols=123 Identities=18% Similarity=0.246 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHhcH---HHHHHHhhhcCcHHHHHHHHhcC-------CHHHHHHHHHHHHHhccCchhHHHHHhcC
Q 000124 56 QERELITMRILTIAKAKK---EARLLIGSHAQAMPLFISILRSG-------TPLAKVNVAATLSVLCKDEDLRLKVLLGG 125 (2138)
Q Consensus 56 ~ere~AL~~L~~L~~~~d---~ak~lI~~~aGgVp~LV~LLks~-------~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G 125 (2138)
.+|-.|+-..-++++++| .+|+.+++ +=|.+-+-++|+++ +.-.+.-+..+|.-+|.+++....---..
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~ 104 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVS 104 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHH
Confidence 557888877778887765 46788888 78899999999874 23456678888888998877543333337
Q ss_pred ChHHHHHhhcc-CCHH------HHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCC
Q 000124 126 CIPPLLSLLKS-ESTD------TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN 184 (2138)
Q Consensus 126 ~Ip~Lv~LL~s-ed~e------Vr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s 184 (2138)
.||.|..++.. .|++ +.+.+-..|..++. .+.|...++..|+++.+-++-..++
T Consensus 105 ~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-----~e~G~~~Lia~G~~~~~~Q~y~~~~ 165 (698)
T KOG2611|consen 105 RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-----AEAGLMTLIASGGLRVIAQMYELPD 165 (698)
T ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-----CCchhHHHHhcCchHHHHHHHhCCC
Confidence 78999999976 3444 77889999999996 4668899999999999997665443
No 294
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=85.83 E-value=37 Score=42.92 Aligned_cols=203 Identities=11% Similarity=0.073 Sum_probs=134.9
Q ss_pred HHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhH-----Hh-hh-chhHHHHHHHhcCCchhhHHHHHHHHH
Q 000124 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWE-----AI-GK-REGIQLLISLLGLSSEQHQEYAVQLIA 499 (2138)
Q Consensus 427 ~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~-----~I-~e-~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2138)
.+...+.+..|+..+..-+-+.++.++..+.++-....+.+. -+ .. ...+..|+..++ ++++-..+...|+
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlR 148 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHH
Confidence 445557778888888888889999999888888775433322 22 22 344555555554 4556666777778
Q ss_pred HHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHH-hcCChhHHHHHHH--cCCcchhhhccccCChhHHH
Q 000124 500 ILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL-CCHSEDIRACVES--AGAVPAFLWLLKSGGPKGQD 576 (2138)
Q Consensus 500 nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nL-s~~sd~~r~~I~e--~GaI~aLv~LLkS~~~evq~ 576 (2138)
.+..+ +.....+.....+..+.+..+.++-++-..|..++..+ +.|.....+.+.. .........++.+++--+++
T Consensus 149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 77774 44444555677788888888889999999999888885 4443333444332 12334556789999999999
Q ss_pred HHHHHHHHHHHhh-----------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000124 577 ASAMALTKLIRAA-----------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2138)
Q Consensus 577 ~Aa~AL~nLs~~~-----------e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~ 632 (2138)
++...|+.+..+. +..-+..++.||++.+..++..|-+..-........+..+...
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~i 294 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDI 294 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHH
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHH
Confidence 9999999998663 2345678999999999999999988888776554444444443
No 295
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.35 E-value=94 Score=37.50 Aligned_cols=194 Identities=15% Similarity=0.128 Sum_probs=114.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHh------------cCCHHHHHHHHHHH
Q 000124 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR------------SGTPLAKVNVAATL 108 (2138)
Q Consensus 41 V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLk------------s~~~evr~~Aa~~L 108 (2138)
+-+.+-.+. ++..+|.|+..|.+--+..++.-.++-..-|.+..+++-.- ...+--..+++.+|
T Consensus 28 ~~~~i~~l~----~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~Ll 103 (293)
T KOG3036|consen 28 AYQLILSLV----SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALL 103 (293)
T ss_pred hhhHHHHhh----CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHH
Confidence 444554452 33457877777665544332322222221333333332221 11334566788888
Q ss_pred HHhccCchhHHHHHhcCChHHHHHhhcc-----CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCC
Q 000124 109 SVLCKDEDLRLKVLLGGCIPPLLSLLKS-----ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183 (2138)
Q Consensus 109 ~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-----ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~ 183 (2138)
..++++++.|..+..+..---+-.+|.. ..+..|..+++.+..|...+ +..--..+...++||..++.+..+
T Consensus 104 QcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~d---d~eVi~fLl~TeIVPlCLrime~G 180 (293)
T KOG3036|consen 104 QCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKND---DQEVIRFLLTTEIVPLCLRIMESG 180 (293)
T ss_pred HHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcC---cHHHHHHHHHhhhHHHHHHHHhcc
Confidence 9999999999999988664455566643 36778999999999999864 344456778889999999999988
Q ss_pred CCCChhHHHHHHHHHHHHhcCCCchh------HHHHH-hCcHHHHHH-hhccCCHHHHHHHHHHHHHHH
Q 000124 184 NKQDNVVQGFVTGALRNLCGDKDGYW------RATLE-AGGVDIIVG-LLSSDNAAAQSNAASLLARLM 244 (2138)
Q Consensus 184 s~ed~~V~e~Al~aL~nLcs~~e~r~------~aI~e-~GGI~~Lv~-lL~s~s~evq~~A~~aL~nLs 244 (2138)
+. .-+.-|+.++..+-.++.|-. ..+.. .-.+..++. +.+.++...-.+++++..+|+
T Consensus 181 Se---lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 181 SE---LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS 246 (293)
T ss_pred cH---HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 72 234556777777766665320 00000 001222222 223345566666667666666
No 296
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=84.92 E-value=1.4e+02 Score=41.59 Aligned_cols=207 Identities=17% Similarity=0.197 Sum_probs=136.2
Q ss_pred cHHHHHHHHhc-CCHHHHHHHHHHHHHhccCchhHHHHHhc---CChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCC
Q 000124 85 AMPLFISILRS-GTPLAKVNVAATLSVLCKDEDLRLKVLLG---GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDD 160 (2138)
Q Consensus 85 gVp~LV~LLks-~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~---G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd 160 (2138)
.+...+..+.. ..+-++..|+++++..|+- ++... +.+..|.++....+.++-..-+.+|...+.... +
T Consensus 491 fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~-----~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dp--e 563 (1005)
T KOG2274|consen 491 FLNATVNALTMDVPPPVKISAVRAFCGYCKV-----KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDP--E 563 (1005)
T ss_pred HHHHHHHhhccCCCCchhHHHHHHHHhccCc-----eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccCh--h
Confidence 34444555543 3556788888888777632 22221 445667777766788888888899998886421 1
Q ss_pred hhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCC----HHHHHHH
Q 000124 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN----AAAQSNA 236 (2138)
Q Consensus 161 ~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s----~evq~~A 236 (2138)
.....++.+.|..+.+....+ ++|.+...+-.++..++...... --...-.||.+++.|..+. ......+
T Consensus 564 ---f~as~~skI~P~~i~lF~k~s-~DP~V~~~~qd~f~el~q~~~~~--g~m~e~~iPslisil~~~~~~~~~~l~~~a 637 (1005)
T KOG2274|consen 564 ---FAASMESKICPLTINLFLKYS-EDPQVASLAQDLFEELLQIAANY--GPMQERLIPSLISVLQLNADKAPAGLCAIA 637 (1005)
T ss_pred ---hhhhhhcchhHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHcCcccccCchhhHHH
Confidence 234456668888888776655 67788888888888887633211 1112236899999998875 5677788
Q ss_pred HHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHH
Q 000124 237 ASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVP 304 (2138)
Q Consensus 237 ~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~ 304 (2138)
+.+|..+....+.-.......-+.+.+.++.-+..|..+-..+-.+|+.+.+...+.--...+.+|..
T Consensus 638 idvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 638 IDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 88888887655544444445557788888776666778888899999999885444433444444444
No 297
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=83.69 E-value=54 Score=42.24 Aligned_cols=97 Identities=12% Similarity=0.245 Sum_probs=70.0
Q ss_pred ChHHHHHhhccC---CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhC-CCCCCChhHHHHHHHHHHHH
Q 000124 126 CIPPLLSLLKSE---STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLN-PKNKQDNVVQGFVTGALRNL 201 (2138)
Q Consensus 126 ~Ip~Lv~LL~se---d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~-s~s~ed~~V~e~Al~aL~nL 201 (2138)
....|..++.+. -+.+-..|+..+..+-. .++..-..+.+.|.++.+++.+. ..-.....+....-.+|..|
T Consensus 107 L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~----nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~Ai 182 (379)
T PF06025_consen 107 LLSSLKHILENPEVFGPSVFSLAINIVSDFIH----NEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAI 182 (379)
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHh----cCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHH
Confidence 344555666652 56677788888888886 36667788999999999999998 44333345666777888899
Q ss_pred hcCCCchhHHHHHhCcHHHHHHhhcc
Q 000124 202 CGDKDGYWRATLEAGGVDIIVGLLSS 227 (2138)
Q Consensus 202 cs~~e~r~~aI~e~GGI~~Lv~lL~s 227 (2138)
|-+..+. +.+.+.+.++.+.+.+.+
T Consensus 183 cLN~~Gl-~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 183 CLNNRGL-EKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred hcCHHHH-HHHHhcChHHHHHHHhCC
Confidence 9987765 666667777777765554
No 298
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.31 E-value=2.4e+02 Score=40.64 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=110.1
Q ss_pred hhhHHHHhhcC----CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCc
Q 000124 638 GLRSLVQVLNS----SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT-SNTQMVATQSARALGALSRPTKT 712 (2138)
Q Consensus 638 aI~aLV~LLks----~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~-dgs~~Vk~~AA~ALanLa~s~~~ 712 (2138)
..+.+++.++. ++++.+..|..+|+.+..-+.+.|.. -++.|+..+. +.++.+|.++.-+++.++-..|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 35666667744 47999999999999997756665544 4677888886 78999999999999999875553
Q ss_pred ccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 000124 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2138)
Q Consensus 713 ~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL 792 (2138)
.-..+-+.|...|++.+..||..|..+|.+|..+. .|.-.|-++....++-+++++++.-|-.-...|
T Consensus 995 --------lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 --------LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred --------ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 12336677888999999999999999999997532 344568889999999999999999888666555
Q ss_pred hhc
Q 000124 793 LKH 795 (2138)
Q Consensus 793 ~~~ 795 (2138)
...
T Consensus 1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred hhc
Confidence 553
No 299
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.90 E-value=2.3e+02 Score=39.98 Aligned_cols=406 Identities=17% Similarity=0.139 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHH-Hhc-cC-chhHHHHHhcCChHHHHHh
Q 000124 57 ERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLS-VLC-KD-EDLRLKVLLGGCIPPLLSL 133 (2138)
Q Consensus 57 ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~-~Ls-~~-e~~r~~v~~~G~Ip~Lv~L 133 (2138)
.+...+..+.++-..++++-.+..+ .--+|.++.-+..-...+|...+.+|- ... -+ -..++. -.|+-+
T Consensus 483 lqaeVlnrmfkIftshpeNYricqe-lytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqEL-------lSLCvL 554 (2799)
T KOG1788|consen 483 LQAEVLNRMFKIFTSHPENYRICQE-LYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQEL-------LSLCVL 554 (2799)
T ss_pred hhhHHHHHHHHHhccChHHhhHHhh-ccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHHH-------HHHHHH
Confidence 3556678888887777666555544 667899988887766677777666662 111 00 001110 122333
Q ss_pred hccC-CHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCC------------------------------
Q 000124 134 LKSE-STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP------------------------------ 182 (2138)
Q Consensus 134 L~se-d~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s------------------------------ 182 (2138)
|..+ +......-......|.. -+...++.+.+-|.+..|...++.
T Consensus 555 LqqpIssalkhtIlsffvKLIs----fDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~~l 630 (2799)
T KOG1788|consen 555 LQQPISSALKHTILSFFVKLIS----FDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQHL 630 (2799)
T ss_pred hcchhhHHHHHHHHHHHHHHhh----HHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhhcc
Confidence 3332 22222222222222222 133344555555555555444432
Q ss_pred ---------------CCCCChhHHH------HHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHH
Q 000124 183 ---------------KNKQDNVVQG------FVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2138)
Q Consensus 183 ---------------~s~ed~~V~e------~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~ 241 (2138)
++...+ +.+ ....+|..+-.++..++..+.++.|+..++.++ -+++-|...++++.
T Consensus 631 d~~daiisspklmeSgsgklp-lfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--indehRSslLrivs 707 (2799)
T KOG1788|consen 631 DSQDAIISSPKLMESGSGKLP-LFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIVS 707 (2799)
T ss_pred ccccceeecchhhcccCCccc-hhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHHH
Confidence 110111 111 125677788888888889999999999988888 34677888888888
Q ss_pred HHHhhcCCCcchhhccchHHHHHHHhccC-------CCH----hHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhh
Q 000124 242 RLMLAFGDSIPTVIDSGAVKALVQLVGQN-------NDI----SVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAI 310 (2138)
Q Consensus 242 nLs~~~~e~r~~l~~~GaL~~LL~LL~s~-------sd~----~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL 310 (2138)
+|...++.. .+...+-.++..|+++ .+- .......++++.+-.-|-..+..+.+++|...|...+
T Consensus 708 cLitvdpkq----vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttL 783 (2799)
T KOG1788|consen 708 CLITVDPKQ----VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTL 783 (2799)
T ss_pred HHhccCccc----ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHH
Confidence 887554431 2223445555555521 111 1122334445555444567788899999999998877
Q ss_pred cC--CchhhhhhhhhhhhHHHHHHHHHHhhcCchhHHHHhhhhcCCCCc----hhhHHHHHHHHHHHHHHhhcCCCCCCc
Q 000124 311 VA--PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL----AAPVADIIGALAYALMVFEQKSGVDDE 384 (2138)
Q Consensus 311 ~s--~s~e~mq~~~~~alqe~Al~ALanIsGgis~LI~~L~elL~~~~s----s~~~A~~L~aLa~~l~~l~q~~~~~~~ 384 (2138)
.. ...+.+. .++ .....-+.++- -.++. +.-+-+..+. +...-+.+..+......+. .
T Consensus 784 htfqgftelhd-esD----lcvyiklfkil---FrlfT-lavcenasNrmklhtvITsqtftsLLresgllc-------v 847 (2799)
T KOG1788|consen 784 HTFQGFTELHD-ESD----LCVYIKLFKIL---FRLFT-LAVCENASNRMKLHTVITSQTFTSLLRESGLLC-------V 847 (2799)
T ss_pred HHhccchhcCC-chh----hhhHHHHHHHH---HHHHH-HHHhhcchhhhheeeeeeHHHHHHHHHHhccce-------e
Confidence 43 1111111 000 00000011100 00000 0000000000 1111122222211110000 0
Q ss_pred ccchhhHHHHHH----HHcCCCChhHHHHHHHHHHHHhhcCc--------------hhHHHHhhhchHHHHHHHHccCCH
Q 000124 385 PFDARQIEDILV----MLLKPHDNKLVQERVLEAMASLYGNI--------------FLSQWVSHAEAKKVLIGLITMATA 446 (2138)
Q Consensus 385 ~~~~~~Ie~~LV----~LL~s~~~e~vr~~Aa~AL~~L~~n~--------------~~~~~L~e~~gI~~LV~LL~sss~ 446 (2138)
.... .++..|. ..+.+++. ..+.+ ++..+.+.+ .....+...++++.++..+-...+
T Consensus 848 nler-~viqlllElalevlvppfL--tSEsa--AcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnyp 922 (2799)
T KOG1788|consen 848 NLER-HVIQLLLELALEVLVPPFL--TSESA--ACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYP 922 (2799)
T ss_pred cchH-HHHHHHHHHHHHhhCCchh--hhhHH--HHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhCh
Confidence 0000 1111111 22222221 22222 122222211 123456677889999998888889
Q ss_pred HHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc---CCchhhHHHHHHHHHHHh
Q 000124 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG---LSSEQHQEYAVQLIAILT 502 (2138)
Q Consensus 447 evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~---s~d~~Vr~~Aa~aL~nLa 502 (2138)
..|.+-...+..+++.++.+.......|.++.|+++.. +++.....++..++.-|+
T Consensus 923 K~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvemLg 981 (2799)
T KOG1788|consen 923 KLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLG 981 (2799)
T ss_pred HHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHh
Confidence 99999999999999988999888888899999888763 444444444444444333
No 300
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=82.78 E-value=42 Score=40.26 Aligned_cols=137 Identities=12% Similarity=0.055 Sum_probs=96.4
Q ss_pred HHhhcCchhHHHHhhhchHHHHHHHHcc-----CCHHHHHHHHHHHHHhhhccc-hhhHHhhhchhHHHHHHHhcCCchh
Q 000124 416 ASLYGNIFLSQWVSHAEAKKVLIGLITM-----ATADVREYLILSLTKLCRREV-GIWEAIGKREGIQLLISLLGLSSEQ 489 (2138)
Q Consensus 416 ~~L~~n~~~~~~L~e~~gI~~LV~LL~s-----ss~evq~~Aa~aL~~Ls~~s~-~~~~~I~e~ggIp~LV~LL~s~d~~ 489 (2138)
-.++++++.+..+......-++-..+.. ..+..+..+...++.+..+++ +.-..+...+.||..++.++.+++.
T Consensus 104 QcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSel 183 (293)
T KOG3036|consen 104 QCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSEL 183 (293)
T ss_pred HHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHH
Confidence 4457889999998888877777777654 337788888899999887543 5566777889999999999999999
Q ss_pred hHHHHHHHHHHHhhcCchh--------HHHHHhcCCchHHH-HHhhhCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000124 490 HQEYAVQLIAILTEQVDDS--------KWAITAAGGIPPLV-QLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2138)
Q Consensus 490 Vr~~Aa~aL~nLa~~s~e~--------r~~I~~aGaIp~LV-~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I 554 (2138)
-|..|..++..+-..+..- |...+. ..+..++ ++.+.+++.....+..+..+|+. +...|+.+
T Consensus 184 SKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~-~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL 255 (293)
T KOG3036|consen 184 SKTVATFILQKILLDDVGLYYICQTAERFSAVA-LVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAAL 255 (293)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 9999999998876632221 111111 1222233 34455688888888888888865 44444443
No 301
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=82.71 E-value=4.8 Score=41.76 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcHH-HHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccC
Q 000124 59 ELITMRILTIAKAKKE-ARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSE 137 (2138)
Q Consensus 59 e~AL~~L~~L~~~~d~-ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~se 137 (2138)
..++..|...+..-.. ..+.+. ..+++++..+.+++..+|..|+..|.++++.............++.|.+++.+.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~---~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLD---EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHH---HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445555555443322 223332 478999999999999999999999999986544333323347788899999988
Q ss_pred CHHHHHHHHHHHHHh
Q 000124 138 STDTRKAAAEALYEV 152 (2138)
Q Consensus 138 d~eVr~aAa~AL~nL 152 (2138)
++.||..| ..|-.+
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99998776 455444
No 302
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=82.65 E-value=19 Score=48.88 Aligned_cols=173 Identities=21% Similarity=0.177 Sum_probs=102.7
Q ss_pred cchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcC-hhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhcCCC
Q 000124 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMR-QDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 636 ~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~-~e~r~~Ive~GaV~~Lv~LL~d----gs~~Vk~~AA~ALanLa~s~ 710 (2138)
..++..+.++++++.-...+ ++..|..+...- .. ....+..+..+++. +++.++..|..+++.+....
T Consensus 394 ~~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~P------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRP------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCC------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 34577777777765333222 445555554421 11 12345556666653 45678888888888876511
Q ss_pred Ccc------cchhhhHHhcCChhhHHhhhh----cCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC---
Q 000124 711 KTK------TTNKMSYIAEGDVKPLIKLAK----TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG--- 777 (2138)
Q Consensus 711 ~~~------d~~r~~I~~~G~V~~Lv~LL~----s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~--- 777 (2138)
... ...+........++.|...+. ..+.+.+..++.||+|+.. +..++.|..++...
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEV 536 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhcccc
Confidence 000 001111223346666776665 3566777889999999962 45788888887776
Q ss_pred CHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHH
Q 000124 778 TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVV 836 (2138)
Q Consensus 778 ~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~AL 836 (2138)
...+|-.|+++|.++....+ ..+.+.|+.++.+..++...|..|...|
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~-----------~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCP-----------EKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-H-----------HHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCc-----------HHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 67899999999998865431 3456778888888888877888887554
No 303
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.23 E-value=1.4e+02 Score=39.15 Aligned_cols=251 Identities=16% Similarity=0.089 Sum_probs=128.8
Q ss_pred HccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHH-HHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCch
Q 000124 441 ITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI-SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIP 519 (2138)
Q Consensus 441 L~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV-~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp 519 (2138)
..+++...+.-|+..|++.+...++....-.. ..+..++ .++...+.+|+..++.+|..+... ..++. ...+.++
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~-~~~~~--l~~~~l~ 342 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK-ASNDD--LESYLLN 342 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-hhhcc--hhhhchh
Confidence 34566778888899999988874544333222 2233344 455666788999999998877642 11111 1122333
Q ss_pred ---HHHHHhhhCCHHHHHHHHHHHHHHhcCC-hhHHHHHH--HcCCcchhhhccccCChhHHHHHHHHHHHHH----Hhh
Q 000124 520 ---PLVQLLEAGSQKAREVAAHVLWILCCHS-EDIRACVE--SAGAVPAFLWLLKSGGPKGQDASAMALTKLI----RAA 589 (2138)
Q Consensus 520 ---~LV~LLks~d~~vre~Aa~aL~nLs~~s-d~~r~~I~--e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs----~~~ 589 (2138)
.+..+.++.+++.|..+...++.|+.-. ...+..+. -.+...+|+-.+.+.+|.+-..+-..+.-+. ...
T Consensus 343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke 422 (533)
T KOG2032|consen 343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKE 422 (533)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHH
Confidence 3445667889999999888877775521 11222222 1345556666778888866555544443221 111
Q ss_pred chhhHHHHHHHhcCCCc-chHHH-HHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000124 590 DSATINQLLALLLGDSP-SSKAH-VIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2138)
Q Consensus 590 e~~aI~~Li~LL~~~d~-~V~~~-A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~ 667 (2138)
.....+.. + +.+. ..+.. .-+|. .+.+ .++|.... .......++++.-+.+|+.+..--.+...+
T Consensus 423 ~~~~~q~~---l-d~~~~~~q~Fyn~~c~-~L~~--i~~d~l~~------~~t~~~~~f~sswe~vr~aavl~t~~~vd~ 489 (533)
T KOG2032|consen 423 LYHLFQES---L-DTDMARFQAFYNQWCI-QLNH--IHPDILML------LLTEDQHIFSSSWEQVREAAVLKTTRSVDS 489 (533)
T ss_pred HHHHHhhh---h-HHhHHHHHHHHHHHHH-HHhh--hCHHHHHH------HHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence 11111111 1 1111 11100 00010 0110 11111110 123333445555567777766655554432
Q ss_pred -ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 000124 668 -RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2138)
Q Consensus 668 -~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~ 708 (2138)
.+..+...-..-....+-.+.++..++++..|..|+..+..
T Consensus 490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 12222222222234566677788999999999999887753
No 304
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.87 E-value=3.1e+02 Score=40.74 Aligned_cols=135 Identities=10% Similarity=0.114 Sum_probs=80.1
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHhhcCchhHHHHhhhchHHHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhch
Q 000124 395 LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKRE 474 (2138)
Q Consensus 395 LV~LL~s~~~e~vr~~Aa~AL~~L~~n~~~~~~L~e~~gI~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~g 474 (2138)
++..+..+. ..+|..|.++|+.+..-+.. .+...+....+..-+..+...+++.|+..++.+....++.....
T Consensus 821 Il~~l~e~~-ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy---- 893 (1692)
T KOG1020|consen 821 ILSVLGENA-IALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY---- 893 (1692)
T ss_pred HHHHhcCch-HHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH----
Confidence 344455333 34899999999988543211 11122222334445566778889999999987665544443333
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHh---hhCCHHHHHHHHHHHHHH
Q 000124 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL---EAGSQKAREVAAHVLWIL 543 (2138)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LL---ks~d~~vre~Aa~aL~nL 543 (2138)
...+..-+.+....||++++..++.++...++.-. .....+++| .+....+++-+.+++.++
T Consensus 894 -Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 894 -YDQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred -HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 23444445566678999999999999985444321 122233333 233444777777777776
No 305
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=81.70 E-value=18 Score=48.94 Aligned_cols=175 Identities=22% Similarity=0.150 Sum_probs=102.5
Q ss_pred ccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhcCCC
Q 000124 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRPT 710 (2138)
Q Consensus 635 ~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~d----gs~~Vk~~AA~ALanLa~s~ 710 (2138)
...++..+.++++++.-...+ ++.++..+...-+. -....++.+..++++ ..+.++..|..+++++....
T Consensus 355 T~~a~~~i~~~i~~~~~~~~e-a~~~~~~~~~~~~~-----Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~ 428 (574)
T smart00638 355 TPPALKFIKQWIKNKKITPLE-AAQLLAVLPHTARY-----PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRY 428 (574)
T ss_pred CHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHhhhc-----CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 344677788888776422211 22222222211000 113455667777765 35568888888888877511
Q ss_pred CcccchhhhHHhcCChhhHHhhhhc----CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHh-C--CCHHHHH
Q 000124 711 KTKTTNKMSYIAEGDVKPLIKLAKT----SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA-E--GTSEGKK 783 (2138)
Q Consensus 711 ~~~d~~r~~I~~~G~V~~Lv~LL~s----~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~-~--~~~~Vr~ 783 (2138)
-.....+........++.|...|.. .+.+.+...+.+|+|+.. +..++.+..++. + ....+|.
T Consensus 429 c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~ 498 (574)
T smart00638 429 CVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRL 498 (574)
T ss_pred hcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHH
Confidence 1100110011123366666666543 455566679999999873 345566666655 2 2468999
Q ss_pred HHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHH
Q 000124 784 NASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVV 836 (2138)
Q Consensus 784 ~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~AL 836 (2138)
.|+++|.+++...+ ......|+.++.+..++...|..|..+|
T Consensus 499 ~Av~Alr~~a~~~p-----------~~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 499 AAILALRNLAKRDP-----------RKVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHHHHhCc-----------hHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 99999999886432 3355678888887777777787776553
No 306
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=81.29 E-value=6.3 Score=52.33 Aligned_cols=119 Identities=24% Similarity=0.259 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCC
Q 000124 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGD 604 (2138)
Q Consensus 528 ~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e---~~aI~~Li~LL~~~ 604 (2138)
++...+.-|+..+...-.+-+...+ .++.+++.|+.+.+..+|..|...|..+|.+.. ..+.+.|.+||..+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~td 108 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTD 108 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcc
Confidence 5788999999999998877666544 378899999999999999999999999997632 56789999999998
Q ss_pred CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhc---CCCHHHHHHHHHHHH
Q 000124 605 SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN---SSNEENQEYAASVLA 662 (2138)
Q Consensus 605 d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLk---s~s~evre~Aa~ALa 662 (2138)
++.....+.++|..+....+. +.+..+..-+. ++++.+|+.+...|.
T Consensus 109 d~~E~~~v~~sL~~ll~~d~k-----------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 109 DPVELDAVKNSLMSLLKQDPK-----------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp -HHHHHHHHHHHHHHHHH-HH-----------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcH-----------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 887777777888776543221 23455554443 567888998887664
No 307
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=81.00 E-value=44 Score=43.26 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=102.8
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcC-CCHHHHHHHHHHHHHHhhcCh
Q 000124 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-SNEENQEYAASVLADLFSMRQ 669 (2138)
Q Consensus 591 ~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks-~s~evre~Aa~ALanL~s~~~ 669 (2138)
.+++..+..++..+...++++ ++.+ .+..+++.+.+ .++..|..|.++|..++...+
T Consensus 305 k~alsel~~m~~e~sfsvWeq----------------~f~~------iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 305 KEALSELPKMLCEGSFSVWEQ----------------HFAE------ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred HHHHHHHHHHHHccchhHHHH----------------HHHH------HHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 456677778888877777664 1112 25667777776 578889999999999998422
Q ss_pred hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000124 670 DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR-PTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2138)
Q Consensus 670 e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~-s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~AL 748 (2138)
.+-.=-.+-++..++..-.+..+.+-..|..+...+.. +.|. .+ |..+..++-..+......++..+
T Consensus 363 -~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~---~~--------I~~i~~~Ilt~D~~~~~~~iKm~ 430 (516)
T KOG2956|consen 363 -ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL---QC--------IVNISPLILTADEPRAVAVIKML 430 (516)
T ss_pred -HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch---hH--------HHHHhhHHhcCcchHHHHHHHHH
Confidence 22211112344555555566666666666655444443 3332 22 22233333334444444566667
Q ss_pred HHhhCCc--hHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 749 ANLLSDP--DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 749 aNLa~~~--e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
..+..+- +.-. -+-.+..|.+++-..+.+..+|+.|+.||--+..
T Consensus 431 Tkl~e~l~~EeL~-~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 431 TKLFERLSAEELL-NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHhhcCHHHHH-HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 7666421 1111 1234688888888888899999999999987765
No 308
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=80.62 E-value=12 Score=51.29 Aligned_cols=144 Identities=11% Similarity=0.105 Sum_probs=102.9
Q ss_pred cCCcchhhhccccCChhHHHHHHHHHHHHHHhh-c-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc--h
Q 000124 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-D-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ--E 626 (2138)
Q Consensus 557 ~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~-e-------~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~--~ 626 (2138)
...+|.|++..++.+...+..-..+|.++-.+- . ....|-|++-|.-.|..++..+.+++-.+...... .
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 356788888777666677778888888877652 1 34557788888888999988888888766533221 1
Q ss_pred HHHHhhhcccchhhHHHHhhcCCC---HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHH
Q 000124 627 DLVQKGSAANKGLRSLVQVLNSSN---EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARAL 703 (2138)
Q Consensus 627 d~v~~~l~~~GaI~aLV~LLks~s---~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~AL 703 (2138)
+.+ .-.++.+..+-++.+ -.+|+.|...|..|...-|...-.-.+..++.+|.+.|.|..--+|++|+++=
T Consensus 946 ~~~------~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 946 EHL------STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HHH------hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 111 113555666555544 56899999999999885566555666778899999999999889999998775
Q ss_pred HHh
Q 000124 704 GAL 706 (2138)
Q Consensus 704 anL 706 (2138)
.+.
T Consensus 1020 ~~W 1022 (1030)
T KOG1967|consen 1020 QNW 1022 (1030)
T ss_pred hhh
Confidence 554
No 309
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=80.53 E-value=16 Score=45.17 Aligned_cols=172 Identities=19% Similarity=0.129 Sum_probs=109.3
Q ss_pred hhhHHH-HhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCc--cc
Q 000124 638 GLRSLV-QVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT--KT 714 (2138)
Q Consensus 638 aI~aLV-~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~--~d 714 (2138)
.+..|+ ..+++.+..+|+.+..+|+-.|-.+.+.... .++.+...+..+++.++..|.+++..+...... .+
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 355555 4678889999999999999888755533322 356677777778999999999999988762211 11
Q ss_pred chh---hhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCC----CHHHHHHHHH
Q 000124 715 TNK---MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG----TSEGKKNASR 787 (2138)
Q Consensus 715 ~~r---~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~----~~~Vr~~Aa~ 787 (2138)
... ...........+.+.+.+.+++++..|++.++.|........ .+..+..|+-.-++. ++++|+--..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 111 012234567778888999999999999999999864322111 134555666444332 4677777777
Q ss_pred HHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhcc
Q 000124 788 ALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNA 821 (2138)
Q Consensus 788 AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s 821 (2138)
.+-..+...+.++ .......++.+-.+.+.
T Consensus 179 Ffp~y~~s~~~~Q----~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQ----ERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHH----HHHHHHHHHHHHHHHhC
Confidence 7777776543222 22223455555555543
No 310
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=80.50 E-value=20 Score=46.84 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=116.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccC----CHHHHHHHHHHHHHhhcCCCCCC
Q 000124 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSE----STDTRKAAAEALYEVSSGGLSDD 160 (2138)
Q Consensus 85 gVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~se----d~eVr~aAa~AL~nLS~~~~nkd 160 (2138)
....+.+++.+++...+..+..-|..++.+......+....++..|.++..+. ..+....++.++..+-.++.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv--- 160 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV--- 160 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce---
Confidence 35678889999999999999999999999999999999999999999999884 35666677777776654321
Q ss_pred hhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000124 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2138)
Q Consensus 161 ~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL 240 (2138)
..-..+...+|.......+.+. .+..+...|+..|-++..+++.....+.+..-++.|+..+...+..++..|...+
T Consensus 161 --vsW~~~~~~fV~~~a~~V~~~~-~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 161 --VSWESVSNDFVVSMASYVNAKR-EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL 237 (713)
T ss_pred --eeeeecccHHHHHHHHHHhhhh-hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence 0111122234444444443222 3445677899999999998887778888899999999999999888888887777
Q ss_pred HHHHh
Q 000124 241 ARLML 245 (2138)
Q Consensus 241 ~nLs~ 245 (2138)
..+..
T Consensus 238 nal~~ 242 (713)
T KOG2999|consen 238 NALFR 242 (713)
T ss_pred HHHHh
Confidence 77663
No 311
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=80.38 E-value=7.9 Score=46.84 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHHHHhcCCHHHHHHhh
Q 000124 231 AAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAI 310 (2138)
Q Consensus 231 evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL 310 (2138)
.....|+++|.-++.-++.++..+.....+..++.++.......++..+..+|..+..+++.+.+.|.+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 34566889999999999999999999999999999997566789999999999999999999999999999999999999
Q ss_pred cCCc
Q 000124 311 VAPS 314 (2138)
Q Consensus 311 ~s~s 314 (2138)
.+.+
T Consensus 186 k~~~ 189 (257)
T PF08045_consen 186 KSKS 189 (257)
T ss_pred cccc
Confidence 8865
No 312
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=79.78 E-value=2.9 Score=33.97 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 767 VSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 767 L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
+|.+.+++.+.+++||..|+++|.+++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999863
No 313
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=79.17 E-value=2.1e+02 Score=40.38 Aligned_cols=238 Identities=16% Similarity=0.150 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHh----cCC----HHHHHHHHHHHH
Q 000124 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR----SGT----PLAKVNVAATLS 109 (2138)
Q Consensus 38 ~~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLk----s~~----~evr~~Aa~~L~ 109 (2138)
+..+.+.|+.....+..-......++.|...++- +.+|+.+.+ .|+++.|++.|+ .+. +++-+..+.++-
T Consensus 119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~-~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLE-LNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHH-cCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 3445556666554444433344445445545555 577777776 899999999885 333 566667777775
Q ss_pred HhccCchhH-H----HHHhcC--------ChHHHHHhhcc----CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCc
Q 000124 110 VLCKDEDLR-L----KVLLGG--------CIPPLLSLLKS----ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGV 172 (2138)
Q Consensus 110 ~Ls~~e~~r-~----~v~~~G--------~Ip~Lv~LL~s----ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~ 172 (2138)
.+..+.... . ...... -++.+++.+.+ .++.+....+++|-.|+.+ ++...+.+++ .
T Consensus 197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G----~~e~m~~Lv~--~ 270 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYG----NEEKMDALVE--H 270 (802)
T ss_pred HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcC----CHHHHHHHHH--H
Confidence 443322111 1 001112 26677777766 3788999999999999985 3333444433 1
Q ss_pred HHHHHH--hhCCCCCCChhHHHHHHHHHHHHhcCCC----c--hhHHHHHhCcHHHHHHhhccCC--------HH-----
Q 000124 173 VPTLWD--QLNPKNKQDNVVQGFVTGALRNLCGDKD----G--YWRATLEAGGVDIIVGLLSSDN--------AA----- 231 (2138)
Q Consensus 173 Ip~Ll~--LL~s~s~ed~~V~e~Al~aL~nLcs~~e----~--r~~aI~e~GGI~~Lv~lL~s~s--------~e----- 231 (2138)
+...++ -++.....+. ...+.+++.++.+-+ + -+..+.+.|.++..+.+|...- ++
T Consensus 271 F~p~l~f~~~D~~~~~~~---~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDE---QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred HHHhcChhhcccccCchH---HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 122212 1111111121 233666666655432 2 2456888898998888887632 22
Q ss_pred ---HHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCC-CHhHHHHHHHHHHHHhh
Q 000124 232 ---AQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN-DISVRASAADALEALSS 288 (2138)
Q Consensus 232 ---vq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~s-d~~vr~~Aa~aL~nLs~ 288 (2138)
....++++|.-|+.++...+.. ...+.+ .++..|.... +..+=..|-..|..+..
T Consensus 348 ~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHEPTQLL-IAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2245677777777666655444 445555 4455554222 33333444444444444
No 314
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=78.95 E-value=27 Score=47.48 Aligned_cols=119 Identities=15% Similarity=0.151 Sum_probs=72.4
Q ss_pred chhhHHHHhhc----CCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC---CHHHHHHHHHHHHHhcCC
Q 000124 637 KGLRSLVQVLN----SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN---TQMVATQSARALGALSRP 709 (2138)
Q Consensus 637 GaI~aLV~LLk----s~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dg---s~~Vk~~AA~ALanLa~s 709 (2138)
..++.|...++ .++.+.+..+..+|+|+.. ...++.|..++.+. +..+|..|.+||.++...
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 34555555554 4567888899999999976 45677888888766 668999999999988653
Q ss_pred CCcccchhhhHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhC-CCHHHHHHHH
Q 000124 710 TKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNAS 786 (2138)
Q Consensus 710 ~~~~d~~r~~I~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~-~~~~Vr~~Aa 786 (2138)
.+. .+.+.|..++.+ .+.++|.+|..+|.. ++|. ...+..+...+.. .+.+|.....
T Consensus 555 ~~~-----------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~--~~P~-------~~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 555 CPE-----------KVREILLPIFMNTTEDPEVRIAAYLILMR--CNPS-------PSVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp -HH-----------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH--T----------HHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred CcH-----------HHHHHHHHHhcCCCCChhHHHHHHHHHHh--cCCC-------HHHHHHHHHHHhhCchHHHHHHHH
Confidence 221 144667777765 567788888766653 3333 2244556665543 3566655443
No 315
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=78.76 E-value=17 Score=41.44 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHH-HHHHHhhhcCcHHHHHHHHhc---------CCHHHHHHHHHHH
Q 000124 39 STVAKFLEQLHANMSSPQERELITMRILTIAKAKKE-ARLLIGSHAQAMPLFISILRS---------GTPLAKVNVAATL 108 (2138)
Q Consensus 39 ~~V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~-ak~lI~~~aGgVp~LV~LLks---------~~~evr~~Aa~~L 108 (2138)
.+...++..++....+. ..+..|....+..+. .-+.+.+ .||+..|+.+|.. .+.+....++++|
T Consensus 66 ~~p~~~i~~L~~~~~~~----~~L~~L~v~Lrt~~~~Wv~~Fl~-~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl 140 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS----KILKSLRVSLRTNPISWVQEFLE-LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCL 140 (187)
T ss_dssp HHHHHHHHHHTTT--HH----HHHHHHHHHHHHS-HHHHHHH-H-HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH----HHHHHHHHHhccCCchHHHHhcc-CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHH
Confidence 44556666664433221 344555544444433 2233334 5899999999964 2447888899999
Q ss_pred HHhccCchhHHHHHhc-CChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 000124 109 SVLCKDEDLRLKVLLG-GCIPPLLSLLKSESTDTRKAAAEALYEVS 153 (2138)
Q Consensus 109 ~~Ls~~e~~r~~v~~~-G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS 153 (2138)
..+.........+... +++..++.+|.+++..+|..++..|..+|
T Consensus 141 kal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 141 KALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9998888877777765 88999999999999999999999999887
No 316
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=78.69 E-value=16 Score=48.82 Aligned_cols=132 Identities=17% Similarity=0.278 Sum_probs=86.3
Q ss_pred hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhh
Q 000124 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2138)
Q Consensus 639 I~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~ 718 (2138)
...++...+ ++...+..|+..+......-|+..+ .++.+++.+..|.+..+|..|.+.|-.++..+++ ..
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v-- 94 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HV-- 94 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---H--
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HH--
Confidence 455555565 5789999999999999886666554 4678999999999999999999999999985443 11
Q ss_pred hHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-CchHHHHHHhcCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Q 000124 719 SYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLA---EGTSEGKKNASRALHQL 792 (2138)
Q Consensus 719 ~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-~~e~r~~Ii~~g~L~~LV~LL~---~~~~~Vr~~Aa~AL~nL 792 (2138)
..++..|+.||.+++......+-.+|..|.. ||. +.+..+..-+. .+++.+|+.+...|..=
T Consensus 95 ----~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 95 ----SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp ----HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 2367889999998887666666666666643 332 23333433333 56788899988777543
No 317
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.21 E-value=36 Score=45.85 Aligned_cols=98 Identities=21% Similarity=0.222 Sum_probs=68.5
Q ss_pred cCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh---hch
Q 000124 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA---ADS 591 (2138)
Q Consensus 515 aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~---~e~ 591 (2138)
.|.+..+++-..+.+..+|..++..|..+.....++.+-+. .+....|..-+.+..|.+|..|..+|..+-.+ ++.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~ 162 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC 162 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence 34556666666778999999999999998753322222221 34455666667888999999999999999744 345
Q ss_pred hhHHHHHHHhc-CCCcchHHHHH
Q 000124 592 ATINQLLALLL-GDSPSSKAHVI 613 (2138)
Q Consensus 592 ~aI~~Li~LL~-~~d~~V~~~A~ 613 (2138)
.+...+..+++ +.+++|+..+.
T Consensus 163 ~v~n~l~~liqnDpS~EVRRaaL 185 (892)
T KOG2025|consen 163 PVVNLLKDLIQNDPSDEVRRAAL 185 (892)
T ss_pred cHHHHHHHHHhcCCcHHHHHHHH
Confidence 67777777776 55667776543
No 318
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=77.65 E-value=1.5e+02 Score=36.46 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=107.1
Q ss_pred CCchHHHHHhhhC--CHHHHHHHHHHHHHHhcCCh-------hHHHHHHHcCCcchhhhccccCC----hhHHHHHHHHH
Q 000124 516 GGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSE-------DIRACVESAGAVPAFLWLLKSGG----PKGQDASAMAL 582 (2138)
Q Consensus 516 GaIp~LV~LLks~--d~~vre~Aa~aL~nLs~~sd-------~~r~~I~e~GaI~aLv~LLkS~~----~evq~~Aa~AL 582 (2138)
|..+-+..++-.| ++..-+.+...|..|+...+ +.|-.+.=-..+|.++.-+.+++ ......+|..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 5666666666555 66667778888888866322 12333333345666666666666 13455777888
Q ss_pred HHHHHhhchhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHH
Q 000124 583 TKLIRAADSATINQLLALL-LGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVL 661 (2138)
Q Consensus 583 ~nLs~~~e~~aI~~Li~LL-~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~AL 661 (2138)
..++.......+..++... +....+.+.....+...+... --++. +...+..|..++.++.+.+|.....+|
T Consensus 140 a~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~-f~P~~------~~~~l~~Ll~lL~n~~~w~~~~~L~iL 212 (262)
T PF14225_consen 140 AQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREA-FFPDH------EFQILTFLLGLLENGPPWLRRKTLQIL 212 (262)
T ss_pred HHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hCchh------HHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 8888654444444444443 344344444444444443211 11111 123577788999999999999999999
Q ss_pred HHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000124 662 ADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2138)
Q Consensus 662 anL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanL 706 (2138)
..+.. ..+.+.. ...+.+.++.++++.+--. +|...|-++
T Consensus 213 ~~ll~-~~d~~~~-~~~dlispllrlL~t~~~~---eAL~VLd~~ 252 (262)
T PF14225_consen 213 KVLLP-HVDMRSP-HGADLISPLLRLLQTDLWM---EALEVLDEI 252 (262)
T ss_pred HHHhc-cccCCCC-cchHHHHHHHHHhCCccHH---HHHHHHHHH
Confidence 99987 3444444 5556889999999775433 344444443
No 319
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=77.63 E-value=44 Score=45.24 Aligned_cols=160 Identities=13% Similarity=0.161 Sum_probs=92.6
Q ss_pred cHHHHHHHHhcC----CHHHHHHHHHHHHHh----ccCchhHHHHHhcCChHHHHHhhcc----CCHHHHHHHHHHHHHh
Q 000124 85 AMPLFISILRSG----TPLAKVNVAATLSVL----CKDEDLRLKVLLGGCIPPLLSLLKS----ESTDTRKAAAEALYEV 152 (2138)
Q Consensus 85 gVp~LV~LLks~----~~evr~~Aa~~L~~L----s~~e~~r~~v~~~G~Ip~Lv~LL~s----ed~eVr~aAa~AL~nL 152 (2138)
.+..+..+++++ .+.++..|.-.++.| |.+.+..........++.+.+.|.. .+.+.+..++++|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 455666666653 344555555555444 4333322111222345666655543 4666778889999998
Q ss_pred hcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhcc--CCH
Q 000124 153 SSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSS--DNA 230 (2138)
Q Consensus 153 S~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s--~s~ 230 (2138)
... . .++.|...+.........++..|+.+|+++....... .-+.+..+..+ .++
T Consensus 474 g~~----~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~ 530 (574)
T smart00638 474 GHP----S-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPP 530 (574)
T ss_pred CCh----h-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCCh
Confidence 851 1 5566666665333345678999999999987544333 44566666655 357
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHH
Q 000124 231 AAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277 (2138)
Q Consensus 231 evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~ 277 (2138)
++|..|+.+|.. .+|. ...+..+...+....+..+..
T Consensus 531 EvRiaA~~~lm~---t~P~-------~~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 531 EVRMAAVLVLME---TKPS-------VALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHHHHHHHh---cCCC-------HHHHHHHHHHHhhcCcHHHHH
Confidence 888888666654 2221 235566666666555545543
No 320
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=77.58 E-value=25 Score=45.99 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=111.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCch----hhHHHHHHHHHHHhhcCchhHH
Q 000124 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSE----QHQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 435 ~~LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~----~Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
..+...+.+++...|..+...|..++.+ +.....++...|+..|.+++.+++. .+....+.+++.+-.+.. ..+
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW 163 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSW 163 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eee
Confidence 4466778888888888899999999988 5666677789999999999988765 455666667666655432 223
Q ss_pred HHHhcCCchHHHHHhhhC--CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 511 AITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLks~--d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
......++...+.+.+-. +..+-..|...|-++...++..+..+.++--+..|+..+...+..++..|...+-.+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 233333444444444322 667778888999999888888999999999999999999999998888876666656543
No 321
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.42 E-value=13 Score=52.29 Aligned_cols=140 Identities=15% Similarity=0.135 Sum_probs=107.1
Q ss_pred HHHHHHHH----ccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchh
Q 000124 434 KKVLIGLI----TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDS 508 (2138)
Q Consensus 434 I~~LV~LL----~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~ 508 (2138)
.+.++..+ ..++++.|..|.-+|+.+..=+...+ ...+|.|+..++ ++++.+|.+++.+++-++..=+ +
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fp-n 994 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP-N 994 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhcc-c
Confidence 45566666 34678999999999998876533332 345789999996 8899999999999999887311 1
Q ss_pred HHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHh
Q 000124 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 509 r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~ 588 (2138)
.-.-..+.|.+-|.+.++.+|+.|..+|.+|-. ..++.-.|-+.-+..++.+++++++.-|-.....|+..
T Consensus 995 ----lie~~T~~Ly~rL~D~~~~vRkta~lvlshLIL-----ndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 995 ----LIEPWTEHLYRRLRDESPSVRKTALLVLSHLIL-----NDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ----ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHH-----hhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 112345677788899999999999999999976 23445578899999999999999988888777777654
No 322
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.39 E-value=6.3 Score=42.34 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=57.7
Q ss_pred hHHHHHHHH-ccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhh
Q 000124 433 AKKVLIGLI-TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE 503 (2138)
Q Consensus 433 gI~~LV~LL-~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~ 503 (2138)
.++.|+.++ .+.++.....|+.-|+.++...|..+..+.+.|+=..+.+++.++|+++|..|+.++..+-.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467788888 44567778888899999999877777777777777889999999999999999999988765
No 323
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=77.04 E-value=22 Score=47.33 Aligned_cols=131 Identities=16% Similarity=0.146 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHH
Q 000124 444 ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLV 522 (2138)
Q Consensus 444 ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV 522 (2138)
+++..|..|.-.|..+-+-+...+ ...+|.|+..++ +++|.+|.+|+.+|+.+..+-... .......|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~-----~de~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT-----ADEHTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhh-----hHHHHHHHH
Confidence 567788888777776544322222 345789999886 889999999999998876531111 122345677
Q ss_pred HHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhh
Q 000124 523 QLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA 589 (2138)
Q Consensus 523 ~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~ 589 (2138)
+-|.+.+..+|+.|..++.+|-..+. +.-.|-++.+..++.+++.++..-|...+..++..+
T Consensus 978 rrL~De~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 77888899999999999999865221 223677888888999999999998888888887654
No 324
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.87 E-value=3.7e+02 Score=38.29 Aligned_cols=159 Identities=18% Similarity=0.113 Sum_probs=100.2
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCC-----CCCChhHHHHHHHHHHHHhcC--CCchhHHHHHhC
Q 000124 144 AAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK-----NKQDNVVQGFVTGALRNLCGD--KDGYWRATLEAG 216 (2138)
Q Consensus 144 aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~-----s~ed~~V~e~Al~aL~nLcs~--~e~r~~aI~e~G 216 (2138)
+|...+..+++ ..|++.+ .|.++.+++.+.+. +..++.-.+-|++++++||+- ..+..+...+.-
T Consensus 391 Aa~~~l~~~~~------KR~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f 462 (1010)
T KOG1991|consen 391 AALDFLTTLVS------KRGKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF 462 (1010)
T ss_pred HHHHHHHHHHH------hcchhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH
Confidence 55555555553 2222333 45788888888722 112334456788888888743 122223344444
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhhcCHHHHHH
Q 000124 217 GVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKA 296 (2138)
Q Consensus 217 GI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~~s~e~Rk~ 296 (2138)
-+..+...+.++..-.|..||++++..+. .+......-..++....+.|.++++.+++..|+.+|..+.+.+..+...
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~--~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSS--IDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHh--ccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhh
Confidence 55666667778778899999999999883 2223333344567777777776788999999999999998865555444
Q ss_pred HHh--cCCHHHHHHhhcC
Q 000124 297 VVA--ADGVPVLIGAIVA 312 (2138)
Q Consensus 297 i~e--~ggL~~LI~LL~s 312 (2138)
+.. .+.++.|+.+...
T Consensus 541 ~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HhhhhhHHHHHHHHHHHh
Confidence 432 3455666665544
No 325
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.16 E-value=43 Score=43.93 Aligned_cols=160 Identities=12% Similarity=0.078 Sum_probs=104.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHH--HHhhcChhhhhhhhhCCCHHHHHHH-hccCCHHHHHHHHHHHHHhcCCCCcccchhh
Q 000124 642 LVQVLNSSNEENQEYAASVLA--DLFSMRQDICGSLATDEIVNPCMRL-LTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2138)
Q Consensus 642 LV~LLks~s~evre~Aa~ALa--nL~s~~~e~r~~Ive~GaV~~Lv~L-L~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~ 718 (2138)
+-+++.+.++-.|.+.+-.++ ....+ +.|++..|+.. .+|+++++|+.|.-||+-++...
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTg---------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-------- 583 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTG---------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-------- 583 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCC---------cchhHhhhheeecccCchHHHHHHHHheeeeEecC--------
Confidence 445666667777776554433 33221 25677777777 68899999999999998887622
Q ss_pred hHHhcCChhhHHhhhh-cCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCC
Q 000124 719 SYIAEGDVKPLIKLAK-TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 719 ~I~~~G~V~~Lv~LL~-s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~ 797 (2138)
...+...+++|. +.+..||-..+-+|+.-+..... .-++..|..++.+.++-+|+.|.-+++-+...+.
T Consensus 584 ----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 584 ----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred ----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 224555566654 57899999888888876654332 2245667788899999999999999998876432
Q ss_pred CchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHH
Q 000124 798 VGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADA 832 (2138)
Q Consensus 798 ~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~A 832 (2138)
+.+.-. -.+.++++-+.....+++...+..|
T Consensus 654 --~~Lnp~--v~~I~k~f~~vI~~Khe~glaklGA 684 (926)
T COG5116 654 --PELNPN--VKRIIKKFNRVIVDKHESGLAKLGA 684 (926)
T ss_pred --cccChh--HHHHHHHHHHHHhhhhHhHHHHHHH
Confidence 222211 1445666766665544444334333
No 326
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=74.37 E-value=7.2 Score=44.63 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=60.6
Q ss_pred eEEEEEecccccccccCCCCceEEEEecCCC-----CccccccccCCCCCcccccee--eecCCCCCCeEEEEEeecCCC
Q 000124 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP-----PRQTKVVSHSISPEWKEGFTW--AFDVPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~t~~~~~~~~p~w~~~f~~--~~~~~p~~~~l~~~~~~~~~~ 2083 (2138)
-+.|+|+.++|+-=.-...+=||...+=-|. +.+|+.+.-+-.|.|||..+| .+-+=|.+-+|.|.+|+....
T Consensus 9 ~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~ 88 (173)
T cd08693 9 KFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKK 88 (173)
T ss_pred CEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEeccc
Confidence 4889999999995311333445554222232 336877776778999999888 556778999999999987432
Q ss_pred C-----------------CcccceEEEEecc
Q 000124 2084 G-----------------KSTLGKVTIQIDK 2097 (2138)
Q Consensus 2084 ~-----------------k~~~g~~~~~~~~ 2097 (2138)
+ ..-+|.++++|=|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 89 AKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ccccccccccccccccCcceEEEEEeEEEEc
Confidence 2 2468999998865
No 327
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=73.95 E-value=4.7 Score=32.79 Aligned_cols=28 Identities=43% Similarity=0.616 Sum_probs=25.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 000124 127 IPPLLSLLKSESTDTRKAAAEALYEVSS 154 (2138)
Q Consensus 127 Ip~Lv~LL~sed~eVr~aAa~AL~nLS~ 154 (2138)
+|.+++++.+++++||..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999985
No 328
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.74 E-value=95 Score=43.02 Aligned_cols=213 Identities=15% Similarity=0.118 Sum_probs=127.0
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcC
Q 000124 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAG 558 (2138)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~G 558 (2138)
-+..+.++-..+|-.++..|+.+... .+....+...+.+...+..|++.++-+=-.|..++..|+...+ +.
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~ 802 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------ED 802 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hh
Confidence 34444556667899999999999873 3555566677889999999999999888888887777765211 22
Q ss_pred Ccchhhh-cccc---CCh-------hHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc--
Q 000124 559 AVPAFLW-LLKS---GGP-------KGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-- 625 (2138)
Q Consensus 559 aI~aLv~-LLkS---~~~-------evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~-- 625 (2138)
.+|.|.+ .... ..+ ++-.+.+.+++.++..-....+..++...++.+...+..+...+|.+......
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 3344433 1111 112 23334444444444332334566667777766555677788888887755331
Q ss_pred hHHHHhhhcccchhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhC---CCHHHHHHHhcc-CCHHHHHHHH
Q 000124 626 EDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATD---EIVNPCMRLLTS-NTQMVATQSA 700 (2138)
Q Consensus 626 ~d~v~~~l~~~GaI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~---GaV~~Lv~LL~d-gs~~Vk~~AA 700 (2138)
.+.+ ...+..++.+.+.+ +.-+|..|+..+..+-.+.....-.+.+. +....+....+. .++.+|..|.
T Consensus 883 sd~~------~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaq 956 (982)
T KOG4653|consen 883 SDFF------HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQ 956 (982)
T ss_pred hHHH------HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 1111 22456666666654 78899999999999887544333333222 222333333333 3445677776
Q ss_pred HHHHHh
Q 000124 701 RALGAL 706 (2138)
Q Consensus 701 ~ALanL 706 (2138)
.++-.+
T Consensus 957 l~leei 962 (982)
T KOG4653|consen 957 LCLEEI 962 (982)
T ss_pred HHHHHH
Confidence 666544
No 329
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=73.69 E-value=47 Score=42.47 Aligned_cols=215 Identities=17% Similarity=0.046 Sum_probs=117.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhc-CCHHHHHHHH-HHHHHhccCchhH
Q 000124 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-GTPLAKVNVA-ATLSVLCKDEDLR 118 (2138)
Q Consensus 41 V~qlLe~L~~~s~s~~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks-~~~evr~~Aa-~~L~~Ls~~e~~r 118 (2138)
|.-+++.+. ++.....|..++-.|..-|..+ ..+..+.. .|.+..+++.+.. +++.....++ .++..++.+...-
T Consensus 23 v~ylld~l~-~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra-~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 23 VEYLLDGLE-SSSSSSVRRSSLLELASKCADP-QFRRQFRA-HGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHhhcc-cCCCccHHHHHHHHHHHHhCCH-HHHHHHHH-cCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 666677776 3444456777777777666654 66666666 5889999999954 4442444443 3335555544333
Q ss_pred HHHHhcCChHHHHHhhc-----c--CC-------------------------------------HHHHHHHHHHHHHhhc
Q 000124 119 LKVLLGGCIPPLLSLLK-----S--ES-------------------------------------TDTRKAAAEALYEVSS 154 (2138)
Q Consensus 119 ~~v~~~G~Ip~Lv~LL~-----s--ed-------------------------------------~eVr~aAa~AL~nLS~ 154 (2138)
..+...+....+++++. + .+ ..-+.-|..+|..++.
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~ 179 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVR 179 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHH
Confidence 33333344444455554 0 00 1112233344444420
Q ss_pred C----C-----CC-CChhhHHHHHHcCcHHHHHHhhCC----CC---------CCChhHHHHHHHHHHHHhcCCCchhHH
Q 000124 155 G----G-----LS-DDHVGMKIFVTEGVVPTLWDQLNP----KN---------KQDNVVQGFVTGALRNLCGDKDGYWRA 211 (2138)
Q Consensus 155 ~----~-----~n-kd~~gre~IveaG~Ip~Ll~LL~s----~s---------~ed~~V~e~Al~aL~nLcs~~e~r~~a 211 (2138)
. + .+ -....++.+...|++..+++.+.. .. ..+-.....++++|-+.+..++.++..
T Consensus 180 ~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~ 259 (361)
T PF07814_consen 180 SLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSY 259 (361)
T ss_pred HHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHH
Confidence 0 0 00 011225566677789899888752 11 011123456777888887777666555
Q ss_pred HHHhC--c-HHHHHHhhcc---CCHHHHHHHHHHHHHHHhhcCCCcchhhccc
Q 000124 212 TLEAG--G-VDIIVGLLSS---DNAAAQSNAASLLARLMLAFGDSIPTVIDSG 258 (2138)
Q Consensus 212 I~e~G--G-I~~Lv~lL~s---~s~evq~~A~~aL~nLs~~~~e~r~~l~~~G 258 (2138)
..... . +..+..++.. ...+....+++++.|++..++..+..+...+
T Consensus 260 l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 260 LLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 44432 1 2333333332 2244567889999999988888877776553
No 330
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.85 E-value=1.1e+02 Score=41.64 Aligned_cols=180 Identities=17% Similarity=0.105 Sum_probs=108.1
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchh
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r 717 (2138)
.+..++.-..+.+..+|...+..|+.+.. ....+...+-.+....+..-+.|..+.||.+|..||..+-.. +.++.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-~~dee-- 161 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD-PKDEE-- 161 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC-CCCCc--
Confidence 45566666677789999999999999887 333444444456667777778899999999999999998631 21122
Q ss_pred hhHHhcCChhhHHhhhh-cCCHHHHHHHHHHHHHhhCCchHHHHHH--------------hcCc----------HHHHHH
Q 000124 718 MSYIAEGDVKPLIKLAK-TSSIDAAETAVAALANLLSDPDIAAEVL--------------LEDV----------VSALTR 772 (2138)
Q Consensus 718 ~~I~~~G~V~~Lv~LL~-s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii--------------~~g~----------L~~LV~ 772 (2138)
..++..+..++. +++++||..|+. |++-++..+..|+ -+.+ +..-+.
T Consensus 162 -----~~v~n~l~~liqnDpS~EVRRaaLs---nI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~ 233 (892)
T KOG2025|consen 162 -----CPVVNLLKDLIQNDPSDEVRRAALS---NISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVL 233 (892)
T ss_pred -----ccHHHHHHHHHhcCCcHHHHHHHHH---hhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHH
Confidence 336777888775 588999997654 4433332221111 1111 112222
Q ss_pred ----HHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000124 773 ----VLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2138)
Q Consensus 773 ----LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~ 841 (2138)
-+.+.+..++.++..+|..=.-.. ..|-+..++.-++ .+........|+++|=...+
T Consensus 234 LlewgLnDRe~sVk~A~~d~il~~Wl~~-----------~dgni~ElL~~ld-vsnss~vavk~lealf~~v~ 294 (892)
T KOG2025|consen 234 LLEWGLNDREFSVKGALVDAILSGWLRF-----------SDGNILELLERLD-VSNSSEVAVKALEALFSGVR 294 (892)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHhhh-----------ccccHHHHHHHhc-cccchHHHHHHHHHHHHHHH
Confidence 234445566666666664322211 1345556666664 33333457778887766433
No 331
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=72.71 E-value=14 Score=43.05 Aligned_cols=103 Identities=23% Similarity=0.204 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhc----------------CChHHHHHhhcc------CCHHHHHHHHHHHHHhhcC
Q 000124 98 PLAKVNVAATLSVLCKDEDLRLKVLLG----------------GCIPPLLSLLKS------ESTDTRKAAAEALYEVSSG 155 (2138)
Q Consensus 98 ~evr~~Aa~~L~~Ls~~e~~r~~v~~~----------------G~Ip~Lv~LL~s------ed~eVr~aAa~AL~nLS~~ 155 (2138)
...-..++++|.|+++.++....+... ..+..|+.+... +..+--...+..|.|+++
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~- 87 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ- 87 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-
Confidence 334556788889998887777655543 245666666544 344556788999999996
Q ss_pred CCCCChhhHHHHHHcC--c--HHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCch
Q 000124 156 GLSDDHVGMKIFVTEG--V--VPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGY 208 (2138)
Q Consensus 156 ~~nkd~~gre~IveaG--~--Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r 208 (2138)
.+.||+.+.+.. . +..|+..+...+ ..-+.-++++++|.|-+.+.+
T Consensus 88 ----~~~gR~~~l~~~~~~~~l~kLl~ft~~~s---~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 88 ----LPEGRQFFLDPQRYDGPLQKLLPFTEHKS---VIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred ----CHHHHHHHhCchhhhhHHHHHHHHhccCc---HHHHHHHHHHHHHhhccHhHH
Confidence 678999998764 3 666776666553 445778999999999987766
No 332
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=72.70 E-value=22 Score=49.05 Aligned_cols=154 Identities=19% Similarity=0.167 Sum_probs=102.2
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhh
Q 000124 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~ 671 (2138)
+++|.+++........++..-..+|+++....+.+-.. .. -+..++-|++.+.-++..+|-.+...+.-+....+..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vll-p~--~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLL-PQ--FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhc-cc--hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 46788888888777777777778888776544432111 11 1334677778887788888888888777665422211
Q ss_pred hhhhhhCCCHHHHHHHhccCC---HHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000124 672 CGSLATDEIVNPCMRLLTSNT---QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2138)
Q Consensus 672 r~~Ive~GaV~~Lv~LL~dgs---~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~AL 748 (2138)
...- -.-.++.++.+=++.+ ..+|..|..+|..|.+-.|. .+-.-....+++.|++.|.++..-||.+|..+=
T Consensus 944 ~t~~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~---~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 944 QTEH-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT---KSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred chHH-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC---cccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1110 1124555555555544 57999999999999874444 222233456889999999999899999999988
Q ss_pred HHhh
Q 000124 749 ANLL 752 (2138)
Q Consensus 749 aNLa 752 (2138)
.+|.
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 7774
No 333
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=72.06 E-value=78 Score=38.59 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=104.4
Q ss_pred HhhcCchhHHHHhhhchHHHHHHHHccCC-----HHHHHHHHHHHHHhhhc-cchhhHHhhhchhHHHHHHHhcCCchhh
Q 000124 417 SLYGNIFLSQWVSHAEAKKVLIGLITMAT-----ADVREYLILSLTKLCRR-EVGIWEAIGKREGIQLLISLLGLSSEQH 490 (2138)
Q Consensus 417 ~L~~n~~~~~~L~e~~gI~~LV~LL~sss-----~evq~~Aa~aL~~Ls~~-s~~~~~~I~e~ggIp~LV~LL~s~d~~V 490 (2138)
.++.+++.+..+.+....-+|.+.+...+ +..+....+.++.+.+. +.+....+.+.+.+|..++.++.+++-.
T Consensus 76 ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselS 155 (262)
T PF04078_consen 76 CVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELS 155 (262)
T ss_dssp HHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHH
T ss_pred HHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHH
Confidence 45789999999999988878888776544 55677777888888773 3466677778899999999999999999
Q ss_pred HHHHHHHHHHHhhcCchhHHHHH--------hcCCchHHHHH-hhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcc
Q 000124 491 QEYAVQLIAILTEQVDDSKWAIT--------AAGGIPPLVQL-LEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVP 561 (2138)
Q Consensus 491 r~~Aa~aL~nLa~~s~e~r~~I~--------~aGaIp~LV~L-Lks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~ 561 (2138)
|..|..++.++-.+ +..-..+. -...+..++.- .+.+++.+.+...++-..|+. +...+..+.. .+|
T Consensus 156 KtvAtfIlqKIL~d-d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~--~LP 231 (262)
T PF04078_consen 156 KTVATFILQKILLD-DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ--CLP 231 (262)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH--HS-
T ss_pred HHHHHHHHHHHHcc-hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH--hCc
Confidence 99999999888663 22211111 11233444443 345588888999999999976 4445555442 333
Q ss_pred hhh-----hccccCChhHHHHHHHHHHHH
Q 000124 562 AFL-----WLLKSGGPKGQDASAMALTKL 585 (2138)
Q Consensus 562 aLv-----~LLkS~~~evq~~Aa~AL~nL 585 (2138)
..+ .-+-.+++.+++.-...+.|+
T Consensus 232 ~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 232 DQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 322 112234666776666666554
No 334
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=71.87 E-value=3.2 Score=42.04 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=50.7
Q ss_pred EEEecCCCCccccccccCCCCCccccceeeecCCCCCC-eEEEEEeecCCCCCcccceEEEEecce
Q 000124 2034 RLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQ-KLHIICKSKNTFGKSTLGKVTIQIDKV 2098 (2138)
Q Consensus 2034 ~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~-~l~~~~~~~~~~~k~~~g~~~~~~~~v 2098 (2138)
.||+.|--+-||.+-.-+.||+.+|+|-|.+..--+.+ .|.+.|.+ .+-+|+.+|.|-+.++..
T Consensus 28 ~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~ 92 (103)
T cd08684 28 ILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTL 92 (103)
T ss_pred EEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccC
Confidence 36774444457989999999999999999875443433 68899998 788999999999988753
No 335
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=71.41 E-value=7.1 Score=44.46 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=64.8
Q ss_pred HHHHHHcCcHHHHHHhhCCC------CCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHH
Q 000124 164 MKIFVTEGVVPTLWDQLNPK------NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAA 237 (2138)
Q Consensus 164 re~IveaG~Ip~Ll~LL~s~------s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~ 237 (2138)
.+.|++.||+..|++.|..- ...+..+...+++||+.++....|....+.+.+++..|+..|.+++..++..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 56788899999999888532 113445677899999999999888877777788999999999999999999999
Q ss_pred HHHHHHH
Q 000124 238 SLLARLM 244 (2138)
Q Consensus 238 ~aL~nLs 244 (2138)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999887
No 336
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=69.63 E-value=1.8e+02 Score=37.22 Aligned_cols=270 Identities=16% Similarity=0.143 Sum_probs=134.3
Q ss_pred HHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-CHHHHHHHHH-HHHHHhcCChhHHH
Q 000124 476 IQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAH-VLWILCCHSEDIRA 552 (2138)
Q Consensus 476 Ip~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-d~~vre~Aa~-aL~nLs~~sd~~r~ 552 (2138)
+..+++=++ +.+..+|..++.-|+.-+. +++-|..+...|....+.+.+... +..+-..++. +++-++.+ ...-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d-~~~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD-GLNMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC-Ccchh
Confidence 445555454 3355688888877877776 688899999999999999999544 4434444444 44444443 22333
Q ss_pred HHHHcCCcchhhhccccC-----ChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcC---------CCcchHHHHHHHHHH
Q 000124 553 CVESAGAVPAFLWLLKSG-----GPKGQDASAMALTKLIRAADSATINQLLALLLG---------DSPSSKAHVIKVLGH 618 (2138)
Q Consensus 553 ~I~e~GaI~aLv~LLkS~-----~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~---------~d~~V~~~A~~AL~~ 618 (2138)
.+.+.+....++.+++.. .......-...+.... ...+..+.+.+.. ...+-+..+..|+-.
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~----~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~ 176 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQ----QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALES 176 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHH----HHHHHHHHHHHhccccccccCCcccccccHHHHHHHH
Confidence 334455555556666611 0010000011111110 0111111111100 001112223333332
Q ss_pred HH-----------hhhcchHHHHhhhcccchhhHHHHhhcC----C------------CHHHHHHHHHHHHHHhhcChhh
Q 000124 619 VL-----------TMALQEDLVQKGSAANKGLRSLVQVLNS----S------------NEENQEYAASVLADLFSMRQDI 671 (2138)
Q Consensus 619 La-----------~~~~~~d~v~~~l~~~GaI~aLV~LLks----~------------s~evre~Aa~ALanL~s~~~e~ 671 (2138)
+. ......+.++..++.-|++..++..+.. . +-..-+.+.++|-+.+..+.++
T Consensus 177 l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~n 256 (361)
T PF07814_consen 177 LVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEEN 256 (361)
T ss_pred HHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccc
Confidence 21 1112223445567788899999998751 1 1123456777777777666666
Q ss_pred hhhhhhC--CCH-HHHHHHhcc---CCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhh-------h----
Q 000124 672 CGSLATD--EIV-NPCMRLLTS---NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA-------K---- 734 (2138)
Q Consensus 672 r~~Ive~--GaV-~~Lv~LL~d---gs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL-------~---- 734 (2138)
....... +.+ ..+..++.. ........+.+.+.|++..++. .+..+...++...+..+. .
T Consensus 257 q~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~---~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 257 QSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS---ACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc---chHhhhhhHhccchHHHHHhhccccccccc
Confidence 6666544 222 333333332 2233456778888888865443 333333333333221111 1
Q ss_pred ---cCCHHHHHHHHHHHHHhhCC
Q 000124 735 ---TSSIDAAETAVAALANLLSD 754 (2138)
Q Consensus 735 ---s~s~~Vr~eAl~ALaNLa~~ 754 (2138)
....+...-++.+|.||+.+
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEH 356 (361)
T ss_pred ccccccchHHHHHHHhHHHheee
Confidence 12244555688888888753
No 337
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=69.39 E-value=33 Score=40.01 Aligned_cols=93 Identities=14% Similarity=0.076 Sum_probs=67.4
Q ss_pred CcHHHHHHHHhc------CCHHHHHHHHHHHHHhccCchhHHHHHhc--CC--hHHHHHhhccCCHHHHHHHHHHHHHhh
Q 000124 84 QAMPLFISILRS------GTPLAKVNVAATLSVLCKDEDLRLKVLLG--GC--IPPLLSLLKSESTDTRKAAAEALYEVS 153 (2138)
Q Consensus 84 GgVp~LV~LLks------~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~--G~--Ip~Lv~LL~sed~eVr~aAa~AL~nLS 153 (2138)
..+..|+..+.. +..+--.+.+.++.|++..++.|..+... +. +..|+.+..+.+..-|..++.+|.|.|
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC 131 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence 367888888766 23456678999999999999999999875 33 677777777788888999999999999
Q ss_pred cCCCCCChhhHHHHHH---cCcHHHHHHhhC
Q 000124 154 SGGLSDDHVGMKIFVT---EGVVPTLWDQLN 181 (2138)
Q Consensus 154 ~~~~nkd~~gre~Ive---aG~Ip~Ll~LL~ 181 (2138)
.. ...-..+.. -+++|.|+--|.
T Consensus 132 Fd-----~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 132 FD-----TDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cc-----HhHHHHhcCchhhhhHHHHHhhcc
Confidence 84 222233333 245555555554
No 338
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=68.65 E-value=13 Score=41.53 Aligned_cols=87 Identities=24% Similarity=0.379 Sum_probs=59.5
Q ss_pred eEEEEEeccccccc-ccCCCCceEEEEecCC-----CCccccccccCCCCCccccceee--ecCCCCCCeEEEEEeecCC
Q 000124 2011 CLTVTIKRGNNLKQ-TMGTTNAFCRLTIGNG-----PPRQTKVVSHSISPEWKEGFTWA--FDVPPKGQKLHIICKSKNT 2082 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~t~~~~~~~~p~w~~~f~~~--~~~~p~~~~l~~~~~~~~~ 2082 (2138)
-+.|.|+...+.-- .-...+=|+...+--| ++..|+.+..+.++.|||..+|. +-+=|..-+|.|.+|+.+.
T Consensus 9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~ 88 (156)
T cd08380 9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE 88 (156)
T ss_pred CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence 36677777666532 0022334444433222 23357777776789999988886 6678899999999999866
Q ss_pred CC---CcccceEEEEecc
Q 000124 2083 FG---KSTLGKVTIQIDK 2097 (2138)
Q Consensus 2083 ~~---k~~~g~~~~~~~~ 2097 (2138)
.+ +.-+|.++++|=|
T Consensus 89 ~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 89 PGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred CCCCcceEEEEEeEEeEc
Confidence 54 4789999999976
No 339
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=68.63 E-value=2.9e+02 Score=33.95 Aligned_cols=145 Identities=14% Similarity=0.150 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHhhhccchhhHHhhhc-hhHHHHHH----Hh---cCCc--h---hhHHHHHHHHHHHhhcCchhHH
Q 000124 444 ATADVREYLILSLTKLCRREVGIWEAIGKR-EGIQLLIS----LL---GLSS--E---QHQEYAVQLIAILTEQVDDSKW 510 (2138)
Q Consensus 444 ss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~-ggIp~LV~----LL---~s~d--~---~Vr~~Aa~aL~nLa~~s~e~r~ 510 (2138)
.+++.++.|..-|..--...++..-.+-.. |.+..|++ .+ ..++ . .-..+|+..|..++. +++.|.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 356667777655554433333433333333 33333332 22 2111 1 223456666677777 689999
Q ss_pred HHHhcCCchHHHHHhhhC-----CHHHHHHHHHHHHHHhcCC-hhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHH
Q 000124 511 AITAAGGIPPLVQLLEAG-----SQKAREVAAHVLWILCCHS-EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTK 584 (2138)
Q Consensus 511 ~I~~aGaIp~LV~LLks~-----d~~vre~Aa~aL~nLs~~s-d~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~n 584 (2138)
.+.++...-.|.-+|+.. ....|-.+.++++.|...+ .+.-.++.+.+.+|..++.++.|+.-.+.-|...+.+
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999988777777777654 3567889999999998743 3466677788999999999999988888888888888
Q ss_pred HHHhh
Q 000124 585 LIRAA 589 (2138)
Q Consensus 585 Ls~~~ 589 (2138)
+-.++
T Consensus 166 IL~dd 170 (262)
T PF04078_consen 166 ILLDD 170 (262)
T ss_dssp HHHSH
T ss_pred HHcch
Confidence 87653
No 340
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.00 E-value=44 Score=46.02 Aligned_cols=186 Identities=14% Similarity=0.087 Sum_probs=114.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHH
Q 000124 89 FISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFV 168 (2138)
Q Consensus 89 LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~Iv 168 (2138)
-+..+.++.+.+|.+++..|..+.........+...+.+...+..|+++|+.+-..|.+.+..||.- .
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev------------y 799 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV------------Y 799 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh------------c
Confidence 3444455667799999999999987666666666668889999999999999999999988888842 3
Q ss_pred HcCcHHHHHHhhCCC-CCCChhHHHHHHHHHHHHhcCCCchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000124 169 TEGVVPTLWDQLNPK-NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAF 247 (2138)
Q Consensus 169 eaG~Ip~Ll~LL~s~-s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nLs~~~ 247 (2138)
.+..+|.|.+.-.+. ++.....+-..-.++.++...--.-.. -..+--+...++..++++...|..++..|.++|...
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~-~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF-KYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH-HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 345788888844332 221011122222333333321100000 000113555666667666777999999999998422
Q ss_pred CCCcchhhccchHHHHHHHhccCCCHhHHHHHHHHHHHHhh
Q 000124 248 GDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSS 288 (2138)
Q Consensus 248 ~e~r~~l~~~GaL~~LL~LL~s~sd~~vr~~Aa~aL~nLs~ 288 (2138)
.-.... .=..+...++.+...+.+..+|+.|...+..+..
T Consensus 879 a~~vsd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 879 AFQVSD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred hhhhhH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 111111 1112455566666666777888888887777655
No 341
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.77 E-value=1.8e+02 Score=38.35 Aligned_cols=155 Identities=13% Similarity=0.035 Sum_probs=93.4
Q ss_pred ccchhhHHHHhh----cCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhcCC
Q 000124 635 ANKGLRSLVQVL----NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL-TSNTQMVATQSARALGALSRP 709 (2138)
Q Consensus 635 ~~GaI~aLV~LL----ks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL-~dgs~~Vk~~AA~ALanLa~s 709 (2138)
+.|.+..++..+ .+++...|..|++.|.|..++-|+-+..... -.+..++.-| .+.+.+|..+|..+|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 344554444433 4457789999999999999875555444333 2344455444 556788999999999887642
Q ss_pred CCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHh--cCcHHHHHHHHhCCCHHHHHHH
Q 000124 710 TKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLL--EDVVSALTRVLAEGTSEGKKNA 785 (2138)
Q Consensus 710 ~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~--~g~L~~LV~LL~~~~~~Vr~~A 785 (2138)
.. +++.... =-.+.-.+..+.++.+++++-+|...++.|+. +..++..+.+ .+...+|+-.+.+.++.+-. |
T Consensus 331 ~~-~~~l~~~--~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-A 406 (533)
T KOG2032|consen 331 AS-NDDLESY--LLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-A 406 (533)
T ss_pred hh-hcchhhh--chhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-H
Confidence 11 1111111 11244456778889999999998888888864 3444444332 22344455556677776643 4
Q ss_pred HHHHHHhhh
Q 000124 786 SRALHQLLK 794 (2138)
Q Consensus 786 a~AL~nL~~ 794 (2138)
++...+.|.
T Consensus 407 Cr~~~~~c~ 415 (533)
T KOG2032|consen 407 CRSELRTCY 415 (533)
T ss_pred HHHHHHhcC
Confidence 555555554
No 342
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=66.28 E-value=15 Score=39.64 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=55.6
Q ss_pred CchHHHHHHHHhhhcCCchhhHHHHHHHhhhhhhhccchhhHHHhhcChHHHHHHhhcCChhhHhHHHHHHHHHhc
Q 000124 1802 ASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFS 1877 (2138)
Q Consensus 1802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1877 (2138)
+.....|.|+.+|+.......-.||.-=+.-||-|--.-|+-+...||-..|-+|+.++|+|+.-||=.-+--|.+
T Consensus 40 ~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 40 NNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4678899999999655433344444445788998887777777789999999999999999999998765544443
No 343
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=65.74 E-value=24 Score=40.00 Aligned_cols=88 Identities=26% Similarity=0.294 Sum_probs=67.3
Q ss_pred HHHHhhcCChhhHhHHHHHHHHHhcc---hhhHHHhHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHhh---cCCccc
Q 000124 1853 VQELLLSTNAEVAGQAALLTKFLFSN---HTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFM---NFPKLH 1926 (2138)
Q Consensus 1853 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 1926 (2138)
+..||.|++++.=-=+..|++-++.+ -.+.++. ...+|.|...||+ =...++-+-.+++|+.||. .||.|
T Consensus 30 i~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-~~W~~~Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~~~p~l- 105 (165)
T PF08167_consen 30 INSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHG-SQWLRALLSILEK--PDPPSVLEAAIITLTRLFDLIRGKPTL- 105 (165)
T ss_pred HHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhcCCCch-
Confidence 67889999988887788888888877 3453444 6789999999999 2333455677788888885 67887
Q ss_pred ccccchhhhhHHHhhhcc
Q 000124 1927 TSEAATLCIPHLVGALKS 1944 (2138)
Q Consensus 1927 ~~~~~~~~~~~~~~~~~~ 1944 (2138)
.-|.+|-.+|-++.++=.
T Consensus 106 ~Rei~tp~l~~~i~~ll~ 123 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQ 123 (165)
T ss_pred HHHHhhccHHHHHHHHHH
Confidence 668899999999887643
No 344
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=61.54 E-value=32 Score=40.02 Aligned_cols=86 Identities=15% Similarity=0.216 Sum_probs=51.3
Q ss_pred cccccccCCCCCccccceeeecCCCCCCeEEEEE--eecCCC---CCcccceEEEEec----ceeecceecc-eeecCCC
Q 000124 2044 QTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIIC--KSKNTF---GKSTLGKVTIQID----KVVTEGVYSG-LFNLNHD 2113 (2138)
Q Consensus 2044 ~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~--~~~~~~---~k~~~g~~~~~~~----~v~~~~~~~~-~~~l~~~ 2113 (2138)
+|-|.-++.+|+|+|+|-..+..- ..+.-|+-. ...++. .+.-+|..=+.|- .++.+|...= -|..++.
T Consensus 56 ~S~V~yH~~~P~W~EtiKi~lP~~-~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~~gt~l~Dg~H~L~vyk~d~~ 134 (189)
T cd08695 56 RSFVLYHNNSPRWNETIKLPIPID-KFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMREDGTTLPDGSHELYVYKCDEN 134 (189)
T ss_pred EEEEEEcCCCCCCceeEEEecChh-hCCCeeEEEEEEEeeeccCCCCCceEEEEEeecccCCcEEcCCcEEEEEEecccc
Confidence 488999999999999999887643 555555433 222222 3456898888872 4566665521 2333432
Q ss_pred CCCCCCccceEEEEEecCC
Q 000124 2114 NNKDSSSRTLEIEIIWSNR 2132 (2138)
Q Consensus 2114 ~~~~~~~~~~~~~~~w~~~ 2132 (2138)
.+.+|+.+ .+.+.|+..
T Consensus 135 ~~~~~~~~--YL~lp~~~~ 151 (189)
T cd08695 135 ATFLDPAL--YLGLPCSKE 151 (189)
T ss_pred ccccCccc--eEECCcccc
Confidence 12444333 456777653
No 345
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=61.24 E-value=20 Score=40.55 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=60.2
Q ss_pred eEEEEEecccccccccCCCCceEEEEecCCCC-----ccccccccCCCCCcccccee--eecCCCCCCeEEEEEeecCCC
Q 000124 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPP-----RQTKVVSHSISPEWKEGFTW--AFDVPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~t~~~~~~~~p~w~~~f~~--~~~~~p~~~~l~~~~~~~~~~ 2083 (2138)
-+.|.|+.+.++-=. -..+=||+..+=-|.+ .+|+-+.- .+|.|||-.+| -+-+=|.+-+|.|.+|+.+..
T Consensus 9 ~~~v~i~~~~~~~~~-~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~ 86 (158)
T cd08398 9 NLRIKILCATYVNVN-DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR 86 (158)
T ss_pred CeEEEEEeeccCCCC-CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecc
Confidence 478999999988322 3456677775434432 34665664 67999998777 556778999999999987542
Q ss_pred -C--C--cccceEEEEecc
Q 000124 2084 -G--K--STLGKVTIQIDK 2097 (2138)
Q Consensus 2084 -~--k--~~~g~~~~~~~~ 2097 (2138)
+ + .-+|.++++|=|
T Consensus 87 ~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 87 KGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred cCCCCceEEEEEEEEEEEC
Confidence 2 2 239999999966
No 346
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.43 E-value=2.1e+02 Score=39.89 Aligned_cols=143 Identities=13% Similarity=0.087 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhhcCchhHHHHhhh--------chHHHHHHHHc----cCCHHHHHHHHHHHHHhhhccchhhHHhhhch
Q 000124 407 VQERVLEAMASLYGNIFLSQWVSHA--------EAKKVLIGLIT----MATADVREYLILSLTKLCRREVGIWEAIGKRE 474 (2138)
Q Consensus 407 vr~~Aa~AL~~L~~n~~~~~~L~e~--------~gI~~LV~LL~----sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~g 474 (2138)
+-.+|...|.-+.+-+++++++.+. +|+..++..-. -.++++++.|..++.++.+..+..+..++..-
T Consensus 625 ~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v 704 (1516)
T KOG1832|consen 625 LLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAV 704 (1516)
T ss_pred HHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhc
Confidence 4455555555555666777666543 23433333221 13789999999999999988777765443111
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-----CHHHHHHHHHHHHHHhcCChh
Q 000124 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-----SQKAREVAAHVLWILCCHSED 549 (2138)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-----d~~vre~Aa~aL~nLs~~sd~ 549 (2138)
+- .++++.....+-.--..|-.+-..-+..+...++|..|+.||.-. -..+|..|+.+|.-|+. ++.
T Consensus 705 ~S-------~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR-~~t 776 (1516)
T KOG1832|consen 705 GS-------QSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLAR-DDT 776 (1516)
T ss_pred cc-------cCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc-CcH
Confidence 10 011111100000000001110112334455678999999999754 35789999999999988 456
Q ss_pred HHHHHHHc
Q 000124 550 IRACVESA 557 (2138)
Q Consensus 550 ~r~~I~e~ 557 (2138)
.|.++.+-
T Consensus 777 VrQIltKL 784 (1516)
T KOG1832|consen 777 VRQILTKL 784 (1516)
T ss_pred HHHHHHhC
Confidence 67766543
No 347
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=59.16 E-value=11 Score=41.58 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=41.9
Q ss_pred cccccccC-CCCCccccceee--ecCCCCCCeEEEEEeecCCCCC-----cccceEEEEecce
Q 000124 2044 QTKVVSHS-ISPEWKEGFTWA--FDVPPKGQKLHIICKSKNTFGK-----STLGKVTIQIDKV 2098 (2138)
Q Consensus 2044 ~t~~~~~~-~~p~w~~~f~~~--~~~~p~~~~l~~~~~~~~~~~k-----~~~g~~~~~~~~v 2098 (2138)
.|++++-+ ..|.|||..+|. +-+=|..-+|.|.+++.+...+ ..+|.+.++|=|-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 47777777 899999977776 5667899999999999877654 5899999998763
No 348
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=58.34 E-value=3.8e+02 Score=33.96 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=113.9
Q ss_pred hhHHHHhhcCCCHHHHHHHHHHHHHHhh-cChhhhhhhhhC-C-CHHHHHHHhccC----C---------HHHHHHHHHH
Q 000124 639 LRSLVQVLNSSNEENQEYAASVLADLFS-MRQDICGSLATD-E-IVNPCMRLLTSN----T---------QMVATQSARA 702 (2138)
Q Consensus 639 I~aLV~LLks~s~evre~Aa~ALanL~s-~~~e~r~~Ive~-G-aV~~Lv~LL~dg----s---------~~Vk~~AA~A 702 (2138)
++.+...+.+........+.+.|.+++. ........+.+. + -.+.+.+++... . +.+|....+-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777778888888888899999999988 555677776654 2 234566665321 1 2788887776
Q ss_pred HHHhcCCCCcccchh-hhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH-hhCCc----hHHHHHHhcCcHHHHHHHHhC
Q 000124 703 LGALSRPTKTKTTNK-MSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN-LLSDP----DIAAEVLLEDVVSALTRVLAE 776 (2138)
Q Consensus 703 LanLa~s~~~~d~~r-~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaN-La~~~----e~r~~Ii~~g~L~~LV~LL~~ 776 (2138)
+..+....+. ..+ .-+.+.+.+..+.+-+..++.++....+.+|.. +..++ ..+..+..+..+..|..+...
T Consensus 138 ~Lsfl~~~~~--~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 138 WLSFLSSGDP--ELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHccCCH--HHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 6666653332 344 445566778888888988899999999999985 44443 345567788899999998877
Q ss_pred CCH----HHHHHHHHHHHHhhhcCC
Q 000124 777 GTS----EGKKNASRALHQLLKHFP 797 (2138)
Q Consensus 777 ~~~----~Vr~~Aa~AL~nL~~~~~ 797 (2138)
.++ .+++.+-..|..+|.+..
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCCC
Confidence 777 899999999999998653
No 349
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=57.89 E-value=62 Score=36.63 Aligned_cols=118 Identities=18% Similarity=0.249 Sum_probs=83.7
Q ss_pred EEEEEeccccccccc----CCCCceEEEEecCCCCc-cccccccCCCCCccccceeeecCCCCC------------CeEE
Q 000124 2012 LTVTIKRGNNLKQTM----GTTNAFCRLTIGNGPPR-QTKVVSHSISPEWKEGFTWAFDVPPKG------------QKLH 2074 (2138)
Q Consensus 2012 l~v~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~t~~~~~~~~p~w~~~f~~~~~~~p~~------------~~l~ 2074 (2138)
|.|.|.+|.-.-+.. |..+....|.+-=+..| .||-|.-+-+|..+|+|=|-++..+.+ |-+|
T Consensus 11 L~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pih 90 (156)
T PF15627_consen 11 LHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIH 90 (156)
T ss_pred EEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceE
Confidence 678888875441111 45566666665555566 499999999999999999999988733 4699
Q ss_pred EEEeecCCCC-CcccceEEEEecceeeccee--cceeecCCCCCCCCCccceEEEEEec
Q 000124 2075 IICKSKNTFG-KSTLGKVTIQIDKVVTEGVY--SGLFNLNHDNNKDSSSRTLEIEIIWS 2130 (2138)
Q Consensus 2075 ~~~~~~~~~~-k~~~g~~~~~~~~v~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~w~ 2130 (2138)
|-|...+++| ++-+|.=.+.=.+|...|.. +=...|.+- +...|.-.-.++++|.
T Consensus 91 ivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~-~~e~kv~~GiL~l~lE 148 (156)
T PF15627_consen 91 IVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV-GPESKVPVGILDLRLE 148 (156)
T ss_pred EEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEecc-CCCCccceeEEEEEEE
Confidence 9999999995 45667778888889887776 667777777 2232444444444444
No 350
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.05 E-value=70 Score=43.18 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=100.2
Q ss_pred hHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhh-----hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCccc
Q 000124 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDIC-----GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2138)
Q Consensus 640 ~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r-----~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d 714 (2138)
+.|..-++..|.++|-+|+..+.++.-...+.. ..+.+ +-..-|..+|++.-+.+|..|...+.++..-..+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe-- 253 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE-- 253 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH--
Confidence 344556777899999999999999864322222 11111 2235678899999999999998888776541111
Q ss_pred chhhhHHhcCChhhHH-----hhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHH
Q 000124 715 TNKMSYIAEGDVKPLI-----KLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2138)
Q Consensus 715 ~~r~~I~~~G~V~~Lv-----~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL 789 (2138)
++-..++..|+ .+.++.+.+||-.....|..+..+|.....+.. ++|++-..|.+..+.||-++...|
T Consensus 254 -----~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~--~Lpal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 254 -----MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ--LLPALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred -----HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH--HHHhcchhhhccchhHHHHHHHHH
Confidence 11111222222 223456678999999999999888876655543 777888889999999999999999
Q ss_pred HHhhhc
Q 000124 790 HQLLKH 795 (2138)
Q Consensus 790 ~nL~~~ 795 (2138)
..+-..
T Consensus 327 l~ik~v 332 (1005)
T KOG1949|consen 327 LKIKAV 332 (1005)
T ss_pred HHHHhh
Confidence 988764
No 351
>KOG1012 consensus Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain [General function prediction only]
Probab=55.84 E-value=5.3 Score=43.09 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=47.1
Q ss_pred CceEEEEEecccccccccCCCCceEEEEecCCCCccccccc------cCCCCCccccceeeec
Q 000124 2009 PGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVS------HSISPEWKEGFTWAFD 2065 (2138)
Q Consensus 2009 ~g~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~------~~~~p~w~~~f~~~~~ 2065 (2138)
.+.+.++.+-+.++...+.++++++..++ +++++++++|+ .+.+|+|++.|.+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~s~~~~~~~~~~~~~ 135 (136)
T KOG1012|consen 74 NSLLKVTQITAEDVETVKPHSEEYVTFFL-RNPEKKELLVKAEDDSESSSSPRLNEDLLFLLE 135 (136)
T ss_pred eeeeeeeehhhhhccCCCcchhhhhhhhh-cCccccceeEEeccCccccccccccchhhhhhc
Confidence 46788888888888887789999999888 88888888888 8889999988887654
No 352
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=55.57 E-value=5.3e+02 Score=33.47 Aligned_cols=96 Identities=14% Similarity=0.225 Sum_probs=75.1
Q ss_pred HHHHHHhhccC---CHHHHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhc-cC--CCHhHHHHHHHHHHHHhhcCH
Q 000124 218 VDIIVGLLSSD---NAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG-QN--NDISVRASAADALEALSSKSI 291 (2138)
Q Consensus 218 I~~Lv~lL~s~---s~evq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~-s~--sd~~vr~~Aa~aL~nLs~~s~ 291 (2138)
+..|...+... -+.+-..++.++..+...+|..-..+.+.|.++.++..+. .+ .+.++-..-..++..++- |.
T Consensus 108 ~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~ 186 (379)
T PF06025_consen 108 LSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NN 186 (379)
T ss_pred HHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CH
Confidence 44455555553 3678889999999999899988888999999999999987 32 445666666677777777 57
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCc
Q 000124 292 KAKKAVVAADGVPVLIGAIVAPS 314 (2138)
Q Consensus 292 e~Rk~i~e~ggL~~LI~LL~s~s 314 (2138)
.-.+.+.+.+.++.+++.+.++.
T Consensus 187 ~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 187 RGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHHHHHhcChHHHHHHHhCCHH
Confidence 88888999999999999997754
No 353
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=55.09 E-value=1.6e+02 Score=40.33 Aligned_cols=134 Identities=14% Similarity=0.155 Sum_probs=92.0
Q ss_pred hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhh-hhcCCHHHHHHHHHHHHHhhCC
Q 000124 676 ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKL-AKTSSIDAAETAVAALANLLSD 754 (2138)
Q Consensus 676 ve~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~L-L~s~s~~Vr~eAl~ALaNLa~~ 754 (2138)
+.+.+++.|..-+++.+..++..+...+..++...+ ...+..-+++.|.++ ++..+..++..++.|++.+.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD------~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~-- 457 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID------VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI-- 457 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc------HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH--
Confidence 345667777888888899999999999988876332 223444566777666 34578899999999999988
Q ss_pred chHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCc-hhhhhhhhhhhhHHHHHHhhccCC
Q 000124 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVG-DVLKGNAQCRFVVLTLVDSLNAMD 823 (2138)
Q Consensus 755 ~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~-d~i~~~i~~~gav~~LV~LL~s~~ 823 (2138)
+......--+-+.++.++.+..++.+......+..++....+.+ +.+. +.+.+.++-+...+.
T Consensus 458 -q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~-----~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 458 -QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMA-----ENVLPLLIPLSVAPS 521 (700)
T ss_pred -HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeeh-----hhhhhhhhhhhhccc
Confidence 22222222235677778888899999999999999988876543 2222 345566666665443
No 354
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=52.66 E-value=2.6e+02 Score=33.89 Aligned_cols=135 Identities=24% Similarity=0.160 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHHhhcChhhhhhhhhCC--CHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCCcccchhhhHHh
Q 000124 649 SNEENQEYAASVLADLFSMRQDICGSLATDE--IVNPCMRLLTSN----TQMVATQSARALGALSRPTKTKTTNKMSYIA 722 (2138)
Q Consensus 649 ~s~evre~Aa~ALanL~s~~~e~r~~Ive~G--aV~~Lv~LL~dg----s~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~ 722 (2138)
..+..+..+.++++|+.. ++..+..+.+.. .+...+..+... +..++..++..+.|++..... .....-..
T Consensus 122 ~~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~--~~~~~~~~ 198 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFS-HPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHK--NRSDEEWQ 198 (268)
T ss_dssp SSHHHHHHHHHHHHHHTT-SCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHH--CTS-CCHH
T ss_pred CcHHHHHHHHHHHHHhhC-CCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHh--cCCChHHH
Confidence 478889999999999998 566666665553 344444444444 678999999999999751111 00000011
Q ss_pred cCChhhHHhhh-hc-CCHHHHHHHHHHHHHhhCCchHHHHHHh-cCcHHHHHHHH-hCCCHHHHHHHH
Q 000124 723 EGDVKPLIKLA-KT-SSIDAAETAVAALANLLSDPDIAAEVLL-EDVVSALTRVL-AEGTSEGKKNAS 786 (2138)
Q Consensus 723 ~G~V~~Lv~LL-~s-~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~-~g~L~~LV~LL-~~~~~~Vr~~Aa 786 (2138)
...+..+++.+ .. .++++...++.||++|...+.......+ .|+-..+-... ....+.+++-+.
T Consensus 199 ~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 199 SELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 12345555533 22 6899999999999999986655444443 33333333333 334566666554
No 355
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=52.62 E-value=6.5 Score=54.01 Aligned_cols=183 Identities=15% Similarity=0.177 Sum_probs=122.6
Q ss_pred HhcchhhHHHhHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHhhcCCcccccccchhhhhHHHhh-hccchhHhhhhH
Q 000124 1875 LFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGA-LKSGSEAAQGSV 1953 (2138)
Q Consensus 1875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 1953 (2138)
-|.+|-+|+-.+.+..--+.--+|+-.|++++... .+.--+|.|.+--+|-.|||-..- +-+|-...-+--
T Consensus 103 ~~~~r~l~~~~~~~~w~v~sli~e~f~~~~~s~~~--------~~~~~wr~km~~~~t~g~~a~~~n~~~tg~~~~~~~~ 174 (1105)
T KOG1326|consen 103 SFPKRKLQDTDKPCTWNVLSLIIEAFGVSQGSARV--------RTIFDWRSKMTRTVTHGIPAWRQNILYTGANQPLEKL 174 (1105)
T ss_pred hhhhhhhHhhcCCCccchhhhHHHHhcccccchhh--------eeeecccccccccccccchhHhhhhchhccCCcchhh
Confidence 47889999998888888888888888899988653 344568889998999999986531 111111111111
Q ss_pred HHHHHHHhhhcCCCcHHHHhHHHHHHhhhhhHHHHHHHhCCCchhhhhhhhhhcCCceEEEEEeccccc--ccccCCCCc
Q 000124 1954 LDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNL--KQTMGTTNA 2031 (2138)
Q Consensus 1954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~v~~~~~~--~~~~~~~~~ 2031 (2138)
.+. ++.-+.++++.-.+ +.|.+- --|-|..-+.++|. |..|-+| -|+=+-.||
T Consensus 175 ~~~----------~~~~l~~~t~l~~~-~~p~~S-------c~~~e~~~~~lR~y-------iyQar~L~a~dk~~~sdp 229 (1105)
T KOG1326|consen 175 AAK----------VLTRLVRPTALGES-SVPEFS-------CYLSEVIHSPLRSY-------IYQARALGAPDKDDESDP 229 (1105)
T ss_pred hhh----------hhhheecccccccc-ccCceE-------EecchhhhhhhHHH-------HHHHHhhcCCCcccCCCc
Confidence 111 11113444443322 223221 12456666666653 6788888 455577899
Q ss_pred eEEEEecCCCCccccccccCCCCCccccceee-----------ecCCCCCCeEEEEEeecCCCCC-cccceEEEE
Q 000124 2032 FCRLTIGNGPPRQTKVVSHSISPEWKEGFTWA-----------FDVPPKGQKLHIICKSKNTFGK-STLGKVTIQ 2094 (2138)
Q Consensus 2032 ~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~-----------~~~~p~~~~l~~~~~~~~~~~k-~~~g~~~~~ 2094 (2138)
|.++.| =|-.|.|-||+.++||-|+|.-+|- .+.|| .+.+|+.+.++.|+ |.+||..-.
T Consensus 230 ~a~v~f-~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~pp---i~v~e~yd~dr~g~~ef~gr~~~~ 300 (1105)
T KOG1326|consen 230 DAAVEF-CGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPP---IRVFEVYDLDRSGINEFKGRKKQR 300 (1105)
T ss_pred hhhhhc-ccccceeEeecCcCCCCccceeeccceeecCccchhhcCCC---eEEEEeehhhhhchHHhhcccccc
Confidence 999999 8889999999999999999998874 44555 58899999988866 466765443
No 356
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=51.88 E-value=2.2e+02 Score=37.29 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=95.5
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCC----ChhHHHHHHHHHHHHhcCC
Q 000124 130 LLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ----DNVVQGFVTGALRNLCGDK 205 (2138)
Q Consensus 130 Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~e----d~~V~e~Al~aL~nLcs~~ 205 (2138)
+..+++..+.+-|-+|+-....+..+++ -+..+++.++++-|.+.+-+++.+++.. +.....-++..|...|+.+
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~D-i~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDD-IVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccc-hhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 4455555555566677777777777655 3567888999999999999999875422 3345566777888888876
Q ss_pred Cc-hhHHHHHhCcHHHHHHhhccC-CHH------HHHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhc
Q 000124 206 DG-YWRATLEAGGVDIIVGLLSSD-NAA------AQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG 268 (2138)
Q Consensus 206 e~-r~~aI~e~GGI~~Lv~lL~s~-s~e------vq~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~ 268 (2138)
+- ..+.|+. .||.|+..+... +++ +.+.+..+|..++ ..+.-.+.++..|+++.+.++-.
T Consensus 95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va-~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA-TAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh-cCCchhHHHHhcCchHHHHHHHh
Confidence 52 1233443 689999988763 222 6677888888887 44666777889999999998875
No 357
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=51.73 E-value=6.7e+02 Score=32.67 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=87.0
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc---c-------CCHHHHHHHHHHHHHhhcC
Q 000124 87 PLFISILRSGT-PLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLK---S-------ESTDTRKAAAEALYEVSSG 155 (2138)
Q Consensus 87 p~LV~LLks~~-~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~---s-------ed~eVr~aAa~AL~nLS~~ 155 (2138)
..+.++|..+. ...+..++.+++.|+.+...-+-+....-+..|+.+-. . .|..+...+.++|+|+-.+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 34566777665 45566777888888776554433333333333333221 1 2568899999999999983
Q ss_pred CCCCChhhHHHHHHcCcHHHHHHhhCCCCC--CChhHHHHHHHHHHHHhcC-CCchhHHHHHhCcHHHHHHhhcc
Q 000124 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNK--QDNVVQGFVTGALRNLCGD-KDGYWRATLEAGGVDIIVGLLSS 227 (2138)
Q Consensus 156 ~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~--ed~~V~e~Al~aL~nLcs~-~e~r~~aI~e~GGI~~Lv~lL~s 227 (2138)
++..+..+.+......+.+.+..... -...+...-++.|.-+..- .+.|.+.+.+.+|++.+..++..
T Consensus 128 ----Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 128 ----SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred ----cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 67788888888888888777643210 0011333445555544333 25566788899999999999876
No 358
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=49.95 E-value=3.3e+02 Score=38.66 Aligned_cols=177 Identities=13% Similarity=0.149 Sum_probs=116.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHH-hcCCchhhHHHHHHHHHHHhhcCchhHHHHHhc
Q 000124 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL-LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAA 515 (2138)
Q Consensus 437 LV~LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~L-L~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~a 515 (2138)
+..-+.+.+...+..|+.-+........ ........+-+-.++.. +.+.|..+...++..|..++...... ..-+..
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~ 335 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAK 335 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHH
Confidence 4444566677788888877776655432 11111111222333332 34567778888888888887643332 223345
Q ss_pred CCchHHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-----
Q 000124 516 GGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----- 590 (2138)
Q Consensus 516 GaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e----- 590 (2138)
+..|.++.-++.....+++....++-..... ... ....+.+...++.++|..+..+...+.......+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-~~l------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNS-TPL------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhc-ccH------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 7889999999888888888777666665431 111 2234556678899999999988888777665422
Q ss_pred ----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000124 591 ----SATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2138)
Q Consensus 591 ----~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~ 622 (2138)
.+.++.++....|.+.+|+..+.++++.+...
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 34678888888899999999999999887543
No 359
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=49.19 E-value=12 Score=51.42 Aligned_cols=86 Identities=16% Similarity=0.262 Sum_probs=74.8
Q ss_pred CCceEEEEecCCCCccccccccC-CCCCccccceeeecCCCCCCeEEEEEeecCCCC-CcccceEEEEecceeecceecc
Q 000124 2029 TNAFCRLTIGNGPPRQTKVVSHS-ISPEWKEGFTWAFDVPPKGQKLHIICKSKNTFG-KSTLGKVTIQIDKVVTEGVYSG 2106 (2138)
Q Consensus 2029 ~~~~~~~~~~~~~~~~t~~~~~~-~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~~-k~~~g~~~~~~~~v~~~~~~~~ 2106 (2138)
-.+|+.+.+.+.--++|+++.+. .+|+|.+.|+-.+..+ --++|+.|+.++-+| -.-.|+|.|....++..-++..
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~--~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK--AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc--ccEEEEeecCCccccceeEEEEeccchhhhhccccccc
Confidence 48899999977777789999999 9999999998888755 457899999999999 8899999999999999899999
Q ss_pred eeecCCCCCC
Q 000124 2107 LFNLNHDNNK 2116 (2138)
Q Consensus 2107 ~~~l~~~~~~ 2116 (2138)
.|.+.+.+.|
T Consensus 216 ~~~Il~~d~~ 225 (887)
T KOG1329|consen 216 WFPILDNDGK 225 (887)
T ss_pred eeeeeccCCc
Confidence 9998887443
No 360
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=47.22 E-value=2.8e+02 Score=39.04 Aligned_cols=180 Identities=14% Similarity=0.092 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHhhhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc
Q 000124 56 QERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLK 135 (2138)
Q Consensus 56 ~ere~AL~~L~~L~~~~d~ak~lI~~~aGgVp~LV~LLks~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~ 135 (2138)
--+..|++.+...|..+ -......+.++.|.++....++++..-...+|+.+++-+.-.........+|..+.+..
T Consensus 506 ~~ki~a~~~~~~~~~~~----vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 506 PVKISAVRAFCGYCKVK----VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred chhHHHHHHHHhccCce----eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence 34666777666666222 11111134556666666556777777777788888776655555555666677666554
Q ss_pred c--CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCC-CCChhHHHHHHHHHHHHhcCCCchhHHH
Q 000124 136 S--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN-KQDNVVQGFVTGALRNLCGDKDGYWRAT 212 (2138)
Q Consensus 136 s--ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s-~ed~~V~e~Al~aL~nLcs~~e~r~~aI 212 (2138)
. +||.+...+-.++..|++... +..=..+-.+|.++..+..+. +....+...++..|..+....+.-....
T Consensus 582 k~s~DP~V~~~~qd~f~el~q~~~------~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~ 655 (1005)
T KOG2274|consen 582 KYSEDPQVASLAQDLFEELLQIAA------NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNL 655 (1005)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHH------hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHH
Confidence 4 789999999999999986321 112234458999999998654 2223466677777776666654333333
Q ss_pred HHhCcHHHHHHhh-ccCCHHHHHHHHHHHHHHHh
Q 000124 213 LEAGGVDIIVGLL-SSDNAAAQSNAASLLARLML 245 (2138)
Q Consensus 213 ~e~GGI~~Lv~lL-~s~s~evq~~A~~aL~nLs~ 245 (2138)
.-+-..|.+.+.. .+++.++-.++-.+|..+..
T Consensus 656 l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 656 LICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 3344566666655 45567777777777776663
No 361
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=45.05 E-value=5.1e+02 Score=32.70 Aligned_cols=201 Identities=14% Similarity=0.175 Sum_probs=130.8
Q ss_pred HHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc------hh---h-HHHHHHHhcCCCcchHHHHHHHHHHHHhhh
Q 000124 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD------SA---T-INQLLALLLGDSPSSKAHVIKVLGHVLTMA 623 (2138)
Q Consensus 554 I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e------~~---a-I~~Li~LL~~~d~~V~~~A~~AL~~La~~~ 623 (2138)
+-++|.+..|+..+...+-+.+..+.....|+-...- .+ . ...+..|++. ....+..+..| |++....
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~-~~~~~~iaL~c-g~mlrEc 152 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG-YENTPEIALTC-GNMLREC 152 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh-hccchHHHHHH-HHHHHHH
Confidence 4457888888888888888888888888777754311 00 0 1222233333 22133334443 4444433
Q ss_pred cchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCC----HHHHHHHhccCCHHHHHHH
Q 000124 624 LQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEI----VNPCMRLLTSNTQMVATQS 699 (2138)
Q Consensus 624 ~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~Ga----V~~Lv~LL~dgs~~Vk~~A 699 (2138)
..-+...+.+.+.........+++.++=++...|...+..+...+...+.+...... .+.--.++++++--.+.++
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 333455556667777788888888888788888888888887655555555544433 2335678889999999999
Q ss_pred HHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCch
Q 000124 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD 756 (2138)
Q Consensus 700 A~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e 756 (2138)
...++.+....+.+......+........++.+|++++..+|-+|-.+..-...+|.
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 999999875222211222234445678889999999999999999999887776543
No 362
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=44.59 E-value=1.1e+03 Score=33.17 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=100.0
Q ss_pred HHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHH-hCcHHHHHHhhc
Q 000124 148 ALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE-AGGVDIIVGLLS 226 (2138)
Q Consensus 148 AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r~~aI~e-~GGI~~Lv~lL~ 226 (2138)
+|+++... .+...+.+++.|++..+.+.+..-.. ..+...+++.+.|++...+.+...+.. .--...+..++.
T Consensus 494 ~l~~~t~~----~~~~C~~~l~~~g~~~~~~~l~~f~~--~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~ 567 (699)
T KOG3665|consen 494 ALWNITDE----NPETCKEFLDNGGMKLLFKCLESFDN--EELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLN 567 (699)
T ss_pred HHHhhhcC----CHHHHHHHHhcccHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Confidence 56677752 56788999999999999999986542 348889999999998876433111110 001123333344
Q ss_pred cCCH-HHHHHHHHHHHHHHhhcCCCcch-----------------------hhccchHHH-HHHHhccCCCHhHHHHHHH
Q 000124 227 SDNA-AAQSNAASLLARLMLAFGDSIPT-----------------------VIDSGAVKA-LVQLVGQNNDISVRASAAD 281 (2138)
Q Consensus 227 s~s~-evq~~A~~aL~nLs~~~~e~r~~-----------------------l~~~GaL~~-LL~LL~s~sd~~vr~~Aa~ 281 (2138)
.-+. +.-..++.+|+.+....+..... ......... +.+++........+.+|.+
T Consensus 568 ~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ 647 (699)
T KOG3665|consen 568 KWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALW 647 (699)
T ss_pred hcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHH
Confidence 3333 66777777777776432211000 111122223 5555654555577889999
Q ss_pred HHHHHhhcCHHHHHHHHhcCCHHHHHHhh
Q 000124 282 ALEALSSKSIKAKKAVVAADGVPVLIGAI 310 (2138)
Q Consensus 282 aL~nLs~~s~e~Rk~i~e~ggL~~LI~LL 310 (2138)
++.++...+++..+.+.+.++++.+.+.-
T Consensus 648 ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 648 TIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred HHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 99999998888888888888888877743
No 363
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=44.51 E-value=51 Score=34.07 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=63.4
Q ss_pred hhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhh
Q 000124 726 VKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGN 805 (2138)
Q Consensus 726 V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~ 805 (2138)
....+..++++...+|..++..|..|..... ...+-.++.+..+...+.+.++-+--+|+.+|..|+...|
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-------- 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-------- 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh--------
Confidence 3445666788888999999999999987555 2223335567777788999999999999999999998653
Q ss_pred hhhhhhHHHHHHhhcc
Q 000124 806 AQCRFVVLTLVDSLNA 821 (2138)
Q Consensus 806 i~~~gav~~LV~LL~s 821 (2138)
...++.|++.+.+
T Consensus 76 ---~~vl~~L~~~y~~ 88 (92)
T PF10363_consen 76 ---DEVLPILLDEYAD 88 (92)
T ss_pred ---HHHHHHHHHHHhC
Confidence 3466777777754
No 364
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=44.02 E-value=1e+02 Score=42.04 Aligned_cols=222 Identities=12% Similarity=0.120 Sum_probs=133.7
Q ss_pred HhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCchHHHHHhhhCCHHHHHHHHHHHHHHhcCCh
Q 000124 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE 548 (2138)
Q Consensus 469 ~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~d~~vre~Aa~aL~nLs~~sd 548 (2138)
.+.....++.|+..+..++ .-...+..+-.++..- +... +..+.+|.|+++++..|..+|-. .|.++-..-+
T Consensus 288 ~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~l-d~~e--yq~~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~ 359 (690)
T KOG1243|consen 288 EIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDL-DEEE--YQVRIIPVLLKLFKSPDRQIRLL---LLQYIEKYID 359 (690)
T ss_pred HHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhc-cccc--cccchhhhHHHHhcCcchHHHHH---HHHhHHHHhh
Confidence 3444556677777666555 1112222222233211 1101 56688999999999999999875 4444433333
Q ss_pred hHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc-----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh
Q 000124 549 DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----SATINQLLALLLGDSPSSKAHVIKVLGHVLTMA 623 (2138)
Q Consensus 549 ~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e-----~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~ 623 (2138)
.....+.+....|.+..-+.+.++.+++.....+..++..-. .+.+..+-++-.|++..++....-|++.+....
T Consensus 360 ~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l 439 (690)
T KOG1243|consen 360 HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL 439 (690)
T ss_pred hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeeccccccc
Confidence 444455667889999999999999999999999888775422 223344444444566677777777777765442
Q ss_pred cchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHH
Q 000124 624 LQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARAL 703 (2138)
Q Consensus 624 ~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~AL 703 (2138)
+.. ++.++ .+.++..-+++.-...|..+..+++..... .+.. =+...+++.+..+.-+.+..++..|-.++
T Consensus 440 ~~~--~R~~v----L~~aftralkdpf~paR~a~v~~l~at~~~-~~~~--~va~kIlp~l~pl~vd~e~~vr~~a~~~i 510 (690)
T KOG1243|consen 440 AAS--VRKRV----LASAFTRALKDPFVPARKAGVLALAATQEY-FDQS--EVANKILPSLVPLTVDPEKTVRDTAEKAI 510 (690)
T ss_pred chh--hhccc----cchhhhhhhcCCCCCchhhhhHHHhhcccc-cchh--hhhhhccccccccccCcccchhhHHHHHH
Confidence 221 12221 234444456666566777777777766542 2211 12345667777777777777887777666
Q ss_pred HHhc
Q 000124 704 GALS 707 (2138)
Q Consensus 704 anLa 707 (2138)
...-
T Consensus 511 ~~fl 514 (690)
T KOG1243|consen 511 RQFL 514 (690)
T ss_pred HHHH
Confidence 5543
No 365
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=43.63 E-value=88 Score=36.26 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=48.6
Q ss_pred ceEEEEecCCCCc-----cccccccCCCCCccccceeeecCCCCCCeE-------EEEEeecC-C-CCCcccceEEEEec
Q 000124 2031 AFCRLTIGNGPPR-----QTKVVSHSISPEWKEGFTWAFDVPPKGQKL-------HIICKSKN-T-FGKSTLGKVTIQID 2096 (2138)
Q Consensus 2031 ~~~~~~~~~~~~~-----~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l-------~~~~~~~~-~-~~k~~~g~~~~~~~ 2096 (2138)
+.-.+..++|++. .|-|.-+|.+|.|+|+|---+-.. +.++- ||.|+++. . -...-+|+--+.|-
T Consensus 39 ~l~~i~~g~~~~~~~~~~~S~V~yHnk~P~f~DEiKi~LP~~-l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 39 ALPVIFKGSSPEEFLTEAYTAVTYHNKSPDFYDEIKIKLPAD-LTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred cceEEEeCCCCCccceeEEEEEEEeCCCCcccceEEEEcCCC-CCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 3334436788762 388999999999999998887754 66654 45666653 1 11234888877775
Q ss_pred ceeecceecc-eeec
Q 000124 2097 KVVTEGVYSG-LFNL 2110 (2138)
Q Consensus 2097 ~v~~~~~~~~-~~~l 2110 (2138)
+ +|++.. .|+|
T Consensus 118 ~---~g~L~~g~~~L 129 (179)
T cd08696 118 R---NGRLQSGEFNL 129 (179)
T ss_pred c---CCEEecCCEEE
Confidence 4 444432 4443
No 366
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=42.55 E-value=1.2e+02 Score=32.64 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=49.6
Q ss_pred EEEEecccccccccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC--CCcccce
Q 000124 2013 TVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF--GKSTLGK 2090 (2138)
Q Consensus 2013 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~--~k~~~g~ 2090 (2138)
.|||.-|...++.--.+|.|+.|.=.+|+..+ ...+++ .|.|.++..++|+-.+|.+|-.+++ ..=++-+
T Consensus 4 ~VtV~TG~~~~gAGT~anV~i~L~G~~g~s~~-~~L~~~-------~f~~~v~~~~LG~L~~irIwHDnsG~~~~Wfl~~ 75 (114)
T cd01757 4 HVVIVPSKKLGGSMFTANPWICVSGELGETPP-LQIPKN-------SLEMTFDCQNLGKLTTVQIGHDNSGLLAKWLVEY 75 (114)
T ss_pred EEEEEeCCCCCCCCCcceEEEEEEEcCCCcCC-EEecCC-------ceEEEEecCCcCCcEEEEEEECCCCCCCCeeeeE
Confidence 57888887766663344556655554554333 233322 7888888788999999999988776 4446777
Q ss_pred EEEE
Q 000124 2091 VTIQ 2094 (2138)
Q Consensus 2091 ~~~~ 2094 (2138)
|.|+
T Consensus 76 V~V~ 79 (114)
T cd01757 76 VMVR 79 (114)
T ss_pred EEEE
Confidence 7776
No 367
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=42.35 E-value=1.2e+02 Score=41.25 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=118.7
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChh
Q 000124 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2138)
Q Consensus 591 ~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e 670 (2138)
.+.+|.+++|.+..|..++...+.-+-...... .........++.+..-+.+.++.+|+.++..+..|+..
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L------t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k--- 399 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL------TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK--- 399 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc------CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh---
Confidence 457899999999998888876544443332222 22234555688899989999999999999999988752
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000124 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2138)
Q Consensus 671 ~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaN 750 (2138)
.-........++.+-++-.|.+..+|+...-||+.++..... ..|. .-.+.++..-++++-...|..+..+|+.
T Consensus 400 L~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~--~~R~----~vL~~aftralkdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 400 LSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA--SVRK----RVLASAFTRALKDPFVPARKAGVLALAA 473 (690)
T ss_pred hchhhhcHHHHHHHHhhCccccCcccccceeeecccccccch--hhhc----cccchhhhhhhcCCCCCchhhhhHHHhh
Confidence 111123334445555555566678999988899988763222 1222 2233445555666656667777777665
Q ss_pred hhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 000124 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2138)
Q Consensus 751 La~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~ 793 (2138)
.....+... +....+|.++.+.-+.+..+|..|-.++....
T Consensus 474 t~~~~~~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 474 TQEYFDQSE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred cccccchhh--hhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 544322221 23346778888888888888888877665543
No 368
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=41.75 E-value=1.2e+02 Score=41.15 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=78.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhcCCCchhhhhhhhh--hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc--
Q 000124 767 VSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQC--RFVVLTLVDSLNAMDMNGTDVADALEVVALLART-- 842 (2138)
Q Consensus 767 L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~~~~~d~i~~~i~~--~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~-- 842 (2138)
...++.++.+.+-.+|..-.++++|+..+...+......... ...+.-|++.+.+ ...-.+..|+..+..+..-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D--~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSD--TYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHhCcc
Confidence 456788999999999999999999999875433322221111 2233334444432 3345689999998887742
Q ss_pred ccCCcccCCcccccccCCCchHHHHHhhhcCChHHHHHHHHHHHHhhccCCc
Q 000124 843 KQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPA 894 (2138)
Q Consensus 843 ~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~AieiL~~L~~~~~~ 894 (2138)
+.... ......-...++.+.+-.+|++|+.+.++++..||-
T Consensus 379 k~~~~-----------r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 379 KTVGR-----------RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred cccch-----------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 11111 223466778999999999999999999999999985
No 369
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=41.67 E-value=31 Score=39.08 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=48.6
Q ss_pred CCceEEEEecCCC-----CccccccccCCCCCccccceee--ecCCCCCCeEEEEEeecCCCC-CcccceEEEEecc
Q 000124 2029 TNAFCRLTIGNGP-----PRQTKVVSHSISPEWKEGFTWA--FDVPPKGQKLHIICKSKNTFG-KSTLGKVTIQIDK 2097 (2138)
Q Consensus 2029 ~~~~~~~~~~~~~-----~~~t~~~~~~~~p~w~~~f~~~--~~~~p~~~~l~~~~~~~~~~~-k~~~g~~~~~~~~ 2097 (2138)
.+=||...+=-|. +.+|+.+.=+..+.|||--+|. +-+=|.+-+|.|.+|+.+..| ..-+|.++|+|=+
T Consensus 30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 4455555432332 2356666666778999976665 456789999999999987664 4479999999865
No 370
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=40.84 E-value=5.2e+02 Score=35.48 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC--CCHHHHH
Q 000124 608 SKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCM 685 (2138)
Q Consensus 608 V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~--GaV~~Lv 685 (2138)
+...+...|+.+....+..+........+..+..++..++ .++..+..+++.|+|+.. ++-.++.+... -.+.++.
T Consensus 560 ~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~~i~~~~~ 637 (745)
T KOG0301|consen 560 MMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSRLESILDPVI 637 (745)
T ss_pred HhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhhhhh
Confidence 3444556666554332222222221122335666666665 667888899999999998 46666554432 2222233
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhh---cC--CHHHHHHHHHHHHHhhCCchHHHH
Q 000124 686 RLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK---TS--SIDAAETAVAALANLLSDPDIAAE 760 (2138)
Q Consensus 686 ~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~---s~--s~~Vr~eAl~ALaNLa~~~e~r~~ 760 (2138)
..=...+..++..-+....|.+...-. .+ .+.|..+.|..++. .. +-+..-..+.||++|.+.+.....
T Consensus 638 ~~~s~~~knl~ia~atlaln~sv~l~~--~~----~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~ 711 (745)
T KOG0301|consen 638 EASSLSNKNLQIALATLALNYSVLLIQ--DN----EQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ 711 (745)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHHHh--cc----cccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence 222233345554444444444431111 00 01233333333322 22 223334588899999987776666
Q ss_pred HHhcCcHHHHHHHHhC
Q 000124 761 VLLEDVVSALTRVLAE 776 (2138)
Q Consensus 761 Ii~~g~L~~LV~LL~~ 776 (2138)
+.+.-.+..+.+-+++
T Consensus 712 ~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 712 LAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHhcCHHHHHHHHHH
Confidence 6665666666665554
No 371
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=40.36 E-value=3.9e+02 Score=37.93 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=98.9
Q ss_pred cCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCCh
Q 000124 647 NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDV 726 (2138)
Q Consensus 647 ks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V 726 (2138)
++.+..+...++..|..|+...... ..-...++.+.+..-+.+....++..+..++-.++.+.+. ....
T Consensus 305 kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l----------~~~~ 373 (815)
T KOG1820|consen 305 KDANINVVMLAAQILELIAKKLRPL-FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL----------SKMS 373 (815)
T ss_pred cCcchhHHHHHHHHHHHHHHhcchh-hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH----------HHHH
Confidence 4457788888888888887643322 2223346778889999998888888888777777653322 2256
Q ss_pred hhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 727 KPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 727 ~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
+.+...++.+++.++.++...+..... ++.....-.-.+.+|.++....+.+.+||..|.+++.-+...
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 778889999999999998888877754 222111222235788888888899999999999999877664
No 372
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=40.17 E-value=81 Score=31.32 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCch
Q 000124 142 RKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGY 208 (2138)
Q Consensus 142 r~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e~r 208 (2138)
.+.|+.++.++++ .+.|...+.+.++++.++++....+. ..++..+..+|.-+++..++.
T Consensus 4 lKaaLWaighIgs-----s~~G~~lL~~~~iv~~iv~~a~~s~v--~siRGT~fy~Lglis~T~~G~ 63 (73)
T PF14668_consen 4 LKAALWAIGHIGS-----SPLGIQLLDESDIVEDIVKIAENSPV--LSIRGTCFYVLGLISSTEEGA 63 (73)
T ss_pred HHHHHHHHHhHhc-----ChHHHHHHhhcCHHHHHHHHHHhCCc--cchHHHHHHHHHHHhCCHHHH
Confidence 5788999999996 45677788888999999999986553 458999999999998877654
No 373
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=39.09 E-value=48 Score=39.82 Aligned_cols=81 Identities=17% Similarity=0.111 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhcCC-------hHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHc
Q 000124 99 LAKVNVAATLSVLCKDEDLRLKVLLGGC-------IPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE 170 (2138)
Q Consensus 99 evr~~Aa~~L~~Ls~~e~~r~~v~~~G~-------Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~Ivea 170 (2138)
.-|..|+.+|++||-.+.|...+...+- +..|+++|.. +++-.|+.|...|.+|+..+ +..++....+.
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~---~~~~r~iA~q~ 215 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGD---EAAARAIAMQK 215 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhccc---HHHHHHHHHhh
Confidence 4688999999999988887777766543 4456666666 68999999999999999842 45566777888
Q ss_pred CcHHHHHHhhCC
Q 000124 171 GVVPTLWDQLNP 182 (2138)
Q Consensus 171 G~Ip~Ll~LL~s 182 (2138)
+.|..|+..+..
T Consensus 216 ~~i~~Li~FiE~ 227 (257)
T PF12031_consen 216 PCISHLIAFIED 227 (257)
T ss_pred chHHHHHHHHHH
Confidence 999999999864
No 374
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=37.98 E-value=77 Score=38.20 Aligned_cols=85 Identities=21% Similarity=0.231 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhhccchhhHHhhhch-------hHHHHHHHhc-CCchhhHHHHHHHHHHHhhcCchh-HHHHHhcCC
Q 000124 447 DVREYLILSLTKLCRREVGIWEAIGKRE-------GIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDS-KWAITAAGG 517 (2138)
Q Consensus 447 evq~~Aa~aL~~Ls~~s~~~~~~I~e~g-------gIp~LV~LL~-s~d~~Vr~~Aa~aL~nLa~~s~e~-r~~I~~aGa 517 (2138)
.-|..|.++|.+++-. +.+...|...+ .+..|++++. .+++..|+.|+..|.+|+..+... |..-.+.+.
T Consensus 139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 3488889999999876 34444443333 3445666664 567789999999999999865543 344557799
Q ss_pred chHHHHHhhhCCHHH
Q 000124 518 IPPLVQLLEAGSQKA 532 (2138)
Q Consensus 518 Ip~LV~LLks~d~~v 532 (2138)
+..|+.++++.+...
T Consensus 218 i~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 218 ISHLIAFIEDAEQNA 232 (257)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998765443
No 375
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=37.95 E-value=1e+03 Score=33.53 Aligned_cols=176 Identities=14% Similarity=0.152 Sum_probs=104.7
Q ss_pred HHHHHhhcCchhHHHHHhcCCchHHHHHhhhC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCc--chhhhcccc-CCh
Q 000124 497 LIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAV--PAFLWLLKS-GGP 572 (2138)
Q Consensus 497 aL~nLa~~s~e~r~~I~~aGaIp~LV~LLks~-d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI--~aLv~LLkS-~~~ 572 (2138)
+|++....++++...+.+.|+...+...++.- ....+..+.+.+.|++...+ .+........+ ..+-.++.. .+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 66788887788888999999999999999865 67888899999999976321 11111111111 122223333 444
Q ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhH-HHHhhcCC-C
Q 000124 573 KGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRS-LVQVLNSS-N 650 (2138)
Q Consensus 573 evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~~d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~a-LV~LLks~-s 650 (2138)
+.-+.++..|..+..+.+.. .. ...-+.+.....++...........+. .....+ +..++..+ .
T Consensus 573 ersY~~~siLa~ll~~~~~~-~~------~~~r~~~~~~l~e~i~~~~~~~~~~~~-------~~~f~~~~~~il~~s~~ 638 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKT-TE------CVFRNSVNELLVEAISRWLTSEIRVIN-------DRSFFPRILRILRLSKS 638 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcC-cc------ccchHHHHHHHHHHhhccCccceeehh-------hhhcchhHHHHhcccCC
Confidence 88899999999887664320 00 000011111111121111110000000 111222 44444443 6
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHH
Q 000124 651 EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRL 687 (2138)
Q Consensus 651 ~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~L 687 (2138)
+..+-.|.+++.++...+++.+..+.+.+++..+.+.
T Consensus 639 ~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (699)
T KOG3665|consen 639 DGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENI 675 (699)
T ss_pred CchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhc
Confidence 7788899999999999999988888888887776654
No 376
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=37.86 E-value=8e+02 Score=29.55 Aligned_cols=133 Identities=22% Similarity=0.213 Sum_probs=79.0
Q ss_pred HHccCCHHHHHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhcCCch
Q 000124 440 LITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIP 519 (2138)
Q Consensus 440 LL~sss~evq~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~aGaIp 519 (2138)
+-+..++..+......|..++.++.... .-.+..|..+.+.+....+..+...+..+-..++..- +.+.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~ 77 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQ 77 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHH
Confidence 4455778889999999999998841111 1234556666666766666667777777765322211 2233
Q ss_pred HHHHH--hh------hC--CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcc-ccCChhHHHHHHHHHHHHHHh
Q 000124 520 PLVQL--LE------AG--SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL-KSGGPKGQDASAMALTKLIRA 588 (2138)
Q Consensus 520 ~LV~L--Lk------s~--d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LL-kS~~~evq~~Aa~AL~nLs~~ 588 (2138)
.++.. ++ ++ ..+.....+..+..++...++ .-...++.+...+ ++.++..+..+..+|..++..
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 33332 01 11 233334444566666654333 1123456666777 788888899999999999854
No 377
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=37.30 E-value=51 Score=34.07 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=43.1
Q ss_pred ccCCCCceEEEEecCCCCccccccccCCCCCccccceeeecCCCCCCeEEEEEeecCCC
Q 000124 2025 TMGTTNAFCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPKGQKLHIICKSKNTF 2083 (2138)
Q Consensus 2025 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~~~~~~~~~ 2083 (2138)
.||-.+-.|+|.+.|-.--+|.- +.--+.-|||.|++-+| .+--|.|.|.-||-.
T Consensus 5 ~~~~~eV~avLklDn~~VgqT~W-k~~s~q~WDQ~Fti~Ld---RsRELEI~VywrD~R 59 (98)
T cd08687 5 LMGCSEVSAVLKLDNTVVGQTQW-KPKSNQAWDQSFTLELE---RSRELEIAVYWRDWR 59 (98)
T ss_pred EecccceEEEEEEcCeEEeeccc-cccccccccceeEEEee---cccEEEEEEEEecch
Confidence 47778999999997766556543 23357889999999999 557899999999764
No 378
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.03 E-value=1.5e+03 Score=32.65 Aligned_cols=129 Identities=21% Similarity=0.229 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCCCC-C--------ChhhH
Q 000124 96 GTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLS-D--------DHVGM 164 (2138)
Q Consensus 96 ~~~evr~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~se--d~eVr~aAa~AL~nLS~~~~n-k--------d~~gr 164 (2138)
.++..|..|-.-|..+-+.+ |.+..++++..++ +..+|..|+--|.|.-..+.+ + .++.-
T Consensus 16 ~d~~~R~~AE~~L~q~~K~p---------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~d 86 (1010)
T KOG1991|consen 16 SDAKERKAAEQQLNQLEKQP---------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEED 86 (1010)
T ss_pred CChHHHHHHHHHHHHhhcCC---------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHH
Confidence 35778888877777764322 7788888888773 677899999889888543211 1 22334
Q ss_pred HHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC-CchhHHHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q 000124 165 KIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARL 243 (2138)
Q Consensus 165 e~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~-e~r~~aI~e~GGI~~Lv~lL~s~s~evq~~A~~aL~nL 243 (2138)
+..+..++++.++.- ...++..-..+|.++-.++ +++|.. -++.+-.+|.+.+......++-+|+.|
T Consensus 87 k~~irenIl~~iv~~-------p~~iRvql~~~l~~Ii~~D~p~~Wp~-----l~d~i~~~Lqs~~~~~vy~aLl~l~qL 154 (1010)
T KOG1991|consen 87 KAVIRENILETIVQV-------PELIRVQLTACLNTIIKADYPEQWPG-----LLDKIKNLLQSQDANHVYGALLCLYQL 154 (1010)
T ss_pred HHHHHHHHHHHHHhC-------chHHHHHHHHHHHHHHhcCCcccchh-----HHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence 566666777766653 2357777777887776654 455553 367888899998888889999999999
Q ss_pred Hh
Q 000124 244 ML 245 (2138)
Q Consensus 244 s~ 245 (2138)
+.
T Consensus 155 ~k 156 (1010)
T KOG1991|consen 155 FK 156 (1010)
T ss_pred HH
Confidence 94
No 379
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.39 E-value=1.5e+03 Score=32.34 Aligned_cols=158 Identities=14% Similarity=0.144 Sum_probs=91.9
Q ss_pred HHhcCCchHHHHHhhhC--------CHHHHHHHHHHHHHHhcCChhHHHHHHH-----c--CCcchhhhccc----cCCh
Q 000124 512 ITAAGGIPPLVQLLEAG--------SQKAREVAAHVLWILCCHSEDIRACVES-----A--GAVPAFLWLLK----SGGP 572 (2138)
Q Consensus 512 I~~aGaIp~LV~LLks~--------d~~vre~Aa~aL~nLs~~sd~~r~~I~e-----~--GaI~aLv~LLk----S~~~ 572 (2138)
+.+.+++..++++.... -.+....|.++|+-+++-.+...+++.. . .++..++.... -.+|
T Consensus 597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp 676 (1516)
T KOG1832|consen 597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP 676 (1516)
T ss_pred HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence 44556777777765432 2455667777777666543333332222 1 25555554332 1379
Q ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHhcC-CCcchH-------HHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHH
Q 000124 573 KGQDASAMALTKLIRAADSATINQLLALLLG-DSPSSK-------AHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ 644 (2138)
Q Consensus 573 evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~~-~d~~V~-------~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~ 644 (2138)
+++..|..++.|+.+.+.........+.-.. ++..+. ....+.|. .....+...+||..|+.
T Consensus 677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~----------~mw~~Vr~ndGIkiLl~ 746 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLR----------QMWEAVRGNDGIKILLK 746 (1516)
T ss_pred HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHH----------HHHHHHhcCccHHHHHH
Confidence 9999999999999876532222222222221 222110 00111111 12233567889999999
Q ss_pred hhcCC-----CHHHHHHHHHHHHHHhhcChhhhhhhhhCCC
Q 000124 645 VLNSS-----NEENQEYAASVLADLFSMRQDICGSLATDEI 680 (2138)
Q Consensus 645 LLks~-----s~evre~Aa~ALanL~s~~~e~r~~Ive~Ga 680 (2138)
+++-. -+.+|..|+++|.-|+. ++..++.+.+...
T Consensus 747 Ll~~k~P~t~aD~IRalAc~~L~GLaR-~~tVrQIltKLpL 786 (1516)
T KOG1832|consen 747 LLQYKNPPTTADCIRALACRVLLGLAR-DDTVRQILTKLPL 786 (1516)
T ss_pred HHhccCCCCcHHHHHHHHHHHHhcccc-CcHHHHHHHhCcc
Confidence 99765 35689999999999998 7788877766543
No 380
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=36.11 E-value=9.9e+02 Score=30.31 Aligned_cols=196 Identities=13% Similarity=0.115 Sum_probs=123.5
Q ss_pred hhhchhHHHHHHHhcCCchhhHHHHHHHHHHHhhcCchhHHHHHhc-CCchHHHH-HhhhC--CHHHHHHHHHHHHHHhc
Q 000124 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAA-GGIPPLVQ-LLEAG--SQKAREVAAHVLWILCC 545 (2138)
Q Consensus 470 I~e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLa~~s~e~r~~I~~a-GaIp~LV~-LLks~--d~~vre~Aa~aL~nLs~ 545 (2138)
+.+.|....|++-+...+-..+..+..+..|+-...-++|...++- ..=|.++. +++.. .+++--.+-..|.....
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcir 154 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIR 154 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHh
Confidence 3446778888998888888899999999988876544444332210 11122222 22222 24444343344444433
Q ss_pred CChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhc----------h-hh-HHHHHHHhcCCCcchHHHHH
Q 000124 546 HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----------S-AT-INQLLALLLGDSPSSKAHVI 613 (2138)
Q Consensus 546 ~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e----------~-~a-I~~Li~LL~~~d~~V~~~A~ 613 (2138)
.+...+.+....-........+.++-++..-|..+...+..... . .. ...--+|+.+++.-.+.++.
T Consensus 155 -he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 155 -HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred -hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 34455555556666666666666666666666666555543321 1 11 22366788888888999999
Q ss_pred HHHHHHHhhhcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 614 ~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
..++.+....++.....+-+.....++.+..+|+.++..+|..|-.+..-...
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhc
Confidence 99998876555544444556667789999999999999999999988776655
No 381
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.96 E-value=1.8e+03 Score=33.21 Aligned_cols=148 Identities=15% Similarity=0.077 Sum_probs=88.0
Q ss_pred chhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 637 KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 637 GaI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
++++.|-.-|.+.+.++|..|...++.+.. .+..+-.=.........+.-+.|.+..+|..+....-++..+++. ..
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~-~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~--~~ 335 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFS-DKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS--IA 335 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHh-cchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch--hh
Confidence 468888888889999999999999999987 444443311234556677777899999999988888777654443 22
Q ss_pred hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Q 000124 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~~ 795 (2138)
+. ....+.--..+.|++++.....+..... -......++.. .+...-+-+++....||..|..-|..+-.+
T Consensus 336 ~~------~~~~~~l~~~~~D~~~rir~~v~i~~~~-v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 336 KA------STILLALRERDLDEDVRVRTQVVIVACD-VMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hH------HHHHHHHHhhcCChhhhheeeEEEEEee-hhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 21 1111111122334444432111110000 00001112222 444455667888999999999988877763
No 382
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=35.54 E-value=2.2e+02 Score=32.37 Aligned_cols=117 Identities=21% Similarity=0.168 Sum_probs=73.8
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcC--cHHHHHHhhCCCCCCChhHHHHHHHHHHHHh
Q 000124 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEG--VVPTLWDQLNPKNKQDNVVQGFVTGALRNLC 202 (2138)
Q Consensus 125 G~Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG--~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLc 202 (2138)
..+..+.++|.+.+++.|..++..+..++..+ +.+.+.+.+ -+..|+..++.+. .+.+.+.++.+|..|.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~------~~e~l~~~~~~W~~~Ll~~L~~~~--~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQC------SWEILLSHGSQWLRALLSILEKPD--PPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 34566778898888999999999999998632 134554544 5677888887754 4567888888888887
Q ss_pred cCCCchhHHHHHhC--c----HHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCc
Q 000124 203 GDKDGYWRATLEAG--G----VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSI 251 (2138)
Q Consensus 203 s~~e~r~~aI~e~G--G----I~~Lv~lL~s~s~evq~~A~~aL~nLs~~~~e~r 251 (2138)
..-.+.-...++.. . ++.++.++.. ......++.+|..+...++...
T Consensus 97 ~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 97 DLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred HHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccc
Confidence 65433322222221 1 3333333332 4566777777777775555443
No 383
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=35.49 E-value=1.3e+02 Score=34.56 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=42.5
Q ss_pred ecCCC-Ccc--ccccccCCCCCccccceeeecCCCCCCeEEE--EEeecC------CCCCcccceEEEEecc----eeec
Q 000124 2037 IGNGP-PRQ--TKVVSHSISPEWKEGFTWAFDVPPKGQKLHI--ICKSKN------TFGKSTLGKVTIQIDK----VVTE 2101 (2138)
Q Consensus 2037 ~~~~~-~~~--t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~--~~~~~~------~~~k~~~g~~~~~~~~----v~~~ 2101 (2138)
.++|+ .+. |-|+-.+.+|.|+|||---+-.. +.++-|+ ++..-+ ...+.-+|+.-+.|-+ ++.+
T Consensus 45 ~~~~~~~~s~~~sv~~~~k~p~f~deiKi~LP~~-l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~g~~i~d 123 (178)
T cd08679 45 PGSGSELRSEYTSVVYYHKNPVFNDEIKIQLPAD-LTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKDGAFIKD 123 (178)
T ss_pred cCCCCccceeEEEEEEcCCCCCCceeEEEecCCc-cCCCeEEEEEEEccccccccCCCccceEEEEEEeccccCCcEEcC
Confidence 55554 222 66777779999999999998322 4345554 333332 2345668999888865 4455
Q ss_pred ceec
Q 000124 2102 GVYS 2105 (2138)
Q Consensus 2102 ~~~~ 2105 (2138)
|.+.
T Consensus 124 g~~~ 127 (178)
T cd08679 124 GDHT 127 (178)
T ss_pred CCEE
Confidence 5543
No 384
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=35.46 E-value=82 Score=36.28 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=30.8
Q ss_pred ccccccCCCCCccccceeeecCCCCCCeEEE--EEeecCCC--CC--cccceEEEEecceeecce
Q 000124 2045 TKVVSHSISPEWKEGFTWAFDVPPKGQKLHI--ICKSKNTF--GK--STLGKVTIQIDKVVTEGV 2103 (2138)
Q Consensus 2045 t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~~--~~~~~~~~--~k--~~~g~~~~~~~~v~~~~~ 2103 (2138)
|-|.-++.+|.|+|+|-.-+-.+ ..++-|+ .+...+.- ++ ..+|+.-+.|-+ +|+
T Consensus 63 S~v~yh~k~P~f~deiKi~LP~~-l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~---~g~ 123 (184)
T PF14429_consen 63 SSVYYHNKNPQFNDEIKIQLPPD-LFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD---NGT 123 (184)
T ss_dssp ----TT-SS-EEEEEEEEEE-CC-CCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB----TS-
T ss_pred EEEEecCCCCCccEEEEEEcCch-hcccEEEEEEEEeeccccccCccceeEEEEEEeee---CCe
Confidence 77788999999999999988744 6666554 33333222 22 689999999987 676
No 385
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=34.39 E-value=1.8e+02 Score=30.60 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=51.4
Q ss_pred EEEEecccccccccCCCCceEEEEecCCCCccccccccCCCC---CccccceeeecCC-CCCCeEEEEEeecCCC--CCc
Q 000124 2013 TVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVVSHSISP---EWKEGFTWAFDVP-PKGQKLHIICKSKNTF--GKS 2086 (2138)
Q Consensus 2013 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~p---~w~~~f~~~~~~~-p~~~~l~~~~~~~~~~--~k~ 2086 (2138)
.|+|+=+..-. ..|+..+-|.+ .|..++|..+...-++ +-+.+++|.++.+ .+|+-..|+++..+++ ..=
T Consensus 4 ~v~V~Tg~~~~---agT~~~v~i~l-~g~~g~s~~~~l~~~~~~f~~g~~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~W 79 (116)
T cd00113 4 TVTIKTGDKKG---AGTDSNISLAL-YGENGNSSDIPILDGPGSFERGSTDTFQIDLKLDIGDITKVYLRRDGSGLSDGW 79 (116)
T ss_pred EEEEEECCCCC---CCccCEEEEEE-EeCCCCcccEEccCCCCcccCCCceEEEEeccCCCcCeEEEEEEECCCCCCCCE
Confidence 45665554332 25677888888 6777665544433333 4667889999888 9999999999886554 344
Q ss_pred ccceEEEE
Q 000124 2087 TLGKVTIQ 2094 (2138)
Q Consensus 2087 ~~g~~~~~ 2094 (2138)
++.+|.|+
T Consensus 80 ~l~~V~V~ 87 (116)
T cd00113 80 YCESITVQ 87 (116)
T ss_pred EEeEEEEE
Confidence 56666554
No 386
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=33.52 E-value=5.7e+02 Score=31.51 Aligned_cols=154 Identities=22% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCchhhHHHHHHHhhhhhhhccchhhHHHhhcChHHHHHHhhcCChhhHhHHHHHHHHHhcchhhHHHh
Q 000124 1806 ACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYV 1885 (2138)
Q Consensus 1806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1885 (2138)
|-+.|-.+|+.-|.+-..--.|..|-+|-..-=....++.++ ...+..|+..++..... +--+++.+|.+-.+|.|.
T Consensus 19 a~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~--l~gl~~L~~~~~~~~~~-~~~i~~~l~~~~~~q~~~ 95 (262)
T PF14500_consen 19 ALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA--LKGLLALVKMKNFSPES-AVKILRSLFQNVDVQSLP 95 (262)
T ss_pred HHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH--HHHHHHHHhCcCCChhh-HHHHHHHHHHhCChhhhh
Q ss_pred HH------HHHHHHHHHHHHhhhhcccchHHHHHH--------------------HHHHhhcCCccccccc---------
Q 000124 1886 SN------ELIRSLTAALERELWSTATINEEVLRT--------------------LHVIFMNFPKLHTSEA--------- 1930 (2138)
Q Consensus 1886 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~--------- 1930 (2138)
-+ ++++.|...-...+ .+.+.+++.. +.++..+||--...|.
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l---~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYF 172 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREAL---QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYF 172 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH---HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhhee
Q ss_pred ---------------------------------chhhhhHHHhhhccchhHhhhhHHHHHHHHhhhcC
Q 000124 1931 ---------------------------------ATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWS 1965 (2138)
Q Consensus 1931 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1965 (2138)
|-.|+|+|+.-|.|++..+...+|+||..--+.|+
T Consensus 173 PI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 173 PITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred eeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC
No 387
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=33.01 E-value=3e+02 Score=33.06 Aligned_cols=123 Identities=20% Similarity=0.164 Sum_probs=79.0
Q ss_pred hhcCcchhHHHhhcccchhHHHHHHHHHHhhccCCCccccchhhcccchHHHHHHHhccC----Cc----HHHHHHHHHH
Q 000124 1300 LAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSN----SS----LELKRNAAEL 1371 (2138)
Q Consensus 1300 ~a~~~~~~l~~~~~~~~~~~~~~~~~al~kl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~----~~l~~~~a~l 1371 (2138)
..+..++=|+.|..++...-+-.+++-+-++-+-+|+---.+.. =..+..+++.++. .. ......++++
T Consensus 35 ~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~---~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~i 111 (234)
T PF12530_consen 35 CVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQP---LLLLLILRIPSSFSSKDEFWECLISIAASIRDI 111 (234)
T ss_pred chhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHH---HHHHHHhhcccccCCCcchHHHHHHHHHHHHHH
Confidence 33444455555555555555667777777775555554311111 1222223323221 11 2234466777
Q ss_pred HHHHhcCcccccCccccchhhhhhhhh-cCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhhh
Q 000124 1372 CFIMFGNAKIIANPIASECIQPLISLM-QSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDL 1434 (2138)
Q Consensus 1372 ~~~l~~~~~i~~~~~a~~~~~pli~l~-~s~~~~~~~~~~~~~~~ll~~e~~~~~~~~~~~v~~ 1434 (2138)
|+..=+ -+..++.++..+| +...+.++-.+.++++.|. +.+..+...+-.+|.|
T Consensus 112 c~~~p~--------~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc-~~~vvd~~s~w~vl~~ 166 (234)
T PF12530_consen 112 CCSRPD--------HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC-EAEVVDFYSAWKVLQK 166 (234)
T ss_pred HHhChh--------hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHH
Confidence 876655 5678999999999 8999999999999999999 6778888888888887
No 388
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=32.42 E-value=52 Score=34.98 Aligned_cols=94 Identities=18% Similarity=0.146 Sum_probs=55.2
Q ss_pred eEEEEecCCCCccccccccCCCCCccccceeeecCCCC------CCeEEEEEeecCCCCCcccceEEEEecceee-cc-e
Q 000124 2032 FCRLTIGNGPPRQTKVVSHSISPEWKEGFTWAFDVPPK------GQKLHIICKSKNTFGKSTLGKVTIQIDKVVT-EG-V 2103 (2138)
Q Consensus 2032 ~~~~~~~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~p~------~~~l~~~~~~~~~~~k~~~g~~~~~~~~v~~-~~-~ 2103 (2138)
||-..|-.=|.--|.||. ..+|..|=+=+|.|+.-.. +..+.||++-.-.-.-+.+|.+.|.+.+++. +| +
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 677777666666688887 9999999998998875321 3467888887654446889999999999994 55 8
Q ss_pred ecceeecCCCCCCCCCccceEEEEE
Q 000124 2104 YSGLFNLNHDNNKDSSSRTLEIEII 2128 (2138)
Q Consensus 2104 ~~~~~~l~~~~~~~~~~~~~~~~~~ 2128 (2138)
+.+.=.|.+. .++..++++.+++
T Consensus 81 i~~~~~l~g~--~~~~~g~l~y~~r 103 (107)
T PF11618_consen 81 IHGSATLVGV--SGEDFGTLEYWIR 103 (107)
T ss_dssp EEEEEEE-BS--SS-TSEEEEEEEE
T ss_pred EEEEEEEecc--CCCeEEEEEEEEE
Confidence 9999999888 4558898885544
No 389
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=32.41 E-value=1.8e+03 Score=33.92 Aligned_cols=131 Identities=13% Similarity=0.154 Sum_probs=78.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHH-hc
Q 000124 645 VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYI-AE 723 (2138)
Q Consensus 645 LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~-~~ 723 (2138)
++++.++.+++.+......+...-. ...+..++..|+..+-+|+..-...|...|..|+...+ ..+. -+
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~------~~l~~fa 512 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP------SELQPFA 512 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H------HHHHHTH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH------HHHHHHH
Confidence 5677899999999998888877432 23456688889998888877666788999999886222 1121 23
Q ss_pred CChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHH-HHHhCCCHHHHHHHH
Q 000124 724 GDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALT-RVLAEGTSEGKKNAS 786 (2138)
Q Consensus 724 G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV-~LL~~~~~~Vr~~Aa 786 (2138)
..+..+++.+..-+..-.......|+.|+........-+.. -+..++ +.+...++..++..+
T Consensus 513 ~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~d-el~ivIRKQLss~~~~~K~~GI 575 (1426)
T PF14631_consen 513 TFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQD-ELHIVIRKQLSSSNPKYKRIGI 575 (1426)
T ss_dssp HHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHH-HHHHHHHHHHT-SSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHH-HHHHHHHHhhcCCcHHHHHHhH
Confidence 45566677777655555556788888886422111111111 133344 466677777766543
No 390
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.67 E-value=2e+03 Score=32.29 Aligned_cols=225 Identities=15% Similarity=0.147 Sum_probs=122.3
Q ss_pred cCCCHHHHHHHHHHHHHHhhcChhhhhhhhhC--CCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcC
Q 000124 647 NSSNEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEG 724 (2138)
Q Consensus 647 ks~s~evre~Aa~ALanL~s~~~e~r~~Ive~--GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G 724 (2138)
++.+..+|..+.++|..++.. +.....+.+. .+.+.|..-+++-....+..+..+|..|....+. .... .+..
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~--e~~~-~i~k- 738 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA--EHCD-LIPK- 738 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH--HHHH-HHHH-
Confidence 344889999999999999884 3322222211 2334455555566667788888888887763332 2222 1222
Q ss_pred ChhhHHhhhhcCCHHHHHHHHHHHHHhhC-----CchHHHHHHhcCcHHHHHHHHhCC----CHHHHHHHHHHHHHhhhc
Q 000124 725 DVKPLIKLAKTSSIDAAETAVAALANLLS-----DPDIAAEVLLEDVVSALTRVLAEG----TSEGKKNASRALHQLLKH 795 (2138)
Q Consensus 725 ~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~-----~~e~r~~Ii~~g~L~~LV~LL~~~----~~~Vr~~Aa~AL~nL~~~ 795 (2138)
.|+-++=+++..+...+..|-.+|.++.. ++..-. ....+..++..+..+ ...+.....-++..+..+
T Consensus 739 ~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 739 LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 33333334477788888888777777762 111000 111344444444433 233333335666666665
Q ss_pred CCCchhhhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc-ccCCcccCCcccccccCCCchHHHHHhhhcCC
Q 000124 796 FPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLART-KQGLNFTYPPWAALAEVPSSIEPLVCCLAEGP 874 (2138)
Q Consensus 796 ~~~~d~i~~~i~~~gav~~LV~LL~s~~~~~~~~~~AL~ALa~La~~-~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~ 874 (2138)
+ ..+.........+..+...+.+ .....+..|++.+..+... +..+..-+ .+.-++.+..+..+..
T Consensus 816 ~---~~~ld~~~l~~li~~V~~~L~s--~sreI~kaAI~fikvlv~~~pe~~l~~~--------~~~LL~sll~ls~d~k 882 (1176)
T KOG1248|consen 816 F---KNILDDETLEKLISMVCLYLAS--NSREIAKAAIGFIKVLVYKFPEECLSPH--------LEELLPSLLALSHDHK 882 (1176)
T ss_pred H---hccccHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHcCCHHHHhhh--------HHHHHHHHHHHHHhhh
Confidence 4 2333332333344444444433 3344577777777766632 11111111 2334677777777767
Q ss_pred hHHHHHHHHHHHHhhccC
Q 000124 875 PPLQDKAIEILSRLCGDQ 892 (2138)
Q Consensus 875 ~~vq~~AieiL~~L~~~~ 892 (2138)
..++-+.-..|.+|+..+
T Consensus 883 ~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 883 IKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 778888888888887765
No 391
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=31.32 E-value=1.4e+02 Score=34.72 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=50.7
Q ss_pred CceEEEEecCCCCc----cccccccCCCCCccccceeeecCCCCCCeEE-------EEEeecCCC----CC-cccceEEE
Q 000124 2030 NAFCRLTIGNGPPR----QTKVVSHSISPEWKEGFTWAFDVPPKGQKLH-------IICKSKNTF----GK-STLGKVTI 2093 (2138)
Q Consensus 2030 ~~~~~~~~~~~~~~----~t~~~~~~~~p~w~~~f~~~~~~~p~~~~l~-------~~~~~~~~~----~k-~~~g~~~~ 2093 (2138)
.|.-.+..++|.+. .|-|.-++.+|+|.|||---+-.. ++++-| |.|.+..+. +. .-+|+.-+
T Consensus 41 ~~l~~I~~g~g~~~~~~~~s~V~yh~k~P~f~dEiKI~LP~~-l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~l 119 (185)
T cd08697 41 KPLKCIYYGPGGGFTTSAYAAVLHHNQNPEFYDEIKIELPTQ-LHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWL 119 (185)
T ss_pred ccceEEecCCCCCcceEEEEEEEEcCCCCccceeEEEecCCc-CCCCeeEEEEEEeeccccccccccCCCccceEEEEEE
Confidence 45556667777743 288889999999999999888755 666655 445433221 22 33898888
Q ss_pred Eecceeecceecc-eeec
Q 000124 2094 QIDKVVTEGVYSG-LFNL 2110 (2138)
Q Consensus 2094 ~~~~v~~~~~~~~-~~~l 2110 (2138)
.|=+ ..|++++ .|.|
T Consensus 120 PLl~--~~~~l~~g~~~L 135 (185)
T cd08697 120 PLLK--DKGRLNSEEQTP 135 (185)
T ss_pred eeec--CCCEEecCCEee
Confidence 8865 4555553 4444
No 392
>PRK09169 hypothetical protein; Validated
Probab=31.14 E-value=2.6e+03 Score=33.53 Aligned_cols=148 Identities=15% Similarity=0.103 Sum_probs=64.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHH-hcCCCCcccchhhhH
Q 000124 642 LVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGA-LSRPTKTKTTNKMSY 720 (2138)
Q Consensus 642 LV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALan-La~s~~~~d~~r~~I 720 (2138)
|-.+-+-++.+....++.+|+.-...++..+..+..++....|..+-+=.+......|+.+|+. +... . ..+. -
T Consensus 631 LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~-~---~~~~-~ 705 (2316)
T PRK09169 631 LNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALALAERLARE-A---GLRQ-A 705 (2316)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcc-h---hhhh-h
Confidence 3334444444444445555554443344444444444555555555444444455556656543 3221 1 1111 1
Q ss_pred HhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHH-HHHHhhh
Q 000124 721 IAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASR-ALHQLLK 794 (2138)
Q Consensus 721 ~~~G~V~~Lv~LL~s--~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~-AL~nL~~ 794 (2138)
.+...+..+++-|.. .....+..+...-..|..+++.+..+-..+.-..|-.+-+=.....++.|++ ...+++.
T Consensus 706 f~aq~lAn~LnAlsKwp~~~acr~A~~~LA~rL~~~~~l~~a~~aQ~lAnsLNaLsKwp~~~~c~~a~~~La~~lg~ 782 (2316)
T PRK09169 706 FDAQGVANALNALSKWPEEEACRAAAEALAGRLAADADLRQAMNPQGLANSLNALSKWPQEPACQQAALLLAERLGS 782 (2316)
T ss_pred cCHHHHHHHHHHHHhccCccHHHHHHHHHHHHHhcChHHHhhcCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 111122222222221 2233444444444556667777766544444333333333333444444444 4444544
No 393
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=31.12 E-value=4.1e+02 Score=36.73 Aligned_cols=131 Identities=18% Similarity=0.136 Sum_probs=90.2
Q ss_pred hhhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL-TSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 638 aI~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL-~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
.++.|..-+++.+..+++.+...+...... -+ ...+++-+++.+..+. +..+..++..++.|++.+.. .
T Consensus 390 IlplL~~S~~~~~~~iQ~~~L~~lptv~e~-iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-------~ 459 (700)
T KOG2137|consen 390 ILPLLYRSLEDSDVQIQELALQILPTVAES-ID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-------R 459 (700)
T ss_pred HHHHHHHHhcCcchhhHHHHHHhhhHHHHh-cc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-------H
Confidence 467777777778889999999988887652 11 3445566667776653 45677899999999999873 1
Q ss_pred hhhHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCC
Q 000124 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGT 778 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~ 778 (2138)
.+....-..+.++.+..+..++++....+.+..++......+.+...+.++|.++.+...+.
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 12222234566677777778889888888888777664433355666778888887765553
No 394
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.07 E-value=1.7e+02 Score=36.48 Aligned_cols=141 Identities=13% Similarity=0.179 Sum_probs=93.0
Q ss_pred hhHHHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhh
Q 000124 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2138)
Q Consensus 639 I~aLV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~ 718 (2138)
+...+..|.+++++.+-.+...+..|+..+++....... .++-.+++-++.....+-..|+.+++.+....+.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~------ 162 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN------ 162 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH------
Confidence 444555677778888888888888887766554433322 3455666777777788889999999998863221
Q ss_pred hHHhcCChhh-HHhhhhc---CCHHHHHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 000124 719 SYIAEGDVKP-LIKLAKT---SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2138)
Q Consensus 719 ~I~~~G~V~~-Lv~LL~s---~s~~Vr~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~~ 794 (2138)
.+.+ .... +..|++. ++.-+++.|-.+|-.+..+.. -..+++.|..+++..++.++.+++.+..+...
T Consensus 163 ~i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 163 SIDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT------PQKLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 2222 2333 3344444 334578888888888865332 12366778888999999999999877765543
No 395
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=29.91 E-value=1e+03 Score=28.81 Aligned_cols=133 Identities=17% Similarity=0.096 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcC-CcchhhhccccC----ChhHHHHHHHHHHHHHHhhchhhHHHHHHHhc
Q 000124 528 GSQKAREVAAHVLWILCCHSEDIRACVESAG-AVPAFLWLLKSG----GPKGQDASAMALTKLIRAADSATINQLLALLL 602 (2138)
Q Consensus 528 ~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~G-aI~aLv~LLkS~----~~evq~~Aa~AL~nLs~~~e~~aI~~Li~LL~ 602 (2138)
..+..+--+.++++|+-.+......++...+ .+...+..+.+. +..++-.++..+.|++.. +.+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~-----------~~~ 190 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVL-----------LHK 190 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHH-----------HHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH-----------HHh
Confidence 4677888899999999775444433333333 333333333333 678899999999999743 111
Q ss_pred CC-CcchHHHHHHHHHHHHhhhcchHHHHhhhcccchhhHHHHhh-cC-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCC
Q 000124 603 GD-SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL-NS-SNEENQEYAASVLADLFSMRQDICGSLATDE 679 (2138)
Q Consensus 603 ~~-d~~V~~~A~~AL~~La~~~~~~d~v~~~l~~~GaI~aLV~LL-ks-~s~evre~Aa~ALanL~s~~~e~r~~Ive~G 679 (2138)
.. +.+.+.. .+..+++.+ .. .++|+...+..+|++|...++.........|
T Consensus 191 ~~~~~~~~~~--------------------------ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~ 244 (268)
T PF08324_consen 191 NRSDEEWQSE--------------------------LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLD 244 (268)
T ss_dssp CTS-CCHHHH--------------------------HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCT
T ss_pred cCCChHHHHH--------------------------HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcC
Confidence 11 1111111 234444422 22 4889999999999999975444444433334
Q ss_pred CHHHHHHHhc-cCCHHHHH
Q 000124 680 IVNPCMRLLT-SNTQMVAT 697 (2138)
Q Consensus 680 aV~~Lv~LL~-dgs~~Vk~ 697 (2138)
+-..+...-. ...+.++.
T Consensus 245 ~~~~~~~~~~~~~e~ri~~ 263 (268)
T PF08324_consen 245 VKSVLSKKANKSKEPRIKE 263 (268)
T ss_dssp HHHHHHHHHHHTTSHHHHH
T ss_pred hHHHHHHHHhcccchHHHH
Confidence 4433333332 23444444
No 396
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=29.48 E-value=1.8e+02 Score=29.04 Aligned_cols=66 Identities=11% Similarity=-0.007 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcC
Q 000124 101 KVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEG 171 (2138)
Q Consensus 101 r~~Aa~~L~~Ls~~e~~r~~v~~~G~Ip~Lv~LL~s-ed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG 171 (2138)
...++.++++++..+.....+...+.++.++++..+ +...+|-.|..+|.-++. ...|.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-----T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-----TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-----CHHHHHHHHHcC
Confidence 346788899998888888877778999999999987 688899999999999995 566777776654
No 397
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=28.71 E-value=88 Score=34.77 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=74.2
Q ss_pred chhHHHHHHHHHHhhcCCccccccccCcccchHHHHHhhcCChHHHHHHHHHHHHHHhcc--cccccchhhhhhhhhhHH
Q 000124 1529 LWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ--EHFQQDITTKNAVVPLVQ 1606 (2138)
Q Consensus 1529 ~~~~~~al~~l~~~~e~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~~~~ll~~l~~~--~~~~~~~~~~~a~~pl~~ 1606 (2138)
.|+....+=-+|| .+|+ .|..|+.++..-|.++++.+|-.|=.||+.+..| .+|+..+.++-.+--|++
T Consensus 18 dw~~ileicD~In--~~~~-------~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~k 88 (139)
T cd03567 18 DWEAIQAFCEQIN--KEPE-------GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIK 88 (139)
T ss_pred CHHHHHHHHHHHH--cCCc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHH
Confidence 4555555555664 2222 3678999999999999999999999999999998 689999999999999999
Q ss_pred Hhhc------cchhhHHHHHHHHHHHhhhhh
Q 000124 1607 LAGI------GILNLQQTAVKALEKISTSWP 1631 (2138)
Q Consensus 1607 ~~~~------~~~~~~~~~~~~~~~~~~~~~ 1631 (2138)
++.- .-...|++.+.-+...+.+.|
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 89 LVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9932 456888888887776555443
No 398
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=28.31 E-value=2.8e+02 Score=29.71 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=50.6
Q ss_pred EEEEecccccccccCCCCceEEEEe--cCCCCccccccccCCCCCccccceeeecCC-CCCCeEEEEEeecCCC--CCcc
Q 000124 2013 TVTIKRGNNLKQTMGTTNAFCRLTI--GNGPPRQTKVVSHSISPEWKEGFTWAFDVP-PKGQKLHIICKSKNTF--GKST 2087 (2138)
Q Consensus 2013 ~v~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~p~w~~~f~~~~~~~-p~~~~l~~~~~~~~~~--~k~~ 2087 (2138)
.|+|+-|.. ++. .||.-|-|+| .+|++...+.-....+-+-...-+|.++.| ++|+-.+|++|..+++ ..=+
T Consensus 4 ~V~V~Tg~~-~~A--GT~a~V~i~l~G~~g~S~~~~L~~~~~~FerG~~d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W~ 80 (113)
T cd01753 4 KVTVATGSS-LFA--GTDDYIYLTLVGTAGESEKQLLDRPGYDFERGAVDEYKVKVPEDLGELLLVRLRKRKYLLFDAWF 80 (113)
T ss_pred EEEEEECCC-cCC--ccccEEEEEEEECCCcccCEEcCCCCCccCCCCeeEEEEecccCCCCcEEEEEEECCCCCCCCee
Confidence 577777643 333 2555555555 334333333333334566788889999875 7999999999988765 3335
Q ss_pred cceEEEE
Q 000124 2088 LGKVTIQ 2094 (2138)
Q Consensus 2088 ~g~~~~~ 2094 (2138)
+.+|+|+
T Consensus 81 l~~V~V~ 87 (113)
T cd01753 81 CNYITVT 87 (113)
T ss_pred ecEEEEE
Confidence 7777766
No 399
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=28.29 E-value=1.2e+02 Score=31.27 Aligned_cols=82 Identities=15% Similarity=0.053 Sum_probs=55.1
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHHHhhchhhHHHHHH
Q 000124 520 PLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLA 599 (2138)
Q Consensus 520 ~LV~LLks~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs~~~e~~aI~~Li~ 599 (2138)
..+..|.++.+.+|..+...|+.|....+ ...+.....+..+...++++++=+--+|..+|..|+......+++.|++
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~ 84 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLD 84 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 34455667777788888888888876554 1111223445555677888888888888888888886655566777666
Q ss_pred HhcC
Q 000124 600 LLLG 603 (2138)
Q Consensus 600 LL~~ 603 (2138)
...+
T Consensus 85 ~y~~ 88 (92)
T PF10363_consen 85 EYAD 88 (92)
T ss_pred HHhC
Confidence 5544
No 400
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=26.45 E-value=49 Score=36.81 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=73.6
Q ss_pred chhHHHHHHHHHHhhcCCccccccccCcccchHHHHHhhcCChHHHHHHHHHHHHHHhcc--cccccchhhhhhhhhhHH
Q 000124 1529 LWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ--EHFQQDITTKNAVVPLVQ 1606 (2138)
Q Consensus 1529 ~~~~~~al~~l~~~~e~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~~~~ll~~l~~~--~~~~~~~~~~~a~~pl~~ 1606 (2138)
.|+....+=-+|| .+ .-.|..|+.+|-.-|.++...+|-.|-.||+.+..| .+|+..+.+|-.+--|++
T Consensus 21 dw~~ileicD~In--~~-------~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~ 91 (142)
T cd03569 21 DLASILEICDMIR--SK-------DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD 91 (142)
T ss_pred CHHHHHHHHHHHh--CC-------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 4555555555554 11 235889999999999999999999999999999999 899999999999999999
Q ss_pred Hhhc-cchhhHHHHHHHHHHHhhhhh
Q 000124 1607 LAGI-GILNLQQTAVKALEKISTSWP 1631 (2138)
Q Consensus 1607 ~~~~-~~~~~~~~~~~~~~~~~~~~~ 1631 (2138)
++-- .-...+++++.-+...+...+
T Consensus 92 l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 92 LIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 8853 445677888777766554443
No 401
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=25.74 E-value=3.4e+02 Score=32.06 Aligned_cols=94 Identities=12% Similarity=0.273 Sum_probs=54.2
Q ss_pred EEecCCCCc----cccccccCCCCCccccceeeecCCCCCC--eEEEEEeecCCC-----CCcccceEEEEecc----ee
Q 000124 2035 LTIGNGPPR----QTKVVSHSISPEWKEGFTWAFDVPPKGQ--KLHIICKSKNTF-----GKSTLGKVTIQIDK----VV 2099 (2138)
Q Consensus 2035 ~~~~~~~~~----~t~~~~~~~~p~w~~~f~~~~~~~p~~~--~l~~~~~~~~~~-----~k~~~g~~~~~~~~----v~ 2099 (2138)
+-.+.|++- +|-|.-++.+|+|+|+|--.+..- ..+ .|..++...++. +..-+|..=+.|-+ ++
T Consensus 43 i~~gsg~~~~se~~S~V~Yh~~~P~W~EtIKl~lP~~-~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l 121 (196)
T cd08694 43 ISLGAGEEPIDEYKSVIYYQVDKPKWFETFKVAIPIE-DFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTL 121 (196)
T ss_pred EEcCCCCCcceeEEEEEEeecCCCCCceeEEEecChh-hCCCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEE
Confidence 334455544 477888999999999998776432 333 444455444333 23458888888741 66
Q ss_pred ecceecc-eeecCCCCCCCCCccceEEEEEecC
Q 000124 2100 TEGVYSG-LFNLNHDNNKDSSSRTLEIEIIWSN 2131 (2138)
Q Consensus 2100 ~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~w~~ 2131 (2138)
..|..+= -|..+...+.. .....+.+-|+.
T Consensus 122 ~dG~H~L~vYK~d~~~~~~--~~~~Yl~lP~~~ 152 (196)
T cd08694 122 TDGEHDLIVYKVDAKKKLE--DAKAYLSLPSTR 152 (196)
T ss_pred ccCCEEEEEEEeccccccc--cccceeeCCcch
Confidence 6776542 23333311111 124557788875
No 402
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=25.10 E-value=8.5e+02 Score=28.27 Aligned_cols=125 Identities=20% Similarity=0.194 Sum_probs=76.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC
Q 000124 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206 (2138)
Q Consensus 127 Ip~Lv~LL~sed~eVr~aAa~AL~nLS~~~~nkd~~gre~IveaG~Ip~Ll~LL~s~s~ed~~V~e~Al~aL~nLcs~~e 206 (2138)
++.++++..+++..+|..|...+..+...|.- .+ .-++|.|+.+..+++ +.++..|...+..+....+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-nP--------~~cvp~lIAL~ts~~---~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLV-NP--------KQCVPTLIALETSPN---PSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-Ch--------HHHHhHhhhhhCCCC---hHHHHHHHHHHHHHHHHhH
Confidence 46677777788999999999999998876541 11 128999999988765 5699999999999988765
Q ss_pred chhHHHHHhCcHHHHHHhhcc---CCH-HH---HHHHHHHHHHHHhhcCCCcchhhccchHHHHHHHhcc
Q 000124 207 GYWRATLEAGGVDIIVGLLSS---DNA-AA---QSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQ 269 (2138)
Q Consensus 207 ~r~~aI~e~GGI~~Lv~lL~s---~s~-ev---q~~A~~aL~nLs~~~~e~r~~l~~~GaL~~LL~LL~s 269 (2138)
+-...=.. .|+..-..+-.. +.. .. ......-|+.+...+. -.....+..+++.++.
T Consensus 78 s~v~~~~~-~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r-----~~R~~Fl~~l~k~f~~ 141 (187)
T PF12830_consen 78 SLVESRYS-EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNR-----KSRRKFLKSLLKQFDF 141 (187)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhccc-----HhHHHHHHHHHHHHHh
Confidence 43221111 134333332222 111 11 3444455555553222 2234567777777763
No 403
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=24.70 E-value=1.4e+02 Score=34.27 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=60.9
Q ss_pred CCceEEEEEecccccccccC--CCCceEEEEecCCCCc-----cccccc--c--CCCCCccccceee--ecCCCCCCeEE
Q 000124 2008 LPGCLTVTIKRGNNLKQTMG--TTNAFCRLTIGNGPPR-----QTKVVS--H--SISPEWKEGFTWA--FDVPPKGQKLH 2074 (2138)
Q Consensus 2008 ~~g~l~v~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~t~~~~--~--~~~p~w~~~f~~~--~~~~p~~~~l~ 2074 (2138)
.+..+.|+|..+.++--.-. +.+=|+...+=-|.+. .|+.+. + ...+.|||-.+|. +-+=|..-+|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 45668899999888833222 4566676654444443 355433 1 2357799976665 44568999999
Q ss_pred EEEeecCCC----------CCcccceEEEEecc
Q 000124 2075 IICKSKNTF----------GKSTLGKVTIQIDK 2097 (2138)
Q Consensus 2075 ~~~~~~~~~----------~k~~~g~~~~~~~~ 2097 (2138)
|.++..... .+.-+|.++++|=|
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 999987543 34689999999976
No 404
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=24.28 E-value=2.2e+02 Score=31.88 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=60.9
Q ss_pred ChhhHHhhhhcCCHHHHHHHHHHHHHhhC--CchHHHHHHhcCcHHHHHHHHhC-CCHHHHHHHHHHHHHhhhcC
Q 000124 725 DVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNASRALHQLLKHF 796 (2138)
Q Consensus 725 ~V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~--~~e~r~~Ii~~g~L~~LV~LL~~-~~~~Vr~~Aa~AL~nL~~~~ 796 (2138)
++..|.+-+.+.++.++..|+..|-.+.. .+..+.++...+.+..|++++.. .++.|+.++...+.......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 66777777788899999999999999876 45677888888899999999988 78999999999998887654
No 405
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=24.25 E-value=3e+02 Score=31.21 Aligned_cols=144 Identities=14% Similarity=0.156 Sum_probs=78.7
Q ss_pred hhhHHHHhhcCC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccch
Q 000124 638 GLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2138)
Q Consensus 638 aI~aLV~LLks~-s~evre~Aa~ALanL~s~~~e~r~~Ive~GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~ 716 (2138)
.++.|..+++++ +..+|..+.++|+.|..-+|-..+.+....--. .-.+.+...... .+.+...+ +.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~----~~~~~~~~~~~~---~l~~~~~~-~~---- 78 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSK----SSENSNDESTDI---SLPMMGIS-PS---- 78 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcc----ccccccccchhh---HHhhccCC-Cc----
Confidence 477788888887 689999999999999876554444322211100 000001111111 11111110 01
Q ss_pred hhhHHhcCChhhHHhhhhcCCHHH-HHHHHHHHHHhhCCchHHHHHHhcCcHHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 000124 717 KMSYIAEGDVKPLIKLAKTSSIDA-AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2138)
Q Consensus 717 r~~I~~~G~V~~Lv~LL~s~s~~V-r~eAl~ALaNLa~~~e~r~~Ii~~g~L~~LV~LL~~~~~~Vr~~Aa~AL~nL~ 793 (2138)
.....-..++..|+..|++.+-.. ...++.++.++......+..-.-+..+|.+++.++..++..++.-..-|+.|.
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 111223346778888888765333 33577777776542222222222348899999998877777777666666554
No 406
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=23.91 E-value=87 Score=41.62 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=65.3
Q ss_pred cccccccCCCCCccccce--eeecCCCCCCeEEEEEeecCCC-----CCcccceEEEEecceeecceecceeecCCCCCC
Q 000124 2044 QTKVVSHSISPEWKEGFT--WAFDVPPKGQKLHIICKSKNTF-----GKSTLGKVTIQIDKVVTEGVYSGLFNLNHDNNK 2116 (2138)
Q Consensus 2044 ~t~~~~~~~~p~w~~~f~--~~~~~~p~~~~l~~~~~~~~~~-----~k~~~g~~~~~~~~v~~~~~~~~~~~l~~~~~~ 2116 (2138)
.|-+|...+||.|.+.|. |-|| +-|.+.+++.+-++. ..+.+|..+-++.-.|.++-.+.-..+.+. |
T Consensus 44 rte~i~~~~~p~f~~~~~l~y~fE---~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~--~ 118 (529)
T KOG1327|consen 44 RTEVIRNVLNPFFTKKFLLQYRFE---KVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPG--K 118 (529)
T ss_pred ceeeeeccCCccceeeechhheee---eeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccC--c
Confidence 488999999999999985 6677 458898888887555 778999999999999998888887777776 7
Q ss_pred CCCccceEEEEE
Q 000124 2117 DSSSRTLEIEII 2128 (2138)
Q Consensus 2117 ~~~~~~~~~~~~ 2128 (2138)
++..+++.++..
T Consensus 119 ~~~~g~iti~ae 130 (529)
T KOG1327|consen 119 NAGSGTITISAE 130 (529)
T ss_pred cCCcccEEEEee
Confidence 777777766654
No 407
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=23.55 E-value=1.5e+02 Score=33.20 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=59.1
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhC
Q 000124 679 EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLS 753 (2138)
Q Consensus 679 GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~s~~Vr~eAl~ALaNLa~ 753 (2138)
.++..|.+-+.++++.++..|...|..+..... +..+..+...+++..|++++.. .+..|+..++..+..|+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG--~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCG--KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 345667777788899999999988888876322 2567778888999999999988 789999999999998864
No 408
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=23.47 E-value=1.9e+02 Score=31.73 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=57.2
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc---CCHHHHHHHHHHHHHhhC
Q 000124 680 IVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT---SSIDAAETAVAALANLLS 753 (2138)
Q Consensus 680 aV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s---~s~~Vr~eAl~ALaNLa~ 753 (2138)
++..|.+-++++++.++..|...|..+...... ..+..+.....+..|++++.. .+..|+..++..+.+|+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~--~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGK--PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh--HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456677778889999999999999888873322 566677777788889999875 478999999999999864
No 409
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=22.90 E-value=6.7e+02 Score=29.30 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=68.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC----C---------------HHHHHHHh-ccCCHHHHHHHHH
Q 000124 642 LVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE----I---------------VNPCMRLL-TSNTQMVATQSAR 701 (2138)
Q Consensus 642 LV~LLks~s~evre~Aa~ALanL~s~~~e~r~~Ive~G----a---------------V~~Lv~LL-~dgs~~Vk~~AA~ 701 (2138)
+.-+++++++.+|..|+.++..|..+....-....+.+ . -..|+..| ++.+..+..+...
T Consensus 45 lt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK 124 (182)
T PF13251_consen 45 LTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLK 124 (182)
T ss_pred hHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 33466778999999999999999886433333322111 1 12233334 3456677888899
Q ss_pred HHHHhcCCCCcccchhhhHHhcCC----hhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000124 702 ALGALSRPTKTKTTNKMSYIAEGD----VKPLIKLAKTSSIDAAETAVAALANLLS 753 (2138)
Q Consensus 702 ALanLa~s~~~~d~~r~~I~~~G~----V~~Lv~LL~s~s~~Vr~eAl~ALaNLa~ 753 (2138)
++..+....| -.|. ..|. +..+..++.+.|.+++..++.+++.+.+
T Consensus 125 ~la~Lv~~tP---Y~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 125 CLAVLVQATP---YHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHccCC---hhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 9998887433 2221 2344 4445566777899999999999998865
No 410
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=22.69 E-value=2.3e+02 Score=35.10 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=73.0
Q ss_pred cchhhhhhhhhcCChhHHHHHHHHHHHhhhhhhhhhh---------hhhhcchhhhhHhhccc-----cchhHHHHHHHH
Q 000124 1388 SECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVE---------LVEGYDVVDLLVRLVSG-----TNHRLVEATVCA 1453 (2138)
Q Consensus 1388 ~~~~~pli~l~~s~~~~~~~~~~~~~~~ll~~e~~~~---------~~~~~~~v~~lv~~~~~-----~~~~l~~~~~~~ 1453 (2138)
.-++=|+..+++..+..++.-|.++|.|||..-.-.+ +-.=++|+.|..-++.. ..+.|.+.+..|
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4578899999999999999999999999998655555 22225577777776664 667899999999
Q ss_pred HHHhhc--------CCCchhHHHHhhhhHhHHhhhC----CCCchhHHHHHHHHHHh
Q 000124 1454 LIKLGK--------DRTPRKLQMVKAGIIDNCLDLL----PVAPSALCSTIAELFRI 1498 (2138)
Q Consensus 1454 l~~~~~--------~~~~~~~~~~~~g~i~~~~~~~----~~~p~~l~~~~a~~~~~ 1498 (2138)
|.++.+ .|....-+++-.|++..+.-.. |.....++.....+++.
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 999943 3333334444455444322111 22234555555555533
No 411
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=22.32 E-value=3.8e+02 Score=27.67 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=45.9
Q ss_pred EEEEecccccccccCCCCceEEEEecCCCC---ccccccccCC-CCCccccceeeecCC-CCCCeEEEEEeecCCCCCcc
Q 000124 2013 TVTIKRGNNLKQTMGTTNAFCRLTIGNGPP---RQTKVVSHSI-SPEWKEGFTWAFDVP-PKGQKLHIICKSKNTFGKST 2087 (2138)
Q Consensus 2013 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~t~~~~~~~-~p~w~~~f~~~~~~~-p~~~~l~~~~~~~~~~~k~~ 2087 (2138)
.|+|+=++. ++ ..||.-+-|+| -|.. +.+....-.. .-.-+.+++|.|+.| ++|+--.|.+|..++...=+
T Consensus 4 ~v~V~Tg~~-~~--aGT~~~V~l~L-~g~~~~s~~~~~~~~~~~~f~~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~ 79 (105)
T smart00308 4 KVTVTTGGL-DF--AGTTASVSLSL-VGAEGDGKESKLDYLFKGIFARGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWF 79 (105)
T ss_pred EEEEEECCc-cC--CCccceEEEEE-EeCCCCCcceeccccCCccccCCceEEEEEecccCCCCcEEEEEEeCCCCCCeE
Confidence 567766643 33 33566555555 3444 3333322111 123456888888875 69999999999987633334
Q ss_pred cceEEEE
Q 000124 2088 LGKVTIQ 2094 (2138)
Q Consensus 2088 ~g~~~~~ 2094 (2138)
+.+|+|+
T Consensus 80 l~~V~V~ 86 (105)
T smart00308 80 LKSITVK 86 (105)
T ss_pred EEEEEEE
Confidence 6666654
No 412
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=22.23 E-value=1.3e+02 Score=33.00 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=62.3
Q ss_pred CcccchHHHHHhhcCChHHHHHHHHHHHHHHhcc--cccccchhhhhhhhhhHHHhhcc-c-hhhHHHHHHHHHHHhhhh
Q 000124 1555 TPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ--EHFQQDITTKNAVVPLVQLAGIG-I-LNLQQTAVKALEKISTSW 1630 (2138)
Q Consensus 1555 ~~~~~i~~l~~~l~s~~~~~~~~~~~ll~~l~~~--~~~~~~~~~~~a~~pl~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 1630 (2138)
.|..|+..|-.=|.++++.+|-.|-.||+.+..| .+|+..+.++-.+-.|+.++.-- - ...+++++.-+ .+|
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li----~~W 109 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELI----QEW 109 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHH----HHH
Confidence 5677889999999999999999999999999999 89999999999999999887652 2 22566655544 457
Q ss_pred hhHHh
Q 000124 1631 PKAVA 1635 (2138)
Q Consensus 1631 ~~~~~ 1635 (2138)
..++.
T Consensus 110 ~~~f~ 114 (133)
T smart00288 110 ADAFK 114 (133)
T ss_pred HHHHc
Confidence 76653
No 413
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=20.98 E-value=4.2e+02 Score=29.07 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=55.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhccC--chhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhc
Q 000124 85 AMPLFISILRSGTPLAKVNVAATLSVLCKD--EDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSS 154 (2138)
Q Consensus 85 gVp~LV~LLks~~~evr~~Aa~~L~~Ls~~--e~~r~~v~~~G~Ip~Lv~LL~se--d~eVr~aAa~AL~nLS~ 154 (2138)
++..|-+-|+++++.++..|+.+|-.+.++ ......+...+.+..|.+++.+. .+.|+..++..+..-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 567788888899999999999999877765 45666777778889999998873 44599999988887764
No 414
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=20.78 E-value=1.6e+02 Score=32.77 Aligned_cols=73 Identities=12% Similarity=0.018 Sum_probs=58.5
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCcccchhhhHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhC
Q 000124 679 EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLS 753 (2138)
Q Consensus 679 GaV~~Lv~LL~dgs~~Vk~~AA~ALanLa~s~~~~d~~r~~I~~~G~V~~Lv~LL~s-~s~~Vr~eAl~ALaNLa~ 753 (2138)
.++..|.+-+.++++.++..|...|..+..... +.....+...+.+..|++++.. .+..|+..++..+..|+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG--~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCG--THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC--HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 456677777888999999999988888876322 2567778888999999999874 678999999999998864
No 415
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=20.44 E-value=5.5e+02 Score=29.92 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=42.5
Q ss_pred eEEEEEecccccccccCCCC--ceEEEEecCCCCc----cccccccCCCCCccccceeee--cCCCCCCeEEEEEeec
Q 000124 2011 CLTVTIKRGNNLKQTMGTTN--AFCRLTIGNGPPR----QTKVVSHSISPEWKEGFTWAF--DVPPKGQKLHIICKSK 2080 (2138)
Q Consensus 2011 ~l~v~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~t~~~~~~~~p~w~~~f~~~~--~~~p~~~~l~~~~~~~ 2080 (2138)
-+.|.|+.++++-=. ...+ =||+..+=-|.+. +|.-..-+-+|.|||-.+|.+ -+=|.+-+|.+.+|+.
T Consensus 11 ~friki~~~~~~~~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 11 KFRVKILGIDIPVLP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CEEEEEEeecccCcC-CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 467788888755211 2223 3444322233332 355555566799999766654 4668999999999985
No 416
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=20.29 E-value=6.3e+02 Score=28.68 Aligned_cols=139 Identities=19% Similarity=0.218 Sum_probs=70.4
Q ss_pred CchHHHHHhhhC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhccccCChhHHHHHHHHHHHHH-Hhhc---h
Q 000124 517 GIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLI-RAAD---S 591 (2138)
Q Consensus 517 aIp~LV~LLks~-d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS~~~evq~~Aa~AL~nLs-~~~e---~ 591 (2138)
.++.|.++|+++ +..+|..+..+|+.|+.-+....+.+.. ..+.-. -...+.......... .+.. ..++ .
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~--~~~~~~--~~~~~~~~~~~~l~~-~~~~~~~ee~y~~ 85 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQK--SLDSKS--SENSNDESTDISLPM-MGISPSSEEYYPT 85 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccc--cCCccc--cccccccchhhHHhh-ccCCCchHHHHHH
Confidence 345677778777 7999999999999998744433332111 111000 000000011000000 0000 0001 2
Q ss_pred hhHHHHHHHhcCCCcch-HHHHHHHHHHHHhh--hcchHHHHhhhcccchhhHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000124 592 ATINQLLALLLGDSPSS-KAHVIKVLGHVLTM--ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2138)
Q Consensus 592 ~aI~~Li~LL~~~d~~V-~~~A~~AL~~La~~--~~~~d~v~~~l~~~GaI~aLV~LLks~s~evre~Aa~ALanL~s 666 (2138)
-++..|++.|++.+-.. ...+..++..+... .....+.. ..++.++..+++.++..++....-|+.|..
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~------~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP------QVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH------HHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34566777777654432 23455666555532 12222222 247888888887777888877766666643
No 417
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=20.22 E-value=1.2e+03 Score=30.23 Aligned_cols=152 Identities=15% Similarity=0.134 Sum_probs=75.2
Q ss_pred HHHHhhhchHHHHHHHHccCCHHH-HHHHHHHHHHhhhccchhhHHhhhchhHHHHHHHh---cCCchhhHHHHHHHHHH
Q 000124 425 SQWVSHAEAKKVLIGLITMATADV-REYLILSLTKLCRREVGIWEAIGKREGIQLLISLL---GLSSEQHQEYAVQLIAI 500 (2138)
Q Consensus 425 ~~~L~e~~gI~~LV~LL~sss~ev-q~~Aa~aL~~Ls~~s~~~~~~I~e~ggIp~LV~LL---~s~d~~Vr~~Aa~aL~n 500 (2138)
...+.+.+-.+++-.-+..++... +..|+..+..++.+-......+. .+.+..++.-+ .+.+...+..|+..++.
T Consensus 203 D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 203 DEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 345677777788777776555444 44555888888865322222221 12233333221 13466788899999999
Q ss_pred HhhcCchhHHHHHhcCCchHHHHHh--------h---hCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCcchhhhcccc
Q 000124 501 LTEQVDDSKWAITAAGGIPPLVQLL--------E---AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS 569 (2138)
Q Consensus 501 La~~s~e~r~~I~~aGaIp~LV~LL--------k---s~d~~vre~Aa~aL~nLs~~sd~~r~~I~e~GaI~aLv~LLkS 569 (2138)
|+......+.-+......-.+.+.+ . +..+-++..|++.+......-+ ++.+ .+.++.++..+.+
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~--~~~l--~~~~~~l~~~L~~ 357 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP--KEQL--LQIFPLLVNHLQS 357 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS---HHHH--HHHHHHHHHHTTS
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC--HHHH--HHHHHHHHHHhCC
Confidence 9874322211111111111222222 2 2356677777777776654211 1111 2356666777777
Q ss_pred CChhHHHHHHHH
Q 000124 570 GGPKGQDASAMA 581 (2138)
Q Consensus 570 ~~~evq~~Aa~A 581 (2138)
++.-+...||.+
T Consensus 358 ~~~vv~tyAA~~ 369 (370)
T PF08506_consen 358 SSYVVHTYAAIA 369 (370)
T ss_dssp S-HHHHHHHHHH
T ss_pred CCcchhhhhhhh
Confidence 666666666654
Done!